HHsearch alignment for GI: 254780312 and conserved domain: cd02070
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.55 E-value=0.68 Score=26.35 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=64.1
Q ss_pred EEEEE----CCCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEEEECC-CCCHH-HHHHHHHHHCC-
Q ss_conf 69997----59989999999999988989999--9-9979999999718998999983655-99979-99999998589-
Q gi|254780312|r 4 KILLA----EDDDDMRRFLIKALGKAGYEVVS--C-NNGASAYDKVREEPFSLLLTDIVMP-EMDGI-ELARRATELDP- 73 (122)
Q Consensus 4 rILiV----DD~~~~r~~l~~~L~~~G~~v~~--a-~~g~~al~~~~~~~~dlii~D~~mP-~~dG~-el~~~ir~~~~- 73 (122)
T Consensus 84 ~vv~~tv~Gd~H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~divglS~~~~~~~~~~~~~i~~lr~~~~~ 163 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLR 163 (201)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 59996279877389999999999878977997789999799999999729899999625668899999999999972898
Q ss_pred -CCCEEEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf -9859999437978999999976998699769
Q gi|254780312|r 74 -DLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 (122)
Q Consensus 74 -~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP 104 (122)
T Consensus 164 ~~v~i~v-GG~a~~~--~~a~~~GAD~~a~da 192 (201)
T cd02070 164 DKVKVMV-GGAPVNQ--EFADEIGADGYAEDA 192 (201)
T ss_pred CCCEEEE-ECCCCCH--HHHHHHCCCEECCCH
T ss_conf 8985999-8801799--999992988784799