BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] (122 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] gi|254039989|gb|ACT56785.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 247 bits (630), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD Sbjct: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 Query: 121 KN 122 KN Sbjct: 121 KN 122 >gi|315122264|ref|YP_004062753.1| response regulator receiver protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495666|gb|ADR52265.1| response regulator receiver protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 120 Score = 233 bits (595), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 112/120 (93%), Positives = 118/120 (98%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDD+DMRRFLIKALG AGYEV+SCNNGASAYDK+REEPFSLLLTDIVMPEMD Sbjct: 1 MNQKILLAEDDNDMRRFLIKALGNAGYEVISCNNGASAYDKIREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIELAR+ATELDPDLKVMFITGFAAV+LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL + Sbjct: 61 GIELARKATELDPDLKVMFITGFAAVSLNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLAV 120 >gi|86359166|ref|YP_471058.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|116253830|ref|YP_769668.1| two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|190893412|ref|YP_001979954.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|209550901|ref|YP_002282818.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218463813|ref|ZP_03503904.1| response regulator receiver protein [Rhizobium etli Kim 5] gi|218510775|ref|ZP_03508653.1| response regulator receiver protein [Rhizobium etli Brasil 5] gi|218663747|ref|ZP_03519677.1| response regulator receiver protein [Rhizobium etli IE4771] gi|218674800|ref|ZP_03524469.1| response regulator receiver protein [Rhizobium etli GR56] gi|218678100|ref|ZP_03525997.1| response regulator receiver protein [Rhizobium etli CIAT 894] gi|241206312|ref|YP_002977408.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|86283268|gb|ABC92331.1| probable two-component response regulator protein [Rhizobium etli CFN 42] gi|115258478|emb|CAK09582.1| putative two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|190698691|gb|ACE92776.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] gi|209536657|gb|ACI56592.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240860202|gb|ACS57869.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|327189628|gb|EGE56778.1| two-component response regulator protein [Rhizobium etli CNPAF512] Length = 120 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 103/119 (86%), Positives = 114/119 (95%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKILLAEDD+DMRRFL+KAL KAGY+V+S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MTQKILLAEDDNDMRRFLVKALEKAGYKVLSYDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLV+EVN++L Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVDEVNKMLA 119 >gi|222149748|ref|YP_002550705.1| chemotaxis response regulator [Agrobacterium vitis S4] gi|221736730|gb|ACM37693.1| chemotaxis response regulator [Agrobacterium vitis S4] Length = 121 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/119 (87%), Positives = 113/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKILLAEDD+DMRRFL+KAL KAGY+V S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MTQKILLAEDDNDMRRFLVKALEKAGYKVSSYDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALN DS APK+AKVLSKPFHLRDLV+EVN+LLT Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNADSKAPKDAKVLSKPFHLRDLVDEVNKLLT 119 >gi|222087102|ref|YP_002545637.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724550|gb|ACM27706.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 121 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/119 (86%), Positives = 114/119 (95%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKILLAEDD+DMRRFL+KAL KAGY+V+S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 2 MTQKILLAEDDNDMRRFLVKALEKAGYKVLSFDNGASAYDRLREEPFSLLLTDIVMPEMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLR+LV+EVN+LL Sbjct: 62 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRELVDEVNKLLA 120 >gi|332716601|ref|YP_004444067.1| chemotaxis response regulator [Agrobacterium sp. H13-3] gi|325063286|gb|ADY66976.1| chemotaxis response regulator [Agrobacterium sp. H13-3] Length = 121 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/119 (87%), Positives = 113/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDD+DMRRFL+KAL KAGY+V S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 2 MNQKILLAEDDNDMRRFLVKALEKAGYKVSSFDNGASAYDRLREEPFSLLLTDIVMPEMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALN DS APK+AKVLSKPFHLRDLV+EVN+LL Sbjct: 62 GIELARRATELDPDLKVMFITGFAAVALNADSKAPKDAKVLSKPFHLRDLVDEVNKLLV 120 >gi|15966580|ref|NP_386933.1| putative 2-component receiver domain protein [Sinorhizobium meliloti 1021] gi|150397917|ref|YP_001328384.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|307300385|ref|ZP_07580165.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] gi|307318250|ref|ZP_07597685.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|15075852|emb|CAC47406.1| Single domain response regulator [Sinorhizobium meliloti 1021] gi|150029432|gb|ABR61549.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|306895932|gb|EFN26683.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|306904551|gb|EFN35135.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] Length = 120 Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/119 (86%), Positives = 113/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAEDD+DMRRFL+KAL KAGY+V+S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MTAKILLAEDDNDMRRFLVKALEKAGYKVLSYDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEVN++L Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVNKMLA 119 >gi|159185932|ref|NP_356752.2| chemotaxis response regulator [Agrobacterium tumefaciens str. C58] gi|159141066|gb|AAK89537.2| chemotaxis response regulator [Agrobacterium tumefaciens str. C58] Length = 120 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/119 (87%), Positives = 113/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDD+DMRRFL+KAL KAGY+V S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MNQKILLAEDDNDMRRFLVKALEKAGYKVSSFDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALN DS APK+AKVLSKPFHLRDLV+EVN+LL Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNADSKAPKDAKVLSKPFHLRDLVDEVNKLLV 119 >gi|227823401|ref|YP_002827374.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227342403|gb|ACP26621.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] Length = 120 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/119 (86%), Positives = 113/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAEDD+DMRRFL+KAL KAGY+V+S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MTVKILLAEDDNDMRRFLVKALEKAGYKVLSYDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEVN++L Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVNKMLA 119 >gi|163758886|ref|ZP_02165973.1| putative two component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162284176|gb|EDQ34460.1| putative two component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 121 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/119 (84%), Positives = 112/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAEDD+DMRRFL+KAL KAGYEV S +NGASAYD++REEPF+LLLTDIVMPEMD Sbjct: 1 MTPKILLAEDDNDMRRFLVKALEKAGYEVRSFDNGASAYDRLREEPFNLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS AP++AKVLSKPFHLRDLV+EVN+++ Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPRDAKVLSKPFHLRDLVDEVNKMIV 119 >gi|260460614|ref|ZP_05808865.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] gi|319781598|ref|YP_004141074.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259033719|gb|EEW34979.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] gi|317167486|gb|ADV11024.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 120 Score = 203 bits (516), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 97/115 (84%), Positives = 109/115 (94%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDDDMRRFL+KAL +AGY+V +NGASAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDDDMRRFLVKALERAGYQVSDFDNGASAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LARRATE+DPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEV ++L Sbjct: 63 LARRATEIDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVEKML 117 >gi|13472672|ref|NP_104239.1| chemotaxis response regulator [Mesorhizobium loti MAFF303099] gi|14023419|dbj|BAB50025.1| chemotaxis response regulator [Mesorhizobium loti MAFF303099] Length = 120 Score = 203 bits (516), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 97/115 (84%), Positives = 109/115 (94%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDDDMRRFL+KAL +AGY+V +NGASAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDDDMRRFLVKALERAGYQVSDFDNGASAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LARRATE+DPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEV ++L Sbjct: 63 LARRATEIDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVEKML 117 >gi|90418876|ref|ZP_01226787.1| response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336956|gb|EAS50661.1| response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 121 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/116 (84%), Positives = 109/116 (93%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL KAL +AGYEVVS +NG SAY+++REEPFSLLLTDIVMPEMDGI Sbjct: 2 SKILLAEDDNDMRRFLAKALERAGYEVVSYDNGGSAYERLREEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATELDPDLKVMFITGFAAVALNPDS APK+AK+LSKPFHLR+LV+EV R+L Sbjct: 62 ELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKILSKPFHLRELVDEVARML 117 >gi|110635084|ref|YP_675292.1| response regulator receiver protein [Mesorhizobium sp. BNC1] gi|110286068|gb|ABG64127.1| response regulator receiver protein [Chelativorans sp. BNC1] Length = 120 Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 96/115 (83%), Positives = 108/115 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDDDMRRFL+KAL +AGYEVV +NGA AY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDDDMRRFLVKALERAGYEVVDFDNGAGAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LARRATE+DPDLKVMFITGFAAVALNPDS AP++AKVLSKPFHLR+LV EV +LL Sbjct: 63 LARRATEIDPDLKVMFITGFAAVALNPDSKAPRDAKVLSKPFHLRELVTEVEKLL 117 >gi|153011599|ref|YP_001372813.1| response regulator receiver protein [Ochrobactrum anthropi ATCC 49188] gi|239834517|ref|ZP_04682845.1| response regulator receiver protein [Ochrobactrum intermedium LMG 3301] gi|151563487|gb|ABS16984.1| response regulator receiver protein [Ochrobactrum anthropi ATCC 49188] gi|239822580|gb|EEQ94149.1| response regulator receiver protein [Ochrobactrum intermedium LMG 3301] Length = 130 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 93/116 (80%), Positives = 110/116 (94%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL KAGY V +NGASAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 12 KRILLAEDDNDMRRFLVKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGI 71 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDLK+MFITGFAAVALNPDS+AP++AKVLSKPFHLRDLVNE+ ++L Sbjct: 72 ELARRATEIDPDLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 127 >gi|254720702|ref|ZP_05182513.1| response regulator receiver protein [Brucella sp. 83/13] gi|265985753|ref|ZP_06098488.1| response regulator receiver protein [Brucella sp. 83/13] gi|306839345|ref|ZP_07472161.1| response regulator [Brucella sp. NF 2653] gi|264664345|gb|EEZ34606.1| response regulator receiver protein [Brucella sp. 83/13] gi|306405593|gb|EFM61856.1| response regulator [Brucella sp. NF 2653] Length = 120 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 94/116 (81%), Positives = 110/116 (94%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFLIKAL KAGY V +NGASAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLIKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDLK+MFITGFAAVALNPDS+AP++AKVLSKPFHLRDLVNE+ ++L Sbjct: 62 ELARRATEIDPDLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 117 >gi|114707568|ref|ZP_01440464.1| probable two-component response regulator protein [Fulvimarina pelagi HTCC2506] gi|114537127|gb|EAU40255.1| probable two-component response regulator protein [Fulvimarina pelagi HTCC2506] Length = 121 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 97/115 (84%), Positives = 108/115 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL KAL +AGY VVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 KILLAEDDNDMRRFLAKALERAGYNVVSFDNGGSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LARRATELDPDLKVMFITGFAAVALNPDS APK+AK+LSKPFHLR+LV+EV R+L Sbjct: 63 LARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKILSKPFHLRELVDEVGRML 117 >gi|217977418|ref|YP_002361565.1| response regulator receiver protein [Methylocella silvestris BL2] gi|217502794|gb|ACK50203.1| response regulator receiver protein [Methylocella silvestris BL2] Length = 138 Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 97/119 (81%), Positives = 107/119 (89%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD DMRRFL KAL AGY+V + +NG SAY ++REEPF LLLTDIVMPEMDGIE Sbjct: 16 KILLAEDDGDMRRFLGKALQNAGYQVAAFDNGLSAYSRLREEPFELLLTDIVMPEMDGIE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 LARRATELDPD+KVMFITGFAAVALNPD+NAP AKVLSKPFHL+DLVNEV RLLT++N Sbjct: 76 LARRATELDPDIKVMFITGFAAVALNPDNNAPPQAKVLSKPFHLKDLVNEVQRLLTVEN 134 >gi|17988394|ref|NP_541027.1| sensory transduction histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|23499810|ref|NP_699250.1| response regulator [Brucella suis 1330] gi|62317002|ref|YP_222855.1| response regulator [Brucella abortus bv. 1 str. 9-941] gi|83268996|ref|YP_418287.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148558406|ref|YP_001257123.1| response regulator [Brucella ovis ATCC 25840] gi|161620133|ref|YP_001594019.1| hypothetical protein BCAN_B0046 [Brucella canis ATCC 23365] gi|163844241|ref|YP_001621896.1| hypothetical protein BSUIS_B0046 [Brucella suis ATCC 23445] gi|189022273|ref|YP_001932014.1| Response regulator receiver [Brucella abortus S19] gi|225628524|ref|ZP_03786558.1| sensory transduction histidine kinase [Brucella ceti str. Cudo] gi|225685910|ref|YP_002733882.1| hypothetical protein BMEA_B0046 [Brucella melitensis ATCC 23457] gi|237816565|ref|ZP_04595557.1| sensory transduction histidine kinase [Brucella abortus str. 2308 A] gi|254691510|ref|ZP_05154764.1| response regulator receiver protein [Brucella abortus bv. 6 str. 870] gi|254695194|ref|ZP_05157022.1| response regulator receiver protein [Brucella abortus bv. 3 str. Tulya] gi|254698294|ref|ZP_05160122.1| response regulator receiver protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699362|ref|ZP_05161190.1| response regulator receiver protein [Brucella suis bv. 5 str. 513] gi|254702482|ref|ZP_05164310.1| response regulator receiver protein [Brucella suis bv. 3 str. 686] gi|254706395|ref|ZP_05168223.1| response regulator receiver protein [Brucella pinnipedialis M163/99/10] gi|254711316|ref|ZP_05173127.1| response regulator receiver protein [Brucella pinnipedialis B2/94] gi|254711916|ref|ZP_05173727.1| response regulator receiver protein [Brucella ceti M644/93/1] gi|254714986|ref|ZP_05176797.1| response regulator receiver protein [Brucella ceti M13/05/1] gi|254731736|ref|ZP_05190314.1| response regulator receiver protein [Brucella abortus bv. 4 str. 292] gi|256014838|ref|YP_003104847.1| response regulator [Brucella microti CCM 4915] gi|256030055|ref|ZP_05443669.1| response regulator receiver protein [Brucella pinnipedialis M292/94/1] gi|256042972|ref|ZP_05445918.1| response regulator receiver protein [Brucella melitensis bv. 1 str. Rev.1] gi|256059706|ref|ZP_05449901.1| response regulator receiver protein [Brucella neotomae 5K33] gi|256112054|ref|ZP_05452990.1| response regulator receiver protein [Brucella melitensis bv. 3 str. Ether] gi|256158227|ref|ZP_05456136.1| response regulator receiver protein [Brucella ceti M490/95/1] gi|256252832|ref|ZP_05458368.1| response regulator receiver protein [Brucella ceti B1/94] gi|256256696|ref|ZP_05462232.1| response regulator receiver protein [Brucella abortus bv. 9 str. C68] gi|256261874|ref|ZP_05464406.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260166895|ref|ZP_05753706.1| response regulator receiver protein [Brucella sp. F5/99] gi|260544242|ref|ZP_05820063.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260564205|ref|ZP_05834690.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260568613|ref|ZP_05839082.1| response regulator receiver [Brucella suis bv. 4 str. 40] gi|260757134|ref|ZP_05869482.1| response regulator receiver protein [Brucella abortus bv. 6 str. 870] gi|260759496|ref|ZP_05871844.1| response regulator receiver protein [Brucella abortus bv. 4 str. 292] gi|260762740|ref|ZP_05875072.1| response regulator receiver protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882944|ref|ZP_05894558.1| response regulator receiver protein [Brucella abortus bv. 9 str. C68] gi|261215552|ref|ZP_05929833.1| response regulator receiver protein [Brucella abortus bv. 3 str. Tulya] gi|261216683|ref|ZP_05930964.1| response regulator receiver protein [Brucella ceti M13/05/1] gi|261219915|ref|ZP_05934196.1| response regulator receiver protein [Brucella ceti B1/94] gi|261313844|ref|ZP_05953041.1| response regulator receiver protein [Brucella pinnipedialis M163/99/10] gi|261318916|ref|ZP_05958113.1| response regulator receiver protein [Brucella pinnipedialis B2/94] gi|261319551|ref|ZP_05958748.1| response regulator receiver protein [Brucella ceti M644/93/1] gi|261323682|ref|ZP_05962879.1| response regulator receiver protein [Brucella neotomae 5K33] gi|261749808|ref|ZP_05993517.1| response regulator receiver protein [Brucella suis bv. 5 str. 513] gi|261753051|ref|ZP_05996760.1| response regulator receiver protein [Brucella suis bv. 3 str. 686] gi|261756276|ref|ZP_05999985.1| response regulator receiver [Brucella sp. F5/99] gi|265987081|ref|ZP_06099638.1| response regulator receiver protein [Brucella pinnipedialis M292/94/1] gi|265989404|ref|ZP_06101961.1| response regulator receiver protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993496|ref|ZP_06106053.1| response regulator receiver protein [Brucella melitensis bv. 3 str. Ether] gi|265996742|ref|ZP_06109299.1| response regulator receiver protein [Brucella ceti M490/95/1] gi|294853073|ref|ZP_06793745.1| response regulator [Brucella sp. NVSL 07-0026] gi|297250054|ref|ZP_06933755.1| response regulator [Brucella abortus bv. 5 str. B3196] gi|306841233|ref|ZP_07473948.1| response regulator [Brucella sp. BO2] gi|306845393|ref|ZP_07477968.1| response regulator [Brucella sp. BO1] gi|17984174|gb|AAL53291.1| sensory transduction histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|23463377|gb|AAN33255.1| response regulator [Brucella suis 1330] gi|62197195|gb|AAX75494.1| response regulator [Brucella abortus bv. 1 str. 9-941] gi|82939270|emb|CAJ12208.1| Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148369691|gb|ABQ62563.1| response regulator [Brucella ovis ATCC 25840] gi|161336944|gb|ABX63248.1| Hypothetical protein BCAN_B0046 [Brucella canis ATCC 23365] gi|163674964|gb|ABY39074.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020847|gb|ACD73568.1| Response regulator receiver [Brucella abortus S19] gi|225616370|gb|EEH13418.1| sensory transduction histidine kinase [Brucella ceti str. Cudo] gi|225642015|gb|ACO01928.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237787378|gb|EEP61594.1| sensory transduction histidine kinase [Brucella abortus str. 2308 A] gi|255997498|gb|ACU49185.1| response regulator [Brucella microti CCM 4915] gi|260097513|gb|EEW81387.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260151848|gb|EEW86941.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260155278|gb|EEW90359.1| response regulator receiver [Brucella suis bv. 4 str. 40] gi|260669814|gb|EEX56754.1| response regulator receiver protein [Brucella abortus bv. 4 str. 292] gi|260673161|gb|EEX59982.1| response regulator receiver protein [Brucella abortus bv. 2 str. 86/8/59] gi|260677242|gb|EEX64063.1| response regulator receiver protein [Brucella abortus bv. 6 str. 870] gi|260872472|gb|EEX79541.1| response regulator receiver protein [Brucella abortus bv. 9 str. C68] gi|260917159|gb|EEX84020.1| response regulator receiver protein [Brucella abortus bv. 3 str. Tulya] gi|260918499|gb|EEX85152.1| response regulator receiver protein [Brucella ceti B1/94] gi|260921772|gb|EEX88340.1| response regulator receiver protein [Brucella ceti M13/05/1] gi|261292241|gb|EEX95737.1| response regulator receiver protein [Brucella ceti M644/93/1] gi|261298139|gb|EEY01636.1| response regulator receiver protein [Brucella pinnipedialis B2/94] gi|261299662|gb|EEY03159.1| response regulator receiver protein [Brucella neotomae 5K33] gi|261302870|gb|EEY06367.1| response regulator receiver protein [Brucella pinnipedialis M163/99/10] gi|261736260|gb|EEY24256.1| response regulator receiver [Brucella sp. F5/99] gi|261739561|gb|EEY27487.1| response regulator receiver protein [Brucella suis bv. 5 str. 513] gi|261742804|gb|EEY30730.1| response regulator receiver protein [Brucella suis bv. 3 str. 686] gi|262551039|gb|EEZ07200.1| response regulator receiver protein [Brucella ceti M490/95/1] gi|262764366|gb|EEZ10398.1| response regulator receiver protein [Brucella melitensis bv. 3 str. Ether] gi|263000073|gb|EEZ12763.1| response regulator receiver protein [Brucella melitensis bv. 1 str. Rev.1] gi|263091354|gb|EEZ15890.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|264659278|gb|EEZ29539.1| response regulator receiver protein [Brucella pinnipedialis M292/94/1] gi|294818728|gb|EFG35728.1| response regulator [Brucella sp. NVSL 07-0026] gi|297173923|gb|EFH33287.1| response regulator [Brucella abortus bv. 5 str. B3196] gi|306274309|gb|EFM56121.1| response regulator [Brucella sp. BO1] gi|306288755|gb|EFM60077.1| response regulator [Brucella sp. BO2] Length = 120 Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 93/116 (80%), Positives = 110/116 (94%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL KAGY V +NGASAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLVKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDLK+MFITGFAAVALNPDS+AP++AKVLSKPFHLRDLVNE+ ++L Sbjct: 62 ELARRATEIDPDLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 117 >gi|304393418|ref|ZP_07375346.1| response regulator receiver protein [Ahrensia sp. R2A130] gi|303294425|gb|EFL88797.1| response regulator receiver protein [Ahrensia sp. R2A130] Length = 119 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 95/116 (81%), Positives = 109/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL +AL AGY+V+S +NGASAY+++REEPF+LLLTDIVMPEMDGIE Sbjct: 3 KILLAEDDNDMRRFLARALANAGYDVISYDNGASAYERLREEPFTLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPDLKVMFITGFAAVALN +S+APK+AKVLSKPFHLRDLVNEV ++L Sbjct: 63 LARRATELDPDLKVMFITGFAAVALNAESDAPKDAKVLSKPFHLRDLVNEVEKMLA 118 >gi|163852691|ref|YP_001640734.1| response regulator receiver [Methylobacterium extorquens PA1] gi|170746493|ref|YP_001752753.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] gi|188582714|ref|YP_001926159.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|218531532|ref|YP_002422348.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] gi|240140025|ref|YP_002964502.1| putative response regulator receiver; CheY-like protein [Methylobacterium extorquens AM1] gi|254562452|ref|YP_003069547.1| response regulator receiver; CheY-like protein [Methylobacterium extorquens DM4] gi|163664296|gb|ABY31663.1| response regulator receiver [Methylobacterium extorquens PA1] gi|170653015|gb|ACB22070.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] gi|179346212|gb|ACB81624.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|218523835|gb|ACK84420.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] gi|240009999|gb|ACS41225.1| putative response regulator receiver; CheY-like protein [Methylobacterium extorquens AM1] gi|254269730|emb|CAX25702.1| putative response regulator receiver; CheY-like protein [Methylobacterium extorquens DM4] Length = 118 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/116 (83%), Positives = 107/116 (92%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL KAL AGY+V+S +NG SAY+++REEPF LLLTDIVMPEMDGIE Sbjct: 2 KILLAEDDNDMRRFLAKALQNAGYDVLSFDNGLSAYNRLREEPFELLLTDIVMPEMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPD+KVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEV +LL Sbjct: 62 LARRATELDPDIKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVEKLLA 117 >gi|328542479|ref|YP_004302588.1| Response regulator receiver domain protein (CheY-like) [polymorphum gilvum SL003B-26A1] gi|326412226|gb|ADZ69289.1| Response regulator receiver domain protein (CheY-like) [Polymorphum gilvum SL003B-26A1] Length = 122 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 95/116 (81%), Positives = 108/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMRRFL KAL AG++VVS +NG SAY+++REEPF+LLLTDIVMPEMDGIE Sbjct: 6 RILLAEDDNDMRRFLAKALENAGHDVVSFDNGRSAYERLREEPFALLLTDIVMPEMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRAT+LDPDLKVMFITGFAAVALNPDSNAPK+AKVLSKPFHL+DLV EV R+L Sbjct: 66 LARRATQLDPDLKVMFITGFAAVALNPDSNAPKDAKVLSKPFHLKDLVQEVERMLA 121 >gi|254504327|ref|ZP_05116478.1| response regulator receiver domain, putative [Labrenzia alexandrii DFL-11] gi|222440398|gb|EEE47077.1| response regulator receiver domain, putative [Labrenzia alexandrii DFL-11] Length = 119 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 95/116 (81%), Positives = 108/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMRRFL KAL AGY+VVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDNDMRRFLAKALENAGYDVVSFDNGKSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRAT+LDPDLKVMFITGFAAVALNP+S+APK+AKVLSKPFHL+DLV EV R+L Sbjct: 63 LARRATQLDPDLKVMFITGFAAVALNPESDAPKDAKVLSKPFHLKDLVQEVERMLA 118 >gi|298292675|ref|YP_003694614.1| response regulator receiver protein [Starkeya novella DSM 506] gi|296929186|gb|ADH89995.1| response regulator receiver protein [Starkeya novella DSM 506] Length = 119 Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 96/116 (82%), Positives = 104/116 (89%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD DMRRFL+KAL AGYEVV +NG SAYD++REEPF LLLTDIVMPEMDGIE Sbjct: 3 KILLAEDDHDMRRFLVKALQNAGYEVVDFDNGRSAYDRLREEPFELLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPD+KVMFITGFAAVALN S APK+AKVLSKPFHLRDLVNEV ++L Sbjct: 63 LARRATELDPDIKVMFITGFAAVALNAGSQAPKDAKVLSKPFHLRDLVNEVGKMLA 118 >gi|170743321|ref|YP_001771976.1| response regulator receiver protein [Methylobacterium sp. 4-46] gi|220925780|ref|YP_002501082.1| response regulator receiver protein [Methylobacterium nodulans ORS 2060] gi|168197595|gb|ACA19542.1| response regulator receiver protein [Methylobacterium sp. 4-46] gi|219950387|gb|ACL60779.1| response regulator receiver protein [Methylobacterium nodulans ORS 2060] Length = 118 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/116 (81%), Positives = 106/116 (91%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL KAL AGY+V S +NG SAY+++REEPF LLLTDIVMPEMDGIE Sbjct: 2 KILLAEDDNDMRRFLAKALQNAGYDVASFDNGLSAYNRLREEPFELLLTDIVMPEMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPD+KVMFITGFAAVALNPDS APK+AKVLSKPFHLR+LVNEV +L+ Sbjct: 62 LARRATELDPDIKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRELVNEVEKLMA 117 >gi|154246755|ref|YP_001417713.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] gi|154160840|gb|ABS68056.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] Length = 120 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 94/116 (81%), Positives = 104/116 (89%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL+KAL AGY V SC+NG SAY+++REEPF LLLTDIVMPEMDGIE Sbjct: 3 KILLAEDDNDMRRFLVKALQNAGYSVASCDNGRSAYERMREEPFELLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPDLKVMFITGFAAVALN D+ AP AKVLSKPFHLRDLV+EV ++L Sbjct: 63 LARRATELDPDLKVMFITGFAAVALNADNEAPSEAKVLSKPFHLRDLVSEVGKMLA 118 >gi|118588395|ref|ZP_01545804.1| Response regulator receiver [Stappia aggregata IAM 12614] gi|118439101|gb|EAV45733.1| Response regulator receiver [Stappia aggregata IAM 12614] Length = 119 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/116 (81%), Positives = 108/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMRRFL KAL AG++VVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDNDMRRFLAKALENAGHDVVSFDNGRSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPDLKVMFITGFAAVALNP+S+APK+AKVLSKPFHL+DLV EV R+L Sbjct: 63 LARRATELDPDLKVMFITGFAAVALNPESDAPKDAKVLSKPFHLKDLVQEVERMLA 118 >gi|323136231|ref|ZP_08071313.1| response regulator receiver protein [Methylocystis sp. ATCC 49242] gi|322398305|gb|EFY00825.1| response regulator receiver protein [Methylocystis sp. ATCC 49242] Length = 124 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 92/115 (80%), Positives = 104/115 (90%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL+KAL +AG+ V S +NG SAYD++R EPF LLLTDIVMPEMDGIE Sbjct: 8 KILLAEDDNDMRRFLVKALQQAGFSVSSFDNGLSAYDQLRVEPFELLLTDIVMPEMDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LARRATELDPD+KVMFITGFAAVALNPD+ AP+ AK+LSKPFHLRDLV EV R+L Sbjct: 68 LARRATELDPDIKVMFITGFAAVALNPDNQAPRQAKILSKPFHLRDLVTEVQRML 122 >gi|307944474|ref|ZP_07659814.1| response regulator receiver protein [Roseibium sp. TrichSKD4] gi|307772223|gb|EFO31444.1| response regulator receiver protein [Roseibium sp. TrichSKD4] Length = 119 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 92/116 (79%), Positives = 109/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMRRFL KAL AG++VVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDNDMRRFLAKALENAGHDVVSFDNGKSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRAT+LDPDLKVMFITGFAAVALNP+S+APK+AKVLSKPFHL+DLV EV ++++ Sbjct: 63 LARRATQLDPDLKVMFITGFAAVALNPESDAPKDAKVLSKPFHLKDLVQEVEKMMS 118 >gi|182680539|ref|YP_001834685.1| response regulator receiver protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636422|gb|ACB97196.1| response regulator receiver protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 127 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 94/116 (81%), Positives = 105/116 (90%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL KAL AG+EV +NG +AY+++REEPF LLLTDIVMPEMDGIE Sbjct: 11 KILLAEDDNDMRRFLTKALENAGFEVSPHDNGLAAYNRLREEPFELLLTDIVMPEMDGIE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA+RATELDPD+KVMFITGFAAVALNPD++APK AKVLSKPFHLRDLVNEV RLL Sbjct: 71 LAKRATELDPDIKVMFITGFAAVALNPDNHAPKQAKVLSKPFHLRDLVNEVQRLLA 126 >gi|296445928|ref|ZP_06887879.1| response regulator receiver protein [Methylosinus trichosporium OB3b] gi|296256596|gb|EFH03672.1| response regulator receiver protein [Methylosinus trichosporium OB3b] Length = 124 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/119 (76%), Positives = 106/119 (89%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ KILLAEDD+DMRRFL++AL AG+ V S +NG +AYD++R EPF LLLTDIVMPEMD Sbjct: 5 ISAKILLAEDDNDMRRFLVRALQTAGFAVKSFDNGLAAYDQLRVEPFELLLTDIVMPEMD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDP++KVMFITGFAAVALNPD+ AP+ AK+LSKPFHLRDLVNEV RLL Sbjct: 65 GIELARRATELDPEIKVMFITGFAAVALNPDNQAPRQAKILSKPFHLRDLVNEVQRLLA 123 >gi|209884095|ref|YP_002287952.1| response regulator receiver domain protein [Oligotropha carboxidovorans OM5] gi|209872291|gb|ACI92087.1| response regulator receiver domain protein [Oligotropha carboxidovorans OM5] Length = 122 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/119 (75%), Positives = 106/119 (89%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + KILLAEDD+DMRRFL+KAL AG++V S +NG SAY ++REEPF +LLTDIVMPEMD Sbjct: 3 IQHKILLAEDDNDMRRFLVKALENAGFQVSSYDNGLSAYQRLREEPFEMLLTDIVMPEMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRA+ELDPD+K+MFITGFAAVALN DS APKNAKVL+KP HLR+LV+EVN+LL Sbjct: 63 GIELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLA 121 >gi|158425894|ref|YP_001527186.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158332783|dbj|BAF90268.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 122 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/117 (79%), Positives = 103/117 (88%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL+KAL AGY+V S +NG SAY+++REEPF LLLTDIVMPEMDGI Sbjct: 4 SKILLAEDDNDMRRFLVKALQNAGYQVASFDNGRSAYERMREEPFELLLTDIVMPEMDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRATELDPDLKVMFITGFAAVALN D AP AKVLSKPFHLRDLV EV+++L Sbjct: 64 ELARRATELDPDLKVMFITGFAAVALNADVEAPCEAKVLSKPFHLRDLVTEVHKILA 120 >gi|86751613|ref|YP_488109.1| response regulator receiver domain-containing protein [Rhodopseudomonas palustris HaA2] gi|91978815|ref|YP_571474.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|86574641|gb|ABD09198.1| response regulator receiver domain protein [Rhodopseudomonas palustris HaA2] gi|91685271|gb|ABE41573.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 119 Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/117 (76%), Positives = 105/117 (89%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL+KAL AG++V S +NG SAY ++REEPF +LLTDIVMPEMDGI Sbjct: 2 HKILLAEDDNDMRRFLVKALENAGFQVSSFDNGMSAYQRLREEPFEMLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRA+ELDPD+K+MFITGFAAVALN DS APKNAKVLSKP HLR+LV+EVN++L Sbjct: 62 ELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLA 118 >gi|299132145|ref|ZP_07025340.1| response regulator receiver protein [Afipia sp. 1NLS2] gi|298592282|gb|EFI52482.1| response regulator receiver protein [Afipia sp. 1NLS2] Length = 122 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 89/119 (74%), Positives = 106/119 (89%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + KILLAEDD+DMRRFL+KAL AG++V S +NG SAY ++REEPF +LLTDIVMPEMD Sbjct: 3 IQHKILLAEDDNDMRRFLVKALENAGFQVSSYDNGLSAYQRLREEPFEMLLTDIVMPEMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRA+ELDPD+K+MFITGFAAVALN DS APKNAKVL+KP HLR+LV+EVN++L Sbjct: 63 GIELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKMLA 121 >gi|163868485|ref|YP_001609694.1| response regulator [Bartonella tribocorum CIP 105476] gi|240850709|ref|YP_002972109.1| response regulator [Bartonella grahamii as4aup] gi|161018141|emb|CAK01699.1| response regulator [Bartonella tribocorum CIP 105476] gi|240267832|gb|ACS51420.1| response regulator [Bartonella grahamii as4aup] Length = 120 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 90/116 (77%), Positives = 108/116 (93%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL +AGYEV +NG SAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLVKALERAGYEVADFDNGISAYERLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN +S+AP +AKVLSKPFHLR+LVNEV ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNSDAPPDAKVLSKPFHLRELVNEVEKIL 117 >gi|39933984|ref|NP_946260.1| CheY-like response regulator receiver [Rhodopseudomonas palustris CGA009] gi|192289403|ref|YP_001990008.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] gi|316932445|ref|YP_004107427.1| response regulator receiver protein [Rhodopseudomonas palustris DX-1] gi|39647831|emb|CAE26351.1| response regulator receiver (CheY-like protein) [Rhodopseudomonas palustris CGA009] gi|192283152|gb|ACE99532.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] gi|315600159|gb|ADU42694.1| response regulator receiver protein [Rhodopseudomonas palustris DX-1] Length = 119 Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 106/117 (90%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL+KAL AG++V S +NG SAY ++REEPF +LLTDIVMPEMDGI Sbjct: 2 HKILLAEDDNDMRRFLVKALENAGFQVSSFDNGMSAYQRLREEPFEMLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRA+ELDPD+K+MFITGFAAVALN DS+APKNAKVL+KP HLR+LV+EVN++L Sbjct: 62 ELARRASELDPDIKIMFITGFAAVALNSDSDAPKNAKVLAKPVHLRELVSEVNKMLA 118 >gi|85715252|ref|ZP_01046235.1| response regulator receiver [Nitrobacter sp. Nb-311A] gi|92116720|ref|YP_576449.1| response regulator receiver domain-containing protein [Nitrobacter hamburgensis X14] gi|85697898|gb|EAQ35772.1| response regulator receiver [Nitrobacter sp. Nb-311A] gi|91799614|gb|ABE61989.1| response regulator receiver domain protein (CheY-like) [Nitrobacter hamburgensis X14] Length = 119 Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 90/117 (76%), Positives = 105/117 (89%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL+KAL AG++V S +NG SAY ++REEPF +LLTDIVMPEMDGI Sbjct: 2 HKILLAEDDNDMRRFLVKALENAGFKVSSYDNGLSAYQRLREEPFEMLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRA+ELDPD+K+MFITGFAAVALN DS APKNAKVLSKP HLR+LV+EVN++L Sbjct: 62 ELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLA 118 >gi|75677127|ref|YP_319548.1| response regulator receiver [Nitrobacter winogradskyi Nb-255] gi|74421997|gb|ABA06196.1| response regulator receiver [Nitrobacter winogradskyi Nb-255] Length = 135 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/117 (76%), Positives = 105/117 (89%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL+KAL AG++V S +NG SAY ++REEPF +LLTDIVMPEMDGI Sbjct: 18 HKILLAEDDNDMRRFLVKALENAGFKVSSYDNGLSAYQRLREEPFEMLLTDIVMPEMDGI 77 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRA+ELDPD+K+MFITGFAAVALN DS APKNAKVLSKP HLR+LV+EVN++L Sbjct: 78 ELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLA 134 >gi|115522734|ref|YP_779645.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] gi|115516681|gb|ABJ04665.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] Length = 119 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 105/117 (89%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL+KAL AG++V S +NG +AY ++REEPF +LLTDIVMPEMDGI Sbjct: 2 HKILLAEDDNDMRRFLVKALENAGFQVSSHDNGLAAYQRLREEPFEMLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRA+ELDPD+K+MFITGFAAVALN DS APKNAKVLSKP HLR+LV+EVN++L Sbjct: 62 ELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLA 118 >gi|90422301|ref|YP_530671.1| response regulator receiver domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90104315|gb|ABD86352.1| response regulator receiver domain protein (CheY-like) [Rhodopseudomonas palustris BisB18] Length = 119 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 105/117 (89%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL+KAL AG++V S +NG SAY ++REEPF +LLTDIVMPEMDGI Sbjct: 2 HKILLAEDDNDMRRFLVKALENAGFQVSSYDNGLSAYQRLREEPFEMLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRA+ELDPD+K+MFITGFAAVALN DS APKNAKVL+KP HLR+LV+EVN++L Sbjct: 62 ELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKMLA 118 >gi|49475508|ref|YP_033549.1| response regulator [Bartonella henselae str. Houston-1] gi|49238314|emb|CAF27530.1| Response regulator [Bartonella henselae str. Houston-1] Length = 120 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 91/116 (78%), Positives = 107/116 (92%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL KAL +AGYEV +NGASAY++++EE FSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLAKALERAGYEVADFDNGASAYERLQEEAFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN +S+AP +AKVLSKPFHLRDLVNEV ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNSDAPPDAKVLSKPFHLRDLVNEVEKIL 117 >gi|27382839|ref|NP_774368.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27356012|dbj|BAC52993.