Query gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 118 out of 24529
Neff 7.8
Searched_HMMs 23785
Date Mon May 30 09:33:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780312.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1srr_A SPO0F, sporulation resp 100.0 3.8E-32 1.6E-36 212.3 16.7 122 1-122 2-123 (124)
2 1mvo_A PHOP response regulator 100.0 1.2E-31 5.2E-36 209.3 16.1 121 1-121 2-122 (136)
3 3crn_A Response regulator rece 100.0 4.8E-31 2E-35 205.7 17.4 121 1-121 1-122 (132)
4 3gl9_A Response regulator; bet 100.0 7.4E-31 3.1E-35 204.6 17.4 119 1-119 1-121 (122)
5 1tmy_A CHEY protein, TMY; chem 100.0 9.4E-31 4E-35 204.0 17.0 119 1-119 1-120 (120)
6 3f6p_A Transcriptional regulat 100.0 1.2E-30 4.9E-35 203.4 17.3 120 1-121 1-120 (120)
7 1w25_A Stalked-cell differenti 100.0 1.9E-30 8.1E-35 202.1 16.2 119 2-120 1-121 (459)
8 2pl1_A Transcriptional regulat 100.0 4.2E-30 1.8E-34 200.1 17.7 119 4-122 2-120 (121)
9 1dbw_A Transcriptional regulat 100.0 5.7E-30 2.4E-34 199.3 18.0 121 1-121 1-122 (126)
10 2qxy_A Response regulator; reg 100.0 3.9E-30 1.6E-34 200.3 15.9 120 1-121 3-122 (142)
11 1qkk_A DCTD, C4-dicarboxylate 100.0 3.8E-30 1.6E-34 200.3 15.8 118 3-120 4-121 (155)
12 1zh2_A KDP operon transcriptio 100.0 5.7E-30 2.4E-34 199.3 15.8 120 1-122 1-120 (121)
13 2ayx_A Sensor kinase protein R 100.0 5.9E-30 2.5E-34 199.2 15.9 118 3-120 130-247 (254)
14 3cfy_A Putative LUXO repressor 100.0 4E-30 1.7E-34 200.2 14.8 121 1-121 3-123 (137)
15 2qzj_A Two-component response 100.0 8.4E-30 3.5E-34 198.3 16.1 120 1-121 3-122 (136)
16 1s8n_A Putative antiterminator 100.0 4.2E-30 1.8E-34 200.1 14.4 117 3-120 14-131 (205)
17 3kcn_A Adenylate cyclase homol 100.0 1.2E-29 4.9E-34 197.4 16.6 119 1-120 3-123 (151)
18 3gt7_A Sensor protein; structu 100.0 2.3E-29 9.8E-34 195.6 17.7 117 4-120 9-127 (154)
19 1zgz_A Torcad operon transcrip 100.0 2.4E-29 1E-33 195.6 17.6 120 1-121 1-120 (122)
20 2a9o_A Response regulator; ess 100.0 2.1E-29 8.8E-34 195.9 16.5 119 1-121 1-119 (120)
21 2jba_A Phosphate regulon trans 100.0 3.9E-30 1.6E-34 200.3 12.5 121 1-121 1-123 (127)
22 3jte_A Response regulator rece 100.0 4.7E-29 2E-33 193.8 17.9 121 1-121 1-124 (143)
23 3c3m_A Response regulator rece 100.0 3E-29 1.3E-33 194.9 16.8 122 1-122 1-125 (138)
24 3hv2_A Response regulator/HD d 100.0 2.9E-29 1.2E-33 195.1 16.5 118 4-121 16-134 (153)
25 3eod_A Protein HNR; response r 100.0 2.5E-29 1.1E-33 195.4 15.9 121 1-121 6-127 (130)
26 1mb3_A Cell division response 100.0 3.2E-29 1.3E-33 194.8 15.4 120 2-121 1-122 (124)
27 2qr3_A Two-component system re 100.0 5.4E-29 2.3E-33 193.4 16.1 120 1-120 1-126 (140)
28 2rjn_A Response regulator rece 100.0 8.1E-29 3.4E-33 192.4 16.9 119 2-120 7-126 (154)
29 3luf_A Two-component system re 100.0 3.8E-29 1.6E-33 194.3 15.2 119 2-120 124-245 (259)
30 2zay_A Response regulator rece 100.0 3.9E-29 1.7E-33 194.3 14.6 118 3-120 9-128 (147)
31 3dzd_A Transcriptional regulat 100.0 4.6E-29 1.9E-33 193.9 14.9 119 3-121 1-119 (368)
32 3hdg_A Uncharacterized protein 100.0 2.7E-29 1.2E-33 195.2 13.7 119 3-121 8-126 (137)
33 3hzh_A Chemotaxis response reg 100.0 1E-28 4.2E-33 191.8 16.3 118 3-120 37-157 (157)
34 3a10_A Response regulator; pho 100.0 3.5E-29 1.5E-33 194.5 13.8 115 3-119 2-116 (116)
35 3cu5_A Two component transcrip 100.0 2.9E-29 1.2E-33 195.1 12.0 119 1-119 1-122 (141)
36 3lte_A Response regulator; str 100.0 2.5E-28 1.1E-32 189.4 16.6 119 2-120 6-125 (132)
37 3cnb_A DNA-binding response re 100.0 4E-28 1.7E-32 188.2 17.2 119 3-121 9-131 (143)
38 3hdv_A Response regulator; PSI 100.0 2.5E-28 1.1E-32 189.4 16.0 119 3-121 8-128 (136)
39 2jk1_A HUPR, hydrogenase trans 100.0 1.6E-28 6.8E-33 190.6 14.8 118 3-121 2-120 (139)
40 1xhf_A DYE resistance, aerobic 100.0 3.6E-28 1.5E-32 188.5 16.5 120 1-121 1-121 (123)
41 3nhm_A Response regulator; pro 100.0 1.4E-28 5.8E-33 191.0 14.3 119 1-121 3-123 (133)
42 3eq2_A Probable two-component 100.0 8.4E-29 3.5E-33 192.3 12.9 119 1-119 4-123 (394)
43 3cg4_A Response regulator rece 100.0 3.6E-29 1.5E-33 194.5 10.9 118 3-120 8-127 (142)
44 2gkg_A Response regulator homo 100.0 3.6E-28 1.5E-32 188.5 15.2 119 1-120 4-125 (127)
45 1ny5_A Transcriptional regulat 100.0 6.6E-28 2.8E-32 186.9 16.6 117 4-120 2-118 (387)
46 3b2n_A Uncharacterized protein 100.0 7.4E-28 3.1E-32 186.6 16.2 120 1-120 1-123 (133)
47 1jbe_A Chemotaxis protein CHEY 100.0 8.3E-28 3.5E-32 186.3 16.3 118 4-121 6-126 (128)
48 1dz3_A Stage 0 sporulation pro 100.0 7E-28 2.9E-32 186.8 15.2 121 1-121 1-124 (130)
49 1dcf_A ETR1 protein; beta-alph 100.0 1.7E-27 7.1E-32 184.5 16.8 119 2-121 7-130 (136)
50 2r25_B Osmosensing histidine p 100.0 2E-27 8.4E-32 184.0 17.1 119 2-120 2-127 (133)
51 3m6m_D Sensory/regulatory prot 100.0 1.3E-27 5.5E-32 185.1 16.0 118 3-120 15-136 (143)
52 3h5i_A Response regulator/sens 100.0 2.9E-28 1.2E-32 189.1 12.0 119 2-121 5-125 (140)
53 3h1g_A Chemotaxis protein CHEY 100.0 2.4E-27 9.9E-32 183.6 16.5 120 3-122 6-129 (129)
54 3grc_A Sensor protein, kinase; 100.0 7.5E-28 3.2E-32 186.6 13.3 119 3-121 7-128 (140)
55 3heb_A Response regulator rece 100.0 3.3E-27 1.4E-31 182.7 16.5 118 1-118 3-133 (152)
56 3i42_A Response regulator rece 100.0 1.2E-27 5.2E-32 185.3 14.1 120 1-121 1-123 (127)
57 3lua_A Response regulator rece 100.0 8.5E-28 3.6E-32 186.3 13.1 121 1-121 3-128 (140)
58 3kht_A Response regulator; PSI 100.0 3.3E-27 1.4E-31 182.7 15.7 119 2-120 5-128 (144)
59 3n0r_A Response regulator; sig 100.0 4.1E-28 1.7E-32 188.1 10.9 118 1-121 159-278 (286)
60 1k66_A Phytochrome response re 100.0 3.7E-27 1.6E-31 182.4 15.6 119 2-120 6-138 (149)
61 1k68_A Phytochrome response re 100.0 8.7E-27 3.7E-31 180.2 16.8 118 2-119 2-130 (140)
62 3cz5_A Two-component response 99.9 1.2E-26 5E-31 179.4 16.3 121 1-121 3-126 (153)
63 1p6q_A CHEY2; chemotaxis, sign 99.9 2.7E-27 1.1E-31 183.3 12.7 117 4-120 8-127 (129)
64 1yio_A Response regulatory pro 99.9 2.6E-27 1.1E-31 183.3 12.6 120 1-120 1-122 (208)
65 1i3c_A Response regulator RCP1 99.9 2.1E-26 8.9E-31 177.9 17.2 117 3-119 9-136 (149)
66 1kgs_A DRRD, DNA binding respo 99.9 1.5E-26 6.4E-31 178.8 16.2 120 1-120 1-120 (225)
67 3cg0_A Response regulator rece 99.9 1.1E-26 4.8E-31 179.5 15.4 118 3-121 10-129 (140)
68 3f6c_A Positive transcription 99.9 6.6E-27 2.8E-31 180.9 13.4 119 3-121 2-121 (134)
69 3bre_A Probable two-component 99.9 4.5E-27 1.9E-31 181.9 12.3 118 3-120 19-139 (358)
70 2pln_A HP1043, response regula 99.9 4.1E-26 1.7E-30 176.2 17.2 116 3-122 19-135 (137)
71 1dc7_A NTRC, nitrogen regulati 99.9 1.1E-29 4.6E-34 197.6 -1.8 121 1-121 1-122 (124)
72 3eqz_A Response regulator; str 99.9 2.3E-27 9.8E-32 183.6 9.8 120 1-121 1-126 (135)
73 2qsj_A DNA-binding response re 99.9 1.2E-26 5.2E-31 179.3 13.3 121 1-121 1-125 (154)
74 2qv0_A Protein MRKE; structura 99.9 2.2E-26 9.4E-31 177.7 14.5 115 4-120 11-127 (143)
75 3eul_A Possible nitrate/nitrit 99.9 6.7E-26 2.8E-30 174.9 16.8 118 4-121 17-136 (152)
76 3c97_A Signal transduction his 99.9 7.2E-27 3E-31 180.7 11.1 116 2-120 10-130 (140)
77 2rdm_A Response regulator rece 99.9 5.3E-26 2.2E-30 175.5 15.4 117 3-121 6-124 (132)
78 2gwr_A DNA-binding response re 99.9 3.5E-26 1.5E-30 176.6 14.4 120 1-121 4-123 (238)
79 2oqr_A Sensory transduction pr 99.9 4.4E-26 1.8E-30 176.0 14.3 119 1-120 3-121 (230)
80 2b4a_A BH3024; 10175646, struc 99.9 8.7E-27 3.7E-31 180.2 9.7 115 3-120 16-131 (138)
81 2qvg_A Two component response 99.9 1.1E-25 4.6E-30 173.6 15.0 118 3-120 8-135 (143)
82 1ys7_A Transcriptional regulat 99.9 8.4E-26 3.5E-30 174.3 13.4 120 1-120 6-125 (233)
83 3ilh_A Two component response 99.9 7.4E-25 3.1E-29 168.7 16.6 118 3-120 10-139 (146)
84 2j48_A Two-component sensor ki 99.9 2.8E-25 1.2E-29 171.2 12.0 115 2-119 1-117 (119)
85 1a2o_A CHEB methylesterase; ba 99.9 3E-24 1.3E-28 165.0 15.2 119 1-120 1-133 (349)
86 3kto_A Response regulator rece 99.9 8.2E-25 3.5E-29 168.4 11.8 118 4-121 8-127 (136)
87 1p2f_A Response regulator; DRR 99.9 5.7E-24 2.4E-28 163.3 15.3 118 1-121 1-118 (220)
88 3kyj_B CHEY6 protein, putative 99.9 2.7E-24 1.1E-28 165.3 9.4 116 3-118 14-143 (145)
89 1a04_A Nitrate/nitrite respons 99.9 2.1E-22 8.8E-27 154.0 16.3 118 4-121 7-126 (215)
90 2hqr_A Putative transcriptiona 99.9 1.7E-22 7.2E-27 154.5 15.8 113 4-120 2-115 (223)
91 1qo0_D AMIR; binding protein, 99.9 3.9E-23 1.7E-27 158.3 10.2 113 3-120 13-125 (196)
92 3cwo_X Beta/alpha-barrel prote 99.9 1.4E-21 6E-26 148.9 8.8 98 1-119 1-100 (237)
93 3c3w_A Two component transcrip 99.8 1E-19 4.4E-24 137.8 9.3 118 3-120 2-121 (225)
94 3luf_A Two-component system re 99.8 4.4E-19 1.9E-23 134.0 7.9 110 1-112 3-112 (259)
95 3klo_A Transcriptional regulat 99.6 7E-16 2.9E-20 114.9 6.0 117 3-119 8-128 (225)
96 1w25_A Stalked-cell differenti 98.7 1.3E-06 5.5E-11 59.3 15.1 116 2-119 152-269 (459)
97 2vyc_A Biodegradative arginine 98.2 3.9E-05 1.6E-09 50.5 12.1 114 4-117 2-130 (755)
98 1ccw_A Protein (glutamate muta 97.3 0.0093 3.9E-07 36.2 13.9 118 3-121 4-137 (137)
99 2yxb_A Coenzyme B12-dependent 97.2 0.0094 3.9E-07 36.2 12.2 116 4-119 20-144 (161)
100 3fkq_A NTRC-like two-domain pr 96.7 0.036 1.5E-06 32.7 11.8 103 1-117 20-125 (373)
101 2ayx_A Sensor kinase protein R 94.7 0.034 1.4E-06 32.9 4.6 55 2-63 11-65 (254)
102 3dii_A Short-chain dehydrogena 92.8 0.54 2.3E-05 25.7 9.4 82 1-82 1-83 (247)
103 2q5c_A NTRC family transcripti 92.6 0.58 2.4E-05 25.5 12.0 118 1-118 3-139 (196)
104 2i2x_B MTAC, methyltransferase 92.4 0.61 2.5E-05 25.4 11.8 105 9-119 134-243 (258)
105 1y80_A Predicted cobalamin bin 90.6 0.79 3.3E-05 24.7 6.7 103 9-117 99-208 (210)
106 3ezx_A MMCP 1, monomethylamine 89.9 0.65 2.8E-05 25.2 5.8 91 9-102 103-202 (215)
107 2ehd_A Oxidoreductase, oxidore 89.5 1.2 4.9E-05 23.7 7.9 81 1-81 4-85 (234)
108 1xrs_B D-lysine 5,6-aminomutas 89.0 1.3 5.3E-05 23.5 8.8 110 9-120 131-258 (262)
109 2r6o_A Putative diguanylate cy 88.7 0.43 1.8E-05 26.3 4.2 106 9-116 160-278 (294)
110 3ius_A Uncharacterized conserv 88.5 0.32 1.3E-05 27.1 3.4 52 1-53 4-55 (286)
111 2xij_A Methylmalonyl-COA mutas 88.3 1.4 5.9E-05 23.2 12.7 115 4-121 606-736 (762)
112 3ic5_A Putative saccharopine d 87.7 1.6 6.5E-05 22.9 7.1 91 1-100 4-97 (118)
113 2nwq_A Probable short-chain de 86.9 1.4 5.7E-05 23.2 5.8 58 1-58 20-80 (272)
114 2bas_A YKUI protein; EAL domai 86.7 0.67 2.8E-05 25.1 4.2 106 11-116 155-276 (431)
115 1r8j_A KAIA; circadian clock p 84.3 2.3 9.7E-05 21.9 8.8 76 5-82 12-89 (289)
116 1qdl_B Protein (anthranilate s 84.3 0.7 2.9E-05 25.0 3.3 81 3-83 2-87 (195)
117 1wyz_A Putative S-adenosylmeth 83.3 2.5 0.00011 21.6 7.4 93 4-98 33-136 (242)
118 2vpi_A GMP synthase; guanine m 82.6 0.98 4.1E-05 24.1 3.5 51 1-52 23-73 (218)
119 1qv9_A F420-dependent methylen 82.5 2.7 0.00011 21.5 7.6 79 24-103 30-120 (283)
120 1i1q_B Anthranilate synthase c 82.2 2.2 9.3E-05 22.0 5.2 76 4-80 2-82 (192)
121 3bwc_A Spermidine synthase; SA 81.4 3 0.00012 21.2 5.6 78 3-80 120-208 (304)
122 3dr5_A Putative O-methyltransf 80.7 1.5 6.2E-05 23.0 3.8 75 3-80 82-161 (221)
123 1wl8_A GMP synthase [glutamine 79.2 3.6 0.00015 20.8 5.9 79 4-83 2-82 (189)
124 3pfm_A Ggdef domain protein; P 78.9 1.9 7.8E-05 22.5 3.9 94 11-106 135-241 (243)
125 1xj5_A Spermidine synthase 1; 78.7 3.7 0.00015 20.7 6.4 78 3-80 145-233 (334)
126 2z1m_A GDP-D-mannose dehydrata 78.7 3.7 0.00015 20.7 9.8 82 1-82 1-127 (345)
127 2o07_A Spermidine synthase; st 77.9 1.6 6.9E-05 22.8 3.4 77 3-80 120-207 (304)
128 1wbh_A KHG/KDPG aldolase; lyas 77.5 4 0.00017 20.5 7.8 81 29-113 21-104 (214)
129 3gjy_A Spermidine synthase; AP 76.6 4.2 0.00018 20.3 5.3 72 3-74 114-193 (317)
130 1req_A Methylmalonyl-COA mutas 76.6 4.2 0.00018 20.3 13.0 114 4-118 598-725 (727)
131 3l9w_A Glutathione-regulated p 76.2 4.3 0.00018 20.2 8.2 93 3-103 28-122 (413)
132 1gpm_A GMP synthetase, XMP ami 75.7 2.7 0.00011 21.5 4.0 51 2-53 7-57 (525)
133 2b2c_A Spermidine synthase; be 75.5 2.3 9.6E-05 21.9 3.5 77 3-80 133-220 (314)
134 2r6j_A Eugenol synthase 1; phe 75.4 3.2 0.00014 21.0 4.3 54 1-54 10-67 (318)
135 3kzp_A LMO0111 protein, putati 74.8 0.98 4.1E-05 24.1 1.5 86 19-105 134-233 (235)
136 1iow_A DD-ligase, DDLB, D-ALA\ 74.4 2.6 0.00011 21.6 3.6 61 1-61 1-70 (306)
137 1ka9_H Imidazole glycerol phos 74.0 2.5 0.00011 21.6 3.5 51 1-61 1-51 (200)
138 1id1_A Putative potassium chan 73.7 5 0.00021 19.8 9.3 111 2-119 26-138 (153)
139 1d4a_A DT-diaphorase, quinone 72.2 5.5 0.00023 19.6 5.0 32 1-32 1-39 (273)
140 3hv8_A Protein FIMX; EAL phosp 71.6 4.4 0.00018 20.2 4.2 94 15-109 155-260 (268)
141 1uir_A Polyamine aminopropyltr 71.5 5.4 0.00023 19.7 4.6 76 3-79 102-192 (314)
142 3lab_A Putative KDPG (2-keto-3 70.7 5.9 0.00025 19.4 8.6 79 31-113 20-101 (217)
143 1u9c_A APC35852; structural ge 70.6 5.9 0.00025 19.4 5.1 33 1-33 4-49 (224)
144 2v82_A 2-dehydro-3-deoxy-6-pho 70.2 6.1 0.00025 19.4 9.3 57 55-112 39-95 (212)
145 1rpn_A GDP-mannose 4,6-dehydra 69.7 6.2 0.00026 19.3 4.9 34 1-34 13-46 (335)
146 1iy9_A Spermidine synthase; ro 69.6 4.8 0.0002 20.0 4.1 78 2-80 99-187 (275)
147 1z0s_A Probable inorganic poly 67.5 6.4 0.00027 19.2 4.4 70 3-82 30-99 (278)
148 2hnk_A SAM-dependent O-methylt 67.4 7 0.00029 19.0 7.1 67 3-71 86-170 (239)
149 1wwk_A Phosphoglycerate dehydr 65.1 7.7 0.00032 18.7 5.2 94 1-105 1-98 (307)
150 2ift_A Putative methylase HI07 63.6 7.3 0.00031 18.9 4.0 42 14-55 40-85 (201)
151 3osu_A 3-oxoacyl-[acyl-carrier 63.5 8.3 0.00035 18.6 8.4 82 1-82 3-90 (246)
152 1xm3_A Thiazole biosynthesis p 62.2 8.7 0.00037 18.4 10.1 97 17-116 117-225 (264)
153 3bul_A Methionine synthase; tr 61.9 8.8 0.00037 18.4 8.5 81 9-89 109-194 (579)
154 1e6u_A GDP-fucose synthetase; 61.6 9 0.00038 18.4 5.9 56 1-56 1-65 (321)
155 1vhc_A Putative KHG/KDPG aldol 61.5 9 0.00038 18.3 10.6 93 19-115 11-107 (224)
156 2p2s_A Putative oxidoreductase 61.3 9.1 0.00038 18.3 6.2 103 1-114 2-110 (336)
157 3fwz_A Inner membrane protein 61.2 9.1 0.00038 18.3 11.3 105 3-118 31-137 (140)
158 2ekc_A AQ_1548, tryptophan syn 60.8 9.2 0.00039 18.3 10.7 69 39-107 37-133 (262)
159 2i7c_A Spermidine synthase; tr 60.0 9.6 0.0004 18.2 6.4 77 3-80 103-190 (283)
160 3hvb_A Protein FIMX; EAL phosp 59.7 9.7 0.00041 18.2 8.3 96 12-108 321-428 (437)
161 1ek6_A UDP-galactose 4-epimera 59.6 9.7 0.00041 18.1 8.0 33 1-33 1-33 (348)
162 2g4r_A MOGA, molybdopterin bio 58.5 10 0.00043 18.0 4.6 53 4-56 7-72 (160)
163 2e6f_A Dihydroorotate dehydrog 58.4 9.1 0.00038 18.3 3.8 60 62-121 232-298 (314)
164 1qop_A Tryptophan synthase alp 58.2 10 0.00043 18.0 8.4 96 5-102 126-233 (268)
165 1mxs_A KDPG aldolase; 2-keto-3 58.2 10 0.00043 18.0 9.6 96 16-115 17-116 (225)
166 3hut_A Putative branched-chain 57.4 11 0.00044 17.9 9.6 101 3-105 140-251 (358)
167 1o2d_A Alcohol dehydrogenase, 57.1 11 0.00045 17.9 4.6 64 3-69 41-118 (371)
168 1sui_A Caffeoyl-COA O-methyltr 56.9 11 0.00045 17.9 7.3 75 3-79 105-188 (247)
169 3gfz_A Klebsiella pneumoniae B 56.4 3.4 0.00014 20.9 1.3 94 10-105 289-395 (413)
170 1vlj_A NADH-dependent butanol 56.3 11 0.00047 17.8 7.8 64 3-69 44-121 (407)
171 3jr2_A Hexulose-6-phosphate sy 55.8 11 0.00047 17.8 5.0 36 34-70 45-81 (218)
172 2avd_A Catechol-O-methyltransf 55.5 11 0.00048 17.7 5.4 66 3-70 95-167 (229)
173 1ws6_A Methyltransferase; stru 55.3 11 0.00048 17.7 5.6 66 3-70 64-133 (171)
174 1rrm_A Lactaldehyde reductase; 54.8 12 0.00049 17.7 5.5 78 3-83 32-141 (386)
175 3cbg_A O-methyltransferase; cy 54.0 12 0.00051 17.6 6.7 67 3-71 98-171 (232)
176 3mz0_A Inositol 2-dehydrogenas 53.7 12 0.00051 17.5 10.8 104 1-115 1-111 (344)
177 1tlt_A Putative oxidoreductase 52.7 13 0.00053 17.5 4.4 98 1-113 3-108 (319)
178 3dm5_A SRP54, signal recogniti 52.4 13 0.00054 17.4 9.6 102 2-103 128-248 (443)
179 2fhp_A Methylase, putative; al 52.3 13 0.00054 17.4 8.4 69 3-71 68-141 (187)
180 2p41_A Type II methyltransfera 52.1 13 0.00054 17.4 4.8 58 44-116 146-208 (305)
181 1o4u_A Type II quinolic acid p 51.9 13 0.00055 17.4 4.7 70 28-100 196-265 (285)
182 2pt6_A Spermidine synthase; tr 51.9 13 0.00055 17.4 7.4 77 3-80 141-228 (321)
183 2qfm_A Spermine synthase; sper 51.5 13 0.00056 17.3 5.4 55 3-57 212-278 (364)
184 1zx0_A Guanidinoacetate N-meth 51.2 13 0.00056 17.3 3.9 53 4-56 85-138 (236)
185 1dl5_A Protein-L-isoaspartate 50.8 14 0.00057 17.3 4.2 64 3-69 101-166 (317)
186 2vpt_A Lipolytic enzyme; ester 50.8 14 0.00057 17.3 6.9 82 4-85 7-131 (215)
187 3e70_C DPA, signal recognition 50.7 14 0.00057 17.3 7.8 102 2-103 157-277 (328)
188 2is8_A Molybdopterin biosynthe 50.1 14 0.00059 17.2 4.7 53 4-56 5-72 (164)
189 2b4l_A Glycine betaine-binding 49.8 14 0.00059 17.2 5.4 51 11-62 177-228 (268)
190 3dqq_A Putative tRNA synthase; 49.5 14 0.0006 17.2 4.4 64 4-70 4-67 (421)
191 2cfc_A 2-(R)-hydroxypropyl-COM 49.3 14 0.0006 17.1 8.7 81 1-81 1-87 (250)
192 2g2c_A Putative molybdenum cof 47.6 12 0.0005 17.6 2.9 53 4-56 9-79 (167)
193 3cs3_A Sugar-binding transcrip 47.4 13 0.00055 17.3 3.1 62 13-80 25-86 (277)
194 3bbl_A Regulatory protein of L 47.4 15 0.00065 16.9 8.7 64 13-81 25-94 (287)
195 2v5j_A 2,4-dihydroxyhept-2-ENE 47.3 15 0.00065 16.9 11.5 102 14-115 26-131 (287)
196 2pv7_A T-protein [includes: ch 47.2 15 0.00065 16.9 9.8 97 3-102 22-119 (298)
197 2yy8_A ATRM56, UPF0106 protein 47.2 15 0.00065 16.9 4.7 78 3-85 31-112 (201)
198 1sw5_A Osmoprotection protein 46.8 16 0.00066 16.9 5.5 41 12-52 19-62 (275)
199 2w2k_A D-mandelate dehydrogena 46.1 16 0.00068 16.8 3.6 96 1-98 1-105 (348)
200 3kzv_A Uncharacterized oxidore 46.1 16 0.00068 16.8 6.3 82 1-82 1-86 (254)
201 1ep3_A Dihydroorotate dehydrog 45.7 16 0.00069 16.8 6.9 59 62-121 230-294 (311)
202 1vbf_A 231AA long hypothetical 45.5 15 0.00062 17.1 3.1 57 2-60 92-148 (231)
203 2qm3_A Predicted methyltransfe 45.4 12 0.00052 17.5 2.7 77 2-80 195-276 (373)
204 1jg1_A PIMT;, protein-L-isoasp 45.4 4.8 0.0002 20.0 0.7 63 3-68 115-179 (235)
205 3bfj_A 1,3-propanediol oxidore 45.2 17 0.0007 16.7 6.1 64 3-69 34-112 (387)
206 2aef_A Calcium-gated potassium 44.7 17 0.00071 16.7 7.1 92 3-101 31-123 (234)
207 2esr_A Methyltransferase; stru 44.1 17 0.00073 16.6 5.1 67 3-70 55-124 (177)
208 3exr_A RMPD (hexulose-6-phosph 43.7 18 0.00074 16.6 5.3 16 87-102 125-140 (221)
209 1a53_A IGPS, indole-3-glycerol 43.5 18 0.00074 16.6 10.7 90 12-103 138-232 (247)
210 1wv9_A Rhodanese homolog TT165 43.4 11 0.00045 17.9 2.2 66 34-102 5-83 (94)
211 3a28_C L-2.3-butanediol dehydr 43.2 18 0.00075 16.6 8.4 80 1-80 1-87 (258)
212 2htm_A Thiazole biosynthesis p 43.1 18 0.00075 16.5 7.1 99 17-117 115-226 (268)
213 2g76_A 3-PGDH, D-3-phosphoglyc 42.1 19 0.00078 16.5 6.0 97 3-110 27-126 (335)
214 3hh1_A Tetrapyrrole methylase 42.0 19 0.00078 16.4 5.7 76 4-82 33-116 (117)
215 1h7n_A 5-aminolaevulinic acid 42.0 19 0.00079 16.4 3.9 61 34-97 241-304 (342)
216 1yde_A Retinal dehydrogenase/r 41.9 19 0.00079 16.4 8.8 81 2-82 9-90 (270)
217 3etn_A Putative phosphosugar i 41.9 19 0.00079 16.4 6.2 79 13-92 72-153 (220)
218 1pv8_A Delta-aminolevulinic ac 40.7 20 0.00082 16.3 3.9 64 32-98 228-294 (330)
219 3adn_A Spermidine synthase; am 40.5 5.6 0.00024 19.6 0.4 69 3-72 108-188 (294)
220 3iuu_A MLRC-like, putative met 40.5 20 0.00083 16.3 6.6 99 19-118 52-177 (495)
221 1wa3_A 2-keto-3-deoxy-6-phosph 40.4 20 0.00083 16.3 9.3 23 9-31 18-40 (205)
222 2r6z_A UPF0341 protein in RSP 40.1 20 0.00084 16.3 9.0 97 2-108 105-221 (258)
223 1req_B Methylmalonyl-COA mutas 39.7 20 0.00085 16.2 7.2 104 15-120 527-635 (637)
224 3ezy_A Dehydrogenase; structur 39.3 21 0.00086 16.2 8.4 103 1-115 1-109 (344)
225 1wv2_A Thiazole moeity, thiazo 38.7 21 0.00088 16.1 9.7 99 16-117 125-235 (265)
226 3e18_A Oxidoreductase; dehydro 38.5 21 0.00089 16.1 10.7 99 1-112 3-107 (359)
227 3k7p_A Ribose 5-phosphate isom 38.5 20 0.00082 16.3 2.9 32 1-32 21-54 (179)
228 2q1w_A Putative nucleotide sug 38.2 21 0.0009 16.1 4.8 32 1-33 21-52 (333)
229 1qyd_A Pinoresinol-lariciresin 37.3 22 0.00093 16.0 3.5 34 1-34 1-36 (313)
230 3l07_A Bifunctional protein fo 37.0 22 0.00094 16.0 5.1 63 5-67 39-114 (285)
231 3h11_A CAsp8 and FADD-like apo 36.8 19 0.00078 16.5 2.6 49 4-52 45-102 (272)
232 3gz3_A Dihydroorotate dehydrog 36.8 23 0.00095 16.0 4.6 60 62-121 265-331 (354)
233 2fpo_A Methylase YHHF; structu 36.6 23 0.00095 15.9 6.0 66 3-71 78-147 (202)
234 2qzs_A Glycogen synthase; glyc 36.3 23 0.00097 15.9 9.0 69 48-120 368-441 (485)
235 1nff_A Putative oxidoreductase 35.8 23 0.00098 15.9 8.0 80 3-82 8-89 (260)
236 2qy9_A Cell division protein F 35.6 24 0.00099 15.8 9.9 102 2-103 127-253 (309)
237 3oa2_A WBPB; oxidoreductase, s 35.6 10 0.00042 18.1 1.0 106 1-112 3-115 (318)
238 2nm0_A Probable 3-oxacyl-(acyl 35.1 24 0.001 15.8 5.2 33 1-33 20-52 (253)
239 3lop_A Substrate binding perip 34.8 24 0.001 15.8 8.2 85 5-91 145-239 (364)
240 3c3y_A Pfomt, O-methyltransfer 34.7 24 0.001 15.8 7.1 67 3-71 96-170 (237)
241 3hl0_A Maleylacetate reductase 34.4 25 0.001 15.7 3.3 74 3-80 35-117 (353)
242 2yxe_A Protein-L-isoaspartate 34.2 7 0.00029 19.0 0.0 71 3-79 103-175 (215)
243 2ab0_A YAJL; DJ-1/THIJ superfa 34.1 25 0.001 15.7 5.2 78 1-78 1-103 (205)
244 1t2a_A GDP-mannose 4,6 dehydra 34.1 25 0.0011 15.7 5.0 33 1-33 23-55 (375)
245 1rj9_A FTSY, signal recognitio 33.8 25 0.0011 15.7 5.3 101 3-103 131-256 (304)
246 2yvq_A Carbamoyl-phosphate syn 33.7 25 0.0011 15.6 4.8 34 3-36 25-60 (143)
247 1thf_D HISF protein; thermophI 33.6 25 0.0011 15.6 8.6 81 34-115 152-242 (253)
248 1ka9_F Imidazole glycerol phos 33.6 25 0.0011 15.6 7.6 79 35-114 154-242 (252)
249 1b0a_A Protein (fold bifunctio 33.5 26 0.0011 15.6 3.9 53 5-57 38-102 (288)
250 1geg_A Acetoin reductase; SDR 33.1 26 0.0011 15.6 10.0 82 1-82 1-87 (256)
251 2ekl_A D-3-phosphoglycerate de 32.9 26 0.0011 15.6 5.6 93 4-107 7-102 (313)
252 1vkr_A Mannitol-specific PTS s 32.9 26 0.0011 15.6 6.8 75 3-90 14-95 (125)
253 3k4h_A Putative transcriptiona 32.9 26 0.0011 15.6 8.5 63 13-80 30-98 (292)
254 1h5y_A HISF; histidine biosynt 32.4 27 0.0011 15.5 7.7 69 34-103 155-227 (253)
255 1usg_A Leucine-specific bindin 31.8 27 0.0011 15.5 10.1 102 3-106 139-251 (346)
256 2hmt_A YUAA protein; RCK, KTN, 31.6 27 0.0012 15.4 5.0 90 2-100 29-121 (144)
257 3l6e_A Oxidoreductase, short-c 31.5 28 0.0012 15.4 8.1 81 1-81 1-84 (235)
258 3igs_A N-acetylmannosamine-6-p 31.4 28 0.0012 15.4 11.1 101 15-118 118-227 (232)
259 3eld_A Methyltransferase; flav 30.7 28 0.0012 15.4 5.9 22 42-64 143-164 (300)
260 3h5l_A Putative branched-chain 30.6 29 0.0012 15.3 6.9 90 3-93 165-265 (419)
261 1r9l_A Glycine betaine-binding 30.2 29 0.0012 15.3 5.9 49 10-59 19-69 (309)
262 1vjg_A Putative lipase from th 30.1 28 0.0012 15.4 2.5 55 4-58 22-100 (218)
263 2a9v_A GMP synthase; NP_394403 30.0 5.8 0.00024 19.5 -1.0 73 4-80 15-91 (212)
264 1w0m_A TIM, triosephosphate is 30.0 29 0.0012 15.3 11.3 102 13-118 102-222 (226)
265 1yt8_A Thiosulfate sulfurtrans 29.9 29 0.0012 15.3 8.9 95 3-97 64-211 (539)
266 2rin_A Putative glycine betain 29.8 29 0.0012 15.3 6.2 51 11-62 19-70 (298)
267 2nxc_A L11 mtase, ribosomal pr 29.8 29 0.0012 15.3 4.0 77 2-83 142-219 (254)
268 2o4u_X Dimeric dihydrodiol deh 29.7 30 0.0012 15.2 6.7 100 1-113 1-109 (334)
269 1inl_A Spermidine synthase; be 29.6 30 0.0012 15.2 6.8 77 3-80 115-203 (296)
270 1oi4_A Hypothetical protein YH 29.4 30 0.0013 15.2 4.7 34 1-34 22-58 (193)
271 3clk_A Transcription regulator 29.4 30 0.0013 15.2 7.5 64 14-82 26-96 (290)
272 1gmx_A GLPE protein; transfera 29.3 30 0.0013 15.2 4.0 69 33-103 7-90 (108)
273 1uay_A Type II 3-hydroxyacyl-C 29.2 30 0.0013 15.2 4.4 33 1-33 1-33 (242)
274 3ll7_A Putative methyltransfer 29.2 30 0.0013 15.2 5.5 59 3-61 116-178 (410)
275 3ffs_A Inosine-5-monophosphate 28.9 31 0.0013 15.2 11.3 97 4-102 158-274 (400)
276 3m6w_A RRNA methylase; rRNA me 28.9 31 0.0013 15.2 5.9 52 4-55 128-179 (464)
277 3evn_A Oxidoreductase, GFO/IDH 28.7 31 0.0013 15.1 4.3 98 4-112 7-109 (329)
278 2gjl_A Hypothetical protein PA 28.7 31 0.0013 15.1 12.5 83 18-102 110-200 (328)
279 2px0_A Flagellar biosynthesis 28.6 31 0.0013 15.1 8.6 102 2-103 134-248 (296)
280 3e9m_A Oxidoreductase, GFO/IDH 28.5 31 0.0013 15.1 7.3 100 1-112 3-109 (330)
281 3c0k_A UPF0064 protein YCCW; P 28.5 31 0.0013 15.1 6.4 53 3-55 244-302 (396)
282 2w70_A Biotin carboxylase; lig 28.1 32 0.0013 15.1 5.6 35 1-36 1-35 (449)
283 1y0e_A Putative N-acetylmannos 28.0 32 0.0013 15.1 6.4 87 31-119 125-222 (223)
284 1rzu_A Glycogen synthase 1; gl 27.8 32 0.0013 15.0 8.7 69 48-120 367-440 (485)
285 3bw2_A 2-nitropropane dioxygen 27.7 32 0.0014 15.0 11.6 83 18-102 137-236 (369)
286 1p99_A Hypothetical protein PG 27.4 32 0.0014 15.0 4.1 49 4-52 42-92 (295)
287 3foj_A Uncharacterized protein 27.4 32 0.0014 15.0 5.7 66 34-100 5-84 (100)
288 3eme_A Rhodanese-like domain p 27.4 33 0.0014 15.0 5.0 39 63-101 45-85 (103)
289 3grp_A 3-oxoacyl-(acyl carrier 27.4 33 0.0014 15.0 8.3 81 2-82 27-109 (266)
290 3hix_A ALR3790 protein; rhodan 27.3 33 0.0014 15.0 5.4 36 63-98 40-78 (106)
291 3cni_A Putative ABC type-2 tra 27.2 33 0.0014 15.0 6.4 61 3-70 11-72 (156)
292 1qxn_A SUD, sulfide dehydrogen 27.1 33 0.0014 15.0 3.1 66 33-99 25-109 (137)
293 3i4f_A 3-oxoacyl-[acyl-carrier 26.7 34 0.0014 14.9 7.1 80 1-80 6-91 (264)
294 1xea_A Oxidoreductase, GFO/IDH 26.6 34 0.0014 14.9 6.3 103 1-114 1-107 (323)
295 3ff4_A Uncharacterized protein 26.6 17 0.0007 16.7 0.9 94 3-99 5-108 (122)
296 3ij5_A 3-deoxy-D-manno-octulos 26.3 34 0.0014 14.9 7.5 81 36-120 40-138 (211)
297 3euw_A MYO-inositol dehydrogen 26.1 34 0.0014 14.9 8.1 99 3-113 5-108 (344)
298 1xs5_A 29 kDa protein, membran 26.1 34 0.0014 14.9 5.2 45 10-54 13-59 (241)
299 1j8m_F SRP54, signal recogniti 25.8 35 0.0015 14.8 9.6 102 2-103 126-248 (297)
300 2vxo_A GMP synthase [glutamine 25.8 35 0.0015 14.8 3.1 49 3-52 30-78 (697)
301 2ywb_A GMP synthase [glutamine 25.5 35 0.0015 14.8 3.3 47 5-52 2-48 (503)
302 3ezl_A Acetoacetyl-COA reducta 25.4 35 0.0015 14.8 8.7 81 1-81 11-98 (256)
303 2f1f_A Acetolactate synthase i 25.3 36 0.0015 14.8 2.8 30 1-30 1-32 (164)
304 2ekp_A 2-deoxy-D-gluconate 3-d 25.2 36 0.0015 14.8 9.4 76 1-81 1-77 (239)
305 1orr_A CDP-tyvelose-2-epimeras 24.8 36 0.0015 14.7 7.4 32 1-33 1-32 (347)
306 1vl2_A Argininosuccinate synth 24.6 37 0.0015 14.7 5.0 55 1-55 13-75 (421)
307 2oyr_A UPF0341 protein YHIQ; a 24.5 37 0.0015 14.7 6.7 97 2-106 110-222 (258)
308 3hcw_A Maltose operon transcri 24.4 37 0.0016 14.7 8.7 64 13-81 29-98 (295)
309 1dxe_A 2-dehydro-3-deoxy-galac 24.3 37 0.0016 14.7 12.0 99 17-115 9-111 (256)
310 3gk5_A Uncharacterized rhodane 24.2 37 0.0016 14.6 5.2 56 48-103 17-86 (108)
311 3duw_A OMT, O-methyltransferas 24.0 38 0.0016 14.6 7.4 75 3-80 84-165 (223)
312 3e05_A Precorrin-6Y C5,15-meth 23.9 38 0.0016 14.6 2.5 76 3-82 65-143 (204)
313 3nrc_A Enoyl-[acyl-carrier-pro 23.8 38 0.0016 14.6 8.3 77 3-80 27-109 (280)
314 3ot1_A 4-methyl-5(B-hydroxyeth 23.6 38 0.0016 14.6 5.2 33 1-33 8-43 (208)
315 1qb7_A APRT, adenine phosphori 23.6 38 0.0016 14.6 4.3 29 55-83 176-205 (236)
316 1wcw_A Uroporphyrinogen III sy 23.4 39 0.0016 14.5 11.1 97 15-121 143-259 (261)
317 2a5l_A Trp repressor binding p 23.3 39 0.0016 14.5 3.9 33 1-33 3-41 (200)
318 2d1y_A Hypothetical protein TT 23.3 39 0.0016 14.5 5.8 77 3-81 7-84 (256)
319 1g5t_A COB(I)alamin adenosyltr 23.3 39 0.0016 14.5 6.3 51 40-91 114-169 (196)
320 2fgc_A Acetolactate synthase, 23.1 39 0.0016 14.5 3.5 34 1-34 27-62 (193)
321 3jy6_A Transcriptional regulat 23.0 39 0.0017 14.5 7.7 60 15-80 26-91 (276)
322 3lbf_A Protein-L-isoaspartate 23.0 18 0.00074 16.6 0.5 65 2-69 99-165 (210)
323 3d8u_A PURR transcriptional re 23.0 39 0.0017 14.5 7.7 55 13-70 20-80 (275)
324 3l6g_A Betaine ABC transporter 22.8 40 0.0017 14.5 7.6 52 12-64 15-67 (256)
325 2qv7_A Diacylglycerol kinase D 22.8 40 0.0017 14.5 9.2 101 1-115 23-138 (337)
326 2b78_A Hypothetical protein SM 22.6 40 0.0017 14.4 6.5 52 3-54 236-293 (385)
327 3lkb_A Probable branched-chain 22.6 40 0.0017 14.4 8.1 88 3-92 144-242 (392)
328 2w6r_A Imidazole glycerol phos 22.5 40 0.0017 14.4 7.7 67 35-102 158-228 (266)
329 1sqg_A SUN protein, FMU protei 22.5 40 0.0017 14.4 3.8 53 3-55 271-324 (429)
330 2p1z_A Phosphoribosyltransfera 22.4 25 0.001 15.7 1.1 17 58-74 127-143 (180)
331 3i23_A Oxidoreductase, GFO/IDH 22.4 41 0.0017 14.4 6.9 102 1-114 1-109 (349)
332 1mjf_A Spermidine synthase; sp 22.3 41 0.0017 14.4 8.3 76 3-80 99-191 (281)
333 1mkz_A Molybdenum cofactor bio 22.1 41 0.0017 14.4 7.7 49 5-53 15-76 (172)
334 2pc6_A Probable acetolactate s 22.0 33 0.0014 14.9 1.7 31 1-31 3-34 (165)
335 3m3h_A OPRT, oprtase, orotate 22.0 32 0.0014 15.0 1.6 67 48-116 139-207 (234)
336 1eep_A Inosine 5'-monophosphat 21.9 41 0.0017 14.4 8.0 65 37-102 156-221 (404)
337 2gpy_A O-methyltransferase; st 21.6 42 0.0018 14.3 5.4 67 3-71 79-149 (233)
338 3hvi_A Catechol O-methyltransf 21.5 42 0.0018 14.3 5.4 77 3-80 84-168 (221)
339 3mbh_A Putative phosphomethylp 21.3 43 0.0018 14.3 7.7 76 3-79 8-111 (291)
340 2k0z_A Uncharacterized protein 21.2 39 0.0017 14.5 2.0 31 71-101 53-85 (110)
341 1xgk_A Nitrogen metabolite rep 21.1 43 0.0018 14.3 4.8 32 2-33 5-36 (352)
342 3db2_A Putative NADPH-dependen 21.1 43 0.0018 14.3 7.3 95 4-112 7-108 (354)
343 2h6r_A Triosephosphate isomera 21.0 43 0.0018 14.3 5.6 97 16-116 102-217 (219)
344 2glx_A 1,5-anhydro-D-fructose 21.0 43 0.0018 14.2 5.6 87 15-113 13-105 (332)
345 1vl0_A DTDP-4-dehydrorhamnose 20.8 44 0.0018 14.2 6.1 56 4-59 14-76 (292)
346 3llv_A Exopolyphosphatase-rela 20.8 44 0.0018 14.2 10.9 105 3-119 30-136 (141)
347 1d3g_A Dihydroorotate dehydrog 20.5 44 0.0019 14.2 3.9 61 62-122 285-353 (367)
348 1wxx_A TT1595, hypothetical pr 20.3 45 0.0019 14.2 7.1 53 3-55 232-288 (382)
349 3c3p_A Methyltransferase; NP_9 20.2 45 0.0019 14.2 5.7 74 3-81 82-159 (210)
350 2fn9_A Ribose ABC transporter, 20.2 45 0.0019 14.2 10.3 78 1-81 1-90 (290)
351 2r60_A Glycosyl transferase, g 20.2 45 0.0019 14.1 3.4 42 74-119 382-423 (499)
352 1vmd_A MGS, methylglyoxal synt 20.1 45 0.0019 14.1 6.8 108 5-117 31-170 (178)
No 1
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=100.00 E-value=3.8e-32 Score=212.32 Aligned_cols=122 Identities=30% Similarity=0.590 Sum_probs=119.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|++||||||||+.+|..++..|+.+||+|.+|.||++|++.+++++||+|++|+.||++||+++++++|+..+++|+|++
T Consensus 2 m~~rILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~pii~l 81 (124)
T 1srr_A 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 98859999799999999999999869989995998999999980799889985369999889999999960999989999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 437978999999976998699769798999999999960369
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~ 122 (122)
|++++.+...++.+.|+++|+.|||++++|.++++++|++|+
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~L~~~~ 123 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKS 123 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC--
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 888999999999987998999898999999999999987567
No 2
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.98 E-value=1.2e-31 Score=209.25 Aligned_cols=121 Identities=24% Similarity=0.448 Sum_probs=117.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|++||||||||+.+|..++..|+.+||+|.+|.||.+|++++++++||+||+|+.||++||+++++++|+..+..|||++
T Consensus 2 M~~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~~ii~l 81 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 88878999899999999999999889999998999999999884599899826999999889999999854999859999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.....++.+.|+++|+.|||++++|..+|+++|+++
T Consensus 82 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 122 (136)
T 1mvo_A 82 TAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp ECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 78799999999998699627889899999999999999887
No 3
>3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.98 E-value=4.8e-31 Score=205.71 Aligned_cols=121 Identities=29% Similarity=0.472 Sum_probs=117.5
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 98-66999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|+ +||||||||+.+|+.++.+|+.+||+|.+|.||.+|++.+++.+||+|++|+.||++||+++++++|+.+|++|+|+
T Consensus 1 MsmkrILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvllD~~mp~~~G~el~~~lr~~~~~~piI~ 80 (132)
T 3crn_A 1 MSLKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 99888999959999999999999986997997099999999998579999997044899608999999998489998999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 943797899999997699869976979899999999996036
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+|++++.+...++.+.|+++|+.|||++++|..+|+++|+.+
T Consensus 81 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~L~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 976599999999998799899989799999999999999999
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C
Probab=99.97 E-value=7.4e-31 Score=204.59 Aligned_cols=119 Identities=30% Similarity=0.488 Sum_probs=115.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 986699975998999999999998898999999979999999718998999983655999799999999858--998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii 78 (122)
|++||||||||+.+|..++..|+.+||+|.+|.||.+|++.+++++||+|++|++||++||++++++||+.. +++|||
T Consensus 1 M~~rILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdliilD~~mP~~~G~el~~~ir~~~~~~~iPiI 80 (122)
T 3gl9_A 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 99859999699999999999999879999998999999999983799999851028999889999999838878999899
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99437978999999976998699769798999999999960
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
++|++++.....++.+.|+++|+.|||++++|..+|+++|+
T Consensus 81 ~lT~~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~v~~~L~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 98279999999999987998899798999999999999858
No 5
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.97 E-value=9.4e-31 Score=203.96 Aligned_cols=119 Identities=29% Similarity=0.515 Sum_probs=115.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986699975998999999999998898999-9999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++||||||||+.+|+.++..|+.+||+|. .|+||++|++.+++++||++++|+.||++||+++++++|+..|++|+|+
T Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~g~~v~~~a~~g~~al~~~~~~~~dlii~D~~mP~~~G~e~~~~ir~~~~~~~ii~ 80 (120)
T 1tmy_A 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIV 80 (120)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 99869999199999999999999879989999899999999998369999999636899979999999997587997899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9437978999999976998699769798999999999960
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+|++++.+...++.+.|+.+|+.|||++++|..+++++.+
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v~r 120 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVSK 120 (120)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC-
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf 9742899999999986998999798999999999999709
No 6
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A
Probab=99.97 E-value=1.2e-30 Score=203.42 Aligned_cols=120 Identities=28% Similarity=0.444 Sum_probs=116.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|++||||||||+.+|..++..|+.+||+|.+|+||.+|++.+++.+||+|++|+.||++||+++++++|+ .+++|+|++
T Consensus 1 M~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~e~~~~~r~-~~~~~ii~l 79 (120)
T 3f6p_A 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRK-KYDMPIIML 79 (120)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHT-TCCSCEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 9971999939999999999999988999999899999999997189999998299999999999999981-689958999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.....++.+.|+++|+.|||++++|..+|+++|++|
T Consensus 80 t~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~lrR~ 120 (120)
T 3f6p_A 80 TAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ 120 (120)
T ss_dssp EESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 76799999999997599989979999999999999997679
No 7
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.97 E-value=1.9e-30 Score=202.09 Aligned_cols=119 Identities=24% Similarity=0.348 Sum_probs=113.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858--9985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~ 79 (122)
|.|||||||++.+|..++..|+..||+|..|.||++|++++.+++||+||+|+.||+|||++++++||+.. +++|||+
T Consensus 1 s~rILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdlvllD~~mP~mdG~e~~~~ir~~~~~~~iPVI~ 80 (459)
T 1w25_A 1 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVL 80 (459)
T ss_dssp CCEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 98899995989999999999997898999979999999999627999999979899999999999997086779896899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+||+++.+...++++.|+++||.|||++.+|..+|+.+++.
T Consensus 81 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~rIr~llr~ 121 (459)
T 1w25_A 81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121 (459)
T ss_dssp EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCC
T ss_conf 98899989999998669857985584012001321133330
No 8
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.97 E-value=4.2e-30 Score=200.06 Aligned_cols=119 Identities=21% Similarity=0.357 Sum_probs=116.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
||||||||+.+|..++..|+.+||+|.+|+||++|++.+++++||+|++|+.||++||+++++++|+..+++|+|++|++
T Consensus 2 rILvVdDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~dG~e~~~~lr~~~~~~pii~lt~~ 81 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECC
T ss_conf 89999689999999999999879999998999999999645899899988999998747899999963999818999788
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 978999999976998699769798999999999960369
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~ 122 (122)
++.+...++.+.|+++|+.|||++++|..+|+++|++++
T Consensus 82 ~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~~ 120 (121)
T 2pl1_A 82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 (121)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999986999999798999999999999975746
No 9
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.97 E-value=5.7e-30 Score=199.26 Aligned_cols=121 Identities=21% Similarity=0.381 Sum_probs=117.5
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986-6999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++ ||||||||+.+|..++.+|+.+||+|..++||++|++++++.+||++++|+.||++||+++++++|+..+++|+|+
T Consensus 1 M~~~~ILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~D~~mP~~~G~~ll~~ir~~~~~~pvI~ 80 (126)
T 1dbw_A 1 MQDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 99998999969999999999999987999999899999999976379987971036888882999999996199983999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 943797899999997699869976979899999999996036
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+|++++.+...++.+.|+.+|+.|||++++|..+|++++++.
T Consensus 81 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~a~~~~ 122 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 968899999999998799889989699999999999999999
No 10
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.97 E-value=3.9e-30 Score=200.29 Aligned_cols=120 Identities=23% Similarity=0.392 Sum_probs=116.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+.+||||||++.+|..++.+|+.+||+|.+|+||++|++++.+++||+||+|+ ||++||+++++++|+..|++|||++
T Consensus 3 ~~p~ILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dlvllD~-mp~~dGl~l~~~ir~~~~~~piI~l 81 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVL 81 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999699998989999999999998799999989999999999857999998547-8631289999999986899978999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.+...++.+.|+++|+.|||++++|..+|+++++.+
T Consensus 82 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 122 (142)
T 2qxy_A 82 SAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp ESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 73588899999997689789979899999999999998568
No 11
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.97 E-value=3.8e-30 Score=200.32 Aligned_cols=118 Identities=28% Similarity=0.500 Sum_probs=114.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
-||||||||+.+|..++..|+..||+|.+|.||.+|++.+.+++||+||+|+.||++||+++++++|+..|++|||++||
T Consensus 4 P~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dliilD~~mP~~dGle~~~~ir~~~~~~pvI~lT~ 83 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 98999959999999999999987998999789999999853269877765457899989999999997298994898979
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 79789999999769986997697989999999999603
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+++.+...++++.|+.+||.|||++++|..+++++++.
