HHsearch alignment for GI: 254780312 and conserved domain: cd02072
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.92 E-value=1.2 Score=24.99 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECC--CCCHHHHHHHHHHHC-CCCCEEEEEC
Q ss_conf 5998999999999998898999---999979999999718998999983655--999799999999858-9985999943
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMP--EMDGIELARRATELD-PDLKVMFITG 82 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~---~a~~g~~al~~~~~~~~dlii~D~~mP--~~dG~el~~~ir~~~-~~~pii~~s~ 82 (122)
T Consensus 10 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~G~~di~vvv-GG 88 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV-GG 88 (128)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEE-CC
T ss_conf 65378899999999978972984798899999999998739999998232025624899999999967999998997-89
Q ss_pred C------CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 7------97899999997699869976979899999999
Q gi|254780312|r 83 F------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 83 ~------~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~ 115 (122)
T Consensus 89 ~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 867783104899999996696857499879999999985