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 119 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/116 (76%), Positives = 106/116 (91%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL+KAL AG++V S +NG +AY ++REEPF +LLTDIVMPEMDGIE Sbjct: 3 KILLAEDDNDMRRFLVKALENAGFQVSSHDNGMAAYQRLREEPFEMLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRA+ELDPD+K+MFITGFAAVALN DS+APKNAKVLSKP HLR+LV+EVN++L Sbjct: 63 LARRASELDPDIKIMFITGFAAVALNSDSDAPKNAKVLSKPVHLRELVSEVNKMLA 118 >gi|49474143|ref|YP_032185.1| response regulator [Bartonella quintana str. Toulouse] gi|49239647|emb|CAF26017.1| Response regulator [Bartonella quintana str. Toulouse] Length = 120 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 90/116 (77%), Positives = 107/116 (92%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL KAL +AGYEV +NG SAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLAKALERAGYEVADFDNGVSAYERLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN +S+AP +AKVLSKPFHLR+LVNEV ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNSDAPPDAKVLSKPFHLRELVNEVEKIL 117 >gi|146343025|ref|YP_001208073.1| putative response regulator receiver [Bradyrhizobium sp. ORS278] gi|148252945|ref|YP_001237530.1| putative response regulator receiver [Bradyrhizobium sp. BTAi1] gi|146195831|emb|CAL79858.1| Putative response regulator receiver (CheY-like protein) [Bradyrhizobium sp. ORS278] gi|146405118|gb|ABQ33624.1| Putative response regulator receiver (CheY-like protein) [Bradyrhizobium sp. BTAi1] Length = 119 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 104/117 (88%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAEDD+DMRRFL+KAL AG++V +NG SAY ++REEPF +LLTDIVMPEMDGI Sbjct: 2 HKILLAEDDNDMRRFLVKALENAGFQVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRA+ELDPD+K+MFITGFAAVALN DS APKNAKVLSKP HLR+LV+EVN++L Sbjct: 62 ELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLA 118 >gi|254473068|ref|ZP_05086466.1| chemotaxis response regulator [Pseudovibrio sp. JE062] gi|211957789|gb|EEA92991.1| chemotaxis response regulator [Pseudovibrio sp. JE062] Length = 118 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 90/116 (77%), Positives = 106/116 (91%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMR+FL KAL KAG+ VVS +NG SAY+++ EEPF+LLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDNDMRQFLSKALEKAGHTVVSFDNGKSAYERICEEPFALLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LAR+AT+LDPDLKVMFITGFAAVALNPDS AP++AKVLSKPFHL+DLV EV ++L Sbjct: 63 LARKATQLDPDLKVMFITGFAAVALNPDSKAPQDAKVLSKPFHLKDLVREVEKMLV 118 >gi|319899013|ref|YP_004159106.1| response regulator [Bartonella clarridgeiae 73] gi|319402977|emb|CBI76530.1| response regulator [Bartonella clarridgeiae 73] Length = 120 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 88/116 (75%), Positives = 107/116 (92%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL +AGYEV +NG SAY+ ++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLVKALERAGYEVTDFDNGVSAYECLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALNP+ +AP +AKVLSKPFHLR+LV+E+ ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNPNHDAPPDAKVLSKPFHLRELVSEIEKIL 117 >gi|319405780|emb|CBI79406.1| response regulator [Bartonella sp. AR 15-3] Length = 120 Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 88/116 (75%), Positives = 105/116 (90%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL KAL +AGYEV +NG SAY+ ++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLAKALERAGYEVTDFDNGVSAYECLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN + +AP +AKVLSKPFHLR+LVNE+ ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNHDAPPDAKVLSKPFHLRELVNEIEKIL 117 >gi|326410230|gb|ADZ67294.1| Response regulator receiver [Brucella melitensis M28] gi|326553523|gb|ADZ88162.1| Response regulator receiver [Brucella melitensis M5-90] Length = 108 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 85/105 (80%), Positives = 99/105 (94%) Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73 MRRFL+KAL KAGY V +NGASAY++++EEPFSLLLTDIVMPEMDGIELARRATE+DP Sbjct: 1 MRRFLVKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGIELARRATEIDP 60 Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DLK+MFITGFAAVALNPDS+AP++AKVLSKPFHLRDLVNE+ ++L Sbjct: 61 DLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 105 >gi|319408428|emb|CBI82083.1| response regulator [Bartonella schoenbuchensis R1] Length = 120 Score = 183 bits (464), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 87/116 (75%), Positives = 107/116 (92%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL +AGYEV+ +NGASAY +++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLVKALERAGYEVIDFDNGASAYKRLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN +++ +AKVLSKPFHLR+LV+EV ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNNDTIPDAKVLSKPFHLRELVSEVEKIL 117 >gi|319404337|emb|CBI77932.1| response regulator [Bartonella rochalimae ATCC BAA-1498] gi|319407342|emb|CBI80985.1| response regulator [Bartonella sp. 1-1C] Length = 120 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 87/116 (75%), Positives = 105/116 (90%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL KAL +AGYEV +NG SAY+ ++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLAKALERAGYEVTDFDNGVSAYECLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN + +AP +AKVLSKPFHLR+LV+E+ ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNHDAPPDAKVLSKPFHLRELVSEIEKIL 117 >gi|121602179|ref|YP_988918.1| response regulator [Bartonella bacilliformis KC583] gi|120614356|gb|ABM44957.1| response regulator [Bartonella bacilliformis KC583] Length = 120 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/116 (75%), Positives = 107/116 (92%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL +AGYEVV +NGASAY+ ++E+PFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLVKALERAGYEVVDFDNGASAYECLQEKPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN +++ +AKVLSKPFHLR+LVNE+ ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNNDTLPDAKVLSKPFHLRELVNEIGKIL 117 >gi|300024153|ref|YP_003756764.1| response regulator receiver protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525974|gb|ADJ24443.1| response regulator receiver protein [Hyphomicrobium denitrificans ATCC 51888] Length = 128 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 82/117 (70%), Positives = 101/117 (86%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDDD MR FL+KAL KA Y+VV+ NG AY++++ EPF+LLLTDIVMP+MDGI Sbjct: 11 RRILLAEDDDSMRGFLVKALEKANYDVVAFENGEEAYERLKREPFTLLLTDIVMPKMDGI 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARRA+E+DPDLK+MFITGFAAV LN ++ PK A+VLSKPFHL+DLV EV+RLL Sbjct: 71 ELARRASEIDPDLKIMFITGFAAVVLNSENQPPKEARVLSKPFHLKDLVREVDRLLA 127 >gi|114571051|ref|YP_757731.1| response regulator receiver protein [Maricaulis maris MCS10] gi|114341513|gb|ABI66793.1| response regulator receiver protein [Maricaulis maris MCS10] Length = 121 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 82/118 (69%), Positives = 95/118 (80%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 KILLAEDDD MR FL KAL +AG+EV+ C +G D + E+P F LLLTDIVMP +DG Sbjct: 3 KILLAEDDDSMRDFLAKALKRAGHEVLVCADGEEGLDAIGEQPAQFDLLLTDIVMPGVDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IELARRA E+DP LK+MFITGFAAVALNP S AP NAKVLSKPFHLR+LV+EV R++ Sbjct: 63 IELARRAAEIDPGLKIMFITGFAAVALNPGSGAPTNAKVLSKPFHLRELVDEVARVMA 120 >gi|154252445|ref|YP_001413269.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] gi|154156395|gb|ABS63612.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] Length = 120 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 81/116 (69%), Positives = 97/116 (83%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+ MRRFL KAL AG+EVVS G A+ +++++ F +LLTDIVMPEMDGIE Sbjct: 3 RILLAEDDESMRRFLSKALENAGHEVVSFGKGDEAHGRLKQDIFDILLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LAR A ELDP LK+MFITGFAAVALNP+ AP++AKVLSKPFHLRDLV EV+RL+ Sbjct: 63 LARLAAELDPTLKIMFITGFAAVALNPEVAAPRDAKVLSKPFHLRDLVAEVDRLMA 118 >gi|312112970|ref|YP_004010566.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC 17100] gi|311218099|gb|ADP69467.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC 17100] Length = 119 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 78/115 (67%), Positives = 95/115 (82%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDDD MRRFL KAL +AGYEVVS +NGA A ++E+ +LLLTDIVMPEMDGIEL Sbjct: 4 ILLAEDDDSMRRFLSKALERAGYEVVSYDNGADALKGLKEKRVTLLLTDIVMPEMDGIEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A+R ELDP++K+MFITGFAAVAL + AP+ A++LSKP HL+DLV EV+R+L Sbjct: 64 AKRGAELDPEMKIMFITGFAAVALQHYNEAPEKARILSKPIHLKDLVREVDRMLA 118 >gi|304319835|ref|YP_003853478.1| chemotaxis response regulator [Parvularcula bermudensis HTCC2503] gi|303298738|gb|ADM08337.1| chemotaxis response regulator [Parvularcula bermudensis HTCC2503] Length = 120 Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/115 (70%), Positives = 93/115 (80%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDDD MR FL KAL KAG+ VV G A ++++ F LLLTDIVMP MDGIEL Sbjct: 4 ILLAEDDDSMRGFLKKALEKAGHIVVDAAQGDDALNELQVREFDLLLTDIVMPIMDGIEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ARRAT++DPD+K+MFITGFAAVALNP + AP AKVLSKPFHLRDLVNEV+R+L Sbjct: 64 ARRATDIDPDMKIMFITGFAAVALNPANKAPAEAKVLSKPFHLRDLVNEVDRMLA 118 >gi|23007617|ref|ZP_00049408.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 91 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 76/90 (84%), Positives = 84/90 (93%) Query: 30 VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALN 89 +S +NG SAY+++REEPF LLLTDIVMPEMDGIELARRATELDPD+KVMFITGFAAVALN Sbjct: 1 MSFDNGLSAYNRLREEPFELLLTDIVMPEMDGIELARRATELDPDIKVMFITGFAAVALN 60 Query: 90 PDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 PDS APK+AKVLSKPFHLRDLVNEV +LL Sbjct: 61 PDSKAPKDAKVLSKPFHLRDLVNEVEKLLA 90 >gi|83859890|ref|ZP_00953410.1| chemotaxis response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852249|gb|EAP90103.1| chemotaxis response regulator [Oceanicaulis alexandrii HTCC2633] Length = 122 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 74/118 (62%), Positives = 90/118 (76%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +ILLAEDDD MR FL KAL +AG++V + +G D + E P + LLLTDIVMP +DG Sbjct: 3 RILLAEDDDSMRDFLAKALNRAGHDVDAVADGEEGLDALGEAPGAYELLLTDIVMPGVDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IELARRA ++D LK+MFITGFAAVALN S AP AKVLSKPFHLRDLV+EV +++ Sbjct: 63 IELARRAAQIDAGLKIMFITGFAAVALNAGSQAPNQAKVLSKPFHLRDLVDEVAKVVA 120 >gi|254295328|ref|YP_003061351.1| response regulator receiver [Hirschia baltica ATCC 49814] gi|254043859|gb|ACT60654.1| response regulator receiver protein [Hirschia baltica ATCC 49814] Length = 157 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/116 (61%), Positives = 91/116 (78%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI+LAEDD+ +R FL+ AL KAG+ V ++G SA + ++EE F LLLTDIVMP +DGIE Sbjct: 41 KIILAEDDNSLRGFLVNALKKAGHTVRDYDDGESALEALQEEVFDLLLTDIVMPGLDGIE 100 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LAR+ ELDP +K++FITGFAAVAL+ S P AKVLSKPFHLR+LV+EV R++ Sbjct: 101 LARKGAELDPAMKIVFITGFAAVALSNGSPTPAGAKVLSKPFHLRELVDEVERVMA 156 >gi|329848150|ref|ZP_08263178.1| cell cycle histidine kinase CckA [Asticcacaulis biprosthecum C19] gi|328843213|gb|EGF92782.1| cell cycle histidine kinase CckA [Asticcacaulis biprosthecum C19] Length = 118 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/117 (60%), Positives = 90/117 (76%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILLAED+D +R FL +AL +AGYEVV+C +G SA + + P+ LLLTDIVMP DGI Sbjct: 2 KKILLAEDEDSVRSFLSRALQRAGYEVVACADGDSAIEALDHGPYDLLLTDIVMPGADGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+A++A + PDLK+MFITGFAAVALN +P NAKVL KP HLR++V EV RL+ Sbjct: 62 EVAKKAALVQPDLKIMFITGFAAVALNAQKASP-NAKVLEKPVHLREIVTEVERLIA 117 >gi|167644829|ref|YP_001682492.1| response regulator receiver protein [Caulobacter sp. K31] gi|167347259|gb|ABZ69994.1| response regulator receiver protein [Caulobacter sp. K31] Length = 118 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 69/116 (59%), Positives = 88/116 (75%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDD +R FL +AL +AG+EV +C +G A + + P+ LLLTDIVMP MDGIE Sbjct: 3 RILLAEDDDSLRGFLARALERAGFEVTACADGEEAVQHL-DTPWDLLLTDIVMPGMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +AR+A DP L++MFITGFAAVAL+ AP AKVLSKP HLRDLV+EV +++ Sbjct: 62 VARQAAARDPSLRIMFITGFAAVALSAQDRAPAGAKVLSKPVHLRDLVSEVEKMMA 117 >gi|114797706|ref|YP_758961.1| response regulator [Hyphomonas neptunium ATCC 15444] gi|114737880|gb|ABI76005.1| response regulator [Hyphomonas neptunium ATCC 15444] Length = 119 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/115 (60%), Positives = 87/115 (75%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDDD MR FL AL +AG+++ +G +A + E F LLLTDIVMP +DGIE Sbjct: 3 KILLAEDDDSMRTFLASALRRAGHDIQDYADGETALQALEREVFDLLLTDIVMPGLDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LARR ELDP +K++FITGFAAVAL+ S P AKVLSKPFHLR++V EV++++ Sbjct: 63 LARRGAELDPAMKIVFITGFAAVALSSGSPTPAGAKVLSKPFHLREIVEEVDKVM 117 >gi|16124997|ref|NP_419561.1| response regulator [Caulobacter crescentus CB15] gi|221233718|ref|YP_002516154.1| two-component receiver protein cpdR [Caulobacter crescentus NA1000] gi|13421977|gb|AAK22729.1| CpdR [Caulobacter crescentus CB15] gi|220962890|gb|ACL94246.1| two-component receiver protein cpdR [Caulobacter crescentus NA1000] Length = 118 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/116 (59%), Positives = 87/116 (75%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDD +R FL +AL +AG+EV +C +G A + + P+ LLLTDIVMP MDGIE Sbjct: 3 RILLAEDDDSLRGFLARALERAGFEVQACADGEEAVQHL-DHPWDLLLTDIVMPGMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +AR+A DP L++MFITGFAAVAL+ AP AKVLSKP HLRDLV EV +++ Sbjct: 62 VARQAAARDPSLRIMFITGFAAVALSAQDRAPAGAKVLSKPVHLRDLVAEVEKMMA 117 >gi|85374365|ref|YP_458427.1| response regulator [Erythrobacter litoralis HTCC2594] gi|84787448|gb|ABC63630.1| Response regulator [Erythrobacter litoralis HTCC2594] Length = 130 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 70/117 (59%), Positives = 90/117 (76%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++ILLAED++ MR +L KAL AGY+VV+ + G +A K+ + F LLL+DIVMPEMDG Sbjct: 7 SRRILLAEDEEAMRTYLAKALENAGYDVVAVDRGTAAVPKLESQHFDLLLSDIVMPEMDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IELA+R E+ P KVMFITGFAAV+L + P+ AKVLSKPFHLRDLV EV+R+ Sbjct: 67 IELAQRCNEVSPHTKVMFITGFAAVSLKASKDQPR-AKVLSKPFHLRDLVMEVDRVF 122 >gi|85708961|ref|ZP_01040027.1| Response regulator [Erythrobacter sp. NAP1] gi|85690495|gb|EAQ30498.1| Response regulator [Erythrobacter sp. NAP1] Length = 129 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/115 (62%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+D MR +L +AL KAGYEV S + G A + E F LLL+DIVMPEMDGIE Sbjct: 8 RILLAEDEDAMRTYLERALTKAGYEVTSVDRGTEALPLLEEGEFDLLLSDIVMPEMDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+R E+ P KVMFITGFAAV+L P +AKVLSKPFHLRDLV EV R+ Sbjct: 68 LAQRCAEVSPRTKVMFITGFAAVSLRASREQP-HAKVLSKPFHLRDLVLEVERVF 121 >gi|332186517|ref|ZP_08388261.1| response regulator [Sphingomonas sp. S17] gi|332013500|gb|EGI55561.1| response regulator [Sphingomonas sp. S17] Length = 125 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/115 (62%), Positives = 85/115 (73%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILLAEDD+ MR +L +AL ++GY V + + G +A + E F LLLTDIVMPEMDGIE Sbjct: 3 HILLAEDDEVMREYLTRALTRSGYRVTAVDRGTAALPLLDTEHFDLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+RA L PDL+VMFITGFAAV L P NA+VLSKPFHLRDLV EV+RL Sbjct: 63 LAQRAAALVPDLRVMFITGFAAVTLKAGEAMP-NARVLSKPFHLRDLVMEVDRLF 116 >gi|294012922|ref|YP_003546382.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676252|dbj|BAI97770.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 125 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/119 (57%), Positives = 87/119 (73%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+ MR +L +AL ++GYEVVS GA A + + F LLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDESMRAYLARALERSGYEVVSVATGAQAVPHIDSDRFDLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 LA+ A + PD+++MFITGFAAV L P+ AKVLSKPFHLR+LV EV R+ ++ Sbjct: 63 LAQHAAAVAPDMRIMFITGFAAVTLKAGKAVPQ-AKVLSKPFHLRELVLEVERMFGTES 120 >gi|94495468|ref|ZP_01302048.1| response regulator receiver domain protein (CheY-like) [Sphingomonas sp. SKA58] gi|94424856|gb|EAT09877.1| response regulator receiver domain protein (CheY-like) [Sphingomonas sp. SKA58] Length = 125 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/115 (59%), Positives = 85/115 (73%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+ MR +L +AL ++GYEVV+ G A + + F LLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDESMRVYLARALERSGYEVVAVATGTQAVPYIDSDRFDLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ A ++ PD+++MFITGFAAV L P+ AKVLSKPFHLRDLV EV R+ Sbjct: 63 LAQHAAQVAPDMRIMFITGFAAVTLKAGKAVPQ-AKVLSKPFHLRDLVLEVERMF 116 >gi|315498883|ref|YP_004087687.1| response regulator receiver protein [Asticcacaulis excentricus CB 48] gi|315416895|gb|ADU13536.1| response regulator receiver protein [Asticcacaulis excentricus CB 48] Length = 118 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/115 (59%), Positives = 89/115 (77%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ +R FL +AL +AGY+VVSC +G SA + + + P+ LLLTDIVMP DGIE Sbjct: 3 KILLAEDENSVRSFLTRALQRAGYDVVSCPDGDSAIEALDQGPYDLLLTDIVMPGADGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A+ A++ P LK+MFITGFAAVALN +P+ AKVL KP HLR++V EV RL+ Sbjct: 63 VAKVASQRQPGLKIMFITGFAAVALNAQKASPE-AKVLEKPVHLREIVTEVERLI 116 >gi|197106590|ref|YP_002131967.1| response regulator [Phenylobacterium zucineum HLK1] gi|196480010|gb|ACG79538.1| response regulator [Phenylobacterium zucineum HLK1] Length = 118 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/116 (57%), Positives = 87/116 (75%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDD +R FL +AL +AGYEV +C +G A + +EP+ LLLTDIVMP +DGIE Sbjct: 3 RILLAEDDDSLRGFLARALERAGYEVTACADGDEAATYL-DEPWDLLLTDIVMPGLDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +AR+A P L++MFITGFAAVAL AP +KVLSKP HLR++V+EV R++ Sbjct: 62 VARQAAAKHPGLRIMFITGFAAVALAAGERAPAGSKVLSKPIHLREIVSEVERMIA 117 >gi|148553062|ref|YP_001260644.1| response regulator receiver protein [Sphingomonas wittichii RW1] gi|148498252|gb|ABQ66506.1| response regulator receiver protein [Sphingomonas wittichii RW1] Length = 124 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/119 (57%), Positives = 88/119 (73%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDD MR +L +AL ++GY V S + G +A + F LLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDDSMREYLARALERSGYAVTSVDRGTAALPLIEANGFDLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 LA+RA + P+++VMFITGFAAV L + P +AK+LSKPFHLRDLV EV+R+ + + Sbjct: 63 LAQRANVIAPNMRVMFITGFAAVTLKSGAT-PPDAKILSKPFHLRDLVLEVDRMFQVGS 120 >gi|295690970|ref|YP_003594663.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] gi|295432873|gb|ADG12045.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] Length = 118 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 67/116 (57%), Positives = 86/116 (74%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDD +R FL +AL +AG+EV +C +G A + + + LLLTDIVMP MDGIE Sbjct: 3 RILLAEDDDSLRGFLARALERAGFEVQACADGEEAVQHL-DNSWDLLLTDIVMPGMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +AR+A DP L++MFITGFAAVAL+ AP +KVLSKP HLRDLV EV +++ Sbjct: 62 VARQAAARDPSLRIMFITGFAAVALSAQDRAPAGSKVLSKPVHLRDLVAEVEKMMA 117 >gi|296282679|ref|ZP_06860677.1| response regulator [Citromicrobium bathyomarinum JL354] Length = 130 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 66/117 (56%), Positives = 89/117 (76%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ILLAED++ MR +L +AL K+GY V S + G +A + + + LLL+DIVMPEMDG Sbjct: 7 QRRILLAEDEEAMRTYLTRALEKSGYAVDSVDCGTAALPLLESDSYDLLLSDIVMPEMDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IELA+R E+ P+ KVMFITGFAAV+L ++ P+ A+VLSKPFHLRDLV EV+R+ Sbjct: 67 IELAQRCAEISPETKVMFITGFAAVSLKASADQPQ-ARVLSKPFHLRDLVLEVDRIF 122 >gi|87199308|ref|YP_496565.1| response regulator receiver domain-containing protein [Novosphingobium aromaticivorans DSM 12444] gi|87134989|gb|ABD25731.1| response regulator receiver domain protein (CheY-like) [Novosphingobium aromaticivorans DSM 12444] Length = 127 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/115 (58%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED++ MR +L +AL AGY V + + G +A + E F LLL+DIVMPEMDGIE Sbjct: 3 RILLAEDEEAMRTYLTRALENAGYSVAAVDRGTAAIPLLEREQFDLLLSDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+R E+ P KVMFITGFAAV L + AP+ A+VLSKPFHL+DLV EV R+ Sbjct: 63 LAQRCAEISPATKVMFITGFAAVTLKANREAPQ-ARVLSKPFHLKDLVMEVERVF 116 >gi|149184415|ref|ZP_01862733.1| Response regulator [Erythrobacter sp. SD-21] gi|148831735|gb|EDL50168.1| Response regulator [Erythrobacter sp. SD-21] Length = 133 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 1/120 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++ILLAEDD+ MR +L +AL +AGY V + + G A + + + LLL+DIVMPEMDG Sbjct: 10 HKRILLAEDDEAMRTYLERALEQAGYGVDAVDRGTEAIPLLENDHYDLLLSDIVMPEMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IELA+R E+ P KVMFITGFAAV L P +AKVLSKPFHLRDLV EV R+L K Sbjct: 70 IELAQRCNEISPTTKVMFITGFAAVTLKASREQP-HAKVLSKPFHLRDLVMEVERVLEEK 128 >gi|326387199|ref|ZP_08208809.1| response regulator receiver domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208380|gb|EGD59187.1| response regulator receiver domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] Length = 129 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/115 (59%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+ MR +L +AL AG+ V + + G +A + E F LLL+DIVMPEMDGIE Sbjct: 3 RILLAEDDEAMRTYLSRALETAGFSVSAVDRGTTALPLLEREHFDLLLSDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+R ++ P KVMFITGFAAV L + AP+ A+VLSKPFHLRDLV EV RL Sbjct: 63 LAQRCADISPGTKVMFITGFAAVTLKANREAPQ-ARVLSKPFHLRDLVLEVERLF 116 >gi|103486821|ref|YP_616382.1| response regulator receiver protein [Sphingopyxis alaskensis RB2256] gi|98976898|gb|ABF53049.1| response regulator receiver protein [Sphingopyxis alaskensis RB2256] Length = 125 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDD MR +L +AL AGY V + + G +A + F LLL+DIVMPEMDGIE Sbjct: 3 RILLAEDDDVMREYLARALTSAGYHVTAVDRGTAAVPYIDSGTFDLLLSDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ + P +VMFITGFAAV+L + N P+ AK+LSKPFHL+DLV EV+ L Sbjct: 63 LAQHTAKAAPQTQVMFITGFAAVSLRAEENVPQ-AKLLSKPFHLKDLVREVDSLF 116 >gi|329890811|ref|ZP_08269154.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328846112|gb|EGF95676.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 118 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/116 (59%), Positives = 87/116 (75%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+ +R FL +AL +A +EVV+C NG A D + + P+ LLLTDIVMP DGIE Sbjct: 3 RILLAEDDNSLRGFLTRALERADHEVVACENGDDAIDALDQGPYDLLLTDIVMPGADGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +AR A P L++MFITGFAAVAL+ +P+ AKVLSKP HLRDLVNEV R++ Sbjct: 63 VARVAAARQPGLRIMFITGFAAVALSAAQASPQ-AKVLSKPVHLRDLVNEVERMIA 117 >gi|307293940|ref|ZP_07573784.1| response regulator receiver protein [Sphingobium chlorophenolicum L-1] gi|306880091|gb|EFN11308.1| response regulator receiver protein [Sphingobium chlorophenolicum L-1] Length = 113 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/109 (56%), Positives = 78/109 (71%), Gaps = 1/109 (0%) Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73 MR +L +AL ++GYEVV+ GA A + + F LLLTDIVMPEMDGIELA+ A + P Sbjct: 1 MRAYLARALERSGYEVVAVATGAQAVPHIDGDRFDLLLTDIVMPEMDGIELAQHAAAVAP 60 Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 D+++MFITGFAAV L P+ AKVLSKPFHLRDLV EV R+ ++ Sbjct: 61 DMRIMFITGFAAVTLKAGKAVPQ-AKVLSKPFHLRDLVLEVERMFGTES 108 >gi|254420289|ref|ZP_05034013.1| hypothetical protein BBAL3_2599 [Brevundimonas sp. BAL3] gi|196186466|gb|EDX81442.1| hypothetical protein BBAL3_2599 [Brevundimonas sp. BAL3] Length = 118 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/116 (58%), Positives = 82/116 (70%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD +R FL +AL +AG+ VV C NG A D + P+ LLLTDIVMP DGIE Sbjct: 3 RILLAEDDSSLRGFLTRALERAGHHVVDCENGDDAIDALEHGPYDLLLTDIVMPGADGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +AR A P L++MFITGFAAVAL P+ AKVLSKP HLRDLV+EV R++ Sbjct: 63 VARVAAARQPGLRIMFITGFAAVALTAAQATPQ-AKVLSKPVHLRDLVSEVERMVA 117 >gi|302381864|ref|YP_003817687.1| response regulator receiver protein [Brevundimonas subvibrioides ATCC 15264] gi|302192492|gb|ADL00064.1| response regulator receiver protein [Brevundimonas subvibrioides ATCC 15264] Length = 119 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 67/116 (57%), Positives = 85/116 (73%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD +R FL +AL +AG++V+ C NG A D + P+ LLLTDIVMP DGIE Sbjct: 3 RILLAEDDASLRGFLTRALERAGHQVIDCENGDDAIDALEHGPYDLLLTDIVMPGADGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +AR A P L++MFITGFAAVAL+ +P+ AKVLSKP HLRDLV EV+++ T Sbjct: 63 VARVAAARQPGLRIMFITGFAAVALSAAQASPQ-AKVLSKPVHLRDLVAEVDKMCT 117 >gi|15891337|ref|NP_357009.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15159722|gb|AAK89794.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 119 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D +R F+ +AL G+E +G +K+++ F LLL+DI MP MDGIE Sbjct: 3 KILITEDEDALRAFVARALRLDGHETHEAADGEQGLEKLQQTSFDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA RA E P ++++ +TG+A D A K V+SKPF L D+ V R L Sbjct: 63 LAHRAAESFPAMRILLMTGYAEQRERADDLATKIVDVVSKPFALPDIRKAVARALA 118 >gi|332716391|ref|YP_004443857.1| two component response regulator [Agrobacterium sp. H13-3] gi|325063076|gb|ADY66766.1| two component response regulator [Agrobacterium sp. H13-3] Length = 119 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 69/116 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D +R F+ +AL G+E +G +K++E F LLL+DI MP MDGIE Sbjct: 3 KILITEDEDALRAFVARALRLDGHETHEAADGEQGLEKLQETNFDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA RA E P ++++ +TG+A D A K V+SKPF L D+ V R L Sbjct: 63 LAHRAAERFPAMRILLMTGYAEQRERADDLAEKIVDVVSKPFALPDIRKAVARALA 118 >gi|209551145|ref|YP_002283062.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536901|gb|ACI56836.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 119 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 70/116 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R F+ +AL G+E +GA +K+R+ + LLL+DI MP MDGIE Sbjct: 3 RILITEDEDSLRSFVARALRLDGHETDEAADGAEGLEKLRDGSYDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA +A + P LK++ +TG+A D A K V++KPF L D+ V R L Sbjct: 63 LAHQAKDAFPGLKILLMTGYAEQRERADDLAEKIIDVVAKPFALPDIRKAVARALV 118 >gi|218682902|ref|ZP_03530503.1| response regulator receiver protein [Rhizobium etli CIAT 894] Length = 119 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 70/116 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R F+ +AL G+E +GA +K+R+ + LLL+DI MP MDGIE Sbjct: 3 RILITEDEDSLRSFVARALRLDGHETDEAADGAEGLEKLRDGTYDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA +A + P LK++ +TG+A D A K V++KPF L D+ V R L Sbjct: 63 LAHQAKDAFPGLKILLMTGYAEQRERADDLAEKIIDVVAKPFALPDIRKAVARALV 118 >gi|227823228|ref|YP_002827200.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227342229|gb|ACP26447.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] Length = 119 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 69/116 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R F+ +AL G+E V +GA +++++ F LLL+DI MP MDGIE Sbjct: 3 RILITEDEDALRSFVARALQLDGHETVEAGDGADGLARLKDQRFDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L +A+ P LK++ +TG+A D + K V+SKPF L D+ V L Sbjct: 63 LVHQASAAFPQLKILLMTGYAEQRERADDISGKVVDVISKPFSLPDIRKAVAHALA 118 >gi|163759922|ref|ZP_02167006.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162282880|gb|EDQ33167.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 122 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 72/118 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+D +RRF+ +AL G+E+ +GA A ++++ + LLL+DI MP MDGIE Sbjct: 3 KILIAEDEDSLRRFVARALEMDGHEIAHAGDGADALEQLQSNRYDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 LA ++ +L PD+ ++ +TG+A + V++KPF L + V LT + Sbjct: 63 LATQSAKLAPDMPILLMTGYAEQRERAEPLMRIVIDVVAKPFSLPQIRQAVAEALTAQ 120 >gi|304394196|ref|ZP_07376119.1| response regulator receiver [Ahrensia sp. R2A130] gi|303293636|gb|EFL88013.1| response regulator receiver [Ahrensia sp. R2A130] Length = 138 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDG 61 +ILL EDD +R F+ +AL G+ V ++G YD++ E F LLLTD+ MP MDG Sbjct: 3 RILLTEDDSAVRAFVARALAADGHTVTEADDGEDGYDRLIEHEGDFDLLLTDVKMPFMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IELA +A + PDLK++ +TG+A D+ V+SKPF L+ + VN L Sbjct: 63 IELAEQAAKHYPDLKILMMTGYADQRERADNLDAIIIDVVSKPFTLKHIRQAVNSAL 119 >gi|116254062|ref|YP_769900.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|190893636|ref|YP_001980178.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|218458913|ref|ZP_03499004.1| probable two-component response regulator protein [Rhizobium etli Kim 5] gi|115258710|emb|CAK09815.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|190698915|gb|ACE93000.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] gi|327193557|gb|EGE60447.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium etli CNPAF512] Length = 119 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 70/116 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R F+ +AL G+E +GA +K+++ + LLL+DI MP MDGIE Sbjct: 3 RILITEDEDSLRSFVARALRLDGHETDEAADGAEGLEKLKDGVYDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA +A + P LK++ +TG+A D A K V++KPF L D+ V R L Sbjct: 63 LAHQAKDAFPGLKILLMTGYAEQRERADDLAEKIIDVVAKPFALPDIRKAVARALV 118 >gi|222087351|ref|YP_002545888.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724799|gb|ACM27955.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 119 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 68/116 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R F+ +AL G+E +GA +K+++ + LLL+DI MP MDGIE Sbjct: 3 RILITEDEDSLRTFVARALRLDGHETEEAADGAEGLEKLKQGVYDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA +A P +K++ +TG+A D K V+SKPF L D+ V R L Sbjct: 63 LAHQAASTCPGMKILLMTGYAEQRERADDLMEKIVDVVSKPFALPDIRKAVARALA 118 >gi|159897796|ref|YP_001544043.1| response regulator receiver sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890835|gb|ABX03915.1| response regulator receiver sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 542 Score = 85.9 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 46/114 (40%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD + R+ KAL GY+VV +G A D +R + F LLLTDI MPEM G+EL Sbjct: 18 ILVVDDDTSICRYCSKALRNVGYQVVDTTSGLVALDHLRHQAFDLLLTDIKMPEMSGLEL 77 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR+A L+P L V+ +TG + ++ LSKPF + ++ V ++L Sbjct: 78 ARQARALNPGLAVIIMTGQTTLETLREAVQQGVTSYLSKPFEIEEMRLTVAQVL 131 >gi|86359382|ref|YP_471274.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|218671847|ref|ZP_03521516.1| two-component response regulator protein [Rhizobium etli GR56] gi|86283484|gb|ABC92547.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 119 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 70/116 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R F+ +AL G+E +GA +K+++ + LLL+DI MP MDGIE Sbjct: 3 RILITEDEDSLRSFVARALRLDGHETDEAADGAEGLEKLKDGVYDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA +A + P LK++ +TG+A D A K V++KPF L D+ V R L Sbjct: 63 LAHQAKDAFPALKILLMTGYAEQRERADDLAEKIIDVVAKPFALPDIRKAVARALV 118 >gi|319787874|ref|YP_004147349.1| PAS/PAC sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317466386|gb|ADV28118.1| PAS/PAC sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 638 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 47/116 (40%), Positives = 69/116 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILL +D++ +R ++ L AGYEVV+C + A V F LLLTD+ +P + G Sbjct: 522 ESILLVDDNELVRGMALEVLVDAGYEVVACADAGEALQAVATRGFDLLLTDVGLPGLSGR 581 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA R E DPD+ V+FITG+A A N + + +L KPF+L +L+ V + L Sbjct: 582 ELADRVRERDPDMAVLFITGYAENAQNRQAFLGEGMDMLLKPFNLNELLRAVRQKL 637 >gi|218660081|ref|ZP_03516011.1| probable two-component response regulator protein [Rhizobium etli IE4771] Length = 116 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 69/113 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R F+ +AL G+E +GA +K+++ + LLL+DI MP MDGIE Sbjct: 3 RILITEDEDSLRSFVARALRLDGHETDEAADGAEGLEKLKDGVYDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LA +A + P LK++ +TG+A D A K V++KPF L D+ V R Sbjct: 63 LAHQAKDAFPGLKILLMTGYAEQRERADDLAEKIIDVVAKPFALPDIRKAVAR 115 >gi|288958053|ref|YP_003448394.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910361|dbj|BAI71850.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 843 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 ILL ED+D +R F +AL GY+V+ NG +A ++ S LL+TD+VMP+MDG Sbjct: 725 ILLVEDEDAVRVFSARALRNKGYQVLEAKNGEAALQQIEANGASIDLLITDVVMPQMDGP 784 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR EL P+++V+FI+G+A L + + + A L KPF L+ L ++V ++ Sbjct: 785 TLARHVHELRPEMRVIFISGYAEDRLG-EIDGVEVAHFLPKPFSLKQLASKVKEVI 839 >gi|241206548|ref|YP_002977644.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860438|gb|ACS58105.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 119 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 70/116 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R F+ +AL G+E +GA +K+++ + LLL+DI MP MDGIE Sbjct: 3 RILITEDEDSLRSFVARALRLDGHETDEAADGAEGLEKLKDGVYDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA +A + P LK++ +TG+A D A K V++KPF L ++ V R L Sbjct: 63 LAHQAKDAFPSLKILLMTGYAEQRERADDLAEKIIDVVAKPFALPEIRKAVARALV 118 >gi|158423290|ref|YP_001524582.1| sensor protein [Azorhizobium caulinodans ORS 571] gi|158330179|dbj|BAF87664.1| sensor protein [Azorhizobium caulinodans ORS 571] Length = 852 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62 +LL ED+D +R F +AL GY VV+ + GA A V E F L+++D+VMPEMDG Sbjct: 735 VLLVEDEDAVRAFASRALSARGYNVVAASGGAEALAVVDAAEHRFDLVISDVVMPEMDGP 794 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R P+LKV+FI+G+A A + A + L KPF L+ LV V + Sbjct: 795 TLLRELRARHPELKVIFISGYAEEAFAKNLPASEKFAFLPKPFTLKQLVAAVKETI 850 >gi|37700515|gb|AAR00256.1| putative sensor [Azospirillum lipoferum] Length = 168 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 ILL ED+D +R F +AL GY+V+ NG +A ++ S LL+TD+VMP+MDG Sbjct: 50 ILLVEDEDAVRVFSARALRNKGYQVLEAKNGEAALQQIETNGASIDLLITDVVMPQMDGP 109 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR +L P+++V+FI+G+A L + + + A L KPF L+ L ++V ++ Sbjct: 110 TLARHVRKLRPEMRVIFISGYAEDRLG-EIDGVEVAHFLPKPFSLKQLASKVKEVI 164 >gi|57239064|ref|YP_180200.1| putative histidine kinase sensor protein [Ehrlichia ruminantium str. Welgevonden] gi|58579007|ref|YP_197219.1| putative histidine kinase sensor protein [Ehrlichia ruminantium str. Welgevonden] gi|57161143|emb|CAH58056.1| putative two component sensor kinase [Ehrlichia ruminantium str. Welgevonden] gi|58417633|emb|CAI26837.1| Putative histidine kinase sensor protein [Ehrlichia ruminantium str. Welgevonden] Length = 828 Score = 83.6 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILL ED+D +R F KAL K G+ V+ N G A D ++ + ++++D+VMP++ G Sbjct: 708 KNILLIEDEDPVRIFATKALVKKGFNVIDINCGDKAIDIIKNQNIDIVISDVVMPKISGP 767 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 E+ + ++ P++KV+FI+G+A N SN + LSKPF L+ L +V+ +L Sbjct: 768 EIIDQILKIQPNIKVIFISGYAEEVFNKHSNIDASKINFLSKPFTLKQLTEKVSEIL 824 >gi|58617066|ref|YP_196265.1| putative histidine kinase sensor protein [Ehrlichia ruminantium str. Gardel] gi|58416678|emb|CAI27791.1| Putative histidine kinase sensor protein [Ehrlichia ruminantium str. Gardel] Length = 828 Score = 83.6 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILL ED+D +R F KAL K G+ V+ N G A D ++ + ++++D+VMP++ G Sbjct: 708 KNILLIEDEDPVRIFATKALVKKGFNVIDINCGDKAIDIIKNQNIDIVISDVVMPKISGP 767 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 E+ + ++ P++KV+FI+G+A N SN + LSKPF L+ L +V+ +L Sbjct: 768 EIIDQILKIQPNIKVIFISGYAEEVFNKHSNIDASKINFLSKPFTLKQLTEKVSEIL 824 >gi|154252050|ref|YP_001412874.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] gi|154156000|gb|ABS63217.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] Length = 127 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVRE--EPFSLLLTDIVMPE 58 +IL+AED+ D+R F+++ALG AG+EV +G+ A + + RE P LLLTDI+MP Sbjct: 3 RILVAEDEPDVRTFVVRALGGAGHEVSGVGDGSDALEALTRAREANRPHDLLLTDILMPV 62 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG+ LA A+ P L++M +TG++ +L KPF L +LV V +L Sbjct: 63 MDGVSLALLASRDAPALRIMLMTGYSGQRERAHGLDAIIHDILLKPFTLDELVTRVAAVL 122 Query: 119 TIKN 122 K Sbjct: 123 EGKT 126 >gi|150397738|ref|YP_001328205.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150029253|gb|ABR61370.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 119 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 67/111 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D +R F+ +AL G+E V +GA +R++PF LLL+DI MP MDGIE Sbjct: 3 KILITEDEDALRSFVARALRLDGHETVEAGDGADGLACLRDQPFDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 LA +A P LK++ +TG+A D + K V+ KPF L D+ V Sbjct: 63 LAHQAAAAFPALKILLMTGYAEQRERADDLSAKVVDVIEKPFSLPDIRKAV 113 >gi|15966405|ref|NP_386758.1| putative 2-component receiver domain protein [Sinorhizobium meliloti 1021] gi|307300558|ref|ZP_07580338.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] gi|307318423|ref|ZP_07597858.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|15075676|emb|CAC47231.1| Putative 2-component receiver domain protein [Sinorhizobium meliloti 1021] gi|306896105|gb|EFN26856.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|306904724|gb|EFN35308.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] Length = 119 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 67/111 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D +R F+ +AL G+E V +GA +R++PF LLL+DI MP MDGIE Sbjct: 3 KILITEDEDGLRSFVARALRLDGHETVEAGDGADGLACLRDQPFDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 LA +A P LK++ +TG+A D + K V+ KPF L D+ V Sbjct: 63 LAHQAAAAFPALKILLMTGYAEQRERADDLSGKVVDVIEKPFSLPDIRKAV 113 >gi|115522263|ref|YP_779174.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115516210|gb|ABJ04194.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 832 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ +R +++ L + GY + + S +++R+ P LL+TD+ +P M+G Sbjct: 711 ETILVVEDEAVVRGVVVEFLNEHGYRTLEADCARSGLERLRQHPIDLLVTDVGLPGMNGR 770 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + A +A E PDLKV+F+TG+A A P ++++KPF L DLV + LL+ Sbjct: 771 QFADQARESRPDLKVLFMTGYAESA--AKGVLPAGMELITKPFELDDLVRRIRELLS 825 >gi|149919529|ref|ZP_01908009.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149819654|gb|EDM79081.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 691 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++LL EDDD +R I L + GY V + +G A ++ E F L+L+D++MP + G Sbjct: 572 HEQVLLVEDDDQLRTLTIMVLTRLGYVVAAAEDGERALERFASESFDLVLSDVIMPGISG 631 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 EL RR P L+ + ++G+A A++ P+ +VLSKPF +R+L + +L K Sbjct: 632 PELVRRLVAEQPKLEWLLMSGYAGDAIDLAEVDPR--RVLSKPFSVRELAARLREVLDAK 689 Query: 122 N 122 + Sbjct: 690 S 690 >gi|153007209|ref|YP_001381534.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp. Fw109-5] gi|152030782|gb|ABS28550.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. Fw109-5] Length = 641 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58 + + ++LAED+D +R L + L +GYEVV+ NGA A RE LLL D+VMP Sbjct: 515 LGEVVVLAEDEDALRVLLGRVLAGSGYEVVAGRNGAEALQAARERGGRVDLLLADLVMPR 574 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G ELA P +KV+F+TG AL D + +++ KPF L+ V RLL Sbjct: 575 MTGAELAHALQGEQPAMKVLFMTGHTEDALVEDRLRDGDVELIQKPFTSEILLGHVRRLL 634 >gi|73666945|ref|YP_302961.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ehrlichia canis str. Jake] gi|72394086|gb|AAZ68363.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ehrlichia canis str. Jake] Length = 824 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+D +R F KAL K G++V+ + G A D + + P ++++D+VMP++ G E+ Sbjct: 707 ILLIEDEDPVRIFATKALTKKGFKVIDISCGDQALDIINKYPIDIVISDVVMPKISGPEI 766 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHLRDLVNEV 114 + + PD++++FI+G+A N SN LSKPF L+ L +V Sbjct: 767 VEQILKAKPDIQIIFISGYAEEVFNKHSNIDATKINFLSKPFTLKQLTEKV 817 >gi|68171248|ref|ZP_00544651.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88657797|ref|YP_507553.1| sensor histidine kinase/response regulator [Ehrlichia chaffeensis str. Arkansas] gi|67999330|gb|EAM85976.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88599254|gb|ABD44723.1| sensor histidine kinase/response regulator [Ehrlichia chaffeensis str. Arkansas] Length = 828 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+D +R F KAL K G++V+ N G A D + + P ++++D+VMP++ G E+ Sbjct: 707 ILLIEDEDPVRIFTTKALTKKGFKVIDINCGDQALDIINKYPIDIVISDVVMPKISGPEI 766 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAP-KNAKVLSKPFHLRDLVNEV 114 + ++ P+++++FI+G+A N SN LSKPF L+ L +V Sbjct: 767 VEQILKVKPNIQIIFISGYAEEVFNKYSNIDVSKINFLSKPFTLKQLTEKV 817 >gi|254796739|ref|YP_003081575.1| Sensor histidine kinase/response regulator CckA [Neorickettsia risticii str. Illinois] gi|254589986|gb|ACT69348.1| Sensor histidine kinase/response regulator CckA [Neorickettsia risticii str. Illinois] Length = 745 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 72/113 (63%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDG 61 KILL ED+ +R FL+KAL + G+ VV + SA +K EE + LL+TD+VMP MDG Sbjct: 623 KILLVEDEKIVRNFLVKALTRQGFSVVEYESSKSALEKFEEEKDTAVLLITDVVMPGMDG 682 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ + + DLKV+F++G+ L+ DS ++ ++KPF + +L+++V Sbjct: 683 PEMVKEMRKQKADLKVLFMSGYTRDKLHLDSK-NRDEIFIAKPFGINELISKV 734 >gi|88608143|ref|YP_506255.1| sensor histidine kinase/response regulator [Neorickettsia sennetsu str. Miyayama] gi|88600312|gb|ABD45780.1| sensor histidine kinase/response regulator [Neorickettsia sennetsu str. Miyayama] Length = 742 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 72/113 (63%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 KILL ED+ +R FL+KAL + G+ V+ + SA +K EE +LL+TD+VMP MDG Sbjct: 623 KILLVEDEKIVRNFLVKALTRQGFSVIEYESSKSALEKFEEEKNTVALLITDVVMPGMDG 682 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ + + DLKV+F++G+ L+ DS ++ ++KPF + +L++++ Sbjct: 683 PEMVKEMRKQKADLKVLFMSGYTRDKLHLDSK-NRDEIFVAKPFGINELISKI 734 >gi|222149959|ref|YP_002550916.1| two component response regulator [Agrobacterium vitis S4] gi|221736941|gb|ACM37904.1| two component response regulator [Agrobacterium vitis S4] Length = 119 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 65/116 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D +R F+ +AL G+E +GA + + F LLL+DI MP MDGIE Sbjct: 3 KILITEDEDALRSFVARALRLDGHETHEAADGAEGLEMLATSNFDLLLSDIRMPVMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA RA P LK++ +TG+A D K V+ KPF L D+ V + LT Sbjct: 63 LAHRAHSDFPGLKILLMTGYAEQRERADDLLEKIIDVVPKPFALPDIRKAVAQALT 118 >gi|114570479|ref|YP_757159.