T Consensus 84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 84 HGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp GGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 89999999999869988975999999999999999999
No 12
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.97 E-value=5.7e-30 Score=199.28 Aligned_cols=120 Identities=23% Similarity=0.349 Sum_probs=115.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+ ||||||||+.+|+.++..|+.+||+|..|.||++|++.+.+++||+|++|+.||++||+++++++|+ .+++|+|++
T Consensus 1 M~-~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~mp~~~G~~l~~~ir~-~~~ipiI~l 78 (121)
T 1zh2_A 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQ-WSAVPVIVL 78 (121)
T ss_dssp -C-EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred CC-EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEE
T ss_conf 98-4999969999999999999987999999888999999997179999998099999897999999997-479909999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 437978999999976998699769798999999999960369
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~ 122 (122)
|++++.+...++.+.|+++|+.|||++++|..+|+++|++++
T Consensus 79 t~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~~ 120 (121)
T 1zh2_A 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 (121)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 785999999999986999999799999999999999988757
No 13
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.97 E-value=5.9e-30 Score=199.18 Aligned_cols=118 Identities=27% Similarity=0.403 Sum_probs=114.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.||||||||+.+|..++.+|+.+||+|..|.||.+|++.+++++||+|++|+.||+|||++++++||+..+++|||++|+
T Consensus 130 ~~iLvvdD~~~~~~~l~~~L~~~g~~v~~a~~g~~Al~~~~~~~~dlil~D~~mP~mdG~e~~~~ir~~~~~~pii~lta 209 (254)
T 2ayx_A 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTA 209 (254)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 98999909899999999999987999999899999999998479989999503689983899999996299997999989
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 79789999999769986997697989999999999603
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+.......++.+.|+++||.|||++++|..++++.+++
T Consensus 210 ~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~r 247 (254)
T 2ayx_A 210 NALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp STTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99999999999869989997989999999999999999
No 14
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.97 E-value=4e-30 Score=200.23 Aligned_cols=121 Identities=19% Similarity=0.308 Sum_probs=117.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+.||||||||+.+|..++.+|+.+||+|.+|.||++|++++++++||+|++|++||++||+++++++|+..+.+|||++
T Consensus 3 mk~rILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~pdlillD~~mp~~~G~~l~~~ir~~~~~~piI~l 82 (137)
T 3cfy_A 3 LRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CCCEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 99769999799999999999999879999998999999999984799999983899999889999999974899848999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.+...++.+.|+++|+.|||++++|..+|+++|+.+
T Consensus 83 t~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 87799999999986798689989899999999999999998
No 15
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630}
Probab=99.97 E-value=8.4e-30 Score=198.27 Aligned_cols=120 Identities=20% Similarity=0.288 Sum_probs=115.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+.||||||||+.++..++..|+.+||+|.+|.||++|++.+.+++||+||+|+.||++||+++++++++ .+++|+|++
T Consensus 3 ~~~kILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlillD~~mP~~dG~el~~~~~~-~~~~piI~l 81 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRN-VTTCPIVYM 81 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCEEEE
T ss_conf 6775999989999999999999987999999899999999886279999997799989986079999983-699989999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.+...++.+.|+++|+.|||++++|..+|+++|+++
T Consensus 82 t~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~~i~~~lrR~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 96289999999998699889989899999999999999973
No 16
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.97 E-value=4.2e-30 Score=200.06 Aligned_cols=117 Identities=26% Similarity=0.432 Sum_probs=112.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6699975998999999999998898999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
+||||||||+.+|..++.+|+..||+|. +|.||++|++.++++.||+||+|+.||+|||++++++||+ .+++|||++|
T Consensus 14 ~rILIVDDd~~~r~~l~~~L~~~G~~vv~~a~~g~eal~~~~~~~pDlillDi~MP~mdGle~~~~ir~-~~~~piiilT 92 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIAS-KRIAPIVVLT 92 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHH-TTCSCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-CCCCCEEEEE
T ss_conf 889998298999999999999869979999899999999998379999999640458607999999985-6999989995
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++++.+...++++.|+++||.|||++++|..+|++++..
T Consensus 93 a~~~~~~~~~al~~Ga~dyl~KP~~~~~l~~~i~~~l~~ 131 (205)
T 1s8n_A 93 AFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp EGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 678899999999829842143899999999999999986
No 17
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.97 E-value=1.2e-29 Score=197.42 Aligned_cols=119 Identities=26% Similarity=0.518 Sum_probs=113.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986699975998999999999998898999999979999999718-9989999836559997999999998589985999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++||||||||+.+|..++..|+ .||+|.+|.||.+|++.+.+. +||+||+|++||++||+++++++|+.+|++|+|+
T Consensus 3 Mn~rILiVDDd~~~~~~l~~~L~-~~~~v~~a~~g~eAl~~l~~~~~~dlvi~D~~mP~~~G~ell~~ir~~~~~~~vI~ 81 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLS-FDFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLM 81 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 99729999499999999999997-79989998899999999985699709998389889870899999998689996899
Q ss_pred EECCCCHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769-986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g-~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+||+++.+...++.+.| +++|+.|||++++|..+|+++++.
T Consensus 82 lt~~~d~~~~~~a~~~G~a~dyl~KP~~~~~L~~~v~~~l~~ 123 (151)
T 3kcn_A 82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 982599999999996789873786999999999999999999
No 18
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.97 E-value=2.3e-29 Score=195.61 Aligned_cols=117 Identities=26% Similarity=0.340 Sum_probs=112.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEEEE
Q ss_conf 699975998999999999998898999999979999999718998999983655999799999999858--998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~~s 81 (122)
||||||||+.+|..++..|+.+||+|.+|.||++|++++++.+||+||+|+.||++||++++++||+.. +++|||++|
T Consensus 9 kILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlillD~~mP~~dG~el~~~ir~~~~~~~iPiI~lT 88 (154)
T 3gt7_A 9 EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 09999799999999999999879999998999999999983899999980899999887999999858455799599998
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++++.+...++.+.|+++||.|||++++|..+|+++|+.
T Consensus 89 a~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~ 127 (154)
T 3gt7_A 89 ILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp CCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 269999999999779887997989999999999999999
No 19
>1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.97 E-value=2.4e-29 Score=195.57 Aligned_cols=120 Identities=25% Similarity=0.376 Sum_probs=116.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|.+||||||||+.++..++..|+.+||+|.+|.||++|++.+++++||+||+|+.||++||+++++++|+ .+++|+|++
T Consensus 1 M~~~ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dliilD~~mP~~dG~e~~~~~r~-~~~~piI~l 79 (122)
T 1zgz_A 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRE-RSTVGIILV 79 (122)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 9972999949999999999999987999999899999999997399989999789899772899999984-799939999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.....++.+.|+++|+.|||++++|..+|+++|++.
T Consensus 80 t~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~R~ 120 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 83699999999998699899979899999999999999872
No 20
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.97 E-value=2.1e-29 Score=195.88 Aligned_cols=119 Identities=25% Similarity=0.448 Sum_probs=114.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+ ||||||||+.+|+.++..|+.+||+|.+|.||++|++.+++++||+|++|+.||++||+++++++++. +++|+|++
T Consensus 1 M~-rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dliilD~~mp~~dG~~~l~~~~~~-~~~pvi~l 78 (120)
T 2a9o_A 1 MK-KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKT-SSVPILML 78 (120)
T ss_dssp -C-EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHH-CCCCEEEE
T ss_pred CC-EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEE
T ss_conf 98-89999799999999999999889999998999999999985799899982999998999999998865-99819999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.....++.+.|+++|+.|||+.++|+.+|+++|+++
T Consensus 79 t~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lrr~ 119 (120)
T 2a9o_A 79 SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRS 119 (120)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC-
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 79899999999998799899989899999999999999775
No 21
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.97 E-value=3.9e-30 Score=200.27 Aligned_cols=121 Identities=21% Similarity=0.350 Sum_probs=116.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985--8998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii 78 (122)
|++||||||||+.+|+.++..|+.+||+|..|.||++|++.+.+++||+||+|+.||++||+++++++|+. .+++|+|
T Consensus 1 M~~rILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~~G~~l~~~ir~~~~~~~~piI 80 (127)
T 2jba_A 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 99889999799999999999999879999998999999999971799999981889996289999999847877999099
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 9943797899999997699869976979899999999996036
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++|++++.....++.+.|+++|+.|||++++|..+|+++|++.
T Consensus 81 ~ls~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9989899999999998498587719999999999999998152
No 22
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.97 E-value=4.7e-29 Score=193.78 Aligned_cols=121 Identities=22% Similarity=0.399 Sum_probs=115.6
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 98-6699975998999999999998898999999979999999718--99899998365599979999999985899859
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~--~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+ .||||||||+.+|+.++..|+..||+|.+|.||.+|++.+.+. +||++++|+.||++||+++++++++.+|.+||
T Consensus 1 M~m~rILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~~~dlvilD~~mp~~~G~~l~~~~~~~~~~~pv 80 (143)
T 3jte_A 1 MSLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 99988999969999999999999987999999788999999998459997399974777777889999999987899969
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 99943797899999997699869976979899999999996036
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++||+++.+...++++.|+++||.|||++++|..+|+++++.+
T Consensus 81 I~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 124 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99988899999999998699899828999999999999999999
No 23
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.97 E-value=3e-29 Score=194.95 Aligned_cols=122 Identities=21% Similarity=0.364 Sum_probs=115.9
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCE
Q ss_conf 98-6699975998999999999998898999999979999999718998999983655999799999999858--99859
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKV 77 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pi 77 (122)
|+ +||||||||+.+|..++..|+.+||+|.+|.||++|++.+++++||+||+|+.||++||++++++||+.. +++||
T Consensus 1 m~~~rILIVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~ipv 80 (138)
T 3c3m_A 1 MSLYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 99898999979999999999999987999999899999999975389989997067899988999999984865589987
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 999437978999999976998699769798999999999960369
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~ 122 (122)
|++|+.++.....++.+.|+++|+.|||++++|..+++++|++++
T Consensus 81 I~ls~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~l~~~l~r~~ 125 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 998637989999999867998899898999999999999999652
No 24
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.97 E-value=2.9e-29 Score=195.06 Aligned_cols=118 Identities=20% Similarity=0.320 Sum_probs=114.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
||||||||+.++..++.+|+.+||+|.+|.||.+|++++.+++||+||+|+.||+|||+++++++|+..|++|+|++||+
T Consensus 16 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvi~D~~mP~~~G~ell~~ir~~~~~~piI~lT~~ 95 (153)
T 3hv2_A 16 EILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 79999799999999999999879999998999999999872799999983678899889999999986899968999799
Q ss_pred CCHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 97899999997699-869976979899999999996036
Q gi|254780312|r 84 AAVALNPDSNAPKN-AKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 84 ~~~~~~~~~~~~g~-~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++.+...++.+.|+ ++||.|||+.++|..+|+++++.+
T Consensus 96 ~~~~~~~~a~~~Gav~~yl~KP~~~~~L~~~i~~~l~~~ 134 (153)
T 3hv2_A 96 PDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQ 134 (153)
T ss_dssp CCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999999999977998877889899999999999999999
No 25
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.97 E-value=2.5e-29 Score=195.39 Aligned_cols=121 Identities=24% Similarity=0.302 Sum_probs=115.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+++||||||||+.+|..++..|+.+||+|.+|+||++|++.+++++||+|++|+.||++||+++++++|+..+++|+|++
T Consensus 6 ~g~kILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~~Al~~l~~~~~dlvi~D~~mP~~dG~~~~~~ir~~~~~~piI~l 85 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEHHHHCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 99989999698999999999999889999998999999999852898874574217999899999999960989989999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979-899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~-~~~L~~~i~~~l~~~ 121 (122)
|++++.+...++.+.|+++|+.|||+ .++|.+.++++|..+
T Consensus 86 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~~L~~~i~~~L~~~ 127 (130)
T 3eod_A 86 SATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp ECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 899999999999986998899799997999999999985176
No 26
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.96 E-value=3.2e-29 Score=194.81 Aligned_cols=120 Identities=28% Similarity=0.446 Sum_probs=115.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858--9985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~ 79 (122)
+|||||||||+.+|..+...|+.+||+|.+|.||.+|++.+++++||+|++|+.||++||++++++||+.. +++|+|+
T Consensus 1 ~kriLiVdD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~pdlillD~~mp~~~G~el~~~ir~~~~~~~iPii~ 80 (124)
T 1mb3_A 1 TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA 80 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 97599995899999999999998799999989999999999837999999789999984799999998288779996899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 943797899999997699869976979899999999996036
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+|+++..+...++.+.|+++|+.|||++++|+++++++|+++
T Consensus 81 ls~~~~~~~~~~~~~~G~~~yl~KP~~~~~L~~~l~~~l~r~ 122 (124)
T 1mb3_A 81 VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 989899899999997799899989899999999999998339
No 27
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=99.96 E-value=5.4e-29 Score=193.42 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=115.8
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC-----CCHHHHHHHHHHHCCC
Q ss_conf 986-6999759989999999999988989999999799999997189989999836559-----9979999999985899
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-----MDGIELARRATELDPD 74 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~-----~dG~el~~~ir~~~~~ 74 (122)
|+. ||||||||+.+|..++..|+.+||+|.+|.||++|++.+++++||+||+|++||+ +||+++++++|+..|+
T Consensus 1 Ms~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillDl~mP~~~~~G~dGl~~l~~ir~~~~~ 80 (140)
T 2qr3_A 1 MSLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99998999979999999999999978999999899999999997279999999168877776775199999999986899
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 8599994379789999999769986997697989999999999603
Q gi|254780312|r 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 75 ~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|+|++|++++.+...++.+.|+++||.|||+.++|+.+|.++++.
T Consensus 81 ipvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~al~~ 126 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8289997899999999999869978997989999999999999997
No 28
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis}
Probab=99.96 E-value=8.1e-29 Score=192.38 Aligned_cols=119 Identities=21% Similarity=0.426 Sum_probs=114.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858998599994
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
++||||||||+.+|..++..|+..||+|.+|+||++|++++.+++||+||+|+.||+++|+++++++|+..|++|+|++|
T Consensus 7 ~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~l~~~~~dliilD~~mp~~~G~~~l~~ir~~~~~~piI~lt 86 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVIS 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 99899997999999999999998799899989999999998628998899668888888189999999858899789998
Q ss_pred CCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 3797899999997699-86997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKN-AKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~-~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++++.+...++++.|+ ++||.|||++++|..+|+++++.
T Consensus 87 ~~~~~~~~~~ai~~Gavd~yL~KP~~~~~L~~~i~~al~~ 126 (154)
T 2rjn_A 87 GYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp CGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 6699999999997699987788979999999999999999
No 29
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.96 E-value=3.8e-29 Score=194.31 Aligned_cols=119 Identities=24% Similarity=0.325 Sum_probs=112.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEE
Q ss_conf 86699975998999999999998898999999979999999718-99899998365599979999999985--8998599
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIELARRATEL--DPDLKVM 78 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii 78 (122)
+.||||||||+.+|.+++.+|+..||+|..|.||.+|++.+.++ +||+||+|+.||+|||++++++||+. .+++|||
T Consensus 124 ~~~VLvVDD~~~~~~~i~~~L~~~g~~v~~a~~g~eal~~l~~~~~~DlIllD~~MP~~dG~e~~~~iR~~~~~~~iPII 203 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAII 203 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 62578753888999999999983466245324056899998448996599964777675489999999837889999499
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 994379789999999769986997697989999999999603
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++|+.+..+...++.+.|+++||.|||++++|..+|++.|+.
T Consensus 204 ~lTa~~~~~~~~~~~~~Ga~d~l~KP~~~~eL~~~i~~~L~~ 245 (259)
T 3luf_A 204 GISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp EEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 998999989999999879999998989999999999999999
No 30
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684}
Probab=99.96 E-value=3.9e-29 Score=194.25 Aligned_cols=118 Identities=19% Similarity=0.337 Sum_probs=113.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979999999985--899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~~ 80 (122)
.||||||||+.+|..++..|+.+||+|.+|.||.+|++.+.+.+||+||+|+.||++||++++++||+. .+++|||++
T Consensus 9 ~rILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~~~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPiI~l 88 (147)
T 2zay_A 9 WRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIAL 88 (147)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 88999979999999999999987999999899999999998379999998599999975189999984855689718997
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++++.+...++.+.|+++|+.|||++++|..+|+++|++
T Consensus 89 S~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~ 128 (147)
T 2zay_A 89 SGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 2689999999999879988997999999999999999998
No 31
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.96 E-value=4.6e-29 Score=193.87 Aligned_cols=119 Identities=23% Similarity=0.386 Sum_probs=115.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
|||||||||+.+|..++..|+..||+|..|.||.+|++.+.+..||+||+|+.||++||+++++++|+..|++|||++|+
T Consensus 1 kRILIVDDd~~i~~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~~~DlvllDl~mP~~dGlell~~ir~~~p~~pVIvlT~ 80 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITG 80 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 96999928999999999999977998999799999999987179999999798999999999999996399875445567
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 797899999997699869976979899999999996036
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+++.+...++++.|+.+|+.|||+.++|..+|+++++..
T Consensus 81 ~~~~~~av~Al~~GA~Dyl~KP~~~~~L~~~I~~ale~~ 119 (368)
T 3dzd_A 81 HGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp SSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 799999999997487632058853799999999999999
No 32
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes}
Probab=99.96 E-value=2.7e-29 Score=195.19 Aligned_cols=119 Identities=25% Similarity=0.331 Sum_probs=114.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
-||||||||+.+|+.++.+|+.+||+|..|+||++|++.+.+.+||+||+|+.||++||+++++++|+..+++|||++|+
T Consensus 8 mkVLiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~DlvilD~~mP~~dG~el~~~ir~~~~~~piI~lT~ 87 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 78999958899999999999967999999899999999987479989997378999989999999995098995899989
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 797899999997699869976979899999999996036
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+++.+...++.+.|+++|+.||+++++|..+|+++...|
T Consensus 88 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 126 (137)
T 3hdg_A 88 FSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 899999999998699899979899999999999999899
No 33
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.96 E-value=1e-28 Score=191.81 Aligned_cols=118 Identities=19% Similarity=0.359 Sum_probs=112.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6699975998999999999998898999-999979999999718--9989999836559997999999998589985999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREE--PFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~--~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
.||||||||+.+|+.++.+|+.+||+|. +|.||++|++.++++ +||+|++|+.||++||++++++||+..+++|||+
T Consensus 37 ~~ILiVDD~~~~~~~l~~~L~~~g~~vv~~a~~g~eAl~~~~~~~p~~dlvilD~~mP~~dG~e~~~~ir~~~~~~piI~ 116 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIM 116 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 88999969999999999999987998999989999999999841989189998568999978999999997199997687
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|++++.+...++.+.|+++|+.|||++++|+.+|+++|.+
T Consensus 117 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r 157 (157)
T 3hzh_A 117 ISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFVK 157 (157)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTCC
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 63279999999999859988997989999999999999678
No 34
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.96 E-value=3.5e-29 Score=194.54 Aligned_cols=115 Identities=27% Similarity=0.539 Sum_probs=108.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
+||||||||+.+|+.++..|+.+||+|.+|.||++|++.+++++||+|++|++||++||+++++++|+..+++|+|++||
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvilD~~mP~~~G~e~~~~ir~~~~~~pii~lt~ 81 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 88999929999999999999987999999899999999998479998998368899999999999984399897999989
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 7978999999976998699769798999999999960
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+++.. .++...|+++|+.|||++++|.++++++|+
T Consensus 82 ~~~~~--~~~~~~Ga~~~l~KP~~~~~L~~~v~~~L~ 116 (116)
T 3a10_A 82 YSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLLS 116 (116)
T ss_dssp CGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHTC
T ss_pred CCCHH--HHHHHCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf 78999--999826998899898999999999999749
No 35
>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.96 E-value=2.9e-29 Score=195.09 Aligned_cols=119 Identities=25% Similarity=0.460 Sum_probs=113.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986699975998999999999998898---99999997999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~---~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+-|||||||++.+|+.+...|+.+|| .|.+|.||.+|++.+.+++||+||+|+.||++||+++++++|+.+|++||
T Consensus 1 M~irILiVDD~~~~r~~l~~~L~~~~~~~~~v~~a~~g~eal~~~~~~~pdlillDi~MP~~dG~el~~~i~~~~p~~~i 80 (141)
T 3cu5_A 1 MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp -CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 99749999099999999999999659984599897999999999986799989973689999999999999975879939
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999437978999999976998699769798999999999960
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
|++||+++.+...++.+.|+.+|+.|||++++|..+++++++
T Consensus 81 I~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 122 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999787999999999986999899798999999999999999
No 36
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=99.96 E-value=2.5e-28 Score=189.44 Aligned_cols=119 Identities=20% Similarity=0.328 Sum_probs=108.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC-CCCCEEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858-99859999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD-PDLKVMFI 80 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~-~~~pii~~ 80 (122)
+|||||||||+.+|..++.+|+.+||+|.+|.||.+|++.+.+.+||+|++|+.||++||++++++||+.. +..|+|++
T Consensus 6 ~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~pdlillD~~mP~~dG~el~~~ir~~~~~~~~~Iil 85 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 98699997999999999999998899999988999999999747999999968987888999999998458889891899
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++..+.....++.+.|+++|+.|||++++|.++|+++++.
T Consensus 86 ~s~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~ll~~ 125 (132)
T 3lte_A 86 VSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp ECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 9559999999999879989998989999999999999957
No 37
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=99.96 E-value=4e-28 Score=188.21 Aligned_cols=119 Identities=21% Similarity=0.269 Sum_probs=113.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEE
Q ss_conf 6699975998999999999998--89899999997999999971899899998365599979999999985--8998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~--~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii 78 (122)
.||||||||+.+|+.++.+|+. .||+|..|.||.+|++++++.+||+||+|+.||++||++++++||+. .+++|||
T Consensus 9 ~~ILiVDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eAl~~~~~~~pDlillD~~mP~~dG~el~~~ir~~~~~~~ipvI 88 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVI 88 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 99999919999999999999827898089998999999999972799999980888999869999999847888998499
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 9943797899999997699869976979899999999996036
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++|++++.+...++.+.|+++|+.|||+.++|..+|+++++.+
T Consensus 89 ~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 131 (143)
T 3cnb_A 89 AMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9984899899999997699899989899999999999999715
No 38
>3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440}
Probab=99.96 E-value=2.5e-28 Score=189.44 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=111.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEEEE
Q ss_conf 669997599899999999999889899999997999999971-899899998365599979999999985-899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii~~ 80 (122)
.||||||||+.+|..++.+|+.+||+|.+|.||++|+..+.+ .+||+||+|+.||++||++++++||+. .+++|||++
T Consensus 8 ~~ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~~~~a~~~l~~~~~~dlii~D~~mP~~~G~el~~~ir~~~~~~~piI~l 87 (136)
T 3hdv_A 8 PLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVV 87 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88999979999999999999987999999899999999997579998899879899998999999999557999919999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
||+++.+...++.+.|+++|+.|||++++|..+|+++|+..
T Consensus 88 T~~~~~~~~~~a~~~G~~d~l~KP~~~~~L~~~v~~~L~~~ 128 (136)
T 3hdv_A 88 SGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 88899999999998699989989899999999999999981
No 39
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.96 E-value=1.6e-28 Score=190.57 Aligned_cols=118 Identities=21% Similarity=0.323 Sum_probs=111.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
-||||||||+.+|..++..|+. ||+|..|+||++|++.+++++||+|++|+.||++||+++++++|+..|++|+|++||
T Consensus 2 P~ILiVDDd~~~~~~l~~~L~~-g~~v~~a~~~~~al~~~~~~~~dlvl~D~~mP~~~G~ell~~ir~~~~~~~vI~lt~ 80 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALED-DFDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITG 80 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTT-TSCEEEESSHHHHHHHHHHSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9999994999999999999987-999999899999999997289999998556789855999999998189995899989
Q ss_pred CCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 79789999999-7699869976979899999999996036
Q gi|254780312|r 83 FAAVALNPDSN-APKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 ~~~~~~~~~~~-~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+++.+...++. +.|+++||.|||++++|..+++++++.+
T Consensus 81 ~~~~~~~~~a~~~~Ga~dyl~KP~~~~~L~~~v~~~~~~~ 120 (139)
T 2jk1_A 81 YTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 7998999999998599808989999999999999999999
No 40
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.96 E-value=3.6e-28 Score=188.51 Aligned_cols=120 Identities=28% Similarity=0.404 Sum_probs=115.2
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986-6999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++ ||||||||+.+|..++..|+.+||+|..|+||++|++++++++||+||+|+.||++||+++++++|+. +.+|+|+
T Consensus 1 M~~p~ILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~lP~~~g~e~~~~~~~~-~~~pii~ 79 (123)
T 1xhf_A 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ-ANVALMF 79 (123)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCCCEEE
T ss_conf 999999999699999999999999879999998999999999970899999996899984499999999856-9997899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 943797899999997699869976979899999999996036
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+|++++.+...++.+.|+++|+.|||++++|..+|+++|++.
T Consensus 80 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~v~~~l~R~ 121 (123)
T 1xhf_A 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 993599999999998498888869899999999999998772
No 41
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.96 E-value=1.4e-28 Score=190.97 Aligned_cols=119 Identities=24% Similarity=0.421 Sum_probs=109.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 986699975998999999999998898999999979999999718998999983655999799999999858--998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii 78 (122)
|+.||||||||+.+|+.++..|+ .||+|.+|.||.+|++.+++.+||+||+|+.||++||++++++||+.. +++|||
T Consensus 3 mkprILiVDD~~~~r~~l~~~L~-~~~~v~~a~~g~eal~~l~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPiI 81 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVI 81 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 99979999498999999999997-89989998999999999984799999975999999999999999828888998789
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 9943797899999997699869976979899999999996036
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++|++++.. ...+.+.|+++||.|||++++|.++|+++|+++
T Consensus 82 ~lT~~~~~~-~~~a~~~ga~~yl~KP~~~~~L~~~i~~~l~r~ 123 (133)
T 3nhm_A 82 FVSGYAPRT-EGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCHHH-HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 970788499-999987799789989999999999999999889
No 42
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.96 E-value=8.4e-29 Score=192.29 Aligned_cols=119 Identities=24% Similarity=0.412 Sum_probs=110.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+.+|||||||+.+|..++.+|+..||+|..|+||.+|++.++++.||+||+|+.||++||+|++++||+..+++|+|++
T Consensus 4 ~~atiLiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvl~D~~mP~~~G~e~~~~i~~~~~~~pvi~l 83 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVL 83 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 88659999799999999999999789999998999999999863899999998978999899999999853999838999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHH-HHHHHHHH
Q ss_conf 4379789999999769986997697989999-99999960
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLV-NEVNRLLT 119 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~-~~i~~~l~ 119 (122)
|++++.+...++.+.|+++|+.||+...++. .+|++.++
T Consensus 84 t~~~~~~~~~~~l~~Ga~dyl~KP~~~~~~~~~~i~~~l~ 123 (394)
T 3eq2_A 84 SGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALD 123 (394)
T ss_dssp ---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8058789999999769720897799867999999998765
No 43
>3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.96 E-value=3.6e-29 Score=194.47 Aligned_cols=118 Identities=21% Similarity=0.396 Sum_probs=112.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979999999985--899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~~ 80 (122)
.||||||||+.+|..++..|+.+||+|.+|.||.+|++.+++++||+||+|+.||++||++++++||+. .+++|||++
T Consensus 8 ~~VLiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~~ipiI~l 87 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVML 87 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 95999979899999999999987999999899999999997179999998389999868999999985755689959999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++++.+...++.+.|+++|+.|||++++|++++++++..
T Consensus 88 T~~~~~~~~~~a~~~G~~dyl~KP~~~~~Ll~~v~~~l~~ 127 (142)
T 3cg4_A 88 TAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp ECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 7889999999999869988998989999999999999998
No 44
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.96 E-value=3.6e-28 Score=188.48 Aligned_cols=119 Identities=18% Similarity=0.331 Sum_probs=110.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHC--CCCCE
Q ss_conf 986699975998999999999998898999999979999999718998999983655-999799999999858--99859
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELD--PDLKV 77 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~--~~~pi 77 (122)
|++||||||||+.++..++..|+.+||+|.+|.||.+|++.+++++||+|++|+.|| ++||+++++++|+.. +++||
T Consensus 4 M~kkILvVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~pdliilD~~lp~~~~G~~l~~~ir~~~~~~~iPi 83 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 58859999899999999999999879999998999999999984799999997577768889999999983888899838
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9994379789999999769986997697989999999999603
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++|+.+.. ...++.+.|+++|+.|||++++|..+|+++|++
T Consensus 84 i~lt~~~~~-~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~L~~ 125 (127)
T 2gkg_A 84 VIIGNPDGF-AQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEEECGGGH-HHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEEECCCHH-HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 999689859-999999869989998989999999999998779
No 45
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A*
Probab=99.96 E-value=6.6e-28 Score=186.90 Aligned_cols=117 Identities=26% Similarity=0.494 Sum_probs=113.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
||||||||+.++..++..|+..||+|..|.||.+|++++++++||+||+|+.||++||+++++++|+.+|++|||++||+
T Consensus 2 rILiVDDd~~~~~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~~~DlVllDl~mP~~dGlell~~lr~~~p~~pVIvlTg~ 81 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGH 81 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEET
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 79999488999999999999779999998999999999861899889995999999999999999844999828995055
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9789999999769986997697989999999999603
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++.+...++.+.|+.+|+.|||+.++|..++++++..
T Consensus 82 ~~~~~a~~A~~~GA~dyl~KP~~~~~L~~~i~~a~~~ 118 (387)
T 1ny5_A 82 GTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118 (387)
T ss_dssp TCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4134354444147653125872025677788766778
No 46
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus}
Probab=99.96 E-value=7.4e-28 Score=186.62 Aligned_cols=120 Identities=22% Similarity=0.385 Sum_probs=113.8
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986-69997599899999999999889-8999-99997999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAG-YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G-~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+. |||||||++.+|+.++.+|+.+| |+|. +|.||.+|++++++.+||+|++|+.||++||++++++||+..|++|+
T Consensus 1 M~m~~ILIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~~~~~~v 80 (133)
T 3b2n_A 1 MSLTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 99999999929999999999999868996999998999999999985699999995778999889999999986899968
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9994379789999999769986997697989999999999603
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++|++++.....++.+.|+++|+.||+++++|.++|+++++.
T Consensus 81 I~lT~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~I~~v~~g 123 (133)
T 3b2n_A 81 IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 9996789999999999879978997999999999999999971
No 47
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ...
Probab=99.96 E-value=8.3e-28 Score=186.33 Aligned_cols=118 Identities=25% Similarity=0.417 Sum_probs=112.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEEE
Q ss_conf 699975998999999999998898-99999997999999971899899998365599979999999985--899859999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMFI 80 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~-~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~~ 80 (122)
||||||||+.+|+.++.+|+.+|| .|.+|.+|.+|++.+++++||+|++|+.||++||++++++||+. .+++|+|++
T Consensus 6 rILiVDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~a~~~~~~~~~dliilD~~mP~~dG~el~~~ir~~~~~~~~piI~l 85 (128)
T 1jbe_A 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMV 85 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999698999999999999879968999899999999976289999999699999998999999997567799938999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.+...++.+.|+++|+.|||++++|.+++++++++.
T Consensus 86 t~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l~r~ 126 (128)
T 1jbe_A 86 TAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 89899999999998799899989899999999999999874
No 48
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.96 E-value=7e-28 Score=186.76 Aligned_cols=121 Identities=21% Similarity=0.384 Sum_probs=112.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC-CE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCC-CCE
Q ss_conf 98669997599899999999999889-89-9999997999999971899899998365599979999999985899-859
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAG-YE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD-LKV 77 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G-~~-v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~-~pi 77 (122)
|+-||||||||+.+++.++..|+..| ++ |.+|.||++|++.+++++||++++|+.||++||++++++||+..+. +||
T Consensus 1 Ms~rvLivDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eal~~~~~~~pdlvllD~~mP~~dG~el~~~ir~~~~~~~~i 80 (130)
T 1dz3_A 1 MSIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 99639999799999999999998589937999989999999999855999999828999998899999998559999979
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 99943797899999997699869976979899999999996036
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+++|++++.+...++.+.|+++|+.|||++++|..+++++++..
T Consensus 81 i~~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99978999999999998699799979999999999999998237
No 49
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.96 E-value=1.7e-27 Score=184.47 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=110.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-----CCCCC
Q ss_conf 8669997599899999999999889899999997999999971899899998365599979999999985-----89985
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-----DPDLK 76 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-----~~~~p 76 (122)
.+||||||||+.+|..++.+|+.+||+|.+|+||.+|+++++ ++||+||+|+.||++||++++++||+. .+.+|
T Consensus 7 g~rILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~-~~~dlii~D~~mP~~dG~e~~~~ir~~~~~~~~~~~~ 85 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPL 85 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCE
T ss_conf 999999939899999999999987999999899999998624-5998999945689974899999999845012689886
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 999943797899999997699869976979899999999996036
Q gi|254780312|r 77 VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
||++||+.+.+...++.+.|+++||.|||++++|.++++++++.|
T Consensus 86 ii~~Ta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~r 130 (136)
T 1dcf_A 86 LVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp EEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCH
T ss_conf 999968999999999998699989989899999999999996003
No 50
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.96 E-value=2e-27 Score=184.03 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=111.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHH-----CCCCEEEEEEECCCCCHHHHHHHHHHH-CCC
Q ss_conf 866999759989999999999988989-9999997999999971-----899899998365599979999999985-899
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVRE-----EPFSLLLTDIVMPEMDGIELARRATEL-DPD 74 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~-v~~a~~g~~al~~~~~-----~~~dlii~D~~mP~~dG~el~~~ir~~-~~~ 74 (122)
+-||||||||+.+|..++.+|+.+||+ |..|.||++|++.+++ ++||+|++|+.||+|||+++++.+|+. .+.
T Consensus 2 sirVLiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eal~~l~~~~~~~~~~dlil~D~~MP~~dG~~~~~~ir~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 98899996989999999999998699489998999999999987421368988899738889988999999998648999
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 8599994379789999999769986997697989999999999603
Q gi|254780312|r 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 75 ~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|+|++|++++.+...++.+.|+++||.|||++++|.+.++++++.
T Consensus 82 ~piI~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9289997469999999999869988997989999999999999999
No 51
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-27 Score=185.14 Aligned_cols=118 Identities=21% Similarity=0.366 Sum_probs=111.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC----CCCCEE
Q ss_conf 6699975998999999999998898999999979999999718998999983655999799999999858----998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD----PDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~----~~~pii 78 (122)
-||||||||+.+|..+..+|+.+||+|.+|.+|++|++.+++++||+||+|+.||++||++++++||+.. ..+|||
T Consensus 15 lrILiVDD~~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~~G~el~~~ir~~~~~~~~~~pii 94 (143)
T 3m6m_D 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVV 94 (143)
T ss_dssp CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 97999958899999999999987999999899999999975289999998388899988999999986284335899399
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 994379789999999769986997697989999999999603
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++|++++.+...++.+.|+++|+.|||+.++|++++.++...
T Consensus 95 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~l~~~ 136 (143)
T 3m6m_D 95 VLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 997889999999999869988997989999999999999982
No 52
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.95 E-value=2.9e-28 Score=189.08 Aligned_cols=119 Identities=26% Similarity=0.311 Sum_probs=111.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 86699975998999999999998898999999979999999718-998999983655-9997999999998589985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~ 79 (122)
++||||||||+.+|..++.+|+.+||+|.+|.||++|++.+.++ .||+|++|+.|| +|||+++++++|+ .+++|||+
T Consensus 5 ~~rILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~dlillD~~mp~g~dG~e~~~~ir~-~~~~PvI~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQ-ISELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHH-HCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH-CCCCCEEE
T ss_conf 99999995989999999999998799999989899999999846999899972665335789999999985-69998999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 943797899999997699869976979899999999996036
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+|++++.+...++.+.|+++|+.|||++++|+.+|+++|+++
T Consensus 84 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 125 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLY 125 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 989999999999998799989989899999999999999998
No 53
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.95 E-value=2.4e-27 Score=183.61 Aligned_cols=120 Identities=26% Similarity=0.469 Sum_probs=112.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 66999759989999999999988989-9999997999999971-8998999983655999799999999858--998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELD--PDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii 78 (122)
.||||||||+.+|..++..|+.+||+ |.+|.||.+|++.+.+ .+||+|++|+.||++||++++++||+.. +++|||
T Consensus 6 lrILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eal~~l~~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~~~pii 85 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPII 85 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 89999928899999999999986996999989999999999737999899622158888879999999837567999399
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 99437978999999976998699769798999999999960369
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~ 122 (122)
++|++++.+...++.+.|+++|+.|||++++|..+++++|+.++
T Consensus 86 ~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~~L~~~d 129 (129)
T 3h1g_A 86 MITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND 129 (129)
T ss_dssp EEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCCC-
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 99767999999999986998999898999999999999975799
No 54
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.95 E-value=7.5e-28 Score=186.57 Aligned_cols=119 Identities=26% Similarity=0.426 Sum_probs=109.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979999999985--899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~~ 80 (122)
.||||||||+.+|+.++.+|+.+||+|..|.||++|++.+++++||+||+|+.||++||++++++||+. .+++|||++
T Consensus 7 ~rILiVDD~~~~~~~l~~~L~~~G~~v~~a~~~~eAl~~l~~~~~dlvilD~~mP~~dG~~l~~~ir~~~~~~~~pii~l 86 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVV 86 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 77999969999999999999987999999899999999997189989985366899978999999984725699978999
Q ss_pred ECCCCHH-HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 4379789-9999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~-~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|+++... ...++.+.|+++||.|||++++|+.+|+++++..
T Consensus 87 t~~~~~~~~~~~a~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 128 (140)
T 3grc_A 87 SANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp CTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 667875899999997799889989899999999999998607
No 55
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, protein structure initiative; 2.40A {Rhodospirillum rubrum atcc 11170}
Probab=99.95 E-value=3.3e-27 Score=182.75 Aligned_cols=118 Identities=22% Similarity=0.348 Sum_probs=109.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHH---------HCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 986699975998999999999998898--9999999799999997---------18998999983655999799999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVR---------EEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~--~v~~a~~g~~al~~~~---------~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
|+.+|||||||+.+++.++..|+.+|| +|.+|.||.+|++++. +.+||+||+|++||++||++++++||
T Consensus 3 ~~~~ILiVDDd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~dlIilD~~mP~~dG~el~~~ir 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 98659999799999999999999779963899978889999998432045566506999899868999998899999998
Q ss_pred HH--CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 85--89985999943797899999997699869976979899999999996
Q gi|254780312|r 70 EL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 70 ~~--~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
+. ...+|||++|++++.+...++.+.|+++|+.|||+.++|..+++++.
T Consensus 83 ~~~~~~~iPvI~lTa~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~i~~l~ 133 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 487779995899977699999999998699899979899999999999999
No 56
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT}
Probab=99.95 E-value=1.2e-27 Score=185.28 Aligned_cols=120 Identities=19% Similarity=0.324 Sum_probs=109.9
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCE
Q ss_conf 98-669997599899999999999889899999997999999971899899998365599979999999985--899859
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKV 77 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pi 77 (122)
|+ +||||||||+.+|+.++.+|+.+||+|..|.||++|++.+++++||+|++|+.||++||++++++||+. .+.+|+
T Consensus 1 ms~~~vLiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~dlillD~~mP~~~G~el~~~lr~~~~~~~~pi 80 (127)
T 3i42_A 1 MSLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 99888999957899999999999987999999899999999998089999986278999845999999984767899949
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 99943797899999997699869976979899999999996036
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++|+++..+....+.. |+++||.|||++++|...++++.+.+
T Consensus 81 i~lt~~~~~~~~~~~~~-g~~~~L~KP~~~~~L~~~l~~l~G~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDLGKEACE-LFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTCCHHHHH-HCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCCCHHHHHHHHH-CCCEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 99978887999999971-78789979899999999999804888
No 57
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.95 E-value=8.5e-28 Score=186.26 Aligned_cols=121 Identities=20% Similarity=0.299 Sum_probs=114.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHC-CCCEEEEEEECC-CCCHHHHHHHHHHH--CCCC
Q ss_conf 98669997599899999999999889-8999999979999999718-998999983655-99979999999985--8998
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGIELARRATEL--DPDL 75 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G-~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP-~~dG~el~~~ir~~--~~~~ 75 (122)
|+++||||||++.+|+.++.+|+.+| |+|.+|+||++|++.+++. +||+||+|+.|| ++||+++++++|+. .+++
T Consensus 3 ~~~~ILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~eal~~l~~~~~~dlii~D~~mP~~~~g~~l~~~ir~~~~~~~~ 82 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 99979999499999999999998679908999899999999997389985999868999999888999987644246899
Q ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 5999943797899999997699869976979899999999996036
Q gi|254780312|r 76 KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 76 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|||++||+++.+...++.+.|+++|+.|||++++|..+|+++|+++
T Consensus 83 piI~lT~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~i~~~L~~~ 128 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 8899827999999999998699899989899999999999999988
No 58
>3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396}
Probab=99.95 E-value=3.3e-27 Score=182.72 Aligned_cols=119 Identities=18% Similarity=0.334 Sum_probs=110.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCE
Q ss_conf 8669997599899999999999889--8999999979999999718998999983655999799999999858--99859
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKV 77 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pi 77 (122)
++||||||||+.++..++.+|+.+| |++..|+||++|++.+++.+||+|++|+.||++||++++++||+.. +.+||
T Consensus 5 ~krILlVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~~iPi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 99899995899999999999996899829999899999999997179999998699999999999999983787899918
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHHHHC
Q ss_conf 99943797899999997699869976979-89999999999603
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLLTI 120 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~-~~~L~~~i~~~l~~ 120 (122)
|++|+.++.+...++.+.|+++|+.||++ .++|..+++.++++
T Consensus 85 I~lS~~~~~~~~~~a~~~Ga~~~l~KP~~~~~eL~~~i~~~l~~ 128 (144)
T 3kht_A 85 VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99988899999999998699999969999999999999999998
No 59
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides}
Probab=99.95 E-value=4.1e-28 Score=188.13 Aligned_cols=118 Identities=20% Similarity=0.337 Sum_probs=108.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEE
Q ss_conf 986699975998999999999998898999-999979999999718998999983655-999799999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii 78 (122)
+..||||||||+.+|..+..+|+.+||+|. .|+||.+|++++.+++||+||+|++|| +|||++++++||+. +++|||
T Consensus 159 ~~~~ILiVdD~~~~~~~l~~~L~~~g~~v~~~a~~~~~a~~~~~~~~~Dlil~Di~mp~~mdG~~~~~~ir~~-~~~piI 237 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGR-MDVPVI 237 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHH-TTCCEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC-CCCCEE
T ss_conf 5632999888799999999999976997488613289999997517998899817887898899999999866-998389
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 9943797899999997699869976979899999999996036
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++|++++. ..++.+.|+++|+.|||++++|..+|+++|..+
T Consensus 238 ~lTa~~~~--~~~~~~~g~~~yl~KP~~~~~L~~~i~~aL~~~ 278 (286)
T 3n0r_A 238 FITAFPER--LLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEESCGGG--GCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEECCHHH--HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99568889--999998699989989899999999999999854
No 60
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.95 E-value=3.7e-27 Score=182.43 Aligned_cols=119 Identities=19% Similarity=0.303 Sum_probs=110.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHHC----------CCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 86699975998999999999998898--999999979999999718----------998999983655999799999999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVREE----------PFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~--~v~~a~~g~~al~~~~~~----------~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+++|||||||+.+|..++..|+.+|| +|.+|.||.+|++++++. .||+|++|++||++||++++++||
T Consensus 6 ~~~ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlvllD~~mP~~dG~el~~~ir 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 98099998999999999999998699727999899999999998501111112268999899808899998589999998
Q ss_pred HHC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 858--998599994379789999999769986997697989999999999603
Q gi|254780312|r 70 ELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 70 ~~~--~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+.. +++|||++|++.+.+...++.+.|+++|+.||++.++|.++++++++.
T Consensus 86 ~~~~~~~iPvI~lT~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 138 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 58666999589997899999999999879979997989999999999999999
No 61
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.95 E-value=8.7e-27 Score=180.20 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=109.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHH-------CCCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 8669997599899999999999889--899999997999999971-------8998999983655999799999999858
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVRE-------EPFSLLLTDIVMPEMDGIELARRATELD 72 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~-------~~~dlii~D~~mP~~dG~el~~~ir~~~ 72 (122)
.|||||||||+.++..++..|+..| |+|.+|.||++|++.+++ ..||+|++|++||++||++++++||+..
T Consensus 2 ~krILiVdDd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdliilD~~mP~~dG~el~~~ir~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 98099997999999999999996799818999899999999998624544047996899988999985599999998386
Q ss_pred --CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf --99859999437978999999976998699769798999999999960
Q gi|254780312|r 73 --PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 73 --~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
.++|||++|++++.....++.+.|+++|+.||+++++|..+++++++
T Consensus 82 ~~~~iPvi~ls~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~i~~ 130 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 6589989999578999999999987998999798999999999999999
No 62
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.95 E-value=1.2e-26 Score=179.40 Aligned_cols=121 Identities=21% Similarity=0.363 Sum_probs=113.5
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 98-66999759989999999999988-98999-99997999999971899899998365599979999999985899859
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+ .|||||||++.+|..++.+|+.. ||.+. .|.||.+|++++++.+||+||+|++||++||++++++||+..|.+||
T Consensus 3 ms~~RVLIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~~~~~~i 82 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 88877999929999999999999858991899998999999999754699689996457998789999999985899968
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 99943797899999997699869976979899999999996036
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++|++.+.....++.+.|+++|+.||+++++|.++|+++++.+
T Consensus 83 ivlt~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~ 126 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99981489999999998699838968999999999999998499
No 63
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.95 E-value=2.7e-27 Score=183.28 Aligned_cols=117 Identities=23% Similarity=0.436 Sum_probs=111.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEEE
Q ss_conf 6999759989999999999988989-9999997999999971899899998365599979999999985--899859999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMFI 80 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~-v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~~ 80 (122)
||||||||+.+|..++..|+.+||. |.+++||++|++++++++||+|++|+.||++||++++++||+. .+.+|+|++
T Consensus 8 rILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~~~~~~~dlii~D~~mP~~dG~~l~~~ir~~~~~~~~pii~l 87 (129)
T 1p6q_A 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIIL 87 (129)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 89999598999999999999879929999899999999997189989998458899987999999983856689829999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++++.+...++.+.|+++|+.|||+.++|.++++++++.
T Consensus 88 s~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~vl~~ 127 (129)
T 1p6q_A 88 TAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8049999999999879988998989999999999999985
No 64
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.95 E-value=2.6e-27 Score=183.31 Aligned_cols=120 Identities=26% Similarity=0.462 Sum_probs=115.5
Q ss_pred CCC--EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 986--699975998999999999998898999999979999999718998999983655999799999999858998599
Q gi|254780312|r 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~--rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii 78 (122)
|+. |||||||++.+|..++.+|+..||.|..|.||.+|++.+++++||+||+|+.||++||+++++++++..|++|+|
T Consensus 1 Mt~~p~ILIVDD~~~~r~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~pDlvllD~~mp~~~G~~~l~~i~~~~~~~~iI 80 (208)
T 1yio_A 1 MTAKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIV 80 (208)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 98899799994999999999999997799899979999999986046999899857889976579999988605665179
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 994379789999999769986997697989999999999603
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++|++++.+...++.+.|+.+|+.||++..+|..+|++++..
T Consensus 81 ~lt~~~~~~~~~~al~~Ga~~yl~Kp~~~~el~~~i~~~l~~ 122 (208)
T 1yio_A 81 FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 872579999999999779998953899999999999999974
No 65
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.95 E-value=2.1e-26 Score=177.88 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=108.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHHC-------CCCEEEEEEECCCCCHHHHHHHHHHHC-
Q ss_conf 6699975998999999999998898--999999979999999718-------998999983655999799999999858-
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVREE-------PFSLLLTDIVMPEMDGIELARRATELD- 72 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~--~v~~a~~g~~al~~~~~~-------~~dlii~D~~mP~~dG~el~~~ir~~~- 72 (122)
++|||||||+..|+.++..|+..|+ +|.++.||++|++++++. +||+||+|++||++||++++++||+..
T Consensus 9 ~~ILiVdD~~~~~~~l~~~L~~~g~~~~v~~~~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~~G~el~~~ir~~~~ 88 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPD 88 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 98999979999999999999976998479998999999999985002212689888998489999864999999985804
Q ss_pred -CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf -99859999437978999999976998699769798999999999960
Q gi|254780312|r 73 -PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 73 -~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
..+|||++|++++.+...++.+.|+++|+.||++.++|..+|+++++
T Consensus 89 ~~~iPvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~ 136 (149)
T 1i3c_A 89 LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 479988999568999999999987998999798999999999999999
No 66
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=99.95 E-value=1.5e-26 Score=178.76 Aligned_cols=120 Identities=28% Similarity=0.506 Sum_probs=116.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+.||||||||+..++.+...|+..||.|..|.||++|++.+.+++||+||+|+.||++||+++++.+|+..+.+|||++
T Consensus 1 M~~rILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dliilD~~lp~~~g~~~~~~ir~~~~~~pii~l 80 (225)
T 1kgs_A 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLML 80 (225)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCEEEC
T ss_conf 99619999299999999999999879999998999999999972899899994677654310101221113456753202
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++.+.....++.+.|+++|+.|||++++|..+++..+..
T Consensus 81 s~~~~~~~~~~~l~~Gaddyl~KP~~~~eL~a~i~~~~~~ 120 (225)
T 1kgs_A 81 TALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp ESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHC
T ss_conf 3344167899999779985245899999999999999711
No 67
>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.95 E-value=1.1e-26 Score=179.51 Aligned_cols=118 Identities=25% Similarity=0.312 Sum_probs=112.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6699975998999999999998898999-9999799999997189989999836559-9979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE-MDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~-~dG~el~~~ir~~~~~~pii~~ 80 (122)
.||||||||+.+|..++..|+.+||+|. +|.||++|++++++++||++++|+.||+ +||+++++++|+ .+++|+|++
T Consensus 10 ~~ILvVDD~~~~~~~l~~~L~~~G~~v~~~a~~~~eal~~~~~~~~dlvi~D~~mp~~~dG~~l~~~lr~-~~~~piI~l 88 (140)
T 3cg0_A 10 PGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAA-GCNLPIIFI 88 (140)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHH-HSCCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 9899997999999999999998799899997899999999982799889997678767989999999985-799968999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.+...++.+.|+++||.|||++++|..+|+++|+.+
T Consensus 89 t~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 129 (140)
T 3cg0_A 89 TSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp ECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 66899999999998799989979899999999999999999
No 68
>3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12}
Probab=99.95 E-value=6.6e-27 Score=180.91 Aligned_cols=119 Identities=12% Similarity=0.159 Sum_probs=114.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6699975998999999999998898999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
=|||||||++.+|..++..|++.||++. .|.||.+|++.+++.+||++++|+.||++||+++++++|+..|++|||++|
T Consensus 2 i~vLIvDD~~~~r~~l~~~L~~~~~~vv~~a~~g~~al~~~~~~~pDlvilD~~mP~~~G~e~~~~lr~~~~~~~iivlS 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 39999969899999999999868998999989999999998726999999959999998999999999529998389996
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 3797899999997699869976979899999999996036
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++.+.....++.+.|+++|+.||+++++|.++|+++++.+
T Consensus 82 ~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~ 121 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 7899999999998799899979899999999999998799
No 69
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
Probab=99.95 E-value=4.5e-27 Score=181.89 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=110.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEE
Q ss_conf 6699975998999999999998-89899999997999999971899899998365599979999999985--89985999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMF 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~-~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~ 79 (122)
-|||||||++.++..++..|.. .||+|..|.||.+|++++.+.+||+||+|++||+|||++++++||+. .+++|||+
T Consensus 19 ~~ILiVDD~~~~~~~l~~~L~~~~g~~v~~a~~g~eal~~~~~~~pDlvllD~~mP~~dGlel~~~iR~~~~~~~~pii~ 98 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIV 98 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 67999959999999999998534883999989999999999844999999808889999999999997364557962999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|++++.+...++++.|+++|+.|||...+|..+++..+..
