HHsearch alignment for GI: 254780312 and conserved domain: TIGR01387

>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.96  E-value=9.6e-30  Score=199.21  Aligned_cols=117  Identities=26%  Similarity=0.462  Sum_probs=114.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99975998999999999998898999999979999999718998999983655999799999999858998599994379
Q gi|254780312|r    5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA   84 (122)
Q Consensus         5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~   84 (122)
T Consensus         1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~~~~~PVl~LTA~D   80 (219)
T TIGR01387         1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRSGKETPVLFLTARD   80 (219)
T ss_pred             CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             96763086026765305201234798877686247543688830899632588950689999984078987348883378


Q ss_pred             CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             7899999997699869976979899999999996036
Q gi|254780312|r   85 AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK  121 (122)
Q Consensus        85 ~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~  121 (122)
T Consensus        81 ~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~  117 (219)
T TIGR01387        81 SVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRS  117 (219)
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             8454353011478654137877603799999876775