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114340941|gb|ABI66221.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 853 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 +ILL ED+D +R+ K L K GY+VV +G AY+ + EE F L+++D+VMP +DG Sbjct: 732 RILLVEDEDAVRQIAAKTLVKRGYDVVEACDGEEAYEILEDDEEGFDLMISDVVMPGLDG 791 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++A ++ D +V+FI+G+AA + + ++ L KPF L L +V L Sbjct: 792 PGLLKKARDMLGDTRVVFISGYAAEQFSETLSQEQDVSFLPKPFTLTQLAEKVKEEL 848 >gi|209964224|ref|YP_002297139.1| cell cycle histidine kinase CckA [Rhodospirillum centenum SW] gi|209957690|gb|ACI98326.1| cell cycle histidine kinase CckA [Rhodospirillum centenum SW] Length = 831 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61 ILL ED+D +R F +AL GY V+ +G +A D++R E L++TD+VMP+MDG Sbjct: 712 ILLVEDEDAVRVFGARALRNKGYLVLEARSGEAALDQLRREGGPKVDLIITDVVMPQMDG 771 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R L P++KV+FI+G+ +A + L KPF L+ L ++V ++ Sbjct: 772 PTLIREVRRLRPEIKVIFISGYTEDRFRDAVDAGTRIEFLPKPFSLKQLASKVKEVMA 829 >gi|21242419|ref|NP_642001.1| response regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107861|gb|AAM36537.1| response regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 124 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 N +ILL EDDD +R LG GY VV+ + A ++ R PF LLL+DI +P M+ Sbjct: 7 NARILLVEDDDAIREMAADILGDEGYHVVASADAEHALTQLTRACPFDLLLSDICLPGMN 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA +A L P L ++F+TG+A ++L+KPF LRDL+ V L Sbjct: 67 GRDLADQARMLYPALPIVFMTGYAGEIAKRADFLDTGMRLLTKPFSLRDLLGIVQTAL 124 >gi|27382474|ref|NP_774003.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27355646|dbj|BAC52628.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 743 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 5/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ IL+ EDDD +R +++ L GY V++ NG +A D +R LL TD+VMP M Sbjct: 621 SETILVVEDDDMVRAYVVNELKTLGYRVIAAPNGPAALDLLRRPGDIHLLFTDVVMPGGM 680 Query: 60 DGIELARRATELDPDLKVMFITGFAAVAL-NPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELAR+AT L P+LKV+F +G+ + PD +A++L+KPF DL + L Sbjct: 681 FGPELARQATGLRPELKVLFTSGYTQNPVKTPDGLG--DARILTKPFRRHDLATMLRSAL 738 Query: 119 T 119 + Sbjct: 739 S 739 >gi|269962774|ref|ZP_06177115.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832464|gb|EEZ86582.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 209 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 65/117 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LLAEDD ++R LI+AL +EVV+C+N A D E+ F L L D+VM M Sbjct: 1 MTLKLLLAEDDVELREVLIEALTLESFEVVACDNAEDALDIASEQHFDLALFDVVMTGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE L P++ ++ T FA V + D+ + L+KPF+L L + R+ Sbjct: 61 GIEALSALRRLHPNIGIIITTAFATVDVAVDAMKKGADEFLTKPFNLAALSVTLKRV 117 >gi|163795227|ref|ZP_02189195.1| two-component hybrid sensor and regulator [alpha proteobacterium BAL199] gi|159179625|gb|EDP64154.1| two-component hybrid sensor and regulator [alpha proteobacterium BAL199] Length = 517 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EMD 60 ++ILL EDD+ MR ++ L GY+VV N +A +R ++ LL +D+VMP +M Sbjct: 398 ERILLVEDDEGMRTIALRQLHSLGYQVVEAENAEAALRILRGDQKIDLLFSDVVMPGDMT 457 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL+R A L PDLK + +GFA+ A + + +LSKP+ L DL + +L Sbjct: 458 GDELSRVAVALRPDLKTLLTSGFASGAAQNGTQSEDFRTLLSKPYRLVDLARRLREIL 515 >gi|116622423|ref|YP_824579.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225585|gb|ABJ84294.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 690 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED +D+RR + L GY V+ NG A D RE L+LTD++MP M+G Sbjct: 568 LLVVEDQEDVRRLAVLILEGLGYTVLEAANGNEALDVAREHQGCIRLMLTDVIMPGMNGR 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA + T + P++KV+F++G+ ++PD + L KPF L ++ +L Sbjct: 628 ELAEQMTAIRPEMKVVFMSGYTDRIMSPDGVLDSSVHYLQKPFAAEQLNAKIREVL 683 >gi|78047262|ref|YP_363437.1| response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035692|emb|CAJ23383.1| Response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 124 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 N +ILL EDDD +R LG GY VV+ + A ++ R PF LLL+DI +P M+ Sbjct: 7 NARILLVEDDDAIREMAADILGDEGYHVVASADAEHALTQLTRACPFDLLLSDICLPGMN 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA +A L P + ++F+TG+A ++L+KPF LRDL+ V L Sbjct: 67 GRDLADQARMLYPAMPIVFMTGYAGEIAKRADFLDTGMRLLTKPFSLRDLLGIVQTAL 124 >gi|294625166|ref|ZP_06703809.1| Response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664669|ref|ZP_06730003.1| Response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600538|gb|EFF44632.1| Response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605553|gb|EFF48870.1| Response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 163 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 N +ILL EDDD +R LG GY VV+ + A ++ R PF LLL+DI +P M+ Sbjct: 46 NARILLVEDDDAIREMAADILGDEGYHVVASADAEHALTQLTRACPFDLLLSDICLPGMN 105 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA +A L P L ++F+TG+A ++L+KPF LR+L+ V L Sbjct: 106 GRDLADQARMLYPALPIVFMTGYAGEIAKRADFLDTGMRLLTKPFSLRELLGTVQTAL 163 >gi|260777922|ref|ZP_05886815.1| flagellar regulatory protein C [Vibrio coralliilyticus ATCC BAA-450] gi|260605935|gb|EEX32220.1| flagellar regulatory protein C [Vibrio coralliilyticus ATCC BAA-450] Length = 210 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 64/117 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LLAEDD ++R LI+AL +EV + +N A D E PF L L D+VMP M Sbjct: 1 MTLKLLLAEDDQELREVLIEALTLESFEVTAFDNAEDALDAASENPFDLALFDVVMPGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E L P++ ++ T FA V + D+ + L+KPF+L L + R+ Sbjct: 61 GVEALTALRRLHPNIGIVITTAFATVDVAVDAMKKGADEFLTKPFNLPTLSVTLKRV 117 >gi|78187032|ref|YP_375075.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78166934|gb|ABB24032.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 817 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ D+ + L K GY V S +G SA K+ + +LLLTD+V+P M+G +L Sbjct: 696 ILIVEDEPDILHLVQTILEKIGYRVRSAPDGESAL-KLDPQGINLLLTDVVLPGMNGPQL 754 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E DPDL+ MF++G+A +L+ + + + KPF ++DLV V R L Sbjct: 755 YEIMQEADPDLQCMFMSGYAPESLDHLQSLQEGVNFIRKPFSIKDLVGLVQRSL 808 >gi|260752896|ref|YP_003225789.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552259|gb|ACV75205.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 811 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KILL ED++ +R L + GYEV++ NG A +R+ P LL++D+VMP MDG Sbjct: 693 KILLVEDEETVRNVASFGLVRQGYEVLTAENGEEALSILRKNPEIDLLISDVVMPGMDGP 752 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A ++ DL V+FI+G+A L S + ++ L KPF ++DL V+++L Sbjct: 753 RLGSEARKIKSDLPVLFISGYAEEQLR-RSISLEHVAFLPKPFSIQDLAVAVSKVL 807 >gi|241761141|ref|ZP_04759230.1| integral membrane sensor hybrid histidine kinase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374760|gb|EER64221.1| integral membrane sensor hybrid histidine kinase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 811 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KILL ED++ +R L + GYEV++ NG A +R+ P LL++D+VMP MDG Sbjct: 693 KILLVEDEETVRNVASFGLVRQGYEVLTAENGEEALSILRKNPEIDLLISDVVMPGMDGP 752 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A ++ DL V+FI+G+A L S + ++ L KPF ++DL V+++L Sbjct: 753 RLGSEARKIKSDLPVLFISGYAEEQLR-RSISLEHVAFLPKPFSIQDLAVAVSKVL 807 >gi|144899196|emb|CAM76060.1| sigma-54 dependent DNA-binding response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 483 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 70/118 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+A+DD +R L +ALG+AGYEV + N ++ + V E L++TD+VMP+ G Sbjct: 4 NSTILVADDDRGIRTVLAQALGRAGYEVRTTGNASTLWRWVSEGEGDLVITDVVMPDESG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++L R ++ PD++++ ++ + + + L KPF L++LV VNR LT Sbjct: 64 LDLLPRIKKIRPDMRIIVMSAQNTLLTAVKATQRGAFEYLPKPFDLKELVAVVNRALT 121 >gi|312115732|ref|YP_004013328.1| multi-sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311220861|gb|ADP72229.1| multi-sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 805 Score = 78.6 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62 +LL ED+D +R F +AL GY V+ +G A + + E L+++D+VMPEMDG Sbjct: 689 VLLVEDEDAVRSFASRALATRGYTVLEAASGVEALEIMDRHEGQVDLVVSDVVMPEMDGP 748 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R + +PD++++F++G+A A + +A +N L KPF L+ L V Sbjct: 749 TLLRHLRQRNPDIRIIFMSGYAEEAFRKNLSADENFVFLPKPFTLKKLAETV 800 >gi|170748647|ref|YP_001754907.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655169|gb|ACB24224.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 925 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL ED+D +R +AL GY V+ +G A VRE + L+++D+VMPEMDG Sbjct: 808 ILLVEDEDPVRAVNSRALSARGYTVLEAASGLEALAIVREGAQTIDLVVSDVVMPEMDGP 867 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + PDLKV+F++G+A A + + L KPF L+ LV V + + Sbjct: 868 TLLREVRKHQPDLKVIFVSGYAEDAFRKNLPEGETFNFLPKPFSLKQLVETVKKTM 923 >gi|163737064|ref|ZP_02144482.1| histidine kinase [Phaeobacter gallaeciensis BS107] gi|161389668|gb|EDQ14019.1| histidine kinase [Phaeobacter gallaeciensis BS107] Length = 1044 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 4/110 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 + ILLAED+ D+R L GY+V+S + A + +++ PF LLLTD+VMP + Sbjct: 926 GETILLAEDEPDLREMTRDMLVTLGYQVLSVGSAQQALELLQDSNPFDLLLTDVVMPGSI 985 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 G ELA R ++ P + V++ +GF PD P A +L KP H RD Sbjct: 986 GGFELANRIRQVHPGMPVIYTSGF--TGYTPDEMGPVTAPLLQKPVHPRD 1033 >gi|146343252|ref|YP_001208300.1| putative two-component response regulator [Bradyrhizobium sp. ORS278] gi|146196058|emb|CAL80085.1| putative two-component response regulator [Bradyrhizobium sp. ORS278] Length = 126 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 12/127 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 ++L+A+D+D MR + +A+ G+E V+ +GA A D + E F LLLTDI MP MD Sbjct: 2 SRVLIADDEDSMRTLVARAIAMDGHETVTAQDGAEALDILTRENGAFDLLLTDIQMPIMD 61 Query: 61 GIELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 GI LA A PDL ++ +TGFA A LN ++ V++KPF + D+ V Sbjct: 62 GIALALSAARDFPDLTILLMTGFAHQRERASNLNAIAH-----DVITKPFSVADIRTAVA 116 Query: 116 RLLTIKN 122 L K Sbjct: 117 DALASKT 123 >gi|328952924|ref|YP_004370258.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328453248|gb|AEB09077.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 449 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 66/107 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ R L L K GYE V+ NG+ AY+++ + F L+LTD+ M ++DG++ Sbjct: 5 RILIVEDETISRENLQHVLEKEGYETVAVENGSLAYEELAQGEFDLVLTDLRMQQIDGLQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RA EL PD++V+ ITG+A V ++ L+KP+ + ++ Sbjct: 65 VLARAKELQPDIEVIVITGYATVTSAVEAMQKGAYHYLAKPYKIEEV 111 >gi|83594152|ref|YP_427904.1| multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA [Rhodospirillum rubrum ATCC 11170] gi|83577066|gb|ABC23617.1| multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA [Rhodospirillum rubrum ATCC 11170] Length = 829 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + ILL ED+D +R F +AL GY V+ +G A D + + LL+TD+VMP MDG Sbjct: 712 ETILLVEDEDAVRVFGSRALRNKGYTVLEARSGEGALDVLEDGAEIDLLITDMVMPGMDG 771 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA R E PDLK++ I+G++ + D + L KPF L+ L +V +L Sbjct: 772 ATLAGRVREARPDLKIILISGYSEDVIRGDIVNQPDTHFLPKPFSLKALAEKVREVL 828 >gi|56551497|ref|YP_162336.1| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543071|gb|AAV89225.1| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4] Length = 811 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KILL ED++ +R L + GYEV++ NG A +R+ P LL++D+VMP MDG Sbjct: 693 KILLVEDEETVRNVASFGLVRQGYEVLTAENGEEALSILRKNPEIDLLISDVVMPGMDGP 752 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A ++ DL V+FI+G+A L S + ++ L KPF ++DL V+++L Sbjct: 753 RLGIEARKIKSDLPVLFISGYAEEQLR-RSISLEHVAFLPKPFSIQDLAVAVSKVL 807 >gi|289661808|ref|ZP_06483389.1| response regulator [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668762|ref|ZP_06489837.1| response regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 124 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 N +ILL EDDD +R LG GY VV+ + A ++ + PF LLL+DI +P M+ Sbjct: 7 NARILLVEDDDAIREMAADILGDEGYHVVASADAEQALTQLTKACPFDLLLSDICLPGMN 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA +A + P L ++F+TG+A ++L+KPF LRDL+ V L Sbjct: 67 GRDLADKARIICPALPIVFMTGYAGEIAKRADFLDAGMRLLTKPFSLRDLLGIVQTAL 124 >gi|166713060|ref|ZP_02244267.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 653 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 N++ILL +D D +R + + LG AGY+V+ + A +++R + F L+++D+ +P M+ Sbjct: 528 NERILLVDDTDVVRMMVSEVLGDAGYQVIEAEDANGALEQLRTDLHFDLVVSDVGLPGMN 587 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L ++FITG+A A + +L KPF L DL+N V ++L Sbjct: 588 GRDMADVARMLRPGLPILFITGYAENAATRQEFLTEGMALLPKPFSLNDLLNTVGQML 645 >gi|162457084|ref|YP_001619451.1| response regulator [Sorangium cellulosum 'So ce 56'] gi|161167666|emb|CAN98971.1| response regulator [Sorangium cellulosum 'So ce 56'] Length = 244 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 64/118 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ MR L L GYEVV +GA A + VR+ F+L+LTD+ MP +DG+ Sbjct: 7 VLVVDDEEGMRATLAANLELEGYEVVEARDGAHALELVRQRRFALVLTDVRMPGLDGVAT 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R L P+L V+ +TGFA L V+ KPF + L+ + R L+ + Sbjct: 67 FREIKRLQPELTVVLMTGFAREQLIEQGIGEGVYAVIYKPFSMEHLMRIIARALSSRG 124 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/115 (21%), Positives = 54/115 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +L+ +D + ++ L AG + +G +A + R+ + + D+ MP +DG Sbjct: 122 SRGVLVVDDLPAVAESIVAGLTAAGLRAEAAYDGHTAIQRARDAAVDVCVLDLRMPSLDG 181 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + + L + V+ +TG A + + L KPF +R+L++ + R Sbjct: 182 VRTHEQIRRLSRGITVIAMTGHATPEMIHAFTSQGGYACLHKPFEVRELMHTIAR 236 >gi|254470428|ref|ZP_05083832.1| sensory box sensor histidine kinase/response regulator [Pseudovibrio sp. JE062] gi|211960739|gb|EEA95935.1| sensory box sensor histidine kinase/response regulator [Pseudovibrio sp. JE062] Length = 854 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL ED++ +R F +AL GYEV +G A + + E L+++D+VMPEMDG Sbjct: 731 ILLVEDEEAVRAFAARALSGRGYEVFEAGSGTEALEVMEETGGAVDLVVSDVVMPEMDGP 790 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + PDLK++F++G+A A + A ++ L KPF L+ L V L K Sbjct: 791 SLLIELRKTRPDLKIIFVSGYAEDAFEKNLPAEESFTFLPKPFTLKQLATTVKETLEAKT 850 >gi|188992001|ref|YP_001904011.1| Response regulator [Xanthomonas campestris pv. campestris str. B100] gi|167733761|emb|CAP51966.1| Response regulator [Xanthomonas campestris pv. campestris] Length = 124 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 + +ILL ED+D +R L + GY VV+ + A +++ P F LLL+DI +P M+ Sbjct: 7 HARILLVEDNDAIRLMTTDILSEEGYTVVAAEDAEVALQQLQNLPVFDLLLSDICLPGMN 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G +LA A L P L ++F+TGFA A ++L+KPF LRDL++ V Sbjct: 67 GRDLADNARVLYPSLPIVFMTGFAGAASARKDFLASGMRLLTKPFTLRDLLDTV 120 >gi|27376499|ref|NP_768028.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349640|dbj|BAC46653.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 124 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 KIL+A+D+D MR+ + +A+ G+E V+ +GA A + + E F LLLTDI MP MDG Sbjct: 3 KILIADDEDSMRQLVARAIAMDGHETVTAQDGAEALEILTREDGAFDLLLTDIQMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 I LA A PDL ++ +TGFA + V++KPF + D+ V L K Sbjct: 63 IALALSAARDFPDLTILLMTGFADQRERASNLNALVHDVVTKPFSVADIRTAVADALAAK 122 Query: 122 N 122 Sbjct: 123 K 123 >gi|148252742|ref|YP_001237327.1| putative two-component response regulator [Bradyrhizobium sp. BTAi1] gi|146404915|gb|ABQ33421.1| putative two-component response regulator [Bradyrhizobium sp. BTAi1] Length = 126 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 ++L+A+D++ MR + +A+ G+E+V+ +GA A D + E F LLLTDI MP MD Sbjct: 2 SRVLIADDEESMRTLVARAIAMDGHEIVTAQDGAEALDILTRENGAFDLLLTDIQMPIMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI LA A PDL ++ +TGFA + V++KPF + D+ V L Sbjct: 62 GIALALSAARDYPDLVILLMTGFAHQRERASNLQAIAHDVITKPFSVADIRTAVADALAS 121 Query: 121 K 121 K Sbjct: 122 K 122 >gi|58698195|ref|ZP_00373116.1| sensor histidine kinase/response regulator [Wolbachia endosymbiont of Drosophila ananassae] gi|58535276|gb|EAL59354.1| sensor histidine kinase/response regulator [Wolbachia endosymbiont of Drosophila ananassae] Length = 287 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 N ILL ED+D +R F+ KAL + G++V+ + G+ A + + + + L++TD++MPE+ Sbjct: 161 NGIILLIEDEDSVREFISKALKRKGFDVIEASIGSEALEIISKKSQHIDLIITDVIMPEV 220 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + A P++ V+FI+G+A A L D ++ L KPF L +L N+V +L Sbjct: 221 SGPEIVKEALIHRPNINVIFISGYAEDAFLKSDDINIEDFHFLPKPFTLNELGNKVQSVL 280 >gi|58584967|ref|YP_198540.1| signal transduction histidine kinase and receiver [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419283|gb|AAW71298.1| Membrane associated signal transduction histidine kinase and receiver domain [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 826 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 N ILL ED+D +R F+ KAL + G++V+ + G+ A + + + + L++TD++MPE+ Sbjct: 700 NGIILLIEDEDSVREFITKALKRKGFDVIEASMGSKALEIISKKNQHIDLIITDVIMPEV 759 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + A PD+ V+FI+G+ A L D+ ++ L KPF L +L N+V +L Sbjct: 760 SGPEIVKEALIHRPDINVIFISGYTEDAFLKNDNINIEDFHFLPKPFTLSELGNKVQSVL 819 >gi|116624209|ref|YP_826365.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116227371|gb|ABJ86080.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 119 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R FL A AGYEV + G+ A + +E F L+L+DI+MP M+G + Sbjct: 5 RILIVDDDTQVRSFLTLAFENAGYEVKTAGCGSDAIALLSQESFDLMLSDIMMPGMNGHQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR P + ++GF AV + D AP K+++KPF ++V+ V ++L Sbjct: 65 LARWVIHHFPATRTALMSGFDAVCESCD-YAPA-CKLIAKPFTSSEVVSFVRQML 117 >gi|304321954|ref|YP_003855597.1| sensory box histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] gi|303300856|gb|ADM10455.1| sensory box histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] Length = 996 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +IL+ ED+ +R +++ALG GY++V +G A + + ++ F ++L+DI+MPEMDG Sbjct: 878 RILIVEDETSVRNVVVRALGSCGYDIVEAADGDEALEIIEDDDGHFDVILSDIMMPEMDG 937 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + A + +KV+F++G+A A+ K A L KPF L+ + V +T Sbjct: 938 PTLIQEAGDKIAGVKVIFMSGYAETAMRDKLGEIKGAGYLQKPFTLKKVAAVVKEAMT 995 >gi|21231106|ref|NP_637023.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768886|ref|YP_243648.1| response regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21112739|gb|AAM40947.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574218|gb|AAY49628.1| response regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 124 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 1/114 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 + +ILL ED+D +R L GY VV+ + A +++ P F LLL+DI +P M+ Sbjct: 7 HARILLVEDNDAIRLMTTDILSDEGYTVVAAEDAEVALQQLQNLPVFDLLLSDICLPGMN 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G +LA A L P L ++F+TGFA A ++L+KPF LRDL++ V Sbjct: 67 GRDLADNARVLYPSLPIVFMTGFAGAASARKDFLASGMRLLTKPFTLRDLLDTV 120 >gi|94264089|ref|ZP_01287888.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455505|gb|EAT05695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 493 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 1/116 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ +MR L +AL ++G++V NG A + + ++P L++TDI MPEMD Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE+ ++ P L V+ ITG+A V ++ + KPF + ++++E R Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPV-EVIDETVR 115 >gi|94269909|ref|ZP_01291598.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451023|gb|EAT01990.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 493 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 1/116 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ +MR L +AL ++G++V NG A + + ++P L++TDI MPEMD Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE+ ++ P L V+ ITG+A V ++ + KPF + ++++E R Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPV-EVIDETVR 115 >gi|116748165|ref|YP_844852.1| response regulator receiver modulated diguanylate cyclase [Syntrophobacter fumaroxidans MPOB] gi|116697229|gb|ABK16417.1| response regulator receiver modulated diguanylate cyclase [Syntrophobacter fumaroxidans MPOB] Length = 307 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 72/117 (61%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q IL+ +D+ +R F+ +AL G+EV + +G A +K+ + FS+++TD+VMP MDG Sbjct: 12 SQHILVVDDEQPVRDFVAEALESMGHEVQTAVDGRDALEKMEDSDFSVVITDMVMPRMDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L R +E ++ ++ ITG A D A + ++KPF + +L ++NRL+ Sbjct: 72 MQLIRYLSEHQNEVDIIAITGLAMDYKYTDVVAAGASDFITKPFTMNELEAKLNRLI 128 >gi|154248554|ref|YP_001419512.1| multi-sensor hybrid histidine kinase [Xanthobacter autotrophicus Py2] gi|154162639|gb|ABS69855.1| multi-sensor hybrid histidine kinase [Xanthobacter autotrophicus Py2] Length = 857 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 ++LL ED+D +R F +AL GYEV++ +G A + ++++D+VMPEMDG Sbjct: 740 RVLLVEDEDAVRAFASRALANRGYEVLAAASGVEALELFETAGKVDIVISDVVMPEMDGP 799 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R DP LKV+FI+G+A A + + L KPF L+ LV V+ L Sbjct: 800 TLLRELRARDPALKVIFISGYAEEAFARNLPPSERFSFLPKPFSLKQLVAAVSETL 855 >gi|156976385|ref|YP_001447291.1| transcriptional regulatory protein CpxR [Vibrio harveyi ATCC BAA-1116] gi|156527979|gb|ABU73064.1| hypothetical protein VIBHAR_05158 [Vibrio harveyi ATCC BAA-1116] Length = 209 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 64/117 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LLAEDD ++R L++AL ++VV+C+N A D E+ F L L D+VM M Sbjct: 1 MTLKLLLAEDDTELREVLVEALTLESFQVVACDNAEDALDIASEQHFDLALFDVVMTGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE P++ ++ T FA V + D+ + L+KPF+L L + R+ Sbjct: 61 GIEALSTLRRQHPNIGIIITTAFATVDVAVDAMKKGADEFLTKPFNLSALSVTLRRV 117 >gi|320353193|ref|YP_004194532.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320121695|gb|ADW17241.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 122 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD+ MR L + + AGYEV +G K R +P +L++TD++MPE +G++ Sbjct: 2 RILVIDDDEQMRILLRQVMEWAGYEVTEAGDGREGMHKQRRQPANLVITDLIMPEQEGLK 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P++K++ I+G + A P + +V SKPF +R+LV+ V LL Sbjct: 62 TITSLKKEFPEVKIIAISGGGRIGPEAYLPAAQELGADRVFSKPFEVRELVDAVKELL 119 >gi|163740513|ref|ZP_02147907.1| two-component hybrid sensor and regulator [Phaeobacter gallaeciensis 2.10] gi|161386371|gb|EDQ10746.1| two-component hybrid sensor and regulator [Phaeobacter gallaeciensis 2.10] Length = 1044 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 4/110 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 + ILLAED+ D+R L GY+V+ + A + +++ PF LLLTD+VMP + Sbjct: 926 GETILLAEDEPDLREMTRDMLVTLGYQVLPVGSAQQALELLQDSNPFDLLLTDVVMPGSI 985 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 G ELA R ++ P + V++ +GF PD P A +L KP H RD Sbjct: 986 GGFELASRIRQVHPGMPVIYTSGF--TGYTPDEMGPVTAPLLQKPVHPRD 1033 >gi|162456090|ref|YP_001618457.1| hypothetical protein sce7808 [Sorangium cellulosum 'So ce 56'] gi|161166672|emb|CAN97977.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 146 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDDD+ RF++ GY+ + S + F LL+TDI MP MDGIEL Sbjct: 8 VLVVEDDDDLGRFVVDIAKDHGYQATHVADAMSGLGLLPSGGFDLLITDIRMPGMDGIEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA E DP L ++ IT F +V + + LSKPF +L + + R L Sbjct: 68 IARAKEHDPSLAIIAITAFGSVETGMRALRVGASDYLSKPFRSDELSSRMRRAL 121 >gi|42521013|ref|NP_966928.1| sensor histidine kinase/response regulator [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410754|gb|AAS14862.1| sensor histidine kinase/response regulator [Wolbachia endosymbiont of Drosophila melanogaster] Length = 417 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 N ILL ED+D +R F+ KAL + G++V+ + G+ A + + + + L++TD++MPE+ Sbjct: 291 NGIILLIEDEDSVREFISKALKRKGFDVIEASIGSEAPEIISKKSQHIDLIITDVIMPEV 350 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + A P++ V+FI+G+A A L D ++ L KPF L +L N+V +L Sbjct: 351 SGPEIVKEALIHRPNINVIFISGYAEDAFLKSDDINIEDFHFLPKPFTLNELGNKVQSVL 410 >gi|254444094|ref|ZP_05057570.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258402|gb|EDY82710.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 658 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + IL+ EDD+ M + LG Y+V S N A D E E LL+TD+++P+M Sbjct: 533 ESILVVEDDETMCDCISGLLGLYNYQVYSTNQAEDALDFFEESHEDIKLLITDLILPKMR 592 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA R + +PD+KV+ +TG++ L+ N P++A +L KPF L+ + V +LL+ Sbjct: 593 GSELAERLIKKNPDMKVIVMTGYSEELLS-QFNIPEDAILLKKPFSLKAALTAVQKLLS 650 >gi|163847687|ref|YP_001635731.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222525546|ref|YP_002570017.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668976|gb|ABY35342.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449425|gb|ACM53691.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1031 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD D+ + L GY V + +A +++E LLLTD+VMPEMDG+ Sbjct: 919 RILVVDDDADLLQITATTLHNLGYTVFTATASKAALTILQDEAIDLLLTDVVMPEMDGLM 978 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A ++ P LKV++++GFAA+ N V+ KPF L V + L Sbjct: 979 LAAAAQQISPSLKVLYMSGFAAL----QGTDMSNLAVIEKPFRASTLEVAVQQAL 1029 >gi|328543171|ref|YP_004303280.1| Sensor kinase [polymorphum gilvum SL003B-26A1] gi|326412917|gb|ADZ69980.1| Sensor kinase [Polymorphum gilvum SL003B-26A1] Length = 849 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL ED++ +R F +AL GY V +G A D + E L+++D+VMPEMDG Sbjct: 732 ILLVEDEEAVRAFAARALASRGYTVHEAASGTEALDVMEETGGKVDLVVSDVVMPEMDGP 791 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + + PDLK++F++G+A A + N P+N K L KPF L+ L V +L Sbjct: 792 TLLKELRKTRPDLKIIFVSGYAEDAF--EENLPENEKFFFLPKPFTLKQLATTVKDVL 847 >gi|225677205|ref|ZP_03788198.1| sensor histidine kinase/response regulator [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590729|gb|EEH11963.1| sensor histidine kinase/response regulator [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 826 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 N ILL ED+D +R F+ KAL + G++V+ + G+ A + + + + L++TD++MPE+ Sbjct: 700 NGIILLIEDEDSVREFISKALKRKGFDVIEASIGSEALEIISKKSQHIDLIITDVIMPEV 759 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + A P++ V+FI+G+A A L D ++ L KPF L +L N+V +L Sbjct: 760 SGPEIVKEALIHRPNINVIFISGYAEDAFLKSDDINIEDFHFLPKPFTLNELGNKVQSVL 819 >gi|146278773|ref|YP_001168932.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145557014|gb|ABP71627.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 943 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ EDD +R L + L +AGY V G +A ++R+E +LL D+ +P+M G+ Sbjct: 824 RHVLVCEDDVIIRMNLAETLAEAGYRVTQAGAGGAALLQIRQEAPDMLLVDLGLPDMSGL 883 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR A + PDL ++F TG + + PD +A VL KPF ++ V RLL Sbjct: 884 ELARTARTIRPDLPILFATGDSQI---PDLEFRPHADVLIKPFGDEAMLECVARLL 936 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ ILL EDD+ +R L GY V+ + A V LL TD+VMP ++ Sbjct: 692 DETILLVEDDEQVRLTAAGLLHDLGYAVLQARDADRALTIVESGARIDLLFTDVVMPGQL 751 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +LA +A L P L V+F +G+ ++ +LSKP+ L ++ +L+ Sbjct: 752 NSRQLAEKARMLRPGLPVLFTSGYTQNSIVHGGRLDSGVHLLSKPYTQEALARKIREVLS 811 >gi|78186714|ref|YP_374757.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78166616|gb|ABB23714.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 698 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ D+ + L K GY V S +G SA K+ + SLLLTD+V+P M+G L Sbjct: 577 ILIVEDEPDILHLVQTILEKIGYRVRSAPDGESAL-KLDPQGISLLLTDVVLPGMNGPRL 635 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + DPDL+ +F++G+A +L+ + + + KPF ++D ++ V R L Sbjct: 636 YEQMRAADPDLQCLFMSGYAPESLDHHQSLQEGVNFIRKPFSIKDFISLVRRSL 689 >gi|163793402|ref|ZP_02187377.1| putative two-component sensor histidine kinase protein [alpha proteobacterium BAL199] gi|159181204|gb|EDP65719.1| putative two-component sensor histidine kinase protein [alpha proteobacterium BAL199] Length = 747 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 N+ IL+ EDD D+R + L + Y V+ + G + + + P +LL+TD+VMP MD Sbjct: 628 NETILVVEDDADVRAATVAMLQELEYTVLEASGGVAGLEILDAHPEIALLMTDVVMPGMD 687 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA ATE PDL+V+F TG+ A+ + ++ KP+ L L +V+ +L+ Sbjct: 688 GRQLATAATERRPDLRVLFTTGYTRNAIVHHGVLDPDVSMIGKPYTLEALSQKVSEVLS 746 >gi|153831632|ref|ZP_01984299.1| sigma-54 dependent transcriptional regulator/response regulator [Vibrio harveyi HY01] gi|148872142|gb|EDL70959.1| sigma-54 dependent transcriptional regulator/response regulator [Vibrio harveyi HY01] Length = 209 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 64/117 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LLAEDD ++R L++AL ++VV+C+N A D E+ F L L D+VM M Sbjct: 1 MTLKLLLAEDDAELREVLVEALTLESFQVVACDNAEDALDIASEQHFDLALFDVVMTGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE P++ ++ T FA V + D+ + L+KPF+L L + R+ Sbjct: 61 GIEALSTLRRQHPNIGIIITTAFATVDVAVDAMKKGADEFLTKPFNLSALSVTLRRV 117 >gi|295690484|ref|YP_003594177.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432387|gb|ADG11559.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 575 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 5/119 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 Q++LL EDDD + + + L + GYEV +GASA D +R +P F L+ +D+VMP ++ Sbjct: 453 RQRVLLVEDDDSVAHLVEEMLRELGYEVKRVGDGASALDTLRSDPSFQLVFSDMVMPGDI 512 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++LAR + L PDL V+ TG++A A + + +VL KP+ + L E++ +L Sbjct: 513 GGLDLARDISRLRPDLPVVLTTGYSAAAAA---ASKEGRRVLVKPYRIEALAAELDAVL 568 >gi|254424941|ref|ZP_05038659.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192430|gb|EDX87394.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 216 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+A+D+ +R + +AL GYEV + +G++A ++++E P LLL DI MP M G Sbjct: 3 NASILVADDEKSIRLTVAQALSSQGYEVATAIDGSTALEQLKETPTDLLLLDIQMPGMTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 IE+ ++A P LKV+ ++ +V ++ L KPF LR+LVN V Sbjct: 63 IEVLQKAITQQPSLKVVMVSAHGSVDNAVEAMKLGAVDYLQKPFTPSELRELVNRV 118 >gi|170743253|ref|YP_001771908.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197527|gb|ACA19474.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 869 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62 ILL ED+D +R +AL GY V+ +G A + R+ P L+++D+VMPEMDG Sbjct: 752 ILLVEDEDPVRAVNARALAARGYTVLEAASGLEALAIIGERDTPVDLVVSDVVMPEMDGP 811 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R + P LKV+F++G+A A + + L KPF L+ LV V + + Sbjct: 812 TLLRELRKRHPTLKVIFVSGYAEDAFQKNLPEGEEFNFLPKPFSLKQLVETVKTTMAV 869 >gi|309790446|ref|ZP_07685007.1| PAS domain S-box protein [Oscillochloris trichoides DG6] gi|308227494|gb|EFO81161.1| PAS domain S-box protein [Oscillochloris trichoides DG6] Length = 168 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 6/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPEMDG 61 ILL +D+ D+R L++ L + GY++V +G A D + P LL+TD+ MP + G Sbjct: 40 ILLVDDEPDLRSLLVRVLRREGYQIVDAADGLEALDLFAHLSHHPIHLLITDLDMPRLGG 99 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++LAR E + +V+F+TG +AP++ +L KPFH R L VN++L Sbjct: 100 LDLARHLRETNRVQRVIFMTGDMNRV---GPHAPEHHALLQKPFHPRLLAQVVNQIL 153 >gi|87199467|ref|YP_496724.1| multi-sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87135148|gb|ABD25890.1| multi-sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 811 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 ++LL ED+D +R +AL + GYEV + +G + + R+ F L+++D+VMP MDG Sbjct: 694 RVLLVEDEDTVRAVAERALTRQGYEVTTAADGEEGLEAIGRDGDFDLVVSDVVMPTMDGP 753 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR L P + +F++G+A L + + P N L+KPF ++ + V ++L Sbjct: 754 AMAREIRALRPSMPFLFMSGYAEEQLRREIDIP-NMHFLAKPFSVQQICEAVEQVL 808 >gi|289670376|ref|ZP_06491451.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 436 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 N++ILL +D D +R + + LG AGY+V+ + A +++R + L+++D+ +P M+ Sbjct: 311 NERILLVDDTDVVRMMVSEVLGDAGYQVIEAEDANGALEQLRTDVHIDLVVSDVGLPGMN 370 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L ++FITG+A A + +L KPF L DL+N V ++L Sbjct: 371 GRDMADVARMLRPGLPILFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNTVGQML 428 >gi|170750394|ref|YP_001756654.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] gi|170656916|gb|ACB25971.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] Length = 121 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +ILL +D++ +R FL + L G+ VV+ N+G+ D++ E F L+LTDI MP MDG Sbjct: 3 RILLVDDEETVRGFLKRGLEIDGHAVVTANDGSDGLDRLNEADGGFDLMLTDIRMPLMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I LA A PDL ++ +TGFA VL+KPF L DL V R L Sbjct: 63 IALALAAKRDFPDLTILLMTGFADQRERARGLDAIVTDVLTKPFSLADLRATVKRAL 119 >gi|75675331|ref|YP_317752.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420201|gb|ABA04400.1| cell cycle control histidine kinase CckA [Nitrobacter winogradskyi Nb-255] Length = 888 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 6/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ +NG A + + E+ L+++D+VMPEMDG Sbjct: 770 ILLVEDEEGLRSLNARGLRSRGYSVIEASNGIEALEALDEKDGAVDLVVSDVVMPEMDGP 829 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLT 119 L R+ +P+LK++F++G+A A D + P+N + L+KPF L L+ +V +T Sbjct: 830 TLLRKMRVRNPNLKIIFVSGYAEEAF--DKSLPENEQFAFLAKPFALSALIAKVKETMT 886 >gi|158523278|ref|YP_001531148.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512104|gb|ABW69071.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1079 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 Q +L+ ED++ + R K L GY V++ A+A + ++ P LL+TD+VMPEM+ Sbjct: 958 QTVLVVEDEEAILRLADKMLTGMGYTVLTAPGPAAALELAKQHTGPIDLLITDVVMPEMN 1017 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA++ E PDL+V+F++G+ A + + + + KPF+ DL +V L Sbjct: 1018 GRDLAKKLREGYPDLRVLFMSGYTANVIAHRGILDRGVQFIQKPFNKSDLARKVREAL 1075 >gi|220925375|ref|YP_002500677.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949982|gb|ACL60374.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 890 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62 ILL ED+D +R +AL GY V+ +G A + R+ P L+++D+VMPEMDG Sbjct: 773 ILLVEDEDPVRAVNARALAARGYTVLEAASGVEALSIIGERDTPVDLVVSDVVMPEMDGP 832 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R + P+LKV+F++G+A A + + L KPF L+ LV V Sbjct: 833 TLLRELRKRHPELKVIFVSGYAEDAFQKNLPEGEEFNFLPKPFSLKQLVETV 884 >gi|289662748|ref|ZP_06484329.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 653 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 N++ILL +D D +R + + LG AGY+V+ + A +++R + L+++D+ +P M+ Sbjct: 528 NERILLVDDTDVVRMMVSEVLGDAGYQVIEAEDANGALEQLRTDVHIDLVVSDVGLPGMN 587 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L ++FITG+A A + +L KPF L DL+N V ++L Sbjct: 588 GRDMADVARMLRPGLPILFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNTVGQML 645 >gi|21230633|ref|NP_636550.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769371|ref|YP_244133.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992557|ref|YP_001904567.1| Putative two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris str. B100] gi|21112216|gb|AAM40474.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574703|gb|AAY50113.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734317|emb|CAP52527.1| Putative two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris] Length = 646 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 +Q+ILL +D D +R + + L AGY V+ N A ++R + ++++D+ +P M+ Sbjct: 528 SQRILLVDDTDVVRMMVSEVLSDAGYHVIEAENADGALAQLRADAQIDMVVSDVGLPGMN 587 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A +L P L ++FITG+A A + +L KPF L DL+N V+R+L Sbjct: 588 GRDMADVARDLRPGLPILFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNTVSRML 645 >gi|190571360|ref|YP_001975718.1| membrane associated signal transduction histidine kinase and receiver domain [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018758|ref|ZP_03334566.1| membrane associated signal transduction histidine kinase and receiver domain [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357632|emb|CAQ55074.1| membrane associated signal transduction histidine kinase and receiver domain [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995709|gb|EEB56349.1| membrane associated signal transduction histidine kinase and receiver domain [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 826 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 N ILL ED+D +R F KAL + G+ V+ + G+ A + +R+ + L++TD++MPE+ Sbjct: 698 NGIILLIEDEDSVREFTAKALTRKGFNVIEASIGSEALEIIRKKNQHIDLIITDVIMPEV 757 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + P++KV+FI+G+ A L D ++ L KPF L +L N+V +L Sbjct: 758 SGPEIVKETLIHRPNIKVIFISGYTEDAFLKSDEINIEDFHFLPKPFTLNELGNKVQSVL 817 >gi|260467157|ref|ZP_05813335.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259029081|gb|EEW30379.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 612 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 + + IL+ EDD +R A+ + GYEV+ +G A +K+ P +LL TDIVMP M Sbjct: 491 VTETILVVEDDAQVRAATTDAMRELGYEVIDVGSGQEALEKLAATPGIALLFTDIVMPVM 550 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G +LA A P LKV+F TGF A+ + + L+KPF + L ++ +L Sbjct: 551 NGRKLAEEAVARQPGLKVIFTTGFTRNAVVHNGVLDHDVNFLAKPFTIEQLAAKLREVLD 610 Query: 120 IK 121 K Sbjct: 611 TK 612 >gi|56416709|ref|YP_153783.1| sensory box histidine kinase/response regulator [Anaplasma marginale str. St. Maries] gi|222475075|ref|YP_002563490.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Florida] gi|255003053|ref|ZP_05278017.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Puerto Rico] gi|255004176|ref|ZP_05278977.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Virginia] gi|56387941|gb|AAV86528.1| sensory box histidine kinase/response regulator [Anaplasma marginale str. St. Maries] gi|222419211|gb|ACM49234.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Florida] Length = 827 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+D +R F KAL K G+ V+ N+G +A + + ++++D+VMP G E Sbjct: 709 VLLIEDEDPVRAFTSKALSKRGFRVIDTNSGKAAIETAKSTHIDIVISDVVMPGTSGPET 768 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 ++ P++KVMF++G+A + N + LSKPF L+ L+ +V+ L Sbjct: 769 VAEILKIQPNVKVMFVSGYAEEIFHQHKNINLDEMFFLSKPFTLKQLLQKVSEAL 823 >gi|297569164|ref|YP_003690508.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296925079|gb|ADH85889.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 505 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 60/105 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ +MR L +AL + GYEV NG A + V E L++TDI MPEMD Sbjct: 4 MGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 GI + ++ + P L V+ ITG+A V ++ + KPF Sbjct: 64 GIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPF 108 >gi|32188219|gb|AAP46184.1| gellan polysaccharide biosynthesis regulator protein [Sphingomonas elodea] Length = 796 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 IL+ ED+D +R +AL + GY VV+ NG A + + ++P LL++D+VMP MDG Sbjct: 680 ILVVEDEDMVRAIAERALSRQGYSVVTAENGEVALETIETMDKP-DLLVSDVVMPVMDGP 738 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +AR+ E PDL ++F++G+A L + N L KPF ++ L V +L K Sbjct: 739 SMARKVRERWPDLPILFMSGYAEEQLRRSIDL-DNVAFLPKPFSVQQLAEAVQEILVAK 796 >gi|21242027|ref|NP_641609.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107427|gb|AAM36145.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 651 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 N++ILL +D D +R + + L AGY+V+ + A +++R E L+++D+ +P M+ Sbjct: 526 NERILLVDDTDVVRMMVSEVLSDAGYQVIEAEDANGALEQLRTEVHIDLVVSDVGLPGMN 585 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L V+FITG+A A + +L KPF L DL+N V ++L Sbjct: 586 GRDMADVARMLRPGLPVLFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNTVGQML 643 >gi|83311466|ref|YP_421730.1| response regulator containing CheY-like receiver [Magnetospirillum magneticum AMB-1] gi|82946307|dbj|BAE51171.1| Response regulator containing CheY-like receiver [Magnetospirillum magneticum AMB-1] Length = 487 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 69/115 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG+AGYEV + N ++ + V E L++TD+VMP+ G++L Sbjct: 12 ILVADDDRGIRTVLSQALGRAGYEVRTTGNASTLWRWVSEGEGDLVITDVVMPDESGLDL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ P+L+++ ++ + + + L KPF L++LVN V R L+ Sbjct: 72 LPRMKKIRPELRIIVMSAQNTLLTAVKATQRGAFEYLPKPFDLKELVNVVGRALS 126 >gi|117926717|ref|YP_867334.