T Consensus 99 lt~~~d~~~~~~al~~Ga~Dfl~KP~~~~el~~~~~~~l~~ 139 (358)
T 3bre_A 99 LSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRS 139 (358)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 63540267888762256534631587637777777641011
No 70
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.95 E-value=4.1e-26 Score=176.18 Aligned_cols=116 Identities=13% Similarity=0.224 Sum_probs=110.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
=||||||||+.+++.++..|+..||+|.++.||++|++.+++++||+|+ ||++||+++++++|+..+.+|||++|+
T Consensus 19 mrILvVEDd~~~~~~l~~~L~~~G~~v~~a~~g~~al~~l~~~~~Dlvi----Lp~~~G~ell~~ir~~~~~~piiilT~ 94 (137)
T 2pln_A 19 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIKEKHSSIVVLVSSD 94 (137)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE----ECSTTHHHHHHHHHHHSTTSEEEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEE----EECCCCHHHHHHHHHCCCCCCEEEEEC
T ss_conf 8899995999999999999998899999989999999999728999999----827876379999996288997599964
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHHHHCCC
Q ss_conf 797899999997699869976979-8999999999960369
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLLTIKN 122 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~-~~~L~~~i~~~l~~~~ 122 (122)
+++.+...++++.|+++|+.|||. .++|..+|+.++++.+
T Consensus 95 ~~~~~~~~~al~~Gaddyl~KPf~~~~eL~aRI~allRR~~ 135 (137)
T 2pln_A 95 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWG 135 (137)
T ss_dssp SCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 89999999999869988997999998999999999966658
No 71
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.94 E-value=1.1e-29 Score=197.57 Aligned_cols=121 Identities=26% Similarity=0.442 Sum_probs=117.2
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986-6999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++ +|||||||+.+|..++..|+.+||+|.+|.||.+|++.+++++||+||+|+.||++||+++++++|+..+.+|+++
T Consensus 1 M~k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~~lp~~~G~el~~~l~~~~~~~pii~ 80 (124)
T 1dc7_A 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99898999959999999999999988999999899999999998389999987588999845999999998589991999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 943797899999997699869976979899999999996036
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+|++++.+...++.+.|+++|+.|||++++|..+++++|+++
T Consensus 81 ~t~~~~~~~~~~a~~~G~~dyl~KP~~~~~L~~~i~~~l~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 989899999999998699807839799999999999999984
No 72
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H}
Probab=99.94 E-value=2.3e-27 Score=183.63 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=107.4
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 98-66999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|+ +||||||||+.+|+.++.+|+.+||.|.++ ++.+|+..+.+++||+|++|+.||++||+++++++|+..+.+|+|+
T Consensus 1 m~~~rILIVDDd~~~~~~l~~~L~~~g~~v~a~-~~~eal~~l~~~~~dlillD~~mP~~dG~el~~~lr~~~~~~~iii 79 (135)
T 3eqz_A 1 MSLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAF-QHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHTTTCSCEEEE-SCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEC-CHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 988999999299999999999999789989991-7899999986589999998599999989999999995299997999
Q ss_pred EECCCCHH-----HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 94379789-----9999997699869976979899999999996036
Q gi|254780312|r 80 ITGFAAVA-----LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~-----~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+||+++.. ...++...|+.+||.|||++++|..+++++++++
T Consensus 80 ls~~~~~~~~~~~~~~~~~~~g~~d~l~KP~~~~~L~~~l~~~~~r~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EECCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 98357654400999999955999879979899999999999999898
No 73
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.94 E-value=1.2e-26 Score=179.28 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=113.8
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 986-6999759989999999999988--9899999997999999971-89989999836559997999999998589985
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~--G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
|+. |||||||++.+|..++.+|+.. |+.|..+.||.+|++.+.. .+||+||+|++||++||+++++++|+..|++|
T Consensus 1 M~~~~VLIvDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~eal~~l~~~~~~DlvllD~~mP~~~G~e~l~~ir~~~p~~~ 80 (154)
T 2qsj_A 1 MSLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99999999949999999999999728998499996689999999974599978998088899888999999998788997
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 999943797899999997699869976979899999999996036
Q gi|254780312|r 77 VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
||++|++.+.+...++++.|+.+|+.||+++++|.++|+++++-+
T Consensus 81 iivlT~~~~~~~~~~a~~~Ga~gyl~K~~~~~~L~~aI~~v~~g~ 125 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred EEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 999980289999999998599889979999999999999998799
No 74
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.94 E-value=2.2e-26 Score=177.74 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=106.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6999759989999999999988989--99999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYE--VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~--v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
||||||||+.+|+.++.+|+.+|+. |..|.||.+|++.+++++||+||+|+.||++||++++++||+..+.+++|++|
T Consensus 11 rvLIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~l~~~~~DlvilDi~mP~~dG~el~~~ir~~~~~~~iI~~t 90 (143)
T 2qv0_A 11 KVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFIT 90 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 89999499999999999998689927999979999999999866999899878888899899999999549998089997
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++++. ..++.+.|+.+||.|||++++|..+++++++.
T Consensus 91 ~~~e~--~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 127 (143)
T 2qv0_A 91 AWKEH--AVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp SCCTT--HHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHH--HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 78899--99999859988997999999999999999999
No 75
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.94 E-value=6.7e-26 Score=174.89 Aligned_cols=118 Identities=21% Similarity=0.296 Sum_probs=112.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-E-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 699975998999999999998898-9-99999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGY-E-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~-~-v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
|||||||++.+|+.++..|+..|. + |.+|+||.+|++++++.+||++++|++||++||++++++||+..|++|+|++|
T Consensus 17 rVLIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDvvllDl~mp~~~G~el~~~ir~~~~~~~vivlS 96 (152)
T 3eul_A 17 RVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLIS 96 (152)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 89999499999999999998598957999989999999999846999999818999989999999999758998599996
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 3797899999997699869976979899999999996036
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++++.+...++.+.|+.+|+.||+++++|.++|+++++.+
T Consensus 97 ~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~aI~~~~~g~ 136 (152)
T 3eul_A 97 AHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp SCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 8699999999998699899979999999999999998799
No 76
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.94 E-value=7.2e-27 Score=180.69 Aligned_cols=116 Identities=25% Similarity=0.322 Sum_probs=105.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-----CCCCC
Q ss_conf 8669997599899999999999889899999997999999971899899998365599979999999985-----89985
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-----DPDLK 76 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-----~~~~p 76 (122)
.-||||||||+.+|..++.+|+.+||+|..|.||.+|++.+++++||+||+|+.||++||++++++||+. .+.+|
T Consensus 10 pl~VLiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~~~~~ip 89 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRAS 89 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCE
T ss_conf 99899993989999999999998799999989999999998707998899947999989999999998352103789983
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99994379789999999769986997697989999999999603
Q gi|254780312|r 77 VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
||++|+++..+. ....|+++|+.|||++++|.++|.++++.
T Consensus 90 ii~~ta~~~~~~---~~~ag~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 90 IIAITADTIDDD---RPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp CEEEESSCCSCC---CCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEEECCCCHHH---HHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 999989962999---98579988998989999999999999745
No 77
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419}
Probab=99.94 E-value=5.3e-26 Score=175.48 Aligned_cols=117 Identities=30% Similarity=0.499 Sum_probs=107.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6699975998999999999998898999999979999999718-998999983655-99979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.||||||||+.+|+.+..+|+.+||+|.+|.||++|++.++++ +||+||+|+.|| ++||+++++++|+..|++|+|++
T Consensus 6 ~~ILiVDDd~~~~~~l~~~L~~~G~~v~~a~s~~eAl~~l~~~~~~dlvi~D~~~p~~~~G~el~~~ir~~~~~~pii~~ 85 (132)
T 2rdm_A 6 VTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYI 85 (132)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 98999979999999999999987999999899999999998389987998730058999999999999974989968999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
||+++.+...++. +...||.|||++++|..+|+++|+.|
T Consensus 86 s~~~~~~~~~~~~--~~~~~L~KP~~~~~L~~~i~~~l~~r 124 (132)
T 2rdm_A 86 SGHAALEWASNGV--PDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp ESSCCTTHHHHSC--TTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred ECCCCHHHHHHHC--CCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 7569989999735--28908989999999999999999987
No 78
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.94 E-value=3.5e-26 Score=176.57 Aligned_cols=120 Identities=25% Similarity=0.399 Sum_probs=113.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|++|||+||||+.++..++..|+..||.|..|.||++|++.+.+..||+||+|+.||+++|+++++++++. +..|+|++
T Consensus 4 Mk~kILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DliilD~~lp~~~g~~~~~~~r~~-~~~~iIil 82 (238)
T 2gwr_A 4 MRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRAD-SGVPIVML 82 (238)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTT-CCCCEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCC-CCCCCCCC
T ss_conf 68749999399999999999999779999998999999999983799999991677666887123112235-66531101
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|+..+.+...++.+.|+++||.|||++.+|..+++.++++.
T Consensus 83 t~~~~~~~~~~al~~Gaddyl~KP~~~~eL~ari~a~lrr~ 123 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 25899999999997799880218999999999999996324
No 79
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.94 E-value=4.4e-26 Score=176.00 Aligned_cols=119 Identities=19% Similarity=0.379 Sum_probs=114.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+++||+||||+..+..++..|+..||.|..|.||++|++.+.++.||+|++|+.||+++|+++++.+++ .+++|+|++
T Consensus 3 M~~~ILlVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DliilDi~lp~~~g~~~~~~~~~-~~~~pii~l 81 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRA-RSSVPVIMV 81 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHH-HCSCSEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-CCCEEEEEE
T ss_conf 9983999969999999999999987999999899999999997489989999489999888742023224-564079998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++.+.+...++.+.|+++||.|||++++|..+++.++++
T Consensus 82 t~~~~~~~~~~~l~~Gaddyl~KP~~~~eL~ari~~~~rr 121 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 2446768888888769988996999999999999999843
No 80
>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1
Probab=99.94 E-value=8.7e-27 Score=180.20 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=104.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 669997599899999999999889899999997999999971-8998999983655999799999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
.||||||||+.+|..+...|+.+||+|.++.||.+|++.+.+ ++||+|++|+.||++||++++++||+..+++|||++|
T Consensus 16 ~rILvVDDd~~~~~~l~~~L~~~G~~v~~~~~g~~al~~l~~~~~~DlvilD~~lP~~dG~~l~~~ir~~~~~~piI~lt 95 (138)
T 2b4a_A 16 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 88999969999999999999985997998099999999998369998899858889988899999999709999689998
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++++. ..++.+.|+ +|+.|||++++|..+|++....
T Consensus 96 ~~~~~--~~~~~~~ga-dyL~KP~~~~eL~a~v~~~~~~ 131 (138)
T 2b4a_A 96 TGRHE--LIESSEHNL-SYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp SCC----CCCCSSSCE-EEEESSCCHHHHHHHHHHTCCC
T ss_pred CCHHH--HHHHHHCCC-CEEECCCCHHHHHHHHHHHCCC
T ss_conf 98179--999853699-8898999999999999985611
No 81
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.94 E-value=1.1e-25 Score=173.61 Aligned_cols=118 Identities=21% Similarity=0.242 Sum_probs=107.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHH------CCCCEEEEEEECCCCCHHHHHHHHHHH--C
Q ss_conf 669997599899999999999889--899999997999999971------899899998365599979999999985--8
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVRE------EPFSLLLTDIVMPEMDGIELARRATEL--D 72 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~------~~~dlii~D~~mP~~dG~el~~~ir~~--~ 72 (122)
-||||||||+.+++.++.+|+.+| |+|.+|.||++|++++.+ .+||+||+|+.||++||++++++||+. .
T Consensus 8 ~~ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~dliilD~~mP~~~G~el~~~ir~~~~~ 87 (143)
T 2qvg_A 8 VDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSF 87 (143)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGG
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf 98999979999999999999976998499998999999999984123303798789964878899727999999857777
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 998599994379789999999769986997697989999999999603
Q gi|254780312|r 73 PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 73 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+++|+|++|++++.....++.+.|+++|+.|||+.++|++.+..+.++
T Consensus 88 ~~ipiI~lS~~~~~~~~~~a~~~G~~~~l~KPv~~~~ll~~~~~~~~l 135 (143)
T 2qvg_A 88 TDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp TTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 999199997889999999999879989998979999999999999973
No 82
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.94 E-value=8.4e-26 Score=174.31 Aligned_cols=120 Identities=28% Similarity=0.425 Sum_probs=114.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|+.||||||||+.++..++..|+..||+|..|.||++|++.+.++.||++++|+.||+++|++++.++++..+.+|+|++
T Consensus 6 ~~pkILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dlvilD~~lp~~~g~~~~~~~r~~~~~~~iiil 85 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVL 85 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEECC
T ss_conf 99879999799999999999999789999998999999999974799789752238755686223101235777623314
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++++.+...++++.|+++||.|||++.+|..+++.++..
T Consensus 86 t~~~~~~~~v~al~~GAddyl~KP~~~~eL~a~i~~~~~~ 125 (233)
T 1ys7_A 86 SARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp ECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 5668899999999779929997899879999999999986
No 83
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406}
Probab=99.93 E-value=7.4e-25 Score=168.66 Aligned_cols=118 Identities=24% Similarity=0.245 Sum_probs=106.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHH-----CCCCEEEEEEECCCCCHHHHHHHHHHHC---
Q ss_conf 6699975998999999999998898--99999997999999971-----8998999983655999799999999858---
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPEMDGIELARRATELD--- 72 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~--~v~~a~~g~~al~~~~~-----~~~dlii~D~~mP~~dG~el~~~ir~~~--- 72 (122)
++|||||||+.++..++..|+..|+ +|.+|.||++|++.+++ ++||+|++|++||++||++++++||+..
T Consensus 10 ~~ILiVDDd~~~~~~l~~~l~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~pdliilD~~MP~~dG~el~~~ir~~~~~~ 89 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPM 89 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGG
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 97999979899999999999977998189998999999999986310278999999848989997599999998608512
Q ss_pred -CCCCEEEEECCCCHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf -9985999943797899999997-69986997697989999999999603
Q gi|254780312|r 73 -PDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 73 -~~~pii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
..+|+|++|+..+.....++.. .|+++|+.|||+.++|.++++++|+.
T Consensus 90 ~~~~~viilts~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 139 (146)
T 3ilh_A 90 KNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp TTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 48871999978899899999999779988997989999999999999971
No 84
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.93 E-value=2.8e-25 Score=171.20 Aligned_cols=115 Identities=22% Similarity=0.322 Sum_probs=106.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858--9985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~ 79 (122)
+.||||||||+.+++.++..|+.+||+|..+.||++|++.+++.+||+|++|+.||+++|+++++++|+.. +.+|+|+
T Consensus 1 a~rILiVdd~~~~~~~~~~~L~~~g~~v~~a~~~~~al~~l~~~~pdlvllD~~lp~~~G~~l~~~lr~~~~~~~~pii~ 80 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99899997999999999999998899999989999999999817999899963799999999999998288889864999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9437978999999976998699769798999999999960
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+|+..+. .++.+.|+++|+.|||++++|+.+++++++
T Consensus 81 ~t~~~~~---~~~~~~ga~~~l~KP~~~~~L~~~v~~ll~ 117 (119)
T 2j48_A 81 FLGEPPV---DPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EESSCCS---SHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred EECCHHH---HHHHHCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf 9771889---999987998999898999999999998839
No 85
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.92 E-value=3e-24 Score=164.97 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=99.6
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986-69997599899999999999889--899999997999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+| |||||||++.+|+.++.+|+..| +.|..|.||.+|++++++..||+|++|++||+|||+|+++++++..| .|+
T Consensus 1 M~kiRVLIVDD~~~~R~~l~~~L~~~~~~~vV~~A~~g~eAl~~~~~~~pDvvilDi~MP~mdGle~l~~i~~~~~-~~i 79 (349)
T 1a2o_A 1 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRP-MPV 79 (349)
T ss_dssp CCCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHSSC-CCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCC
T ss_conf 9988899995989999999999985889699999799999999996279989999797899998999999887589-970
Q ss_pred EEEECCCC--HHHHHHHHHCCCCEEEECCCCH---------HHHHHHHHHHHHC
Q ss_conf 99943797--8999999976998699769798---------9999999999603
Q gi|254780312|r 78 MFITGFAA--VALNPDSNAPKNAKVLSKPFHL---------RDLVNEVNRLLTI 120 (122)
Q Consensus 78 i~~s~~~~--~~~~~~~~~~g~~~~l~KP~~~---------~~L~~~i~~~l~~ 120 (122)
+++++.+. .+...++++.|+.+|+.||+.. +.|.++++.+.+.
T Consensus 80 i~i~~~~~~~~~~~~~Al~~GA~dyl~KP~~~~~~~~~~~~~~L~~kir~~~~~ 133 (349)
T 1a2o_A 80 VMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 489998504417778899759819997784024568999999988888876754
No 86
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C}
Probab=99.92 E-value=8.2e-25 Score=168.37 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=109.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHHCCCCCEEEEE
Q ss_conf 699975998999999999998898999999979999999718998999983655999--799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD--GIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~d--G~el~~~ir~~~~~~pii~~s 81 (122)
+|||||||+.+|..++..|+.+||+|.++.||.+|++.+.+++||++|+|+.||+++ |++++.+++...+.+|+|++|
T Consensus 8 ~VLIVDDd~~~r~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~d~vilD~~l~~~~~~gl~~~~~~~~~~~~~pvi~lt 87 (136)
T 3kto_A 8 IIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMA 87 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf 79999799999999999999879999998999999999984799889999368647884089999997502688679997
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 3797899999997699869976979899999999996036
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|+++.+...++.+.|+++||.|||++++|..+|+++|+.+
T Consensus 88 ~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 127 (136)
T 3kto_A 88 SSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp SSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 0599999999997599489989899999999999999984
No 87
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=99.92 E-value=5.7e-24 Score=163.32 Aligned_cols=118 Identities=24% Similarity=0.383 Sum_probs=111.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|=.||||||||+.+++.++..|+..|+ |.++.+|.+|+. ..+.||++|+|+.||+++|+++++++++..+.+|+|++
T Consensus 1 mM~kILiVdDd~~~~~~l~~~L~~~g~-v~~~~~~~eal~--~~~~~DlvilD~~lp~~~g~~~~~~~~~~~~~~~iiil 77 (220)
T 1p2f_A 1 MMWKIAVVDDDKNILKKVSEKLQQLGR-VKTFLTGEDFLN--DEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTTEE-EEEESSHHHHHH--CCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCE-EEEECCHHHHHH--HCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEC
T ss_conf 998899995989999999999986999-999879999995--27899999997999988860233321102442034301
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++.+.+...++.+.|+++|+.|||++.+|..+|++++++.
T Consensus 78 t~~~~~~~~~~~~~~gaddyl~KP~~~~eL~~ri~~~l~r~ 118 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 22323003675441465222435732001899999998305
No 88
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.91 E-value=2.7e-24 Score=165.31 Aligned_cols=116 Identities=22% Similarity=0.379 Sum_probs=97.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEE-EEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHC-CCCCEE
Q ss_conf 66999759989999999999988-9899-9999979999999718-998999983655999799999999858-998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA-GYEV-VSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIELARRATELD-PDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~-G~~v-~~a~~g~~al~~~~~~-~~dlii~D~~mP~~dG~el~~~ir~~~-~~~pii 78 (122)
.||||||||+.+|..++.+|+.. |+++ .+|.||.+|++.+.++ .||+||+|++||++||++++++||+.. +.+|+|
T Consensus 14 ~rVLIVDD~~~~r~~l~~~L~~~~~~~vv~~A~~g~eAl~~l~~~~~~DliilD~~MP~~dG~e~~~~ir~~~~~~i~ii 93 (145)
T 3kyj_B 14 YNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRAKICML 93 (145)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCCEEC-C
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 78999969899999999999859994699998999999999983699989998789999999999999985699693999
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCH----------HHHHHHHHHHH
Q ss_conf 99437978999999976998699769798----------99999999996
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHL----------RDLVNEVNRLL 118 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~----------~~L~~~i~~~l 118 (122)
++|++++.+...++.+.|+++||.|||+. .+|.++++.++
T Consensus 94 ~~t~~~~~~~~~~a~~~Ga~~yl~KP~~~~~~~l~~~~~~~l~~~~r~l~ 143 (145)
T 3kyj_B 94 SSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKTGGELARTMRTLM 143 (145)
T ss_dssp BSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CTTHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99607998999999986998999899984778999999999999999983
No 89
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.90 E-value=2.1e-22 Score=153.97 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=111.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997599899999999999889--8999999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
|||||||++.+|..++.+|+..| +.|..|.||++|++.+.+.+||++++|+.||+++|+++++.+++..|.+|++++|
T Consensus 7 rILIvdD~~~~~~~l~~~L~~~~~~~~v~~a~~~~~~l~~~~~~~pdlvllD~~lp~~~G~~~~~~~~~~~~~~~iivlt 86 (215)
T 1a04_A 7 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFS 86 (215)
T ss_dssp EEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89999298999999999998589928999979999999999746996899968889989862321011245665543443
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 3797899999997699869976979899999999996036
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++++.+...++.+.|+++|+.||++..++..++.+++...
T Consensus 87 ~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~~i~~~~~~~ 126 (215)
T 1a04_A 87 VSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp CCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 6799999999998499898602599999999999998488
No 90
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=99.90 E-value=1.7e-22 Score=154.48 Aligned_cols=113 Identities=13% Similarity=0.227 Sum_probs=104.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
|||+||||+..+..+...|+..||.|..|.+|.+|++.+..+.||+|+ ||++||++++++||+..+.+|||++|+.
T Consensus 2 rILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~Dlvi----lp~~~G~~l~~~ir~~~~~~pIi~lt~~ 77 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIKEKHSSIVVLVSSDN 77 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEEESS
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEE----ECCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 899993899999999999998799999989999999998458999999----5898899999998764898329982366
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCH-HHHHHHHHHHHHC
Q ss_conf 978999999976998699769798-9999999999603
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHL-RDLVNEVNRLLTI 120 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~-~~L~~~i~~~l~~ 120 (122)
++.+...++.+.|+++|+.|||+. +.|..+++.+++.
T Consensus 78 ~~~~~~~~~l~~Gaddyl~KP~~~~~~l~~~~~~~~r~ 115 (223)
T 2hqr_A 78 PTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp CCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 75899999875399707872422025689999999720
No 91
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.89 E-value=3.9e-23 Score=158.31 Aligned_cols=113 Identities=15% Similarity=0.222 Sum_probs=104.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
-||||||||+.+|..+...|+..||+|.++.+|.+|+ .++||+|++|+.||+++|++++..+++ .|++|||++|+
T Consensus 13 l~vLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~al----~~~~D~vl~D~~mp~~~~~~~~~~~~~-~~~~pvI~lt~ 87 (196)
T 1qo0_D 13 LQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DVPVDVVFTSIFQNRHHDEIAALLAAG-TPRTTLVALVE 87 (196)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SSCCSEEEEECCSSTHHHHHHHHHHHS-CTTCEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHC----CCCCCEEEEECCCCCCCHHHHHHHHHC-CCCCCEEEEEC
T ss_conf 8699995799999999999998699887169979984----889998998489999859999999864-99998899845
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 79789999999769986997697989999999999603
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+++.+...++.+.|+.+|+.|||++++|..++..++..
T Consensus 88 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 88 YESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 79999999999859998655999989999999999999
No 92
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima}
Probab=99.85 E-value=1.4e-21 Score=148.94 Aligned_cols=98 Identities=21% Similarity=0.452 Sum_probs=88.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|.+||+||++ |.||.+|++.+.+..||+|++|++||+|||++++++||+..|++|+|++
T Consensus 1 m~~~i~vv~~---------------------A~~g~eal~~~~~~~pdlv~~Di~mP~~~G~~~~~~i~~~~~~~~ii~~ 59 (237)
T 3cwo_X 1 MGKRVLIVDD---------------------ATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC 59 (237)
T ss_dssp -CCCEEEEEC---------------------CCSSSTTHHHHHHHCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEE
T ss_pred CCCCEEEEEE---------------------ECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 9986799998---------------------5999999999984399999992878998999999999986899849999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHH--HHHHHHHHHHH
Q ss_conf 4379789999999769986997697989--99999999960
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLR--DLVNEVNRLLT 119 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~--~L~~~i~~~l~ 119 (122)
|++++.+...++++.|+++|+.||++.+ +|+..+.+.+.
T Consensus 60 t~~~~~~~~~~a~~~Ga~~y~~Kp~~~~~~~li~~~~~~~~ 100 (237)
T 3cwo_X 60 SAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp CCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 81651323247884598769989856367799999999986
No 93
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.81 E-value=1e-19 Score=137.78 Aligned_cols=118 Identities=23% Similarity=0.314 Sum_probs=110.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 66999759989999999999988-9899-999997999999971899899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA-GYEV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~-G~~v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.|||||||++.+|..++.+|+.. ++++ ..|.++.+|++.+.+.+||++++|+.||+++|+++++.+++..|++|+|++
T Consensus 2 irIlivdD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pdlvl~d~~l~~~~g~~~~~~l~~~~~~~~vi~~ 81 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLIL 81 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEG
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf 88999969899999999999858994899997999999999986599899982778998615898875302899857863
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++.+.....++.+.|+.+|+.||++.+++..++..+++.
T Consensus 82 t~~~~~~~~~~al~~Ga~~~l~K~~~~~~l~~~i~~v~~~ 121 (225)
T 3c3w_A 82 TSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 (225)
T ss_dssp GGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 1566578999999849887740677799999999999869
No 94
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.77 E-value=4.4e-19 Score=134.04 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=96.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|++|||||||++..|+.+...|...|+.+..+.++.+|+..+.+.+||+|++|+.||+++|+++++.+++. ++|++++
T Consensus 3 ~~~rILvVdD~~~~~~~l~~~L~~~~~~~v~~~~~~ea~~~~~~~~~dlillD~~mP~~~g~e~~~~l~~~--~~pvi~~ 80 (259)
T 3luf_A 3 LKQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLEGARHCQGDEYVVALVDLTLPDAPSGEAVKVLLER--GLPVVIL 80 (259)
T ss_dssp -CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEESSTGGGTTCCTTTEEEEEEESCBTTBTTSHHHHHHHHT--TCCEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHC--CCCCCCC
T ss_conf 88879999799999999999999759989999386999999658999889997888754023578987640--3874234
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHH
Q ss_conf 43797899999997699869976979899999
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~ 112 (122)
|+.........+...|+.+|+.||.....+..
T Consensus 81 t~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 112 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRHSLQYA 112 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 67545788999997488644454321000027
No 95
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.60 E-value=7e-16 Score=114.87 Aligned_cols=117 Identities=15% Similarity=0.055 Sum_probs=100.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCE--EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH-HHCCCCCEE
Q ss_conf 66999759989999999999988-989--99999979999999718998999983655999799999999-858998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA-GYE--VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT-ELDPDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~-G~~--v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir-~~~~~~pii 78 (122)
-+||+|||++..+..++..|+.. +.. +..+.++..+.....+.++|++++|+.||+++|++.+.+++ ...|++|+|
T Consensus 8 ~~VllvdD~~l~~~~L~~~Le~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~D~~~~~~~~~~~~~~~~~~~~p~~~vi 87 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEV 87 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 98999828799999999999478996499997576899986244258888997236899736999999999758998499
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99437978999999976998699769798999999999960
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
++|++.+......+.+.|+.+|+.|+.+.++|..+++.+++
T Consensus 88 vlt~~~~~~~~~~~~~~Ga~g~l~K~~~~~~L~~ai~~v~~ 128 (225)
T 3klo_A 88 IINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp EEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 99615668999999986995999779999999999999847
No 96
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.70 E-value=1.3e-06 Score=59.31 Aligned_cols=116 Identities=14% Similarity=0.240 Sum_probs=95.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEE
Q ss_conf 8669997599899999999999889899999997999999971899899998365599979999999985--89985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~ 79 (122)
..+++++|++...+..+...+....+.... .+ ..+.......++|++++|..||.++|.+++...+.. ...+|++.
T Consensus 152 ~~~~~~~d~~~~~~~~l~~~l~~~~~~~~~-~~-~~~~~l~~~~~~dlvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGVEHRPVIE-SD-PEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLA 229 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTTTSEEEEE-CC-HHHHHHHHHSSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEE
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCEEEEE-CC-HHHHHHHCCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 653553053599999999985315607773-68-6899983599960999613651331488988876410043311221
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9437978999999976998699769798999999999960
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+++.........+.+.|+.+|+.||+.+.++...+...+.
T Consensus 230 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 269 (459)
T 1w25_A 230 MVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQ 269 (459)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHH
T ss_conf 2575307899999981553110455310011455555544
No 97
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.18 E-value=3.9e-05 Score=50.48 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=79.3
Q ss_pred EEEEECCCHH--------HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCH----HHHHHHHHH
Q ss_conf 6999759989--------99999999998898999999979999999718-9989999836559997----999999998
Q gi|254780312|r 4 KILLAEDDDD--------MRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG----IELARRATE 70 (122)
Q Consensus 4 rILiVDD~~~--------~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP~~dG----~el~~~ir~ 70 (122)
||||||++-. -.+-+...+++.||+|..+.|-++|+..++++ ..+++++||.+++.+. .++++.+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 69999155557674011689999999986791899848789999999758887689997068885321349999999997
Q ss_pred HCCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECCCC-HHHHHHHHHHH
Q ss_conf 5899859999437978-99999997699869976979-89999999999
Q gi|254780312|r 71 LDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRL 117 (122)
Q Consensus 71 ~~~~~pii~~s~~~~~-~~~~~~~~~g~~~~l~KP~~-~~~L~~~i~~~ 117 (122)
.++++||.+++-.... +......-..+..|+-.-=+ ++-...+|.++
T Consensus 82 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 130 (755)
T 2vyc_A 82 RQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAA 130 (755)
T ss_dssp HSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHH
T ss_pred HCCCCCEEEEECCCCCHHHCCHHHHHHHHEEEECCCCCHHHHHHHHHHH
T ss_conf 3889998999546530310789898641357761578789999999999
No 98
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=97.33 E-value=0.0093 Score=36.23 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=85.8
Q ss_pred CEEEE--E--CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCC-CHH-HHHHHHHHHC-
Q ss_conf 66999--7--59989999999999988989999---9997999999971899899998365599-979-9999999858-
Q gi|254780312|r 3 QKILL--A--EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMPEM-DGI-ELARRATELD- 72 (122)
Q Consensus 3 ~rILi--V--DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~mP~~-dG~-el~~~ir~~~- 72 (122)
+||++ + |-+..-..++..+|+..||+|.- ....++..+.+.+..+|+|.+-..|+.. ..+ ++.+.+|+..
T Consensus 4 ~kVvi~~~~~D~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~iv~~~~~~~~d~V~iS~~~~~~~~~~~~~i~~L~~~~~ 83 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGL 83 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 87999946987458999999999998798799778666999999999983998788761134455779999999997499
Q ss_pred CCCCEEEEECCC------CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 998599994379------7899999997699869976979899999999996036
Q gi|254780312|r 73 PDLKVMFITGFA------AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 73 ~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
.++|++ +-|.. ..+...+..+.|++......-.+++..+.+++.|+++
T Consensus 84 ~~v~ii-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~gt~~~~~~~~i~~~l~~~ 137 (137)
T 1ccw_A 84 EGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDLNIE 137 (137)
T ss_dssp TTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHHTCC
T ss_pred CCCEEE-EECCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 999799-978878874441889999997598889799889999999999986779
No 99
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1}
Probab=97.23 E-value=0.0094 Score=36.22 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=83.7
Q ss_pred EEEEE----CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCC-C-HHHHHHHHHHHCCC
Q ss_conf 69997----59989999999999988989999---9997999999971899899998365599-9-79999999985899
Q gi|254780312|r 4 KILLA----EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMPEM-D-GIELARRATELDPD 74 (122)
Q Consensus 4 rILiV----DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~mP~~-d-G~el~~~ir~~~~~ 74 (122)
|||+. |.+..=..++..+|+..||+|.- -.+.++..+.+.++.+|+|.+-..|... . --++.+.+++....
T Consensus 20 rvvia~~~~D~HdiG~~~va~~l~~~G~eV~~LG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~L~~~g~~ 99 (161)
T 2yxb_A 20 KVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGAD 99 (161)
T ss_dssp EEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCT
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 79998049862478899999999978988997897789999999998669989998557664489999999999975999
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 859999437978999999976998699769798999999999960
Q gi|254780312|r 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 75 ~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
-+.|++-|...........+.|++.+...--+..+..+.++++++
T Consensus 100 ~i~i~vGG~~~~~d~~~l~~~Gvd~vF~pgt~~~e~v~~l~~~~~ 144 (161)
T 2yxb_A 100 DIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp TSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 987999668798889999977988884998999999999999999
No 100
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.68 E-value=0.036 Score=32.68 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=69.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986699975998999999999998---89899999997999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~---~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+.++.|.|.|....+-+..+|.. ..+++..+++.+...+.+++.++|+++++-.++...+ +.....++
T Consensus 20 Mki~l~i~d~d~~y~~~L~~~l~~~~~~~~~~~~fs~~e~l~~~~~~~~~dvlli~~~~~~~~~--------~~~~~~~~ 91 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDFNIDKS--------EFKRNCGL 91 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHTCSEEEEETTCCCCGG--------GGCSSCEE
T ss_pred CEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHH--------HHHHCCCE
T ss_conf 7478999967799999999998553278449999478999999986079989998886565455--------43203662
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9994379789999999769986997697989999999999
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 117 (122)
.+++.....+ ..+....+.|+-+.++++..+.+.
T Consensus 92 ~~l~~~~~~~------~~~~~~~i~Kyq~~~~i~~~i~~~ 125 (373)
T 3fkq_A 92 AYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGV 125 (373)
T ss_dssp EEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHH
T ss_pred EEECCCCCCC------CCCCCCCHHCCCCHHHHHHHHHHH
T ss_conf 7861678854------334544201266688999999999
No 101
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=94.74 E-value=0.034 Score=32.88 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=45.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHH
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~e 63 (122)
.+|++++++|...+..+...|+.+|+.+..+.+.. ...+|++++|..+|...|..
T Consensus 11 G~ri~l~~~n~~~~~~L~~~L~~~G~~v~~~~~~~-------~~~~d~~i~d~~~~~~~~~~ 65 (254)
T 2ayx_A 11 GKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE-------PTPEDVLITDEVVSKKWQGR 65 (254)
T ss_dssp TEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSCC-------CCTTCEEEEESSCSCCCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCC-------CCCCCEEEECCCCCCCCCCC
T ss_conf 98899990798999999999997799898344467-------78897798558766554610
No 102
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=92.82 E-value=0.54 Score=25.67 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=60.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCCCCEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979-99999998589985999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~~pii~ 79 (122)
|+|+|||---...+-..++..|.+.|+.|.....-++.++.+.++..++...-..+-+.+.. ++++.+.+....+-+++
T Consensus 1 MnK~vlITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLV 80 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV 80 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99889996688889999999999879989999798899999997269869999206999999999999999809987999
Q ss_pred EEC
Q ss_conf 943
Q gi|254780312|r 80 ITG 82 (122)
Q Consensus 80 ~s~ 82 (122)
-.+
T Consensus 81 nnA 83 (247)
T 3dii_A 81 NNA 83 (247)
T ss_dssp ECC
T ss_pred ECC
T ss_conf 889
No 103
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=92.59 E-value=0.58 Score=25.49 Aligned_cols=118 Identities=6% Similarity=0.040 Sum_probs=71.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHH--CCCCEEEEE----------EECC----CCCHHH
Q ss_conf 9866999759989999999999988989999-9997999999971--899899998----------3655----999799
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVRE--EPFSLLLTD----------IVMP----EMDGIE 63 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~--~~~dlii~D----------~~mP----~~dG~e 63 (122)
|+.||+.+-.++..++.+.++-.+.++.+.. ..+-.+|.+..++ ..+|+||.- +..| ..+|++
T Consensus 3 ~~~kI~~iap~e~l~~l~~~~a~~~~~~~~~~~~~l~~~~~iA~~l~~~~DVIISRGgTa~~Ir~~~~iPVVeI~vs~~D 82 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFD 82 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEEEECCCHHH
T ss_conf 75159998793889999999997548756788666999999999754398799989658999998289977998078879
Q ss_pred HHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999985899859999437978--99999997699869976979899999999996
Q gi|254780312|r 64 LARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 64 l~~~ir~~~~~~pii~~s~~~~~--~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
+++.+++.....+-|.+.|+.+. ....-+.-.+..-...-.-+.+++...+.++.
T Consensus 83 il~al~~a~~~~~kiavvgf~~~~~~~~~i~~ll~~~i~~~~~~~~~e~~~~i~~l~ 139 (196)
T 2q5c_A 83 TMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVK 139 (196)
T ss_dssp HHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 999999999758978999678501589999998599559999668899999999999
No 104
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=92.43 E-value=0.61 Score=25.36 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECC-CCCHH-HHHHHHHHHCCCCCEEEEECC
Q ss_conf 59989999999999988989999---99979999999718998999983655-99979-999999985899859999437
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMP-EMDGI-ELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~-el~~~ir~~~~~~pii~~s~~ 83 (122)
|-+..=..++..+|+..||+|.- -...++.++.+.+..||+|.+-..|+ .++.+ ++.+.+++..+++||++ -|.
T Consensus 134 d~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~i~~~v~~~~~d~vglS~~l~~~l~~~~~~i~~l~~~~~~~~iiv-GGa 212 (258)
T 2i2x_B 134 DVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFAC-GGG 212 (258)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEE-EST
T ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE-ECC
T ss_conf 8017899999999998799389789989999999999982999899941556767999999999997499994898-898
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 978999999976998699769798999999999960
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
.-. ..-+.+.|++.|-.-+.+--++ .+++++
T Consensus 213 ~~~--~~~a~~~gaD~~a~da~~av~~---a~~l~~ 243 (258)
T 2i2x_B 213 AVN--QDFVSQFALGVYGEEAADAPKI---ADAIIA 243 (258)
T ss_dssp TCC--HHHHHTSTTEEECSSTTHHHHH---HHHHHT
T ss_pred CCC--HHHHHHHCCCEECCCHHHHHHH---HHHHHC
T ss_conf 799--9999982988476799999999---999975
No 105
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=90.64 E-value=0.79 Score=24.66 Aligned_cols=103 Identities=10% Similarity=0.088 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE--EC-CHHHHHHHHHHCCCCEEEEEEECC-CCCH-HHHHHHHHHHC--CCCCEEEEE
Q ss_conf 59989999999999988989999--99-979999999718998999983655-9997-99999999858--998599994
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVS--CN-NGASAYDKVREEPFSLLLTDIVMP-EMDG-IELARRATELD--PDLKVMFIT 81 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~--a~-~g~~al~~~~~~~~dlii~D~~mP-~~dG-~el~~~ir~~~--~~~pii~~s 81 (122)
|.+..=..+++.+|+..||+|.- +. ..++..+.+++..||+|.+-..|+ .+.. -++++.+++.. +++||+ +-
T Consensus 99 e~H~lG~~~va~~l~~~Gw~V~~LG~~vp~e~l~~~~~~~~~~~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~-vG 177 (210)
T 1y80_A 99 DLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVI-VG 177 (210)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEE-EE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEE-EE
T ss_conf 77789999999999988984885678999999999998529999999843567799999999999984899999699-98
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 379789999999769986997697989999999999
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 117 (122)
|..-. ..-+...|++.|-. +..+-.+..+++
T Consensus 178 G~~~~--~~~a~~~GaD~~a~---da~~av~~a~~l 208 (210)
T 1y80_A 178 GAPLS--QDFADEIGADGYAP---DAASATELCRQL 208 (210)
T ss_dssp STTCC--HHHHHHHTCSEECS---SHHHHHHHHHHH
T ss_pred CCCCC--HHHHHHHCCCEEEC---CHHHHHHHHHHH
T ss_conf 92089--99999939988978---999999999998
No 106
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=89.91 E-value=0.65 Score=25.16 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEE--EECC-CCC-HHHHHHHHHHHC--CCCCEEE
Q ss_conf 59989999999999988989999--9-997999999971899899998--3655-999-799999999858--9985999
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVS--C-NNGASAYDKVREEPFSLLLTD--IVMP-EMD-GIELARRATELD--PDLKVMF 79 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~--a-~~g~~al~~~~~~~~dlii~D--~~mP-~~d-G~el~~~ir~~~--~~~pii~ 79 (122)
|-+..=..+++.+|+..||+|.- + ...++.++.+.+..||+|.+- ..|+ .+. -.++.+.+|+.. +++||+
T Consensus 103 d~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~~~~~~~~~~~d~v~ls~S~~~~~~~~~~~~~i~~lr~~~~~~~v~v~- 181 (215)
T 3ezx_A 103 DIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCM- 181 (215)
T ss_dssp CCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEE-
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-
T ss_conf 8888999999999997799699888999999999999973998148998566543369999999999980888999599-
Q ss_pred EECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 94379789999999769986997
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
+-|..-. ..-+...|++.|-.
T Consensus 182 vGGa~~~--~~~a~~~GAD~~a~ 202 (215)
T 3ezx_A 182 FGGAPVS--DKWIEEIGADATAE 202 (215)
T ss_dssp EESSSCC--HHHHHHHTCCBCCS
T ss_pred EECCCCC--HHHHHHHCCCEECC
T ss_conf 8890279--99999839887838
No 107
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reductase family; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8}
Probab=89.54 E-value=1.2 Score=23.67 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=56.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCCCCEEE
Q ss_conf 986699975998999999999998898999999979999999718998999983655999799-9999998589985999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~pii~ 79 (122)
|+++|||.--...+-..+...|.+.|+.|..+.--++.++.+.++-.+....-..+-+.+..+ +++.+.+....+-+++
T Consensus 4 mk~~VlITGas~GIG~a~a~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilv 83 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV 83 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99889997767499999999999879999999899999999999856865996567989999999999999759997999
Q ss_pred EE
Q ss_conf 94
Q gi|254780312|r 80 IT 81 (122)
Q Consensus 80 ~s 81 (122)
-.
T Consensus 84 nn 85 (234)
T 2ehd_A 84 NN 85 (234)
T ss_dssp EC
T ss_pred EC
T ss_conf 89
No 108
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=89.05 E-value=1.3 Score=23.46 Aligned_cols=110 Identities=12% Similarity=-0.008 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHCC---------CEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHH
Q ss_conf 599899999999999889---------89999---9997999999971899899998365599979-----999999985
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAG---------YEVVS---CNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATEL 71 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G---------~~v~~---a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~ 71 (122)
|-+..=.+.+..+++..| |+|.- ..+.++..+.+.++.+|+|.+-..|..-++. ++.+.+++.
T Consensus 131 D~H~~G~~~v~~~~~~aG~~~~e~~~~feVi~LG~~vp~ee~v~~a~e~~aD~VgvS~llt~~~~h~~~~~~li~~l~e~ 210 (262)
T 1xrs_B 131 DAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAE 210 (262)
T ss_dssp CCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 44477899999999875864300268449996888999999999998649999999752155233789999999999966
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 899-8599994379789999999769986997697989999999999603
Q gi|254780312|r 72 DPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 72 ~~~-~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
... -+.+++-|.... ..-+.+.|++.+...--...+..+.+.+.+..
T Consensus 211 gl~~~v~vivGG~~~~--~~~a~~lGaDavfg~gt~~~dva~~l~~~l~~ 258 (262)
T 1xrs_B 211 GLRDRFVLLCGGPRIN--NEIAKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp TCGGGSEEEEECTTCC--HHHHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCC--HHHHHHCCCCEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9988958999899899--99999779988769998899999999999998
No 109
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (ggdef & EAL domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans atcc 25259} PDB: 3ii8_A* 3n3t_A*
Probab=88.75 E-value=0.43 Score=26.26 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-CC--C--HHHHHHHHHHHC--CCCCEEE
Q ss_conf 5998999999999998898999--999979999999718998999983655-99--9--799999999858--9985999
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMP-EM--D--GIELARRATELD--PDLKVMF 79 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP-~~--d--G~el~~~ir~~~--~~~pii~ 79 (122)
+|.......+ ..|...||.+. -+.+|..-++.+..-+||.|=+|...= +. + ...+++.+-... -++++ +
T Consensus 160 ~~~~~~~~~i-~~L~~~G~~ialDdfg~~~~~~~~l~~l~~d~VKid~~~i~~~~~~~~~~~~l~~ii~~a~~~~~~v-I 237 (294)
T 2r6o_A 160 VMTDEVRTCL-DALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEV-V 237 (294)
T ss_dssp GCCHHHHHHH-HHHHHHTCEEEEEEETSSCBCHHHHHHSCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEE-E
T ss_pred CCHHHHHHHH-HHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEE-E
T ss_conf 4589999999-9999709879984799971238998643643205659999622357567999999999999869989-9
Q ss_pred EECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
Q ss_conf 94379789999999769986----99769798999999999
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAK----VLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~----~l~KP~~~~~L~~~i~~ 116 (122)
..|..+.+....+...|++. |+.||...+++..-+++
T Consensus 238 aeGVEt~~~l~~l~~lGid~~QG~~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 238 AEGIETAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp ECCCCSHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 98488299999999869999986901346999999999985
No 110
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=88.55 E-value=0.32 Score=27.06 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=38.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTD 53 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D 53 (122)
|++||||.-- =.+-..+.+.|.+.||+|.+.....+....+.....+.++.|
T Consensus 4 M~~~vlItGa-GfIGs~lv~~Ll~~G~~V~~l~R~~~~~~~l~~~~~~~~~~d 55 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWP 55 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECC
T ss_conf 8983899896-199999999999789989999488365578875696799646
No 111
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=88.34 E-value=1.4 Score=23.17 Aligned_cols=115 Identities=14% Similarity=0.185 Sum_probs=76.3
Q ss_pred EEEEE----CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCC----HHHHHHHHHHHC
Q ss_conf 69997----59989999999999988989999---99979999999718998999983655999----799999999858
Q gi|254780312|r 4 KILLA----EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMPEMD----GIELARRATELD 72 (122)
Q Consensus 4 rILiV----DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~mP~~d----G~el~~~ir~~~ 72 (122)
||||+ |-...=+..++..+...||+|.. +.+++|+.+...+...|+|.+-.. +-+ --++++.+|+..
T Consensus 606 rillakmG~dgH~~ga~~iA~~F~d~GfeV~~~~~f~TpeE~a~aA~e~~a~vvgics~--d~~h~~lvp~l~~~Lk~~g 683 (762)
T 2xij_A 606 RLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTL--AAGHKTLVPELIKELNSLG 683 (762)
T ss_dssp EEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEEC--SSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHHHHCC
T ss_conf 59996578774410199999999857902852787789999999999769999999268--7656889999999999669
Q ss_pred -CCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-CC---CHHHHHHHHHHHHHCC
Q ss_conf -9985999943797899999997699869976-97---9899999999996036
Q gi|254780312|r 73 -PDLKVMFITGFAAVALNPDSNAPKNAKVLSK-PF---HLRDLVNEVNRLLTIK 121 (122)
Q Consensus 73 -~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K-P~---~~~~L~~~i~~~l~~~ 121 (122)
+++||++ -|.--.+......+.|++.|..- -. .-.++++.|++.++.+
T Consensus 684 ~~~i~Vvv-gGviP~~d~~~l~~aGV~~if~pg~~i~~~~~~i~~~i~~~~~~~ 736 (762)
T 2xij_A 684 RPDILVMC-GGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCLEKK 736 (762)
T ss_dssp CTTSEEEE-EESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEE-ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99867998-077887889999986988783999829999999999999999888
No 112
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=87.67 E-value=1.6 Score=22.92 Aligned_cols=91 Identities=10% Similarity=0.096 Sum_probs=58.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 98669997599899999999999889-89999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G-~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++||+|+-- =.+...+.+.|...| +++..+..-.+..+.+....+..+..|+. -.+.+++ .-+..-+++
T Consensus 4 m~~kI~ViGa-G~vG~~va~~L~~~~~~~v~~~dr~~~~~~~~~~~~~~~~~~d~~-----d~~~l~~---~l~~~DvVi 74 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAK-----DEAGLAK---ALGGFDAVI 74 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTT-----CHHHHHH---HTTTCSEEE
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCC-----CHHHHHH---HHCCCCEEE
T ss_conf 6078899867-999999999998789984786126566641000122221112448-----9999999---985998999
Q ss_pred EEC-C-CCHHHHHHHHHCCCCEE
Q ss_conf 943-7-97899999997699869
Q gi|254780312|r 80 ITG-F-AAVALNPDSNAPKNAKV 100 (122)
Q Consensus 80 ~s~-~-~~~~~~~~~~~~g~~~~ 100 (122)
.+. + ........+.+.|+..+
T Consensus 75 ~~~p~~~~~~ia~aa~~~g~~~~ 97 (118)
T 3ic5_A 75 SAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCCCCCCHHHHHHHHHHCCCEE
T ss_conf 83783045999999999099979
No 113
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=86.88 E-value=1.4 Score=23.25 Aligned_cols=58 Identities=9% Similarity=0.197 Sum_probs=43.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH---CCCCEEEEEEECCC
Q ss_conf 98669997599899999999999889899999997999999971---89989999836559
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPE 58 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~---~~~dlii~D~~mP~ 58 (122)
|+|+|||.--...+-..+++.|-+.|+.|..+..-++.++.+.+ ....+.......-+
T Consensus 20 M~kTvLVTGas~GIG~aiA~~la~~Ga~Vvl~~r~~e~l~~~~~el~~~~~~~~~~~dv~~ 80 (272)
T 2nwq_A 20 MSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRD 80 (272)
T ss_dssp -CCEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 9994999875879999999999987998999989999999999985047877999951222
No 114
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=86.70 E-value=0.67 Score=25.09 Aligned_cols=106 Identities=11% Similarity=0.033 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCC-CEEEEEC
Q ss_conf 989999999999988989999--99979999999718998999983655-----999799999999858998-5999943
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMP-----EMDGIELARRATELDPDL-KVMFITG 82 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~-pii~~s~ 82 (122)
+.....-....++..||.+.. +.+|..-++.+..-+||.|=+|..+= +-....+++.+-...... -.++..|
T Consensus 155 d~~~l~~~l~~lr~~G~~IALDDfG~g~s~l~~l~~l~pD~IKlD~sli~~~~~~~~~~~il~~Lv~la~~~g~~vIaEG 234 (431)
T 2bas_A 155 DIEQLYHMLAYYRTYGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGAALLYED 234 (431)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEEETTTBCCHHHHHHHCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 69999999988645785899989999841399998589999999989985240496689999999999998699899981
Q ss_pred CCCHHHHHHHHHCCCCE----EEECCC----CHHHHHHHHHH
Q ss_conf 79789999999769986----997697----98999999999
Q gi|254780312|r 83 FAAVALNPDSNAPKNAK----VLSKPF----HLRDLVNEVNR 116 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~----~l~KP~----~~~~L~~~i~~ 116 (122)
....+....+.+.|++. |+.||- .++.+.+++.+
T Consensus 235 VEt~~ql~~l~~lGvd~~QG~yf~~P~~~~~~~~~~~~~l~~ 276 (431)
T 2bas_A 235 IEANFQLQYAWRNGGRYFQGYYLVSPSETFLERDVLKQRLKT 276 (431)
T ss_dssp CCSHHHHHHHHHTTEEEECSTTTCCCBSSCCCTTTTHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 895999999997599896458412179850052589999999
No 115
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=84.33 E-value=2.3 Score=21.89 Aligned_cols=76 Identities=11% Similarity=0.148 Sum_probs=59.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9997599899999999999889899999997999999971--89989999836559997999999998589985999943
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~--~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
|=+-=-++...+.++..|...-|.+....++++.++.+.+ +.+||+++-..-| +-..+..++.+..--.|+|++..
T Consensus 12 I~lll~s~~Laq~c~qwL~~dRY~l~~~~s~~efle~Le~~~e~IDCLVl~~~~~--~l~~~~~qL~~~GlLLPaVvvg~ 89 (289)
T 1r8j_A 12 ICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANP--SFRAVVQQLCFEGVVVPAIVVGD 89 (289)
T ss_dssp EEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTST--THHHHHHHHHHTTCCCCEEEESC
T ss_pred EEEEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCC--CHHHHHHHHHHCCCCCCEEEECC
T ss_conf 0246388899999998677885599844878899999984745677799971587--42899999996585355799615
No 116
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=84.27 E-value=0.7 Score=25.00 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=45.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEE-ECCCCCHHHH--HHHHH-HHCCCCCEE
Q ss_conf 6699975998999999999998898999999979999999718998999983-6559997999--99999-858998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDI-VMPEMDGIEL--ARRAT-ELDPDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~-~mP~~dG~el--~~~ir-~~~~~~pii 78 (122)
+++||||...+.-.-+.++|++.|+++....+-+..++.+....+|.+++-= ..-..+-.+. ...+. ....+.|++
T Consensus 2 ~~~liiD~~dsft~Nl~~~l~~lG~~~~v~~~d~~~~~~~~~~~~~gvilsgGp~~p~~~~~~~~~~~i~~~~~~~~PiL 81 (195)
T 1qdl_B 2 DLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPIL 81 (195)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf 88999978871799999999868992799808989999998619897998899997433433443089999855899889
Q ss_pred EE-ECC
Q ss_conf 99-437
Q gi|254780312|r 79 FI-TGF 83 (122)
Q Consensus 79 ~~-s~~ 83 (122)
-+ -|+
T Consensus 82 GIClG~ 87 (195)
T 1qdl_B 82 GVCLGH 87 (195)
T ss_dssp EETHHH
T ss_pred EECHHH
T ss_conf 982607
No 117
>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1
Probab=83.27 E-value=2.5 Score=21.63 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=57.5
Q ss_pred EEEEECCCHHHHHHHHHHHHH---CC--CEEEEECCHHHH----HHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHHC
Q ss_conf 699975998999999999998---89--899999997999----9999718998999983655999--799999999858
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGK---AG--YEVVSCNNGASA----YDKVREEPFSLLLTDIVMPEMD--GIELARRATELD 72 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~---~G--~~v~~a~~g~~a----l~~~~~~~~dlii~D~~mP~~d--G~el~~~ir~~~ 72 (122)
.++++||-...+.++..+=-. .. |...--.+..+. ++.+.++.-=.+++|..||..+ |+++.+..++.
T Consensus 33 d~i~~EDtR~t~kLL~~~~i~~~~~~~s~~~~neh~~~~~~~~il~~l~~g~~valvSDAGtP~ISDPG~~LV~~a~~~- 111 (242)
T 1wyz_A 33 RHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQ- 111 (242)
T ss_dssp CEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHHHTTCCEEEECC-------CHHHHHHHHHHHT-
T ss_pred CEEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHC-
T ss_conf 9999987789999999728766775003455205567999999999997599399992689987849629999999958-
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 99859999437978999999976998
Q gi|254780312|r 73 PDLKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 73 ~~~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
+++|..+-|-+..-.+..+......
T Consensus 112 -~i~V~~iPGpSA~i~AL~~SGl~~~ 136 (242)
T 1wyz_A 112 -KLKVIPLVGPSSIILSVMASGFNGQ 136 (242)
T ss_dssp -TCCEEECCCCCHHHHHHHHHTSCSS
T ss_pred -CCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf -9679985475058789886378888
No 118
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=82.61 E-value=0.98 Score=24.11 Aligned_cols=51 Identities=6% Similarity=0.107 Sum_probs=37.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 9866999759989999999999988989999999799999997189989999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT 52 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~ 52 (122)
|.++|||||-=...-..+.+.|++.|+.++....-.. .+.+....||.||+
T Consensus 23 ~~~~I~iiDfGsq~~~lI~R~lrelgv~~eI~p~~~~-~~~i~~~~~dgIIl 73 (218)
T 2vpi_A 23 MEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETP-AFAIKEQGFRAIII 73 (218)
T ss_dssp CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCC-HHHHHHHTCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHCCCCEEEE
T ss_conf 8898999989964889999998716966999889999-89998539898999
No 119
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=82.53 E-value=2.7 Score=21.45 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=55.6
Q ss_pred HCCCEEEEECCHH------------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 8898999999979------------9999997189989999836559997999999998589985999943797899999
Q gi|254780312|r 24 KAGYEVVSCNNGA------------SAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 24 ~~G~~v~~a~~g~------------~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
+.+..|..+.+|. .++..+.++.||+++.=--=|...|-.-++++-+ ...+|.|++|.-........
