HHsearch alignment for GI: 254780312 and conserved domain: PRK13435
>PRK13435 response regulator; Provisional.
Probab=99.93 E-value=4.3e-25 Score=171.36 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=105.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6699975998999999999998898999-999979999999718998999983655-99979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~ 80 (122)
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~-~~~ipvI~l 80 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSI-DGGVEVIFM 80 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 7899989989999999999998799799975999999999765999899978878999989999999987-599838999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
T Consensus 81 Ta~~d~---~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr 118 (141)
T PRK13435 81 TANPER---VGHDFAGALGVIAKPYSLRQVARALSYVAARR 118 (141)
T ss_pred ECCHHH---HHHHHCCCCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf 777998---60134599858989999899999999999715