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117610473|gb|ABK45928.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 223 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 66/115 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + R L + + G+E+ N+G SA +V+ EPF ++L D++MP MDGIE Sbjct: 6 RLLIVDDDAEFRENLSQIMLAHGFEIEETNSGKSALSRVQSEPFDIVLLDMMMPGMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L K++ IT F+ V ++ + +SKPF + +L+ + R L Sbjct: 66 TLREMEKLSQHPKIILITAFSTVQNAVEAIKRGASDYVSKPFKVEELLAVIQRTL 120 >gi|197119978|ref|YP_002140405.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197089338|gb|ACH40609.1| sensor histidine kinase response regulator, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 845 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ ILL ED+ +R I L GY V++ A + R + L++TD+VMPEM Sbjct: 722 HETILLVEDEPSIREVTISLLQLQGYRVLAAGLPREALELARAHADEIDLVMTDVVMPEM 781 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G ELAR + P LKV+F++G+ A + + +SKPF L DL +V +L Sbjct: 782 NGRELARSLLAISPRLKVLFMSGYTANVIAHHGVLEEGVNFISKPFSLPDLAEKVREVLD 841 Query: 120 IK 121 K Sbjct: 842 AK 843 >gi|78046880|ref|YP_363055.1| putative two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035310|emb|CAJ22955.1| putative two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 651 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 N++ILL +D D +R + + L AGY+V+ + A + +R E L+++D+ +P M+ Sbjct: 526 NERILLVDDTDVVRMMVSEVLSDAGYQVIEAEDANGALEHLRTEAHIDLVVSDVGLPGMN 585 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L ++FITG+A A + +L KPF L DL+N V ++L Sbjct: 586 GRDMADVARTLRPGLPILFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNTVGQML 643 >gi|295691322|ref|YP_003595015.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295433225|gb|ADG12397.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 702 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 4/117 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD +RRF+++ L GY V +G +++ E LL+ D MP MDG Sbjct: 558 ERILVIDDDPSVRRFIVQCLRSLGYRVAEAASGNEGLERLAREAPDLLIVDFAMPGMDGA 617 Query: 63 ELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ARRA + P L V+ +TG+A A A+ N+ VL KPF + DL V + L Sbjct: 618 QVARRARQASPCLGVLLVTGYADAGAIRELVNS---EAVLRKPFKVTDLALAVRKAL 671 >gi|163852278|ref|YP_001640321.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218531036|ref|YP_002421852.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] gi|240139611|ref|YP_002964087.1| putative response regulator (CheY-like protein) [Methylobacterium extorquens AM1] gi|254562024|ref|YP_003069119.1| response regulator [Methylobacterium extorquens DM4] gi|163663883|gb|ABY31250.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218523339|gb|ACK83924.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] gi|240009584|gb|ACS40810.1| putative response regulator (CheY-like protein) [Methylobacterium extorquens AM1] gi|254269302|emb|CAX25268.1| putative response regulator (CheY-like protein) [Methylobacterium extorquens DM4] Length = 121 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +ILL +D+D +R FL + L G+ VV+ +G+ D++ E F L+LTDI MP MDG Sbjct: 3 RILLVDDEDTVRGFLKRGLELDGHTVVTAIDGSDGLDRLSEAGGGFDLMLTDIRMPLMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I L+ A PDL ++ +TGFA VL+KPF L DL + V R L Sbjct: 63 IALSLAAKRDYPDLTILLMTGFADQRERARGLDAIVTDVLTKPFSLADLRSTVTRAL 119 >gi|92116951|ref|YP_576680.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gi|91799845|gb|ABE62220.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 853 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 6/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ +NG A + + ++ L+++D+VMPEMDG Sbjct: 735 ILLVEDEEGLRSLNARGLRSRGYSVIEASNGIEALEALDQKNGAVDLVVSDVVMPEMDGP 794 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLTI 120 L R+ +PDLK++F++G+A A D + P+N + L+KPF L L+ +V + + Sbjct: 795 TLLRKMRVRNPDLKIIFVSGYAEEAF--DKSLPENEQFAFLAKPFALSALIAKVKETMAL 852 Query: 121 K 121 Sbjct: 853 S 853 >gi|328952225|ref|YP_004369559.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452549|gb|AEB08378.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1256 Score = 74.7 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL+ ED++ +R + ++L GY V+S NG A P +LLTD+VMP+M Sbjct: 1131 SETILVVEDEEVLRDLIDRSLKLYGYTVLSARNGGDALLLCENHPARIHILLTDVVMPQM 1190 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G +LA R L PDLKV+F++G+ + + KPF L +L+ ++ +L Sbjct: 1191 NGRDLAGRLRTLRPDLKVLFMSGYTDNVIVHHGILEPEISFIQKPFRLTELLEKIREILE 1250 Query: 120 IKN 122 +N Sbjct: 1251 EEN 1253 >gi|58696832|ref|ZP_00372356.1| sensor histidine kinase/response regulator [Wolbachia endosymbiont of Drosophila simulans] gi|58536962|gb|EAL60124.1| sensor histidine kinase/response regulator [Wolbachia endosymbiont of Drosophila simulans] Length = 653 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 N ILL ED+D +R F+ K L + G++V+ + G+ A + + + + L++TD++MPE+ Sbjct: 527 NGIILLIEDEDSVREFISKELKRKGFDVIEASIGSEALEIISKKSQHIDLIITDVIMPEV 586 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + A P++ V+FI+G+A A L D ++ L KPF L +L N+V +L Sbjct: 587 SGPEIVKEALIHRPNINVIFISGYAEDAFLKSDDINIEDFHFLPKPFTLNELGNKVQSVL 646 >gi|23013522|ref|ZP_00053407.1| COG2204: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Magnetospirillum magnetotacticum MS-1] Length = 487 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 69/115 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG+AGYEV + N ++ + V E L++TD+VMP+ G++L Sbjct: 12 ILVADDDRGIRTVLSQALGRAGYEVRTTGNASTLWRWVSEGEGDLVITDVVMPDESGLDL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ P+L+++ ++ + + + L KPF L++LVN V R L+ Sbjct: 72 LPRMKKIRPELRIIVMSAQNTLLTAVKATQRGAFEYLPKPFDLKELVNVVGRALS 126 >gi|262195899|ref|YP_003267108.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079246|gb|ACY15215.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 660 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEM 59 + +LLAED+ +R + LG+ GY V+S +NG A + L+LTD+VMP M Sbjct: 533 ETLLLAEDEAAIRHVTERILGELGYTVLSASNGEQALRMATAHGLDKIDLVLTDVVMPVM 592 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL R EL PD++V+F++G+ A D +A L KPF L +V +L Sbjct: 593 GGTELVERLRELRPDMRVLFLSGYTGTA-GIDRFLSADAAFLQKPFTFDVLTRKVREVL 650 >gi|162453442|ref|YP_001615809.1| two component response regulator [Sorangium cellulosum 'So ce 56'] gi|161164024|emb|CAN95329.1| two component response regulator [Sorangium cellulosum 'So ce 56'] Length = 256 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 66/115 (57%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D++ MR L +L GYEVV +G A + VR++ F+L+++DI MP ++G Sbjct: 16 GKRVLVIDDEEGMRVTLAASLELEGYEVVEARDGIHALELVRQQAFTLVISDIRMPGLNG 75 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +E R + P+L V+ +T FA L ++ A V+ KPF + L V R Sbjct: 76 VETFRELRRIQPELTVVLMTAFALERLIEEAIAEGVYTVIHKPFSMDHLARIVAR 130 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 52/112 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D + ++ L AG + ++G +A V E + + D+VMP+ DG+ Sbjct: 137 VLVVDDIPKVADSIVAVLRDAGLSAHAVHDGRAAVQYVIERGIDVCVLDLVMPDQDGVTT 196 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + L + V+ +TG A + + L KPF R+L++ + R Sbjct: 197 CAQMRGLKKRVTVIAMTGHAVPEMVSAIMSKGGYACLHKPFDARELIHTIAR 248 >gi|14521754|ref|NP_127230.1| chemotaxis response regulator [Pyrococcus abyssi GE5] gi|5458974|emb|CAB50460.1| cheY chemotaxis response regulator [Pyrococcus abyssi GE5] Length = 120 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MR L K L +AG+EVV +NG A +K ++ L+ DIVMPEMDGI Sbjct: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + ++DP+ K++ IT A ++ + KPF + ++ EVNR+L+ Sbjct: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119 >gi|94263414|ref|ZP_01287228.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94264197|ref|ZP_01287993.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455372|gb|EAT05573.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456250|gb|EAT06384.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 520 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL ED++ + K L GY V++ A + R++ LLL+D+VMPE++ Sbjct: 401 ETILLVEDEETILEVTSKILEGLGYRVLAAPTPHQALEMARQQGGGIDLLLSDVVMPELN 460 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA++ E+ PDL+ +F++G+ A ++ + L KPF L DL +VN L Sbjct: 461 GQELAQKMREIQPDLRCLFMSGYTADVISHNGLLGDGVNFLQKPFSLHDLAAKVNATL 518 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL ED +D +++AL K GYE + A + E + L+L+D MP DG Sbjct: 6 KVLLIEDAEDDALLILRALRKGGYETQHQRVESEAGLRQALAAESWDLVLSDYAMPGFDG 65 Query: 62 IELARRATELDPDLKVMFITG 82 ++ + L P+L + I+G Sbjct: 66 LKAVKIVQHLQPELPFILISG 86 >gi|294665318|ref|ZP_06730610.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604911|gb|EFF48270.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 651 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 N++ILL +D D +R + + L AGY+V+ + A +++R E L+++D+ +P M+ Sbjct: 526 NERILLVDDTDVVRMMVSEVLSDAGYQVIEAEDANGALEQLRTEVHIDLVVSDVGLPGMN 585 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L ++FITG+A A + +L KPF L DL+N V ++L Sbjct: 586 GRDMADVARMLRPGLPILFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNTVGQML 643 >gi|85716548|ref|ZP_01047518.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85696549|gb|EAQ34437.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 850 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 6/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ +NG A + + E+ L+++D+VMPEMDG Sbjct: 732 ILLVEDEEGLRSLNARGLRSRGYSVIEASNGIEALEALDEKNGAVDLVVSDVVMPEMDGP 791 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLT 119 L R+ +P+L+++F++G+A A D + P+N + L+KPF L L+ +V +T Sbjct: 792 TLLRKMRVRNPNLRIIFVSGYAEEAF--DKSLPENEQFAFLAKPFALSALIAKVKETIT 848 >gi|332158773|ref|YP_004424052.1| chemotaxis response regulator [Pyrococcus sp. NA2] gi|331034236|gb|AEC52048.1| chemotaxis response regulator [Pyrococcus sp. NA2] Length = 120 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MR L K L +AG+EVV +NG A +K ++ L+ DIVMPEMDGI Sbjct: 3 RILIVDDAAFMRMLLKKILTQAGHEVVGEASNGREAVEKYKQLKPDLVTMDIVMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + ++DP+ K++ IT A ++ + KPF + ++ EVNR+L+ Sbjct: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119 >gi|322421548|ref|YP_004200771.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127935|gb|ADW15495.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 728 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 N+ ILL ED+ +R + L GY V+ + A + RE + L++TD+VMPEM Sbjct: 601 NETILLVEDEPGIRDVTVSLLALQGYRVLPAAKPSEALELAREYRDRIDLVVTDVVMPEM 660 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +L RR L P +K +F++G+ A + + +SKPF + DL +V LL Sbjct: 661 NGRDLVRRLLSLCPGVKCLFMSGYTADVIAHHGVLDEGVNFISKPFSMTDLAAKVRELL 719 >gi|294627016|ref|ZP_06705606.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598678|gb|EFF42825.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 651 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 N++ILL +D D +R + + L AGY+V+ + A +++R E L+++D+ +P M+ Sbjct: 526 NERILLVDDTDVVRMMVSEVLSDAGYQVIEAEDANGALEQLRTEVHIDLVVSDVGLPGMN 585 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L ++FITG+A A + +L KPF L DL+N V ++L Sbjct: 586 GRDMADVARMLRPGLPILFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNTVGQML 643 >gi|192293578|ref|YP_001994183.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] gi|192287327|gb|ACF03708.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] Length = 126 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 12/126 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +IL+A+D++ MR + +A+G G+E V+ +G+ A + + + F LLLTDI MP MDG Sbjct: 3 RILIADDEESMRLLVARAIGMDGHETVTAEDGSEALEILTSQNGKFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 I LA A PDL ++ +TGFA A L+ + V++KPF + D+ V Sbjct: 63 IALALAAARDFPDLTILLMTGFADQRERAFGLDAIVH-----DVVTKPFSVADIRTAVTD 117 Query: 117 LLTIKN 122 LT K Sbjct: 118 ALTAKK 123 >gi|168702431|ref|ZP_02734708.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 142 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + IL+AEDDD +R F+ L +A + V + NG +A D +P F +LLTD+VMP Sbjct: 18 RRAILVAEDDDAVREFVRIVLEQANFRVSTAPNGRAAGDLFEADPLAFDMLLTDVVMPLA 77 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELA R P+L V+F++ F P +L KPF L L+ V L Sbjct: 78 TGVELAARVRAARPELPVLFMSAFPGSPGLAPCPLPPGTVLLEKPFSLVQLIERVRTTL 136 >gi|197123649|ref|YP_002135600.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173498|gb|ACG74471.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 465 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLAEDD +R + AL +AGY+V +C +GA A + EPF L+LTD+ +P +DG+ Sbjct: 2 KLLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRL 117 L RR PD V+ +T +A A + S + A+ + KPF + +L+ + R+ Sbjct: 62 LFRRTRRAQPDAGVVLMTAYAD-ADDAVSVMREGARDYVQKPFEMDELLLRMQRV 115 >gi|27380919|ref|NP_772448.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27354085|dbj|BAC51073.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 861 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY VV NG A + + E+ L+++D+VMPEMDG Sbjct: 742 ILLVEDEEGLRALNARGLRSRGYTVVEAENGVEAMEMLEEQSGAIDLVVSDVVMPEMDGP 801 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + E +PD+K +F++G+A A + L KPF L LV V +T Sbjct: 802 TLLKAMREKNPDIKFIFVSGYAEDAFEKSLPEGQQFDFLPKPFTLSQLVAAVKETMT 858 >gi|114707286|ref|ZP_01440183.1| sensor kinase [Fulvimarina pelagi HTCC2506] gi|114537167|gb|EAU40294.1| sensor kinase [Fulvimarina pelagi HTCC2506] Length = 841 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 6/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL ED+D +R ++AL GY+V ++G A D + E L+++D+VMPEMDG Sbjct: 722 ILLVEDEDYVRAGSVRALKLKGYDVHEADSGLDALDVLEELDGKVDLVVSDVVMPEMDGP 781 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLT 119 L R ++ PD+K +F++G+A A N P+ K LSKPF R+L V ++L+ Sbjct: 782 TLLREMRKVRPDMKFIFVSGYAEDAFA--KNLPEGEKFGFLSKPFTQRELAMTVKQMLS 838 >gi|225630881|ref|YP_002727672.1| sensor histidine kinase/response regulator [Wolbachia sp. wRi] gi|225592862|gb|ACN95881.1| sensor histidine kinase/response regulator [Wolbachia sp. wRi] Length = 827 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 N ILL ED+D +R F+ K L + G++V+ + G+ A + + + + L++TD++MPE+ Sbjct: 701 NGIILLIEDEDSVREFISKELKRKGFDVIEASIGSEALEIISKKSQHIDLIITDVIMPEV 760 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + A P++ V+FI+G+A A L D ++ L KPF L +L N+V +L Sbjct: 761 SGPEIVKEALIHRPNINVIFISGYAEDAFLKSDDINIEDFHFLPKPFTLNELGNKVQSVL 820 >gi|307945649|ref|ZP_07660985.1| PAS domain-containing protein [Roseibium sp. TrichSKD4] gi|307771522|gb|EFO30747.1| PAS domain-containing protein [Roseibium sp. TrichSKD4] Length = 850 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 + ILL ED++ +R F +AL GY V +G A + + E L+++D+VMPEM Sbjct: 730 SASILLVEDEEAVRAFAARALASRGYTVYEAGSGTEALEVMDENDGAVDLVVSDVVMPEM 789 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRL 117 DG L + PDLK++F++G+A A + N P+N + L KPF L+ L +V + Sbjct: 790 DGPSLLVELRKTRPDLKIIFVSGYAEDAF--EENLPENEQFDFLPKPFTLKQLATKVKEV 847 Query: 118 L 118 L Sbjct: 848 L 848 >gi|85859030|ref|YP_461232.1| sigma-54 dependent transcriptional regulator [Syntrophus aciditrophicus SB] gi|85722121|gb|ABC77064.1| sigma-54 dependent transcriptional regulator [Syntrophus aciditrophicus SB] Length = 472 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 NQKIL+AEDDD R L + L GYE+ + +NG A D E+ + L++TD+ MP DG Sbjct: 14 NQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMPNGDG 73 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN-EVNRLLT 119 +EL + +++PD V+ +TG+ V ++ +SKP DLV VNR L+ Sbjct: 74 LELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMR-NDLVTLTVNRALS 131 >gi|148547554|ref|YP_001267656.1| histidine kinase [Pseudomonas putida F1] gi|148511612|gb|ABQ78472.1| histidine kinase [Pseudomonas putida F1] Length = 538 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 7/121 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMP 57 ++ +L+ EDD +R+ L +ALG+ G+ C + A A + ++ +P LL+TD+ +P Sbjct: 418 SRHVLIVEDDPHVRQLLCQALGENGF---PCQSAADANEGLKVLRSAQPVDLLITDVGLP 474 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M+G +LA A L P L V+FITG+A A+ + ++ KPF L+ L V ++ Sbjct: 475 GMNGRQLAEIARNLRPRLPVLFITGYAETAMAREGFLGAGMHLICKPFELQQLQARVTQI 534 Query: 118 L 118 L Sbjct: 535 L 535 >gi|325276406|ref|ZP_08142179.1| histidine kinase [Pseudomonas sp. TJI-51] gi|324098473|gb|EGB96546.1| histidine kinase [Pseudomonas sp. TJI-51] Length = 538 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 ++LL EDD +R L +AL G+ +S N + +R +P LL++D+ +P M+G Sbjct: 419 HRVLLVEDDLHVRELLCQALRDNGFTCLSAANAEEGLEVLRASQPIDLLISDVGLPGMNG 478 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A L P L V+FITG+A A+ + + ++ KPF LR L +V +L Sbjct: 479 RQLAEIARSLRPRLPVLFITGYAETAMAREGFLGCDMHLICKPFELRQLQEQVAVIL 535 >gi|78044512|ref|YP_360675.1| sigma-54 dependent transcriptional regulator/response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996627|gb|ABB15526.1| sigma-54 dependent transcriptional regulator/response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 443 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 62/107 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+++ R LI+ L + GYEV G A ++EE F L + DI MP +DGIE Sbjct: 6 KVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEETFHLAIFDIKMPGIDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L +RA +LD +L+V+ +TG + + L+KP +L +L Sbjct: 66 LLQRARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAEL 112 >gi|14590394|ref|NP_142460.1| chemotaxis protein (cheY) [Pyrococcus horikoshii OT3] gi|3256887|dbj|BAA29570.1| 120aa long hypothetical chemotaxis protein (cheY) [Pyrococcus horikoshii OT3] Length = 120 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR L K L +AG+EVV +NG A +K ++ L+ DIVMPEMDGI Sbjct: 3 RVLVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + ++DP+ K++ IT A ++ + KPF + ++ EVNR+L+ Sbjct: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119 >gi|26990142|ref|NP_745567.1| histidine kinase [Pseudomonas putida KT2440] gi|24985077|gb|AAN69031.1|AE016535_5 response regulator/sensor histidine kinase [Pseudomonas putida KT2440] Length = 538 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 7/121 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMP 57 ++ +L+ EDD +R+ L +ALG+ G+ C + A A + ++ +P LL+TD+ +P Sbjct: 418 SRHVLVVEDDPHVRQLLCQALGENGF---PCQSAADANEGLKVLRSAQPVDLLITDVGLP 474 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M+G +LA A L P L V+FITG+A A+ + + ++ KPF L+ L V + Sbjct: 475 GMNGRQLAEIARSLRPRLPVLFITGYAETAMAREGFLGADMHLICKPFELQQLQARVTHI 534 Query: 118 L 118 L Sbjct: 535 L 535 >gi|75674772|ref|YP_317193.1| response regulator receiver [Nitrobacter winogradskyi Nb-255] gi|74419642|gb|ABA03841.1| response regulator receiver [Nitrobacter winogradskyi Nb-255] Length = 130 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 12/126 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++L+A+D+D MR + +A+ G+E+V+ +GA A D + + F LLLTDI MP MDG Sbjct: 3 RVLIADDEDSMRSLVARAIAMDGHEIVTAADGAEALDILSADAHTFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 I LA A P L ++ +TGFA A LN + V++KPF + D+ V Sbjct: 63 IALALAAARDFPGLIILLMTGFADQRERASGLNAIVH-----DVVTKPFSVADIRAAVAG 117 Query: 117 LLTIKN 122 LT + Sbjct: 118 ALTTQT 123 >gi|159896976|ref|YP_001543223.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890015|gb|ABX03095.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 713 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEM 59 + IL++ED+ +R L++ L GY V+ +G+ A ++ + LL+TD+VMP+M Sbjct: 593 ETILVSEDEPQVRAVLVRMLQGLGYSVLEALHGSEALALLQAQALGTIQLLITDMVMPQM 652 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL++R ELDP LK++FI+G++ +L + +LSKPF L L V ++L Sbjct: 653 GGFELSQRVAELDPQLKILFISGYSEHSLAQHQQLAQQPLLLSKPFSLATLAQTVRKVL 711 >gi|323136256|ref|ZP_08071338.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322398330|gb|EFY00850.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 628 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++ IL+ EDD+ RR ++ + + GY + +G +A D + P +L++TD+ M MD Sbjct: 508 SEVILVVEDDETARRVTVEGMRELGYTAIEAGSGQAALDILETRPDVTLMITDVTMSGMD 567 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+ LA+ A + P L+V+ I+G+ L D K+ +LSKPF L + + Sbjct: 568 GVALAKEALKRRPKLRVLHISGYMPNTLGNDGLLNKDINLLSKPFTLEQIARRI 621 >gi|328542381|ref|YP_004302490.1| Two component, sigma54 specific, transcriptional regulator, Fis family [polymorphum gilvum SL003B-26A1] gi|326412128|gb|ADZ69191.1| Two component, sigma54 specific, transcriptional regulator, Fis family [Polymorphum gilvum SL003B-26A1] Length = 444 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 65/115 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +DDD++R L + L G++V++ + + + + + +L+TDI MP+ DG++ Sbjct: 5 KVLLVDDDDELRDALAQGLELVGHDVIAFDGADGVTEWIGRDFYGVLVTDIKMPKTDGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RRA E+DP L V+ ITG V L ++ L KPF + L + R L Sbjct: 65 LMRRAFEIDPALPVILITGHGDVPLAVEAMRAGAYDFLEKPFAVAGLAAVIERAL 119 >gi|91203987|emb|CAJ71640.1| stongly similar to sigma 54 response regulator [Candidatus Kuenenia stuttgartiensis] Length = 466 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED +MR L+ AL +AGY+V +NG A + +E + L++ D+ M MDG+E+ Sbjct: 10 ILVVEDQKNMRESLVIALKRAGYKVTGVDNGEMAIQQQKEIGYDLIIVDLKMGIMDGLEV 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLTIK 121 E++P +V+ +T F + N A ++ ++KPFHL D+++ + R L K Sbjct: 70 LSNVKEINPSTEVIVMTAFGTI--NSAIQAIRDGAYDYITKPFHLPDMLSVIERALEKK 126 >gi|192292771|ref|YP_001993376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286520|gb|ACF02901.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 880 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMDG 61 ILL ED++ +R + L GY+V+ +NG A +D V E L+++D+VMPEMDG Sbjct: 762 ILLVEDEEGLRSLNARGLRSRGYQVIEASNGVEALEEFDAVSGE-VDLVVSDVVMPEMDG 820 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + +PDLK++F++G+A A + + P+N + L+KPF L LV +V + Sbjct: 821 PSLLKAMRGRNPDLKIIFVSGYAEDAF--EKSLPENEQFAFLAKPFALSALVAKVKETM 877 >gi|325924817|ref|ZP_08186252.1| PAS domain S-box [Xanthomonas perforans 91-118] gi|325544747|gb|EGD16095.1| PAS domain S-box [Xanthomonas perforans 91-118] Length = 651 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 N++ILL +D D +R + + L AGY+V+ + A + +R E L+++D+ +P M+ Sbjct: 526 NERILLVDDTDVVRMMVSEVLSDAGYQVIEAEDANGALEHLRTEAHIDLVVSDVGLPGMN 585 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L ++FITG+A A + +L KPF L DL+N V ++L Sbjct: 586 GRDMADVARTLRPGLPILFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNTVVQML 643 >gi|258591511|emb|CBE67812.1| Response regulator receiver protein [NC10 bacterium 'Dutch sediment'] Length = 397 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD DMRR L+ L GY+VV +GA A+D ++ EPFS ++TD +MP +DG+E Sbjct: 2 RILIVDDDVDMRRLLLHTLQSWGYDVVQAIDGAQAWDLLQNEPFSFVITDWIMPNLDGLE 61 Query: 64 LARR 67 L RR Sbjct: 62 LCRR 65 >gi|85374374|ref|YP_458436.1| two-component response regulator [Erythrobacter litoralis HTCC2594] gi|84787457|gb|ABC63639.1| two-component response regulator [Erythrobacter litoralis HTCC2594] Length = 814 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 ++LL ED+D +R +AL +AG+ V SC +G + + F L+++D+VMP MDG Sbjct: 695 RLLLVEDEDMVRTVAERALTRAGHTVTSCADGEMGFAAIANGGAFDLVVSDVVMPGMDGP 754 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +AR ++ PD+ ++F++G+A L D + N L KPF ++ + +V +L K Sbjct: 755 AMARAIRKVAPDIPILFMSGYAEEQLRKDIDI-HNMHFLPKPFSVQQISQKVAEVLGAK 812 >gi|86747958|ref|YP_484454.1| response regulator receiver domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86570986|gb|ABD05543.1| response regulator receiver domain protein [Rhodopseudomonas palustris HaA2] Length = 125 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 2/111 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL+A+D++ MR + +A+G G+E V+ +G+ A + + E F LLLTDI MP MDG Sbjct: 3 RILIADDEESMRLLVARAIGMDGHETVTAQDGSEALEILIESAGRFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 I LA A PDL ++ +TGFA V++KPF + D+ N Sbjct: 63 IALALAAARDFPDLTILLMTGFADQRERASGLDALIHDVITKPFSVADIRN 113 >gi|325921184|ref|ZP_08183050.1| response regulator receiver protein [Xanthomonas gardneri ATCC 19865] gi|325548326|gb|EGD19314.1| response regulator receiver protein [Xanthomonas gardneri ATCC 19865] Length = 113 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 1/113 (0%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIELA 65 + EDDD +R LG GY+VV+ + A +++ PF LLL+DI +P M+G +LA Sbjct: 1 MVEDDDAIRAMTEDILGDEGYQVVATADAEHALEQLNTSRPFDLLLSDICLPGMNGRDLA 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A L P L ++F+TG+A ++L+KPF LRDL+ V L Sbjct: 61 DKARFLYPALPIVFMTGYAGAIAKRADFLDTGMRLLTKPFSLRDLLGIVQTTL 113 >gi|301059927|ref|ZP_07200811.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300445982|gb|EFK09863.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 386 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 40/106 (37%), Positives = 62/106 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL +D++ +R L AL GYEV++ +G A R++ S++LTDI MP MD Sbjct: 1 MTEKILLVDDEEGIRTVLGIALADYGYEVLTAASGGEAVSVFRKQKPSIVLTDIKMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 GI++ R+ E PD +V+ ITG + L +S ++KP + Sbjct: 61 GIQVLRKIKEESPDTEVIMITGHGDLELAIESLKCDATDFITKPIN 106 >gi|90423035|ref|YP_531405.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105049|gb|ABD87086.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 853 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ NG A D + + L+++D+VMPEMDG Sbjct: 737 ILLVEDEEGLRSLNARGLRSRGYSVIEAGNGLEAIDAIEAQHGAIDLVVSDVVMPEMDGP 796 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + +PDLK++F++G+A A + + P+N + L KPF L LV V + Sbjct: 797 TLLKEMRTRNPDLKIIFVSGYAEDAF--EKSLPENQQFAFLPKPFTLSQLVAAVKETM 852 >gi|260770092|ref|ZP_05879025.1| flagellar regulatory protein C [Vibrio furnissii CIP 102972] gi|260615430|gb|EEX40616.1| flagellar regulatory protein C [Vibrio furnissii CIP 102972] gi|315182609|gb|ADT89522.1| sigma-54 dependent transcriptional regulator/response regulator [Vibrio furnissii NCTC 11218] Length = 210 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 63/117 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LLAEDD +R L++AL + V +C+N A D ++PF L L D+VM M Sbjct: 1 MTLQLLLAEDDPQLREVLVEALTLESFAVTACDNAEDALDIAAKQPFDLALFDVVMGGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI+ L P++ ++ T FA V + D+ + L+KPF+L L + R+ Sbjct: 61 GIDALTSLRRLQPNIGIIITTAFATVDIAVDAMKKGADEFLTKPFNLAALSVTLKRV 117 >gi|188581879|ref|YP_001925324.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179345377|gb|ACB80789.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 906 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R +AL GY V+ +G A + E + ++++D+VMPEMDG Sbjct: 789 VLLVEDEDPVRAVNSRALSARGYTVLEAASGIEALRLIEEHADGIDVVVSDVVMPEMDGP 848 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + PDLKV+F++G+A A + + L KPF L+ LV V R + Sbjct: 849 TLLRELRKHLPDLKVIFVSGYAEDAFRKNLPEGETFNFLPKPFSLKQLVETVKRTM 904 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040127|gb|ACT56923.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61 +LL ED+D +RR + L GY V +G A KV E+ ++++D+VMPEMDG Sbjct: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDAL-KVMEKLQGRVDIVISDVVMPEMDG 742 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + P LK +FI+G+A A + N PK+AK LSKPF L+ L V+ LL Sbjct: 743 PTLLRELRKTYPSLKFIFISGYAEDAFS--KNLPKDAKFSFLSKPFSLKQLATSVHELL 799 >gi|254504034|ref|ZP_05116185.1| hypothetical protein SADFL11_4073 [Labrenzia alexandrii DFL-11] gi|222440105|gb|EEE46784.1| hypothetical protein SADFL11_4073 [Labrenzia alexandrii DFL-11] Length = 866 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 ILL ED++ +R F +AL GY V G A + + E L+++D+VMPEMDG Sbjct: 748 SILLVEDEEAVRAFAARALASRGYTVYEAGTGMEALEVMEETGGEVDLVVSDVVMPEMDG 807 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + PDLK++F++G+A A + N P N K L KPF L+ L V +L Sbjct: 808 PSLLVELRKTRPDLKIIFVSGYAEDAF--EENLPANEKFFFLPKPFTLKQLATTVKDVL 864 >gi|218512641|ref|ZP_03509481.1| putative two-component sensor histidine kinase protein [Rhizobium etli 8C-3] Length = 150 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +N IL+ EDD+ +R ++L + GY V+ +G A + E P L+ TDIVMP+M Sbjct: 21 VNDTILVVEDDEHVRTMTAESLHELGYTVLQAGSGMEALLLLEENPDVDLIFTDIVMPQM 80 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA E P +++++ TG+ A+ + +L+KPF L L +++ LL Sbjct: 81 SGRQLADVVQEKWPTIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELL 139 >gi|222081275|ref|YP_002540638.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221725954|gb|ACM29043.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 625 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 ++IL+ EDD +RR + L AGY V+ NGA A +E P +LL TD+VMP M Sbjct: 508 ERILVVEDDARVRRVAVSRLLDAGYSVIEATNGAEALAAFQENPDIALLFTDVVMPGGMA 567 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA + L P++KV+F +G+A + A + L KP+ R+L + LL Sbjct: 568 GDELAHKVRALRPEIKVLFTSGYAEPTIAGRELA-EAGSWLKKPYTARELAIRLRELL 624 >gi|86357174|ref|YP_469066.1| putative two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86281276|gb|ABC90339.1| putative two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 548 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +N IL+ EDD+ +R ++L + GY V+ +G A + E P L+ TDIVMP+M Sbjct: 419 VNDTILVVEDDEHVRTMTAESLHELGYSVLQAASGVEALLLLEENPDVDLIFTDIVMPQM 478 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA E P +++++ TG+ A+ + +L+KPF L L +++ LL Sbjct: 479 SGRQLADAVQEKWPAIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELLN 538 Query: 120 I 120 + Sbjct: 539 V 539 >gi|269958873|ref|YP_003328662.1| putative histidine kinase sensor protein [Anaplasma centrale str. Israel] gi|269848704|gb|ACZ49348.1| putative histidine kinase sensor protein [Anaplasma centrale str. Israel] Length = 827 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+D +R F KAL K G+ V+ N+G A + + ++++D+VMP G E Sbjct: 709 VLLIEDEDPVRAFTSKALSKRGFRVIDTNSGKEAIEAAKTTHIDIVISDVVMPGASGPET 768 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 ++ P+ +VMF++G+A + N + LSKPF L+ L+ +V+ L Sbjct: 769 VAEILKIQPNARVMFVSGYAEEIFHQHKNINLDEMFFLSKPFTLKQLLQKVDEAL 823 >gi|149923317|ref|ZP_01911725.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149815797|gb|EDM75319.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 639 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 42/110 (38%), Positives = 59/110 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++ILL ED D +RR + L AGYEV +G A + E+ L+LTD+VMP G Sbjct: 520 DERILLVEDHDLVRRIAEELLRGAGYEVSVVEDGEQASATLSEQRVDLVLTDVVMPRRSG 579 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 IELAR P L ++ +TG+ D A +LSKPF +L+ Sbjct: 580 IELARELQVTQPGLPLILMTGYTTERAQLDELASAGVGLLSKPFCREELL 629 >gi|298292387|ref|YP_003694326.1| integral membrane sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928898|gb|ADH89707.1| integral membrane sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 775 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +LL EDD +R L + GY V+ ++GA+A ++ P +LLTD+VMP M+G + Sbjct: 661 VLLVEDDAQVRAMSRTMLDELGYRVIEADSGAAALHELEAHPEIRVLLTDVVMPTMNGRQ 720 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A L PDLKV+F TG+ A+ + +L KPF L L ++ +L Sbjct: 721 LANAALALRPDLKVIFTTGYTRNAIIHNGVLDHGVHLLIKPFTLGGLAAKLKEVL 775 >gi|188582225|ref|YP_001925670.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|179345723|gb|ACB81135.1| response regulator receiver protein [Methylobacterium populi BJ001] Length = 121 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +ILL +D+D +R FL + L G+ VV+ +G+ D++ E F L+LTDI MP MDG Sbjct: 3 RILLVDDEDTVRGFLKRGLELDGHTVVTAIDGSDGLDRLSEAGGGFDLMLTDIRMPLMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I L+ A P+L ++ +TGFA VL+KPF L DL + V R L Sbjct: 63 IALSLAAKRDYPELTILLMTGFADQRERARGLDAIVTDVLTKPFSLADLRSTVTRAL 119 >gi|148657168|ref|YP_001277373.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148569278|gb|ABQ91423.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 641 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ ILL EDD +R + L GY V+ +G A E P LLL+D V+P M Sbjct: 524 SETILLVEDDPAVRTLTARVLRTHGYTVLEAGDGHEALTLAGERPIHLLLSDHVIPHMSS 583 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA T L P +KV+F++G+ V PD A + A VL KPF L+ V +L Sbjct: 584 ESLAHYLTALIPQMKVLFMSGY-VVEPRPDVQALQEATVLQKPFTPTALLQRVRAVL 639 >gi|332186576|ref|ZP_08388320.1| sensory box protein [Sphingomonas sp. S17] gi|332013559|gb|EGI55620.1| sensory box protein [Sphingomonas sp. S17] Length = 841 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP----FSLLLTDIVMP 57 ++ IL+ EDD D+R + +AL + GY+V+ ++GASA + E P +LL +D+V+P Sbjct: 719 SETILVVEDDADVRAYSTEALRELGYDVLEADDGASAL-ALLEAPEASRIALLFSDVVLP 777 Query: 58 E-MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 M G +LA A L PDLKV+F TG+A + +++KPF DL + Sbjct: 778 GGMTGADLASAARALHPDLKVLFTTGYARDVIVHGGRLDAGVALITKPFDFADLAARIRA 837 Query: 117 LL 118 +L Sbjct: 838 IL 839 >gi|148553437|ref|YP_001261019.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148498627|gb|ABQ66881.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 803 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 ILL ED+ +R +AL + GY+V++ NG + + EEP L+++D+VMP MDG Sbjct: 682 ILLVEDEAMVRAVAERALARQGYKVLTATNGEEGLEILEAGEEPIDLVISDVVMPTMDGP 741 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +AR A E PDL ++F++G+A L + N L KPF ++ + Sbjct: 742 SMARAAREKRPDLPIIFMSGYAEEQLRRSIDL-DNIGFLPKPFSVQQI 788 >gi|89054475|ref|YP_509926.1| PAS/PAC sensor hybrid histidine kinase [Jannaschia sp. CCS1] gi|88864024|gb|ABD54901.1| PAS/PAC sensor hybrid histidine kinase [Jannaschia sp. CCS1] Length = 752 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ G A D + E L +TD++MP +DG Sbjct: 636 VLLVEDEAPVRAFASRALRLRGYTVLEAGCGEEALDTLADPELEIDLFVTDVIMPGLDGP 695 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+A E PD KV+F++G+A A+ S + + L KPF L DL V + L Sbjct: 696 SWVRKALEERPDTKVVFVSGYAEDAMEEGSIGVEGSVFLPKPFSLTDLTETVRQQL 751 >gi|223937232|ref|ZP_03629138.1| histidine kinase [bacterium Ellin514] gi|223894017|gb|EEF60472.1| histidine kinase [bacterium Ellin514] Length = 557 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 5/108 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS---LLLTDIVMPE 58 + ILL EDD R+ + L + GY +++ GA A ++ E+ + LLLTD+VMPE Sbjct: 432 TETILLVEDDPTTRQLVGILLRRYGYNIIASATGAQAL-QLSEQVLAGVQLLLTDVVMPE 490 Query: 59 -MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +DG+EL+++ +PDLKV+F++G++A L + P+ ++ KPF Sbjct: 491 GIDGVELSKQLQGRNPDLKVVFMSGYSAEVLTKNITLPERLMLVQKPF 538 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKAL---GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +ILL ED D R + + L +EV + +A + + E+ + L D+ +P+ Sbjct: 47 RILLVEDQPDFGRLIREYLLDSDSPRFEVRHVESLGAAMEALTEQLYDAALLDLTLPDSI 106 Query: 61 GIELARRATELDPDLKVMFITGF 83 G++ ++ +L+P+L V+ +TG Sbjct: 107 GLQSFQKVFQLNPNLPVVILTGI 129 >gi|115523576|ref|YP_780487.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517523|gb|ABJ05507.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 874 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ NG A + + ++ L+++D+VMPEMDG Sbjct: 756 ILLVEDEEGLRSLNARGLRSRGYTVIEAGNGIEALEALEQQTGAIDLVVSDVVMPEMDGP 815 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + +PDLK++F++G+A A + + P+N + L+KPF L LV V + Sbjct: 816 TLLKTMRGTNPDLKIIFVSGYAEDAF--EKSLPENQQFAFLAKPFTLSQLVAAVKETI 871 >gi|315122102|ref|YP_004062591.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495504|gb|ADR52103.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 794 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61 +LL ED+D +RR + L GY V +G A KV EE ++++D+VMPEMDG Sbjct: 675 VLLVEDEDSVRRGSKRMLETRGYTVHEACSGTDAL-KVMEELQGKVDIVVSDVVMPEMDG 733 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + P+LK +FI+G+A A + N K+AK LSKPF L+ L V+ LL Sbjct: 734 PTLLRELRKTYPNLKFIFISGYAEDAFS--KNLVKDAKFSFLSKPFSLKQLATSVHELL 790 >gi|126729800|ref|ZP_01745613.1| sensory box sensor histidine kianse/response regulator [Sagittula stellata E-37] gi|126709919|gb|EBA08972.1| sensory box sensor histidine kianse/response regulator [Sagittula stellata E-37] Length = 765 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ A + ++ + + +TD+VMP MDG Sbjct: 649 VLLVEDEAPVRAFAARALRLRGYTVIEAETAEDALRTLDDDKLAVDIFVTDVVMPGMDGP 708 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+A E PD +V+F++G+A A S A N+ L KPF L +L V+ L Sbjct: 709 TWVRKARESRPDTRVVFVSGYAEDAFGEGSEAIPNSVFLPKPFSLSELTETVHEQL 764 >gi|108758219|ref|YP_632059.1| sensory box sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108462099|gb|ABF87284.1| sensory box sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 862 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD ++R ++ L + GY V+ ++G SA ++ P LL TD+VMP + Sbjct: 597 ETLLVVEDDAEVRATAVEMLTELGYRVLKASDGQSALAVIQSGIPIDLLFTDVVMPGPVR 656 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELAR+A L PDL+V+F +G+ A+ ++LSKP+ DL ++ +LL Sbjct: 657 SPELARQAKALSPDLEVLFTSGYTENAIVHGGRLDPGVQLLSKPYRREDLARKIRQLLAA 716 Query: 121 K 121 + Sbjct: 717 R 717 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 6/110 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+++ + + L G+ V + A +R + F LL TD+ +P GIE Sbjct: 747 RILLVEDDENILLPVCELLETMGHTVTAVACAEEATPLLRTQEFDLLFTDVSLPGKSGIE 806 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAP---KNAKVLSKPFHLRDL 110 LA +A + P L+V+ +G A N D A +A +L KP+ L + Sbjct: 807 LAHQAVQDVPGLRVIIASGHGA---NVDIGAKGPLDSAVILPKPYGLSQI 853 >gi|94272923|ref|ZP_01292204.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93449971|gb|EAT01381.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 266 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59 + IL+ ED++ +R+ ++K L + GY+V +G A + + L+LTD+VMP M Sbjct: 144 GEHILVVEDEESLRKLIVKTLSRLGYKVSFAASGGEALLLIENKGLKPDLVLTDVVMPNM 203 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA + PDLKV++++G+ A+ + KPF + DL +V + Sbjct: 204 SGKELANHLQRVQPDLKVLYMSGYTDNAIAHHGVLEPGTAFIHKPFTISDLAEKVQAVF 262 >gi|326387208|ref|ZP_08208818.1| multi-sensor hybrid histidine kinase [Novosphingobium nitrogenifigens DSM 19370] gi|326208389|gb|EGD59196.1| multi-sensor hybrid histidine kinase [Novosphingobium nitrogenifigens DSM 19370] Length = 810 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 6/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEP--FSLLLTDIVMPE 58 ++LL ED+D +R +AL + GYEV + ++G ++ + EE F L+++D+VMP Sbjct: 686 RVLLVEDEDTVRAVAERALVRQGYEVTTASDGEEGFETLVRTYEEGGGFDLVVSDVVMPT 745 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG +AR P+L +F++G+A L + + P N L KPF ++ +V+ V +L Sbjct: 746 MDGPAMAREIRAHRPELPFLFMSGYAEETLRREIDIP-NMHFLPKPFSVQQIVSAVEDVL 804 >gi|254472270|ref|ZP_05085670.1| two component response regulator [Pseudovibrio sp. JE062] gi|211958553|gb|EEA93753.1| two component response regulator [Pseudovibrio sp. JE062] Length = 132 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL EDDD +R F+ +AL G++V + +GA A + ++ F LLL+DI MPEMDGI Sbjct: 4 ILLTEDDDAVRAFVKRALELDGHKVTAVEDGAEAALVLLQQQGKFDLLLSDIRMPEMDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA +++ P L ++ +TG+A + VL+KPF L ++ V L Sbjct: 64 ELAMQSSARYPGLPILLMTGYADQRERSEEVGKCVKDVLTKPFSLVEVRKAVTTAL 119 >gi|144900463|emb|CAM77327.1| Sensor histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 796 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 ILL ED+D +R F +AL GY+V+ +G A D +R E+ +L++D+VMP MDG+ Sbjct: 679 ILLVEDEDAVRMFGTRALKNKGYKVIEARSGEQALDVLRAEDGIDVLISDVVMPGMDGVT 738 Query: 64 LARRATELDPDLKVMFITGF----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ P +K++ I+G+ A ++PD+ L KPF L+ L V +++ Sbjct: 739 LAKLVRMERPHIKLILISGYSEDVARNGIDPDA----GIHFLPKPFSLKQLAEAVKQVM 793 >gi|190891221|ref|YP_001977763.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696500|gb|ACE90585.1| putative two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 548 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +N IL+ EDD+ +R ++L + GY V+ +G A + E P L+ TDIVMP+M Sbjct: 419 VNDTILVVEDDEHVRTMTAESLHELGYTVLQAGSGMEALLLLEENPDVDLIFTDIVMPQM 478 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA E P +++++ TG+ A+ + +L+KPF L L +++ LL Sbjct: 479 SGRQLADAVQEKWPTIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELLN 538 Query: 120 I 120 + Sbjct: 539 M 539 >gi|313498625|gb|ADR59991.1| Histidine kinase [Pseudomonas putida BIRD-1] Length = 538 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 ++++L+ EDD +R+ L +AL + G+ S + + +R +P LL+TD+ +P M+ Sbjct: 418 SRQVLIVEDDPHVRQLLCQALCENGFPCQSAADASEGLKVLRSAQPVDLLITDVGLPGMN 477 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A L P L V+FITG+A A+ + ++ KPF L+ L V ++L Sbjct: 478 GRQLAEIARSLRPRLPVLFITGYAETAMAREGFLGAGMHLICKPFELQQLQARVTQIL 535 >gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] Length = 1389 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L AG+ VV+ N+G +A D +R EPF L+++D++MP +DG+E Sbjct: 632 RVLVADDNADMRGYLTRLLRGAGHTVVAVNDGRAALDALRAEPFDLVVSDVMMPGLDGLE 691 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + V+ ++ A + L KPF DL+ V Sbjct: 692 LVAALRADRRTASVPVLLLSARAGEEASVQGLEAGADDYLVKPFAAADLLARV 744 >gi|325914836|ref|ZP_08177171.