T Consensus 30 RedI~vrv~gsGaKm~pe~~e~~~~~~~~~~~~~~pDf~I~isPN~~~PGP~~ARE~l~-~~~iP~IvI~D~p~~K~kd~ 108 (283)
T 1qv9_A 30 REDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLA-DSEYPAVIIGDAPGLKVKDE 108 (283)
T ss_dssp CSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHH-TSSSCEEEEEEGGGGGGHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHH
T ss_conf 36864999526777797899999988777887408998999789988999567999997-47998799827863446899
Q ss_pred HHHCCCCEEEEC
Q ss_conf 997699869976
Q gi|254780312|r 92 SNAPKNAKVLSK 103 (122)
Q Consensus 92 ~~~~g~~~~l~K 103 (122)
..+.|..++|.|
T Consensus 109 l~~~g~GYIivk 120 (283)
T 1qv9_A 109 MEEQGLGYILVK 120 (283)
T ss_dssp HHHTTCEEEEET
T ss_pred HHHCCCCEEEEE
T ss_conf 986598479983
No 120
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=82.17 E-value=2.2 Score=21.98 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=48.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEC---CHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 699975998999999999998898999999---9799999997189989999836--55999799999999858998599
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIV--MPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~---~g~~al~~~~~~~~dlii~D~~--mP~~dG~el~~~ir~~~~~~pii 78 (122)
.||+||...+.-.-+.++|++.|++|.... .....++.+....||.|++-=. -|...+ .....++....++|++
T Consensus 2 ~iliiD~~dSFt~Niv~~l~~~g~~v~V~~~~~~~~~~~~~~~~~~~dgiILsgGPg~p~~~~-~~~~~~~~~~~~iPiL 80 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAG-CMPELLTRLRGKLPII 80 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGST-THHHHHHHHBTTBCEE
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCC-CCHHHHHHHHCCCCHH
T ss_conf 399997888279999999997899079998998773679999834969699819998714331-3379999985699814
Q ss_pred EE
Q ss_conf 99
Q gi|254780312|r 79 FI 80 (122)
Q Consensus 79 ~~ 80 (122)
-+
T Consensus 81 GI 82 (192)
T 1i1q_B 81 GI 82 (192)
T ss_dssp EE
T ss_pred HH
T ss_conf 53
No 121
>3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A*
Probab=81.39 E-value=3 Score=21.24 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=52.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-----CCEE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf 66999759989999999999988-----9899-99999799999997189989999836559997-----9999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA-----GYEV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-----IELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~-----G~~v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG-----~el~~~ir~~ 71 (122)
++|-+||=|+.+-+..+..|... .=++ ....||.+.+....+..||+|++|..-|.-.+ .|+.+.+++.
T Consensus 120 ~~v~~VEID~~Vi~~~~~~~p~~~~~~~dprv~iii~D~~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~ 199 (304)
T 3bwc_A 120 EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRI 199 (304)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEECHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHH
T ss_conf 27999805889999999865443011149864899866999997463468768999089988725765429999999998
Q ss_pred CCCCCEEEE
Q ss_conf 899859999
Q gi|254780312|r 72 DPDLKVMFI 80 (122)
Q Consensus 72 ~~~~pii~~ 80 (122)
-.+--+++.
T Consensus 200 L~~~Gv~v~ 208 (304)
T 3bwc_A 200 LKPDGICCN 208 (304)
T ss_dssp EEEEEEEEE
T ss_pred HCCCCEEEE
T ss_conf 378988999
No 122
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=80.65 E-value=1.5 Score=23.03 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=51.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC---EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCE
Q ss_conf 6699975998999999999998898---999-99997999999971899899998365599979999999985-899859
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGY---EVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKV 77 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~---~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pi 77 (122)
-+|.-||-++......+..+...|+ ++. ...++.+.+..+..+.||+|++|..- .+=.+.++.+... .|. -+
T Consensus 82 g~l~tIE~~~e~~~~Ar~~~~~ag~~~~rv~~i~gda~e~L~~l~~~~fDlVfiD~~k--~~y~~~~~~~~~lLkpG-Gv 158 (221)
T 3dr5_A 82 TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSP--MDLKALVDAAWPLLRRG-GA 158 (221)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCT--TTHHHHHHHHHHHEEEE-EE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEECCCH--HHHHHHHHHHHHHCCCC-CE
T ss_conf 7899998999999999999996688762467732778998787434787779975886--77189999986325588-38
Q ss_pred EEE
Q ss_conf 999
Q gi|254780312|r 78 MFI 80 (122)
Q Consensus 78 i~~ 80 (122)
|++
T Consensus 159 iv~ 161 (221)
T 3dr5_A 159 LVL 161 (221)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 123
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=79.17 E-value=3.6 Score=20.76 Aligned_cols=79 Identities=9% Similarity=0.065 Sum_probs=48.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEEEE-E
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985-899859999-4
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVMFI-T 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii~~-s 81 (122)
.|+|||-...+-..+.+.|+..|+++....+.. .++.+....||.+++.-......--.....+++. ..+.|++-+ -
T Consensus 2 mI~iiD~g~~ft~ni~~~l~~lG~~~~i~p~~~-~~~~~~~~~~~gv~~sgg~~~~~~~~~~~~i~~~~~~~~PilGICl 80 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNVPILGICL 80 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCSCTTCCTTHHHHHHTGGGTCSCEEEETH
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEH
T ss_conf 899997998489999999997899289996999-8899983189978758998786546649999999855996899842
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 81 G~ 82 (189)
T 1wl8_A 81 GH 82 (189)
T ss_dssp HH
T ss_pred HH
T ss_conf 13
No 124
>3pfm_A Ggdef domain protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics, EAL domain; 2.91A {Pseudomonas fluorescens}
Probab=78.86 E-value=1.9 Score=22.45 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHH--CCCCCEEEEE
Q ss_conf 98999999999998898999--999979999999718998999983655-----99979999999985--8998599994
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMP-----EMDGIELARRATEL--DPDLKVMFIT 81 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~--~~~~pii~~s 81 (122)
+..... +-..|+..|+++. -+.+|...+..+.+-++|.|-+|-.+- +.+...+++.+... .-++++| .+
T Consensus 135 ~~~~~~-~l~~l~~~G~~i~idd~g~~~~~~~~l~~l~~~~vKld~~~~~~~~~~~~~~~~v~~i~~~a~~~~i~vi-a~ 212 (243)
T 3pfm_A 135 QAMLEQ-LTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLI-AE 212 (243)
T ss_dssp HHHHHH-HHHHHHHHTCEEEEEEETTTGGGGGGHHHHTCSEEEECGGGGTTTTTCTHHHHHHHHHHHHHHHTTCCEE-EC
T ss_pred CHHHHH-HHHHHHHHCCCEEEECCCCCCCCHHHHHCCCHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEE-EE
T ss_conf 167899-9999997289668712699854355542244013104399984533125678999999999998599899-98
Q ss_pred CCCCHHHHHHHHHCCCCE----EEECCCC
Q ss_conf 379789999999769986----9976979
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAK----VLSKPFH 106 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~----~l~KP~~ 106 (122)
|..+.+....+.+.|++. |+.||..
T Consensus 213 gVe~~~~~~~l~~~gi~~~QG~~~s~P~P 241 (243)
T 3pfm_A 213 RVETEGELQVIREMGLYGVQGQLFGEPAP 241 (243)
T ss_dssp CCCSHHHHHHHHHHTCSEECSGGGCCCCS
T ss_pred ECCCHHHHHHHHHCCCCEEECCEEEECCC
T ss_conf 18849999999985999988781123789
No 125
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=78.73 E-value=3.7 Score=20.68 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=53.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-----CCEE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf 66999759989999999999988-----9899-99999799999997189989999836559997-----9999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA-----GYEV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-----IELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~-----G~~v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG-----~el~~~ir~~ 71 (122)
++|-+||=|+.+.+..+.++... .=++ ....||.+.+....+..||+||+|..=|.-.. .++.+.+++.
T Consensus 145 ~~v~~VEID~~Vi~~a~~~fp~~~~~~~dprv~iii~Dg~~~l~~~~~~~yDvIIvD~~dp~~~~~~L~t~eFy~~~~~~ 224 (334)
T 1xj5_A 145 EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARA 224 (334)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHH
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHH
T ss_conf 53357505899999999753443023579987999862799975153356677999789988731433689999999975
Q ss_pred CCCCCEEEE
Q ss_conf 899859999
Q gi|254780312|r 72 DPDLKVMFI 80 (122)
Q Consensus 72 ~~~~pii~~ 80 (122)
-..--+++.
T Consensus 225 L~p~Gv~v~ 233 (334)
T 1xj5_A 225 LRPGGVVCT 233 (334)
T ss_dssp EEEEEEEEE
T ss_pred CCCCCEEEE
T ss_conf 699989999
No 126
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A*
Probab=78.69 E-value=3.7 Score=20.67 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=53.6
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---------------------------HHHHH-HHHHCCCCEEE
Q ss_conf 98-669997599899999999999889899999997---------------------------99999-99718998999
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG---------------------------ASAYD-KVREEPFSLLL 51 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g---------------------------~~al~-~~~~~~~dlii 51 (122)
|+ |||||.--.=.+-..+...|-+.||+|...... .+.+. .+....||+|+
T Consensus 1 ~~~KkilVTG~tGfIGs~lv~~Ll~~g~~V~~~dr~~~~~~~~~~~~~~~~~~~~~v~~Di~d~~~~~~~~~~~~~d~V~ 80 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
T ss_conf 97098999899878999999999978398999989997643455887432689779980367857724556237971999
Q ss_pred EEEECCCC-----C----------H-HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 98365599-----9----------7-999999998589985999943
Q gi|254780312|r 52 TDIVMPEM-----D----------G-IELARRATELDPDLKVMFITG 82 (122)
Q Consensus 52 ~D~~mP~~-----d----------G-~el~~~ir~~~~~~pii~~s~ 82 (122)
-=...+.. + | ..++++.++......+|..|+
T Consensus 81 hlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~a~~~~~~~~~~i~~Ss 127 (345)
T 2z1m_A 81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAST 127 (345)
T ss_dssp ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred ECCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 73533761677756488899999999999999998499938999813
No 127
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
Probab=77.94 E-value=1.6 Score=22.76 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=51.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-----CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHH
Q ss_conf 66999759989999999999988-----98999-99997999999971899899998365599979-----999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA-----GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~-----G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~ 71 (122)
++|-+||-|+.+.++.+..+... .-++. ...||.+.++. .+..||+|++|..-|.-.+. |+.+.+++.
T Consensus 120 ~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dpRv~i~~~Da~~~l~~-~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~ 198 (304)
T 2o07_A 120 ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTA 198 (304)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEEEEEEECC-----------CHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH-CCCCCCEEEECCCCCCCHHHHHCCHHHHHHHHHH
T ss_conf 326876046999999998555533443577248996079999974-7777888999089988635765379999999997
Q ss_pred CCCCCEEEE
Q ss_conf 899859999
Q gi|254780312|r 72 DPDLKVMFI 80 (122)
Q Consensus 72 ~~~~pii~~ 80 (122)
-.+--+++.
T Consensus 199 L~~~Gv~v~ 207 (304)
T 2o07_A 199 LKEDGVLCC 207 (304)
T ss_dssp EEEEEEEEE
T ss_pred CCCCCEEEE
T ss_conf 599989999
No 128
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=77.50 E-value=4 Score=20.46 Aligned_cols=81 Identities=7% Similarity=0.042 Sum_probs=43.5
Q ss_pred EEEECCHHHHHHHHH---HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 999999799999997---18998999983655999799999999858998599994379789999999769986997697
Q gi|254780312|r 29 VVSCNNGASAYDKVR---EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 29 v~~a~~g~~al~~~~---~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
|....+.++|....+ +.-+.+ +.+.+-.-++++.++.+++..|++ +|-.-+..+.+...++...|+. |+.-|.
T Consensus 21 vir~~~~~~a~~i~~al~~~Gi~~--iEItl~tp~a~~~i~~l~~~~p~~-~iGaGTV~~~e~~~~a~~aGa~-FivsP~ 96 (214)
T 1wbh_A 21 VIVVKKLEHAVPMAKALVAGGVRV--LNVTLRTECAVDAIRAIAKEVPEA-IVGAGTVLNPQQLAEVTEAGAQ-FAISPG 96 (214)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCE--EEEESCSTTHHHHHHHHHHHCTTS-EEEEESCCSHHHHHHHHHHTCS-CEEESS
T ss_pred EEECCCHHHHHHHHHHHHHCCCCE--EEEECCCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHCCCC-EEECCC
T ss_conf 997899999999999999879988--999379867999999999878996-7952454536899999981998-998589
Q ss_pred CHHHHHHH
Q ss_conf 98999999
Q gi|254780312|r 106 HLRDLVNE 113 (122)
Q Consensus 106 ~~~~L~~~ 113 (122)
-..++.+.
T Consensus 97 ~~~~v~~~ 104 (214)
T 1wbh_A 97 LTEPLLKA 104 (214)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
T ss_conf 99999999
No 129
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=76.58 E-value=4.2 Score=20.30 Aligned_cols=72 Identities=10% Similarity=0.164 Sum_probs=51.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCC-----CHHHHHHHHHHH-CCC
Q ss_conf 66999759989999999999988-98999-99997999999971899899998365599-----979999999985-899
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM-----DGIELARRATEL-DPD 74 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~-----dG~el~~~ir~~-~~~ 74 (122)
.+|.+||=|+.+.+..+..+.-. .-++. ...|+.+.+.......||+|++|.--+.. ...|+++.+++. .|.
T Consensus 114 ~~v~~VEidp~vi~~ar~~f~~~~~~rv~v~~~Da~~~l~~~~~~~~D~Iv~D~f~~~~~p~~l~t~ef~~~~~~~L~pg 193 (317)
T 3gjy_A 114 SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPG 193 (317)
T ss_dssp CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEE
T ss_pred CEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 86999979889999999867998899768997849999975055788779995788766763216799999999741898
No 130
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=76.57 E-value=4.2 Score=20.30 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=73.5
Q ss_pred EEEEE----CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCC--CHHHHHHHHHHHC-C
Q ss_conf 69997----59989999999999988989999---9997999999971899899998365599--9799999999858-9
Q gi|254780312|r 4 KILLA----EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMPEM--DGIELARRATELD-P 73 (122)
Q Consensus 4 rILiV----DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~mP~~--dG~el~~~ir~~~-~ 73 (122)
|||++ |-...-|..++..+...||+|.. ..+.+++.+.+.+...|++.+=..--.- -.-++++.+|+.. +
T Consensus 598 kv~la~lG~~~h~~~ra~fA~~f~~~Gf~V~~~~~f~tpee~a~aa~es~a~vv~ics~d~~y~~~vp~l~~~Lk~ag~~ 677 (727)
T 1req_A 598 RILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP 677 (727)
T ss_dssp EEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 69998178424343599999999858961754888899999999999769999999178745588999999999967998
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCH----HHHHHHHHHHH
Q ss_conf 9859999437978999999976998699769798----99999999996
Q gi|254780312|r 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL----RDLVNEVNRLL 118 (122)
Q Consensus 74 ~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~----~~L~~~i~~~l 118 (122)
+++|+ +-|..-.+......+.|+.+++..--+. .++++.+...|
T Consensus 678 ~i~Vi-lgG~iP~~d~~~L~~aGV~~if~pgtni~~~~~~~l~~~~~~~ 725 (727)
T 1req_A 678 DILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRASL 725 (727)
T ss_dssp TSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEE-EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 85799-8077887879999977988684899809999999999999874
No 131
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=76.18 E-value=4.3 Score=20.24 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=56.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889899999997--999999971899899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g--~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
..+.+||.|+...+ .++..|+.|.. .|+ .+.|+.+.-...+++++-..= +..-..++..+|+..|+++|+.-
T Consensus 28 ~~vvvID~d~~~v~----~l~~~g~~vi~-GDat~~~~L~~Agi~~A~~vIia~~d-~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 28 VKMVVLDHDPDHIE----TLRKFGMKVFY-GDATRMDLLESAGAAKAEVLINAIDD-PQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp CCEEEEECCHHHHH----HHHHTTCCCEE-SCTTCHHHHHHTTTTTCSEEEECCSS-HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCEEEEECCHHHHH----HHHHCCCCEEE-ECCCCHHHHHHCCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98899989999999----99977990999-63899999985697759999997198-89999999999997899839999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 43797899999997699869976
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~K 103 (122)
+ .+........+.|++..+.-
T Consensus 102 a--~~~~~~~~L~~~Gad~Vi~e 122 (413)
T 3l9w_A 102 A--RDVDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp E--SSHHHHHHHHHTTCSSCEET
T ss_pred E--CCHHHHHHHHHCCCCEEECC
T ss_conf 7--79999999997798999884
No 132
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=75.71 E-value=2.7 Score=21.45 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=36.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE
Q ss_conf 8669997599899999999999889899999997999999971899899998
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTD 53 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D 53 (122)
++||||+|--...-+.+++.+++.|..++....- ..++.+.+..|+-||+-
T Consensus 7 ~~kIlIlDfGsQytqLIARrvRElgVysEI~p~d-~~~eeI~~~~P~GIILS 57 (525)
T 1gpm_A 7 KHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILS 57 (525)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEEC
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEEC
T ss_conf 5908999899639999999999739848998199-99999971799999989
No 133
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=75.47 E-value=2.3 Score=21.91 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=50.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf 669997599899999999999889-----8999-9999799999997189989999836559997-----9999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG-----YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG-----IELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G-----~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG-----~el~~~ir~~ 71 (122)
++|-+||=|+.+.++.++++.... =++. ...||.+.++. ....||+|++|..=|.-.. .++.+.+++.
T Consensus 133 ~~v~~VEID~~Vi~~a~~~~~~~~~~~~dprv~i~~~Da~~~l~~-~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~ 211 (314)
T 2b2c_A 133 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDA 211 (314)
T ss_dssp CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEEEEECCC-------------HHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHCHHHCCCCCCCCEEEEECHHHHHHHC-CCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHH
T ss_conf 458999608899999976363322545666527997108999741-7888888999689987721555019999999976
Q ss_pred CCCCCEEEE
Q ss_conf 899859999
Q gi|254780312|r 72 DPDLKVMFI 80 (122)
Q Consensus 72 ~~~~pii~~ 80 (122)
-.+--+++.
T Consensus 212 L~~~Gv~v~ 220 (314)
T 2b2c_A 212 LKEDGILSS 220 (314)
T ss_dssp EEEEEEEEE
T ss_pred CCCCCEEEE
T ss_conf 499829998
No 134
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=75.44 E-value=3.2 Score=21.02 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=38.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH----HHHHHHHHHCCCCEEEEEE
Q ss_conf 98669997599899999999999889899999997----9999999718998999983
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG----ASAYDKVREEPFSLLLTDI 54 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g----~~al~~~~~~~~dlii~D~ 54 (122)
|++||||.--.=.+-..+.+.|...||+|.+.... ...++.+.....+++.-|+
T Consensus 10 mk~KIlVtGatG~iG~~l~~~Ll~~g~~V~~l~R~~~~~~~~~~~l~~~~~~~~~~d~ 67 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGEL 67 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 9983999899968999999999978697999978974236677764118818999114
No 135
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes}
Probab=74.84 E-value=0.98 Score=24.11 Aligned_cols=86 Identities=13% Similarity=0.216 Sum_probs=62.3
Q ss_pred HHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECC---CCCH---HHHHHHHHHH--CCCCCEEEEECCCCHHH
Q ss_conf 9999988989999--99979999999718998999983655---9997---9999999985--89985999943797899
Q gi|254780312|r 19 IKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMP---EMDG---IELARRATEL--DPDLKVMFITGFAAVAL 88 (122)
Q Consensus 19 ~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP---~~dG---~el~~~ir~~--~~~~pii~~s~~~~~~~ 88 (122)
-+.|+..|+++.. +.+|...++.+..-++|.+=+|..+- ..+. ..+++.+.+. .-++.+| ..|..+.+.
T Consensus 134 l~~l~~~G~~ialDdfG~g~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~v~~i~~~a~~~~~~vI-aegVEt~~~ 212 (235)
T 3kzp_A 134 IKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFV-VEGIETKET 212 (235)
T ss_dssp HHHHHHTTCEEEECSTTSTTCCHHHHHHHGGGCSEEEEEGGGGTTSCHHHHHHHHHHHHHHHHHTTCEEE-EEEECSTHH
T ss_pred HHHHHHCCCCEEECCCCCCCCCHHHHHHCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEECCCHHH
T ss_conf 9999976996885257987410778852798676141567765302311268999999999998699899-971895999
Q ss_pred HHHHHHCCCC----EEEECCC
Q ss_conf 9999976998----6997697
Q gi|254780312|r 89 NPDSNAPKNA----KVLSKPF 105 (122)
Q Consensus 89 ~~~~~~~g~~----~~l~KP~ 105 (122)
...+.+.|++ .|+.||.
T Consensus 213 ~~~l~~lGvd~~QG~~~~~P~ 233 (235)
T 3kzp_A 213 MTLLESHGVSIFQGYLVNKPF 233 (235)
T ss_dssp HHHHHHTTCCSCEEEECCCCE
T ss_pred HHHHHHCCCCEEECCEEEECC
T ss_conf 999998699996448100377
No 136
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A*
Probab=74.38 E-value=2.6 Score=21.56 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=40.7
Q ss_pred CCCEEEEECC----CH----HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-CCCCCH
Q ss_conf 9866999759----98----9999999999988989999999799999997189989999836-559997
Q gi|254780312|r 1 MNQKILLAED----DD----DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV-MPEMDG 61 (122)
Q Consensus 1 M~~rILiVDD----~~----~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~-mP~~dG 61 (122)
|++||.|+=- +. ...+.+...|.+.||++........-+..++...||.++-=+. -.+.||
T Consensus 1 m~~ki~vl~GG~S~E~~iSl~Sg~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~d~vf~~~hG~~~ed~ 70 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDG 70 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf 9850999938587312869999999999998869989998998554888864489889993468854137
No 137
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=73.99 E-value=2.5 Score=21.64 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=40.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCH
Q ss_conf 9866999759989999999999988989999999799999997189989999836559997
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG 61 (122)
|+.||+|+|=-..+...+...|+..|+++....+..+ -..+|.+|+ |+...
T Consensus 1 ~~mKi~IID~g~gN~~Sv~~~l~~lg~~~~ii~~~~~------l~~~D~iIl----PG~G~ 51 (200)
T 1ka9_H 1 MRMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKA------HEEADLLVL----PGQGH 51 (200)
T ss_dssp --CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTS------CSSCSEEEE----CCCSC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHH------HHHCCEEEE----CCCCC
T ss_conf 9977999948985899999999987998999889999------853798999----59875
No 138
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=73.66 E-value=5 Score=19.85 Aligned_cols=111 Identities=12% Similarity=0.064 Sum_probs=65.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 86699975998999999999998898999999-97999999971899899998365599979999999985899859999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCN-NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+..|.+||.++.........+...|+.+.... +-.+.|..+.=...+.++.-..= +..-...+..+|+..|++++|..
T Consensus 26 ~~~v~vId~~~e~~~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~t~~-d~~n~~~~l~~r~~~~~~~iia~ 104 (153)
T 1id1_A 26 GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN-DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC-HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99889997886778999998543898799916799999975798833899998698-79999999999997899839999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHH-HHHHHHHH
Q ss_conf 4379789999999769986997697989999-99999960
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLV-NEVNRLLT 119 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~-~~i~~~l~ 119 (122)
+.. .+........|++..+ .+..+. +.+.+.+.
T Consensus 105 ~~~--~~~~~~l~~~G~d~vi----~p~~~~a~~l~~~l~ 138 (153)
T 1id1_A 105 VSD--SKNLNKIKMVHPDIIL----SPQLFGSEILARVLN 138 (153)
T ss_dssp CSS--GGGHHHHHTTCCSEEE----CHHHHHHHHHHHHHT
T ss_pred ECC--HHHHHHHHHCCCCEEE----CHHHHHHHHHHHHHC
T ss_conf 889--8999999977989999----889999999999847
No 139
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=72.23 E-value=5.5 Score=19.65 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=24.8
Q ss_pred CCCEEEEECCCH-------HHHHHHHHHHHHCCCEEEEE
Q ss_conf 986699975998-------99999999999889899999
Q gi|254780312|r 1 MNQKILLAEDDD-------DMRRFLIKALGKAGYEVVSC 32 (122)
Q Consensus 1 M~~rILiVDD~~-------~~r~~l~~~L~~~G~~v~~a 32 (122)
|+||||||--+| ..++.....|+..|++|...
T Consensus 1 ~~KKvLII~aHP~~~S~~~al~~~~~~~l~~~G~eV~v~ 39 (273)
T 1d4a_A 1 VGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVES 39 (273)
T ss_dssp CCCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 986599998189985579999851078999789979999
No 140
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A
Probab=71.56 E-value=4.4 Score=20.23 Aligned_cols=94 Identities=9% Similarity=0.110 Sum_probs=64.0
Q ss_pred HHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECC-CCC---HHHHHHHHHH-H-CCCCCEEEEECCCCH
Q ss_conf 99999999988989999--99979999999718998999983655-999---7999999998-5-899859999437978
Q gi|254780312|r 15 RRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMP-EMD---GIELARRATE-L-DPDLKVMFITGFAAV 86 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP-~~d---G~el~~~ir~-~-~~~~pii~~s~~~~~ 86 (122)
....-..|+..||++.. +.+|...+..+.+-++|.|=+|-.+- +++ ..++++.+-. . .-.+.+ +.+|..+.
T Consensus 155 ~~~~i~~L~~~G~~ialddfg~~~~~l~~L~~l~~d~VKid~~~~~~i~~~~~~~~l~~li~~~~~~~~~v-IaegVE~~ 233 (268)
T 3hv8_A 155 AKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLS-IVPFVESA 233 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEEETCSSSTTGGGGTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEE-EECCCCSH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHEEEEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCH
T ss_conf 99988776307862665048998643233112550578784899851664336689999999999849978-99947949
Q ss_pred HHHHHHHHCCCCE----EEECCCCHHH
Q ss_conf 9999999769986----9976979899
Q gi|254780312|r 87 ALNPDSNAPKNAK----VLSKPFHLRD 109 (122)
Q Consensus 87 ~~~~~~~~~g~~~----~l~KP~~~~~ 109 (122)
+....+.+.|++. |+.||....+
T Consensus 234 ~~~~~l~~lGv~~~QG~~~~~P~~~~~ 260 (268)
T 3hv8_A 234 SVLATLWQAGATYIQGYYLQGPSQAMD 260 (268)
T ss_dssp HHHHHHHHHTCSEECSTTTCCCBSSCC
T ss_pred HHHHHHHHCCCCEEECCCCCCCCCHHH
T ss_conf 999999976999988781254798566
No 141
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17
Probab=71.46 E-value=5.4 Score=19.68 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=51.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC--C----CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCC-C-------HHHHHHH
Q ss_conf 66999759989999999999988--9----8999-99997999999971899899998365599-9-------7999999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA--G----YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM-D-------GIELARR 67 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~--G----~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~-d-------G~el~~~ 67 (122)
.+|-+||=|+.+.+..+..|... | =++. ...||.+.++. ....||+|++|..-|.. + -.|+.+.
T Consensus 102 ~~i~~VEiDp~Vi~~a~~~f~~~~~~~~~dprv~v~~~Da~~~l~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~ 180 (314)
T 1uir_A 102 EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRL 180 (314)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHH-CCCCCCEEEECCCCCCCCCCHHHHHCCHHHHHH
T ss_conf 7798740218999998751830134535687069997259999974-877678899878875457751444445999999
Q ss_pred HHHHCCCCCEEE
Q ss_conf 998589985999
Q gi|254780312|r 68 ATELDPDLKVMF 79 (122)
Q Consensus 68 ir~~~~~~pii~ 79 (122)
+++.-.+--+++
T Consensus 181 ~~~~L~~~Gvlv 192 (314)
T 1uir_A 181 VKAHLNPGGVMG 192 (314)
T ss_dssp HHHTEEEEEEEE
T ss_pred HHHHCCCCEEEE
T ss_conf 997468984999
No 142
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica}
Probab=70.70 E-value=5.9 Score=19.44 Aligned_cols=79 Identities=8% Similarity=0.054 Sum_probs=38.8
Q ss_pred EECCHHHHHHHHH---HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf 9999799999997---1899899998365599979999999985899859999437978999999976998699769798
Q gi|254780312|r 31 SCNNGASAYDKVR---EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 (122)
Q Consensus 31 ~a~~g~~al~~~~---~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~ 107 (122)
...+.+++....+ +..+.+ +.+.+..-+.++.++.+++..|++- |=.-+..+.+...++.+.|+. |+.-|...
T Consensus 20 r~~~~~~~~~i~~aL~~~Gi~~--iEitl~~~~a~~~i~~l~~~~p~~~-vGaGTV~~~~~~~~a~~aGA~-FivsP~~~ 95 (217)
T 3lab_A 20 VIDDLVHAIPMAKALVAGGVHL--LEVTLRTEAGLAAISAIKKAVPEAI-VGAGTVCTADDFQKAIDAGAQ-FIVSPGLT 95 (217)
T ss_dssp CCSCGGGHHHHHHHHHHTTCCE--EEEETTSTTHHHHHHHHHHHCTTSE-EEEECCCSHHHHHHHHHHTCS-EEEESSCC
T ss_pred ECCCHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHHHCCC-EEECCCCC
T ss_conf 6899999999999999879988--9996899069999999998689975-999962427999999972788-87768899
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780312|r 108 RDLVNE 113 (122)
Q Consensus 108 ~~L~~~ 113 (122)
.++++.
T Consensus 96 ~~v~~~ 101 (217)
T 3lab_A 96 PELIEK 101 (217)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 143
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=70.62 E-value=5.9 Score=19.43 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCEEEEECCCH-------------HHHHHHHHHHHHCCCEEEEEC
Q ss_conf 986699975998-------------999999999998898999999
Q gi|254780312|r 1 MNQKILLAEDDD-------------DMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~rILiVDD~~-------------~~r~~l~~~L~~~G~~v~~a~ 33 (122)
|+||||||=.+. .-...-...|++.||+|+.|+
T Consensus 4 M~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~iaS 49 (224)
T 1u9c_A 4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVAS 49 (224)
T ss_dssp CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 7773899975810216887563028889999999998899799994
No 144
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=70.20 E-value=6.1 Score=19.37 Aligned_cols=57 Identities=4% Similarity=-0.119 Sum_probs=24.7
Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHH
Q ss_conf 6559997999999998589985999943797899999997699869976979899999
Q gi|254780312|r 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 (122)
Q Consensus 55 ~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~ 112 (122)
.|-.-++++.++++++..|+..+|-.-+..+.+...++.+.|+. |+.-|....++.+
T Consensus 39 tl~tp~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGA~-FivsP~~~~~v~~ 95 (212)
T 2v82_A 39 PLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQ-LIVTPNIHSEVIR 95 (212)
T ss_dssp ETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCC-EEECSSCCHHHHH
T ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC-EEECCCCCHHHHH
T ss_conf 57993499999999996687507853022247889999854897-8989989989999
No 145
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=69.70 E-value=6.2 Score=19.31 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9866999759989999999999988989999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNN 34 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~ 34 (122)
|+|||||.--.=.+-..+...|-+.||+|..+..
T Consensus 13 M~k~vLITGatGfIGs~l~~~Ll~~g~~V~~i~r 46 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVA 46 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6754999758878999999999978498999989
No 146
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=69.64 E-value=4.8 Score=19.97 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=53.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC-----CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCC-----HHHHHHHHHH
Q ss_conf 866999759989999999999988-----98999-999979999999718998999983655999-----7999999998
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKA-----GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD-----GIELARRATE 70 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~-----G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~d-----G~el~~~ir~ 70 (122)
.++|-+||=|+.+.++.++.+... .=++. ...||.+.+.. ..+.||+|++|..-|.-. ..|+.+.+++
T Consensus 99 ~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dprv~i~~~Da~~~l~~-~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~ 177 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAK 177 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHH
T ss_pred CCEEEEEEECHHHHHHHHHHCHHHCCCCCCCCCEEEECHHHHHHHC-CCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHH
T ss_conf 6469999708899999998572313532387743898858998750-567767899938998872121168999999998
Q ss_pred HCCCCCEEEE
Q ss_conf 5899859999
Q gi|254780312|r 71 LDPDLKVMFI 80 (122)
Q Consensus 71 ~~~~~pii~~ 80 (122)
.-.+--+++.
T Consensus 178 ~L~~~Gv~v~ 187 (275)
T 1iy9_A 178 ALKEDGIFVA 187 (275)
T ss_dssp HEEEEEEEEE
T ss_pred HHCCCCEEEE
T ss_conf 7479979998
No 147
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=67.50 E-value=6.4 Score=19.21 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=49.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.|+++|.-+....+-+.+.|...++++...+.+.+.+ +.+|+|++= +-||. +++.++.....+|++-+..
T Consensus 30 ~r~~~v~~~~~~~kri~~~lk~~~~~~~~~~~~~~~~-----e~~DlVI~i----GGDGT-lL~a~~~~~~~~PilGIN~ 99 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-----ENFDFIVSV----GGDGT-ILRILQKLKRCPPIFGINT 99 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-----GGSSEEEEE----ECHHH-HHHHHTTCSSCCCEEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHC-----CCCCEEEEE----CCCHH-HHHHHHHHCCCCCEEEECC
T ss_conf 5899998476489999999874275589847981121-----279999998----78699-9999998279986999848
No 148
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=67.36 E-value=7 Score=19.01 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=49.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH---------------HCCCCEEEEEEECCCCCHHHH
Q ss_conf 66999759989999999999988989--99-9999799999997---------------189989999836559997999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVR---------------EEPFSLLLTDIVMPEMDGIEL 64 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~---------------~~~~dlii~D~~mP~~dG~el 64 (122)
-+|.-+|-++......+..+...|+. +. ...++.+.+..+. .++||+|++|..=+. =.+.
T Consensus 86 g~v~tie~~~~~~~~A~~~~~~ag~~~~I~~~~g~A~e~L~~L~~~~~~~~~~~~~~~~~~~fD~IFiDa~K~~--Y~~y 163 (239)
T 2hnk_A 86 GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN--YPNY 163 (239)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--HHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHH--HHHH
T ss_conf 86899945388899999999987996259999616899999988452333211001246777568999378777--5999
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q gi|254780312|r 65 ARRATEL 71 (122)
Q Consensus 65 ~~~ir~~ 71 (122)
++.+.+.
T Consensus 164 ~~~~~~l 170 (239)
T 2hnk_A 164 YPLILKL 170 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999997
No 149
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3}
Probab=65.10 E-value=7.7 Score=18.75 Aligned_cols=94 Identities=22% Similarity=0.266 Sum_probs=50.8
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986-6999759989999999999988989999999--7999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNN--GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~--g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+| ||||.+.-+. .....|++.|+++..... -++..+.+ ..+|.+++-. -|..+ +.+-+..|+++.
T Consensus 1 M~kmKILi~~~i~~---~~~~~L~~~~~~v~~~~~~~~e~l~~~l--~dad~li~~~-~~~i~-----~~~l~~~p~LK~ 69 (307)
T 1wwk_A 1 MKRMKVLVAAPLHE---KAIQVLKDAGLEVIYEEYPDEDRLVELV--KDVEAIIVRS-KPKVT-----RRVIESAPKLKV 69 (307)
T ss_dssp ---CEEEECSCCCH---HHHHHHHHTTCEEEECSSCCHHHHHHHS--TTCSEEEESS-CSCBC-----HHHHTTCTTCCE
T ss_pred CCCCEEEEECCCCH---HHHHHHHHCCCEEEECCCCCHHHHHHHH--CCCCEEEEEC-CCCCC-----HHHHHCCCCCEE
T ss_conf 99888999689999---9999998679989978999999999985--8994999938-99879-----999942999879
Q ss_pred EEEECCCCHHH-HHHHHHCCCCEEEECCC
Q ss_conf 99943797899-99999769986997697
Q gi|254780312|r 78 MFITGFAAVAL-NPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 78 i~~s~~~~~~~-~~~~~~~g~~~~l~KP~ 105 (122)
|...+-+-... ...+.+.++.-.-....
T Consensus 70 I~~~~aG~d~id~~~~~~~~I~v~n~~g~ 98 (307)
T 1wwk_A 70 IARAGVGLDNIDVEAAKEKGIEVVNAPAA 98 (307)
T ss_dssp EEESSSCCTTBCHHHHHHHTCEEECCGGG
T ss_pred EEECCCCCCCCCHHHHHHCCCEEECCCCC
T ss_conf 99888526751789897339467458985
No 150
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=63.64 E-value=7.3 Score=18.89 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=22.3
Q ss_pred HHHHHHHHHHH--CCCEEE--EECCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999999998--898999--9999799999997189989999836
Q gi|254780312|r 14 MRRFLIKALGK--AGYEVV--SCNNGASAYDKVREEPFSLLLTDIV 55 (122)
Q Consensus 14 ~r~~l~~~L~~--~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~ 55 (122)
+|+.+-..|+. .|..+. -|.+|.-|++++..+.-.++++|..
T Consensus 40 vrealFn~l~~~~~~~~~LDLFaGSG~lglEAlSRGA~~v~fVE~~ 85 (201)
T 2ift_A 40 VKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD 85 (201)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEEC
T ss_conf 9999999877642998799878882898999998899399999740
No 151
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp}
Probab=63.51 E-value=8.3 Score=18.57 Aligned_cols=82 Identities=12% Similarity=0.236 Sum_probs=54.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHH----HHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCC
Q ss_conf 98669997599899999999999889899999-99799999----9971899899998365599979-999999985899
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYD----KVREEPFSLLLTDIVMPEMDGI-ELARRATELDPD 74 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g~~al~----~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~ 74 (122)
|+|.+||.--...+-..+...|.+.|+.|... .+.++.++ .+.+....+...-..+-+.+.. ++++.+.+....
T Consensus 3 M~K~alITGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 82 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS 82 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98789992688689999999999879989997189989999999999954996899981389999999999999998299
Q ss_pred CCEEEEEC
Q ss_conf 85999943
Q gi|254780312|r 75 LKVMFITG 82 (122)
Q Consensus 75 ~pii~~s~ 82 (122)
+-+++-.+
T Consensus 83 iDiLVnnA 90 (246)
T 3osu_A 83 LDVLVNNA 90 (246)
T ss_dssp CCEEEECC
T ss_pred CCEEEECC
T ss_conf 87999889
No 152
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=62.25 E-value=8.7 Score=18.43 Aligned_cols=97 Identities=11% Similarity=-0.025 Sum_probs=68.6
Q ss_pred HHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99999998898999--9999799999997189989999836559997-----9999999985899859999437978999
Q gi|254780312|r 17 FLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDG-----IELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 17 ~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP~~dG-----~el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
-..+.|-+.||.|. +..|..-|-++..-+. ..+|=+.=|--+| ...++.|++. +++|+|+=-|.+.....
T Consensus 117 ~Aae~Lv~eGF~VlpY~~~D~v~akrLed~Gc--~avMPlgsPIGSg~Gl~n~~~l~~i~e~-~~vPvIVDAGIG~pSdA 193 (264)
T 1xm3_A 117 KASEQLLEEGFIVLPYTSDDVVLARKLEELGV--HAIMPGASPIGSGQGILNPLNLSFIIEQ-AKVPVIVDAGIGSPKDA 193 (264)
T ss_dssp HHHHHHHHTTCCEEEEECSCHHHHHHHHHHTC--SCBEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCHHHHHHHHHC-CCCCEEEECCCCCHHHH
T ss_conf 99999997898799960789899999997699--1998513401368776798999999966-89888984798988899
Q ss_pred HHHHHCCCCEEEEC-----CCCHHHHHHHHHH
Q ss_conf 99997699869976-----9798999999999
Q gi|254780312|r 90 PDSNAPKNAKVLSK-----PFHLRDLVNEVNR 116 (122)
Q Consensus 90 ~~~~~~g~~~~l~K-----P~~~~~L~~~i~~ 116 (122)
.++++.|+++.|.- --+|-...++++.
T Consensus 194 a~AMElG~DaVLvNTAIA~A~dPv~MA~A~~~ 225 (264)
T 1xm3_A 194 AYAMELGADGVLLNTAVSGADDPVKMARAMKL 225 (264)
T ss_dssp HHHHHTTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
T ss_conf 99997458899855465628998999999999
No 153
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=61.91 E-value=8.8 Score=18.39 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEEEEC-CCCCHH-HHHHHHHHHCCCCCEEEEECC
Q ss_conf 59989999999999988989999--9-997999999971899899998365-599979-999999985899859999437
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVS--C-NNGASAYDKVREEPFSLLLTDIVM-PEMDGI-ELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~--a-~~g~~al~~~~~~~~dlii~D~~m-P~~dG~-el~~~ir~~~~~~pii~~s~~ 83 (122)
|-+..=-+++..+|+..||+|.- . ...++.++.+.++.+|+|-+-.-| |.+... ++++.+++...++||++==+.
T Consensus 109 D~HdIGKniV~~~l~~~G~~VidLG~~v~~~~~v~~~~~~~~d~iglS~llt~s~~~m~~~~~~l~~~g~~~~v~vGGa~ 188 (579)
T 3bul_A 109 DVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGAT 188 (579)
T ss_dssp CCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 60156789999999709907994577889999999999849978999533477799999999999972898717832640
Q ss_pred CCHHHH
Q ss_conf 978999
Q gi|254780312|r 84 AAVALN 89 (122)
Q Consensus 84 ~~~~~~ 89 (122)
......
T Consensus 189 ~t~~~~ 194 (579)
T 3bul_A 189 TSKAHT 194 (579)
T ss_dssp CCHHHH
T ss_pred CCHHHH
T ss_conf 567887
No 154
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=61.56 E-value=9 Score=18.35 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=43.5
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-------HHHH-HHHHHCCCCEEEEEEEC
Q ss_conf 98-669997599899999999999889899999997-------9999-99971899899998365
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-------ASAY-DKVREEPFSLLLTDIVM 56 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g-------~~al-~~~~~~~~dlii~D~~m 56 (122)
|+ |||||.--.=.+-..+...|.+.|+.+....+. .+.+ +.+....+|.|+.-...
T Consensus 1 m~~KkIlITG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~d~~d~~~v~~~~~~~~~D~v~h~a~~ 65 (321)
T 1e6u_A 1 MAKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAK 65 (321)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHHCCCCEEEECHHH
T ss_conf 99886999848748999999999978498999657104263689999999864699899986024
No 155
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=61.46 E-value=9 Score=18.34 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=55.4
Q ss_pred HHHHHHCCCEEE-EECCHHHHHHHHH---HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 999998898999-9999799999997---189989999836559997999999998589985999943797899999997
Q gi|254780312|r 19 IKALGKAGYEVV-SCNNGASAYDKVR---EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNA 94 (122)
Q Consensus 19 ~~~L~~~G~~v~-~a~~g~~al~~~~---~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~ 94 (122)
-..|...+.-.. ...+..++....+ +..+.+ +.+.|-.-+.++.++.+++..|++- +=.-+.-+.+...++..
T Consensus 11 ~~~l~~~~iipvlr~~~~~~~~~~~~al~~~Gi~~--iEITl~t~~a~~~i~~l~~~~p~~~-vGaGTVl~~~~~~~a~~ 87 (224)
T 1vhc_A 11 IEKLRELKIVPVIALDNADDILPLADTLAKNGLSV--AEITFRSEAAADAIRLLRANRPDFL-IAAGTVLTAEQVVLAKS 87 (224)
T ss_dssp HHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCE--EEEETTSTTHHHHHHHHHHHCTTCE-EEEESCCSHHHHHHHHH
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHHHH
T ss_conf 99999789799996899999999999999879988--9996898039999999998689918-96202045799999998
Q ss_pred CCCCEEEECCCCHHHHHHHHH
Q ss_conf 699869976979899999999
Q gi|254780312|r 95 PKNAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 95 ~g~~~~l~KP~~~~~L~~~i~ 115 (122)
.|+. |+.-|.-..++.+..+
T Consensus 88 aGA~-FivSP~~~~~v~~~a~ 107 (224)
T 1vhc_A 88 SGAD-FVVTPGLNPKIVKLCQ 107 (224)
T ss_dssp HTCS-EEECSSCCHHHHHHHH
T ss_pred HCCC-EEECCCCCHHHHHHHH
T ss_conf 3799-8972789999999998
No 156
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=61.32 E-value=9.1 Score=18.33 Aligned_cols=103 Identities=13% Similarity=0.031 Sum_probs=56.5
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 986-69997599899999999999889899999997-9999999718998999983655999799999999858998599
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g-~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii 78 (122)
|++ ||=||--.-.....+...+...|+++..+.+. .+..+.+.+.-+ ....++-.+.+-+ .+++-.|
T Consensus 2 MkkirigiiG~g~~~~~~~~~~~~~~~~elvav~d~~~~~~~~~~~~~~----------~~~~~~~~~ell~-~~~iDaV 70 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFP----------SVPFAASAEQLIT-DASIDLI 70 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHST----------TCCBCSCHHHHHT-CTTCCEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCC----------CCCEECCHHHHHC-CCCCCEE
T ss_conf 9605699993688999999988650897899998999999999998779----------9837899999955-9998999
Q ss_pred EEECCC--CHHHHHHHHHCCCCEEEECCC--CHHHHHHHH
Q ss_conf 994379--789999999769986997697--989999999
Q gi|254780312|r 79 FITGFA--AVALNPDSNAPKNAKVLSKPF--HLRDLVNEV 114 (122)
Q Consensus 79 ~~s~~~--~~~~~~~~~~~g~~~~l~KP~--~~~~L~~~i 114 (122)
++++-. ..+...++.+.|..-|+.||+ +.++..+-+
T Consensus 71 ~I~tp~~~H~~~~~~al~~gk~Vl~EKPla~s~~e~~~l~ 110 (336)
T 2p2s_A 71 ACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQ 110 (336)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHH
T ss_conf 9968827789999999985990896278532232004689
No 157
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=61.21 E-value=9.1 Score=18.32 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=62.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889899999997--999999971899899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g--~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
..+++||.|+..... ++..|+.+.. .|+ .+.|+.+.=+..+.++.-.. .+..-..++..+|+..|+++++.-
T Consensus 31 ~~vvvId~d~~~~~~----~~~~g~~~i~-GD~~~~~~L~~a~i~~a~~vi~~~~-~d~~n~~~~~~~r~l~p~~~iiar 104 (140)
T 3fwz_A 31 IPLVVIETSRTRVDE----LRERGVRAVL-GNAANEEIMQLAHLECAKWLILTIP-NGYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp CCEEEEESCHHHHHH----HHHTTCEEEE-SCTTSHHHHHHTTGGGCSEEEECCS-CHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CCEEEEECCCHHHHH----HHHCCCEEEE-CCCCCHHHHHHHCHHHHCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 978999888077501----5653965885-1589999999727445189999879-889999999999997899849999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 43797899999997699869976979899999999996
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
+ .+.+......+.|++.++.- .......+.+.|
T Consensus 105 ~--~~~~~~~~l~~~G~~~vi~~---~~~~a~~l~~~l 137 (140)
T 3fwz_A 105 A--HYDDEVAYITERGANQVVMG---EREIARTMLELL 137 (140)
T ss_dssp E--SSHHHHHHHHHTTCSEEEEH---HHHHHHHHHHHH
T ss_pred E--CCHHHHHHHHHCCCCEEECH---HHHHHHHHHHHH
T ss_conf 8--79999999997798999988---999999999974
No 158
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA; 2.00A {Aquifex aeolicus VF5}
Probab=60.80 E-value=9.2 Score=18.27 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=39.5
Q ss_pred HHHHHHCCCCEEEEEEEC--CCCCH--------------------HHHHHHHHHHCCCCCEEEEECC------CCHHHHH
Q ss_conf 999971899899998365--59997--------------------9999999985899859999437------9789999
Q gi|254780312|r 39 YDKVREEPFSLLLTDIVM--PEMDG--------------------IELARRATELDPDLKVMFITGF------AAVALNP 90 (122)
Q Consensus 39 l~~~~~~~~dlii~D~~m--P~~dG--------------------~el~~~ir~~~~~~pii~~s~~------~~~~~~~ 90 (122)
+..+.+...|+|-+.+-. |-.|| +++++++|+..+++|+++++-+ +-.....
T Consensus 37 ~~~l~~~G~d~iElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~ 116 (262)
T 2ekc_A 37 FKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCR 116 (262)
T ss_dssp HHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCHHHHHH
T ss_conf 99999769999997899998654489999999999978997777665433310237887889995043440067899999
Q ss_pred HHHHCCCCEEEECCCCH
Q ss_conf 99976998699769798
Q gi|254780312|r 91 DSNAPKNAKVLSKPFHL 107 (122)
Q Consensus 91 ~~~~~g~~~~l~KP~~~ 107 (122)
++.+.|+++.|.=....
T Consensus 117 ~~~~~Gv~gviipDlp~ 133 (262)
T 2ekc_A 117 LSREKGIDGFIVPDLPP 133 (262)
T ss_dssp HHHHTTCCEEECTTCCH
T ss_pred HHHHCCCCEEECCCCCH
T ss_conf 99976975786158866
No 159
>2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A*
Probab=59.97 E-value=9.6 Score=18.18 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=52.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCC-----HHHHHHHHHHH
Q ss_conf 669997599899999999999889-----8999-999979999999718998999983655999-----79999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG-----YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD-----GIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G-----~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~d-----G~el~~~ir~~ 71 (122)
++|-+||=|+.+.++.+..+...+ =++. ...||.+.++.. ...||+|++|..=|.-. ..|+.+.+++.
T Consensus 103 ~~i~~VEiD~~Vi~~a~~~f~~~~~~~~d~rv~v~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~ 181 (283)
T 2i7c_A 103 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNA 181 (283)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHH
T ss_conf 3799974789999999987465024224876528960689999746-887777999479988742655489999999876
Q ss_pred CCCCCEEEE
Q ss_conf 899859999
Q gi|254780312|r 72 DPDLKVMFI 80 (122)
Q Consensus 72 ~~~~pii~~ 80 (122)
-.+--+++.
T Consensus 182 L~~~Gi~v~ 190 (283)
T 2i7c_A 182 LKPNGYCVA 190 (283)
T ss_dssp EEEEEEEEE
T ss_pred CCCCCEEEE
T ss_conf 189968999
No 160
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=59.69 E-value=9.7 Score=18.15 Aligned_cols=96 Identities=6% Similarity=0.060 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-CCCH---HHHHHHHHHH--CCCCCEEEEECC
Q ss_conf 8999999999998898999--999979999999718998999983655-9997---9999999985--899859999437
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMP-EMDG---IELARRATEL--DPDLKVMFITGF 83 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG---~el~~~ir~~--~~~~pii~~s~~ 83 (122)
.....-....|+..||++. -+.+|...+..+.+-++|.|-+|-.+- +++. .++++.+-.. ...+.+| ..|.
T Consensus 321 ~~~~~~~~~~l~~~G~~iaiddfG~~~~s~~~L~~l~~d~iKid~~~i~~i~~~~~~~~l~~~i~~a~~~~~~vi-aegV 399 (437)
T 3hvb_A 321 LKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSI-VPFV 399 (437)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETCSSSHHHHHTTSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEEE-ECCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEE-EECC
T ss_conf 243224555664168779986799884128999838999999898999502887378999999999998599589-9578
Q ss_pred CCHHHHHHHHHCCCCE----EEECCCCHH
Q ss_conf 9789999999769986----997697989
Q gi|254780312|r 84 AAVALNPDSNAPKNAK----VLSKPFHLR 108 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~----~l~KP~~~~ 108 (122)
.+.+......+.|++. |+.||....
T Consensus 400 e~~~~~~~l~~~gid~~QG~~~~~P~~~~ 428 (437)
T 3hvb_A 400 ESASVLATLWQAGATYIQGYYLQGPSQAM 428 (437)
T ss_dssp CSHHHHHHHHHHTCSEEECTTTCCCBSSC
T ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCHH
T ss_conf 93999999997699999878004369867
No 161
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=59.64 E-value=9.7 Score=18.15 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 986699975998999999999998898999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
|+|||||.--.=.+...+...|-+.||+|....
T Consensus 1 M~kKILITG~sGfiGs~l~~~Ll~~g~~V~~~d 33 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVID 33 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 997099978972899999999997859899997
No 162
>2g4r_A MOGA, molybdopterin biosynthesis MOG protein; anomalous substructure of MOGA, biosynthetic protein; 1.92A {Mycobacterium tuberculosis} PDB: 3oi9_A
Probab=58.49 E-value=10 Score=18.03 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=37.7
Q ss_pred EEEEECC-------CHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHH---HCCCCEEEEEEEC
Q ss_conf 6999759-------98999999999998898999---9999799999997---1899899998365
Q gi|254780312|r 4 KILLAED-------DDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVR---EEPFSLLLTDIVM 56 (122)
Q Consensus 4 rILiVDD-------~~~~r~~l~~~L~~~G~~v~---~a~~g~~al~~~~---~~~~dlii~D~~m 56 (122)
.|++|-| ...+...++..|++.||+|. .+.|-.+.+..+. ...+|+||+-=..
T Consensus 7 ~Iitvsd~~~~G~~~D~ngp~l~~~L~~~G~~v~~~~iv~D~~~~~~~~~~~~~~~~DlVittGG~ 72 (160)
T 2g4r_A 7 RIVVVSSRAAAGVYTDDCGPIIAGWLEQHGFSSVQPQVVADGNPVGEALHDAVNAGVDVIITSGGT 72 (160)
T ss_dssp EEEEECHHHHTTSSCCCHHHHHHHHHHHTTCCCCCCEEECSSHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCE
T ss_conf 999967833058868870999999998779964798867957999999999986699999974753
No 163
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A*
Probab=58.36 E-value=9.1 Score=18.30 Aligned_cols=60 Identities=15% Similarity=0.001 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE------EEC-CCCHHHHHHHHHHHHHCC
Q ss_conf 999999998589985999943797899999997699869------976-979899999999996036
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV------LSK-PFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~------l~K-P~~~~~L~~~i~~~l~~~ 121 (122)
.+.+.++++..++.|||-.-|..+.+...+.+..|++.+ +.+ |--..++.+.+.+.|+.+
T Consensus 232 l~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~I~~~L~~~l~~~ 298 (314)
T 2e6f_A 232 LANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARK 298 (314)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999986698459971785899999999983988404305567409199999999999999984
No 164
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=58.20 E-value=10 Score=18.00 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=41.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEEEEECCCCCH---------HHHHHHHHHHC
Q ss_conf 9997599899999999999889899999---99799999997189989999836559997---------99999999858
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSC---NNGASAYDKVREEPFSLLLTDIVMPEMDG---------IELARRATELD 72 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a---~~g~~al~~~~~~~~dlii~D~~mP~~dG---------~el~~~ir~~~ 72 (122)
++++|--..-..-+...+...|...... .+..+-+..+.+.....|-+ +.+++..| .+.++++|+.