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] gi|325538927|gb|EGD10588.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] Length = 653 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 N +ILL +D D +R + + L AGY+V+ + +++R + L+++D+ +P M+ Sbjct: 528 NARILLVDDTDVVRMMVSEVLSDAGYQVIEAEDAVGGLEQLRTDVQIDLVVSDVGLPGMN 587 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L P L ++FITG+A A+ +L KPF L DL+N V ++L Sbjct: 588 GRDMADVARTLRPGLPILFITGYAENAVTRQEFLADGMALLPKPFSLNDLLNTVGQML 645 >gi|110634091|ref|YP_674299.1| multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA [Mesorhizobium sp. BNC1] gi|110285075|gb|ABG63134.1| cell cycle control histidine kinase CckA [Chelativorans sp. BNC1] Length = 866 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 + ++LL ED+D +R ++AL GYEV ++G A + E ++++D+VMPEM Sbjct: 744 SARVLLVEDEDAVRMGSVRALTSRGYEVHEASSGTEALEIFHTLEGKVDIVVSDVVMPEM 803 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRL 117 DG L R ++ P +K +F++G+A A N P++A L KPF L+ L V + Sbjct: 804 DGPTLLRELRKVQPGIKFIFVSGYAEDAFA--KNLPEDAIFGFLPKPFSLKQLATTVKEM 861 Query: 118 L 118 L Sbjct: 862 L 862 >gi|327403396|ref|YP_004344234.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327318904|gb|AEA43396.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 230 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ILLAEDDD++ + L L GY+V NG AY+K + F + D++MPEMDG Sbjct: 4 QRSILLAEDDDNLGQLLQTFLKAKGYQVELARNGKHAYEKYTDGHFDFCIFDVMMPEMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ +DP + ++F+T A + ++KPF + +L+ + +L Sbjct: 64 FTLAKEVRLIDPKVPILFLTAKAMKEDKLEGFESGADDYMTKPFTMEELLARIEAIL 120 >gi|221640806|ref|YP_002527068.1| sensor protein [Rhodobacter sphaeroides KD131] gi|221161587|gb|ACM02567.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 949 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD +R L++ L +AG V +G +A +++ P LLL D+ +P+M G++L Sbjct: 828 VLVCEDDVIIRMNLVEGLKEAGCRVSQAGSGGAALSVLQQGPADLLLVDLGLPDMSGVDL 887 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR A L P+L ++F TG + V PD VL+KPF L++ V RL+ Sbjct: 888 ARAARTLHPELPILFATGDSRV---PDEEFRPRVAVLAKPFGDEALLDGVARLV 938 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 + ILL EDD+ +R L GY V+ + A V LL TD+VMP ++ Sbjct: 693 ETILLVEDDEQVRSTAAGLLQDLGYSVLQAKDADRALTIVESGARIDLLFTDVVMPGKLT 752 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + L P L V+F +G+ ++ +LSKP+ L ++ +L Sbjct: 753 SRQLAEKTRGLRPGLPVLFTSGYTQNSIVHGGRLDSGVHLLSKPYTQEALARKIREVL 810 >gi|85713583|ref|ZP_01044573.1| response regulator receiver [Nitrobacter sp. Nb-311A] gi|85699487|gb|EAQ37354.1| response regulator receiver [Nitrobacter sp. Nb-311A] Length = 130 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 12/123 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 ++L+A+D+D MR + +A+ G+E V+ +GA A D + + F LLLTDI MP MDG Sbjct: 3 RVLIADDEDSMRSLVARAIAMDGHETVTAADGAEALDILTADTRAFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 I LA A PDL ++ +TGFA A LN + V++KPF + + + V Sbjct: 63 IALALSAARDFPDLIILLMTGFADQRERASGLNAIVH-----DVVTKPFSVAGIRSAVAG 117 Query: 117 LLT 119 LT Sbjct: 118 ALT 120 >gi|167033383|ref|YP_001668614.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859871|gb|ABY98278.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 551 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPE-MD 60 Q+++L ED MR L++ L + G+EV + + G A + + P LL+TD+ +P +D Sbjct: 427 QRVMLVEDQSAMRLVLVEVLTELGHEVQAFDVGRPALEALHAGPLPDLLITDVGLPGGID 486 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +LA + V+ ITG+ A L P + ++LSKPF L+ + VNRLL I Sbjct: 487 GYQLAEAFQGFQANAPVLLITGYDAAELPPSTRPDSRTELLSKPFDLQSFCSRVNRLLGI 546 >gi|83309719|ref|YP_419983.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944560|dbj|BAE49424.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 796 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 ILL ED+D +R F +AL GY V+ +G A + + EP +L++D+VMP MDG+ Sbjct: 679 ILLVEDEDAVRLFGARALRNKGYTVIEARSGEQAMEVLNGGEPIQVLISDVVMPGMDGVT 738 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR P +KV+ I+G++ + L KPF LR L V +++ Sbjct: 739 LARFVRMERPAIKVILISGYSEDVARDGIDPDAGIHFLPKPFSLRQLAGAVKQVM 793 >gi|315498391|ref|YP_004087195.1| pas/pac sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] gi|315416403|gb|ADU13044.1| PAS/PAC sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] Length = 1080 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 IL+ +D+ +RRF AL + GY V+ ++ A A + P LL TDIVMPE++G + Sbjct: 963 ILVVDDEAVVRRFSCDALSELGYRVLEADSAAEALRLLDVHPEIRLLFTDIVMPEVNGRK 1022 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 LA A PDLKV+F +G+ A+ + +++ KPF + +L + +L K Sbjct: 1023 LADAAQRARPDLKVLFTSGYTRNAVVHNGVVDAGVELIGKPFSIEELAARLREMLDRK 1080 >gi|298292228|ref|YP_003694167.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928739|gb|ADH89548.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 839 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 6/115 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 +LL ED++ +R F +AL GY+V+ +G A + + L+L+D+VMPEMDG Sbjct: 720 LLLVEDEEAVRAFAARALASRGYQVLEAGSGVEALEVMETHAGEVDLVLSDVVMPEMDGP 779 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVN 115 L + PD+KV+F++G+A A N P+ A L KPF L+ L+ V Sbjct: 780 TLLKELRGTHPDIKVIFMSGYAEEAFA--KNLPEGADFGFLPKPFTLKQLIEAVK 832 >gi|297569508|ref|YP_003690852.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296925423|gb|ADH86233.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 316 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 68/119 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +DD + + L+ A+ G+E + +G +A K++ +SL++TD+ MP MDG+ Sbjct: 17 KILAVDDDPQVLQLLVTAVESFGFECETAGDGVAALKKLQTGNYSLVITDLTMPRMDGMT 76 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L R+A L P L ++ +TG+A D ++KPF++ +L +++R L +N Sbjct: 77 LLRKAKNLYPRLDIIVVTGYAEKFSYTDVIKAGACDFIAKPFNIDELEAKLHRALREQN 135 >gi|170740438|ref|YP_001769093.1| response regulator receiver protein [Methylobacterium sp. 4-46] gi|168194712|gb|ACA16659.1| response regulator receiver protein [Methylobacterium sp. 4-46] Length = 127 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL +D++ +R FL + L G+ VV+ +G+ D++ E F L+LTDI MP MDGI Sbjct: 4 ILLVDDEESIRGFLKRGLEMDGHSVVTAVDGSDGLDRLSEAEGAFDLMLTDIRMPLMDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA A P L ++ +TGFA + VL+KPF L D+ V R LT Sbjct: 64 ALALAAKRDYPQLTILLMTGFADQRERARGLDAIVSDVLTKPFTLADMRATVRRALT 120 >gi|325927393|ref|ZP_08188641.1| response regulator receiver protein [Xanthomonas perforans 91-118] gi|325542214|gb|EGD13708.1| response regulator receiver protein [Xanthomonas perforans 91-118] Length = 113 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 1/113 (0%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIELA 65 + EDDD +R LG GY VV+ + A ++ R PF LLL+DI +P M+G +LA Sbjct: 1 MVEDDDAIREMAADILGDEGYHVVASADAEHALTQLTRACPFDLLLSDICLPGMNGRDLA 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A L P + ++F+TG+A ++L+KPF LRDL+ V L Sbjct: 61 DQARMLYPAMPIVFMTGYAGEIAKRADFLDTGMRLLTKPFSLRDLLGIVQTAL 113 >gi|182677361|ref|YP_001831507.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633244|gb|ACB94018.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 1013 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 4/115 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 ILL +DD+ +R L GY V+ +G++A +++ E P LLL D MP M+G+E Sbjct: 879 ILLVDDDNAVREVAANILTDLGYAVIEAGSGSAALERLEEMPQIDLLLVDFAMPGMNGVE 938 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR E P+L ++F+TG+A +A + +++ KPF + L +V+ +L Sbjct: 939 LARVVRERLPNLPILFVTGYADLA---EIKNVGEDRIVQKPFERQGLAAKVSYVL 990 >gi|312960837|ref|ZP_07775342.1| response regulator [Pseudomonas fluorescens WH6] gi|311284495|gb|EFQ63071.1| response regulator [Pseudomonas fluorescens WH6] Length = 125 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ EDD + L + L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDDQSIMFVLGEYLAGLGYRVLKAINGEQAFEILATKPHLDLMVTDYRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A +L P+LKV+FI+G+ L+ +S +NA +L KPF L L + RLL Sbjct: 69 QIAEPALKLRPELKVIFISGYPQEILDCNSPITRNAPILGKPFDLDTLQEHIQRLLA 125 >gi|149188281|ref|ZP_01866575.1| sigma-54 dependent transcriptional regulator/response regulator [Vibrio shilonii AK1] gi|148837870|gb|EDL54813.1| sigma-54 dependent transcriptional regulator/response regulator [Vibrio shilonii AK1] Length = 210 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 63/117 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LLAEDD D+R L +AL G+EV + +N A D +E+ F L L D+VM + Sbjct: 1 MKLQLLLAEDDTDLREVLEEALSLEGFEVTAVDNAEDALDLAKEKTFDLALFDVVMGGIT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI+ P++ V+ T FA V L D+ + L+KPF+L L + R+ Sbjct: 61 GIDALTTLRRFQPNIGVIVTTAFATVDLAVDAMKKGADEFLTKPFNLSALSVTLKRV 117 >gi|148256774|ref|YP_001241359.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1] gi|146408947|gb|ABQ37453.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1] Length = 892 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ +NG A + + E L+++D+VMPEMDG Sbjct: 774 ILLVEDEEGLRALNARGLRSRGYSVIEASNGIEAMEALEECNGALDLVVSDVVMPEMDGP 833 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + E +PD+K++F++G+A A + + P+N + L KPF L LV V + Sbjct: 834 TLLKVMREKNPDIKIIFVSGYAEDAF--EKSLPENQQFAFLPKPFTLSQLVAAVKETM 889 >gi|114327890|ref|YP_745047.1| nitrogen assimilation regulatory protein, NtrC [Granulibacter bethesdensis CGDNIH1] gi|114316064|gb|ABI62124.1| nitrogen assimilation regulatory protein, NtrC [Granulibacter bethesdensis CGDNIH1] Length = 501 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 70/114 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG++GY+V S + ++ + V + L++TD+VMP+ +G++L Sbjct: 11 ILIADDDRSIRTVLTQALGRSGYQVRSTSTASTLWRWVEDGEGDLVITDVVMPDENGLDL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL+V+ ++ + ++ + + L KPF L++L++ V R L Sbjct: 71 IPRIKRIRPDLRVVVMSAQSTLSTAVKATQQGAFEYLPKPFDLKELLSVVGRAL 124 >gi|104782255|ref|YP_608753.1| response regulator [Pseudomonas entomophila L48] gi|95111242|emb|CAK15962.1| putative response regulator [Pseudomonas entomophila L48] Length = 125 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ +R L L GY V+ +G A++ + +P L++TD +P + G+ Sbjct: 9 VLVVEDEPAIRMILRDYLAGEGYHVLVAEDGEQAFEILASKPHLDLMVTDFRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+A A L PDLKV+FI+G+ A L S + A +L+KPF L L E+ LL Sbjct: 69 EIAEPAVRLRPDLKVIFISGYPAEILESGSPIARRAPILAKPFDLDTLREEIQGLL 124 >gi|326318970|ref|YP_004236642.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375806|gb|ADX48075.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 841 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +L+ ED+ +R+F ++AL + GY V+ + A+A + P LL TD+VMP+++G + Sbjct: 715 VLVVEDEAAVRQFSVEALRELGYRVLEADGAAAALKLIDAHPEIDLLFTDVVMPDVNGRK 774 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A P LKV+F TG+ A+ + +L KP+ L DL V L Sbjct: 775 LAEEALRRRPGLKVLFTTGYTRNAVVHNGVLDAGVHLLGKPYTLEDLAQRVREAL 829 >gi|327189798|gb|EGE56939.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 548 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +N IL+ EDD+ +R ++L + GY V+ +G A + E P L+ TDIVMP+M Sbjct: 419 VNDTILVVEDDEHVRTMTAESLHELGYTVLQAGSGMEALLLLEENPDVDLIFTDIVMPQM 478 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA E P +++++ TG+ A+ + +L+KPF L L +++ LL Sbjct: 479 SGRQLADVVQEKWPTIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELLN 538 Query: 120 I 120 + Sbjct: 539 M 539 >gi|75674313|ref|YP_316734.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74419183|gb|ABA03382.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 939 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +L+ ED+ +R +++ L GY +GA ++ ++P LLLTDI +P M+G + Sbjct: 823 VLVVEDEPVVRGIIVEMLHDQGYVTREAADGAEGLRILQLDKPVDLLLTDIGLPGMNGRQ 882 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA +A EL PDLK++F+TG+A A N +++KPF L L V +++ Sbjct: 883 LADQARELRPDLKILFMTGYADNAANAKGFLQPGMDMITKPFDLGHLSRRVRDIIS 938 >gi|115526822|ref|YP_783733.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] gi|115520769|gb|ABJ08753.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] Length = 123 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 12/118 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-VREE-PFSLLLTDIVMPEMDG 61 +IL+A+D++ MR + +A+ G+++V+ +G A D VRE+ F LLLTDI MP MDG Sbjct: 3 RILIADDEESMRLLVARAIALDGHDIVTAEDGGEALDILVREQGAFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I LA A PDL ++ +TGFA A LN + V++KPF + D+ V Sbjct: 63 IALALAAARDFPDLTILLMTGFADQRERASGLNAIIH-----DVVTKPFSVADIRTAV 115 >gi|116622354|ref|YP_824510.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116225516|gb|ABJ84225.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 135 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 6/113 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 IL+A+D+ + + + L KAG+ V++ + GA A + EEP L + DIVMP++DG+ Sbjct: 16 ILVADDEAIILKVVTIILRKAGFRVLAASCGAQALQIAETSEEPIFLAVLDIVMPDLDGL 75 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL+ R + DL+V+FI+G+ P P A L KPF +L+ VN Sbjct: 76 ELSIRLRGMYSDLRVLFISGYTL----PPPGLPSGADFLGKPFTSDELLRRVN 124 >gi|146341889|ref|YP_001206937.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194695|emb|CAL78720.1| Putative two-component sensor histidine kinase with multiple PAS domains and a CheY-like response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 843 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ +NG A + + E L+++D+VMPEMDG Sbjct: 725 ILLVEDEEGLRALNARGLRSRGYSVIEASNGIEAMEALEECNGELDLVVSDVVMPEMDGP 784 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + E +PD+K++F++G+A A + + P+N + L KPF L LV V + Sbjct: 785 TLLKVMREKNPDIKIIFVSGYAEDAF--EKSLPENQQFAFLPKPFTLSQLVAAVKETM 840 >gi|148550687|ref|YP_001260126.1| histidine kinase [Sphingomonas wittichii RW1] gi|148503106|gb|ABQ71359.1| histidine kinase [Sphingomonas wittichii RW1] Length = 571 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMD 60 + IL EDDDD+R + ++ L + GY V+ ++G SA + + S LL TD+VMP M Sbjct: 321 ETILAVEDDDDVRAYTVECLRELGYRVLEAHDGPSALALMERQGTSVDLLFTDVVMPGMS 380 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA PDL+V++ +G+ A+ + ++++KPF + L ++ +L Sbjct: 381 GRELADELRRRQPDLRVLYTSGYTRNAITHGGRLDEGVEMIAKPFTYQALAMKLRDML 438 >gi|317154329|ref|YP_004122377.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316944580|gb|ADU63631.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 378 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 60/106 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL +D++ +R L A+ AGYEV++ GA A + + + L++TDI MP MD Sbjct: 1 MQHTVLLVDDEEGIRTVLSLAIADAGYEVLTAQTGAQALEMLGKREIPLIVTDIRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G+EL +R + PD +V+ ITG + + +S ++KP H Sbjct: 61 GLELLKRIRKEWPDSEVIMITGHGDMDVAIESLRLGAGDFITKPLH 106 >gi|239905949|ref|YP_002952688.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795813|dbj|BAH74802.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 640 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 64/116 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+K+LL +DD+ +R L ++ GY+V + G A + S++LTDI MP MD Sbjct: 1 MNEKVLLVDDDEAIREVLSLSIADLGYDVETAPGGREALELCATFKPSIVLTDIKMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIEL R LDP+++V+ I+G + L +S + L+KP L ++R Sbjct: 61 GIELLSRVKALDPEIEVIMISGHGDMELAIESLKRQALDFLTKPVRDELLTASLHR 116 >gi|92115866|ref|YP_575595.1| PAS/PAC sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gi|91798760|gb|ABE61135.1| PAS/PAC sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 941 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ ED+ +R +I+ L GY +G + ++ ++P LLLTDI +P M+G Sbjct: 823 ETVLVVEDEPVVRGVIIEMLHDQGYLTREAADGVAGLRILQLDKPVDLLLTDIGLPGMNG 882 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +LA +A EL PDLK++F+TG+A A N + +++KPF L L V +++ Sbjct: 883 RQLADQARELRPDLKILFMTGYAENAANAEGFLLPGMDMITKPFDLGHLSQRVRDIIS 940 >gi|49475714|ref|YP_033755.1| sensor histidine kinase [Bartonella henselae str. Houston-1] gi|49238521|emb|CAF27757.1| Sensor histidine kinase [Bartonella henselae str. Houston-1] Length = 825 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL ED+D +R ++AL GY V+ G A + E ++++D+VMPEMDG Sbjct: 708 ILLVEDEDAVRMGGVRALQMRGYTVLEAATGVEALAVLEENKGAVDIVISDVVMPEMDGP 767 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLLT 119 L + + + PD+K +F++G+A A N P++A LSKPF L+ L +V LT Sbjct: 768 TLLKESRKNYPDIKFIFVSGYAKDAFA--KNLPQDAVFSFLSKPFTLKQLALKVKETLT 824 >gi|85708969|ref|ZP_01040035.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85690503|gb|EAQ30506.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 815 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KILL ED+D +R +AL +AGY+V C G + + F L+++D+VMP MDG Sbjct: 692 KILLVEDEDMVRAVAERALSRAGYQVTPCAGGEEGLAAIEGDGDFDLVVSDVVMPGMDGP 751 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 + R + P + V+F++G+A +L D + P + + KPF + D V EV R Sbjct: 752 AMVREIRKAHPKIPVLFMSGYAEESLRKDIDIP-DMHFIPKPFSVAAISDKVGEVMR 807 >gi|39936943|ref|NP_949219.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39650800|emb|CAE29323.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 882 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GYEV+ +NG A ++ L+++D+VMPEMDG Sbjct: 764 ILLVEDEEGLRSLNARGLRSRGYEVIEASNGVEALEEFDAHGGEVDLVVSDVVMPEMDGP 823 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + +PDLK++F++G+A A + + P+N + L+KPF L LV +V + Sbjct: 824 TLLKAMRGRNPDLKIIFVSGYAEDAF--EKSLPENEQFAFLAKPFALSALVAKVKETM 879 >gi|218673996|ref|ZP_03523665.1| two-component sensor histidine kinase protein [Rhizobium etli GR56] Length = 203 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/122 (40%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 N+ +L+ EDD +RR + L GY V NG A D +RE P +LL TDIVMP M Sbjct: 83 NEMVLVVEDDARVRRVAVARLASMGYTVREAENGHRALDLLRENPDIALLFTDIVMPGGM 142 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELAR L PD+ V+F +G++ L P A+ L KP+ R+L ++ LL Sbjct: 143 TGDELAREVRILRPDIAVLFTSGYSEPGLAGKGIVP-GAQWLRKPYTARELALKLRELLD 201 Query: 120 IK 121 K Sbjct: 202 AK 203 >gi|291279183|ref|YP_003496018.1| hypothetical protein DEFDS_0784 [Deferribacter desulfuricans SSM1] gi|290753885|dbj|BAI80262.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 766 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ IL+ ED+D + + L GY V++ NN A + + E+ F L++TD++MP+M Sbjct: 646 NETILVVEDEDYLLDAIKMQLESLGYRVIAFNNPEKALENIVEKKIDFDLIITDVIMPKM 705 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E + E+ + KV+F +G+ ++ + +N + + KP+H+ DL ++ RLL Sbjct: 706 SGKEFFDKVKEVIHEPKVIFCSGYPESIISAEGIIGENIEFIQKPYHIEDLAKKIRRLL 764 >gi|256823505|ref|YP_003147468.1| two component Fis family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797044|gb|ACV27700.1| two component transcriptional regulator, Fis family [Kangiella koreensis DSM 16069] Length = 202 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 2/114 (1%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN++ IL+ +DD +R L +AL A Y+V+SC+NG A + V ++++TDI M Sbjct: 1 MNEQATILVVDDDSSIRWVLARALHNAEYKVISCDNGTEAIELVNTHQPNIVITDIQMSG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 M G+EL + + P L V+ IT +A + ++ L KPF++ ++N Sbjct: 61 MSGLELLEKLNQSHPSLPVIMITAYADTDIGSQTHDLGAFDYLPKPFNINQVIN 114 >gi|39937796|ref|NP_950072.1| CheY-like response regulator receiver [Rhodopseudomonas palustris CGA009] gi|39651656|emb|CAE30178.1| response regulator receiver (CheY-like protein) [Rhodopseudomonas palustris CGA009] Length = 126 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 12/126 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +IL+A+D++ MR + +A+G G+E V+ +G+ A + + + F LLLTDI MP MDG Sbjct: 3 RILIADDEESMRLLVARAIGIDGHETVTAEDGSEALEILTSQNGKFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 I LA A PDL ++ +TGFA A L+ + V++KPF + D+ V Sbjct: 63 IALALAAARDFPDLTILLMTGFADQRERAFGLDAIVH-----DVVTKPFSVADIRTAVAD 117 Query: 117 LLTIKN 122 L+ K Sbjct: 118 ALSAKK 123 >gi|118581010|ref|YP_902260.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503720|gb|ABL00203.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 661 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ +LL EDD+ +R L AGY V+ +G A ++ RE+ +L++DI+MP + Sbjct: 540 NETVLLVEDDEVVRELNRAVLEYAGYTVIETIDGREALERFREQSHRMDILVSDIIMPNL 599 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG L ++ PD+KV+FI+G+A AL+ + KP +L+ V +L Sbjct: 600 DGKALYDEIMKIRPDMKVLFISGYAEDALDARGLFESEHNFMPKPVKPSELLKRVREIL 658 >gi|86136346|ref|ZP_01054925.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Roseobacter sp. MED193] gi|85827220|gb|EAQ47416.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Roseobacter sp. MED193] Length = 682 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 73/119 (61%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 +ILLAEDDD +R L+K L AGY+V++ +G +A +P F L++TDIVMP + Sbjct: 563 HRILLAEDDDAVREVLVKTLENAGYDVIAAPSGDAAKAIFEADPSFDLVITDIVMPGRLL 622 Query: 61 GIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L+ L PDL ++F++G+A+ A ++ + P++ +++ KP L+ + ++L Sbjct: 623 GTTLSAELRLLAPDLPIIFMSGYASEATVHGNGLRPEDIRLM-KPVQRAKLIGAIQKIL 680 >gi|218530776|ref|YP_002421592.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523079|gb|ACK83664.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 903 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R +AL GY V+ +G A + E + ++++D+VMPEMDG Sbjct: 786 VLLVEDEDPVRAVNSRALSARGYTVLEAASGIEALRLIEEHADGIDVVVSDVVMPEMDGP 845 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + PDLKV+F++G+A A + + L KPF L+ LV V + + Sbjct: 846 TLLRELRKHMPDLKVIFVSGYAEDAFRKNLPEGETFNFLPKPFSLKQLVETVKQTM 901 >gi|90424382|ref|YP_532752.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90106396|gb|ABD88433.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 818 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 IL+ ED+ MR+F I+ALG GY V A+A + P +LL TDI+MP+++G + Sbjct: 702 ILVVEDEPAMRQFSIEALGTLGYRVCEAEGAATALALLDAHPDIALLFTDIIMPDVNGRQ 761 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A PDLKV++ TG+ A+ + +++SKPF + L ++ +L Sbjct: 762 LADEACRRRPDLKVLYTTGYTRNAVVHNGVVDPGVQLISKPFTIDQLAEKLREVL 816 >gi|189425842|ref|YP_001953019.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189422101|gb|ACD96499.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 480 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+A+D++ MR L KAL K GY V +G A +VRE+ + L++ DI MP M G+ Sbjct: 4 HRILVADDEESMRWVLSKALRKKGYSVDLAADGNQALRQVREQSYDLVIVDIKMPGMSGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR---DLVNEVNRLLT 119 E +A EL PDL V+ +T A++ ++ ++KPF L ++ +V+R Sbjct: 64 EFLDKARELRPDLLVVVMTAEASMKNAVEAMKRGAYDYITKPFDLEVIDAIIEKVSRARD 123 Query: 120 IKN 122 + N Sbjct: 124 VSN 126 >gi|254561745|ref|YP_003068840.1| sensor hybrid histidine kinase with multiple PAS and response regulator receiver domains [Methylobacterium extorquens DM4] gi|254269023|emb|CAX24984.1| sensor hybrid histidine kinase with multiple PAS and response regulator receiver domains [Methylobacterium extorquens DM4] Length = 903 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R +AL GY V+ +G A + E + ++++D+VMPEMDG Sbjct: 786 VLLVEDEDPVRAVNSRALSARGYTVLEAASGIEALRLIEEHADGIDVVVSDVVMPEMDGP 845 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + PDLKV+F++G+A A + + L KPF L+ LV V + + Sbjct: 846 TLLRELRKHMPDLKVIFVSGYAEDAFRKNLPEGETFNFLPKPFSLKQLVETVKQTM 901 >gi|240139289|ref|YP_002963764.1| sensor hybrid histidine kinase with multiple PAS and response regulator receiver domains [Methylobacterium extorquens AM1] gi|240009261|gb|ACS40487.1| sensor hybrid histidine kinase with multiple PAS and response regulator receiver domains [Methylobacterium extorquens AM1] Length = 903 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R +AL GY V+ +G A + E + ++++D+VMPEMDG Sbjct: 786 VLLVEDEDPVRAVNSRALSARGYTVLEAASGIEALRLIEEYADGIDVVVSDVVMPEMDGP 845 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + PDLKV+F++G+A A + + L KPF L+ LV V + + Sbjct: 846 TLLRELRKHMPDLKVIFVSGYAEDAFRKNLPEGETFNFLPKPFSLKQLVETVKQTM 901 >gi|253702310|ref|YP_003023499.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251777160|gb|ACT19741.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 845 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ ILL ED+ +R + L GY V++ A + R + L++TD+VMPEM Sbjct: 722 HETILLVEDEPTIREVTVSLLQLQGYRVLAAGLPHEALELARAHADEIDLVMTDVVMPEM 781 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G ELAR + P +K +F++G+ A + + +SKPF L DL +V +L Sbjct: 782 NGRELARSLLAISPRMKCLFMSGYTANVIAHHGVLEEGVNFISKPFSLSDLAEKVREVLD 841 Query: 120 IK 121 K Sbjct: 842 AK 843 >gi|291280089|ref|YP_003496924.1| hypothetical protein DEFDS_1712 [Deferribacter desulfuricans SSM1] gi|290754791|dbj|BAI81168.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 470 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 68/118 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D +R L L YEVV +NG A + + E+ F ++TDI MPEMDGI Sbjct: 7 RILIVDDEDYVRDSLKIILLAENYEVVDVDNGYRALELLNEKYFDFVITDIKMPEMDGIT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ E P++ V+ +TGF ++ + ++KPF + DL+N++++ K Sbjct: 67 LLKKIKEKYPEIPVIVMTGFPSIDNAIAALKEGAFDYVTKPFKVEDLINKLHKAYETK 124 >gi|218463305|ref|ZP_03503396.1| putative two-component sensor histidine kinase protein [Rhizobium etli Kim 5] Length = 257 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +N IL+ EDD+ +R ++L + GY V+ G A + E P L+ TDIVMP+M Sbjct: 128 VNDTILVVEDDEHVRTMTAESLHELGYTVLQAAGGPEALLLLEENPDVDLIFTDIVMPQM 187 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA E P +++++ TG+ A+ + +L+KPF L L +++ LL Sbjct: 188 SGRQLADAVQEKWPTIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELL 246 >gi|156743609|ref|YP_001433738.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234937|gb|ABU59720.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1034 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 7/120 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + IL+ ED+ +R ++ L GY V +NG A V P LLLTD+VMPEM Sbjct: 909 ETILVVEDEPAVRSLAVRILRDHGYTVFEASNGREAQRVVETLPGHALHLLLTDLVMPEM 968 Query: 60 DGIELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELA P + V+F++G+A V +N D+ L KPF R L+++V LL Sbjct: 969 SGVELATWVQARCPGVSVLFMSGYARQVTINRDN---PGVAFLQKPFSRRTLLSQVRCLL 1025 >gi|15890924|ref|NP_356596.1| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] gi|15159232|gb|AAK89381.1| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] Length = 991 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD+ +R + L +G+ VV N A A + + +P +L+TD+ +P+M G E Sbjct: 873 RVLLVEDDELIRMNSTEMLSDSGFAVVEAGNAAQALEVIEADPIDVLVTDLGLPDMKGGE 932 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 LA A P L ++F TG + + AP++A +L+KP+ + +V V R T K Sbjct: 933 LAAEALRRKPGLAIVFATGDSHLP----EGAPESAVLLTKPYDEQQIVAAVERAHTAK 986 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 2/105 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD+++R +++ LG GY V++ + + V P ++ TD+VMP + Sbjct: 719 ETILVVEDDEEVRNTVVETLGDLGYRVLTARDAQAGLTVVESGIPIDVIFTDVVMPGSLK 778 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E+ARRA E P+L V+F +G+ ++ ++LSKP+ Sbjct: 779 SREMARRAQERLPNLAVLFTSGYTENSIVHGGKLDAGVELLSKPY 823 >gi|126462868|ref|YP_001043982.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126104532|gb|ABN77210.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 770 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL GY V+ N A + E+P + +TD+VMP MDG Sbjct: 654 VLLVEDEAPVRAFASRALRMRGYTVIEAENAEEAL-RALEDPALEVDVFVTDVVMPGMDG 712 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R+A + PD++V+F++G+A L + N+ L KPF L DL + V Sbjct: 713 PTWVRQALQQRPDVRVIFVSGYAEECLAESQSRIPNSVFLPKPFSLNDLTSTV 765 >gi|300023636|ref|YP_003756247.1| multi-sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525457|gb|ADJ23926.1| multi-sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 868 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDG 61 ++LL ED+ ++R+F ++AL + GY+V+ +G A + E ++++D+VMPEMDG Sbjct: 751 RVLLVEDEVEVRQFAVRALKRQGYQVLEATDGVEALEIMAANEGEIDIVVSDVVMPEMDG 810 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + +P +KV+F++G+ A +S N L KPF L L +V L Sbjct: 811 PALFKELRKRNPSIKVIFVSGYPNEAFR-ESMGSDNFAFLPKPFSLPQLAAKVKEEL 866 >gi|77464023|ref|YP_353527.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77388441|gb|ABA79626.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 766 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL GY V+ N A + E+P + +TD+VMP MDG Sbjct: 650 VLLVEDEAPVRAFASRALRMRGYTVIEAENAEEAL-RALEDPALEVDVFVTDVVMPGMDG 708 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R+A + PD++V+F++G+A L + N+ L KPF L DL + V Sbjct: 709 PTWVRQALQQRPDVRVIFVSGYAEECLAESQSRIPNSVFLPKPFSLNDLTSTV 761 >gi|194337020|ref|YP_002018814.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309497|gb|ACF44197.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 650 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMP 57 + QK+L+ +D+D +R+F ++AL GYEV G A V + +P L++TD++MP Sbjct: 528 LQQKVLVVDDNDLLRKFTVQALNMKGYEVADAPGGEEALRLVTKGLLKP-DLVITDVIMP 586 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M+G E + + L P +KV+++TG+A+ + ++L KPF ++ L+ +V + Sbjct: 587 GMNGWEFSEQLLRLLPQVKVIYMTGYASDVIELYGIPENGRELLYKPFTIQVLMEKVQSV 646 Query: 118 LTIK 121 L K Sbjct: 647 LQRK 650 >gi|116625799|ref|YP_827955.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228961|gb|ABJ87670.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 751 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 + +L+AED+ +R + + L + GY V+ +G A + R+ LLLTD++MP M+ Sbjct: 627 ETVLVAEDEPAVRELVRQTLEQRGYTVLEAKDGYEALRVFEQRKNEIHLLLTDVIMPLMN 686 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ELA+R L P +K+++++G+ L A + + KPF +L N+V +L++ Sbjct: 687 GRELAKRLESLRPGMKIVYMSGYTDEVLAFHGFAQPEIEFIQKPFTASELANKVELVLSV 746 >gi|190410039|ref|YP_001965563.1| hypothetical protein [Sinorhizobium meliloti] gi|125631069|gb|ABN47070.1| hypothetical protein [Sinorhizobium meliloti SM11] Length = 151 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 72/118 (61%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE--MD 60 I+L ED+ + +AL +AG+ VV+C++G A + +R E ++TDI +P+ +D Sbjct: 27 IMLVEDEGLLLFEFEEALTEAGFNVVACSSGTRAVEYLRSAEGAAEGVVTDIRLPDRALD 86 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+AR A E+DP + V++I+G AV P P N+ VL KPF + L+ +++LL Sbjct: 87 GWEVARIAREIDPKVAVVYISGHGAVEW-PSRGVP-NSIVLEKPFAIAQLITAISQLL 142 >gi|92116284|ref|YP_576013.1| response regulator receiver domain-containing protein [Nitrobacter hamburgensis X14] gi|91799178|gb|ABE61553.1| response regulator receiver domain protein (CheY-like) [Nitrobacter hamburgensis X14] Length = 127 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 12/114 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++L+A+D+D MR + +A+ G+E V+ +GA A D + + F LLLTDI MP MDG Sbjct: 3 RVLIADDEDSMRSLVARAVAMDGHETVTAADGAEALDILTGDARGFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDL 110 I LA A PDL ++ +TGFA A LN + V++KPF + D+ Sbjct: 63 IALALAAARDFPDLVILLMTGFADQRERASGLNAIVH-----DVVTKPFSVADI 111 >gi|91975421|ref|YP_568080.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91681877|gb|ABE38179.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 125 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +IL+A+D++ MR + +A+ G+E+++ +G+ A + + E F LLLTDI MP MD Sbjct: 2 SRILIADDEESMRLLVARAIAMDGHEIMTAEDGSEALEILVEHAGRFDLLLTDIKMPIMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI LA A PDL ++ +TGFA V++KPF + D+ N V L Sbjct: 62 GIALALAAARDFPDLTILLMTGFADQRERASGLDAIIHDVITKPFSVVDIRNAVANALAA 121 Query: 121 KN 122 + Sbjct: 122 RK 123 >gi|218778398|ref|YP_002429716.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759782|gb|ACL02248.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 750 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 Q+IL+ ED+ +R L + GY V+S +G A + ++E+ P LLLTD++MP+M+ Sbjct: 631 QRILVVEDNPKVRILAGNILTRLGYTVISAESGGHALEILKEDKTPIDLLLTDVIMPKMN 690 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL R E+ P +KV++++G+ + + L KPF + L +V L Sbjct: 691 GKELFTRIAEIHPKVKVLYMSGYTGDVIVHHGILDEGVFYLPKPFSVSGLAEKVREAL 748 >gi|114767714|ref|ZP_01446399.1| sensory box sensor histidine kianse/response regulator [Pelagibaca bermudensis HTCC2601] gi|114540286|gb|EAU43387.1| sensory box sensor histidine kianse/response regulator [Roseovarius sp. HTCC2601] Length = 594 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V NG A + ++ + +++TD+VMP +DG Sbjct: 478 VLLVEDEAPVRAFAARALEMRGYSVTEAGNGEEALTLLSDDTMAVDIIVTDVVMPGLDGP 537 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A PD V+F++G+A N+ L KPF L +L VNR L Sbjct: 538 SWVREARRARPDTPVIFVSGYAEDVFAEGGEVVPNSVFLPKPFSLTELTETVNRQL 593 >gi|295700867|ref|YP_003608760.1| histidine kinase [Burkholderia sp. CCGE1002] gi|295440080|gb|ADG19249.1| histidine kinase [Burkholderia sp. CCGE1002] Length = 552 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 2/113 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +L+ EDD+++R L+++L GY V +G + D++ ++ LL+ D MP M+G Sbjct: 436 DKHVLVVEDDNEVRAMLVESLRMLGYTVTEAADGQAGLDRLVDDHPDLLMVDFAMPGMNG 495 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I++ A +L DL V+ TG+A V N A K+ +L KPF L DL V Sbjct: 496 IDVIAAARKLRADLPVILATGYADV--NISDLAVKHCTILRKPFQLDDLARTV 546 >gi|332558897|ref|ZP_08413219.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] gi|332276609|gb|EGJ21924.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] Length = 758 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL GY V+ N A + E+P + +TD+VMP MDG Sbjct: 642 VLLVEDEAPVRAFASRALRMRGYTVIEAENAEEAL-RALEDPALEVDVFVTDVVMPGMDG 700 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R+A + PD++V+F++G+A L + N+ L KPF L DL + V Sbjct: 701 PTWVRQALQQRPDVRVIFVSGYAEECLAESQSRIPNSVFLPKPFSLNDLTSTV 753 >gi|162452213|ref|YP_001614580.1| sensory box histidine kinase/response regulator hybrid [Sorangium cellulosum 'So ce 56'] gi|161162795|emb|CAN94100.1| sensory box histidine kinase/response regulator hybrid [Sorangium cellulosum 'So ce 56'] Length = 732 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 10/123 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPE 58 ++ +L+ EDDD +R+ ++ L + GY V+S +G A + E+ LLLTD+VMP Sbjct: 611 DETVLVVEDDDAVRKLIVDVLERRGYGVLSAASGEEALAILAREGEDAVDLLLTDLVMPG 670 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVAL---NPDSNAPKNAKVLSKPFHLRDLVNEVN 115 M+G ELA RA + P +V++I+G+A L PD + +L KPF L + Sbjct: 671 MNGRELAERAVAIHPRARVLYISGYAEDVLAGAEPD----RELALLQKPFTPETLAQRLR 726 Query: 116 RLL 118 LL Sbjct: 727 DLL 729 >gi|328952925|ref|YP_004370259.1| anti-sigma H sporulation factor, LonB [Desulfobacca acetoxidans DSM 11109] gi|328453249|gb|AEB09078.1| anti-sigma H sporulation factor, LonB [Desulfobacca acetoxidans DSM 11109] Length = 670 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 66/117 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ +D++ R L L K G++V + NGA A +KV+ + F +++TD+ M +MDG Sbjct: 115 SSNLLVVDDEEIARTNLEYILRKEGHQVSTAANGAEALEKVKAQNFDVIVTDLKMDQMDG 174 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L + P +V+ +TGFA V+ D+ A LSKP L +L V L+ Sbjct: 175 LQLLENVKRVSPHSEVIMVTGFATVSTAVDALKKGAAHYLSKPIKLEELRQTVRELV 231 >gi|218778750|ref|YP_002430068.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760134|gb|ACL02600.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 577 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDGI 62 I++ ED+ +RR K L + GY V+ +G SA + +P L+L+D++MP + G Sbjct: 458 IMVIEDEAAVRRLACKILRRKGYNVIESEDGESALSFACAYNKPIHLVLSDVIMPGLKGP 517 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + P+ K +F++G++ ++ ++N N +SKPF L+ EV ++L++ Sbjct: 518 EIMNGIIKYHPEAKALFMSGYSEEHISSENNQKYNHPFISKPFSGSQLLAEVAKILSV 575 >gi|94266547|ref|ZP_01290233.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93452822|gb|EAT03348.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 305 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 65/115 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +DD + L A+ G+ V+ +G A +K+ E F+++L+D+ MP MDG+ Sbjct: 16 KILAVDDDPQVLNLLQTAITSFGHHCVTATDGVEALEKLEENGFAIVLSDMTMPRMDGMA 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++A +L P L ++ ITG+A + + ++KPF + +L ++ R+L Sbjct: 76 LLKKAKDLHPRLDIIMITGYAETYSYTEVIRAGASDFITKPFGINELEAKLRRVL 130 >gi|242309377|ref|ZP_04808532.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] gi|239523948|gb|EEQ63814.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] Length = 221 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL EDD ++ + + L + GYEVV CN+G A +K EE F +LL D+++P +D Sbjct: 1 MKAKILLLEDDMALQEIIAECLSEEGYEVVCCNDGIEASNKAYEENFDILLLDVMVPNLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E + + + +FIT ++ L KPF L +L+ + LL Sbjct: 61 GFETLKSIHQSGRRIPAIFITALNSIKDLEIGFKSGCDDYLRKPFELSELLLRIEALLKR 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|240850723|ref|YP_002972123.1| sensor histidine kinase [Bartonella grahamii as4aup] gi|240267846|gb|ACS51434.1| sensor histidine kinase [Bartonella grahamii as4aup] Length = 844 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 6/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V+ +G A + E+ ++++D+VMPEMDG Sbjct: 727 VLLVEDEDAVRMGGVRALQMRGYTVLEAASGVEALSILEEQKGAVDIIVSDVVMPEMDGP 786 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLLT 119 L + + PD+K +F++G+A A N P++A LSKPF L++L V L+ Sbjct: 787 TLLKEVRKNYPDIKFLFVSGYAKDAFA--KNLPQDAVFGFLSKPFTLKELALTVKETLS 843 >gi|254487190|ref|ZP_05100395.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] gi|214044059|gb|EEB84697.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] Length = 742 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ ++ A + +E ++ +TD++MP MDG Sbjct: 626 VLLVEDEAPVRAFASRALRMRGYTVLEADSAEVALKTLEDETLNIDVFVTDVIMPGMDGP 685 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R A + P + V+F++G+A + A N+ L KPF L DL N V+R Sbjct: 686 SWVREALKCRPGVPVVFVSGYAEDSFEAAQMAIPNSVFLPKPFSLTDLTNTVHR 739 >gi|46446998|ref|YP_008363.1| two-component response regulator [Candidatus Protochlamydia amoebophila UWE25] gi|46400639|emb|CAF24088.1| probable two-component response regulator [Candidatus Protochlamydia amoebophila UWE25] Length = 441 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 64/114 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ MR FL +AL + G E ++ NG A V+E+ F +++TD+ MP ++GI Sbjct: 4 EKILIVDDELIMRNFLTEALKRKGIEAIAAENGEKAIKIVQEQSFDMVITDMKMPGLNGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ ++ EL P V+ +T F + D+ + KPF L L+ + + Sbjct: 64 DVLQKIKELSPQTLVIVMTAFGTIENAVDAMKLGAFHYIIKPFSLESLMANIEK 117 >gi|149916863|ref|ZP_01905364.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149822141|gb|EDM81532.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 719 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDG 61 +ILL +D+ +R + L K GYEV+ +G SA + RE S L++ D+VMP+M G Sbjct: 602 RILLVDDEPIVRAVGEQLLTKLGYEVILAEDGRSAIEGYREAHASVDLVILDLVMPQMSG 661 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++AR +DP ++++F +GF+ L P A + KP+ L DL ++R+L Sbjct: 662 HDVARELRSIDPAVRLLFSSGFSRKGLAPQD----AAGFIKKPYRLADLRKAIDRVL 714 >gi|86361238|ref|YP_473125.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86285340|gb|ABC94398.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 623 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ +L+ EDD +RR + L GY V+ NG A D +RE P +LL TDIVMP + Sbjct: 503 DETVLVVEDDARVRRVAVARLASMGYTVLEAENGRRALDLLRENPDIALLFTDIVMPGGI 562 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELAR L PD+ V+F +G++ L P A+ L KP+ R+L ++ LL Sbjct: 563 TGDELAREVRLLRPDIAVLFTSGYSEPGLAGKGIVP-GAQWLRKPYTARELALKIRELLD 621 Query: 120 IK 121 K Sbjct: 622 TK 623 >gi|258542826|ref|YP_003188259.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-01] gi|256633904|dbj|BAH99879.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-01] gi|256636963|dbj|BAI02932.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-03] gi|256640016|dbj|BAI05978.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-07] gi|256643072|dbj|BAI09027.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-22] gi|256646127|dbj|BAI12075.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-26] gi|256649180|dbj|BAI15121.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-32] gi|256652167|dbj|BAI18101.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655224|dbj|BAI21151.1| two component response regulator NtrC [Acetobacter pasteurianus IFO 3283-12] Length = 480 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 69/115 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG+AGY+V + + + + V+E L++TD++MP+ G++L Sbjct: 7 ILVADDDRSIRTVLGQALGRAGYQVQTTPSVNTLWQWVQEGEGDLVITDVIMPDGSGLDL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + PDL+V+ ++ + + + + L+KPF L++L+ V R LT Sbjct: 67 VTRIRQFRPDLRVIVMSAQSTLTTAVKATQRGAFEYLAKPFDLKELLAVVARALT 121 >gi|94272493|ref|ZP_01292134.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93450109|gb|EAT01451.