T Consensus 126 liipDlp~ee~~~~~~~~~~~~l~~I~lvaPtt~~~ri~~i~~~s~gFiY~-vs~~GvTG~~~~~~~~~~~~i~~ik~~- 203 (268)
T 1qop_A 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYL-LSRSGVTGAENRGALPLHHLIEKLKEY- 203 (268)
T ss_dssp EEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEE-ESSSSCCCSSSCC--CCHHHHHHHHHT-
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE-EECCCCCCCCCCCCHHHHHHHHHHHHC-
T ss_conf 651588856669999999735982699982689778899987259864787-103467876543105689999999754-
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 998599994379789999999769986997
Q gi|254780312|r 73 PDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 73 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
.++|+++==|.+..+...+..+.++++.+.
T Consensus 204 t~~Pv~vGFGI~~~e~v~~~~~~~ADGvVV 233 (268)
T 1qop_A 204 HAAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp TCCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 688835761569999999998638998998
No 165
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=58.18 E-value=10 Score=18.00 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCE-EEEECCHHHHHHHHH---HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 9999999988989-999999799999997---189989999836559997999999998589985999943797899999
Q gi|254780312|r 16 RFLIKALGKAGYE-VVSCNNGASAYDKVR---EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 16 ~~l~~~L~~~G~~-v~~a~~g~~al~~~~---~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
..+...++....- |....+.+++....+ +.-+. ++.+.+-.-+.++.++.+++..|++- |=.-+..+.+...+
T Consensus 17 ~~i~~i~~~~~iipvi~~~~~~~a~~~a~al~~~Gi~--~iEitl~tp~a~e~i~~l~~~~p~~~-iGaGTV~~~~~~~~ 93 (225)
T 1mxs_A 17 ARIDAICEKARILPVITIAREEDILPLADALAAGGIR--TLEVTLRSQHGLKAIQVLREQRPELC-VGAGTVLDRSMFAA 93 (225)
T ss_dssp HHHHHHHHHHSEEEEECCSCGGGHHHHHHHHHHTTCC--EEEEESSSTHHHHHHHHHHHHCTTSE-EEEECCCSHHHHHH
T ss_pred HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHH
T ss_conf 9999999869878999759999999999999987998--89995899409999999997499707-86530367999999
Q ss_pred HHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 997699869976979899999999
Q gi|254780312|r 92 SNAPKNAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 92 ~~~~g~~~~l~KP~~~~~L~~~i~ 115 (122)
+...|+. |+.-|....++.+..+
T Consensus 94 a~~aGa~-FivsP~~~~~v~~~a~ 116 (225)
T 1mxs_A 94 VEAAGAQ-FVVTPGITEDILEAGV 116 (225)
T ss_dssp HHHHTCS-SEECSSCCHHHHHHHH
T ss_pred HHHCCCC-EEECCCCCHHHHHHHH
T ss_conf 9977998-9988989599999998
No 166
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=57.42 E-value=11 Score=17.92 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=67.4
Q ss_pred CEEEE-ECCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999-75998---9999999999988989999-------9997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILL-AEDDD---DMRRFLIKALGKAGYEVVS-------CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILi-VDD~~---~~r~~l~~~L~~~G~~v~~-------a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+++.+ ..|+. .....+...++..|+++.. ..+-...++.+.+..+|+|++-..- .++..+++++++.
T Consensus 140 k~~~i~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~--~~~~~~~~~~~~~ 217 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAY--EDAAPFLRALRAR 217 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCH--HHHHHHHHHHHHT
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCH--HHHHHHHHHHHHC
T ss_conf 15999605771769999999977875398799999707986467999999985698999996770--8999999999974
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 8998599994379789999999769986997697
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
..+.+++..++..+......+.......|..-|+
T Consensus 218 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (358)
T 3hut_A 218 GSALPVYGSSALYSPKFIDLGGPAVEGVRLATAF 251 (358)
T ss_dssp TCCCCEEECGGGCSHHHHHHHGGGGTTCEEEESC
T ss_pred CCCCCEEEECCCCCHHHHHHCCCCCCCCEEECCC
T ss_conf 9999768641457777775224011584662135
No 167
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=57.07 E-value=11 Score=17.89 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=40.7
Q ss_pred CEEEEECCCHH-----HHHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 66999759989-----99999999998898999999---------97999999971899899998365599979999999
Q gi|254780312|r 3 QKILLAEDDDD-----MRRFLIKALGKAGYEVVSCN---------NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 (122)
Q Consensus 3 ~rILiVDD~~~-----~r~~l~~~L~~~G~~v~~a~---------~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~i 68 (122)
+|+|+|=|+.. ..+-+...|...|+.+.... +..++.+.+++..+|+|+- + -+-+-.++++.+
T Consensus 41 ~r~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~Iva-v--GGGs~iD~aK~v 117 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVG-L--GGGSPMDFAKAV 117 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEE-E--ESHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE-E--CCCCCCHHHHHH
T ss_conf 9589997686888735999999999876985999688668979999999999998549988998-2--897612089999
Q ss_pred H
Q ss_conf 9
Q gi|254780312|r 69 T 69 (122)
Q Consensus 69 r 69 (122)
.
T Consensus 118 a 118 (371)
T 1o2d_A 118 A 118 (371)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 168
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=56.90 E-value=11 Score=17.87 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=51.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----HCCCCEEEEEEECCCCCHHHHHHHHHH-HCC
Q ss_conf 66999759989999999999988989--99-9999799999997-----189989999836559997999999998-589
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVR-----EEPFSLLLTDIVMPEMDGIELARRATE-LDP 73 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~-----~~~~dlii~D~~mP~~dG~el~~~ir~-~~~ 73 (122)
-+|.-+|-|+.........++..|+. +. ...++.+.+..+- ...||+|++|..=.. =.+..+.+.. ..|
T Consensus 105 g~l~tie~~~~~~~~Ar~~~~~ag~~~kI~~~~g~A~e~L~~l~~~~~~~~~fDfIFIDadK~~--Y~~y~e~~~~LLr~ 182 (247)
T 1sui_A 105 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDN--YLNYHKRLIDLVKV 182 (247)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTT--HHHHHHHHHHHBCT
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEEECCCHHH--HHHHHHHHHHHCCC
T ss_conf 3699985177878999999986201450589944289999999853134776447996388888--89999999734479
Q ss_pred CCCEEE
Q ss_conf 985999
Q gi|254780312|r 74 DLKVMF 79 (122)
Q Consensus 74 ~~pii~ 79 (122)
.--+++
T Consensus 183 GGvIv~ 188 (247)
T 1sui_A 183 GGVIGY 188 (247)
T ss_dssp TCCEEE
T ss_pred CEEEEE
T ss_conf 819998
No 169
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling protein; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*
Probab=56.40 E-value=3.4 Score=20.87 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEEC-CCC--C--HHHHHHHHHHHCC--CCCEEEE
Q ss_conf 998999999999998898999--99997999999971899899998365-599--9--7999999998589--9859999
Q gi|254780312|r 10 DDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVM-PEM--D--GIELARRATELDP--DLKVMFI 80 (122)
Q Consensus 10 D~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~m-P~~--d--G~el~~~ir~~~~--~~pii~~ 80 (122)
+.+.... .-..|...|+.+. -+.+|...+..+..-+||.|=+|-.+ -+. + ...+++.+-+... .+.+ +.
T Consensus 289 ~~~~~~~-~l~~Lr~~G~~ialDDFG~g~ssl~~L~~l~~d~IKID~~~v~~i~~~~~~~~~v~~iv~la~~lgi~v-IA 366 (413)
T 3gfz_A 289 CFDQFRK-VLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITV-VA 366 (413)
T ss_dssp CSTTHHH-HHHHHHHHTCEEEEEEETSSSCSHHHHTTCCCSEEEECHHHHTTTTTBHHHHHHHHHHHHHHHHHTCEE-EE
T ss_pred HHHHHHH-HHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEE-EE
T ss_conf 5788988-877553158743544778870358999857999899878997320359557999999999999849989-99
Q ss_pred ECCCCHHHHHHHHHCCCCE----EEECCC
Q ss_conf 4379789999999769986----997697
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAK----VLSKPF 105 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~----~l~KP~ 105 (122)
.|..+.+....+...|++. |+.||.
T Consensus 367 EGVEt~~~~~~l~~lGvd~~QGy~f~kP~ 395 (413)
T 3gfz_A 367 EGVETLEEWCWLQSVGIRLFQGFLFSRPC 395 (413)
T ss_dssp ECCCSHHHHHHHHHTTCCEEESTTTCCCE
T ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 81892999999997699995227025229
No 170
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2
Probab=56.25 E-value=11 Score=17.80 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=44.6
Q ss_pred CEEEEECCCHHHH-----HHHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 6699975998999-----9999999988989999999---------7999999971899899998365599979999999
Q gi|254780312|r 3 QKILLAEDDDDMR-----RFLIKALGKAGYEVVSCNN---------GASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 (122)
Q Consensus 3 ~rILiVDD~~~~r-----~~l~~~L~~~G~~v~~a~~---------g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~i 68 (122)
+|+|||=|..... +-+...|+..|+.+..+.+ ..++.+.+++..+|+||- .-+-+-+++++.+
T Consensus 44 kkvliVt~~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~IIa---vGGGS~iD~AKai 120 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLG---VGGGSVVDSAKAV 120 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEE---EESHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---CCCCCHHHHHHHH
T ss_conf 8589998875788752999999999865993999857079999999999999997459978995---4996341568889
Q ss_pred H
Q ss_conf 9
Q gi|254780312|r 69 T 69 (122)
Q Consensus 69 r 69 (122)
.
T Consensus 121 a 121 (407)
T 1vlj_A 121 A 121 (407)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 171
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Probab=55.78 E-value=11 Score=17.76 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHCCC-CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 97999999971899-89999836559997999999998
Q gi|254780312|r 34 NGASAYDKVREEPF-SLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 34 ~g~~al~~~~~~~~-dlii~D~~mP~~dG~el~~~ir~ 70 (122)
.|.+.++.+++..+ -.++.|+.+-+. |..+.+...+
T Consensus 45 ~G~~~i~~l~~~~~~~~i~~D~K~~Di-~~~~~~~~~~ 81 (218)
T 3jr2_A 45 EGMKAVSTLRHNHPNHILVCDMKTTDG-GAILSRMAFE 81 (218)
T ss_dssp HTTHHHHHHHHHCTTSEEEEEEEECSC-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHH
T ss_conf 599999999975789739999851457-2778899887
No 172
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=55.45 E-value=11 Score=17.72 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=48.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH----HCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 66999759989999999999988989--99-9999799999997----189989999836559997999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVR----EEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~----~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
-+|.-+|-++......+..++..|+. +. ...++.+.+..+. ..+||+|++|..-... .+.++.+.+
T Consensus 95 g~v~tie~~~~~~~~Ar~~~~~ag~~~~i~~~~g~a~e~l~~l~~~~~~~~fD~iFiDa~k~~y--~~~~~~~~~ 167 (229)
T 2avd_A 95 GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENC--SAYYERCLQ 167 (229)
T ss_dssp CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTH--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCCCCEEEEECCCHHHH--HHHHHHHHH
T ss_conf 7899995746599999999997699885699995004567777641357772189943887777--999999996
No 173
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: c.66.1.46
Probab=55.34 E-value=11 Score=17.71 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=41.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHH--HHCCCCEEEEEEECC-CCCHHHHHHHHHH
Q ss_conf 66999759989999999999988989999-99979999999--718998999983655-9997999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKV--REEPFSLLLTDIVMP-EMDGIELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~--~~~~~dlii~D~~mP-~~dG~el~~~ir~ 70 (122)
.++..||-|+...+.+++-++..|+.... ..++...+... ...+||+|++| -| +.+-.+++..+.+
T Consensus 64 a~vv~vD~~~~ai~~~~~N~~~~g~~~~v~~~~~d~~~~~~~~~~~~fDlI~~D--PPY~~~~~~~~~~l~~ 133 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA--PPYAMDLAALFGELLA 133 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC--CCTTSCTTHHHHHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCEEEEEEC--CCCCCCHHHHHHHHHH
T ss_conf 953006068789999998788606655599977898755555338855799987--9988676999999998
No 174
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=54.80 E-value=12 Score=17.66 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=49.8
Q ss_pred CEEEEECCCHH----HHHHHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 66999759989----999999999988989999999---------79999999718998999983655999799999999
Q gi|254780312|r 3 QKILLAEDDDD----MRRFLIKALGKAGYEVVSCNN---------GASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 3 ~rILiVDD~~~----~r~~l~~~L~~~G~~v~~a~~---------g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+|+|||-|... ..+-+...|...|.++..... ..++.+..++..+|+||- .-+-+-++.++.+.
T Consensus 32 k~vlvv~~~~~~~~g~~~~i~~~L~~~gi~~~vf~~v~~~pt~~~v~~~~~~~~~~~~D~Iia---vGGGs~iD~aK~va 108 (386)
T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIA---IGGGSPQDTCKAIG 108 (386)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEE---EESHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE---CCCCCCCHHHHHHH
T ss_conf 879999897756582799999999875983999878479979999999865550358887997---68864104899999
Q ss_pred H-------------------HCCCCCEEEEECC
Q ss_conf 8-------------------5899859999437
Q gi|254780312|r 70 E-------------------LDPDLKVMFITGF 83 (122)
Q Consensus 70 ~-------------------~~~~~pii~~s~~ 83 (122)
- ..+.+|+|.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~lP~i~VPTt 141 (386)
T 1rrm_A 109 IISNNPEFADVRSLEGLSPTNKPSVPILAIPTT 141 (386)
T ss_dssp HHHHCGGGTTSGGGSEECCCCSCCSCEEEEECS
T ss_pred HHHCCCCCCHHHHHHCCCCCCCCCCCEEEECCC
T ss_conf 985386432034430356555787757960476
No 175
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=54.02 E-value=12 Score=17.58 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=50.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHH----CCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999759989999999999988989--99-99997999999971----899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVRE----EPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~~----~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
-+|.-+|-++......+..+...|+. +. ...++.+.+..+.. .+||+|++|..-. +-.+.++.+...
T Consensus 98 g~v~tiE~~~~~~~~A~~~~~~ag~~~~i~~~~g~a~e~l~~l~~~~~~~~fD~iFiDadK~--~y~~y~~~~~~l 171 (232)
T 3cbg_A 98 GQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR--NYPRYYEIGLNL 171 (232)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG--GHHHHHHHHHHT
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEECCHH--HHHHHHHHHHHH
T ss_conf 58999976741489999999986998628999625899999997325677601899608888--899999999998
No 176
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=53.67 E-value=12 Score=17.55 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=60.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH-CCCEEEEE-CCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986699975998999999999998-89899999-99799999997-1899899998365599979999999985899859
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVSC-NNGASAYDKVR-EEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~-~G~~v~~a-~~g~~al~~~~-~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+-||.||---..-+..+..+++. .++++..+ +.-.+..+.+. +..++.-.. +.++ +.+. .+++-+
T Consensus 1 M~irv~iiG~G~~g~~h~~~~~~~~~~~~l~~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~--~ll~--~~~~D~ 69 (344)
T 3mz0_A 1 MSLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVY-------PNDD--SLLA--DENVDA 69 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEE-------SSHH--HHHH--CTTCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEE-------CCHH--HHHC--CCCCCE
T ss_conf 9704999998299999999998428996899998999999999999858998067-------9999--9955--999888
Q ss_pred EEEECCC--CHHHHHHHHHCCCCEEEECCC--CHHHHHHHHH
Q ss_conf 9994379--789999999769986997697--9899999999
Q gi|254780312|r 78 MFITGFA--AVALNPDSNAPKNAKVLSKPF--HLRDLVNEVN 115 (122)
Q Consensus 78 i~~s~~~--~~~~~~~~~~~g~~~~l~KP~--~~~~L~~~i~ 115 (122)
++++.-+ ..+....+++.|..-|+.||+ +.++..+-++
T Consensus 70 V~i~tp~~~H~~~~~~al~~gkhv~~EKP~a~~~~e~~~l~~ 111 (344)
T 3mz0_A 70 VLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVE 111 (344)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 996265211599999998549972646874212004789999
No 177
>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=52.75 E-value=13 Score=17.46 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=53.9
Q ss_pred CCC-EEEEECCCHHHHH-HHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 986-6999759989999-999999988989999999--799999997189989999836559997999999998589985
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRR-FLIKALGKAGYEVVSCNN--GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~-~l~~~L~~~G~~v~~a~~--g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
|++ ||-||-=-..-+. .+..+....++++..+.+ .+.+-+..++.. .|..+.++.+. +++-
T Consensus 3 mkkikigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~---------~~~~~~~~~l~------~~~D 67 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR---------IPYADSLSSLA------ASCD 67 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT---------CCBCSSHHHHH------TTCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHC---------CCCCCCHHHHH------CCCC
T ss_conf 87888999938899999999999739996899998899999999999829---------98228899985------6999
Q ss_pred EEEEECCCCH--HHHHHHHHCCCCEEEECCCC--HHHHHHH
Q ss_conf 9999437978--99999997699869976979--8999999
Q gi|254780312|r 77 VMFITGFAAV--ALNPDSNAPKNAKVLSKPFH--LRDLVNE 113 (122)
Q Consensus 77 ii~~s~~~~~--~~~~~~~~~g~~~~l~KP~~--~~~L~~~ 113 (122)
++++..-+.. +....+.+.|..-|+.||+. .++..+-
T Consensus 68 ~V~I~tp~~~H~~~~~~al~~gkhv~~EKP~~~~~~e~~~l 108 (319)
T 1tlt_A 68 AVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERL 108 (319)
T ss_dssp EEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
T ss_conf 99994886666899999986198799963650246677777
No 178
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=52.45 E-value=13 Score=17.43 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=60.8
Q ss_pred CCEEEEECCCH---HHHHHHHHHHHHCCCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH-
Q ss_conf 86699975998---99999999999889899999997-------99999997189989999836559997999999998-
Q gi|254780312|r 2 NQKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNG-------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE- 70 (122)
Q Consensus 2 ~~rILiVDD~~---~~r~~l~~~L~~~G~~v~~a~~g-------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~- 70 (122)
++||++|--|. .-.+.+.......|..+.....+ .+|++..+...+|+||+|-.=-.-.--++.+++++
T Consensus 128 g~kv~lva~Dt~R~aA~eQL~~~a~~~~v~v~~~~~~~dp~~i~~~a~~~a~~~~~D~viIDTAGR~~~d~~lm~EL~~i 207 (443)
T 3dm5_A 128 GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQI 207 (443)
T ss_dssp TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99424653145576699999998512456500676433667899999999986699989987887536589999999975
Q ss_pred ---HCCCCCEEEEECCCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf ---58998599994379789999999----7699869-976
Q gi|254780312|r 71 ---LDPDLKVMFITGFAAVALNPDSN----APKNAKV-LSK 103 (122)
Q Consensus 71 ---~~~~~pii~~s~~~~~~~~~~~~----~~g~~~~-l~K 103 (122)
..|+-.++++.+....+...++. ..+.+++ ++|
T Consensus 208 ~~~~~p~e~lLVlda~~gq~a~~~a~~f~~~~~i~giIlTK 248 (443)
T 3dm5_A 208 SNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTK 248 (443)
T ss_dssp HHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEEC
T ss_pred HCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 21469824787411434667899999855315888357733
No 179
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46
Probab=52.31 E-value=13 Score=17.42 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=51.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999759989999999999988989--9-999997999999971--899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--V-VSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v-~~a~~g~~al~~~~~--~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
++|..||-|+...+.+..-++..|.. + ....|...+++.+.+ .+||+|++|=--..-+..+++..+.+.
T Consensus 68 ~~v~~Ve~~~~~~~~~~~N~~~~~~~~~~~i~~~d~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~ 141 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLER 141 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHT
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 83589994246776766555420245641788610788877643026765359978987531799999999987
No 180
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A*
Probab=52.11 E-value=13 Score=17.40 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=31.6
Q ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC---CCCHHHH--HHHHHH
Q ss_conf 189989999836559997999999998589985999943797899999997699869976---9798999--999999
Q gi|254780312|r 44 EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK---PFHLRDL--VNEVNR 116 (122)
Q Consensus 44 ~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K---P~~~~~L--~~~i~~ 116 (122)
.++.|+|++|+. |. +|-...+..|... + -+++.+.++.|. .|+.| |+.++.| ++++++
T Consensus 146 ~~~~D~VlcDm~-es-S~~~~vd~~Rtl~----V--------Lelae~wL~pgg-~FvvKVl~py~~~vle~L~~lqr 208 (305)
T 2p41_A 146 PERCDTLLCDIG-ES-SPNPTVEAGRTLR----V--------LNLVENWLSNNT-QFCVKVLNPYMSSVIEKMEALQR 208 (305)
T ss_dssp CCCCSEEEECCC-CC-CSSHHHHHHHHHH----H--------HHHHHHHCCTTC-EEEEEESCCCSHHHHHHHHHHHH
T ss_pred CCCCCEEEECCC-CC-CCCCCCCCCCHHH----H--------HHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 887888984487-77-8996545432399----9--------999999834598-79999788899789999999999
No 181
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=51.94 E-value=13 Score=17.38 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=42.4
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 9999999799999997189989999836559997999999998589985999943797899999997699869
Q gi|254780312|r 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV 100 (122)
Q Consensus 28 ~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~ 100 (122)
-...+.+-.++.+.+..+ .|.|.+|-.=|. +=-++.+.+|+.+|++. |..||--+.+...+.-..|++.+
T Consensus 196 i~vEv~~l~ea~~a~~~g-~d~I~LDn~~~~-~i~~~v~~l~~~~~~v~-ieaSGGI~~~ni~~ya~~GVD~I 265 (285)
T 1o4u_A 196 IEVEVENLEDALRAVEAG-ADIVMLDNLSPE-EVKDISRRIKDINPNVI-VEVSGGITEENVSLYDFETVDVI 265 (285)
T ss_dssp EEEEESSHHHHHHHHHTT-CSEEEEESCCHH-HHHHHHHHHHHHCTTSE-EEEEECCCTTTGGGGCCTTCCEE
T ss_pred EEEEECHHHHHHHHHHCC-CCEEECCCCCHH-HHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHHHHCCCCEE
T ss_conf 799733299999999769-999942899878-89999999997589779-99989997999999986598999
No 182
>2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A*
Probab=51.90 E-value=13 Score=17.38 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=52.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf 669997599899999999999889-----8999-9999799999997189989999836559997-----9999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG-----YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG-----IELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G-----~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG-----~el~~~ir~~ 71 (122)
++|-+||=|+.+.+..+..+...+ =++. ...||.+.++.. +..||+|++|..=|.-.. .++.+.+++.
T Consensus 141 ~~v~~VEID~~Vv~~ak~~f~~~~~~~~dprv~v~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~ 219 (321)
T 2pt6_A 141 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNA 219 (321)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHH
T ss_conf 4147852579999999986266234436876269961699998736-676677999379988734665469999999997
Q ss_pred CCCCCEEEE
Q ss_conf 899859999
Q gi|254780312|r 72 DPDLKVMFI 80 (122)
Q Consensus 72 ~~~~pii~~ 80 (122)
-.+--+++.
T Consensus 220 L~~~Gi~v~ 228 (321)
T 2pt6_A 220 LKPNGYCVA 228 (321)
T ss_dssp EEEEEEEEE
T ss_pred CCCCCEEEE
T ss_conf 489949999
No 183
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=51.46 E-value=13 Score=17.34 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=41.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC------CE---EE-EECCHHHHHHHHH--HCCCCEEEEEEECC
Q ss_conf 669997599899999999999889------89---99-9999799999997--18998999983655
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG------YE---VV-SCNNGASAYDKVR--EEPFSLLLTDIVMP 57 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G------~~---v~-~a~~g~~al~~~~--~~~~dlii~D~~mP 57 (122)
++|-+||=|+.+-++.++.|.... .+ +. ...||.+.++... ...||+|++|..-|
T Consensus 212 ~~V~~VEID~~Vve~akk~~~~~~~~~~d~~r~~rv~iii~Da~~~l~~~~~~~~~yDvIi~Dl~d~ 278 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 278 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 4289971038999999986565400121084423443355779999997453247502999807887
No 184
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=51.22 E-value=13 Score=17.31 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=34.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 6999759989999999999988989999-9997999999971899899998365
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVM 56 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~m 56 (122)
++..||-++.+.+..++.....+..+.. ..++.+.........||.|+.|.-.
T Consensus 85 ~vt~id~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~D~~~ 138 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCCCCCCEEECCEE
T ss_conf 799980898999999998875588620232008876201223566744521162
No 185
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=50.85 E-value=14 Score=17.28 Aligned_cols=64 Identities=13% Similarity=0.252 Sum_probs=47.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-E-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 66999759989999999999988989-9-9999979999999718998999983655999799999999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-V-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
.+|.-||-++...+..+..+...|+. | ....|+.+++. ...+||.|+++...+... -.++++++
T Consensus 101 ~~V~~iE~~~~l~~~A~~~l~~~g~~nv~~~~gD~~~g~~--~~~~fD~Iiv~~~~~~ip-~~l~~qLk 166 (317)
T 1dl5_A 101 GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--EFSPYDVIFVTVGVDEVP-ETWFTQLK 166 (317)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--GGCCEEEEEECSBBSCCC-HHHHHHEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC--CCCCCCEEEECCCHHHHH-HHHHHHCC
T ss_conf 6799995781789999998997357873999895575887--789941999968768858-99998438
No 186
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=50.79 E-value=14 Score=17.27 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=51.6
Q ss_pred EEEEECCCHHH----------HHHHHHHHHHCCCEEEEE-----------------CCH---HHHHH----HHHHCCCCE
Q ss_conf 69997599899----------999999999889899999-----------------997---99999----997189989
Q gi|254780312|r 4 KILLAEDDDDM----------RRFLIKALGKAGYEVVSC-----------------NNG---ASAYD----KVREEPFSL 49 (122)
Q Consensus 4 rILiVDD~~~~----------r~~l~~~L~~~G~~v~~a-----------------~~g---~~al~----~~~~~~~dl 49 (122)
|||++-|+-+. +..+...|...|+.+... .+| ..... .+....||+
T Consensus 7 rIl~iGDSiT~G~g~~~~~~y~~~l~~~l~~~~~~v~~~~~~~~g~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~pd~ 86 (215)
T 2vpt_A 7 KIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTHNPDV 86 (215)
T ss_dssp EEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEEEECHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 89998605613848999996699999999855995699831346775455655355277768999999999986569988
Q ss_pred EEEEEEC-----C-CCC---HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9998365-----5-999---7999999998589985999943797
Q gi|254780312|r 50 LLTDIVM-----P-EMD---GIELARRATELDPDLKVMFITGFAA 85 (122)
Q Consensus 50 ii~D~~m-----P-~~d---G~el~~~ir~~~~~~pii~~s~~~~ 85 (122)
|++-+.. + ... --++++.+++..|+.+++..+-...
T Consensus 87 vvi~~G~ND~~~~~~~~~~~~~~~i~~l~~~~~~~~ii~~~~~~~ 131 (215)
T 2vpt_A 87 VFLWIGGNDLLLNGNLNATGLSNLIDQIFTVKPNVTLFVADYYPW 131 (215)
T ss_dssp EEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCTTCEEEEECCCSC
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999778866444555467788888999998589988998347687
No 187
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=50.67 E-value=14 Score=17.26 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHHHCCCCEEEEEEEC--C-CCCHHHHHHHH
Q ss_conf 8669997599---8999999999998898999999979-------99999971899899998365--5-99979999999
Q gi|254780312|r 2 NQKILLAEDD---DDMRRFLIKALGKAGYEVVSCNNGA-------SAYDKVREEPFSLLLTDIVM--P-EMDGIELARRA 68 (122)
Q Consensus 2 ~~rILiVDD~---~~~r~~l~~~L~~~G~~v~~a~~g~-------~al~~~~~~~~dlii~D~~m--P-~~dG~el~~~i 68 (122)
++||++|--| +...+.++.+.+..|..+....++. +|++....+.+|+||+|-.= | +.+=++=++.+
T Consensus 157 g~kv~l~~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d~~~v~~~a~~~a~~~~~D~vlIDTaGR~~~~~~l~~el~~i 236 (328)
T 3e70_C 157 GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKI 236 (328)
T ss_dssp TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99605763232450799999999887357614678999999999999999998699989867877761309999999999
Q ss_pred H-HHCCCCCEEEEECCCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf 9-858998599994379789999999----7699869-976
Q gi|254780312|r 69 T-ELDPDLKVMFITGFAAVALNPDSN----APKNAKV-LSK 103 (122)
Q Consensus 69 r-~~~~~~pii~~s~~~~~~~~~~~~----~~g~~~~-l~K 103 (122)
. ...|+..++++++........++. ..+.++. ++|
T Consensus 237 ~~~~~p~~~llV~da~~g~~~~~~~~~f~~~~~~~g~IlTK 277 (328)
T 3e70_C 237 ARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp HHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 97629974776234212289999999986228998699970
No 188
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structural genomics, NPPSFA; 1.64A {Thermus thermophilus HB8}
Probab=50.08 E-value=14 Score=17.20 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=34.7
Q ss_pred EEEEECCC-------HHHHHHHHHHHHHCCCEEEE---ECCHHH----HHHHH-HHCCCCEEEEEEEC
Q ss_conf 69997599-------89999999999988989999---999799----99999-71899899998365
Q gi|254780312|r 4 KILLAEDD-------DDMRRFLIKALGKAGYEVVS---CNNGAS----AYDKV-REEPFSLLLTDIVM 56 (122)
Q Consensus 4 rILiVDD~-------~~~r~~l~~~L~~~G~~v~~---a~~g~~----al~~~-~~~~~dlii~D~~m 56 (122)
.||.+.|+ ..+...+...|.+.||+|.. +.|-.+ ++..+ ..+.+|+||+-=..
T Consensus 5 ~Iitigde~~~G~~~D~ng~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 5 GILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEECCCCCCCCEECCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 99995887504671365099999999968998989999798889999999999845498689967861
No 189
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=49.76 E-value=14 Score=17.17 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH
Q ss_conf 989999999999988989999-9997999999971899899998365599979
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~ 62 (122)
......+++.+|++.||+|.. ..+..-.+..+.++..|+.+--+ +|...+.
T Consensus 177 ~~a~t~v~~~iLe~~Gy~Ve~~~~~~~~~~~~l~~GdiD~~~e~W-~p~~~~~ 228 (268)
T 2b4l_A 177 EIASTNVIGKVLEDLGYEVTLTQVEAGPMWTAIATGSADASLSAW-LPNTHKA 228 (268)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECCTTHHHHHHHHTSSSEEEEEE-ETTTTHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEECCC-CCCCHHH
T ss_conf 899999999999986995378877848899999779961863015-6864088
No 190
>3dqq_A Putative tRNA synthase; structural genomics, csgid, unknown function, center for structural genomics of infectious diseases; 2.70A {Salmonella typhimurium}
Probab=49.54 E-value=14 Score=17.15 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=44.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 6999759989999999999988989999999799999997189989999836559997999999998
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
|++|+.||.+=.+-....|.+.|+++....+...+ -....+|++++|-.=-.++.-+..+++++
T Consensus 4 ki~iiADDlTGA~dt~~~~~~~G~~t~v~~~~~~~---~~~~~~dvvvi~t~SR~l~~~eA~~~v~~ 67 (421)
T 3dqq_A 4 KIGVIADDFTGATDIASFLVENGMPTVQINDVPTG---TQPEGCDAVVISLKTRSCPAQEAIKQSLA 67 (421)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTTCCEEEEESSCCS---CCCSSCSEEEEECSCSSSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCC---CCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 89999338521899999999879839998568875---55678988999888789999999999999
No 191
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=49.30 E-value=14 Score=17.13 Aligned_cols=81 Identities=9% Similarity=0.059 Sum_probs=55.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----HHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCC
Q ss_conf 986699975998999999999998898999999979999999-----718998999983655999799-99999985899
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDIVMPEMDGIE-LARRATELDPD 74 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~-----~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~ 74 (122)
|+|.+||.--...+-..+...|.+.|++|..+.-..+.++.. +.....+...-..+-+.+..+ +.+.+.+....
T Consensus 1 MnKvalVTGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 80 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 99899991789789999999999879989999898889999999999854994899994079999999999999997599
Q ss_pred CCEEEEE
Q ss_conf 8599994
Q gi|254780312|r 75 LKVMFIT 81 (122)
Q Consensus 75 ~pii~~s 81 (122)
+-+++-.
T Consensus 81 iDiLVnn 87 (250)
T 2cfc_A 81 IDVLVNN 87 (250)
T ss_dssp CCEEEEC
T ss_pred CCEEEEC
T ss_conf 9799989
No 192
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=47.64 E-value=12 Score=17.63 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=34.1
Q ss_pred EEEEECCC-----------HHHHHHHHHHHHHCCCEEE---EECCHHHHHH-HH---HHCCCCEEEEEEEC
Q ss_conf 69997599-----------8999999999998898999---9999799999-99---71899899998365
Q gi|254780312|r 4 KILLAEDD-----------DDMRRFLIKALGKAGYEVV---SCNNGASAYD-KV---REEPFSLLLTDIVM 56 (122)
Q Consensus 4 rILiVDD~-----------~~~r~~l~~~L~~~G~~v~---~a~~g~~al~-~~---~~~~~dlii~D~~m 56 (122)
-|+++.|+ +.++..+...|.+.||+|. .+.|-.+++. .+ .+..+|+||+-=..
T Consensus 9 aiitigdei~~G~~~D~ng~~~~~~L~~~l~~~G~~v~~~~iv~D~~~~i~~~~~~~~~~~~DlVIttGG~ 79 (167)
T 2g2c_A 9 AIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGT 79 (167)
T ss_dssp EEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99996883304773578738999999999997896899998626758999999997652388889966887
No 193
>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583}
Probab=47.41 E-value=13 Score=17.35 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+...+...+.+.||.+..+.+ .+..+.+.+..+|.+|+ ++...--+.++++++. .+|+|++
T Consensus 25 ~l~~gi~~~~~~~g~~~~~~~~-~~~~~~l~~~~vdgiIl---~~~~~~~~~~~~l~~~--~iPvV~~ 86 (277)
T 3cs3_A 25 ELLEGIKKGLALFDYEMIVCSG-KKSHLFIPEKMVDGAII---LDWTFPTKEIEKFAER--GHSIVVL 86 (277)
T ss_dssp HHHHHHHHHHHTTTCEEEEEES-TTTTTCCCTTTCSEEEE---ECTTSCHHHHHHHHHT--TCEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEEC-HHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9999999999986998999808-58799999669998999---7277997999999974--9989998
No 194
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=47.38 E-value=15 Score=16.95 Aligned_cols=64 Identities=8% Similarity=0.013 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999999998898999999979------999999718998999983655999799999999858998599994
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNGA------SAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g~------~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
.+...+.+.++..||.+..+.++. ..++++.++.+|-+|+- |....-+.++.+++. .+|+|.+-
T Consensus 25 ~~~~~i~~~a~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vDGiIv~---~~~~~~~~~~~l~~~--~iPvV~i~ 94 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLS---SINYNDPRVQFLLKQ--KFPFVAFG 94 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEEC---SCCTTCHHHHHHHHT--TCCEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHHHC--CCCEEEEC
T ss_conf 99999999999779999999689998999999999981898789997---898998999999967--99799988
No 195
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=47.31 E-value=15 Score=16.94 Aligned_cols=102 Identities=9% Similarity=-0.020 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC-CCCCEEEEECCCCHHHHH
Q ss_conf 9999999999889--8999999979999999718998999983655999799999999858-998599994379789999
Q gi|254780312|r 14 MRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD-PDLKVMFITGFAAVALNP 90 (122)
Q Consensus 14 ~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~-~~~pii~~s~~~~~~~~~ 90 (122)
+++.+++.|+.-. +-+.+..+.....+.+....||.+++|++=-..|--++...++... ..+..++-....+.....
T Consensus 26 m~N~~k~~L~~G~~~~G~~~~~~sp~~~Ei~~~~GfDfv~ID~EHg~~~~~~~~~~i~aa~~~~~~~iVRvp~~~~~~i~ 105 (287)
T 2v5j_A 26 MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIK 105 (287)
T ss_dssp SCCHHHHHHHTTCCEEEEEECSCCHHHHHHHHTSCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH
T ss_conf 22899999987998799875789969999997389899998067898999999999998753599735546789999999
Q ss_pred HHHHCCCCEEEECCCC-HHHHHHHHH
Q ss_conf 9997699869976979-899999999
Q gi|254780312|r 91 DSNAPKNAKVLSKPFH-LRDLVNEVN 115 (122)
Q Consensus 91 ~~~~~g~~~~l~KP~~-~~~L~~~i~ 115 (122)
+++..|+.+++.-=++ .++..+.++
T Consensus 106 r~LD~Ga~GIivP~V~s~eea~~~v~ 131 (287)
T 2v5j_A 106 QLLDVGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHH
T ss_conf 99837998679467599999999998
No 196
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=47.22 E-value=15 Score=16.93 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=56.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC-CCCCEEEEE
Q ss_conf 6699975998999999999998898999999979999999718998999983655999799999999858-998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD-PDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~-~~~pii~~s 81 (122)
+||.||---=.+-..+...|.+.||+|............-.-...|+|++-. |--.=.++++++...- ++.-++=++
T Consensus 22 ~ki~iIGG~G~mG~sla~~l~~~G~~V~~~d~~~~~~~~~~~~~aD~Vilav--P~~~~~~~l~~~~~~l~~~~iv~Dv~ 99 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSV--PINLTLETIERLKPYLTENMLLADLT 99 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECS--CGGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEEC--CHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 8389992698678999999996899599974980432899875999999909--69999787898755248885697404
Q ss_pred CCCCHHHHHHHHHCCCCEEEE
Q ss_conf 379789999999769986997
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~ 102 (122)
+ ..........+.....|+.
T Consensus 100 S-vK~~i~~~~~~~~~~~fi~ 119 (298)
T 2pv7_A 100 S-VKREPLAKMLEVHTGAVLG 119 (298)
T ss_dssp S-CCHHHHHHHHHHCSSEEEE
T ss_pred C-CCHHHHHHHHHHCCCCEEE
T ss_conf 4-1268999998745688763
No 197
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=47.20 E-value=15 Score=16.93 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=56.8
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEE
Q ss_conf 6699975-99899999999999889--899999997999999971899899998365599979999999985-8998599
Q gi|254780312|r 3 QKILLAE-DDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVM 78 (122)
Q Consensus 3 ~rILiVD-D~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii 78 (122)
.++++.. +|+.+.+.+.+.-+.|| |++....+....+ ++.. -+++-+.|=+.+=-+....|++. ...-|++
T Consensus 31 ~~i~l~~~~D~~v~etv~~V~~rwGG~F~ve~~~~~~~~i---k~~~--G~vVHLTMYG~~i~dvi~~Ir~~~~~~~~iL 105 (201)
T 2yy8_A 31 DGIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVM---KEFT--GVKVHLTMYGLHVDDVIEELKEKLKKGEDFM 105 (201)
T ss_dssp SEEEESSSCCHHHHHHHHHHHHHHCSCCBCCBCSCHHHHH---HHCC--SEEEEEEEEEEEHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHH---HHCC--CEEEEEECCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 7589747887369999999998529966999746889999---8659--9799984478760267798875255688589
Q ss_pred EEECCCC
Q ss_conf 9943797
Q gi|254780312|r 79 FITGFAA 85 (122)
Q Consensus 79 ~~s~~~~ 85 (122)
++.|-..
T Consensus 106 VVVGaeK 112 (201)
T 2yy8_A 106 IIVGAEK 112 (201)
T ss_dssp EEECSSC
T ss_pred EEECCCC
T ss_conf 9978885
No 198
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A
Probab=46.83 E-value=16 Score=16.90 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEC---CHHHHHHHHHHCCCCEEEE
Q ss_conf 8999999999998898999999---9799999997189989999
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLT 52 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~a~---~g~~al~~~~~~~~dlii~ 52 (122)
.....+++..|+..||.|.... +....+..+.++..|+..-
T Consensus 19 ~~~a~i~~~~Le~~Gy~Ve~~~~~~~~~~~~~al~~GdiDv~~e 62 (275)
T 1sw5_A 19 YILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVE 62 (275)
T ss_dssp HHHHHHHHHHHHHTTCCEEECTTCCSHHHHHHHHHHTSSSEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEE
T ss_conf 99999999999986996599864786088999997699778973
No 199
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=46.13 E-value=16 Score=16.83 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCC-EEEEECCCHHH-HHHHHHHHHHCCCEEEEE--CCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 986-69997599899-999999999889899999--997999999971---89989999836559997999999998589
Q gi|254780312|r 1 MNQ-KILLAEDDDDM-RRFLIKALGKAGYEVVSC--NNGASAYDKVRE---EPFSLLLTDIVMPEMDGIELARRATELDP 73 (122)
Q Consensus 1 M~~-rILiVDD~~~~-r~~l~~~L~~~G~~v~~a--~~g~~al~~~~~---~~~dlii~D~~mP~~dG~el~~~ir~~~~ 73 (122)
|+| +||++++.... ...... |+.. |++... .+..+..+.+.+ ..+|+++.....+......+-+.+-+.-|
T Consensus 1 M~kpkvL~~~~~~~~~~~~~~~-l~~~-~ev~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~e~l~~~p 78 (348)
T 2w2k_A 1 MPRPRVLLLGDPARHLDDLWSD-FQQK-FEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP 78 (348)
T ss_dssp -CCCEEEECSSCCSSCHHHHHH-HHHH-SEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSC
T ss_pred CCCCEEEEECCCCCCCHHHHHH-HHCC-CEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCC
T ss_conf 9998999989975000999999-6588-1799789999799999988505378059997443576656887899997331
Q ss_pred -CCCEEEEECCCCHHH-HHHHHHCCCC
Q ss_conf -985999943797899-9999976998
Q gi|254780312|r 74 -DLKVMFITGFAAVAL-NPDSNAPKNA 98 (122)
Q Consensus 74 -~~pii~~s~~~~~~~-~~~~~~~g~~ 98 (122)
++++|...|.+-... ...+.+.|+.
T Consensus 79 ~~Lk~I~~~~~G~d~iD~~~~~~~gI~ 105 (348)
T 2w2k_A 79 SSLKVFAAAGAGFDWLDLDALNERGVA 105 (348)
T ss_dssp TTCCEEEESSSCCTTBCHHHHHHTTCE
T ss_pred CCCEEEEECCCCCCHHCHHHHHHCCEE
T ss_conf 172799998836650069999869938
No 200
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, PSI, MCSG; 2.00A {Saccharomyces cerevisiae}
Probab=46.11 E-value=16 Score=16.83 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=52.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHC-CCCEEEEEEECCCCCHH-HHHHHHHHHCCCCC
Q ss_conf 9866999759989999999999988989999--99979999999718-99899998365599979-99999998589985
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREE-PFSLLLTDIVMPEMDGI-ELARRATELDPDLK 76 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~-~~dlii~D~~mP~~dG~-el~~~ir~~~~~~p 76 (122)
|.|.+||.--...+-..+...|-+.|+.|.. ....++.++.+.+. ...+...-..+-+.+.. ++++++.+....+-
T Consensus 1 MGKv~lITGas~GIG~aia~~la~~Ga~v~v~~~~r~~~~l~~l~~~~~~~~~~~~~Dvt~~~~~~~~~~~~~~~~g~id 80 (254)
T 3kzv_A 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKID 80 (254)
T ss_dssp -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99989994777599999999999779988999726999999999997099479998128999999999999999739977
Q ss_pred EEEEEC
Q ss_conf 999943
Q gi|254780312|r 77 VMFITG 82 (122)
Q Consensus 77 ii~~s~ 82 (122)
+++..+
T Consensus 81 ilvnnA 86 (254)
T 3kzv_A 81 SLVANA 86 (254)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 446613
No 201
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=45.69 E-value=16 Score=16.79 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE------CCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999858998599994379789999999769986997------6979899999999996036
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS------KPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~------KP~~~~~L~~~i~~~l~~~ 121 (122)
++.+.++++ ..++|+|..-|..+.+...+.+..|++.... .|+-..++.+.+.+.|..+
T Consensus 230 l~~v~~i~~-~~~ipIIg~GGI~s~~D~~~~l~~GAd~V~ig~~~~~~P~~~~~i~~~L~~~m~~~ 294 (311)
T 1ep3_A 230 LKLIHQVAQ-DVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQY 294 (311)
T ss_dssp HHHHHHHHT-TCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 899999863-35677797689599999999998199999962888629879999999999999983
No 202
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=45.47 E-value=15 Score=17.05 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=42.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 86699975998999999999998898999999979999999718998999983655999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~d 60 (122)
..+|.-+|.++......+..+...+.-.....||..++. .+.+||.|++....+.+.
T Consensus 92 ~~~V~~vE~~~~~~~~A~~~~~~~~nv~~~~gDg~~g~~--~~~pfD~Iiv~~~~~~ip 148 (231)
T 1vbf_A 92 VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE--EEKPYDRVVVWATAPTLL 148 (231)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG--GGCCEEEEEESSBBSSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCC--CCCCEEEEEECCCHHHHH
T ss_conf 678767628999999999874068626898663202873--469857999857578848
No 203
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=45.44 E-value=12 Score=17.52 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE-EEE-ECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHH-HHHHHHHH-CCCCC
Q ss_conf 866999759989999999999988989-999-99979999999718998999983655-999799-99999985-89985
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVS-CNNGASAYDKVREEPFSLLLTDIVMP-EMDGIE-LARRATEL-DPDLK 76 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~-v~~-a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~e-l~~~ir~~-~~~~p 76 (122)
.++|..||=++.......+..+..|.. +.. ..|..+.+.....+.||+|++|- | ...|.. ++++..+. .+.-.
T Consensus 195 ~~~V~~vDi~~~~l~~a~~~a~~~g~~~i~~~~~d~~~~~~~~~~~~fD~v~~dp--p~~~~~~~~~l~r~~~~l~~~g~ 272 (373)
T 2qm3_A 195 PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP--PETLEAIRAFVGRGIATLKGPRC 272 (373)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC--CSSHHHHHHHHHHHHHTBCSTTC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEECC--CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9989999797999999999999819974399853086632454078889899899--98644277999999998456762
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780312|r 77 VMFI 80 (122)
Q Consensus 77 ii~~ 80 (122)
.+++
T Consensus 273 ~~~~ 276 (373)
T 2qm3_A 273 AGYF 276 (373)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 7999
No 204
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=45.36 E-value=4.8 Score=19.96 Aligned_cols=63 Identities=16% Similarity=0.355 Sum_probs=47.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 66999759989999999999988989-99-99997999999971899899998365599979999999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-VV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~i 68 (122)
.+|.-||-++...+..++.+...|+. |. ...|+.+++ ....+||.|++....+.+.- .+++++
T Consensus 115 ~~V~~IE~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~--~~~~~fD~I~v~~a~~~ip~-~l~~qL 179 (235)
T 1jg1_A 115 TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF--PPKAPYDVIIVTAGAPKIPE-PLIEQL 179 (235)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC--GGGCCEEEEEECSBBSSCCH-HHHHTE
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCCCCCEEEEECCHHHCCH-HHHHHC
T ss_conf 739999628899999999999809971699988700166--65576343676146554349-999846
No 205
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=45.18 E-value=17 Score=16.74 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=42.8
Q ss_pred CEEEEECCCH--H----HHHHHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 6699975998--9----999999999988989999999---------799999997189989999836559997999999
Q gi|254780312|r 3 QKILLAEDDD--D----MRRFLIKALGKAGYEVVSCNN---------GASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67 (122)
Q Consensus 3 ~rILiVDD~~--~----~r~~l~~~L~~~G~~v~~a~~---------g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ 67 (122)
+|+|||-|.- . ...-+...|++.|+.+..... ..++.+..++..+|+||- .-+-+-.+.++.
T Consensus 34 kkvlivt~~~~~~~~~~~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~Iia---vGGGs~iD~aK~ 110 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVT---VGGGSPHDCGKG 110 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEE---EESHHHHHHHHH
T ss_pred CEEEEEECCCHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---CCCCCCCCHHHH
T ss_conf 86999989767861156999999999976995999837368999999999999887339988998---088640008888
Q ss_pred HH
Q ss_conf 99
Q gi|254780312|r 68 AT 69 (122)
Q Consensus 68 ir 69 (122)
+.
T Consensus 111 va 112 (387)
T 3bfj_A 111 IG 112 (387)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 206
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 2ogu_A 2fy8_A 3kxd_A
Probab=44.72 E-value=17 Score=16.70 Aligned_cols=92 Identities=11% Similarity=0.196 Sum_probs=56.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 66999759989999999999988989999-99979999999718998999983655999799999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
+.+.++|.|+..+..+ ...|+.+.. -.+-.+.|..+.-...+.++.... -+..-+..+..+|+..+.++++.-.
T Consensus 31 ~~v~vi~~d~~~~~~~----~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vii~~~-~D~~n~~~~~~~r~~~~~~~ii~~~ 105 (234)
T 2aef_A 31 SEVFVLAEDENVRKKV----LRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE-SDSETIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp SEEEEEESCGGGHHHH----HHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCS-CHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred CCCEEEECCHHHHHHH----HHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9978998898999999----9669849998269999998658673439999935-7312167887666516761499998
Q ss_pred CCCCHHHHHHHHHCCCCEEE
Q ss_conf 37978999999976998699
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVL 101 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l 101 (122)
. +.+........|++..+
T Consensus 106 ~--~~~~~~~l~~~g~d~vi 123 (234)
T 2aef_A 106 E--RYENIEQLRMAGADQVI 123 (234)
T ss_dssp S--SGGGHHHHHHHTCSEEE
T ss_pred C--CHHHHHHHHCCCCCEEE
T ss_conf 6--85675543005998998
No 207
>2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46
Probab=44.10 E-value=17 Score=16.64 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=44.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 66999759989999999999988989--99-9999799999997189989999836559997999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
++|..||-|+...+.+...+...+.. +. ...+..+.++.. ...||+|++|---...+..+++..+.+
T Consensus 55 ~~v~~ve~~~~a~~~~~~n~~~~~~~~~v~ii~~D~~~~l~~~-~~~fDiI~~DPPy~~~~~~~~l~~l~~ 124 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-TGRFDLVFLDPPYAKETIVATIEALAA 124 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-CSCEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCC-CCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2016783428899988875765135551024531155554313-467886887997431169999999997
No 208
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A
Probab=43.75 E-value=18 Score=16.61 Aligned_cols=16 Identities=0% Similarity=-0.166 Sum_probs=6.1
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999999769986997
Q gi|254780312|r 87 ALNPDSNAPKNAKVLS 102 (122)
Q Consensus 87 ~~~~~~~~~g~~~~l~ 102 (122)
+........+...++.
T Consensus 125 ~~~~~~~~~~~~~~~~ 140 (221)
T 3exr_A 125 DQAQQWLDAGISQAIY 140 (221)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999988546335987
No 209
>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A
Probab=43.51 E-value=18 Score=16.59 Aligned_cols=90 Identities=11% Similarity=0.031 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEE---EEECCCCCHHHHHHHHHH-HCCCCCEEEEECCCCH
Q ss_conf 89999999999988989999-999799999997189989999---836559997999999998-5899859999437978
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLT---DIVMPEMDGIELARRATE-LDPDLKVMFITGFAAV 86 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~---D~~mP~~dG~el~~~ir~-~~~~~pii~~s~~~~~ 86 (122)
.....-+...-.+.|.++.. +.|.+|.-..+.- ..++|-. |+.-...|-- .+.++.. ..++..+|.-||....
T Consensus 138 ~~~l~~l~~~a~~lGle~LvEvh~~~El~~a~~~-~a~iIGINnRnL~t~~vd~~-~~~~l~~~ip~~~~~IaESGI~t~ 215 (247)
T 1a53_A 138 ERELESLLEYARSYGMEPLIEINDENDLDIALRI-GARFIGINSRDLETLEINKE-NQRKLISMIPSNVVKVAESGISER 215 (247)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHT-TCSEEEEESBCTTTCCBCHH-HHHHHHHHSCTTSEEEEESCCCCH
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC-CCCEEEEECCCHHHCCCCHH-HHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 8889999999998498757773799999999818-99849871411432044767-899999638889879996479999
Q ss_pred HHHHHHHHCCCCEEEEC
Q ss_conf 99999997699869976
Q gi|254780312|r 87 ALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 87 ~~~~~~~~~g~~~~l~K 103 (122)
+........|+++++.-
T Consensus 216 ed~~~l~~~G~davLIG 232 (247)
T 1a53_A 216 NEIEELRKLGVNAFLIG 232 (247)
T ss_dssp HHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHCCCCEEEEC
T ss_conf 99999997799999989
No 210
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=43.43 E-value=11 Score=17.87 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCC------CHHH--HHHHHHH---HCCCCCEEEEECCCCH--HHHHHHHHCCCCEE
Q ss_conf 97999999971899899998365599------9799--9999998---5899859999437978--99999997699869
Q gi|254780312|r 34 NGASAYDKVREEPFSLLLTDIVMPEM------DGIE--LARRATE---LDPDLKVMFITGFAAV--ALNPDSNAPKNAKV 100 (122)
Q Consensus 34 ~g~~al~~~~~~~~dlii~D~~mP~~------dG~e--l~~~ir~---~~~~~pii~~s~~~~~--~~~~~~~~~g~~~~ 100 (122)
++++..++++++ .+|+|++-|.. .|-- -...+.+ ..++-|++++-..+.. .......+.|...|
T Consensus 5 ~p~el~~~l~~~---~~liDvR~~~e~~~ghi~ga~~ip~~~l~~~~~~~~~~~iv~~C~~g~rs~~aa~~L~~~G~~~~ 81 (94)
T 1wv9_A 5 RPEELPALLEEG---VLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGLPRRPLLLVCEKGLLSQVAALYLEAEGYEAM 81 (94)
T ss_dssp CGGGHHHHHHTT---CEEEECCCC--CCSCCSSCCEECCHHHHTTTCCCCCSSCEEEECSSSHHHHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHCC---CEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf 999999998599---88997923899663861674317602067775440344436777998249999999998699399
Q ss_pred EE
Q ss_conf 97
Q gi|254780312|r 101 LS 102 (122)
Q Consensus 101 l~ 102 (122)
..
T Consensus 82 ~l 83 (94)
T 1wv9_A 82 SL 83 (94)
T ss_dssp EE
T ss_pred EE
T ss_conf 95
No 211
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=43.17 E-value=18 Score=16.55 Aligned_cols=80 Identities=9% Similarity=0.196 Sum_probs=51.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC---CHHH---HHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCC
Q ss_conf 986699975998999999999998898999999---9799---99999718998999983655999799-9999998589
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGAS---AYDKVREEPFSLLLTDIVMPEMDGIE-LARRATELDP 73 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~---~g~~---al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~ 73 (122)
|+|-+||.--...+-..+.+.|-+.|+.|..+. +..+ ..+.+......+...-..+-+.+..+ +.+.+.+...
T Consensus 1 M~KvalVTGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 80 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 99899990788689999999999879989999589887899999999985699489999027999999999999999829
Q ss_pred CCCEEEE
Q ss_conf 9859999
Q gi|254780312|r 74 DLKVMFI 80 (122)
Q Consensus 74 ~~pii~~ 80 (122)
.+-+++-
T Consensus 81 ~iDiLVn 87 (258)
T 3a28_C 81 GFDVLVN 87 (258)
T ss_dssp CCCEEEE
T ss_pred CCCEEEE
T ss_conf 9839998
No 212
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=43.10 E-value=18 Score=16.55 Aligned_cols=99 Identities=12% Similarity=-0.011 Sum_probs=64.6
Q ss_pred HHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHH-HHHHCCCCCEEEEECCCCHHH
Q ss_conf 99999998898999--99997999999971899899998365599979-----99999-998589985999943797899
Q gi|254780312|r 17 FLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARR-ATELDPDLKVMFITGFAAVAL 88 (122)
Q Consensus 17 ~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~-ir~~~~~~pii~~s~~~~~~~ 88 (122)
...+.|-..||+|. +..|..-|-.+-.-+. ..++-+.=|--+|. ..++. +++..+.+|+|+=-|.+....
T Consensus 115 ~Aae~Lv~~GF~VlpY~~~D~~~ak~Le~~Gc--~aVMPl~sPIGsg~Gi~n~~~l~i~i~~~~~~vPvivDAGIG~pSd 192 (268)
T 2htm_A 115 KAAERLIEEDFLVLPYMGPDLVLAKRLAALGT--ATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSH 192 (268)
T ss_dssp HHHHHHHHTTCEECCEECSCHHHHHHHHHHTC--SCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHH
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHCCC--CEEEECHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHH
T ss_conf 99999985896899956878999999987698--6787324243157640388788899987457787686358899899
Q ss_pred HHHHHHCCCCEEEEC-----CCCHHHHHHHHHHH
Q ss_conf 999997699869976-----97989999999999
Q gi|254780312|r 89 NPDSNAPKNAKVLSK-----PFHLRDLVNEVNRL 117 (122)
Q Consensus 89 ~~~~~~~g~~~~l~K-----P~~~~~L~~~i~~~ 117 (122)
..++++.|+++.|.- --+|-...++++.+
T Consensus 193 Aa~aMElG~DaVLvNTAIa~a~dP~~MA~A~~~A 226 (268)
T 2htm_A 193 AAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLA 226 (268)
T ss_dssp HHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
T ss_conf 9999974798999763766379989999999999
No 213
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens}
Probab=42.10 E-value=19 Score=16.45 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=57.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 66999759989999999999988989999999--7999999971899899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNN--GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~--g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+||||.|.-. ....+.|++.|++|....+ .++-++.+ ..+|.+++-..- .. -+.+-+..|++++|..
T Consensus 27 ~kvLi~~~~~---~~~~~~L~~~g~ev~~~~~~~~eel~~~~--~d~d~li~~~~~-~i-----~~~vl~~~~~LK~I~~ 95 (335)
T 2g76_A 27 RKVLISDSLD---PCCRKILQDGGLQVVEKQNLSKEELIAEL--QDCEGLIVRSAT-KV-----TADVINAAEKLQVVGR 95 (335)
T ss_dssp CEEEECSCCC---HHHHHHHHHHTCEEEECCSCCHHHHHHHG--GGCSEEEECSSS-CB-----CHHHHHHCSSCCEEEE
T ss_pred CEEEEECCCC---HHHHHHHHHCCCEEEECCCCCHHHHHHHH--CCCCEEEECCCC-CC-----CHHHHHCCCCCEEEEE
T ss_conf 7699917999---89999999789899979998999999983--898499986898-87-----9999931999769996
Q ss_pred ECCCCHHH-HHHHHHCCCCEEEECCCCHHHH
Q ss_conf 43797899-9999976998699769798999
Q gi|254780312|r 81 TGFAAVAL-NPDSNAPKNAKVLSKPFHLRDL 110 (122)
Q Consensus 81 s~~~~~~~-~~~~~~~g~~~~l~KP~~~~~L 110 (122)
.|.+-... ...+.+.|+.-+-.........
T Consensus 96 ~g~G~D~iD~~~a~~~gI~v~n~p~~~~~~V 126 (335)
T 2g76_A 96 AGTGVDNVDLEAATRKGILVMNTPNGNSLSA 126 (335)
T ss_dssp SSSSCTTBCHHHHHHHTCEEECCSSTTHHHH
T ss_pred CCCCCCCCCHHHHHHCCEEEECCCCCCCHHH
T ss_conf 6854562669999867905742798763147
No 214
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=42.02 E-value=19 Score=16.45 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=45.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HH----HHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHHCCCC
Q ss_conf 6999759989999999999988989999999--79----999999718998999983655999--799999999858998
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNN--GA----SAYDKVREEPFSLLLTDIVMPEMD--GIELARRATELDPDL 75 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~--g~----~al~~~~~~~~dlii~D~~mP~~d--G~el~~~ir~~~~~~ 75 (122)
.++++||....|.++...-- .+-....... .. +.++.+.++.-=.+++|..+|.+. |.++++..++. ++
T Consensus 33 d~i~~E~~r~~~~~l~~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~lvSdaG~P~IaDPG~~lv~~a~~~--gi 109 (117)
T 3hh1_A 33 GAIACEDTRRTSILLKHFGI-EGKRLVSYHSFNEERAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAA--GL 109 (117)
T ss_dssp SEEEESCHHHHHHHHHHTTC-CSCCEEECCSTTHHHHHHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHT--TC
T ss_pred CEEEECCCHHHHHHHHHHCC-CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHHHHHHHC--CC
T ss_conf 99998274015889987376-6753886156516888999999998499699995589963767699999999986--99
Q ss_pred CEEEEEC
Q ss_conf 5999943
Q gi|254780312|r 76 KVMFITG 82 (122)
Q Consensus 76 pii~~s~ 82 (122)
+|.++.|
T Consensus 110 ~V~~ipG 116 (117)
T 3hh1_A 110 PVVPVPG 116 (117)
T ss_dssp CEEEEC-
T ss_pred CEEECCC
T ss_conf 5895699
No 215
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=41.95 E-value=19 Score=16.44 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=30.8
Q ss_pred CHHHHHHHHH---HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 9799999997---189989999836559997999999998589985999943797899999997699
Q gi|254780312|r 34 NGASAYDKVR---EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN 97 (122)
Q Consensus 34 ~g~~al~~~~---~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~ 97 (122)
|..+|+.... ++--|++.+- |.+.=+++++.+|+..+++|+...--.++..+...+.+.|.
T Consensus 241 n~~eA~re~~~D~~EGAD~lMVK---Pa~~yLDiI~~~k~~~~~~Pv~aYqVSGEYamikaaa~~g~ 304 (342)
T 1h7n_A 241 GRGLARRALERDMSEGADGIIVK---PSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGV 304 (342)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE---SSGGGHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC---CCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 88999999975376099879961---77148899999997466998799974369999999998799
No 216
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=41.95 E-value=19 Score=16.44 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=56.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCCCCEEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799-99999985899859999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATELDPDLKVMFI 80 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~pii~~ 80 (122)
.|++||.--...+-..++..|.+.|+.|..+..-++.++.+.++-.+....-..+-+.+..+ +.+++.+....+-+++-
T Consensus 9 GKvalITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVn 88 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVN 88 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 98899948888899999999998799999997998999999986699779982079999999999999997499988998
Q ss_pred EC
Q ss_conf 43
Q gi|254780312|r 81 TG 82 (122)
Q Consensus 81 s~ 82 (122)
.+
T Consensus 89 nA 90 (270)
T 1yde_A 89 NA 90 (270)
T ss_dssp CC
T ss_pred CC
T ss_conf 99
No 217
>3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=41.93 E-value=19 Score=16.44 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCH--HHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99999999999889899999997999999971-89989999836559997--9999999985899859999437978999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG--IELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
.+.+-++..|.+.|..+....+.......+.. .+-|++|. +.-.+.+. .++++..|+....+++|.+|+.......
T Consensus 72 ~vA~~~~~kl~~lG~~~~~~~d~~~~~~~~~~~~~~DvlI~-iS~SG~T~evi~~~~~ak~~~~~~~vI~IT~~~~S~la 150 (220)
T 3etn_A 72 QIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLL-ISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLA 150 (220)
T ss_dssp HHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEE-ECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHH
T ss_pred HHHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 99999999999839940527817788888515888888999-82899866588889998740468715888605887421
Q ss_pred HHH
Q ss_conf 999
Q gi|254780312|r 90 PDS 92 (122)
Q Consensus 90 ~~~ 92 (122)
..+
T Consensus 151 k~a 153 (220)
T 3etn_A 151 SES 153 (220)
T ss_dssp HHS
T ss_pred CCC
T ss_conf 358
No 218
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=40.70 E-value=20 Score=16.32 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=40.1
Q ss_pred ECCHHHHHHHHH---HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 999799999997---1899899998365599979999999985899859999437978999999976998
Q gi|254780312|r 32 CNNGASAYDKVR---EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 32 a~~g~~al~~~~---~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
..|..+|+.... ++--|++.+- |.+.=+++++.+|+..+++|+....-.++..+...+.+.|.-
T Consensus 228 ~~n~~eAl~e~~~D~~EGAD~~mVK---Pa~~yLDii~~~k~~~~~~Pv~aYqVSGEYami~aaa~~g~~ 294 (330)
T 1pv8_A 228 PGARGLALRAVDRDVREGADMLMVK---PGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAF 294 (330)
T ss_dssp TTCHHHHHHHHHHHHHTTCSBEEEE---SCGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCC
T ss_conf 8669999999998875698779962---640789999999974789987999760899999999987998
No 219
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=40.54 E-value=5.6 Score=19.57 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=46.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC--C----CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHH
Q ss_conf 66999759989999999999988--9----8999-9999799999997189989999836559997-----999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA--G----YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG-----IELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~--G----~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG-----~el~~~ir~ 70 (122)
++|-+||=|+.+-++.+..|... | =++. ...||.+.+.. ..+.||+|++|..=|...+ .++.+.+++
T Consensus 108 ~~v~~VEiD~~Vi~~a~~~~~~~~~~~~~dprv~i~~~Da~~~l~~-~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~ 186 (294)
T 3adn_A 108 ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ-TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKR 186 (294)
T ss_dssp CEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C-CCCCEEEEEECC----------CCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHH-CCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHH
T ss_conf 6389971789999998744841135546788579995168999851-688777899808877887746568999999998
Q ss_pred HC
Q ss_conf 58
Q gi|254780312|r 71 LD 72 (122)
Q Consensus 71 ~~ 72 (122)
.-
T Consensus 187 ~L 188 (294)
T 3adn_A 187 CL 188 (294)
T ss_dssp TE
T ss_pred HH
T ss_conf 73
No 220
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, joint center for structural genomics, JCSG; HET: PGE; 2.13A {Mesorhizobium SP}
Probab=40.51 E-value=20 Score=16.30 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHHHHHCCCEEEE-----E-CCH---HHHHH--------HHHHCCCCEEEEEEE-------CCCCCHHHHHHHHHHH-CC
Q ss_conf 9999988989999-----9-997---99999--------997189989999836-------5599979999999985-89
Q gi|254780312|r 19 IKALGKAGYEVVS-----C-NNG---ASAYD--------KVREEPFSLLLTDIV-------MPEMDGIELARRATEL-DP 73 (122)
Q Consensus 19 ~~~L~~~G~~v~~-----a-~~g---~~al~--------~~~~~~~dlii~D~~-------mP~~dG~el~~~ir~~-~~ 73 (122)
-+.++..||++.. | .+| .++++ .++.+++|.|++++- .++.+| +++++||+. .|
T Consensus 52 i~~a~~~g~e~vp~~~a~A~P~G~v~~~af~~~~~eil~~lra~~~Dgv~L~LHGAmv~e~~~D~EG-~ll~~iR~~vGp 130 (495)
T 3iuu_A 52 VKTAEALGYRCVPSISARARPGGAIEQKVFDNIVDEFVQAARMQDFDAICLDLHGATLAEHTLDTEG-YLLSRLREVVGN 130 (495)
T ss_dssp HHHHHHTTCEEEEEEEEEECSEECBCHHHHHHHHHHHHHHHHHSCCSEEEEEECSCCCBSSCSSHHH-HHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCH-HHHHHHHHHCCC
T ss_conf 9999987988960053405789735899999999999999851798789995547666358889857-999999987199
Q ss_pred CCCEEEEEC-CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHHHHHHH
Q ss_conf 985999943-7978999999976998699769-79899999999996
Q gi|254780312|r 74 DLKVMFITG-FAAVALNPDSNAPKNAKVLSKP-FHLRDLVNEVNRLL 118 (122)
Q Consensus 74 ~~pii~~s~-~~~~~~~~~~~~~g~~~~l~KP-~~~~~L~~~i~~~l 118 (122)
++||.+.-. |.+.....-........|-+-| ++..+--.+..++|
T Consensus 131 ~vPI~~tlDlHaNvs~~mv~~~d~l~~yrtyPHiD~~etg~~aa~ll 177 (495)
T 3iuu_A 131 DIMISLALDLHAYLTPQMVEQATIITSFRTTPHADIEETGVRAMTLL 177 (495)
T ss_dssp TSEEEEEECTTCCCCHHHHHHCSEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 88559972534564899997387767753377738999999999999
No 221
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=40.41 E-value=20 Score=16.29 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 59989999999999988989999
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVS 31 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~ 31 (122)
-++.....-+.+.|-..|+.+..
T Consensus 18 ~~~~~~a~~~~~al~~~Gi~~iE 40 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIE 40 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 98999999999999987998899
No 222
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=40.10 E-value=20 Score=16.27 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=61.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC---------CEEE-EECCHHHHHHHHH--HCCCCEEEEEEECCCCC-------HH
Q ss_conf 8669997599899999999999889---------8999-9999799999997--18998999983655999-------79
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAG---------YEVV-SCNNGASAYDKVR--EEPFSLLLTDIVMPEMD-------GI 62 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G---------~~v~-~a~~g~~al~~~~--~~~~dlii~D~~mP~~d-------G~ 62 (122)
..+|.-||-++.+..++...|+... -.+. ...|..+.+..+. ...||+|.+|=..|... ..
T Consensus 105 G~~V~~vE~sp~~~~Ll~~~l~~a~~~~~~~~~~~ri~~~~gDa~~~l~~l~~~~~~~DvIylDPMf~~~~K~a~~kk~~ 184 (258)
T 2r6z_A 105 GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPERRKSAAVKKEM 184 (258)
T ss_dssp TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC-------------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHCCCHH
T ss_conf 99899996888999999999999996968767887557100759999999996389988899889997522310001057
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-CCCHH
Q ss_conf 99999998589985999943797899999997699869976-97989
Q gi|254780312|r 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK-PFHLR 108 (122)
Q Consensus 63 el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K-P~~~~ 108 (122)
.+++.+-... ....+....+.+.....++.| |..-.
T Consensus 185 ~~l~~l~~~~----------~d~~~ll~~Al~~a~kRVVVKRp~~a~ 221 (258)
T 2r6z_A 185 AYFHRLVGEA----------QDEVVLLHTARQTAKKRVVVKRPRLGE 221 (258)
T ss_dssp HHHHHHHSHH----------HHHHHHHHHHHHHCSSEEEEEEETTCC
T ss_pred HHHHHHHCCC----------CCHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9999874568----------888999999983379679991757686
No 223
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=39.71 E-value=20 Score=16.23 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=67.4
Q ss_pred HHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECC--CCCHHHHHHHHHHHCCCCCEEEEECCCCHHH-H
Q ss_conf 99999999988989999--99979999999718998999983655--9997999999998589985999943797899-9
Q gi|254780312|r 15 RRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMP--EMDGIELARRATELDPDLKVMFITGFAAVAL-N 89 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP--~~dG~el~~~ir~~~~~~pii~~s~~~~~~~-~ 89 (122)
..+...+|...|+++.. ..+..++.+.+....++++++=-.=. .--+-++++.+|+..++ ++++-|...... .
T Consensus 527 a~f~~n~~a~gG~e~~~~~~~t~~e~~~a~~~~~~~~~vicssd~~y~~~a~~~~~alk~~g~~--~v~lAG~p~~~~~~ 604 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAK--ALYLSGAFKEFGDD 604 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTCS--EEEEESCGGGGGGG
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCC--EEEEEECCCCCCCH
T ss_conf 8888879984484203588899899999998659988999578610688899999999966998--59997278874235
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9999769986997697989999999999603
Q gi|254780312|r 90 PDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 90 ~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
....+.|+++||.--.+.-+.+..+.+-+.+
T Consensus 605 ~~~~~agvd~fi~~g~dv~~~L~~~~~~lGv 635 (637)
T 1req_B 605 AAEAEKLIDGRLFMGMDVVDTLSSTLDILGV 635 (637)
T ss_dssp HHHHHHHCCCEECTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 6899708760501897499999999998488
No 224
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=39.35 E-value=21 Score=16.19 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=53.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 98669997599899999999999889899999-997999999971-8998999983655999799999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii 78 (122)
|+-||-||-=-..-+..+..+....++++..+ +.-.+..+.+.+ .+..-+..|+ -+++ . .+++=+|
T Consensus 1 MtlrvgiIG~G~~g~~h~~~~~~~~~~~ivav~d~~~~~~~~~a~~~~~~~~~~~~-------~ell---~--~~~iD~V 68 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDP-------HELI---E--DPNVDAV 68 (344)
T ss_dssp -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSH-------HHHH---H--CTTCCEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCH-------HHHH---C--CCCCCEE
T ss_conf 97249999971999999999972899689999898999999999983998402999-------9996---4--9998999
Q ss_pred EEECC--CCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHH
Q ss_conf 99437--97899999997699869976979--899999999
Q gi|254780312|r 79 FITGF--AAVALNPDSNAPKNAKVLSKPFH--LRDLVNEVN 115 (122)
Q Consensus 79 ~~s~~--~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~ 115 (122)
+++.. ...+...++.+.|..-|+.||+. .++..+-++
T Consensus 69 ~I~tp~~~H~~~~~~al~~gkhV~~EKP~a~~~~e~~~l~~ 109 (344)
T 3ezy_A 69 LVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIE 109 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 97163114399999999769968994572111036777777
No 225
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=38.74 E-value=21 Score=16.14 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=67.1
Q ss_pred HHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 9999999988989999--9997999999971899899998365599979-----99999998589985999943797899
Q gi|254780312|r 16 RFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATELDPDLKVMFITGFAAVAL 88 (122)
Q Consensus 16 ~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~~~~~pii~~s~~~~~~~ 88 (122)
---.+.|-+.||.|.. ..|..-|-++..-+ -..+|.+.=|--+|. ..++.|++. .++|+|+=-|.+....
T Consensus 125 l~Aa~~Lvk~gF~VlpY~~dD~~~ak~L~d~G--c~avMPlgsPIGSg~Gi~n~~~l~~i~~~-~~vpviVDAGIG~pSd 201 (265)
T 1wv2_A 125 LKAAEQLVKDGFDVMVYTSDDPIIARQLAEIG--CIAVMPLAGLIGSGLGICNPYNLRIILEE-AKVPVLVDAGVGTASD 201 (265)
T ss_dssp HHHHHHHHTTTCEEEEEECSCHHHHHHHHHSC--CSEEEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC--CEEECCCCCCCCCCCCCCCHHHHHHHHHC-CCCEEEEECCCCCHHH
T ss_conf 99999999789779624784699999987549--63754483210112463677899999853-8952997468897889
Q ss_pred HHHHHHCCCCEEEE-----CCCCHHHHHHHHHHH
Q ss_conf 99999769986997-----697989999999999
Q gi|254780312|r 89 NPDSNAPKNAKVLS-----KPFHLRDLVNEVNRL 117 (122)
Q Consensus 89 ~~~~~~~g~~~~l~-----KP~~~~~L~~~i~~~ 117 (122)
...+++.|+++.+. |-=+|....++++.+
T Consensus 202 Aa~aMElG~DaVLvNTAIa~a~dP~~MA~A~~~A 235 (265)
T 1wv2_A 202 AAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHA 235 (265)
T ss_dssp HHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
T ss_conf 9999971488898532756389989999999999
No 226
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua}
Probab=38.53 E-value=21 Score=16.12 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=56.9
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 986-69997599899999999999889899999997-9999999718998999983655999799999999858998599
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g-~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii 78 (122)
|++ ||.||-=--.-+..+..+....|+++..+.|. .++.+.+.+..+ |..+.+ +.+-+ .+++-+|
T Consensus 3 mk~~rigiIG~G~~g~~h~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~---------~~~~~~---~ell~-~~~iD~V 69 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGL---------KIYESY---EAVLA-DEKVDAV 69 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTC---------CBCSCH---HHHHH-CTTCCEE
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCC---------CCCCCH---HHHHC-CCCCCEE
T ss_conf 8877199994679999999999858995899998899999999986299---------701999---99955-9998989
Q ss_pred EEECCC--CHHHHHHHHHCCCCEEEECCCC--HHHHHH
Q ss_conf 994379--7899999997699869976979--899999
Q gi|254780312|r 79 FITGFA--AVALNPDSNAPKNAKVLSKPFH--LRDLVN 112 (122)
Q Consensus 79 ~~s~~~--~~~~~~~~~~~g~~~~l~KP~~--~~~L~~ 112 (122)
+++... ..+....+.+.|..-|+.||+. .++..+
T Consensus 70 ~i~tp~~~h~~~~~~al~~gkhv~~EKP~a~~~~e~~~ 107 (359)
T 3e18_A 70 LIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLA 107 (359)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf 98788055235678888539819995786420878878
No 227
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi strain cl brener} PDB: 3k7s_A* 3k7o_A* 3k8c_A*
Probab=38.45 E-value=20 Score=16.31 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.8
Q ss_pred CCCEEEEECCCHH--HHHHHHHHHHHCCCEEEEE
Q ss_conf 9866999759989--9999999999889899999
Q gi|254780312|r 1 MNQKILLAEDDDD--MRRFLIKALGKAGYEVVSC 32 (122)
Q Consensus 1 M~~rILiVDD~~~--~r~~l~~~L~~~G~~v~~a 32 (122)
|++||.|.-|... ..+.+...|+..||+|.-.
T Consensus 21 M~kkI~IgsDHaG~~lK~~l~~~L~~~g~ev~D~ 54 (179)
T 3k7p_A 21 MTRRVAIGTDHPAFAIHENLILYVKEAGDEFVPV 54 (179)
T ss_dssp CCEEEEEEECTGGGGGHHHHHHHHHHTCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 8881899828628999999999999869979975
No 228
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=38.19 E-value=21 Score=16.08 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=28.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 986699975998999999999998898999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
| |||||.--.=.+...+.+.|.+.||+|....
T Consensus 21 M-kkVLVTGasGfiG~~lv~~L~~~g~~V~~id 52 (333)
T 2q1w_A 21 M-KKVFITGICGQIGSHIAELLLERGDKVVGID 52 (333)
T ss_dssp C-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred C-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 7-8799907887899999999997829899997
No 229
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=37.33 E-value=22 Score=16.00 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCC--EEEEECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 986--6999759989999999999988989999999
Q gi|254780312|r 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNN 34 (122)
Q Consensus 1 M~~--rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~ 34 (122)
|++ ||||.--.=.+-..+.+.|...||+|.+...
T Consensus 1 m~~k~KILVtGatG~iG~~l~~~L~~~g~~V~~l~R 36 (313)
T 1qyd_A 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFR 36 (313)
T ss_dssp -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 989998999899848999999999978896999989
No 230
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=37.03 E-value=22 Score=15.97 Aligned_cols=63 Identities=10% Similarity=0.238 Sum_probs=30.8
Q ss_pred EEEECCCHHHHHH---HHHHHHHCCCEEEE--EC---CHHHHHHHHHH----CCCCEEEEEEECC-CCCHHHHHHH
Q ss_conf 9997599899999---99999988989999--99---97999999971----8998999983655-9997999999
Q gi|254780312|r 5 ILLAEDDDDMRRF---LIKALGKAGYEVVS--CN---NGASAYDKVRE----EPFSLLLTDIVMP-EMDGIELARR 67 (122)
Q Consensus 5 ILiVDD~~~~r~~---l~~~L~~~G~~v~~--a~---~g~~al~~~~~----~~~dlii~D~~mP-~~dG~el~~~ 67 (122)
+++|.||+..+.. -.+..++.|+.+.. .. +-++.++.+.+ ...+-|++-+-+| ..|--+++..
T Consensus 39 vIlvg~d~aS~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~LN~D~~V~GIivQlPlP~~~~~~~i~~~ 114 (285)
T 3l07_A 39 AIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYS 114 (285)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHC
T ss_conf 9995897567999999999999748858999789998899999999999646786779960676556106889860
No 231
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=36.85 E-value=19 Score=16.46 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=33.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-----HHHHHHHHH----CCCCEEEE
Q ss_conf 69997599899999999999889899999997-----999999971----89989999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-----ASAYDKVRE----EPFSLLLT 52 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g-----~~al~~~~~----~~~dlii~ 52 (122)
..||+.....-.+.+...|+..||+|....|- ..+++.+.+ ..+|++++
T Consensus 45 ~~lIinn~~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~~~~~~d~~v~ 102 (272)
T 3h11_A 45 ICLIIDCIGNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVC 102 (272)
T ss_dssp EEEEEESSCCCCSHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTCGGGGGCSEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9999789863199999999879988999618999999999999996554478877999
No 232
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET: FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Probab=36.79 E-value=23 Score=15.95 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE------EEC-CCCHHHHHHHHHHHHHCC
Q ss_conf 999999998589985999943797899999997699869------976-979899999999996036
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV------LSK-PFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~------l~K-P~~~~~L~~~i~~~l~~~ 121 (122)
++.++++++..+..|||-.-|..+.+...+.+..|++.+ +.+ |.-..++.+.+.+.|+.+
T Consensus 265 l~~v~~i~~~~~~~~IIg~GGI~s~~Da~e~i~aGAs~VQv~Tal~~~Gp~~i~~I~~~L~~~l~~~ 331 (354)
T 3gz3_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK 331 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999997699749971685999999999985999677527667509289999999999999984
No 233
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46
Probab=36.64 E-value=23 Score=15.94 Aligned_cols=66 Identities=20% Similarity=0.105 Sum_probs=38.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999759989999999999988989--9999997999999971--899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~~a~~g~~al~~~~~--~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
++|..||-|......+..-++..+.. .....+ ++.++.. .+||+|++|=--..-..-+++..+.+.
T Consensus 78 ~~v~fVE~~~~a~~~l~~N~~~~~~~~~~ii~~d---~~~~l~~~~~~fDlIflDPPY~~~~~~~~l~~l~~~ 147 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN---AMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDN 147 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC---HHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC---HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 8868999703335678878987463553599532---456554127766689976998754599999999988
No 234
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=36.25 E-value=23 Score=15.90 Aligned_cols=69 Identities=7% Similarity=-0.034 Sum_probs=38.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH-----HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 89999836559997999999998589985999943797899-----99999769986997697989999999999603
Q gi|254780312|r 48 SLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL-----NPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 48 dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~-----~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++++= ...+--|+-+++++.. .+|+|....-+-.+. .......+.++|+..|.+.++|.++|+++|+.
T Consensus 368 dv~v~p-S~~E~fgl~~lEAma~---G~PVVas~~gG~~E~i~~g~~~~~~~~~~~G~lv~~~d~~~la~ai~~~L~~ 441 (485)
T 2qzs_A 368 DVILVP-SRFEPCGLTQLYGLKY---GTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVL 441 (485)
T ss_dssp SEEEEC-CSCCSSCSHHHHHHHH---TCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCCCCCHHHHHHHHC---CCCEEEECCCCCCCEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 115698-5345787699999987---9989991899976265158644345677746996899999999999999819
No 235
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=35.77 E-value=23 Score=15.85 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=52.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHH-HHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889899999997999999971-8998999983655999799-99999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE-LARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~pii~~ 80 (122)
|.+||.--...+-..+...|-+.|+.|..+..-.+.++.+.+ ..-.+...-..+-+.+..+ +++++.+....+-+++-
T Consensus 8 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~el~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idilvn 87 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVN 87 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 98999488878999999999987999999979889999999985187179998479999999999999997499989998
Q ss_pred EC
Q ss_conf 43
Q gi|254780312|r 81 TG 82 (122)
Q Consensus 81 s~ 82 (122)
.+
T Consensus 88 nA 89 (260)
T 1nff_A 88 NA 89 (260)
T ss_dssp CC
T ss_pred CC
T ss_conf 99
No 236
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=35.60 E-value=24 Score=15.84 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=60.4
Q ss_pred CCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHHH-------HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 8669997599---89999999999988989999999799-------9999971899899998365599979999999985
Q gi|254780312|r 2 NQKILLAEDD---DDMRRFLIKALGKAGYEVVSCNNGAS-------AYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 2 ~~rILiVDD~---~~~r~~l~~~L~~~G~~v~~a~~g~~-------al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
.++|++|--| +.-.+.++..-+..|..+....++.+ |++......+|+||+|--=-.-.-.++.+++++.
T Consensus 127 ~~~V~lva~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d~~~i~~~~~~~a~~~~~D~vliDTaGR~~~~~~lm~EL~~i 206 (309)
T 2qy9_A 127 GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI 206 (309)
T ss_dssp TCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 77614864453065499999998752498377337888799999999999997699899968988776789999999999
Q ss_pred -------C---CCCCEEEEECCCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf -------8---998599994379789999999----7699869-976
Q gi|254780312|r 72 -------D---PDLKVMFITGFAAVALNPDSN----APKNAKV-LSK 103 (122)
Q Consensus 72 -------~---~~~pii~~s~~~~~~~~~~~~----~~g~~~~-l~K 103 (122)
. |.-.++++.+........++. ..+.+++ ++|
T Consensus 207 ~~~~~~~~~~~p~e~~LVlda~~g~~~~~~~~~f~~~~~~~g~IlTK 253 (309)
T 2qy9_A 207 VRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTK 253 (309)
T ss_dssp HHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 99987533678724565100323377999998623126887799954
No 237
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=35.59 E-value=10 Score=18.07 Aligned_cols=106 Identities=13% Similarity=0.013 Sum_probs=50.6
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHH-HCCCCCE
Q ss_conf 9866999759-98999999999998898999999979999999718998999983655999799-9999998-5899859
Q gi|254780312|r 1 MNQKILLAED-DDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATE-LDPDLKV 77 (122)
Q Consensus 1 M~~rILiVDD-~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~-~~~~~pi 77 (122)
|+ |+.||-- -..-+..+ ..+...|.....+.+..+.........+..-.. .+..++. .....+. ..+++-+
T Consensus 3 Mk-~~~iIG~~G~ig~~H~-~a~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~iD~ 76 (318)
T 3oa2_A 3 MK-NFALIGAAGYIAPRHM-RAIKDTGNCLVSAYDINDSVGIIDSISPQSEFF----TEFEFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CC-EEEEETTTSSSHHHHH-HHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEE----SSHHHHHHHHHHHTTSTTTSCCE
T ss_pred CC-EEEEECCCCHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHHCCCHHHHHH----HHCCCCHHHHHHHHHHCCCCCCE
T ss_conf 31-9999969988999999-999728994899994866776663150667763----22034000440887715899609
Q ss_pred EEEECCCC--HHHHHHHHHCCCCEEEECCCC--HHHHHH
Q ss_conf 99943797--899999997699869976979--899999
Q gi|254780312|r 78 MFITGFAA--VALNPDSNAPKNAKVLSKPFH--LRDLVN 112 (122)
Q Consensus 78 i~~s~~~~--~~~~~~~~~~g~~~~l~KP~~--~~~L~~ 112 (122)
|++++-+. .+....+.+.|..-|+.||+. .++..+
T Consensus 77 V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~ 115 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQ 115 (318)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 998598499999999999759919994577343036678
No 238
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductase; oxidoreductase; 1.99A {Streptomyces coelicolor A3}
Probab=35.12 E-value=24 Score=15.79 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 986699975998999999999998898999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
|+|++||.--...+-..+++.|-+.|+.|..+.
T Consensus 20 M~K~alITGas~GIG~aia~~la~~Ga~V~~~~ 52 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITY 52 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 989899947887899999999998799899998
No 239
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=34.75 E-value=24 Score=15.75 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=55.5
Q ss_pred EEEECCCHH---HHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 999759989---999999999988989999-------9997999999971899899998365599979999999985899
Q gi|254780312|r 5 ILLAEDDDD---MRRFLIKALGKAGYEVVS-------CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD 74 (122)
Q Consensus 5 ILiVDD~~~---~r~~l~~~L~~~G~~v~~-------a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~ 74 (122)
.++..|++. ..+.+...++..|+++.. ..+-...+..+.+..+|.|++- .+.-+...+++++++....
T Consensus 145 aii~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~--~~~~~~~~~~~~~~~~~~~ 222 (364)
T 3lop_A 145 GVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLG--ATAEPAAQFVRQYRARGGE 222 (364)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEE--SCHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCHHHHHHHHHHHHHHCCC
T ss_conf 99844773038899999865540484599886047777778999999982599899997--4789999999999984898
Q ss_pred CCEEEEECCCCHHHHHH
Q ss_conf 85999943797899999
Q gi|254780312|r 75 LKVMFITGFAAVALNPD 91 (122)
Q Consensus 75 ~pii~~s~~~~~~~~~~ 91 (122)
.+++..++.........
T Consensus 223 ~~~~~~~~~~~~~~~~~ 239 (364)
T 3lop_A 223 AQLLGLSSIDPGILQKV 239 (364)
T ss_dssp CEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHH
T ss_conf 76999746886999987
No 240
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=34.73 E-value=24 Score=15.75 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=48.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----HCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999759989999999999988989--99-9999799999997-----1899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVR-----EEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~-----~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
-+|.-+|-++......+..++..|+. +. ...++.+.+..+. ..+||+|++|..-.. -.+.++.+...
T Consensus 96 g~v~tie~~~~~~~~A~~~~~~ag~~~~i~~~~g~a~e~l~~l~~~~~~~~~fD~IFiDadk~~--y~~y~e~~~~l 170 (237)
T 3c3y_A 96 GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPN--YIKYHERLMKL 170 (237)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGG--HHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCHHH--HHHHHHHHHHH
T ss_conf 4899996026768999999998499813899962200001788874035777658997288888--99999999865
No 241
>3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=34.44 E-value=25 Score=15.72 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=41.2
Q ss_pred CEEEEECCCHH--HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 66999759989--9999999999889899999-------99799999997189989999836559997999999998589
Q gi|254780312|r 3 QKILLAEDDDD--MRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73 (122)
Q Consensus 3 ~rILiVDD~~~--~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~ 73 (122)
+|+|||-|... ..+.+...|...++.+... ++..++.+.+++..+|+||- + -+-+-++.++.+....
T Consensus 35 ~r~livt~~~~~~~~~~v~~~l~~~~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia-v--GGGs~iD~aK~ia~~~- 110 (353)
T 3hl0_A 35 SRALVLSTPQQKGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVS-L--GGGSTTGLGKAIALRT- 110 (353)
T ss_dssp CCEEEECCGGGHHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEE-E--ESHHHHHHHHHHHHHH-
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE-E--CCCCCCCHHHHHHHCC-
T ss_conf 86999978312137999999860688089962516999899999999999639988999-5--8863001334544136-
Q ss_pred CCCEEEE
Q ss_conf 9859999
Q gi|254780312|r 74 DLKVMFI 80 (122)
Q Consensus 74 ~~pii~~ 80 (122)
+.|.|.+
T Consensus 111 ~~~~i~~ 117 (353)
T 3hl0_A 111 DAAQIVI 117 (353)
T ss_dssp CCEEEEE
T ss_pred CCCEEEE
T ss_conf 7865774
No 242
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661}
Probab=34.18 E-value=7 Score=18.99 Aligned_cols=71 Identities=21% Similarity=0.356 Sum_probs=49.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 669997599899999999999889899--99999799999997189989999836559997999999998589985999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEV--VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v--~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
.+|.-+|.++......+..|..+|+.- ....|+.+++. ...+||.|++....|...- .+++ +..|.=.+++
T Consensus 103 g~V~~iE~~~~l~~~a~~~l~~~~~~nv~~~~gd~~~g~~--~~~~fD~I~v~~~~~~~p~-~l~~---qL~~gGrlv~ 175 (215)
T 2yxe_A 103 GLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--PLAPYDRIYTTAAGPKIPE-PLIR---QLKDGGKLLM 175 (215)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--GGCCEEEEEESSBBSSCCH-HHHH---TEEEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCEEEEECCCHHCCH-HHHH---HCCCCCEEEE
T ss_conf 7189995288999999999986156644999888655753--4688648999456101359-9998---4488938999
No 243
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=34.07 E-value=25 Score=15.69 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=41.1
Q ss_pred CCCEEEEE--CCC-HHHHHHHHHHHHHCCCEEEEECCHHH---------H--------HHHHHHCCCCEEEEEEECCCCC
Q ss_conf 98669997--599-89999999999988989999999799---------9--------9999718998999983655999
Q gi|254780312|r 1 MNQKILLA--EDD-DDMRRFLIKALGKAGYEVVSCNNGAS---------A--------YDKVREEPFSLLLTDIVMPEMD 60 (122)
Q Consensus 1 M~~rILiV--DD~-~~~r~~l~~~L~~~G~~v~~a~~g~~---------a--------l~~~~~~~~dlii~D~~mP~~d 60 (122)
|+|||||+ |.- +.-.-.....|++.|++|..++-..+ + ++-+....||++++==.++..+
T Consensus 1 M~k~vlv~l~~Gfe~~E~~~p~dvL~rag~~v~~~s~~~~~~~~V~~~~g~~i~~d~~~~d~~~~d~D~liiPGG~~~~~ 80 (205)
T 2ab0_A 1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAE 80 (205)
T ss_dssp -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEECCCCEEECCCCHHHCCCCCCCEEEECCCCHHHH
T ss_conf 99439999559910999999999999889989999771799845893799889168887889956873899899971798
Q ss_pred H----HHHHHHHHHHCC-CCCEE
Q ss_conf 7----999999998589-98599
Q gi|254780312|r 61 G----IELARRATELDP-DLKVM 78 (122)
Q Consensus 61 G----~el~~~ir~~~~-~~pii 78 (122)
- -++.+.+|+... ..++.
T Consensus 81 ~l~~~~~l~~~lr~~~~~gk~i~ 103 (205)
T 2ab0_A 81 CFRDSTLLVETVKQFHRSGRIVA 103 (205)
T ss_dssp HHHHCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCHHHHHHHHHHHHHCCEEE
T ss_conf 86129999999999987353045
No 244
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=34.05 E-value=25 Score=15.68 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=29.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 986699975998999999999998898999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
|+|++||---.=.+..-+...|-+.||+|..+.
T Consensus 23 Mkk~~LITGatGfIGs~l~~~Ll~~g~~V~~~~ 55 (375)
T 1t2a_A 23 MRNVALITGITGQDGSYLAEFLLEKGYEVHGIV 55 (375)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 987699960862899999999997849899997
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=33.77 E-value=25 Score=15.66 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=56.7
Q ss_pred CEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHHHHHH-------HHHHCCCCEEEEEEECCCCCHHHHHHHHH---
Q ss_conf 669997599---89999999999988989999999799999-------99718998999983655999799999999---
Q gi|254780312|r 3 QKILLAEDD---DDMRRFLIKALGKAGYEVVSCNNGASAYD-------KVREEPFSLLLTDIVMPEMDGIELARRAT--- 69 (122)
Q Consensus 3 ~rILiVDD~---~~~r~~l~~~L~~~G~~v~~a~~g~~al~-------~~~~~~~dlii~D~~mP~~dG~el~~~ir--- 69 (122)
+|+++|--| +.-.+.++.+-+..|..+..+.++.+.-. ..+...+|+|++|--=-.-...++..+++
T Consensus 131 ~kv~li~~Dt~R~ga~eQL~~~a~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~d~iliDTaGr~~~~~~l~~el~~~~ 210 (304)
T 1rj9_A 131 KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVK 210 (304)
T ss_dssp CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCHHHHHHHHHHHH
T ss_conf 54003421420000678999856556850796688720787789999999986999899750430310377887778888
Q ss_pred ----HH---CCCCCEEEEECCCCHHHHHHH----HHCCCCEE-EEC
Q ss_conf ----85---899859999437978999999----97699869-976
Q gi|254780312|r 70 ----EL---DPDLKVMFITGFAAVALNPDS----NAPKNAKV-LSK 103 (122)
Q Consensus 70 ----~~---~~~~pii~~s~~~~~~~~~~~----~~~g~~~~-l~K 103 (122)
.. .|.-+++++++....+...++ ...+.++. ++|
T Consensus 211 ~~~~~~~~~~p~e~~LVl~a~~~~~~~~~~~~~~~~~~~~~~IlTK 256 (304)
T 1rj9_A 211 RAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTK 256 (304)
T ss_dssp HHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 7765326789855899961103835677999987427997799972
No 246
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=33.66 E-value=25 Score=15.65 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=21.8
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHHCCCEEEEECCHH
Q ss_conf 669997--5998999999999998898999999979
Q gi|254780312|r 3 QKILLA--EDDDDMRRFLIKALGKAGYEVVSCNNGA 36 (122)
Q Consensus 3 ~rILiV--DD~~~~r~~l~~~L~~~G~~v~~a~~g~ 36 (122)
+.||+- |+|..-..-+.+.|.+.||++.+...-.
T Consensus 25 kgvliSv~d~dK~~~~~~a~~L~~lGf~i~AT~GTa 60 (143)
T 2yvq_A 25 KGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATS 60 (143)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHH
T ss_pred CCEEEEEEHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 888999867637789999999997496789735899
No 247
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=33.63 E-value=25 Score=15.64 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHCCC-CEEEEEEECCC-CCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE------C
Q ss_conf 97999999971899-89999836559-997--99999999858998599994379789999999769986997------6
Q gi|254780312|r 34 NGASAYDKVREEPF-SLLLTDIVMPE-MDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS------K 103 (122)
Q Consensus 34 ~g~~al~~~~~~~~-dlii~D~~mP~-~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~------K 103 (122)
+..+.+..+.+..+ .++++|+.--+ +.| +++++.+++ .++.|++.--|.++.+...+..+.|+++.+. +
T Consensus 152 ~~~~~~~~~~~~g~~eiiltdI~~dGt~~G~d~~~l~~i~~-~~~~pii~~GGv~s~~dl~~l~~~g~~gvivgsal~~~ 230 (253)
T 1thf_D 152 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP-LTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGG-GCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 69999999886379979999752457657754013345552-47987898469899999999997899899980487769
Q ss_pred CCCHHHHHHHHH
Q ss_conf 979899999999
Q gi|254780312|r 104 PFHLRDLVNEVN 115 (122)
Q Consensus 104 P~~~~~L~~~i~ 115 (122)
-++..++.+.+.
T Consensus 231 ~~~~~~lk~~l~ 242 (253)
T 1thf_D 231 EIDVRELKEYLK 242 (253)
T ss_dssp CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 999999999999
No 248
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=33.59 E-value=25 Score=15.64 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=52.5
Q ss_pred HHHHHHHHHH-CCCCEEEEEEECCC-CCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC------C
Q ss_conf 7999999971-89989999836559-997--999999998589985999943797899999997699869976------9
Q gi|254780312|r 35 GASAYDKVRE-EPFSLLLTDIVMPE-MDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK------P 104 (122)
Q Consensus 35 g~~al~~~~~-~~~dlii~D~~mP~-~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K------P 104 (122)
..+.+..+.+ +.-.++++|+.--+ +.| +++++.+.+ .++.|+|.--|.+..+...++.+.|+++.+.= -
T Consensus 154 ~~~~~~~~~~~g~~eiiltdi~~dGt~~G~d~~l~~~i~~-~~~~pii~sGGv~~~~dl~~l~~~g~~gvivg~al~~g~ 232 (252)
T 1ka9_F 154 AVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAE-AVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHH-HCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf 9999999987479889998623457666741679999985-169879997798999999999978997999852877699
Q ss_pred CCHHHHHHHH
Q ss_conf 7989999999
Q gi|254780312|r 105 FHLRDLVNEV 114 (122)
Q Consensus 105 ~~~~~L~~~i 114 (122)
++..++.+-+
T Consensus 233 i~~~~lk~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 9999999999
No 249
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=33.46 E-value=26 Score=15.63 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=27.3
Q ss_pred EEEECCCHHHHHHH---HHHHHHCCCEEEEE-----CCHHHHHHHHHH----CCCCEEEEEEECC
Q ss_conf 99975998999999---99999889899999-----997999999971----8998999983655
Q gi|254780312|r 5 ILLAEDDDDMRRFL---IKALGKAGYEVVSC-----NNGASAYDKVRE----EPFSLLLTDIVMP 57 (122)
Q Consensus 5 ILiVDD~~~~r~~l---~~~L~~~G~~v~~a-----~~g~~al~~~~~----~~~dlii~D~~mP 57 (122)
++.|.||+..+..+ .+..++.|+.+... .+-++.++.+.+ ...+-|++=+-+|
T Consensus 38 iIlvgdd~aS~~Yv~~K~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~LN~D~~V~GIlVQlPLP 102 (288)
T 1b0a_A 38 VVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLP 102 (288)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 99958976489999999999986596599997899999999999999984798645489856998
No 250
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=33.08 E-value=26 Score=15.59 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=54.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH----HHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCCC
Q ss_conf 9866999759989999999999988989999999799999----99718998999983655999799-999999858998
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD----KVREEPFSLLLTDIVMPEMDGIE-LARRATELDPDL 75 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~----~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~ 75 (122)
|+|-+||.--...+-..+...|-+.|+.|..+.--++.++ .+.+....++..-..+-+.+..+ +++++.+....+
T Consensus 1 MkKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 80 (256)
T 1geg_A 1 MKKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99899991665589999999999879989999798999999999999639929999942899999999999999975999
Q ss_pred CEEEEEC
Q ss_conf 5999943
Q gi|254780312|r 76 KVMFITG 82 (122)
Q Consensus 76 pii~~s~ 82 (122)
-+++-.+
T Consensus 81 DiLVnnA 87 (256)
T 1geg_A 81 DVIVNNA 87 (256)
T ss_dssp CEEEECC
T ss_pred CEEEECC
T ss_conf 7999899
No 251
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=32.95 E-value=26 Score=15.57 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=54.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6999759989999999999988989999999--79999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNN--GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~--g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
|||+.|..+ ....+.|++.|++|....+ .++..+.+ ..+|++++-.. +..+. .+-+..|++++|..+
T Consensus 7 kili~~~~~---~~~~~~l~~~~~~v~~~~~~~~ee~~~~i--~~~d~li~~~~-~~i~~-----~~l~~~~~Lk~I~~~ 75 (313)
T 2ekl_A 7 KALITDPID---EILIKTLREKGIQVDYMPEISKEELLNII--GNYDIIVVRSR-TKVTK-----DVIEKGKKLKIIARA 75 (313)
T ss_dssp EEEECSCCC---HHHHHHHHHTTCEEEECTTCCHHHHHHHG--GGCSEEEECSS-SCBCH-----HHHHHCTTCCEEEEC
T ss_pred EEEEECCCC---HHHHHHHHHCCCEEEECCCCCHHHHHHHH--CCCCEEEECCC-CCCCH-----HHHHHCCCCEEEEEC
T ss_conf 899979999---99999999779889988999999999983--89819998889-98899-----999519897799889
Q ss_pred CCCCHHHHHH-HHHCCCCEEEECCCCH
Q ss_conf 3797899999-9976998699769798
Q gi|254780312|r 82 GFAAVALNPD-SNAPKNAKVLSKPFHL 107 (122)
Q Consensus 82 ~~~~~~~~~~-~~~~g~~~~l~KP~~~ 107 (122)
+.+....... +.+.|+.-.-......
T Consensus 76 ~~G~d~id~~~~~~~~i~v~~~~g~~~ 102 (313)
T 2ekl_A 76 GIGLDNIDTEEAEKRNIKVVYAPGAST 102 (313)
T ss_dssp SSCCTTBCHHHHHHTTCEEECCTTTTH
T ss_pred CCCCCCCCCHHHHHCCEEEEECCCCCH
T ss_conf 816451651015543701563798771
No 252
>1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=32.95 E-value=26 Score=15.57 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=51.8
Q ss_pred CEEEEECCC-----HHHHHHHHHHHHHCCCEE-E-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 669997599-----899999999999889899-9-999979999999718998999983655999799999999858998
Q gi|254780312|r 3 QKILLAEDD-----DDMRRFLIKALGKAGYEV-V-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDL 75 (122)
Q Consensus 3 ~rILiVDD~-----~~~r~~l~~~L~~~G~~v-~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~ 75 (122)
+|||+|=+. ......+...|...|+.. . ......+ + ...+|+|++ ..++..++++..|+.
T Consensus 14 kkIlvVC~~G~GSS~ml~~~i~~~l~~~~i~~~~v~~~~~~~----~-~~~~DlIvs--------t~~l~~~~~~~~~~~ 80 (125)
T 1vkr_A 14 RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINN----L-PPDVDLVIT--------HRDLTERAMRQVPQA 80 (125)
T ss_dssp CEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTC----C-CTTCSEEEE--------EHHHHHHHHHHCTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEHHC----C-CCCCCEEEE--------CHHHHHHHHHHCCCC
T ss_conf 789999999965799999999999998499832788732520----7-989989998--------789989998319998
Q ss_pred CEEEEECCCCHHHHH
Q ss_conf 599994379789999
Q gi|254780312|r 76 KVMFITGFAAVALNP 90 (122)
Q Consensus 76 pii~~s~~~~~~~~~ 90 (122)
|+|.++.+-+.....
T Consensus 81 ~vi~V~n~Ld~~ei~ 95 (125)
T 1vkr_A 81 QHISLTNFLDSGLYT 95 (125)
T ss_dssp EEEEESCTTCHHHHH
T ss_pred EEEEEECCCCHHHHH
T ss_conf 399983278969999
No 253
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=32.93 E-value=26 Score=15.57 Aligned_cols=63 Identities=10% Similarity=0.134 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+.+.+.+.+++.||.+..+.+. .+.++.+.+..+|-+|+ +|.-..-+..+.+++. .+|++++
T Consensus 30 ~~i~~i~~~~~~~gy~~~l~~~~~~~~~~~~~~~~l~~~~vdgiI~---~~~~~~~~~~~~l~~~--~~pvV~~ 98 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIIL---LYSRENDRIIQYLHEQ--NFPFVLI 98 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEE---SCCBTTCHHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9999999999986999999828998899999999998379878999---7166885899999974--9998997
No 254
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=32.42 E-value=27 Score=15.52 Aligned_cols=69 Identities=25% Similarity=0.208 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHC-CCCEEEEEEECCC-CCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 979999999718-9989999836559-997--999999998589985999943797899999997699869976
Q gi|254780312|r 34 NGASAYDKVREE-PFSLLLTDIVMPE-MDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 34 ~g~~al~~~~~~-~~dlii~D~~mP~-~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K 103 (122)
+..+.++.+.+. .-.++++|+.--+ +.| +++++.+++. ++.|++.--|.+..+...+..+.|+++.+.-
T Consensus 155 ~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~l~~i~~~-~~~pii~~GGv~~~~dl~~l~~~g~~gvivg 227 (253)
T 1h5y_A 155 DAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADS-VRIPVIASGGAGRVEHFYEAAAAGADAVLAA 227 (253)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEH
T ss_conf 899999999857999899974514787687688999999985-6998899759999999999997899689885
No 255
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=31.79 E-value=27 Score=15.46 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=62.2
Q ss_pred CEEEE-ECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999-75998---99999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILL-AEDDD---DMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILi-VDD~~---~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+++.+ -+|+. .....+...+...|+++... .+-...+..+....+|.|++-. +.-+...+++.+++.
T Consensus 139 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~--~~~~~~~~~~~~~~~ 216 (346)
T 1usg_A 139 QRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGG--YYPEMGQMLRQARSV 216 (346)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEES--CHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHC
T ss_conf 226884378603455676663101057977999993488764125899999856999999936--628999999999863
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 89985999943797899999997699869976979
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~ 106 (122)
....+++..++.................+..-|+.
T Consensus 217 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 251 (346)
T 1usg_A 217 GLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKR 251 (346)
T ss_dssp TCCCEEEECGGGCCTTHHHHHGGGGTTCEEEECCC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCEEEEEECCC
T ss_conf 99874785423357155544556538179994378
No 256
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=31.56 E-value=27 Score=15.44 Aligned_cols=90 Identities=6% Similarity=-0.012 Sum_probs=45.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH--HHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHCCCCCEE
Q ss_conf 86699975998999999999998898999999979--99999971899899998365599-9799999999858998599
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA--SAYDKVREEPFSLLLTDIVMPEM-DGIELARRATELDPDLKVM 78 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~--~al~~~~~~~~dlii~D~~mP~~-dG~el~~~ir~~~~~~pii 78 (122)
...|++||.|+...+- +...|+.+.. .|+. +.|+.+.=+..+.+++. +|+- +...++..+.+..+...+|
T Consensus 29 g~~vvviD~d~~~~~~----~~~~g~~~v~-gD~td~~~L~~a~i~~a~~vii~--~~~d~~~~~~~~~~~~~~~~~~ii 101 (144)
T 2hmt_A 29 GHEVLAVDINEEKVNA----YASYATHAVI-ANATEENELLSLGIRNFEYVIVA--IGANIQASTLTTLLLKELDIPNIW 101 (144)
T ss_dssp TCCCEEEESCHHHHHT----TTTTCSEEEE-CCTTCHHHHHTTTGGGCSEEEEC--CCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEEECCHHHHHH----HHHCCCEEEE-ECCCCHHHHHHCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9919999796799999----9853974999-31788888863022349999998--188689999999999877998599
Q ss_pred EEECCCCHHHHHHHHHCCCCEE
Q ss_conf 9943797899999997699869
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKV 100 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~ 100 (122)
.. +. +........+.|++..