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 305 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 65/115 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +DD + L A+ G+ V+ +G A +K+ E F+++L+D+ MP MDG+ Sbjct: 16 KILAVDDDPQVLNLLQTAITSFGHHCVTATDGVEALEKLEENGFAIVLSDMTMPRMDGMA 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++A +L P L ++ ITG+A + + ++KPF + +L ++ R+L Sbjct: 76 LLKKAKDLHPRLDIIMITGYAETYSYTEVIRAGASDFITKPFGINELEAKLRRVL 130 >gi|329114576|ref|ZP_08243335.1| Nitrogen assimilation regulatory protein [Acetobacter pomorum DM001] gi|326696056|gb|EGE47738.1| Nitrogen assimilation regulatory protein [Acetobacter pomorum DM001] Length = 480 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 69/115 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG+AGY+V + + + + V+E L++TD++MP+ G++L Sbjct: 7 ILVADDDRSIRTVLGQALGRAGYQVQTTPSVNTLWQWVQEGEGDLVITDVIMPDGSGLDL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + PDL+V+ ++ + + + + L+KPF L++L+ V R LT Sbjct: 67 VTRIRQFRPDLRVIVMSAQSTLTTAVKATQRGAFEYLAKPFDLKELLAVVARALT 121 >gi|163852022|ref|YP_001640065.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163663627|gb|ABY30994.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 903 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R +AL GY V+ +G A + E + ++++D+VMPEMDG Sbjct: 786 VLLVEDEDPVRAVNSRALSARGYTVLEAASGIEALRLIEEHADGIDVVVSDVVMPEMDGP 845 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + PDLKV+F++G+A A + + L KPF L+ LV V + + Sbjct: 846 TLLRELRKHMPDLKVIFVSGYAEDAFRKNLPEGEAFNFLPKPFSLKQLVETVKQTM 901 >gi|110635423|ref|YP_675631.1| response regulator receiver protein [Mesorhizobium sp. BNC1] gi|110286407|gb|ABG64466.1| response regulator receiver protein [Chelativorans sp. BNC1] Length = 121 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 K+L+ +DD +R F +AL AG+ V +G A K+ E F L+L+DI MP MDG Sbjct: 3 KLLIVDDDHSVRTFTARALAAAGHMVEMAEDGIDALQKLENAEGAFDLVLSDIRMPAMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS---KPFHLRDLVNEVNRLL 118 IE+AR A P L+++ +TG+A + A + VL KPF L ++ + V + L Sbjct: 63 IEMARTAARTFPGLRLLLMTGYAE---QRERAAEMDGTVLGVVNKPFTLAEIRDRVGKAL 119 >gi|168701427|ref|ZP_02733704.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1032 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEP-FSLLLTDIVMPEMD 60 + +LL ED D+RR + +L GY V+ +G +A D V R+ P LL+TD+VMP M+ Sbjct: 894 ETVLLVEDQPDVRRVALVSLQAHGYRVIEAGDGRTALDLVERDRPHLDLLVTDVVMPGMN 953 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA L P LKV++++G+ A+ N L KPF L +V LL Sbjct: 954 GRQLAEALRPLYPGLKVLYMSGYTDDAVVRHGVLQANVAFLHKPFTPFSLAGKVRELL 1011 >gi|325921448|ref|ZP_08183304.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas gardneri ATCC 19865] gi|325548090|gb|EGD19088.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas gardneri ATCC 19865] Length = 122 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED +++R + +AL AG V + ++G SA +RE P+ ++ +DI MP M G Sbjct: 6 RLLMVEDQEELRELIGEALRDAGITVDTADDGHSALRMLRESGPYDVVFSDIRMPNGMSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ + T+L P +++ +GFA L P P L KP+ LR L++ Sbjct: 66 IELSEQVTQLLPQARIILASGFAKAQLPP---LPPQVDFLPKPYRLRQLID 113 >gi|163746277|ref|ZP_02153635.1| sensor kinase-like protein, putative [Oceanibulbus indolifex HEL-45] gi|161380162|gb|EDQ04573.1| sensor kinase-like protein, putative [Oceanibulbus indolifex HEL-45] Length = 525 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 ILL ED+ +R F +AL GY V+ + +A + ++ + +TD+VMP MDG Sbjct: 409 ILLVEDEAPVRAFASRALRLRGYTVLEAESAEAALKTLEDKDLDIDVFVTDVVMPGMDGP 468 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+A + PD++V+F++G+A + + N+ L KPF L DL N V+ L Sbjct: 469 SWVRQALKQRPDVRVVFVSGYAEDNFGEEQSKIPNSVFLPKPFSLTDLTNTVHNQL 524 >gi|9857983|gb|AAG00949.1|AF273679_3 FixL [Rhizobium etli CFN 42] Length = 641 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ +L+ EDD +RR + L GY V+ NG A D +RE P +LL TDIVMP + Sbjct: 521 DETVLVVEDDARVRRVAVARLASMGYTVLEAENGRRALDLLRENPDIALLFTDIVMPGGI 580 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELAR L PD+ V+F +G++ L P A+ L KP+ R+L ++ LL Sbjct: 581 TGDELAREVRLLRPDIAVLFTSGYSEPGLAGKGIVP-GAQWLRKPYTARELALKIRELLD 639 Query: 120 IK 121 K Sbjct: 640 TK 641 >gi|226226432|ref|YP_002760538.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226089623|dbj|BAH38068.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 735 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +L+ EDD D+R+ L +AGY V NG A + +R + LL+TD+VMP + G+ Sbjct: 620 VLVVEDDRDVRQLTEYVLSEAGYTVHVARNGVDALEVLRRKGPEIDLLVTDLVMPGLGGV 679 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +LAR L V+F+TG+A A + P A VL+KPF LV +V Sbjct: 680 DLARHDLVAARKLPVLFLTGYATDATVNMTVLPSEAHVLAKPFTPAQLVEDV 731 >gi|325917910|ref|ZP_08180083.1| response regulator receiver protein [Xanthomonas vesicatoria ATCC 35937] gi|325535890|gb|EGD07713.1| response regulator receiver protein [Xanthomonas vesicatoria ATCC 35937] Length = 113 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 1/113 (0%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIELA 65 + EDDD +R L GY+VV + A +++ PF LLL+DI +P M+G +LA Sbjct: 1 MVEDDDAIRAMTADILCDEGYQVVVSADAEQAMEQLTGACPFDLLLSDICLPGMNGRDLA 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A L P L ++F+TG+A + ++L+KPF LRDL+ V +L Sbjct: 61 DNARRLYPALPIIFMTGYAGASAKRADFLDTGMRLLTKPFSLRDLLGIVQTVL 113 >gi|302035609|ref|YP_003795931.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300603673|emb|CBK40004.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 545 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEM 59 ++ ILL EDD +R + L K GY+V+ NG A ++ + LLLTD+VMP M Sbjct: 401 SETILLVEDDSGVRNLVRHELVKTGYQVIEAKNGVEACLTATQQSYHVDLLLTDVVMPGM 460 Query: 60 DGIELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA+ + + P+L+V+F++G+ +++N + P L KPF L+ V LL Sbjct: 461 NGRELAQHLSVIKPNLRVLFMSGYLDDISVNSGMD-PHRTTFLQKPFTPDLLLRTVRALL 519 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 42 VREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 +R+E FSL+L D +P DG A L PD+ +F++G Sbjct: 46 LRQEGFSLILADTTVPGFDGAAALSLARTLHPDVPFLFVSG 86 >gi|229590482|ref|YP_002872601.1| putative two-component system response regulator protein [Pseudomonas fluorescens SBW25] gi|229362348|emb|CAY49250.1| putative two-component system, response regulator protein [Pseudomonas fluorescens SBW25] Length = 125 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ EDD+ + L + L GY V+ +G A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDDESIMFVLGEYLAGLGYRVLKAIDGEQAFEILATKPHLDLMVTDYRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ L+ +S +NA +L+KPF L L + RLL+ Sbjct: 69 QIAEPAIMLRPELKVIFISGYPQEILDCNSPITRNAPILAKPFDLDTLQEHIQRLLS 125 >gi|193215321|ref|YP_001996520.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193088798|gb|ACF14073.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 782 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS---AYDKVREEPFSLLLTDIVMPE 58 ++ ILL +D+ D+R+ + + L K GYEV +NG + AY K L++TD+ MPE Sbjct: 663 SETILLVDDESDLRKLVSRILKKYGYEVYEASNGLTGLAAYQK-HSSTIDLIVTDLGMPE 721 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG E R + + KV+ +TG+ +N V+ KPF L+ E+ RLL Sbjct: 722 MDGEEFIRHVKSANENAKVLIVTGYYDEE-QISKLLTQNMSVIQKPFDSNTLLKEIRRLL 780 >gi|167013231|pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response Regulator Spo0f Mutant L66a From Bacillus Subtilis Length = 132 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 68/122 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+A+R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 62 GIEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 Query: 121 KN 122 K+ Sbjct: 122 KS 123 >gi|218778350|ref|YP_002429668.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759734|gb|ACL02200.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 598 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 ++IL EDD + K L GYEVVS + A + K R E +LL+TD++MP+M Sbjct: 479 GERILFVEDDGPILELGKKILTSLGYEVVSSPSPLQALELAKSRGEEIALLVTDVIMPKM 538 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA ++ P+LKV+FI+G+ A + + L KPF +L +V L Sbjct: 539 NGRELAETLQDMFPNLKVLFISGYTADIIAQKGVVEEGVHFLPKPFTKAELAAKVREAL 597 >gi|148557619|ref|YP_001265201.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148502809|gb|ABQ71063.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 625 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + IL+ ED+ +R F + AL GY V+S N A A + + +P S+L TDIVMPEM+G Sbjct: 500 ETILVVEDEQRVRHFSVDALRDLGYVVISAANAAEALEALTAQPTISMLFTDIVMPEMNG 559 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A EL P L ++F TG+ A+ + L+KPF L L +V +L Sbjct: 560 RQLADTALELRPGLPILFTTGYTRNAVIHNGMLDAGVAFLAKPFSLSQLGTKVREVL 616 >gi|95931065|ref|ZP_01313792.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132874|gb|EAT14546.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 471 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 73/117 (62%), Gaps = 4/117 (3%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q +IL+ +D+ +R + + L + GYEV++ +G +A +KV+ + F+++++D+ MP M Sbjct: 1 MSQPRILVVDDEAVIREAVKRILEQEGYEVITATSGHTALEKVQIDDFTVVISDLKMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNE 113 G+E+ + L PD+ V+ ITG+A V D+ LSKPF ++++VN+ Sbjct: 61 GGMEVLKSIKILQPDVPVIIITGYATVETAVDAIKNGAFDYLSKPFTPPQVKEMVNK 117 >gi|90420924|ref|ZP_01228829.1| histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334899|gb|EAS48671.1| histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 845 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 ILL ED+D +R ++AL GY+V +G A + + E L+++D+VMPEMDG Sbjct: 727 SILLVEDEDHVRAGNVRALKMRGYDVHEAASGIEALEVMEELDGKIELVVSDVVMPEMDG 786 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + P+LK +F++G+A A N P+ K L+KPF LR+L V +L Sbjct: 787 PTLLREMRKTRPELKFIFVSGYAEDAFA--KNLPEGEKFGFLAKPFSLRELAVAVKNML 843 >gi|46200837|ref|ZP_00207864.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 794 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 ILL ED+D +R F +AL GY V+ +G A + + EP +L++D+VMP MDG+ Sbjct: 677 ILLVEDEDAVRLFGARALRNKGYTVIEARSGEQAMEVLNGGEPIEVLISDVVMPGMDGVT 736 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR P +KV+ I+G++ + L KPF L+ L V +++ Sbjct: 737 LARFVRMERPAIKVILISGYSEDVARDGIDPDAGIHFLPKPFSLKQLAGAVKQVM 791 >gi|239828616|ref|YP_002951240.1| response regulator receiver protein [Geobacillus sp. WCH70] gi|239808909|gb|ACS25974.1| response regulator receiver protein [Geobacillus sp. WCH70] Length = 120 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + + GY NG A + VR+ L+L D+ +P MD Sbjct: 1 MGSKILIVDDQYGIRILLNEVFQREGYTTYQAANGIQALEIVRKHQPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIE+ +R E+DPD+KV+ +T + + + ++ +KPF + DL V + L Sbjct: 61 GIEILKRLKEIDPDIKVIIMTAYGELDMIQETKELGAIMHFAKPFDIDDLREAVKKHLV 119 >gi|225627514|ref|ZP_03785551.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|225617519|gb|EEH14564.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] Length = 945 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 826 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGGEALEIMEELGGEVDIVVSDVVMPEMDGP 885 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 886 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 941 >gi|261758225|ref|ZP_06001934.1| sensory box histidine kinase/response regulator [Brucella sp. F5/99] gi|261738209|gb|EEY26205.1| sensory box histidine kinase/response regulator [Brucella sp. F5/99] Length = 891 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 772 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGGEALEIMEELGGEVDIVVSDVVMPEMDGP 831 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 832 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 887 >gi|260168745|ref|ZP_05755556.1| PAS domain-containing protein [Brucella sp. F5/99] Length = 898 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGGEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|149923176|ref|ZP_01911589.1| EAL domain/GGDEF domain protein [Plesiocystis pacifica SIR-1] gi|149815950|gb|EDM75466.1| EAL domain/GGDEF domain protein [Plesiocystis pacifica SIR-1] Length = 402 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 12/117 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ +R+ L +AL AG+E V ++G +A + E F ++LTDI MP++DGIE Sbjct: 17 RVLVADDEPQLRKTLERALDFAGFEAVVVHDGKAAERALSETNFDVILTDIGMPDLDGIE 76 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEV 114 L R D D+ V+ +TG NPD + A K + KPF +++++ +V Sbjct: 77 LLRLVRAKDLDVPVILMTG------NPDYESAAKAVELGAMKYVVKPFRVQEIIEQV 127 >gi|88607151|ref|YP_505172.1| sensor histidine kinase/response regulator [Anaplasma phagocytophilum HZ] gi|88598214|gb|ABD43684.1| Sensor histidine kinase/response regulator CckA [Anaplasma phagocytophilum HZ] Length = 814 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+D +R F KAL + G+ V+ N+G A + ++++D+VMP G E Sbjct: 693 VLLVEDEDPVRAFTSKALSRRGFNVIDTNSGKDAIIAASDNHIDVIISDVVMPGTSGPET 752 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 ++ P+ KV+F++G+A + ++ LSKPF L+ L+ +V+ L K Sbjct: 753 VNEVLKIQPNTKVIFVSGYAEEVFHQQHKGIDFNEILFLSKPFTLKQLLQKVDEALACK 811 >gi|308272777|emb|CBX29381.1| hypothetical protein N47_J03620 [uncultured Desulfobacterium sp.] Length = 178 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 64/113 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ +R L L +EVV+ +G A + +RE F L+L+D++MP+MDGIE Sbjct: 26 RVLVVDDEEGIRDILADYLTMMDHEVVTAIDGQDALNNLREGHFDLILSDLIMPKMDGIE 85 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L ++A +D + + ITG V ++ L+KPF D+ +NR Sbjct: 86 LLKQALNIDDKIVFIMITGHPTVQTAVEAIKEGAYDYLTKPFRFDDVQLRINR 138 >gi|168704997|ref|ZP_02737274.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 378 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 + +L+ +DD +RR + L + GY V+ +GA A + + P LLLTD+VMPEM Sbjct: 256 TETVLVVDDDPGVRRVVTLLLSQKGYAVLDAGSGAEALELLAAANRPVHLLLTDVVMPEM 315 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G LA R L P ++V+F++G++ AL A A +L+KPF L V Sbjct: 316 SGGVLAERVRALRPGVRVLFVSGYSEDALVERGLAQATATLLAKPFTATALTRAVR 371 >gi|85713981|ref|ZP_01044970.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85699107|gb|EAQ36975.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 939 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ ED+ +R +++ L GY +GA+ ++ ++P LLLTDI +P M+G Sbjct: 821 ETVLVVEDEPVVRGIIVEMLHDQGYVTREAADGAAGLRILQLDKPVDLLLTDIGLPGMNG 880 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +LA +A E+ PDLK++F+TG+A A N +++KPF L L + +++ Sbjct: 881 RQLADQAREIRPDLKILFMTGYADNAANAKGFLRPGMDMITKPFDLCHLSQRIRDIIS 938 >gi|170721123|ref|YP_001748811.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759126|gb|ACA72442.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 691 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-MD 60 Q+I+L ED +R + + L + GY V + GA+A + R EP LLL+DI +PE + Sbjct: 569 QRIVLVEDQPALRLVISEVLQEQGYLVEAFETGAAALAHLQRSEPPDLLLSDIGLPEGPN 628 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A R + P+LKV+FITG+ A D + A VL KPF L L V++LL Sbjct: 629 GRQVAERYRQQYPNLKVLFITGYDNSAALGDGQLLQGAHVLGKPFELDVLAECVHQLL 686 >gi|116623716|ref|YP_825872.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226878|gb|ABJ85587.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 822 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +L+ ED +++RRF AL GY V++ +GA A E LLLTDIVMP ++G Sbjct: 567 SETVLVVEDQEEVRRFAAGALRTYGYRVIAVESGAEALAVCEREAIDLLLTDIVMPNLNG 626 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 ELA ++ P +KV+F++ +A + + +N + KPF L +V R L Sbjct: 627 RELAELVSKRWPGIKVLFMSAYAG-GTDMNGGVLRNGTAFIQKPFLAVQLAEKVRRTL 683 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ +R FL AL + GYEV+ +G A ++++ LL+TD+VMPE +GIE Sbjct: 691 RILIADDEAGVRGFLRAALEQQGYEVMEAADGKQAIRQIQDNAVDLLITDLVMPEQEGIE 750 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + + ++ I+G + VLSKP + L++ V +L Sbjct: 751 TIRALHKEMAGIGIIAISGAFGGQFLRSARLLGAHAVLSKPVAVNALLSTVADVL 805 >gi|260575598|ref|ZP_05843596.1| histidine kinase [Rhodobacter sp. SW2] gi|259022241|gb|EEW25539.1| histidine kinase [Rhodobacter sp. SW2] Length = 767 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL GY V+ ++ A K E+P + +TD+VMP MDG Sbjct: 651 VLLVEDEAPVRAFASRALRLRGYTVLEADSAEEAL-KTLEDPTLDVDIFVTDVVMPGMDG 709 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +A EL P+++V+F++G+A L+ + N+ L KPF L DL V Sbjct: 710 PSWVSKALELRPNVRVVFMSGYAEECLSESQSRVPNSVFLPKPFSLNDLTETV 762 >gi|316932839|ref|YP_004107821.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315600553|gb|ADU43088.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 881 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY+V+ +NG A ++ L+++D+VMPEMDG Sbjct: 763 ILLVEDEEGLRSLNARGLRSRGYQVIEASNGVEALEEFDAHGGEVDLVVSDVVMPEMDGP 822 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + +PDLK++F++G+A A + + P+N + L+KPF L LV +V + Sbjct: 823 TLLKAMRGRNPDLKIIFVSGYAEDAF--EKSLPENEQFAFLAKPFALSALVAKVKETM 878 >gi|241518447|ref|YP_002979075.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862860|gb|ACS60524.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 727 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDGI 62 IL+ EDD D+R + +++L + GY+++ +G +A + P +L+ TD+V+P M G Sbjct: 610 ILVVEDDPDVRAYSVESLRELGYQILEAKDGPTALQLLAAHGPVNLIFTDVVLPGGMSGA 669 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ RA E+ P++K +F TG++ A+ K +L+KPF DL + +L Sbjct: 670 DVVARAREMYPEMKALFTTGYSRNAIVHHGRLDKGVNLLTKPFSFEDLAVRIRDVL 725 >gi|218780170|ref|YP_002431488.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218761554|gb|ACL04020.1| Response regulator receiver domain protein (CheY-like) [Desulfatibacillum alkenivorans AK-01] Length = 122 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ +R L + L GYEV ++G +A + REEPF +++TD+ MPE + Sbjct: 1 MKSRILVVDDESMIRSMLRQVLESDGYEVYEASDGMAAQNIYREEPFDVIITDLAMPERN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 G+E+ + P +K++ ++ A+ D + +N + KPF + DL N V L Sbjct: 61 GLEVIDEVSRSFPHVKIIAMSANASGGGGVDLASARNKGAHRTFPKPFGMGDLKNAVKAL 120 Query: 118 LT 119 L Sbjct: 121 LA 122 >gi|330875149|gb|EGH09298.1| response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 125 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDEPLILMLLADYLSGEGYRVLQAENGEQAFEILATKPHLDLMITDYRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L +++ RLL Sbjct: 69 QIAEPAVMLRPELKVIFISGYPAEILDSGSAIALKAPILAKPFTMETLQSQIQRLLA 125 >gi|261214026|ref|ZP_05928307.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260915633|gb|EEX82494.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 906 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 787 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 846 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 847 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 902 >gi|261218622|ref|ZP_05932903.1| multi-sensor hybrid histidine kinase [Brucella ceti M13/05/1] gi|260923711|gb|EEX90279.1| multi-sensor hybrid histidine kinase [Brucella ceti M13/05/1] Length = 657 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 538 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 597 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 598 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 653 >gi|239831952|ref|ZP_04680281.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824219|gb|EEQ95787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 858 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 739 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEVMEELGGEVDIVVSDVVMPEMDGP 798 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 799 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 854 >gi|254719113|ref|ZP_05180924.1| PAS domain-containing protein [Brucella sp. 83/13] Length = 898 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|253701818|ref|YP_003023007.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776668|gb|ACT19249.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 798 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + ILL ED+ +R + L GY V++ + A A + +E+ LL TD+VMPEM G Sbjct: 638 KTILLVEDNAMIREVAEELLSSFGYAVLAAQSPARALELAKEQQTIDLLATDVVMPEMTG 697 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + E P L V++I+G++A L D + ++A L+KPF L + ++ +L Sbjct: 698 PELYEKLLENYPGLPVLYISGYSAGLLPLDESQRQDAIFLAKPFTLEQFMGKIGEML 754 >gi|162451871|ref|YP_001614238.1| hypothetical protein sce3598 [Sorangium cellulosum 'So ce 56'] gi|161162453|emb|CAN93758.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 545 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 +L+ +D+D + + LG+ GY ++ A + + LLLTD++MPEM G Sbjct: 426 VLVTDDEDAVVALASRILGQNGYTTLTARGPREALRVCEAQRGRVDLLLTDVLMPEMSGG 485 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA R +L PD+KV+F++G+ AL+ A VL KPF L+ V R L Sbjct: 486 ELAARLVKLRPDMKVLFMSGYTGDALDGPFAVRPGAAVLGKPFTAESLLRAVRRAL 541 >gi|254716821|ref|ZP_05178632.1| PAS domain-containing protein [Brucella ceti M13/05/1] Length = 664 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 545 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 604 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 605 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 660 >gi|167033152|ref|YP_001668383.1| response regulator receiver protein [Pseudomonas putida GB-1] gi|325277543|ref|ZP_08143138.1| response regulator receiver protein [Pseudomonas sp. TJI-51] gi|166859640|gb|ABY98047.1| response regulator receiver protein [Pseudomonas putida GB-1] gi|324097324|gb|EGB95575.1| response regulator receiver protein [Pseudomonas sp. TJI-51] Length = 125 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ +R L L GY V+ +G A+ + +P L++TD +P + G+ Sbjct: 9 VLVVEDEPAIRMILRDYLAGEGYHVLVAEDGEQAFAILASKPHLDLMVTDFRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+A A +L PDLKV+FI+G+ A L S + A +L+KPF L L ++ LL Sbjct: 69 EIAEPAVKLRPDLKVIFISGYPAEILESGSPITRKAPILAKPFDLDTLHEQIQALL 124 >gi|306838397|ref|ZP_07471242.1| PAS domain-containing protein [Brucella sp. NF 2653] gi|306406537|gb|EFM62771.1| PAS domain-containing protein [Brucella sp. NF 2653] Length = 857 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 738 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 797 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 798 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 853 >gi|254710122|ref|ZP_05171933.1| PAS domain-containing protein [Brucella pinnipedialis B2/94] Length = 667 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 548 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 607 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 608 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 663 >gi|17987230|ref|NP_539864.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|17982903|gb|AAL52128.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] Length = 767 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 648 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 707 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 708 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 763 >gi|323703413|ref|ZP_08115061.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323531594|gb|EGB21485.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 454 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 62/110 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D++ M L K L + GY+V++ G + +R E SL++ D+ MPEMD Sbjct: 1 MTRKILVIDDEEHMCWALEKGLRQEGYQVLTATRGKQGLELIRNEVPSLVILDLKMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E+ RA E+ P L V+ IT + ++ ++KPF L +L Sbjct: 61 GLEVLVRAKEMMPKLPVIMITAHGTIDTAIEAMKLGATDYITKPFDLDEL 110 >gi|23501918|ref|NP_698045.1| sensory box histidine kinase/response regulator [Brucella suis 1330] gi|62289961|ref|YP_221754.1| sensory box histidine kinase/response regulator [Brucella abortus bv. 1 str. 9-941] gi|256369463|ref|YP_003106971.1| sensory box histidine kinase/response regulator [Brucella microti CCM 4915] gi|23347861|gb|AAN29960.1| sensory box histidine kinase/response regulator [Brucella suis 1330] gi|62196093|gb|AAX74393.1| sensory box histidine kinase/response regulator [Brucella abortus bv. 1 str. 9-941] gi|255999623|gb|ACU48022.1| sensory box histidine kinase/response regulator [Brucella microti CCM 4915] Length = 945 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 826 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 885 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 886 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 941 >gi|261314235|ref|ZP_05953432.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis M163/99/10] gi|261303261|gb|EEY06758.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis M163/99/10] Length = 857 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 738 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 797 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 798 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 853 >gi|254693752|ref|ZP_05155580.1| PAS domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 898 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|163868491|ref|YP_001609700.1| sensor histidine kinase [Bartonella tribocorum CIP 105476] gi|161018147|emb|CAK01705.1| sensor histidine kinase [Bartonella tribocorum CIP 105476] Length = 848 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V+ +G A + E+ ++++D+VMPEMDG Sbjct: 731 VLLVEDEDAVRMGGVRALQMRGYTVLEAASGVEALSVLEEKKGAVDIIVSDVVMPEMDGP 790 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLLT 119 L + + PD+K +F++G+A A N P++A LSKPF L+ L V L+ Sbjct: 791 TLLKEVRKKYPDIKFLFVSGYAKDAFA--KNLPQDAVFGFLSKPFTLKQLALTVKETLS 847 >gi|148559727|ref|YP_001258977.1| sensory box histidine kinase/response regulator [Brucella ovis ATCC 25840] gi|148370984|gb|ABQ60963.1| sensory box histidine kinase/response regulator [Brucella ovis ATCC 25840] Length = 945 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 826 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 885 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 886 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 941 >gi|306840523|ref|ZP_07473282.1| PAS domain-containing protein [Brucella sp. BO2] gi|306289538|gb|EFM60756.1| PAS domain-containing protein [Brucella sp. BO2] Length = 898 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|260566424|ref|ZP_05836894.1| sensory box histidine kinase/response regulator [Brucella suis bv. 4 str. 40] gi|260155942|gb|EEW91022.1| sensory box histidine kinase/response regulator [Brucella suis bv. 4 str. 40] Length = 891 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 772 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 831 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 832 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 887 >gi|260545291|ref|ZP_05821032.1| sensory box histidine kinase/response regulator [Brucella abortus NCTC 8038] gi|260564042|ref|ZP_05834528.1| sensory box histidine kinase/response regulator [Brucella melitensis bv. 1 str. 16M] gi|260761820|ref|ZP_05874163.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|261325131|ref|ZP_05964328.1| multi-sensor hybrid histidine kinase [Brucella neotomae 5K33] gi|265994957|ref|ZP_06107514.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|265998171|ref|ZP_06110728.1| multi-sensor hybrid histidine kinase [Brucella ceti M490/95/1] gi|265999465|ref|ZP_05466499.2| sensory box histidine kinase/response regulator [Brucella melitensis bv. 2 str. 63/9] gi|260096698|gb|EEW80573.1| sensory box histidine kinase/response regulator [Brucella abortus NCTC 8038] gi|260154058|gb|EEW89150.1| sensory box histidine kinase/response regulator [Brucella melitensis bv. 1 str. 16M] gi|260672252|gb|EEX59073.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|261301111|gb|EEY04608.1| multi-sensor hybrid histidine kinase [Brucella neotomae 5K33] gi|262552639|gb|EEZ08629.1| multi-sensor hybrid histidine kinase [Brucella ceti M490/95/1] gi|262766070|gb|EEZ11859.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263094112|gb|EEZ18034.1| sensory box histidine kinase/response regulator [Brucella melitensis bv. 2 str. 63/9] Length = 906 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 787 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 846 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 847 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 902 >gi|297248360|ref|ZP_06932078.1| sensory box histidine kinase/response regulator [Brucella abortus bv. 5 str. B3196] gi|297175529|gb|EFH34876.1| sensory box histidine kinase/response regulator [Brucella abortus bv. 5 str. B3196] Length = 945 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 826 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 885 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 886 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 941 >gi|294852372|ref|ZP_06793045.1| two-component sensor histidine kinase [Brucella sp. NVSL 07-0026] gi|294820961|gb|EFG37960.1| two-component sensor histidine kinase [Brucella sp. NVSL 07-0026] Length = 843 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 724 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 783 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 784 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 839 >gi|326409060|gb|ADZ66125.1| sensory box histidine kinase/response regulator [Brucella melitensis M28] gi|326538767|gb|ADZ86982.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 906 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 787 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 846 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 847 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 902 >gi|306843910|ref|ZP_07476505.1| PAS domain-containing protein [Brucella sp. BO1] gi|306275665|gb|EFM57389.1| PAS domain-containing protein [Brucella sp. BO1] Length = 857 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 738 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 797 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 798 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 853 >gi|303248673|ref|ZP_07334927.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio fructosovorans JJ] gi|302489929|gb|EFL49855.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio fructosovorans JJ] Length = 467 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ EDD R L++AL GY+ V + + R E F L++TD+++P MD Sbjct: 1 MSARILVIEDDAAFRAMLLEALSSKGYDPVGVGSAEEGVARARAEAFDLVITDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE R E P +V+ +TG++A D+ +KPF L ++ + R L Sbjct: 61 GIEGLSRIKEASPQSEVIVMTGYSAREKALDAVRLGAYDFFTKPFSLAEMEVVIRRAL 118 >gi|261752341|ref|ZP_05996050.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 5 str. 513] gi|261742094|gb|EEY30020.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 5 str. 513] Length = 906 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 787 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 846 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 847 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 902 >gi|161618989|ref|YP_001592876.1| PAS domain-containing protein [Brucella canis ATCC 23365] gi|161335800|gb|ABX62105.1| PAS domain S-box [Brucella canis ATCC 23365] Length = 898 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|265984104|ref|ZP_06096839.1| multi-sensor hybrid histidine kinase [Brucella sp. 83/13] gi|264662696|gb|EEZ32957.1| multi-sensor hybrid histidine kinase [Brucella sp. 83/13] Length = 911 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 792 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 851 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 852 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 907 >gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1044 Score = 70.5 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 5/114 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+AEDD+ + L K G+EVV+ +NG +++ E+ F L+L DI MPEMDGI Sbjct: 921 RKILVAEDDEVNLFAVRNLLTKNGHEVVTAHNGHEVLERIMEQDFDLVLMDIQMPEMDGI 980 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLV 111 E R R TE K + I A A+N D + V +SKPF ++ L+ Sbjct: 981 EATRRIRVTEQATGKKPVPIIAMTAYAMNGDREKLLDKGVDGYVSKPFSIKTLM 1034 >gi|265988706|ref|ZP_06101263.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis M292/94/1] gi|264660903|gb|EEZ31164.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis M292/94/1] Length = 891 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 772 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 831 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 832 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 887 >gi|261317672|ref|ZP_05956869.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis B2/94] gi|261296895|gb|EEY00392.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis B2/94] Length = 657 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 538 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 597 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 598 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 653 >gi|260754774|ref|ZP_05867122.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 6 str. 870] gi|260883793|ref|ZP_05895407.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 9 str. C68] gi|260674882|gb|EEX61703.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 6 str. 870] gi|260873321|gb|EEX80390.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 9 str. C68] Length = 906 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 787 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 846 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 847 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 902 >gi|302382317|ref|YP_003818140.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192945|gb|ADL00517.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 1083 Score = 70.5 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 71/118 (60%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MD 60 + +L+ +D++ +R + + LG+AGY V+ +G S D +R + LL++D+ +P M+ Sbjct: 960 ETVLVIDDEETVRMLVAEVLGEAGYNVIEAPDGPSGLDILRSDRRIDLLVSDVGLPGGMN 1019 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A PDLKV+FITG+A A + +VL+KPF + DL +V+ ++ Sbjct: 1020 GRQVADAARVTRPDLKVLFITGYAENAAVGNGLLAPGMEVLTKPFVMGDLAAKVHDMI 1077 >gi|260757997|ref|ZP_05870345.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 4 str. 292] gi|261222207|ref|ZP_05936488.1| multi-sensor hybrid histidine kinase [Brucella ceti B1/94] gi|261321880|ref|ZP_05961077.1| multi-sensor hybrid histidine kinase [Brucella ceti M644/93/1] gi|261755000|ref|ZP_05998709.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 3 str. 686] gi|265991120|ref|ZP_06103677.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|260668315|gb|EEX55255.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 4 str. 292] gi|260920791|gb|EEX87444.1| multi-sensor hybrid histidine kinase [Brucella ceti B1/94] gi|261294570|gb|EEX98066.1| multi-sensor hybrid histidine kinase [Brucella ceti M644/93/1] gi|261744753|gb|EEY32679.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 3 str. 686] gi|263001904|gb|EEZ14479.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 1 str. Rev.1] Length = 891 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 772 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 831 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 832 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 887 >gi|28869903|ref|NP_792522.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213967058|ref|ZP_03395208.1| response regulator [Pseudomonas syringae pv. tomato T1] gi|301385243|ref|ZP_07233661.1| response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063298|ref|ZP_07254839.1| response regulator [Pseudomonas syringae pv. tomato K40] gi|302130184|ref|ZP_07256174.1| response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853148|gb|AAO56217.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213928380|gb|EEB61925.1| response regulator [Pseudomonas syringae pv. tomato T1] gi|330967658|gb|EGH67918.1| response regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331014367|gb|EGH94423.1| response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 125 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDEPLILMLLADYLSGEGYRVLQAENGEQAFEILATKPHLDLMITDYRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L +++ RLL Sbjct: 69 QIAEPAVMLRPELKVIFISGYPAEILDSGSPIALKAPILAKPFTMETLQSQIQRLLA 125 >gi|254701787|ref|ZP_05163615.1| PAS domain-containing protein [Brucella suis bv. 5 str. 513] Length = 898 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|163843307|ref|YP_001627711.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|189024203|ref|YP_001934971.1| sensory box histidine kinase/response regulator [Brucella abortus S19] gi|225852542|ref|YP_002732775.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|237815464|ref|ZP_04594462.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|254697403|ref|ZP_05159231.1| PAS domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|254704329|ref|ZP_05166157.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686] gi|254706771|ref|ZP_05168599.1| PAS domain-containing protein [Brucella pinnipedialis M163/99/10] gi|254714121|ref|ZP_05175932.1| PAS domain-containing protein [Brucella ceti M644/93/1] gi|254730301|ref|ZP_05188879.1| PAS domain-containing protein [Brucella abortus bv. 4 str. 292] gi|256044696|ref|ZP_05447600.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256061128|ref|ZP_05451282.1| PAS domain-containing protein [Brucella neotomae 5K33] gi|256113590|ref|ZP_05454410.1| PAS domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256159755|ref|ZP_05457502.1| PAS domain-containing protein [Brucella ceti M490/95/1] gi|256255017|ref|ZP_05460553.1| PAS domain-containing protein [Brucella ceti B1/94] gi|163674030|gb|ABY38141.1| PAS domain S-box [Brucella suis ATCC 23445] gi|189019775|gb|ACD72497.1| sensory box histidine kinase/response regulator [Brucella abortus S19] gi|225640907|gb|ACO00821.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|237790301|gb|EEP64511.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] Length = 898 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|154253018|ref|YP_001413842.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156968|gb|ABS64185.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 840 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 ILL ED+D +R F +AL GY+V+ +G A V E L+++D+VMP MDG Sbjct: 722 ILLVEDEDAVRTFAARALQTRGYDVLQAESGEVALAVVEQYEGRIDLVVSDVVMPNMDGP 781 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +A+ + PD ++F++G+A A + + L KPF L+ L V +++ K Sbjct: 782 TMAKALKGMLPDTPIIFVSGYAEDAFAKSLDPSQEFHFLPKPFSLKQLAAAVKEVMSAK 840 >gi|256828819|ref|YP_003157547.1| Fis family two component sigma5-4 specific transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577995|gb|ACU89131.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfomicrobium baculatum DSM 4028] Length = 445 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 60/110 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD L+ LG GYEV + ++GA A +VRE + ++LTD+ M E+D Sbjct: 1 MTARILVVDDDRAHMTMLVAMLGSWGYEVDTADDGAMAVARVRERAYDVVLTDVRMAEVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE RR +P L V+ +T +++V + + L KP +L Sbjct: 61 GIEALRRIKSYNPYLPVLIMTAYSSVDVAVQALKAGALDYLHKPLDFEEL 110 >gi|254689267|ref|ZP_05152521.1| PAS domain-containing protein [Brucella abortus bv. 6 str. 870] gi|256257517|ref|ZP_05463053.1| PAS domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 898 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|220921165|ref|YP_002496466.1| response regulator receiver protein [Methylobacterium nodulans ORS 2060] gi|219945771|gb|ACL56163.1| response regulator receiver protein [Methylobacterium nodulans ORS 2060] Length = 127 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL +D++ +R FL + L G+ VV+ +G+ D++ E F L+LTDI MP MDGI Sbjct: 4 ILLVDDEESIRGFLKRGLEMDGHVVVTAVDGSDGLDRLIEADGAFDLMLTDIRMPLMDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A P L +M +TGFA + VL+KPF L D+ V R+L Sbjct: 64 ALALAAKRDYPGLTIMLMTGFADQRERARGLDAIVSDVLTKPFTLADMRVSVRRVL 119 >gi|256031617|ref|ZP_05445231.1| PAS domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 898 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 779 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEIMEELGGEVDIVVSDVVMPEMDGP 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 839 TLLRELRKTHPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 894 >gi|20257538|gb|AAM15932.1| NtrC [Gluconacetobacter diazotrophicus] Length = 482 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +ALG+AGY+V + A+ + V E L++TD+VMP+ +G++L Sbjct: 6 VLVADDDRSIRTVLSQALGRAGYQVRVTAHAATLWQWVEEGEGDLVITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R PDL+V+ ++ + + + + L KPF L++L++ V R L Sbjct: 66 IPRIKRARPDLRVVVMSAQSTLMTAVKATQRGAFEYLPKPFDLKELLSVVARAL 119 >gi|262198228|ref|YP_003269437.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262081575|gb|ACY17544.