T Consensus 102 ~~-~~-~~~~~~~l~~~Gad~V 121 (144)
T 2hmt_A 102 VK-AQ-NYYHHKVLEKIGADRI 121 (144)
T ss_dssp EE-CC-SHHHHHHHHHHTCSEE
T ss_pred EE-EE-CHHHHHHHHHCCCCEE
T ss_conf 99-94-6888999997799999
No 257
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reductase family; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp}
Probab=31.48 E-value=28 Score=15.43 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=49.8
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHH-HHHHHHHHCCCCCE
Q ss_conf 98-669997599899999999999889899999997999999971-8998999983655999799-99999985899859
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE-LARRATELDPDLKV 77 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~pi 77 (122)
|+ .||||.--...+-..++..|.+.|++|..+..-.+.++.... ....+...-..+-+.+..+ +++++.+....+-+
T Consensus 1 M~mg~VlITGassGIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi 80 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPEL 80 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 98898999887459999999999987998999989899999999973996699985789999999999999997799569
Q ss_pred EEEE
Q ss_conf 9994
Q gi|254780312|r 78 MFIT 81 (122)
Q Consensus 78 i~~s 81 (122)
++-.
T Consensus 81 linn 84 (235)
T 3l6e_A 81 VLHC 84 (235)
T ss_dssp EEEE
T ss_pred EEEC
T ss_conf 9978
No 258
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp}
Probab=31.44 E-value=28 Score=15.42 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=65.6
Q ss_pred HHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEE------CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 99999999988989999-999799999997189989999836------55999799999999858998599994379789
Q gi|254780312|r 15 RRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIV------MPEMDGIELARRATELDPDLKVMFITGFAAVA 87 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~------mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~ 87 (122)
...+.......|..+.. +.+.+++......+ .|+|-+... ......+++.+..+. .++|+|.-+|....+
T Consensus 118 ~~~~~~~~~~~g~~v~~~v~t~~~a~~a~~~G-ad~Igv~~~~~~~~~~~~~~~~~l~~~~~~--~~ipvia~GGI~t~~ 194 (232)
T 3igs_A 118 VEALLARIHHHHLLTMADCSSVDDGLACQRLG-ADIIGTTMSGYTTPDTPEEPDLPLVKALHD--AGCRVIAEGRYNSPA 194 (232)
T ss_dssp HHHHHHHHHHTTCEEEEECCSHHHHHHHHHTT-CSEEECTTTTSSSSSCCSSCCHHHHHHHHH--TTCCEEEESCCCSHH
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHC--CCCEEEEECCCCCHH
T ss_conf 99999999754986999869999999999689-988997357787787670367889999733--782399858989999
Q ss_pred HHHHHHHCCCCEEEECC--CCHHHHHHHHHHHH
Q ss_conf 99999976998699769--79899999999996
Q gi|254780312|r 88 LNPDSNAPKNAKVLSKP--FHLRDLVNEVNRLL 118 (122)
Q Consensus 88 ~~~~~~~~g~~~~l~KP--~~~~~L~~~i~~~l 118 (122)
...++.+.|++.++.=- .++++...+..++|
T Consensus 195 d~~~~~~~GAd~V~vGsAi~~~~~i~~~~~~ai 227 (232)
T 3igs_A 195 LAAEAIRYGAWAVTVGSAITRLEHICGWYNDAL 227 (232)
T ss_dssp HHHHHHHTTCSEEEECHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECHHHCCHHHHHHHHHHHH
T ss_conf 999999869999998947759099999999999
No 259
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=30.74 E-value=28 Score=15.35 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=16.9
Q ss_pred HHHCCCCEEEEEEECCCCCHHHH
Q ss_conf 97189989999836559997999
Q gi|254780312|r 42 VREEPFSLLLTDIVMPEMDGIEL 64 (122)
Q Consensus 42 ~~~~~~dlii~D~~mP~~dG~el 64 (122)
+..+++|+|++|+ -|+.+|.+.
T Consensus 143 l~~~~~DlVLSDm-apn~sg~~v 164 (300)
T 3eld_A 143 MPTEPSDTLLCDI-GESSSNPLV 164 (300)
T ss_dssp SCCCCCSEEEECC-CCCCSSHHH
T ss_pred CCCCCCCEEEECC-CCCCCCCCC
T ss_conf 0677688898227-887787531
No 260
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=30.56 E-value=29 Score=15.33 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=52.2
Q ss_pred CEEEE-ECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999-75998---99999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILL-AEDDD---DMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILi-VDD~~---~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-+ -+|+. ...+.++..+++.|.++... .|-...+..+++..+|+|++-..- ..+...+.++.++.
T Consensus 165 k~vail~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~~~~l~~i~~~~pd~i~~~~~~-~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFY-PQDQALFMNQFMTD 243 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCC-HHHHHHHHHHHTTS
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECC-HHHHHHHHHHHHHC
T ss_conf 88999972755778999999999997598699865136533440057899873499879996027-67999999999876
Q ss_pred CCCCCEEEEECCCCHHHHHHHH
Q ss_conf 8998599994379789999999
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~ 93 (122)
..+.+++...+.........+.
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~ 265 (419)
T 3h5l_A 244 PTNSLVYLQYGASLAAFRDIAG 265 (419)
T ss_dssp CCSCEEEECSGGGSHHHHHHHG
T ss_pred CCCCEEEEECCCCCHHHHHHCC
T ss_conf 9987499964666478775230
No 261
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=30.23 E-value=29 Score=15.30 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 998999999999998898999--99997999999971899899998365599
Q gi|254780312|r 10 DDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 (122)
Q Consensus 10 D~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP~~ 59 (122)
+.....++++..|+..||.|. ...+...++..+.++.+|+. .++-.|..
T Consensus 19 e~~i~~ei~~~~Le~~Gy~V~~~~~~~~~~~~~al~~G~iDi~-~E~w~~~~ 69 (309)
T 1r9l_A 19 EETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFT-AVNWTPLH 69 (309)
T ss_dssp GGHHHHHHHHHHHHHTTCEECCCEECCHHHHHHHHHHTSSCEE-EEEEETTT
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEE-EEEECCCC
T ss_conf 8999999999999986996475147873999999986997599-84434610
No 262
>1vjg_A Putative lipase from the G-D-S-L family; 17135349, ALR1529, structural genomics, JCSG, PSI, protein structure initiative; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=30.11 E-value=28 Score=15.41 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=36.1
Q ss_pred EEEEECCCHHH----------HHHHHHHHHHCCCEEEEE---CCHHHH---HHH--------HHHCCCCEEEEEEECCC
Q ss_conf 69997599899----------999999999889899999---997999---999--------97189989999836559
Q gi|254780312|r 4 KILLAEDDDDM----------RRFLIKALGKAGYEVVSC---NNGASA---YDK--------VREEPFSLLLTDIVMPE 58 (122)
Q Consensus 4 rILiVDD~~~~----------r~~l~~~L~~~G~~v~~a---~~g~~a---l~~--------~~~~~~dlii~D~~mP~ 58 (122)
||+++-|+-.. ...+...|...|..+... .+|... +.. +...+||+|++-+..-+
T Consensus 22 rI~~iGDS~t~G~g~~~~~gw~~~l~~~l~~~~~~v~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~dlvii~~G~ND 100 (218)
T 1vjg_A 22 RICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLND 100 (218)
T ss_dssp EEEEEESHHHHTTTCTTSCHHHHHHHHHHHHTTEEEEEEEEECTTCCHHHHHHHHHHHHHTTCCTTSEEEEEEECCHHH
T ss_pred EEEEECHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 8999860552186998668789999999985499769997651588667654331578988612589988999767665
No 263
>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=30.05 E-value=5.8 Score=19.49 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=42.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE-EEEC-CCCCHHHHHHHHHH--HCCCCCEEE
Q ss_conf 6999759989999999999988989999999799999997189989999-8365-59997999999998--589985999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT-DIVM-PEMDGIELARRATE--LDPDLKVMF 79 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~-D~~m-P~~dG~el~~~ir~--~~~~~pii~ 79 (122)
||+|||--..+-..+.+.|++.|..+....+-...-+ + ..+|.|++ --.+ +..+. .....+.+ .....|++-
T Consensus 15 ~i~iiD~g~~~~~~i~r~L~~lG~~~~vv~~~~~~~~-l--~~~dgiIl~GG~~~~~~~~-~~~~~l~~~~~~~~~PiLG 90 (212)
T 2a9v_A 15 KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSE-L--DGLDGLVLSGGAPNIDEEL-DKLGSVGKYIDDHNYPILG 90 (212)
T ss_dssp BEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGG-G--TTCSEEEEEEECSCGGGTG-GGHHHHHHHHHHCCSCEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHH-H--HCCCEEEECCCCCCCCCCH-HHHHHHHHHHHHCCCCEEE
T ss_conf 7999999876899999999978983899969799999-8--3699199979998434343-7899999999857998998
Q ss_pred E
Q ss_conf 9
Q gi|254780312|r 80 I 80 (122)
Q Consensus 80 ~ 80 (122)
+
T Consensus 91 I 91 (212)
T 2a9v_A 91 I 91 (212)
T ss_dssp E
T ss_pred E
T ss_conf 7
No 264
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=30.04 E-value=29 Score=15.28 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCC--CH----------H-HHHHHHHHHCCCCCEE
Q ss_conf 999999999998898999-99997999999971899899998365599--97----------9-9999999858998599
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM--DG----------I-ELARRATELDPDLKVM 78 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~--dG----------~-el~~~ir~~~~~~pii 78 (122)
.+.+.+.. ..+.|+.+. |+.+..++.....- .+++|. ++.|.. .| . ++++.+++..+++|++
T Consensus 102 e~~~~v~~-a~~~gl~~IvCvge~~e~~~~~~l-~~~iIa--yEp~waIGtg~~~~~~~~~~i~~~i~~ik~~~~~v~vl 177 (226)
T 1w0m_A 102 DLARLVAK-AKSLGLDVVVCAPDPRTSLAAAAL-GPHAVA--VEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVI 177 (226)
T ss_dssp HHHHHHHH-HHHTTCEEEEEESSHHHHHHHHHT-CCSEEE--ECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHH-HHHCCCEEEEECCCCHHHHHHCCC-CCEEEE--EEEHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 06899999-998899899975871998863036-870899--83020014887888655899999999985017881599
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHH
Q ss_conf 994379789999999769986997-----6979899999999996
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLS-----KPFHLRDLVNEVNRLL 118 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~L~~~i~~~l 118 (122)
.=.|....+....+.+.|++++|. |+-++...+..+.+.|
T Consensus 178 yGGgV~~~n~~~~~~~~g~DGvLVGsA~l~a~d~~~~i~~l~~~l 222 (226)
T 1w0m_A 178 TGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPL 222 (226)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 965747667999985589958998424305889899999999999
No 265
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=29.87 E-value=29 Score=15.26 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=56.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHH------------------------------------HHC
Q ss_conf 66999759989999999999988989-99999979999999------------------------------------718
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKV------------------------------------REE 45 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v~~a~~g~~al~~~------------------------------------~~~ 45 (122)
.+|.+.|+......-....|...||+ |.....|..++... ...
T Consensus 64 ~~iVlyd~~~~~a~raa~~L~~~G~~~V~vL~GG~~~W~~ag~~~~~~~~~~~~~~~e~v~~~~~~~~i~~~el~~~~~~ 143 (539)
T 1yt8_A 64 TPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRDVNVPSKAFGELVEAERHTPSLAAEEVQALLDA 143 (539)
T ss_dssp SCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCSSSHHHHHHHHHHHHHHCCCEECHHHHHHHHHT
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 86999979898799999999975998778846857999976998644556666676430013367764679999999865
Q ss_pred CCCEEEEEEECCC------------CCHHHHHHHHHHH--CCCCCEEEEECCCCHHHHH--HHHHCCC
Q ss_conf 9989999836559------------9979999999985--8998599994379789999--9997699
Q gi|254780312|r 46 PFSLLLTDIVMPE------------MDGIELARRATEL--DPDLKVMFITGFAAVALNP--DSNAPKN 97 (122)
Q Consensus 46 ~~dlii~D~~mP~------------~dG~el~~~ir~~--~~~~pii~~s~~~~~~~~~--~~~~~g~ 97 (122)
..+.+|+|.+=|. +.+-++...+.+. +++.|||+.-+.+...... .....|.
T Consensus 144 ~~~~vilD~R~~~Ey~~ghIPgA~~iP~~el~~~~~~l~~~~~~~ivv~C~~g~rs~~~~~~L~~~G~ 211 (539)
T 1yt8_A 144 RAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGI 211 (539)
T ss_dssp TCSEEEEECSCHHHHHHSBCTTCEECCGGGHHHHHHHHCCSTTSEEEEECSSSHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99869970686665524656877352599999999965899998399978986305999999998488
No 266
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=29.84 E-value=29 Score=15.26 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCCCHH
Q ss_conf 98999999999998898999999-97999999971899899998365599979
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVSCN-NGASAYDKVREEPFSLLLTDIVMPEMDGI 62 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~a~-~g~~al~~~~~~~~dlii~D~~mP~~dG~ 62 (122)
...+..+++..|+..||+|.... +...++..+.++..|+.. +.-+|.....
T Consensus 19 ~~~~a~i~~~vLe~~Gy~Ve~~~~~~~~~~~al~~GdID~~~-e~W~p~~~~~ 70 (298)
T 2rin_A 19 ITATTATATTILEALGYETDVKVLSVPVTYTSLKNKDIDVFL-GNWMPTMEAD 70 (298)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHTSCCEEE-EEEETTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEE-ECCCCCCHHH
T ss_conf 999999999999986992489868709999999879980884-0466400166
No 267
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=29.78 E-value=29 Score=15.25 Aligned_cols=77 Identities=18% Similarity=0.081 Sum_probs=46.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8669997599899999999999889899999-997999999971899899998365599979999999985899859999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
..+|.-+|-|+...+..+.-....|...... .+..+ ....++||+|+..+..... .+++..+.+.-..--.+++
T Consensus 142 G~~V~aiDid~~av~~a~~N~~~N~v~~~~~~~~~~~---~~~~~~fDlIvaNi~~~~l--~~l~~~l~~~LkpgG~Lil 216 (254)
T 2nxc_A 142 GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLVANLYAELH--AALAPRYREALVPGGRALL 216 (254)
T ss_dssp TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEEEECCHHHH--HHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHH---CCCCCCCCEEEEEEEHHHH--HHHHHHHHHHCCCCCEEEE
T ss_conf 9989999887278899999899709944999874345---1645786689998100656--8899999985688859999
Q ss_pred ECC
Q ss_conf 437
Q gi|254780312|r 81 TGF 83 (122)
Q Consensus 81 s~~ 83 (122)
||.
T Consensus 217 SGi 219 (254)
T 2nxc_A 217 TGI 219 (254)
T ss_dssp EEE
T ss_pred EEC
T ss_conf 957
No 268
>2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X*
Probab=29.68 E-value=30 Score=15.24 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=52.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH---CCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 986699975998999999999998---89899999997--9999999718998999983655999799999999858998
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGK---AGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDL 75 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~---~G~~v~~a~~g--~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~ 75 (122)
|+=||=||-=-..-+..+ ..|.. .++++....+. +.+-+..++....-+..|+ + .+-+ .+++
T Consensus 1 M~ik~giIG~G~~g~~~~-~~l~~~~~~~~~l~~v~d~~~~~~~~~a~~~~~~~~~~~~--------~---~ll~-~~~i 67 (334)
T 2o4u_X 1 MALRWGIVSVGLISSDFT-AVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSY--------E---ELAK-DPNV 67 (334)
T ss_dssp -CEEEEEECCSHHHHHHH-HHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSEEESSH--------H---HHHT-CTTC
T ss_pred CCEEEEEECCCHHHHHHH-HHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEECCH--------H---HHHC-CCCC
T ss_conf 966799999939999999-9998585888599999879999999999983998254899--------9---9956-9999
Q ss_pred CEEEEECC--CCHHHHHHHHHCCCCEEEECCCC--HHHHHHH
Q ss_conf 59999437--97899999997699869976979--8999999
Q gi|254780312|r 76 KVMFITGF--AAVALNPDSNAPKNAKVLSKPFH--LRDLVNE 113 (122)
Q Consensus 76 pii~~s~~--~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~ 113 (122)
=++++.+. ...+....+.+.|..-|+.||+. .+++.+-
T Consensus 68 D~v~I~tp~~~h~~~~~~al~~gkhVl~EKP~~~~~~e~~~l 109 (334)
T 2o4u_X 68 EVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREM 109 (334)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCHHHH
T ss_conf 889990565411477899998699188469862122210234
No 269
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=29.65 E-value=30 Score=15.24 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=50.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCC------CHHHHHHHHHH
Q ss_conf 669997599899999999999889-----8999-99997999999971899899998365599------97999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG-----YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM------DGIELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G-----~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~------dG~el~~~ir~ 70 (122)
++|-+||=|+.+.+...+.+...+ =++. ...||.+.+... +..||+|++|..=|.. -..|+.+.+++
T Consensus 115 ~~v~~VEID~~Vi~~a~~~~~~~~~~~~d~rv~ii~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~~L~t~eFy~~~~~ 193 (296)
T 1inl_A 115 EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYD 193 (296)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-SSCEEEEEEEC----------CCSHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7178863578999999987676224336996089961489999747-887768999089865442011167999999998
Q ss_pred HCCCCCEEEE
Q ss_conf 5899859999
Q gi|254780312|r 71 LDPDLKVMFI 80 (122)
Q Consensus 71 ~~~~~pii~~ 80 (122)
.-.+--+++.
T Consensus 194 ~L~~~Gi~v~ 203 (296)
T 1inl_A 194 ALKEDGVFSA 203 (296)
T ss_dssp HEEEEEEEEE
T ss_pred HHCCCCEEEE
T ss_conf 6089969998
No 270
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=29.43 E-value=30 Score=15.22 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 98669997599---89999999999988989999999
Q gi|254780312|r 1 MNQKILLAEDD---DDMRRFLIKALGKAGYEVVSCNN 34 (122)
Q Consensus 1 M~~rILiVDD~---~~~r~~l~~~L~~~G~~v~~a~~ 34 (122)
|+|||+|+=-| ..-.......|++.||+|..++.
T Consensus 22 M~kkVaill~dgf~~~E~~~p~~~l~~aG~~v~~vs~ 58 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEK 58 (193)
T ss_dssp CCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9877999957976299999999999968998999967
No 271
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=29.41 E-value=30 Score=15.21 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9999999999889899999997-------99999997189989999836559997999999998589985999943
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNG-------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g-------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
+.+.+...+++.||.+....+. .++++.+.++.+|-+|+ +|....-+.++.+++ ..+|++++..
T Consensus 26 l~~gi~~~a~~~g~~l~v~~~~~~d~~~~~~~i~~l~~~~vdgiIi---~~~~~~~~~~~~l~~--~~iPvV~i~~ 96 (290)
T 3clk_A 26 ILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILL---LSIALTDDNLQLLQS--SDVPYCFLSM 96 (290)
T ss_dssp HHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEE---ESCC----CHHHHHC--C--CEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE---EECCCCHHHHHHHHH--CCCCEECCCC
T ss_conf 9999999999859989999689999999999999998669878999---713345599999986--3786321466
No 272
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=29.26 E-value=30 Score=15.20 Aligned_cols=69 Identities=20% Similarity=0.076 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEECCC------------CCHHHHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHCCCC
Q ss_conf 99799999997189989999836559------------9979999999985899859999437978--999999976998
Q gi|254780312|r 33 NNGASAYDKVREEPFSLLLTDIVMPE------------MDGIELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNA 98 (122)
Q Consensus 33 ~~g~~al~~~~~~~~dlii~D~~mP~------------~dG~el~~~ir~~~~~~pii~~s~~~~~--~~~~~~~~~g~~ 98 (122)
-|.+++.+++.+ .+.+++|++=|. ..--++...+.+..++.+||++...+.. .......+.|..
T Consensus 7 Is~~e~~~~l~~--~~~~liDvR~~~e~~~ghI~gai~ip~~~l~~~~~~~~~~~~ii~~c~~g~~s~~~a~~l~~~G~~ 84 (108)
T 1gmx_A 7 INVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYD 84 (108)
T ss_dssp ECHHHHHHHHHT--TCCEEEECSCHHHHHHCEETTCEECCHHHHHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCS
T ss_pred ECHHHHHHHHHC--CCEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 789999999978--990899778889997288788646752216998765324687047889985899999999984995
Q ss_pred E-EEEC
Q ss_conf 6-9976
Q gi|254780312|r 99 K-VLSK 103 (122)
Q Consensus 99 ~-~l~K 103 (122)
. |..+
T Consensus 85 ~v~~l~ 90 (108)
T 1gmx_A 85 VVYSID 90 (108)
T ss_dssp SEEEET
T ss_pred CEEEEC
T ss_conf 779852
No 273
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomics; HET: ADN; 1.40A {Thermus thermophilus HB8} SCOP: c.2.1.2
Probab=29.23 E-value=30 Score=15.19 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=30.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 986699975998999999999998898999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
|+|++||.--...+-..+...|.+.|++|..+.
T Consensus 1 M~K~alITGas~GIG~a~A~~la~~Ga~V~i~~ 33 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYRVVVLD 33 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 997999978988899999999998799999997
No 274
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=29.15 E-value=30 Score=15.19 Aligned_cols=59 Identities=7% Similarity=-0.085 Sum_probs=45.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC---CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH
Q ss_conf 669997599899999999999889---8999-9999799999997189989999836559997
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG---YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G---~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG 61 (122)
.+|.-||-|+......+.-+...+ -.+. ...|+.+.+..+....+|+|++|=--.+.+|
T Consensus 116 ~~V~~vE~d~~~~~~A~~N~~~~~~~~~~v~~~~~D~~~~l~~~~~~~~d~v~~DPaRR~~~~ 178 (410)
T 3ll7_A 116 SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGAD 178 (410)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCEEC----
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 989999589999999998489872678826999666888875346777888997662334467
No 275
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=28.93 E-value=31 Score=15.16 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=62.7
Q ss_pred EEEEEC----CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEE--------------CCCCCHHH
Q ss_conf 699975----9989999999999988989999--999799999997189989999836--------------55999799
Q gi|254780312|r 4 KILLAE----DDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIV--------------MPEMDGIE 63 (122)
Q Consensus 4 rILiVD----D~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~--------------mP~~dG~e 63 (122)
.+++|| ....+.+.++.+-..++..|.. +.+.+.|..++..+ -|.|.+.+. .|-.+...
T Consensus 158 d~ivID~Ahg~s~~~~~~ik~~k~~~~v~VIaGNV~T~e~a~~L~~aG-AD~VkVGiG~Gs~CtTr~~tGvG~Pq~sav~ 236 (400)
T 3ffs_A 158 DVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG-ADGIKVGIGPGSICTTRIVAGVGVPQITAIE 236 (400)
T ss_dssp SEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTT-CSEEEECC---------CCSCBCCCHHHHHH
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 779754655432106789999886379639994217899999999809-9856540327845666530367744799999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 999999858998599994379789999999769986997
Q gi|254780312|r 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 64 l~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
-+.... .....|||.=-|........+|+..|++..+.
T Consensus 237 ~~a~~~-~~~~v~iIADGGi~~~GDi~KAla~GAd~VMl 274 (400)
T 3ffs_A 237 KCSSVA-SKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHH-TTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHH-HHCCCCEEECCCCCCCCHHHHHHHCCCCHHHH
T ss_conf 999999-86599789537857687399998718735333
No 276
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=28.92 E-value=31 Score=15.16 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=39.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 6999759989999999999988989999999799999997189989999836
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~ 55 (122)
.|.-.|-+..-...+...++.+|..+.....-...+.......||.|++|.-
T Consensus 128 ~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d~~~l~~~~~~~fD~ILvDaP 179 (464)
T 3m6w_A 128 LLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCEEEECCC
T ss_conf 5762243178888898888861886168723224332046664437984487
No 277
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V}
Probab=28.71 E-value=31 Score=15.14 Aligned_cols=98 Identities=12% Similarity=0.198 Sum_probs=49.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 699975998999999999998898999999979-9999997189989999836559997999999998589985999943
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA-SAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~-~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
|+=||-=-..-+..+..+....++++..+.|.. +..+.+.+ .+++ |. -++-.+.+-+ .+++-+|+++.
T Consensus 7 k~giIG~G~i~~~h~~~l~~~~~~~v~~v~d~~~~~~~~~a~-~~~~-------~~--~~~~~~~ll~-~~~~D~V~I~t 75 (329)
T 3evn_A 7 RYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN-KYHL-------PK--AYDKLEDMLA-DESIDVIYVAT 75 (329)
T ss_dssp EEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC----CCCC-------SC--EESCHHHHHT-CTTCCEEEECS
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH-HCCC-------CC--EECCHHHHHC-CCCCCEEEECC
T ss_conf 899998849999999999868992899998899999999999-8599-------80--6689999962-88988899058
Q ss_pred CC--CHHHHHHHHHCCCCEEEECCC--CHHHHHH
Q ss_conf 79--789999999769986997697--9899999
Q gi|254780312|r 83 FA--AVALNPDSNAPKNAKVLSKPF--HLRDLVN 112 (122)
Q Consensus 83 ~~--~~~~~~~~~~~g~~~~l~KP~--~~~~L~~ 112 (122)
-+ ..+...++.+.|..-|+.||+ +.+++.+
T Consensus 76 p~~~H~~~~~~al~~gk~vl~EKP~a~~~~e~~~ 109 (329)
T 3evn_A 76 INQDHYKVAKAALLAGKHVLVEKPFTLTYDQANE 109 (329)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf 2665557789999879989997245455899865
No 278
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreductase; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=28.68 E-value=31 Score=15.14 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=63.6
Q ss_pred HHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEE-------ECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99999988989999-99979999999718998999983-------65599979999999985899859999437978999
Q gi|254780312|r 18 LIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDI-------VMPEMDGIELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 18 l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~-------~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
+...+...|..+.. +.+.++|....+. ..|.++..- .-+....+.++.++++ ..++|+|.--|..+....
T Consensus 110 ~i~~~~~~g~~v~~~v~s~~~A~~a~~~-G~D~li~qG~eaGGh~g~~~~~~~~L~~~v~~-~~~iPviaAGGI~~g~~i 187 (328)
T 2gjl_A 110 HIAEFRRHGVKVIHKCTAVRHALKAERL-GVDAVSIDGFECAGHPGEDDIPGLVLLPAAAN-RLRVPIIASGGFADGRGL 187 (328)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHT-TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHT-TCCSCEEEESSCCSHHHH
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHH-CCCCCEECCCCCCCCCCCCCCCHHHHHHHHHH-HCCCCEEECCCCCCHHHH
T ss_conf 9999987698899960779999999982-99921202776666778775416675899987-337867713665666999
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9999769986997
Q gi|254780312|r 90 PDSNAPKNAKVLS 102 (122)
Q Consensus 90 ~~~~~~g~~~~l~ 102 (122)
..++..|++....
T Consensus 188 aaal~lGA~gV~~ 200 (328)
T 2gjl_A 188 VAALALGADAINM 200 (328)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHCCCCHHEE
T ss_conf 9998439512056
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=28.62 E-value=31 Score=15.13 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=62.5
Q ss_pred CCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHC----C
Q ss_conf 8669997599---899999999999889899999997999999971-8998999983655999799999999858----9
Q gi|254780312|r 2 NQKILLAEDD---DDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELD----P 73 (122)
Q Consensus 2 ~~rILiVDD~---~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~----~ 73 (122)
+++|.+|.-| ..-.+.++.+-+..|..+..+.+..+.-..+.. ..+|+||+|.-=-.-.-.++.+++++.. +
T Consensus 134 ~~~v~lit~Dt~R~~A~eQLk~~a~~l~vp~~~~~~~~~l~~a~~~~~~~d~vlIDTaGr~~~~~~~~~eL~~~~~~~~~ 213 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESS 213 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99069998079976899999999974179850455566699999872248889996888431222179999997513168
Q ss_pred CCCEEEEECCCCHHHHHHHHH----CCCCE-EEEC
Q ss_conf 985999943797899999997----69986-9976
Q gi|254780312|r 74 DLKVMFITGFAAVALNPDSNA----PKNAK-VLSK 103 (122)
Q Consensus 74 ~~pii~~s~~~~~~~~~~~~~----~g~~~-~l~K 103 (122)
...++++++........+... .+.++ .++|
T Consensus 214 ~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lilTK 248 (296)
T 2px0_A 214 IQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTK 248 (296)
T ss_dssp EEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEEC
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 61699975787613599999996169998899981
No 280
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=28.50 E-value=31 Score=15.12 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986-69997599899999999999889899999997--999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g--~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+| |+-||-=-...+..+..+....++++..+.+. +.+-....+....-+ .+.+ +++-+ .+++=+
T Consensus 3 m~kir~giIG~G~i~~~h~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~--------~~~~---~~ll~-~~~iD~ 70 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVA--------YGSY---EELCK-DETIDI 70 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCC--------BSSH---HHHHH-CTTCSE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEE--------CCCH---HHHHC-CCCCCE
T ss_conf 88858999988399999999997489928999988999999999998399804--------1999---99954-899998
Q ss_pred EEEECCCC--HHHHHHHHHCCCCEEEECCCC--HHHHHH
Q ss_conf 99943797--899999997699869976979--899999
Q gi|254780312|r 78 MFITGFAA--VALNPDSNAPKNAKVLSKPFH--LRDLVN 112 (122)
Q Consensus 78 i~~s~~~~--~~~~~~~~~~g~~~~l~KP~~--~~~L~~ 112 (122)
+++++-.. .+....+.+.|..-|+.||+. .++..+
T Consensus 71 V~I~tp~~~H~~~~~~al~~gk~v~~EKPl~~~~~e~~~ 109 (330)
T 3e9m_A 71 IYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEE 109 (330)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH
T ss_conf 998997076899999999859957640321122567788
No 281
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=28.46 E-value=31 Score=15.11 Aligned_cols=53 Identities=8% Similarity=0.143 Sum_probs=43.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE---EE-EECCHHHHHHHHHH--CCCCEEEEEEE
Q ss_conf 66999759989999999999988989---99-99997999999971--89989999836
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE---VV-SCNNGASAYDKVRE--EPFSLLLTDIV 55 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~---v~-~a~~g~~al~~~~~--~~~dlii~D~~ 55 (122)
++|.-||=++.......+-++..|+. +. ...|..+.+..+.. ..||+|++|--
T Consensus 244 ~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~i~~d~~~~l~~~~~~~~~fD~IilDPP 302 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPP 302 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 75999989899999999999982998434578942299999999875359998998783
No 282
>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ...
Probab=28.06 E-value=32 Score=15.07 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=25.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH
Q ss_conf 986699975998999999999998898999999979
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA 36 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~ 36 (122)
|-+||||+.--+.-.++++ .++++|+++....+-.
T Consensus 1 m~~kvLianrGeiA~riir-a~relGi~tVav~s~~ 35 (449)
T 2w70_A 1 MLDKIVIANRGEIALRILR-ACKELGIKTVAVHSSA 35 (449)
T ss_dssp CCSEEEECCCHHHHHHHHH-HHHHHTCEEEEEEEGG
T ss_pred CCCEEEEECCCHHHHHHHH-HHHHCCCCEEEECCHH
T ss_conf 9641999897399999999-9998699399983704
No 283
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; mannac-6-P epimerase, NANE, structural genomics, protein structure initiative; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=27.98 E-value=32 Score=15.06 Aligned_cols=87 Identities=8% Similarity=0.032 Sum_probs=55.4
Q ss_pred EECCHHHHHHHHHHCCCCEEEEEEEC---------CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 99997999999971899899998365---------599979999999985899859999437978999999976998699
Q gi|254780312|r 31 SCNNGASAYDKVREEPFSLLLTDIVM---------PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL 101 (122)
Q Consensus 31 ~a~~g~~al~~~~~~~~dlii~D~~m---------P~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l 101 (122)
...+..++...... ..|.+..-..- +....++++.++++. -++|++.-.|....+...++.+.|++..+
T Consensus 125 ~~~t~~~a~~~~~~-g~d~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~iPvia~GGI~t~ed~~~al~~GAdgV~ 202 (223)
T 1y0e_A 125 DIATVEEAKNAARL-GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS-VDAKVIAEGNVITPDMYKRVMDLGVHCSV 202 (223)
T ss_dssp ECSSHHHHHHHHHT-TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH-CCSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 87999999999975-99969976778853356887655479999999842-89978986898999999999986999999
Q ss_pred EC-CC-CHHHHHHHHHHHHH
Q ss_conf 76-97-98999999999960
Q gi|254780312|r 102 SK-PF-HLRDLVNEVNRLLT 119 (122)
Q Consensus 102 ~K-P~-~~~~L~~~i~~~l~ 119 (122)
.= .+ ++.++.+++.++|+
T Consensus 203 vGsAi~~p~~~~~~fv~a~~ 222 (223)
T 1y0e_A 203 VGGAITRPKEITKRFVQVME 222 (223)
T ss_dssp ECHHHHCHHHHHHHHHHTTC
T ss_pred ECHHHCCHHHHHHHHHHHHH
T ss_conf 84211798999999999972
No 284
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=27.80 E-value=32 Score=15.04 Aligned_cols=69 Identities=10% Similarity=-0.012 Sum_probs=39.2
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH-----HHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 899998365599979999999985899859999437978999-----9999769986997697989999999999603
Q gi|254780312|r 48 SLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALN-----PDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 48 dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~-----~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|+++.-. ..+--|+-+++++.. .+|+|..-.-+-.+.. ......+.++|+.+|.+.++|.++|+++|+.
T Consensus 367 Dv~v~pS-~~E~fgl~~lEAma~---G~PvIas~~gg~~E~I~dg~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~ 440 (485)
T 1rzu_A 367 DAIIIPS-RFEPCGLTQLYALRY---GCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRY 440 (485)
T ss_dssp SEEEECC-SCCSSCSHHHHHHHH---TCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHH
T ss_pred CCCCCCC-CHHCCCHHHHHHHHC---CCCEEECCCCCCCCEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 2435882-141157899999986---9989994799864045358754224578734997899999999999999837
No 285
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=27.66 E-value=32 Score=15.03 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=61.9
Q ss_pred HHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEE----------------ECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999988989999-99979999999718998999983----------------65599979999999985899859999
Q gi|254780312|r 18 LIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDI----------------VMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 18 l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~----------------~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+...+...|..|.. +.+..+|....+ ..+|.++..- ..|...-+.++.++++. .++|+|.-
T Consensus 137 ~i~~lk~~g~~v~~~v~s~~~a~~a~~-~g~D~iv~qG~eAGGH~g~~~~~~~~~~~~~~~~~l~~~v~~~-~~iPviaA 214 (369)
T 3bw2_A 137 VIARLRRAGTLTLVTATTPEEARAVEA-AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA-VDIPVVAA 214 (369)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH-CSSCEEEE
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCEEEE
T ss_conf 999999769559850588999999998-1898444105556778887766443444441088899999975-69978962
Q ss_pred ECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 4379789999999769986997
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
-|..+......++..|++....
T Consensus 215 GGI~~g~~iaaaLalGAdgV~~ 236 (369)
T 3bw2_A 215 GGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHCCCCEEEE
T ss_conf 4777999999999539787998
No 286
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=27.43 E-value=32 Score=15.00 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=40.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEE
Q ss_conf 6999759989999999999988989999--999799999997189989999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLT 52 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~ 52 (122)
||=++..+......+...|.+.|+.|.. ++++.+..+.+.++..|+-..
T Consensus 42 ~IG~~~~~~~~~~~~~~~~kk~Gl~Ve~~~F~d~~~~~~AL~~G~ID~~~~ 92 (295)
T 1p99_A 42 TIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAF 92 (295)
T ss_dssp EEEESSSCCHHHHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEC
T ss_conf 999679838999999999997598899998178277999997599676751
No 287
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=27.40 E-value=32 Score=15.00 Aligned_cols=66 Identities=6% Similarity=0.014 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCC------CC------HHHHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHCCCCE
Q ss_conf 9799999997189989999836559------99------79999999985899859999437978--9999999769986
Q gi|254780312|r 34 NGASAYDKVREEPFSLLLTDIVMPE------MD------GIELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAK 99 (122)
Q Consensus 34 ~g~~al~~~~~~~~dlii~D~~mP~------~d------G~el~~~ir~~~~~~pii~~s~~~~~--~~~~~~~~~g~~~ 99 (122)
++++..+.+.+.. +++|+|++-|. +. --++..++.+..++.+++++-..+.. .......+.|...
T Consensus 5 t~~el~~~l~~~~-~~~liDvR~~~e~~~~hi~ga~~ip~~~l~~~~~~l~~~~~iv~~C~~G~rS~~aa~~L~~~G~~~ 83 (100)
T 3foj_A 5 TVTELKEKILDAN-PVNIVDVRTDQETAMGIIPGAETIPMNSIPDNLNYFNDNETYYIICKAGGRSAQVVQYLEQNGVNA 83 (100)
T ss_dssp CHHHHHHGGGSSS-CCEEEECSCHHHHTTCBCTTCEECCGGGGGGCGGGSCTTSEEEEECSSSHHHHHHHHHHHTTTCEE
T ss_pred CHHHHHHHHHCCC-CEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCE
T ss_conf 9999999987799-829997987899971947874548403445530136665536998699869999999999869987
Q ss_pred E
Q ss_conf 9
Q gi|254780312|r 100 V 100 (122)
Q Consensus 100 ~ 100 (122)
+
T Consensus 84 ~ 84 (100)
T 3foj_A 84 V 84 (100)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 288
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=27.37 E-value=33 Score=15.00 Aligned_cols=39 Identities=5% Similarity=-0.069 Sum_probs=19.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHCCCCEEE
Q ss_conf 999999985899859999437978--999999976998699
Q gi|254780312|r 63 ELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAKVL 101 (122)
Q Consensus 63 el~~~ir~~~~~~pii~~s~~~~~--~~~~~~~~~g~~~~l 101 (122)
++-+.+.+..++.++++..+.+.. .........|...+-
T Consensus 45 ~l~~~~~~l~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~ 85 (103)
T 3eme_A 45 TIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVN 85 (103)
T ss_dssp GGGGCGGGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 22110011047963999949997999999999985998899
No 289
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A
Probab=27.36 E-value=33 Score=15.00 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHH-HHHHHHHHCCCCCEEE
Q ss_conf 8669997599899999999999889899999997999999971-8998999983655999799-9999998589985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE-LARRATELDPDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~pii~ 79 (122)
+|++||.--...+-..++..|-+.|+.|.....-++.++.+.+ ...++...-..+-+.+..+ +++.+.+....+-+++
T Consensus 27 gK~alVTGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLV 106 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILV 106 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99899938786899999999998799999997999999999998399779999017999999999999999809983999
Q ss_pred EEC
Q ss_conf 943
Q gi|254780312|r 80 ITG 82 (122)
Q Consensus 80 ~s~ 82 (122)
-.+
T Consensus 107 nnA 109 (266)
T 3grp_A 107 NNA 109 (266)
T ss_dssp ECC
T ss_pred ECC
T ss_conf 899
No 290
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=27.26 E-value=33 Score=14.99 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=17.3
Q ss_pred HHHHHH-HHHCCCCCEEEEECCCC--HHHHHHHHHCCCC
Q ss_conf 999999-98589985999943797--8999999976998
Q gi|254780312|r 63 ELARRA-TELDPDLKVMFITGFAA--VALNPDSNAPKNA 98 (122)
Q Consensus 63 el~~~i-r~~~~~~pii~~s~~~~--~~~~~~~~~~g~~ 98 (122)
++..+. ....++.||+++-..+. ........+.|..
T Consensus 40 ~l~~~~~~~l~~~~~Iv~~C~~g~rs~~aa~~L~~~G~~ 78 (106)
T 3hix_A 40 DLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFE 78 (106)
T ss_dssp GHHHHHHHHSCTTSCEEEECSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 764421866599984999999982999999999982985
No 291
>3cni_A Putative ABC type-2 transporter; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima MSB8}
Probab=27.23 E-value=33 Score=14.98 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=43.7
Q ss_pred CEEEEECCC-HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 669997599-89999999999988989999999799999997189989999836559997999999998
Q gi|254780312|r 3 QKILLAEDD-DDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~-~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
.||=|||.| ....+.+...|+..++-+....|-++|.+.++++.++.++. .| .||+ +.+..
T Consensus 11 ~kiaivd~D~s~~s~~~~~~L~~~~~~~~~~~d~~eA~~~l~~g~~~~viv---IP--~~Fs--~~l~~ 72 (156)
T 3cni_A 11 QKVAIVREDTGTIAELAEKALGNMVDIVYAGSDLKEAEEAVKKEKAPAIIV---IP--KGFS--QSLES 72 (156)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHTSSEEEEEESCHHHHHHHHHHHTCSEEEE---EC--TTHH--HHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEE---EC--CCHH--HHHHC
T ss_conf 859999899997999999986169965899799999999998398679999---88--3478--99877
No 292
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=27.12 E-value=33 Score=14.97 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEECC---------CCCH------HHHHHHHHH--HCCCCCEEEEECCC--CHHHHHHHH
Q ss_conf 9979999999718998999983655---------9997------999999998--58998599994379--789999999
Q gi|254780312|r 33 NNGASAYDKVREEPFSLLLTDIVMP---------EMDG------IELARRATE--LDPDLKVMFITGFA--AVALNPDSN 93 (122)
Q Consensus 33 ~~g~~al~~~~~~~~dlii~D~~mP---------~~dG------~el~~~ir~--~~~~~pii~~s~~~--~~~~~~~~~ 93 (122)
-+++++.+++.++ ++++|+|++=| +.-| -++-..+.+ ..++.+++++...+ .........
T Consensus 25 Isp~e~~~~l~~~-~~~~lIDvR~~~E~~~~~i~~~~~a~~ip~~~l~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~ 103 (137)
T 1qxn_A 25 LSPKDAYKLLQEN-PDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDPEKPVVVFCKTAARAALAGKTLR 103 (137)
T ss_dssp ECHHHHHHHHHHC-TTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHHHHHCCCTTSCEEEECCSSSCHHHHHHHHH
T ss_pred ECHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 8499999999749-498999779889998617773000233364565545665147977637987389983999999999
Q ss_pred HCCCCE
Q ss_conf 769986
Q gi|254780312|r 94 APKNAK 99 (122)
Q Consensus 94 ~~g~~~ 99 (122)
+.|...
T Consensus 104 ~~G~~n 109 (137)
T 1qxn_A 104 EYGFKT 109 (137)
T ss_dssp HHTCSC
T ss_pred HCCCCC
T ss_conf 849966
No 293
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovarkurstaki str}
Probab=26.66 E-value=34 Score=14.92 Aligned_cols=80 Identities=10% Similarity=0.201 Sum_probs=47.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHH----HCCCCEEEEEEECCCCCHH-HHHHHHHHHCCC
Q ss_conf 986699975998999999999998898999999-9799999997----1899899998365599979-999999985899
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN-NGASAYDKVR----EEPFSLLLTDIVMPEMDGI-ELARRATELDPD 74 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-~g~~al~~~~----~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~ 74 (122)
|.|++||.--...+-..++..|-+.|+.|..+. +.+++.+.+. +....+...-..+-+.+.. ++++.+.+....
T Consensus 6 ~~KtAlITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 85 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK 85 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 89989994767689999999999879989999798166999999999863995899992389999999999999997699
Q ss_pred CCEEEE
Q ss_conf 859999
Q gi|254780312|r 75 LKVMFI 80 (122)
Q Consensus 75 ~pii~~ 80 (122)
+-+++-
T Consensus 86 iDiLVn 91 (264)
T 3i4f_A 86 IDFLIN 91 (264)
T ss_dssp CCEEEC
T ss_pred CCEEEE
T ss_conf 878998
No 294
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=26.64 E-value=34 Score=14.92 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=50.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9866999759989999999999988-9899999997999999971-8998999983655999799999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~-G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii 78 (122)
|+-||-||-=-..-+......+... ++++..++...+..+.+.+ ....-+. +.++ .+-+...+.-+|
T Consensus 1 M~irigiiG~G~~a~~~h~~~l~~~~~~~l~~~d~~~~~~~~~a~~~~~~~~~--------~~~~---~ll~~~iD~V~I 69 (323)
T 1xea_A 1 MSLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATC--------TDYR---DVLQYGVDAVMI 69 (323)
T ss_dssp -CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCC--------SSTT---GGGGGCCSEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEE--------CCHH---HHHCCCCCEEEE
T ss_conf 95279999288999999999998198968999989999999999983998410--------8899---995589999998
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHH
Q ss_conf 9943797899999997699869976979--89999999
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFH--LRDLVNEV 114 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i 114 (122)
......-.+....+.+.|..-|+.||+. .++..+-+
T Consensus 70 ~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~ 107 (323)
T 1xea_A 70 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLY 107 (323)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCC
T ss_conf 17826779999999863896687457644255521210
No 295
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.57 E-value=17 Score=16.74 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=57.0
Q ss_pred CEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHH------HHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 669997599---8999999999998898999999979------9999997-18998999983655999799999999858
Q gi|254780312|r 3 QKILLAEDD---DDMRRFLIKALGKAGYEVVSCNNGA------SAYDKVR-EEPFSLLLTDIVMPEMDGIELARRATELD 72 (122)
Q Consensus 3 ~rILiVDD~---~~~r~~l~~~L~~~G~~v~~a~~g~------~al~~~~-~~~~dlii~D~~mP~~dG~el~~~ir~~~ 72 (122)
|+|.||--+ ......+.+.|.+.||+|..+.--. .++.-+. .+.+|+ .++-.|-....++++++.+..
T Consensus 5 K~iaVvGaS~~~~k~g~~v~~~L~~~G~~V~pVnP~~~~I~G~~~~~sl~~p~~iD~--v~i~~p~~~~~~~v~e~~~~g 82 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDT--VTLYINPQNQLSEYNYILSLK 82 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCE--EEECSCHHHHGGGHHHHHHHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCCE--EEEEECHHHHHHHHHHHHHCC
T ss_conf 649999666999982999999999789989998887761000589974556788757--999958899899999998539
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCE
Q ss_conf 998599994379789999999769986
Q gi|254780312|r 73 PDLKVMFITGFAAVALNPDSNAPKNAK 99 (122)
Q Consensus 73 ~~~pii~~s~~~~~~~~~~~~~~g~~~ 99 (122)
.. -+++-+|..+.+....+.+.|..-
T Consensus 83 ~k-~vw~q~G~~~e~~~~~a~~~Gi~v 108 (122)
T 3ff4_A 83 PK-RVIFNPGTENEELEEILSENGIEP 108 (122)
T ss_dssp CS-EEEECTTCCCHHHHHHHHHTTCEE
T ss_pred CC-EEEEECCCCCHHHHHHHHHCCCEE
T ss_conf 99-999936987999999999969979
No 296
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; IDP02274, hydrolase, lipopolysaccharide biosynthesis, magnesium, structural genomics; 1.95A {Yersinia pestis CO92}
Probab=26.35 E-value=34 Score=14.89 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=54.5
Q ss_pred HHHHHHHHHCCCCEEEEEE-------EC-CCCCHH----------HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 9999999718998999983-------65-599979----------99999998589985999943797899999997699
Q gi|254780312|r 36 ASAYDKVREEPFSLLLTDI-------VM-PEMDGI----------ELARRATELDPDLKVMFITGFAAVALNPDSNAPKN 97 (122)
Q Consensus 36 ~~al~~~~~~~~dlii~D~-------~m-P~~dG~----------el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~ 97 (122)
.+.++.++ ..-++++|+ .+ -+.+|- .-++.+++ ..+++.++|+........++.+.|+
T Consensus 40 ~~~~~k~~--~IKlli~DvDGVlTDG~i~~~~~Gee~k~F~~~Dg~gI~~L~~--~GI~v~iISg~~s~~v~~ra~~Lgi 115 (211)
T 3ij5_A 40 DDVIQRAA--NIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGIRCLIT--SDIDVAIITGRRAKLLEDRANTLGI 115 (211)
T ss_dssp HHHHHHHT--TCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHHHHHHHHHH--TTCEEEEECSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHH--CCCEEEECCEECCCCCEEEECCCCCEEEEEECCHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 99999997--8999998784240678499989998999995227599999998--7987999789985788898764274
Q ss_pred CEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 86997697989999999999603
Q gi|254780312|r 98 AKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 98 ~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
..+.....+..+-++.+.+.+++
T Consensus 116 ~~i~~g~~dK~~~l~~l~~~~gi 138 (211)
T 3ij5_A 116 THLYQGQSDKLVAYHELLATLQC 138 (211)
T ss_dssp CEEECSCSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCHHHHHHHHHHHCC
T ss_conf 25760655519999999998487
No 297
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032}
Probab=26.11 E-value=34 Score=14.86 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=54.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6699975998999999999998898999999-979999999718998999983655999799999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCN-NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
=||-||-=-..-+..+..+....|+++..+. .-.+..+.+.+. +++ |..+.++ +.+. .+++-+|+++
T Consensus 5 irvgiIG~G~~g~~h~~~~~~~~~~~l~av~d~~~~~~~~~~~~-~~~-------~~~~~~~--ell~--~~~iD~V~I~ 72 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA-NGA-------EAVASPD--EVFA--RDDIDGIVIG 72 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT-TTC-------EEESSHH--HHTT--CSCCCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH-HCC-------CEECCHH--HHHC--CCCCCEEEEC
T ss_conf 77989997299999999997189948999988999999999998-499-------7789999--9964--8998889971
Q ss_pred CCC--CHHHHHHHHHCCCCEEEECCCC--HHHHHHH
Q ss_conf 379--7899999997699869976979--8999999
Q gi|254780312|r 82 GFA--AVALNPDSNAPKNAKVLSKPFH--LRDLVNE 113 (122)
Q Consensus 82 ~~~--~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~ 113 (122)
... -.+....+.+.|..-|+.||+. .++..+.
T Consensus 73 tp~~~h~~~~~~al~~gk~Vl~EKP~a~~~~e~~~l 108 (344)
T 3euw_A 73 SPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRAC 108 (344)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHH
T ss_conf 543110356799885137511023220013456666
No 298
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=26.09 E-value=34 Score=14.86 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 998999999999998898999--999979999999718998999983
Q gi|254780312|r 10 DDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDI 54 (122)
Q Consensus 10 D~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~ 54 (122)
.+.......+..+.+.|++|+ .+.+|.+..+.+.++..|+.++..
T Consensus 13 ~~~~~l~~~k~~~k~~Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~ 59 (241)
T 1xs5_A 13 PHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQH 59 (241)
T ss_dssp THHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECC
T ss_conf 85999999999999749889999938817789999769976798557
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.84 E-value=35 Score=14.83 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCEEEEECCCH---HHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHHHCCCCEEEEEEE--CCCCCHH----HHH
Q ss_conf 86699975998---999999999998898999999979-------9999997189989999836--5599979----999
Q gi|254780312|r 2 NQKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGA-------SAYDKVREEPFSLLLTDIV--MPEMDGI----ELA 65 (122)
Q Consensus 2 ~~rILiVDD~~---~~r~~l~~~L~~~G~~v~~a~~g~-------~al~~~~~~~~dlii~D~~--mP~~dG~----el~ 65 (122)
.+||+++--|. ...+.++...+..|..+..+.++. +|+.......+|+|++|-. +|.-+-. |+.
T Consensus 126 g~kv~l~a~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d~~~v~~~a~~~~~~~~~D~vlIDTaGR~~~~~~~~~~~el~ 205 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMK 205 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHH
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 97641121156544489999998631395154237777767899999999985599889954877675205565689999
Q ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHH---HH-CCCCE-EEEC
Q ss_conf 999985899859999437978999999---97-69986-9976
Q gi|254780312|r 66 RRATELDPDLKVMFITGFAAVALNPDS---NA-PKNAK-VLSK 103 (122)
Q Consensus 66 ~~ir~~~~~~pii~~s~~~~~~~~~~~---~~-~g~~~-~l~K 103 (122)
+-.+...|+-.++++++........++ .+ .+.++ +++|
T Consensus 206 ~i~~~~~p~e~~LVlda~~g~~~~~~~~~f~~~~~~~glIlTK 248 (297)
T 1j8m_F 206 NIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITK 248 (297)
T ss_dssp HHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEEEEEEC
T ss_pred HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9986369765899861456840799999987635998799951
No 300
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=25.81 E-value=35 Score=14.83 Aligned_cols=49 Identities=4% Similarity=0.082 Sum_probs=33.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 66999759989999999999988989999999799999997189989999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT 52 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~ 52 (122)
.+|||+|--...-+++++.+++.|..++....- ..++.+....|+-||+
T Consensus 30 ~kIlIlDFGsQYtqLIaRRiRElgVyseI~p~~-~~~e~i~~~~p~GIIL 78 (697)
T 2vxo_A 30 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIII 78 (697)
T ss_dssp CCEEEEEEC--CHHHHHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEE
T ss_conf 989999889549999999998519728997799-9999996169999998
No 301
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
Probab=25.50 E-value=35 Score=14.79 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 999759989999999999988989999999799999997189989999
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT 52 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~ 52 (122)
|||+|--...-+.+++.+++.|+.++....-. .++.+....|+-||+
T Consensus 2 IlIlDfGsQytqlIaRriRElgvyseI~P~~~-~~eei~~~~p~GIIL 48 (503)
T 2ywb_A 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDA-PLEEVLKHRPQALIL 48 (503)
T ss_dssp EEEEESSCTTHHHHHHHHHTTTCCEEEEETTC-CHHHHHTTCCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHCCCCEEEE
T ss_conf 89998897299999999998698399986989-999997169899998
No 302
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B}
Probab=25.37 E-value=35 Score=14.78 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=50.4
Q ss_pred CCCEE-EEECCCHHHHHHHHHHHHHCCCEEEEE-CC----HHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCC
Q ss_conf 98669-997599899999999999889899999-99----79999999718998999983655999799-9999998589
Q gi|254780312|r 1 MNQKI-LLAEDDDDMRRFLIKALGKAGYEVVSC-NN----GASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATELDP 73 (122)
Q Consensus 1 M~~rI-LiVDD~~~~r~~l~~~L~~~G~~v~~a-~~----g~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~ 73 (122)
|++|| ||.--...+-..+...|-+.|+.|... .+ ..+..+.++....++...-..+-+.+..+ +++++.+...