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 305 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++ILLAEDDD + + AL AG+ + NGA A D +R +L+ D++MPEMD Sbjct: 3 LKKRILLAEDDDAIVDLVTAALEGAGFARLRAENGARALDFLRIYTPDMLVLDVMMPEMD 62 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE A+ R EL ++ ++ +T + V D L KPF LR+ ++N LL Sbjct: 63 GIEAAQHIREDELLAEIPILMLTALSGVENKIDGLDAGADAYLPKPFDLREFKAQINALL 122 >gi|332559784|ref|ZP_08414106.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] gi|332277496|gb|EGJ22811.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] Length = 949 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ EDD +R L++ L +AG V +G +A ++ LLL D+ +P+M G Sbjct: 825 NIHVLVCEDDVIIRMNLVEGLKEAGCRVSQAGSGEAALSVLQHGAADLLLVDLGLPDMSG 884 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++LAR A L PDL ++F TG + V PD VL+KPF L++ V RL+ Sbjct: 885 VDLARAARALHPDLPILFATGDSRV---PDEEFRPRVAVLAKPFGDEALLDGVARLV 938 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 + ILL EDD+ +R L GY V+ + A V LL TD+VMP ++ Sbjct: 693 ETILLVEDDEQVRSTAAGLLQDLGYSVLQAKDADRALTIVESGARIDLLFTDVVMPGKLT 752 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + L P L V+F +G+ ++ +LSKP+ L ++ +L Sbjct: 753 SRQLAEKTRGLRPGLPVLFTSGYTQNSIVHGGRLDSGVHLLSKPYTQEALARKIREVL 810 >gi|209542667|ref|YP_002274896.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Gluconacetobacter diazotrophicus PAl 5] gi|209530344|gb|ACI50281.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Gluconacetobacter diazotrophicus PAl 5] Length = 482 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +ALG+AGY+V + A+ + V E L++TD+VMP+ +G++L Sbjct: 6 VLVADDDRSIRTVLSQALGRAGYQVRVTAHAATLWQWVEEGEGDLVITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R PDL+V+ ++ + + + + L KPF L++L++ V R L Sbjct: 66 IPRIKRARPDLRVVVMSAQSTLMTAVKATQRGAFEYLPKPFDLKELLSVVARAL 119 >gi|116625105|ref|YP_827261.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116228267|gb|ABJ86976.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 124 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +D+ +R L L AGY V + NG A + EE F LLL+D++MPEM+G Sbjct: 4 NSSILIVDDEPQIRNLLSFTLENAGYAVTTAANGRDAIAVLAEESFDLLLSDVMMPEMNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +LA+ P+ + ++G+ N + +P+ +++KPF R ++ V +LT Sbjct: 64 HQLAQWVASHHPETRTALMSGYDPGCRN-CAYSPR-CHLIAKPFQPRQVLAFVEEVLT 119 >gi|162148049|ref|YP_001602510.1| nitrogen assimilation regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786626|emb|CAP56208.1| putative nitrogen assimilation regulatory protein [Gluconacetobacter diazotrophicus PAl 5] Length = 482 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +ALG+AGY+V + A+ + V E L++TD+VMP+ +G++L Sbjct: 6 VLVADDDRSIRTVLSQALGRAGYQVRVTAHAATLWQWVEEGEGDLVITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R PDL+V+ ++ + + + + L KPF L++L++ V R L Sbjct: 66 IPRIKRARPDLRVVVMSAQSTLMTAVKATQRGAFEYLPKPFDLKELLSVVARAL 119 >gi|56478486|ref|YP_160075.1| sigma-54 dependent DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56314529|emb|CAI09174.1| Sigma-54 dependent DNA-binding response regulator [Aromatoleum aromaticum EbN1] Length = 464 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 63/118 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ IL+ +D+ R+ L LG+AGY + +G +A + + L L DI MP +D Sbjct: 1 MNRHILIVDDEALYRQLLTSRLGRAGYRLSEAADGEAALECAQHGGIDLALVDIKMPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ +R ELDP ++V+ +TG V + LSKP+ L +L V R L Sbjct: 61 GIEVLKRLKELDPLIEVVILTGHGNVDTAISAMKLGAFDYLSKPYKLTELDIVVERAL 118 >gi|77464885|ref|YP_354389.1| PAS sensor Signal tranduction histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389303|gb|ABA80488.1| PAS sensor Signal Tranduction Histidine Kinase [Rhodobacter sphaeroides 2.4.1] Length = 949 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ EDD +R L++ L +AG V +G +A ++ LLL D+ +P+M G Sbjct: 825 NIHVLVCEDDVIIRMNLVEGLTEAGCRVSQAGSGEAALSVLQHGAADLLLVDLGLPDMSG 884 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++LAR A L PDL ++F TG + V PD VL+KPF L++ V RL+ Sbjct: 885 VDLARAARALHPDLPILFATGDSRV---PDEEFRPRVAVLAKPFGDEALLDGVARLV 938 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 + ILL EDD+ +R L GY V+ + A V LL TD+VMP ++ Sbjct: 693 ETILLVEDDEQVRSTAAGLLQDLGYSVLQAKDADRALTIVESGARIDLLFTDVVMPGKLT 752 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + L P L V+F +G+ ++ +LSKP+ L ++ +L Sbjct: 753 SRQLAEKTRGLRPGLPVLFTSGYTQNSIVHGGRLDSGVHLLSKPYTQEALARKIREVL 810 >gi|126463727|ref|YP_001044841.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126105391|gb|ABN78069.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 949 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ EDD +R L++ L +AG V +G +A ++ LLL D+ +P+M G Sbjct: 825 NIHVLVCEDDVIIRMNLVEGLTEAGCRVSQAGSGEAALSVLQHGAADLLLVDLGLPDMSG 884 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++LAR A L PDL ++F TG + V PD VL+KPF L++ V RL+ Sbjct: 885 VDLARAARALHPDLPILFATGDSRV---PDEEFRPRVAVLAKPFGDEALLDGVARLV 938 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 + ILL EDD+ +R L GY V+ + A V LL TD+VMP ++ Sbjct: 693 ETILLVEDDEQVRSTAAGLLQDLGYSVLQAKDADRALTIVESGARIDLLFTDVVMPGKLT 752 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + L P L V+F +G+ ++ +LSKP+ L ++ +L Sbjct: 753 SRQLAEKTRGLRPGLPVLFTSGYTQNSIVHGGRLDSGVHLLSKPYTQEALARKIREVL 810 >gi|330809927|ref|YP_004354389.1| Response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378035|gb|AEA69385.1| putative Response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 125 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ EDD + L L GY V+ NGA A++ + +P +++TD +P + G+ Sbjct: 9 VLIVEDDPSILMVLSAYLSGEGYRVLRAENGAQAFEILASKPHLDMMITDFRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A +L P+LKV+FI+G+A + DS + A +L KPF L +L + +L+ Sbjct: 69 QIAEPAVKLRPELKVIFISGYAQEVRDTDSPITRKAPILDKPFDLDELQAIMQSMLS 125 >gi|298291767|ref|YP_003693706.1| two component, sigma54 specific, transcriptional regulator, Fis family [Starkeya novella DSM 506] gi|296928278|gb|ADH89087.1| two component, sigma54 specific, transcriptional regulator, Fis family [Starkeya novella DSM 506] Length = 481 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 67/115 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV SC N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ P+L V+ ++ ++ + L KPF L++L++ V R L+ Sbjct: 66 LPRIKKVRPELPVIVMSAQNTFMTAIRASEKGAYEYLPKPFDLKELISIVGRALS 120 >gi|168698023|ref|ZP_02730300.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 969 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 ++ +LLAED+D +RR L +AGY V+ ++G A + E P LL TD+VMP M Sbjct: 847 SETVLLAEDEDGVRRLAKMVLQRAGYTVLEAHHGGEALRICEQHEGPIHLLATDVVMPNM 906 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + A R + P++KV+F++G+ + L KPF L +V +L Sbjct: 907 GGRQAAERLRAMRPEMKVLFLSGYTDDTVVRHGVLEAEVAFLQKPFSPDALAQKVREVL 965 >gi|170721291|ref|YP_001748979.1| response regulator receiver protein [Pseudomonas putida W619] gi|169759294|gb|ACA72610.1| response regulator receiver protein [Pseudomonas putida W619] Length = 125 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ +R L L GY V+ +G A+ + +P L++TD +P + G+ Sbjct: 9 VLVVEDEPAIRMILRDYLAGEGYHVLVAEDGEQAFAILASKPHLDLMVTDFRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+A A +L PDLKV+FI+G+ A L S + A +L+KPF L L ++ LL Sbjct: 69 EIAEPAVKLRPDLKVIFISGYPAEILESGSPIARKAPILAKPFDLDTLHKQIQDLL 124 >gi|309792564|ref|ZP_07687026.1| histidine kinase [Oscillochloris trichoides DG6] gi|308225378|gb|EFO79144.1| histidine kinase [Oscillochloris trichoides DG6] Length = 792 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 61/115 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ +DD + + L L + G+ V C + SA D + F L+LTD+ MP +G Sbjct: 673 NLNLLVVDDDRRIGQSLQVLLERIGHSVTICTDALSALDSYKSRRFDLVLTDLAMPGTNG 732 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 IEL R+ DP ++V+ TG L ++ A VL KPF L++++ + + Sbjct: 733 IELLRQLRSYDPKVRVLLFTGQVLPNLIEEAQRAGAAGVLRKPFELKEVLGAIQQ 787 >gi|304312785|ref|YP_003812383.1| Transcriptional activator [gamma proteobacterium HdN1] gi|301798518|emb|CBL46748.1| Transcriptional activator [gamma proteobacterium HdN1] Length = 449 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD D+R + + L GY+V NG +A + +PFS++++D+ MP MDG +L Sbjct: 6 ILLVEDDADLRDAVSETLSLKGYDVEEAENGEAALTAMSAQPFSMVISDVNMPRMDGFQL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNR 116 R+ P + V+ +T + V A +N V L KPF + L+ V R Sbjct: 66 LRKIASEWPQIPVVIVTAYGNV--ENAVQAIRNGAVDFLEKPFSIEKLLETVAR 117 >gi|325917911|ref|ZP_08180084.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325535891|gb|EGD07714.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 951 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDI-VMPEMDGI 62 ILL ED+ +R + + L +AGY V+ + G++A +++R EP +L+TD+ + ++G Sbjct: 831 ILLVEDETAIRILISEVLTEAGYRVIEASEGSAAVERLRSLEPIDVLVTDVGLTGALNGR 890 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A + P L V+F+TG+AA A +VL+KPF DL V +LL Sbjct: 891 QVADAGRQYRPSLPVLFVTGYAATAAVGAGQLDDGMEVLTKPFLATDLKQRVAQLL 946 >gi|145219790|ref|YP_001130499.1| PAS/PAC sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145205954|gb|ABP36997.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 570 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 + ILL +D+D +RR K L GY V+S +G A + + E P +LLTD++MP M+ Sbjct: 453 ETILLVDDEDAVRRITGKFLESFGYRVLSAADGREALEVAGMYEGPIHMLLTDMIMPGMN 512 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL+R +K ++I+G+AA L+ D + + L KPF L ++V +L Sbjct: 513 GRELSRLLESQRSGVKTLYISGYAADILS-DDDGSSDVHFLGKPFSRSALSDKVRSVL 569 >gi|294013269|ref|YP_003546729.1| two-component system sensor sporulation kinase A [Sphingobium japonicum UT26S] gi|292676599|dbj|BAI98117.1| two-component system sensor sporulation kinase A [Sphingobium japonicum UT26S] Length = 800 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +LL ED+D +R +AL + GY+V++ N+G + + +E LL++D+VMP MDG Sbjct: 681 VLLVEDEDMVRAVAERALSRQGYKVLTANDGEQGLEVLAGDEKIDLLISDVVMPNMDGPS 740 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + RA PDL V+F++G+A L + N L KPF + L L ++ Sbjct: 741 MVARARATHPDLPVLFMSGYAEEQLRKSIDI-ANVAFLPKPFSVSQLAEAARDALAMR 797 >gi|308066967|ref|YP_003868572.1| sporulation initiation phosphotransferase F (stage 0 sporulation protein F) [Paenibacillus polymyxa E681] gi|297305202|gb|ADI24137.1| Spo0F [Paenibacillus polymyxa] gi|305856246|gb|ADM68034.1| Sporulation initiation phosphotransferase F (Stage 0 sporulation protein F) [Paenibacillus polymyxa E681] Length = 122 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 65/117 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +D + +R L++ G GYE NG A + V +EP L+L D+ +P MDG Sbjct: 3 KKKVLIVDDQNGIRILLMEVFGSEGYETFQAANGKIALEIVEKEPPDLVLLDMKIPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ + ++PD+KV+ +T + + + ++ +KPF + ++ VN+ L Sbjct: 63 LEILKHLKTMNPDIKVIMMTAYGELDMIKEATELGALMHFTKPFDIDEMRIAVNKQL 119 >gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 246 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 65/114 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ + + K+L +AGYEV +CN+G A D + E + L++ D+ +P MDG+E Sbjct: 22 KLLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELYDLIVLDLNLPGMDGME 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + + + KV+ ++ + +A + + KPFHL++L V L Sbjct: 82 ILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSL 135 >gi|149926099|ref|ZP_01914362.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105] gi|149825387|gb|EDM84598.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105] Length = 1652 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 62/113 (54%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 +D+ L L AG+EV + A A ++ + F +LLTD+ +P MDGIEL +RA Sbjct: 2 DDEKPQLEALCSLLQDAGFEVKGFSEPAPALKHLKSQSFDVLLTDLRLPGMDGIELVQRA 61 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++DPDL + +TG ++ D+ + KPF + +L+ VNR + ++ Sbjct: 62 RQIDPDLSAVLMTGHGSIKTAVDAMKLGVLDYILKPFKVSELMPVVNRAIEVR 114 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEV---VSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 +LL +DD + L L +G+ V S +G + K E PF ++TD+ MP M Sbjct: 1530 VLLIDDDTKVLGALRDGLSASGHRVQIASSGPHGIELFTKAIAEGNPFDAVITDLGMPGM 1589 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 DG ++A ++ V +TG+ + P VL+KP Sbjct: 1590 DGRQVAEALKNINKQCPVTLLTGWGKQLDAQTAVIPHIDAVLAKP 1634 >gi|90420243|ref|ZP_01228151.1| response regulator receiver [Aurantimonas manganoxydans SI85-9A1] gi|90335577|gb|EAS49327.1| response regulator receiver [Aurantimonas manganoxydans SI85-9A1] Length = 141 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDG 61 +IL+AEDD +R + +ALG G+EV +G A D + R+ F +L+DI MP + G Sbjct: 3 RILIAEDDAGVRLLVSRALGLEGHEVTVAEDGEMALDVLVERDGAFDFVLSDIRMPCLTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IELA P L V+ +TG+A + V+ KPF + +L EV R+L Sbjct: 63 IELAHEIAASWPHLPVLLMTGYAEQMEAAEDLTAIIEGVVEKPFSIAELRREVARILA 120 >gi|319781342|ref|YP_004140818.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167230|gb|ADV10768.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 618 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + IL+ EDD +R +A+ + GY V+ +G A K+ E P +LL TDIVMP M+G Sbjct: 494 ETILVVEDDARVRVSTTEAIRELGYTVIDAASGEEALQKLAENPKVALLFTDIVMPVMNG 553 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A P LKV+F TGF A+ + + L+KPF + L ++ +L Sbjct: 554 RKLAEEAVARMPLLKVIFTTGFTRNAVVHNGVLDHDVHFLAKPFTIEQLAAKLRDVL 610 >gi|167033510|ref|YP_001668741.1| histidine kinase [Pseudomonas putida GB-1] gi|166859998|gb|ABY98405.1| histidine kinase [Pseudomonas putida GB-1] Length = 538 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 ++ +L+ EDD D+R L +AL G+ S N +R + LL++D+ +P M+ Sbjct: 418 SRHVLVVEDDPDVRHLLCQALRDDGFPCHSAANANEGLKVLRSAQAVDLLVSDVGLPGMN 477 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A L P L V+FITG+A A+ + ++ KPF L+ L +V ++L Sbjct: 478 GRQLAEIARSLRPHLPVLFITGYAETAMAREGFLGTGMHLICKPFELKQLQAQVTQIL 535 >gi|290891363|ref|ZP_06554424.1| hypothetical protein AWRIB429_1814 [Oenococcus oeni AWRIB429] gi|290479009|gb|EFD87672.1| hypothetical protein AWRIB429_1814 [Oenococcus oeni AWRIB429] Length = 224 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 51/79 (64%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD++ + + L G+EV+SC + AYD + F L++TD++MP +DG+E Sbjct: 3 KILVVEDDENFNSLVSRYLASNGFEVISCADAQKAYDALYNNLFDLIVTDVMMPGIDGVE 62 Query: 64 LARRATELDPDLKVMFITG 82 A+ +L+ ++ ++F+T Sbjct: 63 FAKTVRQLNENIPILFVTA 81 >gi|57640567|ref|YP_183045.1| chemotaxis response regulator [Thermococcus kodakarensis KOD1] gi|57158891|dbj|BAD84821.1| chemotaxis response regulator [Thermococcus kodakarensis KOD1] Length = 120 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR + K L +AG++VV +NG A +K ++ L+ DIVMPEMDGI Sbjct: 3 RVLVVDDAAFMRMLVKKILTQAGHQVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + ++DP+ K++ IT A ++ + KPF ++ EVNR+L+ Sbjct: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAPKVIEEVNRVLS 119 >gi|2098284|pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of Sporulation Response Regulator Spo0f From Bacillus Subtilis gi|2098285|pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of Sporulation Response Regulator Spo0f From Bacillus Subtilis gi|2098286|pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of Sporulation Response Regulator Spo0f From Bacillus Subtilis gi|49258471|pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f Complexed With Mn2+ gi|49258472|pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f Complexed With Mn2+ gi|49258473|pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f Complexed With Mn2+ Length = 124 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 Query: 121 KN 122 K+ Sbjct: 122 KS 123 >gi|118580328|ref|YP_901578.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503038|gb|ABK99520.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 994 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ ILL ED+ + + L K GY V+S N A A +E +LL+TD++MPE Sbjct: 872 SETILLVEDELAILNMVSMILSKQGYTVLSANTPAEAISMAKESSSEINLLITDVIMPET 931 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G EL+ + L P LK ++++G+ A A+ + + KPF L L +V +L Sbjct: 932 NGKELSNKLQSLYPQLKCLYMSGYTADAITQHGVLDEGVNFIQKPFSLPALATKVREVLD 991 Query: 120 IKN 122 K+ Sbjct: 992 KKS 994 >gi|221639885|ref|YP_002526147.1| sensor protein [Rhodobacter sphaeroides KD131] gi|221160666|gb|ACM01646.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 736 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL GY V+ N A + E+P + +TD+VMP MDG Sbjct: 620 VLLVEDEAPVRAFASRALRMRGYTVIEAENAEEAL-RALEDPALEVDVFVTDVVMPGMDG 678 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R+A + P+++V+F++G+A L + N+ L KPF L DL + V Sbjct: 679 PTWVRQALQQRPEVRVIFVSGYAEECLAESQSRIPNSVFLPKPFSLNDLTSTV 731 >gi|148654689|ref|YP_001274894.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566799|gb|ABQ88944.1| GAF sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 556 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 ++L+ +D+ M + L +AGY+V++ N+ A + + + F LLLTDI MP M G+ Sbjct: 20 RLLIVDDEQHMCDVCSRTLQRAGYDVLATNDPLVAIEALNNGQHFDLLLTDIKMPAMSGL 79 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LAR A E DP++ ++ +TG+A++ S A L+KPF L L V++ L Sbjct: 80 DLARIAREKDPEIAIIIMTGYASLENLHQSVRRGVADFLAKPFELEQLRLAVDQAL 135 >gi|91777525|ref|YP_552733.1| histidine kinase [Burkholderia xenovorans LB400] gi|91690185|gb|ABE33383.1| histidine kinase [Burkholderia xenovorans LB400] Length = 552 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ EDD ++R L+++L GY V +G + ++++++ LL+ D MP M+GI Sbjct: 437 KRVLVVEDDGEVRAMLVESLRMLGYTVTEAADGRAGLNRLQDDKPDLLMVDFAMPGMNGI 496 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ A +L DL V+ TG+A V ++ A K +L KPF L DL V Sbjct: 497 DVIAEARKLREDLPVILATGYADVDIS--GLAVKRCTILRKPFQLDDLARTV 546 >gi|219847587|ref|YP_002462020.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219541846|gb|ACL23584.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 123 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KILLAED++D++ L + V NNG A +++ + F LLL D++MP+MD Sbjct: 1 MSMKILLAEDEEDLQLIFKMVLEDENHTVTVVNNGYEALEQLANDTFDLLLIDVMMPQMD 60 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R E + + ++ +T +L+ P ++ KPF++ L++EV +L Sbjct: 61 GLELCERIQEHPVWRQIPILLLTAKPKSSLSLKDLPPMVRGLIEKPFNVFQLIDEVRAIL 120 >gi|316936206|ref|YP_004111188.1| response regulator receiver protein [Rhodopseudomonas palustris DX-1] gi|315603920|gb|ADU46455.1| response regulator receiver protein [Rhodopseudomonas palustris DX-1] Length = 126 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 12/126 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +IL+A+D++ MR + +A+G G+E V+ +G+ A + + + F LLLTDI MP MDG Sbjct: 3 RILIADDEESMRLLVARAIGLDGHETVTAEDGSEALEILTSQNGKFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 I LA P+L ++ +TGFA A L+ + V++KPF + D+ V Sbjct: 63 IALALAVARDFPELTILLMTGFADQRERAFGLDAIVH-----DVVTKPFSVADIRTAVAD 117 Query: 117 LLTIKN 122 LT K Sbjct: 118 ALTAKK 123 >gi|218777967|ref|YP_002429285.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759351|gb|ACL01817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1147 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ ILL ED++++ L + GY+ ++ A A ++ EP LLLTD+VMPEM Sbjct: 1026 DETILLVEDNENVLHLAGTILKRRGYKTLAAKGSAEALKIIQSSTEPIHLLLTDVVMPEM 1085 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G +L +A E+ P LKV++++G+ + + + + KPF + L +V ++L Sbjct: 1086 NGRDLYNKALEMLPALKVLYMSGYTDNVIAHRGVLDEGGQFIQKPFSGKGLAQKVRKILN 1145 Query: 120 IK 121 K Sbjct: 1146 EK 1147 >gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 237 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KILL EDD + F+ K L + G+EV NG Y F LL+ DI++PEM+G Sbjct: 5 NAKILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNG 64 Query: 62 IELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ + E + + ++F+T + +A+ +S A L+KPF +L+ V LL Sbjct: 65 LEICKAVREENTHVPILFLTALGSSENIAMGLNSGAD---DYLAKPFKFIELIARVKSLL 121 >gi|167013229|pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response Regulator Spo0f Mutant H101a From Bacillus Subtilis Length = 132 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRDAVKKYLPL 121 Query: 121 KN 122 K+ Sbjct: 122 KS 123 >gi|296159752|ref|ZP_06842574.1| histidine kinase [Burkholderia sp. Ch1-1] gi|295889966|gb|EFG69762.1| histidine kinase [Burkholderia sp. Ch1-1] Length = 552 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ EDD ++R L+++L GY V +G + ++++++ LL+ D MP M+GI Sbjct: 437 KRVLVVEDDGEVRAMLVESLRMLGYTVTEAADGRAGLNRLQDDKPDLLMVDFAMPGMNGI 496 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ A +L DL V+ TG+A V ++ A K +L KPF L DL V Sbjct: 497 DVIAEARKLREDLPVILATGYADVDIS--GLAVKRCTILRKPFQLDDLARTV 546 >gi|114777598|ref|ZP_01452579.1| sensor histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] gi|114552069|gb|EAU54586.1| sensor histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] Length = 133 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+++L+A+DD +R+ L+K + K G++V +G A + R F LL+TDI MPEM Sbjct: 11 NRRVLIADDDTAVRKLLVKIMTKKGFDVTDAEDGKRALELYRHAAGGFDLLMTDICMPEM 70 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G +L R D L ++ ++G+A L + A NA + KP R L ++ L + Sbjct: 71 NGCDLIREIRRQDQCLPIIVVSGYADPDLVIEIEAC-NATLFEKPIDFRALYQCLDSLQS 129 Query: 120 I 120 + Sbjct: 130 V 130 >gi|114777938|ref|ZP_01452852.1| sensor histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] gi|114551725|gb|EAU54277.1| sensor histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] Length = 760 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 N+ IL+ +DD +R L + GY+ V NG A + R+ L+ DI+MP + Sbjct: 633 NETILVVDDDKMVRESTCSILERMGYQPVPAKNGEQAVEIFTRRQAEIRLVFMDILMPGI 692 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +GIE RR +L PD+ V+F+TG+ L P+ A +N ++++KPF + L + + + L Sbjct: 693 NGIEATRRIRKLSPDMPVIFLTGYDRTQPLEPEVYA-ENTELINKPFRISMLSDSIQQAL 751 >gi|116491734|ref|YP_811278.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|116092459|gb|ABJ57613.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] Length = 224 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 51/79 (64%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD++ + + L G+EV+SC + AYD + F L++TD++MP +DG+E Sbjct: 3 KILVVEDDENFNSLVSRYLASNGFEVISCADAQKAYDALYNNLFDLIVTDVMMPGIDGVE 62 Query: 64 LARRATELDPDLKVMFITG 82 A+ +L+ ++ ++F+T Sbjct: 63 FAKTVRQLNENIPILFVTA 81 >gi|154248319|ref|YP_001419277.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Xanthobacter autotrophicus Py2] gi|154162404|gb|ABS69620.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Xanthobacter autotrophicus Py2] Length = 482 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 65/114 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV SC N A+ + V + L++TD+VMP+ + +L Sbjct: 8 ILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDENAFDL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL V+ ++ ++ + L KPF L++L++ V R L Sbjct: 68 LPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRAL 121 >gi|242277823|ref|YP_002989952.1| multi-sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120717|gb|ACS78413.1| multi-sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 645 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 40/100 (40%), Positives = 56/100 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ D+R L L GYEV S NG +A R P ++LTDI MP MDGIEL Sbjct: 17 ILLVDDEPDIRDLLGILLADLGYEVRSAENGEAACKSFRCNPPDIILTDIKMPGMDGIEL 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 R + P+++V+ I+G + L +S A ++KP Sbjct: 77 LRTVKKEAPEIEVIMISGHGDMQLAIESLKLNAADFITKP 116 >gi|163731784|ref|ZP_02139231.1| sensor kinase-like protein, putative [Roseobacter litoralis Och 149] gi|161395238|gb|EDQ19560.1| sensor kinase-like protein, putative [Roseobacter litoralis Och 149] Length = 765 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 ILL ED+ +R F +AL GY V+ ++ +A + +E ++ +TD+VMP MDG Sbjct: 649 ILLVEDEAPVRAFASRALRLRGYTVLEADSAEAALKTLEDETLNVDVFVTDVVMPGMDGP 708 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A + PD++V+F++G+A + N+ L KPF L DL + V+ L Sbjct: 709 SWVREALKDRPDVRVVFVSGYAEDSFGEAQMKIPNSVFLPKPFSLNDLTDTVHEQL 764 >gi|78046890|ref|YP_363065.1| putative two-component system response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294627006|ref|ZP_06705596.1| two-component system response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|78035320|emb|CAJ22965.1| putative two-component system response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292598668|gb|EFF42815.1| two-component system response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 122 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED +++R + +AL AG V + ++G SA VR+ P+ ++ +DI MP M G Sbjct: 6 RLLMVEDQEELRELIGEALRDAGISVDTADDGHSALRMVRDSGPYDVVFSDIRMPNGMSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ + +L P +V+ +GFA L P P L KP+ LR L++ Sbjct: 66 IELSEQVAQLLPQARVILASGFAKAQLPP---LPAQVDFLPKPYRLRQLID 113 >gi|118586652|ref|ZP_01544091.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] gi|118432904|gb|EAV39631.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] Length = 241 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 51/79 (64%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD++ + + L G+EV+SC + AYD + F L++TD++MP +DG+E Sbjct: 20 KILVVEDDENFNSLVSRYLASNGFEVISCADAQKAYDALYNNLFDLIVTDVMMPGIDGVE 79 Query: 64 LARRATELDPDLKVMFITG 82 A+ +L+ ++ ++F+T Sbjct: 80 FAKTVRQLNENIPILFVTA 98 >gi|158424710|ref|YP_001526002.1| nitrogen assimilation regulatory protein ntrC [Azorhizobium caulinodans ORS 571] gi|172046081|sp|Q04848|NTRC_AZOC5 RecName: Full=Nitrogen assimilation regulatory protein ntrC gi|158331599|dbj|BAF89084.1| nitrogen assimilation regulatory protein ntrC [Azorhizobium caulinodans ORS 571] Length = 480 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 65/114 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV SC N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL V+ ++ ++ + L KPF L++L++ V R L Sbjct: 66 LPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRAL 119 >gi|110679929|ref|YP_682936.1| sensor kinase-like protein, putative [Roseobacter denitrificans OCh 114] gi|109456045|gb|ABG32250.1| sensor kinase-like protein, putative [Roseobacter denitrificans OCh 114] Length = 776 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 ILL ED+ +R F +AL GY V+ ++ +A + +E ++ +TD+VMP MDG Sbjct: 660 ILLVEDEAPVRAFASRALRLRGYTVLEADSAEAALKTLEDETLNVDVFVTDVVMPGMDGP 719 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A + PD++V+F++G+A + N+ L KPF L DL + V+ L Sbjct: 720 SWVREALKNRPDVRVVFVSGYAEDSFGEAQMKIPNSVFLPKPFSLNDLTDTVHEQL 775 >gi|21242037|ref|NP_641619.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107438|gb|AAM36155.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 122 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED +++R + +AL AG V + ++G SA VR+ P+ ++ +DI MP M G Sbjct: 6 RLLMVEDQEELRELIGEALRDAGISVDTADDGHSALRMVRDSGPYDVVFSDIRMPNGMSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ + +L P +V+ +GFA L P P L KP+ LR L++ Sbjct: 66 IELSEQVAQLLPQARVILASGFAKAQLPP---LPAQVDFLPKPYRLRQLID 113 >gi|197117429|ref|YP_002137856.1| sensor histidine kinase response receiver, PAS/GAF domain-containing protein [Geobacter bemidjiensis Bem] gi|197086789|gb|ACH38060.1| sensor histidine kinase response receiver, PAS and GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 798 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + ILL ED+ +R + L GY V++ + A A + +E+ LL TD+VMPEM G Sbjct: 645 KTILLVEDNVMIREVAEELLSSFGYAVLAAESPARALELAKEQQRIDLLATDVVMPEMTG 704 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + E P L V++I+G++A L D + ++A L+KPF L + ++ +L Sbjct: 705 PELYEKLLENYPGLPVLYISGYSAGLLPLDESQRQDAIFLAKPFTLEQFMGKIGEML 761 >gi|110597466|ref|ZP_01385753.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110341010|gb|EAT59481.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 705 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + +L+ ED+ D+ L GY V++ + A R+ E +L+TD++MPEM+ Sbjct: 584 ETVLIVEDEPDILSLCKLMLENNGYAVLTASTPLEAIRITRQYAEKIHILMTDVIMPEMN 643 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELAR+ + PD+K ++++G+ + + + + +SKPF L L +V+ LL+ Sbjct: 644 GCELARKLQLIRPDIKTLYMSGYTSDIIAQEGVLEEGVGFISKPFSLSALTKKVDELLS 702 >gi|167013230|pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response Regulator Spo0f Mutant I90a From Bacillus Subtilis Length = 132 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 Query: 121 KN 122 K+ Sbjct: 122 KS 123 >gi|153009454|ref|YP_001370669.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151561342|gb|ABS14840.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 857 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V +G A + + E ++++D+VMPEMDG Sbjct: 738 VLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEVMAELGGEVDIVVSDVVMPEMDGP 797 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 798 TLLRELRKTYPDIKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLATTVKEML 853 >gi|218778199|ref|YP_002429517.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218759583|gb|ACL02049.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 458 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 61/115 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD+ R+ L + GY V + +G+ A D VRE P+ ++L D+ M EMDG Sbjct: 6 NADILVVDDDEGHRKTLYTVIKSWGYNVKTAEDGSIAVDMVREGPYDVILMDVRMAEMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 I+ + E +P + V+ +T +++V ++ L+KP DL + R Sbjct: 66 IQALKLIKEYNPSIPVLIMTAYSSVESAIEAMKTGAYDYLTKPLDFEDLRLTIER 120 >gi|148263394|ref|YP_001230100.1| response regulator receiver protein [Geobacter uraniireducens Rf4] gi|146396894|gb|ABQ25527.1| response regulator receiver protein [Geobacter uraniireducens Rf4] Length = 122 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 55/101 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD L + ++G V NG A ++E F L+LTD+ MP M+G+EL Sbjct: 6 ILLVDDDIITLNLLSECFRQSGMRVHCAENGEDALQMMQESTFVLMLTDLQMPGMNGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 AR+A EL PDL ++ TG + + AKVL KP+ Sbjct: 66 ARKARELAPDLHIVMCTGALTREVCELARKAGIAKVLRKPY 106 >gi|308270152|emb|CBX26764.1| hypothetical protein N47_A07930 [uncultured Desulfobacterium sp.] Length = 517 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + IL+AEDDD +R F+I L + GY+ + +G A K +E + SL++ D +MP+ +G Sbjct: 399 ETILVAEDDDSVRYFIIDILNRFGYKTIGAVDGEDAILKFKENKDISLVVMDTIMPKKNG 458 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ ++ PD+K++F++G++A + A ++KP + D + +V +L Sbjct: 459 KEVCDCIRKIKPDMKILFMSGYSAEIVANKGFLGYEADYINKPIYYEDFILKVRNVL 515 >gi|327479681|gb|AEA82991.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 678 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-MD 60 +++L+ +D+D++R + + L + G+ + NG +A D + + +P LL+TDI +P M+ Sbjct: 556 RRVLVVDDEDNIRTLVCEVLEEMGHRTLQAANGVTALDLLAKTDPIDLLITDIGLPGGMN 615 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + A RA PDLKV+ ITG+A AL + + +L KPF L L V LL Sbjct: 616 GHQFAERARLQLPDLKVLMITGYAEEALIAARPSTQAEDLLGKPFTLDVLQERVQTLL 673 >gi|144900135|emb|CAM76999.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 437 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 5/112 (4%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 L+AED++D+R+ + + L + G+ VV +G A V + E L+++DIVMP + G++L Sbjct: 323 LVAEDNEDVRQIIRRQLVELGFSVVEAESGDEAAALVEQIEDLHLVISDIVMPGLSGVDL 382 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ARR E P++ V+ I+GF+ S + VL+KP+ +DL+ + R Sbjct: 383 ARRVKETRPEISVVLISGFSF----DGSEDRSDLVVLAKPWEKQDLIEAIGR 430 >gi|329849359|ref|ZP_08264205.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] gi|328841270|gb|EGF90840.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] Length = 282 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 + +L+ +D+ +R+F AL + GY V+ + A + +P SLL TDIVMPE + Sbjct: 163 QEVVLVVDDEPAVRQFSCDALVELGYRVLEADGAVRALAMLEAQPEVSLLFTDIVMPETN 222 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A L PDLKV++ TG+ A+ + +++ KPF + L +V ++L Sbjct: 223 GRKLADAARVLRPDLKVLYTTGYTRNAVVHNGVLDPGVELIGKPFTIEQLAAKVRQVL 280 >gi|118588695|ref|ZP_01546103.1| sensor kinase [Stappia aggregata IAM 12614] gi|118438681|gb|EAV45314.1| sensor kinase [Stappia aggregata IAM 12614] Length = 839 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 ILL ED++ +R F +AL GY V +G A + + E L+++D+VMPEMDG Sbjct: 721 SILLVEDEEAVRAFGARALASRGYTVYEAGSGNEALEVMEETGGKIDLVVSDVVMPEMDG 780 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + PDLK++F++G+A A + + L KPF L+ L V +L Sbjct: 781 PTLLVELRKTRPDLKIIFVSGYAEDAFEENLPPGEQFFFLPKPFTLKQLATTVKDVL 837 >gi|68637881|emb|CAI36086.1| CheY-like response regulator receiver [Pseudomonas syringae pv. phaseolicola] Length = 143 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-E 58 M+Q ILL EDD +R + +A+ G+ V C + A ++ E E SL++TD+ MP Sbjct: 1 MSQNILLVEDDLLLRSVMAEAVSILGHAVTECASADQALTELEEMECCSLVITDVRMPGR 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DG+ L+R P+L V+ ++ + P P NAK L+KP HL L + LL Sbjct: 61 LDGLHLSRTIWSRWPELPVIIMSANTTI---PPGTLPSNAKFLTKPVHLSSLHEVIAELL 117 >gi|302343683|ref|YP_003808212.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640296|gb|ADK85618.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 892 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPEMD 60 ++ ILL EDDD +R F + L + GY V++ +G A E LLLTD++MP M Sbjct: 773 HETILLVEDDDVVRDFSGRMLERLGYVVLAAADGDDALRLAAATERVDLLLTDVIMPRMS 832 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARR + P++KV++I+G+ + L KP L L +V ++L Sbjct: 833 GKELARRLSAQRPEIKVLYISGYTDNVIAHHGVLDAGVAFLQKPAALHALAAKVRQVL 890 >gi|26990462|ref|NP_745887.1| response regulator receiver protein [Pseudomonas putida KT2440] gi|148547228|ref|YP_001267330.1| response regulator receiver protein [Pseudomonas putida F1] gi|24985434|gb|AAN69351.1|AE016572_7 response regulator [Pseudomonas putida KT2440] gi|148511286|gb|ABQ78146.1| response regulator receiver protein [Pseudomonas putida F1] gi|313498287|gb|ADR59653.1| Response regulator receiver protein [Pseudomonas putida BIRD-1] Length = 125 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ +R L L GY V+ +G A+ + +P L++TD +P + G+ Sbjct: 9 VLVVEDEPAIRMILRDYLAGEGYHVLVAEDGEQAFAILASKPHLDLMVTDFRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A A +L PDLKV+FI+G+ A L S + A +L+KPF L L ++ LL Sbjct: 69 DIAEPAVKLRPDLKVIFISGYPAEILESGSPITRKAPILAKPFDLDTLHEQIQSLL 124 >gi|312879108|ref|ZP_07738908.1| response regulator receiver protein [Aminomonas paucivorans DSM 12260] gi|310782399|gb|EFQ22797.1| response regulator receiver protein [Aminomonas paucivorans DSM 12260] Length = 123 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDDD +R+ + + L AGY V+ +G RE+ L+LTDI MP +G+ Sbjct: 2 KRILVIEDDDSVRKLIRRILEGAGYTVLEAPDGVQGVQVYREQRPDLVLTDIFMPGKEGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 E LDP+++++ ++G + LNP A K + LSKPF ++LV+ V + Sbjct: 62 ETILELGLLDPEVRIIAVSGGGNMGILNPLPMAAKLGALRTLSKPFSGKELVDLVEEIF 120 >gi|146281504|ref|YP_001171657.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145569709|gb|ABP78815.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 678 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-MD 60 +++L+ +D+D++R + + L + G+ + NG +A D + + +P LL+TDI +P M+ Sbjct: 556 RRVLVVDDEDNIRTLVCEVLEEMGHRTLQAANGVTALDLLAKTDPIDLLITDIGLPGGMN 615 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + A RA PDLKV+ ITG+A AL + + +L KPF L L V LL Sbjct: 616 GHQFAERARLQLPDLKVLMITGYAEEALIAARPSTQAEDLLGKPFTLDVLQERVQTLL 673 >gi|78224020|ref|YP_385767.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78195275|gb|ABB33042.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 1018 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ +R +++ L AGY V++ N AY+ + P F L+L+D++MP M+G Sbjct: 886 VLVVEDNRMVREMIVQMLKYAGYGVLAAPNPDEAYEIAQAAPYAFDLMLSDVIMPGMNGP 945 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R EL DL V+FI+G+ + + L KPF L+ +V++ L Sbjct: 946 ELFERLQELRLDLPVVFISGYTNEVKIHNCRLEEGGNFLPKPFTSEQLLRKVSQAL 1001 >gi|163794128|ref|ZP_02188101.1| isocitrate dehydrogenase [alpha proteobacterium BAL199] gi|159180742|gb|EDP65261.1| isocitrate dehydrogenase [alpha proteobacterium BAL199] Length = 659 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEP-FSLLLTDIVMPEMDGI 62 +LL ED+D +R F +AL GY V+ +G +A + + RE P LL+TD+VMP +DG Sbjct: 537 VLLVEDEDPVRLFAARALRSKGYHVIEARSGEAALELLEREAPHLDLLITDVVMPGIDGP 596 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + E P L V+ I+G++ AL + L KPF L+ L V R Sbjct: 597 TLFKIVRESRPGLPVVCISGYSEDALRQRIVDAEGVAFLPKPFSLKQLAVAVKR 650 >gi|320353481|ref|YP_004194820.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320121983|gb|ADW17529.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 830 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 8/121 (6%) Query: 3 QKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMP 57 + +LL EDD D+ R ++ ALG Y V+S + A E LLLTD++MP Sbjct: 708 ETLLLVEDDQGILDVARTMLDALG---YGVLSAQSPGEALRLAARHEGKIDLLLTDVIMP 764 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EM+G ELAR+ T + P +K+++++G+ A A+ + L KPF +L + R+ Sbjct: 765 EMNGRELARQLTAMRPGMKLLYMSGYTAEAIAQRGMLDQEVDFLQKPFRFEELSRIIRRV 824 Query: 118 L 118 L Sbjct: 825 L 825 >gi|327404314|ref|YP_004345152.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319822|gb|AEA44314.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 230 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD ++ + L GY+VV C+NG + + E+ F L + D++MP+ DG Sbjct: 6 KILLVEDDTNLGFVISDQLKSEGYQVVLCSNGMEGHMRFSEDEFHLCIFDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRLL 118 LA+ ++ ++ ++F+T A A+ D A NA L+KPF +L V LL Sbjct: 66 LAKEIRTMNQEVPIIFLT---AKAMTEDKVAGFNAGGDDYLTKPFSFDELSVRVKALL 120 >gi|254473053|ref|ZP_05086451.1| sigma-54 dependent response regulator [Pseudovibrio sp. JE062] gi|211957774|gb|EEA92976.1| sigma-54 dependent response regulator [Pseudovibrio sp. JE062] Length = 454 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 61/114 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD+DMR L++ L A Y VV + A + + E + +L++DI MP+M G +L Sbjct: 11 ILLVDDDEDMREALVEGLELADYHVVPFSRAEEALEHITHEFYGVLVSDIRMPKMGGFDL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A E+D L V+ ITG V L ++ KPF + LV V R L Sbjct: 71 MKAAFEIDSALPVVLITGHGDVPLAVEAMRAGAYDFKEKPFPVSGLVAVVERGL 124 >gi|78187210|ref|YP_375253.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78167112|gb|ABB24210.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 774 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMD 60 + +L+ ED +R F+ AL GY V + +SA +++ LLLTDI+MP M+ Sbjct: 643 ESVLVVEDSAVVRSFVADALRHYGYRVSEADGASSAKAAIKDGSCCPDLLLTDIIMPGMN 702 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL L P ++V+F++G+AA L + L KPF ++DL+ V+ L+ Sbjct: 703 GRELYLELRHLCPAMRVLFMSGYAASVLEKEGVPESGVGHLHKPFSVKDLIEGVSGLI 760 >gi|288918126|ref|ZP_06412483.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f] gi|288350508|gb|EFC84728.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f] Length = 679 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + I++ ED+ MR + L + GY V++ +G A ++ LLLTD+VMP++ Sbjct: 532 ETIMVVEDESAMRELTRRILARNGYRVITARSGPEAITMAQQLTADIHLLLTDVVMPQVL 591 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A R P L+V++++G+A AL + +L+KPF R L+++V +L Sbjct: 592 GREVAERICLGRPSLRVLYMSGYAYPALAQNGTLAPGLALLTKPFSERVLLSKVREVL 649 >gi|126735763|ref|ZP_01751508.1| sensor kinase-like protein, putative [Roseobacter sp. CCS2] gi|126714950|gb|EBA11816.1| sensor kinase-like protein, putative [Roseobacter sp. CCS2] Length = 768 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ ++ +A + + + + +TD++MP +DG Sbjct: 644 VLLVEDEAPVRAFATRALRLRGYTVLEADHAEAALEMLENDDLHVDIFVTDVIMPGLDGP 703 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-NRLL 118 R+A + PD KV+F++G+ A + A L KPF L+DL + V N+LL Sbjct: 704 TWVRQALKSRPDTKVVFVSGYPEDAFDDGQPEVLGATFLPKPFSLKDLTDAVQNQLL 760 >gi|209963476|ref|YP_002296391.1| Nitrogen assimilation regulatory protein NtrC [Rhodospirillum centenum SW] gi|209956942|gb|ACI97578.1| Nitrogen assimilation regulatory protein NtrC [Rhodospirillum centenum SW] Length = 482 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL + G+EV S N A+ + V E L++TD+VMP+ + Sbjct: 1 MGATILVADDDRAIRTVLTQALARLGHEVRSAGNAATLWRWVSEGQGDLVITDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVN 115 G++L R PDL+++ ++ A N A K A+ L KPF L++LV V Sbjct: 61 GLDLIPRIKRTRPDLRIIVMS-----AQNTLLTAVKAAERGAFDYLPKPFDLKELVAMVQ 115 Query: 116 RLLT 119 + L+ Sbjct: 116 KALS 119 >gi|320353332|ref|YP_004194671.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121834|gb|ADW17380.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 957 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL EDD + + L + GY V++ N A V ++P LLLTD++MPEM+ Sbjct: 839 ETILLVEDDPSLLDMCLTMLHRLGYSVLAANGPLEALRIVDQQPGAIDLLLTDVIMPEMN 898 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL+ R P LKV++++G+ A + L+KPF ++L ++ L Sbjct: 899 GRELSSRLLARHPGLKVLYMSGYTANVIAHHGVLDAGIHFLNKPFSSKELSVKIREAL 956 >gi|227535934|ref|ZP_03965983.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227244177|gb|EEI94192.