T Consensus 11 l~~KvalVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 90 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVG 90 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 49988999387868999999999987998999808974889999999984399689997678999999999999999749
Q ss_pred CCCEEEEE
Q ss_conf 98599994
Q gi|254780312|r 74 DLKVMFIT 81 (122)
Q Consensus 74 ~~pii~~s 81 (122)
.+-+++-.
T Consensus 91 ~iDiLVnn 98 (256)
T 3ezl_A 91 EIDVLVNN 98 (256)
T ss_dssp CEEEEEEC
T ss_pred CCCEEEEC
T ss_conf 99899989
No 303
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=25.25 E-value=36 Score=14.76 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=24.9
Q ss_pred CCCEE--EEECCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 98669--9975998999999999998898999
Q gi|254780312|r 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVV 30 (122)
Q Consensus 1 M~~rI--LiVDD~~~~r~~l~~~L~~~G~~v~ 30 (122)
|.+++ ++|||.|.+..-++..+++.||-++
T Consensus 1 M~k~~isvlveN~pGvL~Rv~glFsrRg~NI~ 32 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIE 32 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCS
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHCCCCCEE
T ss_conf 95599999998786799999999851675456
No 304
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus HB8} PDB: 1x1e_A* 2ekq_A
Probab=25.20 E-value=36 Score=14.76 Aligned_cols=76 Identities=26% Similarity=0.291 Sum_probs=51.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC-HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9866999759989999999999988989999999-799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNN-GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~-g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|+|++||.--...+-..+...|-+.|++|..+.. .+++-+.+. .-.+-.|+ -..+--++++++.+....+-+++
T Consensus 1 M~K~alVTGas~GIG~a~a~~la~~Ga~V~~~~r~~~~~~~~~~---~~~~~~Dv--~~~~~~~~~~~~~~~~g~iDilV 75 (239)
T 2ekp_A 1 MERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLG---AVPLPTDL--EKDDPKGLVKRALEALGGLHVLV 75 (239)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHT---CEEEECCT--TTSCHHHHHHHHHHHHTSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC---CEEEEEEC--CHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99889997796689999999999879999999799999998559---77999435--88999999999999819998999
Q ss_pred EE
Q ss_conf 94
Q gi|254780312|r 80 IT 81 (122)
Q Consensus 80 ~s 81 (122)
-.
T Consensus 76 nn 77 (239)
T 2ekp_A 76 HA 77 (239)
T ss_dssp EC
T ss_pred EC
T ss_conf 89
No 305
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=24.83 E-value=36 Score=14.71 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 986699975998999999999998898999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
|+ ||||.--.=.+...+...|-..||+|....
T Consensus 1 M~-KILVTGgtGfIG~~lv~~Ll~~g~~V~~~d 32 (347)
T 1orr_A 1 MA-KLLITGGCGFLGSNLASFALSQGIDLIVFD 32 (347)
T ss_dssp -C-EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CC-EEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98-899928874899999999997839899997
No 306
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=24.59 E-value=37 Score=14.69 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE--ECCHH-----HHHHHH-HHCCCCEEEEEEE
Q ss_conf 9866999759989999999999988989999--99979-----999999-7189989999836
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS--CNNGA-----SAYDKV-REEPFSLLLTDIV 55 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~--a~~g~-----~al~~~-~~~~~dlii~D~~ 55 (122)
|++||.+.=-==.--.++...|.+.||+|++ +.-|+ ++-+.. .-+.-..++.|+.
T Consensus 13 Mk~KVvlAySGGLDTSv~l~~L~e~g~eVi~~~~d~Gq~ed~~~~~~kA~~~GA~~~~v~D~r 75 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR 75 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECHH
T ss_conf 537099993887489999999987799799999979976778999999998499689998609
No 307
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=24.47 E-value=37 Score=14.67 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=58.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC----------EE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHH----HH
Q ss_conf 86699975998999999999998898----------99-99999799999997189989999836559997999----99
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGY----------EV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL----AR 66 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~----------~v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el----~~ 66 (122)
..+|..+|-++.+..++...|+.... .+ ....|..+.+... +..||+|.+|=+.|.-.--.+ .+
T Consensus 110 G~~V~~iEr~p~l~~ll~d~l~ra~~~~~~~~~~~~ri~l~~~Ds~~~L~~~-~~~~DvIYlDPMFp~~~KsA~~kk~m~ 188 (258)
T 2oyr_A 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQVVYLDPMFPHKQKSALVKKEMR 188 (258)
T ss_dssp TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-SSCCSEEEECCCCCCCCC-----HHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCHHHHHHHC-CCCCCEEEECCCCCCCCCCCCCCCHHH
T ss_conf 9968998479999999999999987273778998632378738799998626-766887998999986455332110689
Q ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-CCC
Q ss_conf 9998589985999943797899999997699869976-979
Q gi|254780312|r 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK-PFH 106 (122)
Q Consensus 67 ~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K-P~~ 106 (122)
.++.....- ....+....+.......++.| |..
T Consensus 189 ~l~~l~~~~-------~d~~~ll~~A~~~a~kRVVVKRp~~ 222 (258)
T 2oyr_A 189 VFQSLVGPD-------LDADGLLEPARLLATKRVVVKRPDY 222 (258)
T ss_dssp HHHHHSCCC-------TTGGGGHHHHHHHCSSEEEEEEETT
T ss_pred HHHHHHCCC-------CCHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 999861578-------7889999999963798699937588
No 308
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=24.36 E-value=37 Score=14.66 Aligned_cols=64 Identities=6% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999999889899999997------9999999718998999983655999799999999858998599994
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
.+...+...+.+.||.+....+. .+.++.+.+..+|.+|+ .|....-+..+.+.+ ..+|++.+.
T Consensus 29 ~~~~gi~~~a~~~Gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi---~~~~~~~~~~~~l~~--~~iPvV~~~ 98 (295)
T 3hcw_A 29 NVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFIL---LYSKENDPIKQMLID--ESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEE---SCCCTTCHHHHHHHH--TTCCEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCCHHHHHHHH--CCCCEEEEE
T ss_conf 9999999999986998999978999799999999999589988999---766566099999997--599889983
No 309
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=24.35 E-value=37 Score=14.66 Aligned_cols=99 Identities=10% Similarity=-0.087 Sum_probs=68.7
Q ss_pred HHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHH
Q ss_conf 9999999889--8999999979999999718998999983655999799999999858-998599994379789999999
Q gi|254780312|r 17 FLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD-PDLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 17 ~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~-~~~pii~~s~~~~~~~~~~~~ 93 (122)
-+++.|+.-. +-+.+........+.+....||.+++|++=-..|--++...++... ..++.++-....+.....+++
T Consensus 9 ~lk~~l~~g~~~~G~~~~~~sp~~~ei~a~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~L 88 (256)
T 1dxe_A 9 KFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLL 88 (256)
T ss_dssp HHHHHHHTTCCEEEEEECSCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH
T ss_conf 99999987996699875789979999998179998998268798867779999999971799838856889999999987
Q ss_pred HCCCCEEEECCCC-HHHHHHHHH
Q ss_conf 7699869976979-899999999
Q gi|254780312|r 94 APKNAKVLSKPFH-LRDLVNEVN 115 (122)
Q Consensus 94 ~~g~~~~l~KP~~-~~~L~~~i~ 115 (122)
..|+.+++.--++ .++..+.++
T Consensus 89 D~Ga~GiivP~V~s~eea~~~v~ 111 (256)
T 1dxe_A 89 DIGFYNFLIPFVETKEEAELAVA 111 (256)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHH
T ss_pred CCCCCEEEECCCCCHHHHHHHHH
T ss_conf 18989777278699999999997
No 310
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=24.22 E-value=37 Score=14.64 Aligned_cols=56 Identities=16% Similarity=0.010 Sum_probs=32.1
Q ss_pred CEEEEEEECCC------------CCHHHHHHHHHHHCCCCCEEEEECCCCHH--HHHHHHHCCCCEEEEC
Q ss_conf 89999836559------------99799999999858998599994379789--9999997699869976
Q gi|254780312|r 48 SLLLTDIVMPE------------MDGIELARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSK 103 (122)
Q Consensus 48 dlii~D~~mP~------------~dG~el~~~ir~~~~~~pii~~s~~~~~~--~~~~~~~~g~~~~l~K 103 (122)
+++|+|++.|. +.=-++...+.+..++.+++++-+.+... ......+.|...+..+
T Consensus 17 ~~~liDvR~~~E~~~ghI~gAi~ip~~~l~~~~~~l~~d~~iv~yC~~G~rS~~aa~~L~~~Gf~v~~l~ 86 (108)
T 3gk5_A 17 AYTVLDVREPFELIFGSIANSINIPISELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVE 86 (108)
T ss_dssp TCEEEECSCHHHHTTCBCTTCEECCHHHHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEET
T ss_pred CEEEEECCCHHHHHCCCCCCCCCCCCCCHHHHEEECCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9099989868999639178756484100122202038777767888998499999999998499889985
No 311
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=23.99 E-value=38 Score=14.62 Aligned_cols=75 Identities=13% Similarity=0.218 Sum_probs=51.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE---EEEECCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHH-HCCCC
Q ss_conf 66999759989999999999988989---9999997999999971---89989999836559997999999998-58998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVRE---EPFSLLLTDIVMPEMDGIELARRATE-LDPDL 75 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~---v~~a~~g~~al~~~~~---~~~dlii~D~~mP~~dG~el~~~ir~-~~~~~ 75 (122)
.+|.-+|.++.........+...|+. .....+..+.+..+.. .+||++++|..... -.+.++.+.. ..|.-
T Consensus 84 g~i~tie~~~~~~~~a~~~~~~~g~~~~i~~~~~~~~d~l~~L~~~~~~~fD~ifiD~~~~~--~~~~~~~~~~lLrpGG 161 (223)
T 3duw_A 84 GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQN--NPAYFEWALKLSRPGT 161 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGGG--HHHHHHHHHHTCCTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCHHH--HHHHHHHHHHCCCCCC
T ss_conf 85999944888899999999984997646687345236777765057876659999657466--8999999982258997
Q ss_pred CEEEE
Q ss_conf 59999
Q gi|254780312|r 76 KVMFI 80 (122)
Q Consensus 76 pii~~ 80 (122)
+|++
T Consensus 162 -vii~ 165 (223)
T 3duw_A 162 -VIIG 165 (223)
T ss_dssp -EEEE
T ss_pred -EEEE
T ss_conf -8999
No 312
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15}
Probab=23.90 E-value=38 Score=14.61 Aligned_cols=76 Identities=11% Similarity=-0.033 Sum_probs=45.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEEE
Q ss_conf 66999759989999999999988989999--9997999999971899899998365599979999999985-89985999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVMF 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii~ 79 (122)
-+|.=+|-++......+.-++..|..-.. ..+..+++. ....||.|+++...+. -.+++.++.+. .|.=.+++
T Consensus 65 ~~V~aiD~~~~~~~~a~~n~~~~g~~~~~~~~g~~~~~~~--~~~~~D~i~i~~~~~~--~~~~l~~~~~~L~pGG~lvi 140 (204)
T 3e05_A 65 GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--DLPDPDRVFIGGSGGM--LEEIIDAVDRRLKSEGVIVL 140 (204)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--TSCCCSEEEESCCTTC--HHHHHHHHHHHCCTTCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--CCCCCCEEEECCCCCC--HHHHHHHHHHHCCCCCEEEE
T ss_conf 6799994999999999999998199858997345323454--3578769999065523--58999999985489989999
Q ss_pred EEC
Q ss_conf 943
Q gi|254780312|r 80 ITG 82 (122)
Q Consensus 80 ~s~ 82 (122)
.+.
T Consensus 141 ~~~ 143 (204)
T 3e05_A 141 NAV 143 (204)
T ss_dssp EEC
T ss_pred EEE
T ss_conf 963
No 313
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 2jjy_A*
Probab=23.82 E-value=38 Score=14.60 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=44.8
Q ss_pred CEEEEEC--CCHHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 6699975--99899999999999889899999--99799999997189--989999836559997999999998589985
Q gi|254780312|r 3 QKILLAE--DDDDMRRFLIKALGKAGYEVVSC--NNGASAYDKVREEP--FSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 3 ~rILiVD--D~~~~r~~l~~~L~~~G~~v~~a--~~g~~al~~~~~~~--~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
|++||.- .+..+-..+++.|.+.|++|..+ .+.++.++.+.++. ...+..|.. -.-+--++.+.+.+....+.
T Consensus 27 K~~lITG~a~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~v~~~~~~~~~~~g~id 105 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVI-SDQEIKDLFVELGKVWDGLD 105 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTT-CHHHHHHHHHHHHHHCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC-CHHHHHHHHHHHHHHHCCCC
T ss_conf 88999799887389999999999869999999688259999999984397146761020-42889999999999848877
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780312|r 77 VMFI 80 (122)
Q Consensus 77 ii~~ 80 (122)
+++.
T Consensus 106 ~lv~ 109 (280)
T 3nrc_A 106 AIVH 109 (280)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 6763
No 314
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor}
Probab=23.64 E-value=38 Score=14.58 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=22.8
Q ss_pred CCCEEEEECC---CHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9866999759---98999999999998898999999
Q gi|254780312|r 1 MNQKILLAED---DDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~rILiVDD---~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
|+|||+|+=- ++.-.......|++.||+|..++
T Consensus 8 m~kkv~i~v~~Gf~~~E~~~p~~vLrrag~~v~~~s 43 (208)
T 3ot1_A 8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAA 43 (208)
T ss_dssp -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 886699995799729999999999998899899998
No 315
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=23.59 E-value=38 Score=14.57 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=15.6
Q ss_pred ECCCCCHHHHHHHHH-HHCCCCCEEEEECC
Q ss_conf 655999799999999-85899859999437
Q gi|254780312|r 55 VMPEMDGIELARRAT-ELDPDLKVMFITGF 83 (122)
Q Consensus 55 ~mP~~dG~el~~~ir-~~~~~~pii~~s~~ 83 (122)
.++..+|-+.++.-. +..+++|++-+..+
T Consensus 176 e~~~l~Gr~~l~~~g~~~~~~i~i~sL~~~ 205 (236)
T 1qb7_A 176 SIPFLKAAEKIHSTANSRYKDIKFISLLSD 205 (236)
T ss_dssp ECGGGCHHHHHHHHHHHTTTTCCEEEEEEG
T ss_pred ECCCCCHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 858777799998605564468657985233
No 316
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=23.39 E-value=39 Score=14.55 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=61.8
Q ss_pred HHHHHHHHHHCCCEEEEE---------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH---H-------HCCCC
Q ss_conf 999999999889899999---------9979999999718998999983655999799999999---8-------58998
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSC---------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT---E-------LDPDL 75 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a---------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir---~-------~~~~~ 75 (122)
+..+...|+..|++|... .+..+..+.+.++.+|.|+. .++-.+-.-+. + ....+
T Consensus 143 ~~~L~~~L~~~G~~V~~v~~Y~t~~~~~~~~~l~~~l~~~~~D~V~f------tS~s~v~~f~~~~~~~~~l~~~l~~~~ 216 (261)
T 1wcw_A 143 LPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAF------VAAIQVEFLFEGAKDPKALREALNTRV 216 (261)
T ss_dssp CHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEE------CSHHHHHHHHHHCSCHHHHHHHHHHTS
T ss_pred CHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEE------CCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 17899999978998999989998368645689999874478119995------799999999998654204578742797
Q ss_pred CEEEEECCCCHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 59999437978999999976998-69976979899999999996036
Q gi|254780312|r 76 KVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 76 pii~~s~~~~~~~~~~~~~~g~~-~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+++-+ | ......+.+.|.. .+.....+.+.|++++.+.++.+
T Consensus 217 ~v~aI-G---p~Ta~al~~~G~~~~~~~~~~~~~~lv~al~~~l~~~ 259 (261)
T 1wcw_A 217 KALAV-G---RVTADALREWGVKPFYVDETERLGSLLQGFKRALQKE 259 (261)
T ss_dssp EEEEE-S---HHHHHHHHHTTCCCSEEECSCCHHHHHHHHHHHHHHH
T ss_pred EEEEE-C---HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 89998-9---9999999986998579759999899999999998764
No 317
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=23.32 E-value=39 Score=14.54 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.8
Q ss_pred CCC-EEEEE-----CCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 986-69997-----5998999999999998898999999
Q gi|254780312|r 1 MNQ-KILLA-----EDDDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 1 M~~-rILiV-----DD~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
|++ ||||| -....+.+.+.+-++..|.+|....
T Consensus 3 m~~~Kilivy~S~~GnT~~la~~i~~g~~~~g~ev~~~~ 41 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRT 41 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEB
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 899828999938980899999999998864496689984
No 318
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=23.32 E-value=39 Score=14.54 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=47.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCCCCEEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979-9999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~~pii~~s 81 (122)
|.+||.--...+-..+...|.+.|+.|..+..-.++.+..++.....+-+|+. +.+.. ++++++.+....+-+++-.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~Dv~--~~~~v~~~~~~~~~~~G~iDiLVnn 84 (256)
T 2d1y_A 7 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLE--DERERVRFVEEAAYALGRVDVLVNN 84 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTT--CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 88999388868999999999987999999968878999998769939998689--9999999999999975999799989
No 319
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=23.29 E-value=39 Score=14.54 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=32.4
Q ss_pred HHHHHCCCCEEEEEEEC-----CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 99971899899998365-----59997999999998589985999943797899999
Q gi|254780312|r 40 DKVREEPFSLLLTDIVM-----PEMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 40 ~~~~~~~~dlii~D~~m-----P~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
+.+.+..||++|+|-.+ --++--++++-|++ .|.---+++||....+....
T Consensus 114 ~~~~~~~~dlvILDEi~~Ai~~gli~~eev~~~l~~-rp~~~evVlTGR~~p~~L~e 169 (196)
T 1g5t_A 114 RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHH
T ss_pred HHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCHHHHH
T ss_conf 985357657786998999998699689999999982-89997899979999989998
No 320
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: d.58.18.6 d.58.18.6
Probab=23.14 E-value=39 Score=14.52 Aligned_cols=34 Identities=12% Similarity=0.373 Sum_probs=26.9
Q ss_pred CCCEE--EEECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 98669--99759989999999999988989999999
Q gi|254780312|r 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNN 34 (122)
Q Consensus 1 M~~rI--LiVDD~~~~r~~l~~~L~~~G~~v~~a~~ 34 (122)
|.+++ ++|+|.+.+..-++.+|++.||-+++-+-
T Consensus 27 ~~~~~isvlVeN~pGvL~RV~glFsrRg~NIeSLsv 62 (193)
T 2fgc_A 27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITV 62 (193)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEE
T ss_pred CEEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 108999999978788899999998648968546785
No 321
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=23.03 E-value=39 Score=14.50 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCEEEEEC---CH---HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999998898999999---97---999999971899899998365599979999999985899859999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCN---NG---ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~---~g---~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+.+...+.+.||.+..+. +. .+.++.+.++.+|.+|+. |.. .-+..+.+.+ .++|+|.+
T Consensus 26 i~gi~~~~~~~gy~~~i~~~~~~~~~~~~~i~~l~~~~vdgiIl~---~~~-~~~~~~~~~~--~~iPvV~~ 91 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQ---SFS-NPQTVQEILH--QQMPVVSV 91 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEE---SSC-CHHHHHHHHT--TSSCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCC-CHHHHHHHHH--CCCCEEEE
T ss_conf 999999999869999999489998999999999996699899995---368-9699999997--49999997
No 322
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=23.00 E-value=18 Score=16.60 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=44.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 8669997599899999999999889899--9999979999999718998999983655999799999999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEV--VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v--~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
..++-.||.++.........+...++.- ....+|.+++ -...+||.|++....+...- .++++++
T Consensus 99 ~~~v~~ve~~~~~~~~a~~~~~~~~~~nv~~~~gdg~~g~--~~~~pyD~Iiv~~a~~~iP~-~l~~qL~ 165 (210)
T 3lbf_A 99 VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW--QARAPFDAIIVTAAPPEIPT-ALMTQLD 165 (210)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC--GGGCCEEEEEESSBCSSCCT-HHHHTEE
T ss_pred HCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC--CCCCCCCEEEEEECCCHHHH-HHHHHCC
T ss_conf 2832545422289999999988626667179985777677--55698037999641202259-9999626
No 323
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=22.97 E-value=39 Score=14.50 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 99999999999889899999997------99999997189989999836559997999999998
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
.+...+.+.+++.||.+..+.++ .+.++.+.+..+|-+|+ +|....-+....+++
T Consensus 20 ~~~~gi~~~~~~~Gy~~~~~~s~~~~~~e~~~i~~l~~~~vdgiIv---~~~~~~~~~~~~l~~ 80 (275)
T 3d8u_A 20 HFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVL---FGSEHSQRTHQLLEA 80 (275)
T ss_dssp HHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEE---ESSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---CCCCCCHHHHHHHHH
T ss_conf 9999999999985999999968999899999999999739989995---798799899999997
No 324
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=22.81 E-value=40 Score=14.48 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHH
Q ss_conf 89999999999988989999-999799999997189989999836559997999
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el 64 (122)
.....+++..|+..||+|.. ..+...++..+.++.+|+. .++-+|.......
T Consensus 15 ~~~a~i~~~~Le~~Gy~Ve~~~~~~~~~~~al~~G~iDi~-~e~w~~~~~~~~~ 67 (256)
T 3l6g_A 15 VASINVLTQAMKEHGFDVKTTALDNAVAWQTVANGQADGM-VSAWLPNTHKTQW 67 (256)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECCHHHHHHHHHTTSSSEE-EEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCEE-EECCCCHHHHHHH
T ss_conf 9999999999998699459987884899999987998298-5114324556667
No 325
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=22.77 E-value=40 Score=14.47 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCCEEEEECC-------CHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHH---HCCCCEEEEEEECCCCCH--HHHHH
Q ss_conf 9866999759-------989999999999988989999--999799999997---189989999836559997--99999
Q gi|254780312|r 1 MNQKILLAED-------DDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVR---EEPFSLLLTDIVMPEMDG--IELAR 66 (122)
Q Consensus 1 M~~rILiVDD-------~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~---~~~~dlii~D~~mP~~dG--~el~~ 66 (122)
|.||++||=. -.....-+...|+..|++++. .....+|.+.++ ...||+|+.-= -|| -+++.
T Consensus 23 m~kr~~vI~NP~SG~g~~~~~~~~i~~~l~~~g~~~~i~~T~~~g~a~~~a~~~~~~~~d~IVv~G----GDGTv~ev~~ 98 (337)
T 2qv7_A 23 MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAG----GDGTLNEVVN 98 (337)
T ss_dssp CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE----CHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC----CCHHHHHHHH
T ss_conf 663599999988898757999999999999879969999828922699999998777999999990----6569999999
Q ss_pred HHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99985899859999-43797899999997699869976979899999999
Q gi|254780312|r 67 RATELDPDLKVMFI-TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 67 ~ir~~~~~~pii~~-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~ 115 (122)
.+.+....+|+-++ .|.++.-. ...|. |-++.+.++.+.
T Consensus 99 gl~~~~~~~plgiiP~GTgN~~A----r~lgi------~~~~~~a~~~i~ 138 (337)
T 2qv7_A 99 GIAEKPNRPKLGVIPMGTVNDFG----RALHI------PNDIMGALDVII 138 (337)
T ss_dssp HHTTCSSCCEEEEEECSSCCHHH----HHTTC------CSSHHHHHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCCCEE----EECCC------CCCHHHHHHHHH
T ss_conf 99861679618995499998131----60467------876688888774
No 326
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51
Probab=22.58 E-value=40 Score=14.45 Aligned_cols=52 Identities=6% Similarity=0.060 Sum_probs=41.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE---EE-EECCHHHHHHHHHH--CCCCEEEEEE
Q ss_conf 66999759989999999999988989---99-99997999999971--8998999983
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE---VV-SCNNGASAYDKVRE--EPFSLLLTDI 54 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~---v~-~a~~g~~al~~~~~--~~~dlii~D~ 54 (122)
.+|.-||-++........-++..|.. +. ...|..+.++.+.. ..||+|++|-
T Consensus 236 ~~V~~vD~s~~a~~~a~~N~~~N~l~~~~~~~~~~D~~~~L~~~~~~~~~fD~IilDP 293 (385)
T 2b78_A 236 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEECC
T ss_conf 5888526769999999998998489976447772669999999986489888899898
No 327
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=22.56 E-value=40 Score=14.45 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=55.9
Q ss_pred CEEEEECCC-H---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997599-8---99999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDD-D---DMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~-~---~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++-++ + .....+...+++.|+++... .|-...+..+++..+|+|++-.. .-+...+++++++.
T Consensus 144 k~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~D~~~~v~~lk~~~~d~V~~~~~--~~~~~~~~~~~~~~ 221 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNV--AGPVANILKDAKRL 221 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESC--HHHHHHHHHHHHHT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECC--CHHHHHHHHHHHHC
T ss_conf 7799993687066999999999998659879999803777641206888755359988999356--52799999999984
Q ss_pred CCCCCEEEEECCCCHHHHHHH
Q ss_conf 899859999437978999999
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDS 92 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~ 92 (122)
.-+.+++..++..+......+
T Consensus 222 G~~~~~~~~~~~~~~~~~~~~ 242 (392)
T 3lkb_A 222 GLKMRHLGAHYTGGPDLIALA 242 (392)
T ss_dssp TCCCEEEECGGGCSHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHH
T ss_conf 999649996677887899877
No 328
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima}
Probab=22.51 E-value=40 Score=14.44 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=47.6
Q ss_pred HHHHHHHHHHC-CCCEEEEEEECCC-CCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 79999999718-9989999836559-997--99999999858998599994379789999999769986997
Q gi|254780312|r 35 GASAYDKVREE-PFSLLLTDIVMPE-MDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 35 g~~al~~~~~~-~~dlii~D~~mP~-~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
..+.+..+.+. .-.++++|+.--+ +.| +++++.+++ ..+.|+|..-|.++.+...++.+.|+++.+.
T Consensus 158 ~~~~~~~~~~~g~geil~t~V~~DGt~~G~d~~l~~~i~~-~~~~piI~sGGi~s~~di~~l~~~g~~gvi~ 228 (266)
T 2w6r_A 158 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP-LTTLPIIASGGAGKMEHFLEAFLAGADAALA 228 (266)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGG-GCCSCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 0233543315585858998887879868876799999986-1897789994799999999999789979998
No 329
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=22.45 E-value=40 Score=14.43 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=40.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 6699975998999999999998898999-9999799999997189989999836
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIV 55 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~ 55 (122)
.+|.-+|-++.-...+...+...|.... ...++.........+.||.|++|.-
T Consensus 271 ~~i~a~d~~~~r~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fD~VLlDaP 324 (429)
T 1sqg_A 271 AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CCCEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCEEEEECC
T ss_conf 465622342677888877786416431110234433101035456645997076
No 330
>2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129}
Probab=22.37 E-value=25 Score=15.70 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 99979999999985899
Q gi|254780312|r 58 EMDGIELARRATELDPD 74 (122)
Q Consensus 58 ~~dG~el~~~ir~~~~~ 74 (122)
+.+=.+.++.+++...+
T Consensus 127 G~S~~~~i~~l~~~G~~ 143 (180)
T 2p1z_A 127 GNSPLTAVKALREAGAE 143 (180)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHCCCE
T ss_conf 75199999999988997
No 331
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=22.37 E-value=41 Score=14.42 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=54.4
Q ss_pred CCCEEEEECCCHHHHHH-HHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 98669997599899999-999999889899999997--999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQKILLAEDDDDMRRF-LIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~-l~~~L~~~G~~v~~a~~g--~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+-||-||-=-..-... +..+....++++..+.+. .++-+...+...--...|+ -+++ + .+++-+
T Consensus 1 M~irvgiIG~G~~~~~~h~~~~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~-------~ell----~-~~~iD~ 68 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADL-------NELL----T-DPEIEL 68 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCT-------HHHH----S-CTTCCE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCEECCH-------HHHH----C-CCCCCE
T ss_conf 950599998809999999999961989789999909999999997553899357999-------9996----5-999888
Q ss_pred EEEECC--CCHHHHHHHHHCCCCEEEECCCC--HHHHHHHH
Q ss_conf 999437--97899999997699869976979--89999999
Q gi|254780312|r 78 MFITGF--AAVALNPDSNAPKNAKVLSKPFH--LRDLVNEV 114 (122)
Q Consensus 78 i~~s~~--~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i 114 (122)
+++..- ...+...++++.|..-|+.||+. ..+..+-+
T Consensus 69 V~i~tp~~~H~~~~~~al~agkhV~~EKP~a~~~~e~~~l~ 109 (349)
T 3i23_A 69 ITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELF 109 (349)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHH
T ss_conf 99888714567889999984991875177420022102202
No 332
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=22.28 E-value=41 Score=14.41 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=49.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-----------CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCC-----HHHHH
Q ss_conf 66999759989999999999988-----------98999-999979999999718998999983655999-----79999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA-----------GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD-----GIELA 65 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~-----------G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~d-----G~el~ 65 (122)
.+|-+||=|+.+-+..+..+... .=++. ...||.+-++ ....||+|++|..-|... ..|+.
T Consensus 99 ~~v~~VEiD~~vi~~a~~~~~~~~~~~e~~~~~~d~rv~v~~~Da~~~l~--~~~~yDvIi~D~~~p~~~~~~L~t~eF~ 176 (281)
T 1mjf_A 99 DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK--NNRGFDVIIADSTDPVGPAKVLFSEEFY 176 (281)
T ss_dssp SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH--HCCCEEEEEEECCCCC-----TTSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHH
T ss_conf 35899706889999999851114213445303579966999621899973--0788788999189988865323679999
Q ss_pred HHHHHHCCCCCEEEE
Q ss_conf 999985899859999
Q gi|254780312|r 66 RRATELDPDLKVMFI 80 (122)
Q Consensus 66 ~~ir~~~~~~pii~~ 80 (122)
+.+++.-.+--+++.
T Consensus 177 ~~~~~~L~~~Gilv~ 191 (281)
T 1mjf_A 177 RYVYDALNNPGIYVT 191 (281)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999874179809999
No 333
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=22.06 E-value=41 Score=14.39 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=33.8
Q ss_pred EEEECCC-----HHHHHHHHHHHHHCCCEEE---EECCHHHHH-HHH----HHCCCCEEEEE
Q ss_conf 9997599-----8999999999998898999---999979999-999----71899899998
Q gi|254780312|r 5 ILLAEDD-----DDMRRFLIKALGKAGYEVV---SCNNGASAY-DKV----REEPFSLLLTD 53 (122)
Q Consensus 5 ILiVDD~-----~~~r~~l~~~L~~~G~~v~---~a~~g~~al-~~~----~~~~~dlii~D 53 (122)
||.|-|. ..+...+...|+++||+|. .+.+..+.+ +.+ .+..+|+|++-
T Consensus 15 vitvsD~rg~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~~~~~l~~~~~~~~~dlIiTt 76 (172)
T 1mkz_A 15 ILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp EEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99984898867667399999999985995776310588579999999998762567615852
No 334
>2pc6_A Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=22.02 E-value=33 Score=14.94 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCCEE-EEECCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 98669-99759989999999999988989999
Q gi|254780312|r 1 MNQKI-LLAEDDDDMRRFLIKALGKAGYEVVS 31 (122)
Q Consensus 1 M~~rI-LiVDD~~~~r~~l~~~L~~~G~~v~~ 31 (122)
|.+.+ ++|||.|.+..-++..+++.||-+++
T Consensus 3 Mk~~isvlveN~pGvL~rv~glFsrRg~NIeS 34 (165)
T 2pc6_A 3 MRHIISLLMENEAGALSRVAGLFSARGYNIES 34 (165)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCE
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 53999999987856999999998626743578
No 335
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=22.01 E-value=32 Score=15.02 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=34.3
Q ss_pred CEEEE-EEECCCCCHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 89999-836559997999999998589985-9999437978999999976998699769798999999999
Q gi|254780312|r 48 SLLLT-DIVMPEMDGIELARRATELDPDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 48 dlii~-D~~mP~~dG~el~~~ir~~~~~~p-ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
.++|+ |+.=-+.+-.+.++.+|+...++. ++++.-.......+...+.|+.-| .= ++.++|++.+.+
T Consensus 139 ~VlIVDDViTTG~Si~~ai~~lr~~G~~V~~v~vivdr~~~gg~e~l~~~Gv~~~-sL-~t~~dl~~~~~~ 207 (234)
T 3m3h_A 139 KVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASY-SL-SDYSALTEVAAE 207 (234)
T ss_dssp EEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEEECCCHHHHHHHHHTTCCEE-ES-SCHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHHHHCCCCEE-EE-CCHHHHHHHHHH
T ss_conf 5999853003472279999999978997999999998774406999996799789-97-769999999998
No 336
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, loop-6, purine biosynthesis; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=21.88 E-value=41 Score=14.37 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 999999718998999983655-999799999999858998599994379789999999769986997
Q gi|254780312|r 37 SAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 37 ~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
+-...+.+...|+++.|..=- ...-.++++++|+..|++|||. -.....+.....+..|++....
T Consensus 156 ~r~~~Lv~agvD~ivID~ahg~s~~~~~~ik~ik~~~p~~~VIa-GNV~T~e~a~~L~~~GAD~VkV 221 (404)
T 1eep_A 156 ERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp HHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEC-CCCCCHHHHHHHHHCCCCEEEE
T ss_conf 99999986368777511456655889999999998789986771-4555699999999759996675
No 337
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125}
Probab=21.61 E-value=42 Score=14.33 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=49.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999759989999999999988989--99-99997999999971-899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
-+|.-+|-++......+..+...|+. +. ...++.+.+..+.. ..||+|++|...+. -.+.++.+...
T Consensus 79 ~~v~tiD~~~~~~~~A~~~~~~~gl~~~I~~~~gda~d~l~~l~~~~~fD~ifiD~~k~~--~~~~~~~~~~l 149 (233)
T 2gpy_A 79 ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQ--YRRFFDMYSPM 149 (233)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGSC--HHHHHHHHGGG
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCEEEECCCHHH--HHHHHHHHHHH
T ss_conf 779999704899999999999974212112653328777775113577628997276676--89999999834
No 338
>3hvi_A Catechol O-methyltransferase; neurotransmitter degradation, alternative initiation, catecholamine metabolism, cell membrane, cytoplasm; HET: 619; 1.20A {Rattus norvegicus} PDB: 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 2zlb_A 2zth_A* 2zvj_A* 3a7d_A* 3bwm_A* 3bwy_A* 3a7e_A*
Probab=21.47 E-value=42 Score=14.31 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHH----CCCCEEEEEEECCCCC-HHHHHHHHHHHCCC
Q ss_conf 66999759989999999999988989--99-99997999999971----8998999983655999-79999999985899
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVRE----EPFSLLLTDIVMPEMD-GIELARRATELDPD 74 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~~----~~~dlii~D~~mP~~d-G~el~~~ir~~~~~ 74 (122)
.+|.-+|-++......+..++..|+. +. ...+..+.+..+.. ..+|++++|-.-.... -+.+.+..+-..|.
T Consensus 84 g~v~~id~~~~~~~~ar~~~~~agl~~~I~l~~gd~~e~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~~~lL~pG 163 (221)
T 3hvi_A 84 ARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG 163 (221)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCTTTEEEECSCHHHHGGGHHHHHCCSCCSEEEECSCGGGHHHHHHHHHHTTCCCTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCHHCCCHHHHHHHHCCCCCC
T ss_conf 78999988841258999999975997741588377999999877534765325899746702024699999984881888
Q ss_pred CCEEEE
Q ss_conf 859999
Q gi|254780312|r 75 LKVMFI 80 (122)
Q Consensus 75 ~pii~~ 80 (122)
- +|++
T Consensus 164 G-vii~ 168 (221)
T 3hvi_A 164 T-VLLA 168 (221)
T ss_dssp C-EEEE
T ss_pred E-EEEE
T ss_conf 2-9999
No 339
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=21.28 E-value=43 Score=14.29 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=47.8
Q ss_pred CEEEEECCCHH----HHHHHHHHHHHCCCEEEEECC--------------------HHHHHHHHHH--CCCCEEEEEEEC
Q ss_conf 66999759989----999999999988989999999--------------------7999999971--899899998365
Q gi|254780312|r 3 QKILLAEDDDD----MRRFLIKALGKAGYEVVSCNN--------------------GASAYDKVRE--EPFSLLLTDIVM 56 (122)
Q Consensus 3 ~rILiVDD~~~----~r~~l~~~L~~~G~~v~~a~~--------------------g~~al~~~~~--~~~dlii~D~~m 56 (122)
||||+|-|... -.+.--..|+..|+++..+.+ ..+.+..+.. .++|.|.+.+ +
T Consensus 8 k~vl~i~~~~~~G~~g~~a~i~vl~~~G~~~~~v~T~~~s~htg~~~~~~~~~~~~~~~~l~~~~~~~~~~daiktG~-l 86 (291)
T 3mbh_A 8 KKIAAVHDLSGMGRVSLTVVIPILSSMGFQVCPLPTAVLSNHTQYPGFSFLDLTDEMPKIIAEWKKLEVQFDAIYTGY-L 86 (291)
T ss_dssp CEEEEECCEEEESSCTHHHHHHHHHHTTCEEEECCCEEEEECTTSSCCCEEECTTTHHHHHHHHHHTTCCCSEEEECC-C
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEECC-C
T ss_conf 869999378998716999999999986981589617982578999982698596999999999995699979899999-8
Q ss_pred CCCCHHHH-HHHHHHH-CCCCCEEE
Q ss_conf 59997999-9999985-89985999
Q gi|254780312|r 57 PEMDGIEL-ARRATEL-DPDLKVMF 79 (122)
Q Consensus 57 P~~dG~el-~~~ir~~-~~~~pii~ 79 (122)
+...-.+. .+.+++. .|+.++++
T Consensus 87 ~s~~~v~~i~~~l~~~~~~~~~vv~ 111 (291)
T 3mbh_A 87 GSPRQIQIVSDFIKDFRQPDSLIVA 111 (291)
T ss_dssp SSTTHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9999999999999984689856972
No 340
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Helicobacter pylori 26695}
Probab=21.23 E-value=39 Score=14.51 Aligned_cols=31 Identities=10% Similarity=-0.039 Sum_probs=16.6
Q ss_pred HCCCCCEEEEECCCCH--HHHHHHHHCCCCEEE
Q ss_conf 5899859999437978--999999976998699
Q gi|254780312|r 71 LDPDLKVMFITGFAAV--ALNPDSNAPKNAKVL 101 (122)
Q Consensus 71 ~~~~~pii~~s~~~~~--~~~~~~~~~g~~~~l 101 (122)
..++.|++++-..+.. .......+.|...+.
T Consensus 53 ~~k~~~iiv~C~sG~rS~~a~~~L~~~G~~~v~ 85 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYY 85 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 579986899889984899999999985998799
No 341
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehydrogenase, reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=21.15 E-value=43 Score=14.27 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=28.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 86699975998999999999998898999999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~ 33 (122)
+|+|||+--.=.+-..+.+.|...||+|.+..
T Consensus 5 kktIlVtGaTG~iG~~lv~~Ll~~G~~V~~l~ 36 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQV 36 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99899989971899999999995899599997
No 342
>3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=21.08 E-value=43 Score=14.26 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=51.5
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEEEECCH-HHHHHHH-HHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 699975998999999999998-89899999997-9999999-71899899998365599979999999985899859999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGK-AGYEVVSCNNG-ASAYDKV-REEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~-~G~~v~~a~~g-~~al~~~-~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
||-||-=-..-+..+. .++. .++++..+.+. .+..+.+ ++... |..+.++ ++-+ .+++-+|++
T Consensus 7 rvgiIG~G~~~~~h~~-~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~---------~~~~~~~---~ll~-~~~iD~V~i 72 (354)
T 3db2_A 7 GVAAIGLGRWAYVMAD-AYTKSEKLKLVTCYSRTEDKREKFGKRYNC---------AGDATME---ALLA-REDVEMVII 72 (354)
T ss_dssp EEEEECCSHHHHHHHH-HHTTCSSEEEEEEECSSHHHHHHHHHHHTC---------CCCSSHH---HHHH-CSSCCEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHCCCCEEEEEECCCHHHHHHHHHHHCC---------CCCCCHH---HHHC-CCCCCEEEE
T ss_conf 4999938399999999-998589948999988999999999998199---------8338999---9956-999988998
Q ss_pred ECCC--CHHHHHHHHHCCCCEEEECCCC--HHHHHH
Q ss_conf 4379--7899999997699869976979--899999
Q gi|254780312|r 81 TGFA--AVALNPDSNAPKNAKVLSKPFH--LRDLVN 112 (122)
Q Consensus 81 s~~~--~~~~~~~~~~~g~~~~l~KP~~--~~~L~~ 112 (122)
+... ..+....+++.|..-|+.||+. .++..+
T Consensus 73 ~tp~~~h~~~~~~al~~gk~V~~EKP~a~~~~e~~~ 108 (354)
T 3db2_A 73 TVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQR 108 (354)
T ss_dssp CSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 797788888899999789979996686432378888
No 343
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=21.05 E-value=43 Score=14.26 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=59.0
Q ss_pred HHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-------------HHHHHHHHHCCCCCEEEEE
Q ss_conf 999999998898999-99997999999971899899998365599979-------------9999999858998599994
Q gi|254780312|r 16 RFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-------------ELARRATELDPDLKVMFIT 81 (122)
Q Consensus 16 ~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-------------el~~~ir~~~~~~pii~~s 81 (122)
+.+.+ ....|+++. |+.+..++- .+..-.+++| -++-+..-|. +.++.+++..++++++.=.
T Consensus 102 ~~i~~-~~~~gl~~i~Cvge~~~~~-~~~~l~~~ii--AyEPvwaIGtg~~~~~~~~~~i~~~ir~i~~~~~~v~vlygG 177 (219)
T 2h6r_A 102 AVINK-CKNLGLETIVCTNNINTSK-AVAALSPDCI--AVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGA 177 (219)
T ss_dssp HHHHH-HHHHTCEEEEEESSSHHHH-HHTTTCCSEE--EECCCC--------------CSHHHHHHHHHHCTTCEEEECS
T ss_pred HHHHH-HHHCCCEEEEEECCHHHHH-HHHCCCCCEE--EECCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 63889-9878993799847588865-4202577079--866610155797788533999999999999862682023215
Q ss_pred CCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHH
Q ss_conf 379789999999769986997-----69798999999999
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLS-----KPFHLRDLVNEVNR 116 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~L~~~i~~ 116 (122)
+....+....+...|+++++. ||=++.++++.+-+
T Consensus 178 sV~~~n~~~~~~~~~vDG~LVG~aslka~~f~~ii~~l~~ 217 (219)
T 2h6r_A 178 GISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIK 217 (219)
T ss_dssp SCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHHCC
T ss_pred CEECCHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 5404567998524799889962044475639999999997
No 344
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=20.95 E-value=43 Score=14.25 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC--CHHHHH
Q ss_conf 99999999988989999999--79999999718998999983655999799999999858998599994379--789999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCNN--GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA--AVALNP 90 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~~--g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~--~~~~~~ 90 (122)
+..+...+...|+++..+.+ .+.|-+..++....-+. +.+ +++-+ .+++-+|+++..+ ..+...
T Consensus 13 ~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~--------~~~---~e~l~-~~~iD~v~i~tp~~~H~~~~~ 80 (332)
T 2glx_A 13 REWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSV--------TSV---EELVG-DPDVDAVYVSTTNELHREQTL 80 (332)
T ss_dssp HHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCB--------SCH---HHHHT-CTTCCEEEECSCGGGHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEE--------CCH---HHHHC-CCCCCEEEECCCCHHHHHHHH
T ss_conf 999999973899789999849999999999980999401--------899---99956-999999999688446578899
Q ss_pred HHHHCCCCEEEECCCC--HHHHHHH
Q ss_conf 9997699869976979--8999999
Q gi|254780312|r 91 DSNAPKNAKVLSKPFH--LRDLVNE 113 (122)
Q Consensus 91 ~~~~~g~~~~l~KP~~--~~~L~~~ 113 (122)
++++.|..-|+.||+. .++..+-
T Consensus 81 ~al~~gk~v~~EKP~~~~~~e~~~l 105 (332)
T 2glx_A 81 AAIRAGKHVLCEKPLAMTLEDAREM 105 (332)
T ss_dssp HHHHTTCEEEECSSSCSSHHHHHHH
T ss_pred HHHHCCCCEECCCCCHHHHHHHHHH
T ss_conf 9998699875367730357899998
No 345
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} SCOP: c.2.1.2
Probab=20.84 E-value=44 Score=14.23 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=41.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECC-------HHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 6999759989999999999988989999999-------7999999971899899998365599
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNN-------GASAYDKVREEPFSLLLTDIVMPEM 59 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~-------g~~al~~~~~~~~dlii~D~~mP~~ 59 (122)
||||.--.=.+...+...|...||+|....- ...--+.+....||.|+--...+..
T Consensus 14 KILItGatGfIG~~lv~~L~~~g~~V~~~~r~~~dl~~~~~v~~~~~~~~~d~vi~~a~~~~~ 76 (292)
T 1vl0_A 14 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAV 76 (292)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 589989998899999999986879899932312577899999999986499799988633555
No 346
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.77 E-value=44 Score=14.23 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=52.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889899999997-99999997189989999836559-9979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-ASAYDKVREEPFSLLLTDIVMPE-MDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g-~~al~~~~~~~~dlii~D~~mP~-~dG~el~~~ir~~~~~~pii~~ 80 (122)
.++.+||.++.....+ ...|+.+....-. .+.|+.+.-...+.++.-. ++ ..-...+..+|+. +..+++..
T Consensus 30 ~~vvvid~d~~~~~~~----~~~~~~~~~gd~~~~~~L~~~~i~~a~~vi~~~--~~d~~n~~~~~~~k~~-~~~~ii~~ 102 (141)
T 3llv_A 30 KKVLAVDKSKEKIELL----EDEGFDAVIADPTDESFYRSLDLEGVSAVLITG--SDDEFNLKILKALRSV-SDVYAIVR 102 (141)
T ss_dssp CCEEEEESCHHHHHHH----HHTTCEEEECCTTCHHHHHHSCCTTCSEEEECC--SCHHHHHHHHHHHHHH-CCCCEEEE
T ss_pred CCEEEEECCHHHHHHH----HHCCCEEEEECCCCHHHHHHHHHHCCCEEEEEE--CCCHHHHHHHHHHHHC-CCCCEEEE
T ss_conf 9489995719999999----845972999346788888666672388999981--8809999999999855-89988999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 437978999999976998699769798999999999960
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+. +.+........|++..+..+ +...+.+.+.++
T Consensus 103 ~~--~~~~~~~l~~~G~~~vv~~~---~~~~~~i~~~l~ 136 (141)
T 3llv_A 103 VS--SPKKKEEFEEAGANLVVLVA---DAVKQAFMDKIK 136 (141)
T ss_dssp ES--CGGGHHHHHHTTCSEEEEHH---HHHHHHHHHHHH
T ss_pred EC--CHHHHHHHHHCCCCEEECHH---HHHHHHHHHHHH
T ss_conf 86--98899999977989999789---999999999974
No 347
>1d3g_A Dihydroorotate dehydrogenase; protein-antiproliferative agent complex, oxidoreductase; HET: BRE FMN ORO DDQ; 1.60A {Homo sapiens} SCOP: c.1.4.1 PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* 3kvm_A* 2b0m_A* 1uum_A* ...
Probab=20.45 E-value=44 Score=14.18 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=42.6
Q ss_pred HHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCCCEE------EEC-CCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999985-89985999943797899999997699869------976-9798999999999960369
Q gi|254780312|r 62 IELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV------LSK-PFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 62 ~el~~~ir~~-~~~~pii~~s~~~~~~~~~~~~~~g~~~~------l~K-P~~~~~L~~~i~~~l~~~~ 122 (122)
...++.+++. .+++|||-.-|..+.+...+.+..|++.+ +.+ |--..++.+.+.+.|+.++
T Consensus 285 l~~v~~i~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQv~Tal~~~Gp~~i~~I~~~L~~~l~~~G 353 (367)
T 1d3g_A 285 TQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQG 353 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCHHEECHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 899999999748993689989949999999999839986302055672392799999999999999859
No 348
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=20.29 E-value=45 Score=14.16 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=43.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHH--CCCCEEEEEEE
Q ss_conf 66999759989999999999988989-99-99997999999971--89989999836
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-VV-SCNNGASAYDKVRE--EPFSLLLTDIV 55 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v~-~a~~g~~al~~~~~--~~~dlii~D~~ 55 (122)
++|.-||-++...+....-++..|+. +. ...|..+.+..+.. ..||+|++|--
T Consensus 232 ~~V~~vD~s~~al~~a~~n~~~ng~~~~~~~~~D~~~~l~~~~~~~~~fD~VilDpP 288 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 726720463999999999999728688667860177777777862679986998272
No 349
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Geobacter sulfurreducens pca}
Probab=20.24 E-value=45 Score=14.16 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=47.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEE
Q ss_conf 66999759989999999999988989--99-99997999999971899899998365599979999999985-8998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii 78 (122)
-+|.-+|-++...+..+..++..|+. +. ...++.+.+. ...+||+|++|..... -.+.++.+... .|. -++
T Consensus 82 g~v~~id~~~~~~~~ar~~~~~~g~~~~i~~~~gda~~~~~--~~~~fDlifiD~~~~~--~~~~~~~~~~~L~pg-Gvi 156 (210)
T 3c3p_A 82 SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA--GQRDIDILFMDCDVFN--GADVLERMNRCLAKN-ALL 156 (210)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT--TCCSEEEEEEETTTSC--HHHHHHHHGGGEEEE-EEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHCCC--CCCCCCEEEECCCHHH--HHHHHHHHHHHCCCC-CEE
T ss_conf 19999977510378999879872987326786134543022--3688678998575666--799999986044878-599
Q ss_pred EEE
Q ss_conf 994
Q gi|254780312|r 79 FIT 81 (122)
Q Consensus 79 ~~s 81 (122)
++.
T Consensus 157 v~d 159 (210)
T 3c3p_A 157 IAV 159 (210)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 997
No 350
>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A*
Probab=20.21 E-value=45 Score=14.15 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=46.5
Q ss_pred CCCEEEEE-CC--CH---HHHHHHHHHHHHCCCEEEEECCH---H---HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 98669997-59--98---99999999999889899999997---9---99999971899899998365599979999999
Q gi|254780312|r 1 MNQKILLA-ED--DD---DMRRFLIKALGKAGYEVVSCNNG---A---SAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 (122)
Q Consensus 1 M~~rILiV-DD--~~---~~r~~l~~~L~~~G~~v~~a~~g---~---~al~~~~~~~~dlii~D~~mP~~dG~el~~~i 68 (122)
|+.||=|| .+ |+ .+...+...+...||++..+.+. . +.++.+.+..+|.+++-..-+ ..-...++++
T Consensus 1 ~~g~Igvvvp~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~-~~~~~~l~~~ 79 (290)
T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDA-DGSIANVKRA 79 (290)
T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCT-TTTHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCHHHHHHH
T ss_conf 989899992889899999999999999998699899996999989999999999974998553013332-1108999999
Q ss_pred HHHCCCCCEEEEE
Q ss_conf 9858998599994
Q gi|254780312|r 69 TELDPDLKVMFIT 81 (122)
Q Consensus 69 r~~~~~~pii~~s 81 (122)
.+ ..+|++.+-
T Consensus 80 ~~--~gipvV~~~ 90 (290)
T 2fn9_A 80 KE--AGIPVFCVD 90 (290)
T ss_dssp HH--TTCCEEEES
T ss_pred HH--CCCEEEEEC
T ss_conf 85--698399965
No 351
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=20.15 E-value=45 Score=14.15 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9859999437978999999976998699769798999999999960
Q gi|254780312|r 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 74 ~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
.+|+|. |..+ ...+..+.|.++++..|-+.+.|.++|.++++
T Consensus 382 G~PVI~-s~~g---g~~e~v~~g~~G~lv~~~d~~~la~ai~~ll~ 423 (499)
T 2r60_A 382 GLPAVV-TRNG---GPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp TCCEEE-ESSB---HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CCCEEE-CCCC---CHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 998999-1799---87999648974999789999999999999987
No 352
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=20.13 E-value=45 Score=14.14 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=55.6
Q ss_pred EEEE-CCCHHHHHHHHHHHHHC--CCEEEEE------------------CCH-----HHHHHHHHHCCCCEEEEEE--EC
Q ss_conf 9997-59989999999999988--9899999------------------997-----9999999718998999983--65
Q gi|254780312|r 5 ILLA-EDDDDMRRFLIKALGKA--GYEVVSC------------------NNG-----ASAYDKVREEPFSLLLTDI--VM 56 (122)
Q Consensus 5 ILiV-DD~~~~r~~l~~~L~~~--G~~v~~a------------------~~g-----~~al~~~~~~~~dlii~D~--~m 56 (122)
-||+ |.+....--+...+... ||++.+. ..+ .+..+++.++..|+||-=. .-
T Consensus 31 AlIAhD~dK~~lv~~ak~~~~lL~Gf~LvAT~GTa~~L~e~ggl~v~~v~~~~~gg~p~I~d~I~~geI~lVINt~d~~~ 110 (178)
T 1vmd_A 31 ALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPLE 110 (178)
T ss_dssp EEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECCSSS
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEECCCCCC
T ss_conf 89853277499999999999996497499705389999873597489864037888852999998698218998169977
Q ss_pred ---CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHH
Q ss_conf ---59997999999998589985999943797899999997-69986997697989999999999
Q gi|254780312|r 57 ---PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 57 ---P~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~L~~~i~~~ 117 (122)
...||+.+.+..-. .++| ++|.....+...+++. .....+-.|+|+ +-+-++++.+
T Consensus 111 ~~~~~~D~~~IRR~av~--~~IP--~~Ttl~tA~a~i~ai~~~~~~~~~v~~~q-ey~~~r~~~~ 170 (178)
T 1vmd_A 111 PQAHDVDVKALIRIATV--YNIP--VAITRSTADFLISSPLMNDVYEKIQIDYE-EELERRIRKV 170 (178)
T ss_dssp CCTTSCCHHHHHHHHHH--TTCC--EESSHHHHHHHHHSGGGGSCEEEEEECHH-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--HCCC--EEECHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHHHHHHH
T ss_conf 77660269999999998--4972--35469999999998974677775778889-9999999876
Done!