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 225 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL ED+ + L L G+ V C+NG A+ +E+ + LLL D++MP MDG EL Sbjct: 4 ILYVEDEAGLAMILSDTLASHGFAVTHCDNGGEAFSTFQEQKYDLLLIDVMMPVMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 A++ +D D+ ++F+T + KPF + +L+ + L N Sbjct: 64 AKKVRGMDTDVPIIFLTARTQTEDVVAGFHLGANDYIKKPFKIEELIVRIEALFKYYN 121 >gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88] gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88] Length = 234 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 11/115 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ EDD+++ + + + K GYEV+ + G Y++ + E FSLL+ DI+MPEMD Sbjct: 1 MKERILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFIT-----GFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ L + L D+ ++ I+ G+ LN ++ ++KPF L +L Sbjct: 61 GLTLCKN-IRLTSDVPILIISAKNEDGYKVKGLNIGAD-----DYITKPFSLVEL 109 >gi|323714618|pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f gi|323714619|pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f Length = 126 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 4 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 64 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 123 Query: 121 KN 122 K+ Sbjct: 124 KS 125 >gi|255263006|ref|ZP_05342348.1| multi-sensor hybrid histidine kinase [Thalassiobium sp. R2A62] gi|255105341|gb|EET48015.1| multi-sensor hybrid histidine kinase [Thalassiobium sp. R2A62] Length = 770 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ ++ +A + ++++ + +TD++MP MDG Sbjct: 654 VLLVEDEAPVRAFASRALRLRGYTVLEADSAETALETLQDKSLEVDIFVTDVIMPGMDGP 713 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A PD KV+F++G+A A N+ L KPF L DL V + L Sbjct: 714 SWVREALVDRPDTKVVFVSGYAEDAFGEGQPDIPNSVFLPKPFSLNDLTTTVQKQL 769 >gi|221311675|ref|ZP_03593522.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221316002|ref|ZP_03597807.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320913|ref|ZP_03602207.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221325197|ref|ZP_03606491.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|296331353|ref|ZP_06873825.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676340|ref|YP_003868012.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321313263|ref|YP_004205550.1| two-component response regulator [Bacillus subtilis BSn5] gi|296151468|gb|EFG92345.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414584|gb|ADM39703.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|320019537|gb|ADV94523.1| two-component response regulator [Bacillus subtilis BSn5] Length = 123 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 1 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 61 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|56696905|ref|YP_167267.1| sensory box sensor histidine kianse/response regulator [Ruegeria pomeroyi DSS-3] gi|56678642|gb|AAV95308.1| sensory box sensor histidine kianse/response regulator [Ruegeria pomeroyi DSS-3] Length = 768 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL GY V+ ++ A ++ E+P + +TD+VMP +DG Sbjct: 652 VLLVEDEAPVRAFASRALRLRGYTVIEADSAEEAL-RLLEDPELSVDVFVTDVVMPGLDG 710 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+A + PD++V+F++G++ A +A N+ L KPF L L V++ L Sbjct: 711 PTWVRKALQERPDVRVVFVSGYSEGAFGETDSALPNSVFLPKPFSLTQLTETVHQQL 767 >gi|56421922|ref|YP_149240.1| stage 0 sporulation protein F [Geobacillus kaustophilus HTA426] gi|56381764|dbj|BAD77672.1| stage 0 sporulation protein F (two-component response regulator, sporulation initiation phosphotransferase F) [Geobacillus kaustophilus HTA426] Length = 120 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + + GY NG A + R+ L+L D+ +P MD Sbjct: 1 MGNKILIVDDQYGIRILLNEVFQREGYVTYQAANGMQALEIARKHHPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIE+ +R E+DPD+KV+ +T + + + ++ +KPF + DL V + +T Sbjct: 61 GIEILKRLKEIDPDIKVIIMTAYGKLDMIQETKELGALMHFAKPFDIDDLRVAVKKYIT 119 >gi|295400660|ref|ZP_06810637.1| response regulator receiver protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112650|ref|YP_003990966.1| response regulator receiver protein [Geobacillus sp. Y4.1MC1] gi|294977241|gb|EFG52842.1| response regulator receiver protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217751|gb|ADP76355.1| response regulator receiver protein [Geobacillus sp. Y4.1MC1] Length = 120 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY NG A + V++ L+L D+ +P MD Sbjct: 1 MGNKILIVDDQYGIRILLNEVFQKEGYTTYQAANGMQALEIVQKYRPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ +R E+D D+KV+ +T + + + ++ +KPF + DL V RLL Sbjct: 61 GIEILKRLKEIDQDIKVIIMTAYGELDMIQETKELGAMMHFAKPFDIDDLRAAVKRLL 118 >gi|312143401|ref|YP_003994847.1| response regulator receiver protein [Halanaerobium sp. 'sapolanicus'] gi|311904052|gb|ADQ14493.1| response regulator receiver protein [Halanaerobium sp. 'sapolanicus'] Length = 231 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 59/111 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ ++R L KAL AGYEV + NG K++EE ++L D+ MP MD Sbjct: 1 MKNKILIVDDEKNIRLTLKKALSNAGYEVETAVNGEDGLSKLKEEEIPVVLLDMKMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 GI+ + K++ ITG+ +V ++ L KPF +++ Sbjct: 61 GIQFLKEVKNEGIKTKIILITGYGSVETAVETLKLGAVDYLRKPFKPEEII 111 >gi|224369678|ref|YP_002603842.1| sensory box histidine kinase and response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692395|gb|ACN15678.1| sensory box histidine kinase and response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 524 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 64/114 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL +D++D+R L L GY V NG A + + F ++LTDI MP MDGI Sbjct: 8 KEILLVDDEEDIREVLAITLQDLGYRVTLAENGQKAMELFKNHGFPIVLTDIKMPVMDGI 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +L ++ + P+ +++ ITG + L +S + + ++KP ++ L ++R Sbjct: 68 QLLKKIKAIAPETEIIMITGHGDMDLAIESFRNQAVEFITKPVDVKSLEVAIDR 121 >gi|189424753|ref|YP_001951930.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189421012|gb|ACD95410.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 472 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 69/112 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D+ +R + + L ++V + NG +A +++++EPF L++TD+ MP + G+ Sbjct: 5 KKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGM 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ + E+ PDL V+FITG+++V + ++KPF ++++ + Sbjct: 65 EVLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTI 116 >gi|193212432|ref|YP_001998385.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085909|gb|ACF11185.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 798 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 76/128 (59%), Gaps = 14/128 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK---VREEPFS----LLLTDI 54 + IL+ ED+ ++ L K+G+ V++ +A+ K + E FS LLLTD+ Sbjct: 677 HTTILVVEDEPEILSLCKMMLQKSGFTVLT-----AAFPKDAIMIAEEFSGKIDLLLTDV 731 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNE 113 +MPEM+G+ELA + + + P +V+F++G++A + D P N+ +L KPF ++ L+ + Sbjct: 732 IMPEMNGVELASKLSTISPGFRVLFMSGYSADII-ADKGMPHNSFNLLRKPFTIKTLIEK 790 Query: 114 VNRLLTIK 121 VN +L K Sbjct: 791 VNAVLEAK 798 >gi|242277862|ref|YP_002989991.1| Fis family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242120756|gb|ACS78452.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio salexigens DSM 2638] Length = 447 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 63/110 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R L + +AG+ VV+ ++G A K+ ++ F L+LTD+++P M+GIEL Sbjct: 7 ILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLPGMNGIEL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ P +V+ ITG A+V + ++KP +L +L +V Sbjct: 67 LEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQV 116 >gi|158523233|ref|YP_001531103.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512059|gb|ABW69026.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 594 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + +L+ EDD + +F + L + GY V++ ++ A R LLLTD+VMPEM Sbjct: 476 ETVLMVEDDPAILKFGVTVLEQLGYNVLAADSPEKALALARSGGHAIDLLLTDVVMPEMS 535 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA E P ++ ++I+G+ A A++ + L+KPF +R+L +V L+ Sbjct: 536 GHELAGCIRETIPTVRCLYISGYTANAISNGDLIENHICFLAKPFSIRELAEKVREALS 594 >gi|261420792|ref|YP_003254474.1| response regulator receiver protein [Geobacillus sp. Y412MC61] gi|297531587|ref|YP_003672862.1| response regulator receiver protein [Geobacillus sp. C56-T3] gi|319768462|ref|YP_004133963.1| response regulator receiver protein [Geobacillus sp. Y412MC52] gi|261377249|gb|ACX79992.1| response regulator receiver protein [Geobacillus sp. Y412MC61] gi|297254839|gb|ADI28285.1| response regulator receiver protein [Geobacillus sp. C56-T3] gi|317113328|gb|ADU95820.1| response regulator receiver protein [Geobacillus sp. Y412MC52] Length = 120 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + + GY NG A + R+ L+L D+ +P MD Sbjct: 1 MGNKILIVDDQYGIRILLNEVFQREGYVTYQAANGMQALEIARKHHPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIE+ +R E+DPD+KV+ +T + + + ++ +KPF + DL V + +T Sbjct: 61 GIEILKRLKEIDPDIKVIIMTAYGELDMIQETKELGALMHFAKPFDIDDLRVAVKKYIT 119 >gi|116619301|ref|YP_821457.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116222463|gb|ABJ81172.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 783 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 4/121 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPE 58 ++ IL+AED+ +R+ + AL GY V++ +G A ++ E+ P LLLTD++MP Sbjct: 661 HETILVAEDEAGVRKLVCDALELFGYTVLAAADGYEAM-RILEQCNGPVHLLLTDVIMPL 719 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G ELA+R P+ KV++++G+ L N + KPF + L +V ++L Sbjct: 720 MGGRELAKRVQSSKPETKVIYMSGYTDDTLAFHGFPQSNDGFIQKPFTMTVLAEKVRQVL 779 Query: 119 T 119 + Sbjct: 780 S 780 >gi|16080766|ref|NP_391594.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|134742|sp|P06628|SP0F_BACSU RecName: Full=Sporulation initiation phosphotransferase F; AltName: Full=Stage 0 sporulation protein F gi|34810566|pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20 Conformers gi|157831132|pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20 Structures gi|157832083|pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis gi|157834971|pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, Minimized Average Structure gi|40157|emb|CAA27217.1| unnamed protein product [Bacillus subtilis] gi|143598|gb|AAA16802.1| spo0F [Bacillus subtilis] gi|143601|gb|AAA22787.1| Spo0F protein [Bacillus subtilis] gi|853764|emb|CAA89872.1| spo0F [Bacillus subtilis subsp. subtilis str. 168] gi|2636238|emb|CAB15730.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291486299|dbj|BAI87374.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 124 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 Query: 121 KN 122 K+ Sbjct: 122 KS 123 >gi|158318173|ref|YP_001510681.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158113578|gb|ABW15775.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 668 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 + I++ ED+ MR + L + GY+V+ +G A E LLLTD+VMP++ Sbjct: 532 ETIMVVEDEPAMRELTRRILARNGYQVIIAASGPEAISLASTTREEIHLLLTDVVMPQLL 591 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A R + DL+V++++G+A L + +L+KPF R L+++V +L Sbjct: 592 GSEVAERIRQQRQDLRVLYMSGYAQPVLARNGTLAPGLALLTKPFSERVLLSKVREVL 649 >gi|253700622|ref|YP_003021811.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775472|gb|ACT18053.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 796 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 IL+ EDD +R + L K GY V+ N A + S L+LTD++MPEM+G+ Sbjct: 679 ILVVEDDPMLRTMATQMLEKIGYRVIEAGNPQVALSICADPTTSIDLVLTDVIMPEMNGL 738 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E+AR L PD KV+F+TG+++ + + KPF++ L Sbjct: 739 EMARGIAALRPDTKVLFMTGYSSDVIASHGIIQPGLHYVEKPFNMEGL 786 >gi|328952038|ref|YP_004369372.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] gi|328452362|gb|AEB08191.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] Length = 135 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL--GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M ++IL+ +D+ +M R L+KA+ GK YEVV+ NN ++EE F LL+TD+ MP Sbjct: 1 MPERILVVDDEPNMLR-LLKAIITGKTSYEVVTTNNPLEVSKLLQEELFDLLITDLKMPL 59 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DG++L ++DP L ++ IT + + ++ ++KPF ++ + R L Sbjct: 60 LDGMDLIDTVKKMDPTLPIIMITAYGTIETAEEAIQKGAYDYITKPFRQEAILITLKRAL 119 >gi|168701638|ref|ZP_02733915.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 863 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL +DD +R L AG VV + +A D +R EPF++L+TDIVMPE+ G Sbjct: 730 VLLVDDDPSVRATTAAILRYAGVIVVEADAPGAALDLIRHASEPFAVLITDIVMPELSGP 789 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRL 117 +LA + PD++V+FI+G+ L P + P+ + L KPF L+ E+ L Sbjct: 790 QLAEQVRLRCPDIRVLFISGYPREEL-PQNTMPREGDRFLHKPFAAVQLLVELQAL 844 >gi|220919457|ref|YP_002494761.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] gi|219957311|gb|ACL67695.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] Length = 627 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 2/107 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58 + + ++LAED+D +R L + L +GY+V+S NGA A + R +LLTD+VMP Sbjct: 501 LGETVVLAEDEDALRTLLGRVLSGSGYQVISGRNGAEALEAARARGGRVDVLLTDLVMPR 560 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 M G ELA T P +KV+F+TG L D + +++ KPF Sbjct: 561 MTGAELAEALTPGQPGMKVLFMTGHTDDVLVQDRLVDGDVELIQKPF 607 >gi|218673967|ref|ZP_03523636.1| putative two-component sensor histidine kinase protein [Rhizobium etli GR56] Length = 548 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +N IL+ EDD+ +R ++L + GY V+ +G A + + L+ TDIVMP+M Sbjct: 419 VNDTILVVEDDEHVRTMTAESLHELGYTVLQAGSGVEALLLLEQNSDIDLIFTDIVMPQM 478 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA E P +++++ TG+ A+ + +L+KPF L L +++ LL Sbjct: 479 SGRQLADAVQEKWPRIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELLN 538 Query: 120 I 120 + Sbjct: 539 M 539 >gi|91204350|emb|CAJ72003.1| strongly similar to sigma 54 response regulator [Candidatus Kuenenia stuttgartiensis] Length = 455 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +D+ MR L L K GY+V S +N +R E F +++TD+ +P M+ Sbjct: 1 MSNKILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+EL + +PD+ V+ +T + + + ++KPF +L+ ++ R L Sbjct: 61 GMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQH 120 Query: 121 KN 122 KN Sbjct: 121 KN 122 >gi|289670367|ref|ZP_06491442.1| putative two-component system response regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 122 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED +++R + +AL AG V + ++G SA +R+ P+ ++ +DI MP M G Sbjct: 6 RLLMVEDQEELRELIGEALRDAGISVDTADDGQSALRMLRDSGPYDVVFSDIRMPNGMSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ + +L P +V+ +GFA L P P L KP+ LR L++ Sbjct: 66 IELSEQVAQLLPQARVILASGFAKAQLPP---LPAQVDFLPKPYRLRQLID 113 >gi|300776266|ref|ZP_07086124.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300501776|gb|EFK32916.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 234 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDDD + + + K +A +EV +G S + F L++TDIV+P+ DG+E Sbjct: 4 ILLVEDDDRLSKLIAKGFQEAQFEVTVAYDGNSGMKLALQNHFDLIVTDIVLPKKDGLEF 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L PDL V+ +T + L+KPF +R+LV + LL Sbjct: 64 CNEIKALKPDLPVIMLTALGTTDDKLEGFDAGADDYLTKPFEMRELVARIKVLL 117 >gi|197124736|ref|YP_002136687.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] gi|196174585|gb|ACG75558.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] Length = 638 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 2/107 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58 + + ++LAED+D +R L + L +GY+V+S NGA A + R +LLTD+VMP Sbjct: 512 LGETVVLAEDEDALRTLLGRVLSGSGYQVISGRNGAEALEAARARGGRVDVLLTDLVMPR 571 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 M G ELA T P +KV+F+TG L D + +++ KPF Sbjct: 572 MTGAELAEALTPGQPGMKVLFMTGHTDDVLVQDRLVDGDVELIQKPF 618 >gi|27377287|ref|NP_768816.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350430|dbj|BAC47441.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 634 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEP-FSLLLTDIVMPEMD 60 + IL+ EDD D+R ++ + L Y VV ++ +A ++EEP L+LTD+VMP ++ Sbjct: 511 ETILVVEDDTDLRAYVSELLRDLNYRVVVASSAQAALTILLQEEPKVDLVLTDVVMPGIN 570 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ RRA ++ P +K++++TG++ A+ + ++L KP L V +L Sbjct: 571 GREMGRRAQQIRPGIKILYMTGYSRNAVVHQGRLDEGVELLEKPISQAKLAFRVREML 628 >gi|196234506|ref|ZP_03133330.1| response regulator receiver sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196221433|gb|EDY15979.1| response regulator receiver sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 393 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ L L GYE + G +A + +R F L+LTD++MPEMDGI Sbjct: 19 KLLVVDDEARQMTALCNTLRDQGYETTGFSAGQAALEALRSTKFDLVLTDLMMPEMDGIT 78 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R A LDP L + +TG +V ++ + KPF L ++ ++R +T++ Sbjct: 79 FLRAALALDPTLVGVVMTGHGSVETAVEAMKSGALDYILKPFKLSAVIPVLSRAMTVR 136 >gi|84517373|ref|ZP_01004726.1| sensory box sensor histidine kianse/response regulator [Loktanella vestfoldensis SKA53] gi|84508737|gb|EAQ05201.1| sensory box sensor histidine kianse/response regulator [Loktanella vestfoldensis SKA53] Length = 748 Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ + +A + + L +TD++MP MDG Sbjct: 626 VLLVEDEAPVRAFASRALRLRGYSVLEADCAETALAMLEDSALHVDLFVTDVIMPGMDGP 685 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+A E PD KV+FI+G+A A + NA L KPF L L V L Sbjct: 686 TWVRQAREARPDTKVVFISGYAEDAFSDSQPQVANAIFLPKPFSLITLTQTVQDQL 741 >gi|187921258|ref|YP_001890290.1| histidine kinase [Burkholderia phytofirmans PsJN] gi|187719696|gb|ACD20919.1| histidine kinase [Burkholderia phytofirmans PsJN] Length = 552 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ EDD ++R L+++L GY V +G + ++++++ LL+ D MP M+GI Sbjct: 437 KRVLVVEDDSEVRAMLVESLRMLGYTVTEAADGRTGLNRLQDDNPDLLMVDFAMPGMNGI 496 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ A ++ DL V+ TG+A V ++ A K +L KPF L DL V Sbjct: 497 DVIAEARKMREDLPVILATGYADVDIS--GLAVKRCTILRKPFQLDDLARTV 546 >gi|320355420|ref|YP_004196759.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123922|gb|ADW19468.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1106 Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 ILL ED++ +R+ L +GY V+ A E LLLTD+VMPEM+G Sbjct: 984 ILLVEDEETVRQMARDILEMSGYTVLVAMTPQEALTICADAERTIDLLLTDVVMPEMNGR 1043 Query: 63 ELARRATELDPDLKVMFITGFAAVAL---NPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL+R+ PD+KV+F++G+AA L + DS P + KPF ++ L ++ +LL Sbjct: 1044 ELSRQILARRPDIKVLFMSGYAADILVLDDRDSELP----FIKKPFTVQGLQEKIEQLL 1098 >gi|217076921|ref|YP_002334637.1| transcriptional regulatory protein ResD [Thermosipho africanus TCF52B] gi|217036774|gb|ACJ75296.1| transcriptional regulatory protein ResD [Thermosipho africanus TCF52B] Length = 119 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 53/82 (64%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+D+MR + + L ++GY+V NG A K RE+ + L+ DI MP M+G+ Sbjct: 4 KKILVVEDEDNMRLLITEELEESGYDVDEARNGEEALKKFREKEYDLVTVDIEMPGMNGL 63 Query: 63 ELARRATELDPDLKVMFITGFA 84 E+A + E+ D K++ +T ++ Sbjct: 64 EVAGKIREIKKDAKIIILTAYS 85 >gi|256420693|ref|YP_003121346.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035601|gb|ACU59145.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 236 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL EDD + + L KAGY VV C++G ++ +E PF + L D+VMP MD Sbjct: 1 MKAGVLLVEDDHFFAKVIKSHLEKAGYLVVHCSDGEEGWNTFQERPFDICLLDVVMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G LAR + + ++ ++F T + L KPF++ +L+ Sbjct: 61 GFALAREIRDRNENIPIIFTTSRYMEQDKLNGFECGGDDYLVKPFNMEELL 111 >gi|153004395|ref|YP_001378720.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152027968|gb|ABS25736.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 127 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 49/81 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDDDD R + + L +GY+V + +G + E P ++TD+ MP M G+E Sbjct: 7 RVLLVEDDDDNRELMAEVLEASGYQVHTAASGQEGLTTLSEHPIDAVVTDVGMPGMGGLE 66 Query: 64 LARRATELDPDLKVMFITGFA 84 +AR A + P + V+ +TG+A Sbjct: 67 MARAAKAIAPTVPVVIVTGWA 87 >gi|116249479|ref|YP_765317.1| putative two-component transcriptional regulator sensor histidine kinase [Rhizobium leguminosarum bv. viciae 3841] gi|115254127|emb|CAK03730.1| putative two-component transcriptional regulator sensor histidine kinase [Rhizobium leguminosarum bv. viciae 3841] Length = 641 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ +L+ EDD +RR + L GY+V NG A D ++E P +LL TDIVMP M Sbjct: 521 DEVVLVVEDDARVRRVAVARLASMGYKVREAENGHRALDLLKENPDVALLFTDIVMPGGM 580 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA+ L PD+ V+F +G++ L + P A+ L KP+ ++L V LL Sbjct: 581 TGDELAKEVRILRPDIAVLFTSGYSEPGLAGNDTVP-GAQWLRKPYTAKELALRVRELLD 639 Query: 120 IK 121 K Sbjct: 640 AK 641 >gi|49474327|ref|YP_032369.1| sensor histidine kinase [Bartonella quintana str. Toulouse] gi|49239831|emb|CAF26224.1| Sensor histidine kinase [Bartonella quintana str. Toulouse] Length = 829 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V+ +G A + E ++++D+VMPEMDG Sbjct: 712 VLLVEDEDAVRMGGVRALQMRGYNVLEAASGVEALAILEESKGAVDIIVSDVVMPEMDGP 771 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 L + + + PD+K +F++G+ A N P++A LSKPF L+ L V L Sbjct: 772 TLLKESRQKYPDIKFIFVSGYTKDAFT--KNLPQDAIFGFLSKPFTLKQLTLAVKETL 827 >gi|187927139|ref|YP_001897626.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|309780158|ref|ZP_07674909.1| sensory box sensor histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] gi|187724029|gb|ACD25194.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|308920861|gb|EFP66507.1| sensory box sensor histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] Length = 732 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R + L + GY V++ NG +A D + LL TD++MP + Sbjct: 457 ETILVVEDDTDVRLTAVDMLTQLGYRVLTAANGQAALDLMNSGTSIDLLFTDVIMPGPIK 516 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G EL+ RA + P L V+ ++G+ + D P +L KP+ DL V +LT Sbjct: 517 GSELSIRAAQRVPPLPVLLVSGYPRDEVQHDGRLPPGVTLLGKPYRRDDLARMVRNVLT 575 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 2/106 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD R + + L G + V+ N A R +LLTD+ +P G L Sbjct: 605 VLLVEDDTASREAMQEVLTTFGLQCVAAVNAEDALALARTRSVQVLLTDLTLPGQSGANL 664 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 AR + P L+V+ ++G+ A + A A++L KP L L Sbjct: 665 ARTLLRMQPQLQVLLMSGYGTEAEIGEPIA--GARLLGKPIDLMTL 708 >gi|209548804|ref|YP_002280721.1| integral membrane sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534560|gb|ACI54495.1| integral membrane sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 548 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 +N IL+ EDD+++R ++L + GY V+ +G A + E L+ TDIVMP+M Sbjct: 419 VNDTILVVEDDENVRIMTAESLHELGYTVLQAASGMEALLLLEENREVDLIFTDIVMPQM 478 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA E P +++++ TG+ A+ + +L+KPF L L +++ LL Sbjct: 479 SGRQLADIVQEKWPAIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELLN 538 Query: 120 I 120 + Sbjct: 539 V 539 >gi|154687828|ref|YP_001422989.1| Spo0F [Bacillus amyloliquefaciens FZB42] gi|308175441|ref|YP_003922146.1| stage 0 sporulation protein F [Bacillus amyloliquefaciens DSM 7] gi|154353679|gb|ABS75758.1| Spo0F [Bacillus amyloliquefaciens FZB42] gi|307608305|emb|CBI44676.1| stage 0 sporulation protein F [Bacillus amyloliquefaciens DSM 7] Length = 124 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 66/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 2 MNEKILIVDDQYGIRILLNEVFHKEGYQTFQAANGIQALDIVTKERPDLVLLDMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D ++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 62 GIEILKRMKMIDESIRVIIMTAYGELDMIKESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 Query: 121 KN 122 K+ Sbjct: 122 KS 123 >gi|313498518|gb|ADR59884.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 688 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE-M 59 ++ILL ED +R + + L + GY V + NG SA ++ E P LLL+D+ +P + Sbjct: 569 KRILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQGGERP-DLLLSDVGLPGGL 627 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA R E PDLKV+ ITG+ A D + VL+KPF L L V LL Sbjct: 628 NGRQLAERCRERYPDLKVLLITGYDESAALSDGQPLQGTLVLTKPFELEALAERVRELL 686 >gi|328555421|gb|AEB25913.1| stage 0 sporulation protein F [Bacillus amyloliquefaciens TA208] Length = 123 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 66/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 1 MNEKILIVDDQYGIRILLNEVFHKEGYQTFQAANGIQALDIVTKERPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D ++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 61 GIEILKRMKMIDESIRVIIMTAYGELDMIKESKELGALTHFAKPFDIDEIRDAVKKYLPL 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|283850870|ref|ZP_06368156.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] gi|283573793|gb|EFC21767.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] Length = 464 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ EDD R L +AL GYE + + + R E F L+LTD+++P MD Sbjct: 1 MSARILVIEDDAAFRAMLCEALASKGYEPLGLGSAEEGVARARAEAFDLVLTDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE R E P V+ +TG+A ++ +KPF L ++ + R L Sbjct: 61 GIEGLSRLKEASPGCDVIVMTGYATKEKALEAVRLGAYDFFAKPFSLAEMEVVIRRAL 118 >gi|295699206|ref|YP_003607099.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295438419|gb|ADG17588.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 886 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ +NG +A + + + P LL TD+VMP ++ Sbjct: 585 ETILVVEDDADVRLTAVEMLAQLGYKVLTASNGDAALEFIDSDVPIDLLFTDVVMPGKLK 644 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ELA+RA P L +F +G+ + +LSKP+ DL V +L Sbjct: 645 SVELAQRAAARTPPLPTLFTSGYTRDEIVHHGKLDAGITLLSKPYRRDDLARLVRNVL 702 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD + R L + LG G + + +A + + +LLTD+ +P M G E Sbjct: 767 RVLFVEDDTESREALGELLGALGLACTAVASAEAALPLASTQRYDVLLTDLKLPGMSGDE 826 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR ++ P ++V+ ++G+ A A A++L KP + L +E+ + L Sbjct: 827 LARAVRQVQPAIRVLLVSGYGRSA--EIGAAIPGARLLGKPLDIAQLRHELAQWL 879 >gi|197118898|ref|YP_002139325.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088258|gb|ACH39529.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 457 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 59/109 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ EDDD R L+ L G+ V C++G + EPF +++TD+ +P+++G Sbjct: 4 NIKILVIEDDDSSREALLILLKSIGFTVKGCSSGQDGLGVLSGEPFDIVITDLFLPDLNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I++ R E P +V+ +TG+ + + ++KP ++ +L Sbjct: 64 IDILTRVKESSPRTEVILVTGYGSAETAVQAMKKGAYDYITKPLNIEEL 112 >gi|148255719|ref|YP_001240304.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407892|gb|ABQ36398.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 600 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ILL ED+ +R L +AGY V S +NG A +RE + L+L+D+VMP + Sbjct: 471 GERILLVEDNSLAQRATAAMLTRAGYSVQSTSNGEEALRFLREHADAVDLVLSDVVMPRL 530 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK--NAKVLSKPFHLRDLV 111 G ELAR+ PDL V+F+TG++ + D+ + + + KPF DL+ Sbjct: 531 SGPELARQLAVSHPDLPVLFMTGYSNDPIIADAGEHRIGGRRTIMKPFKREDLL 584 >gi|330960930|gb|EGH61190.1| response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 125 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDEPLILMLLADYLSGVGYRVLQAENGEQAFEILATKPHLDLMITDYRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ A L S A +L+KPF + L +++ LL Sbjct: 69 QIAEPAVMLRPELKVIFISGYPAEILESGSPIAAKAPILAKPFTMETLQSKIQSLLA 125 >gi|218780143|ref|YP_002431461.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761527|gb|ACL03993.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 751 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ ILLAE D +R+ + L + GY V + NG A D + P F L++T++ MP M Sbjct: 630 NETILLAESDPQIRKMNTQVLTRLGYSVHAEANGKEALDALANSPGRFDLIITELHMPIM 689 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LAR A + PDL V+ TGFA ++ V+ KP +D+ V +L Sbjct: 690 TGAQLARDAKAMQPDLPVVLCTGFAEALTLQEAQDMGVDGVIKKPMRKKDVALVVRSVL 748 >gi|26990467|ref|NP_745892.1| response regulator receiver protein [Pseudomonas putida KT2440] gi|24985440|gb|AAN69356.1|AE016573_1 response regulator [Pseudomonas putida KT2440] Length = 116 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 11/119 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 +L+ EDDD +R +++ L GY+V+ + +A +V E+P +L++TD+ +P+M Sbjct: 2 HLLVVEDDDIVRMLMVEVLDDLGYKVIEAEDATAAL-RVLEDPSQALALMMTDVGLPDMR 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA +A EL P L V+F +G+A DS N P+ ++ KPF + L + V +L Sbjct: 61 GEELAGKARELRPLLPVLFASGYA------DSFNVPEGMHLIGKPFSIDQLRDTVVGIL 113 >gi|187920516|ref|YP_001889548.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718954|gb|ACD20177.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 887 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G +A + + + P LL TD+VMP ++ Sbjct: 585 ETILVVEDDADVRLTAVEMLAQLGYKVLTASSGDAAIEFIESDVPIDLLFTDVVMPGKIK 644 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ELA+RA P + +F +G+A + +LSKP+ DL +V +L Sbjct: 645 SVELAQRAATRSPAVPTLFTSGYARDEIVHHGKLDAGITLLSKPYRRDDLARKVRGVL 702 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + R L G + + + A V + F +L TD+ +P M G Sbjct: 768 RVLLVEDDMNSREAFNDLLNALGLDCTAVGSAEEALPLVPAQHFDILFTDLTLPGMSGDC 827 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 LAR P ++V+ ++G+ A D A A++L KP + +L E+ Sbjct: 828 LARAMLRQQPGIRVLLVSGYGKSAQIGD--AIPGARLLGKPLDIAELRREL 876 >gi|325105492|ref|YP_004275146.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pedobacter saltans DSM 12145] gi|324974340|gb|ADY53324.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pedobacter saltans DSM 12145] Length = 475 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 69/116 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ ++ L K LGK G+EV + + GASA+D + +E F+L++ D + + DG Sbjct: 2 KKILIIDDEVNIGLLLSKFLGKNGFEVKTASTGASAFDILSKEYFNLVMCDFRLEDTDGR 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ ++ L P V+ ITG++ + L + ++KP + +++N VN+ L Sbjct: 62 EVLKKIKHLYPRTGVIIITGYSDIKLAVELIKMGAYDYITKPLYPDEILNTVNKAL 117 >gi|332982072|ref|YP_004463513.1| Fis family two component sigma-54 specific transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699750|gb|AEE96691.1| two component, sigma54 specific, transcriptional regulator, Fis family [Mahella australiensis 50-1 BON] Length = 449 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 65/120 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D++ MR L KAL + YE + +G + + L+L D+ +P MD Sbjct: 1 MPHRILIIDDEERMRWVLCKALEQESYEAEAAGDGIEGLKMLDKHSIDLVLLDMRLPIMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ +R EL P L V+ IT + ++ + + ++KPF + +LV ++ + L + Sbjct: 61 GMEVLKRIKELYPSLPVIIITAYGSIEMAVAAVKAGATDYITKPFDIDELVIQIKKALDV 120 >gi|253700321|ref|YP_003021510.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251775171|gb|ACT17752.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 457 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 58/109 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ EDDD R L+ L G+ V C +G + EPF +++TD+ +P+++G Sbjct: 4 NIKILVIEDDDSSREALLILLKSIGFTVKGCGSGQDGLGVLSGEPFDIVITDLFLPDLNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I++ R E P +V+ +TG+ + + ++KP ++ +L Sbjct: 64 IDILTRVKESSPRTEVILVTGYGSAETAVQAMKKGAYDYITKPLNIEEL 112 >gi|196249781|ref|ZP_03148477.1| response regulator receiver protein [Geobacillus sp. G11MC16] gi|196210657|gb|EDY05420.1| response regulator receiver protein [Geobacillus sp. G11MC16] Length = 120 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + + GY NG A + VR+ L+L D+ +P MD Sbjct: 1 MGNKILIVDDQYGIRILLNEVFQREGYVTYQAANGMQALEIVRKHHPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R ++DPD+KV+ +T + + + ++ +KPF + DL V + +++ Sbjct: 61 GIEILKRLKDIDPDIKVIIMTAYGELDMIQETKELGALMHFAKPFDIDDLRAAVKKHISV 120 >gi|313672886|ref|YP_004050997.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939642|gb|ADR18834.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] Length = 120 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 59/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILL EDD LI GYEV NG SA++ ++E ++L++TDI+MPE+DGI Sbjct: 2 SKILLVEDDKYSAGGLIDLFTSEGYEVDHALNGKSAFELLKENQYNLIITDIMMPELDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + D V+ IT + ++L KPF + D + V LL Sbjct: 62 KFLHRIRAIGVDTPVIVITAYDTTENIMAVYELGAVEILEKPFDIDDFLKLVQDLL 117 >gi|289662759|ref|ZP_06484340.1| putative two-component system response regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 122 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED +++R + +AL AG V + ++G SA +R+ P+ ++ +DI MP M G Sbjct: 6 RLLMVEDQEELRELIGEALRDAGISVDTADDGHSALRMLRDSGPYDVVFSDIRMPNGMSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ + +L P +V+ +GFA L P P L KP+ LR L++ Sbjct: 66 IELSEQVAQLLPQARVILASGFAKAQLPP---LPAQVDFLPKPYRLRQLID 113 >gi|158521788|ref|YP_001529658.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510614|gb|ABW67581.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 465 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 56/103 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D+++MR L L + GY+V + NGA A + V ++PF +L DI MP MDG+ Sbjct: 9 KNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 TE PD V+ ++ + + ++ +SKPF Sbjct: 69 AFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPF 111 >gi|86742144|ref|YP_482544.1| response regulator receiver protein [Frankia sp. CcI3] gi|86569006|gb|ABD12815.1| response regulator receiver protein [Frankia sp. CcI3] Length = 144 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + +L+AEDD + + L + GYEV++ + A E LLLTD++MP M Sbjct: 22 GETVLIAEDDAALLEVARRILSRNGYEVLAASTALDACSIAIEHRGDIHLLLTDVIMPRM 81 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA R P ++V++++G+A L +L+KPF R L+++V ++L Sbjct: 82 QGRELANRIRAQQPGIRVLYMSGYADPVLTAQGKLDPGVSLLTKPFSERTLLDKVRQVL 140 >gi|302389674|ref|YP_003825495.1| response regulator receiver protein [Thermosediminibacter oceani DSM 16646] gi|302200302|gb|ADL07872.1| response regulator receiver protein [Thermosediminibacter oceani DSM 16646] Length = 119 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D MR + L K GYEV NGA A +K +E SL++ DI MPEMDGIE Sbjct: 4 ILIVDDAAFMRMMIKDILTKNGYEVAGEAENGAVAVEKYKELKPSLVVMDITMPEMDGIE 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RR +DPD +++ + A+ D+ + KPF ++ V + L+ Sbjct: 64 AVRRIKSIDPDARIIMCSAMGQQAMVIDAIQAGARDFVVKPFQPDRVLEAVKKALS 119 >gi|170721625|ref|YP_001749313.1| histidine kinase [Pseudomonas putida W619] gi|169759628|gb|ACA72944.1| histidine kinase [Pseudomonas putida W619] Length = 559 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + IL+ EDD D+R+ L + L + G+ S N + A +R E LL++D+ +P M+G Sbjct: 440 RTILVVEDDPDVRQLLCQTLKEQGFPYRSACNASEALQILRSSEAIDLLVSDVGLPGMNG 499 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A L P L ++FITG+ A+ + +++ KPF L V ++L Sbjct: 500 RQLAEIARTLHPHLPILFITGYTETAMAREGFLGAGMQLMCKPFELAQFHARVMQIL 556 >gi|126462925|ref|YP_001044039.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126104589|gb|ABN77267.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 941 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+A+D+ D+ R L+ L AG EVV C++ A ++++P + LL+TD MP++ Sbjct: 819 RTILVADDNADVLRVLVAFLEGAGAEVVPCSDPRDALAALQDDPRIWDLLVTDYDMPQIS 878 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L R A +L PDL V+ IT + AP+ L KP L++ R + Sbjct: 879 GADLCRAANDLAPDLPVLLITALPDWRSRISAPAPRFTAELGKPLSRATLLDAAERAIGA 938 Query: 121 K 121 K Sbjct: 939 K 939 >gi|153007226|ref|YP_001381551.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030799|gb|ABS28567.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 495 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 60/102 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D D +R + AL + G++V++ GA A R++P +++TD+ M +DGIE Sbjct: 30 RILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMVPVDGIE 89 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + RR ELDPD V+ ++ +A+ ++ + KPF Sbjct: 90 VVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPF 131 >gi|27381827|ref|NP_773356.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27354996|dbj|BAC51981.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 625 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MD 60 + IL EDD D+R+++ L GY+V+ N A E + F LL TDIVM ++ Sbjct: 468 ETILCVEDDRDVRQYVTVQLESLGYKVIPAANATEALAIAAEGKAFDLLFTDIVMAGGIN 527 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA + P L+V+F +G+A +++ A K A +L+KP+ +L + R L Sbjct: 528 GRELAEQMVAARPSLRVLFTSGYAYDSMHAQGRATKGAPLLTKPYRKAELARMLRRSL 585 >gi|224535689|ref|ZP_03676228.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus DSM 14838] gi|224522699|gb|EEF91804.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus DSM 14838] Length = 1113 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 9/123 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ ED+DD+R +L+ LG+ Y V SC+NG A + + E L+L+DI+MPEM G Sbjct: 843 SRRILIVEDNDDLRIYLVNTLGE-DYLVQSCHNGKEALEILSEFKPDLVLSDIMMPEMSG 901 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + +++ I AL + N + K+ ++KPF + L +NR Sbjct: 902 DEL---CAAIKGNIETSHIPVLLLTALGDEKNMLEGLKIGADDYMAKPFSISILKASINR 958 Query: 117 LLT 119 L+T Sbjct: 959 LIT 961 >gi|217978914|ref|YP_002363061.1| histidine kinase [Methylocella silvestris BL2] gi|217504290|gb|ACK51699.1| histidine kinase [Methylocella silvestris BL2] Length = 558 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 Q++L+ EDD +R + + L + GY V +A + PF LL++D+ +P M+ Sbjct: 438 GQRVLVVEDDPAVRMLVREVLEELGYMAVEAAEPHAAIPLLASSTPFDLLISDVGLPGMN 497 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA A P+L ++FITG+A A + N +++KPF L DL +V+ ++T Sbjct: 498 GRELAEIARSYRPELPILFITGYAENAAIRAAFLGTNMSMVTKPFRLDDLAAKVSEMIT 556 >gi|294055443|ref|YP_003549101.1| response regulator receiver protein [Coraliomargarita akajimensis DSM 45221] gi|293614776|gb|ADE54931.1| response regulator receiver protein [Coraliomargarita akajimensis DSM 45221] Length = 189 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 5/105 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD RR LI +L + G+EVV+ +NG A+D E PF ++++D +MP +DG+E Sbjct: 2 KILVAEDDLISRRLLITSLKQFGHEVVAFDNGQDAWDAYDENPFRIIISDWLMPGIDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK----VLSKP 104 L R+ + P+ + + A A D A LSKP Sbjct: 62 LCRKVRK-RPETEYTYFILLTANAQGKDEYMEAMAAGIDDFLSKP 105 >gi|1240049|emb|CAA94319.1| FixL [Rhizobium leguminosarum] Length = 641 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ +L+ EDD +RR + L GY V NG A D ++E P +LL TDIVMP M Sbjct: 521 DEVVLVVEDDARVRRVAVARLASMGYTVREAENGHRALDLLKENPDVALLFTDIVMPGGM 580 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA+ L PD+ V+F +G++ L + P A+ L KP+ ++L V LL Sbjct: 581 TGDELAKEVRILRPDIAVLFTSGYSEPGLAGNDTVP-GAQWLRKPYTAKELALRVRELLD 639 Query: 120 IK 121 K Sbjct: 640 AK 641 >gi|194336252|ref|YP_002018046.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194308729|gb|ACF43429.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 925 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ ED+ D+ + L GY+V+ + A +++ +LLLTD++MPEM+ Sbjct: 806 ETILIVEDEPDILKLCKLMLESRGYKVLPTTTPSDAIKMIKQYKGNINLLLTDVIMPEMN 865 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL+R+ + PDLK +F++G+A ++ + KPF L L+ V L Sbjct: 866 GNELSRKLQSIRPDLKTLFMSGYATDIVSNHKMIDTGTHFIQKPFSLNALIKAVRESL 923 >gi|325921439|ref|ZP_08183295.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] gi|325548081|gb|EGD19079.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] Length = 644 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 ++ILL ++ D +R + + L AGY V N A +++R L+++D+ +P M+G Sbjct: 519 ERILLVDETDVVRMMVSEVLSDAGYHVTEAENANGALEQLRAGVEIDLVVSDVGLPGMNG 578 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A A L P L ++FITG+A A + +L KPF L DL+N V ++L Sbjct: 579 RDMADVARALRPGLPILFITGYAENAATRQEFLAEGMALLPKPFSLNDLLNMVGQML 635 >gi|253996190|ref|YP_003048254.1| response regulator receiver protein [Methylotenera mobilis JLW8] gi|253982869|gb|ACT47727.1| response regulator receiver protein [Methylotenera mobilis JLW8] Length = 122 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D D +RR ++ +L +AGY+VV +G +K +E+ L+LTD MP MD Sbjct: 1 MTKTILAVDDSDSLRRMVVFSLEQAGYQVVQAVDGQDGLEKAKEKTVDLVLTDHNMPVMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L +R +L + ++ +T ++ + + A L KPF+ L++ V ++L Sbjct: 61 GLSLIKRLRQLGSYQSVPILMLTTESSAEIKMEGKAAGATGWLVKPFYPERLLDVVQKVL 120 >gi|171909587|ref|ZP_02925057.1| multi-sensor hybrid histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 957 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPE- 58 ++ ILL +D+ +R L GY V+ +G A V E EP LLLTD+VMPE Sbjct: 827 HETILLVDDEPALRLVSKMTLKHFGYHVLEAGSGRQALKVVEEHPEPIDLLLTDMVMPEG 886 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G +LA + PD++V+F +G++ LN + P++ L KPF L + V L Sbjct: 887 ISGKDLADMLRDARPDMRVLFTSGYSVELLNRNIALPEDVWFLPKPFTTHKLAHMVRECL 946 >gi|217979330|ref|YP_002363477.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2] gi|217504706|gb|ACK52115.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2] Length = 622 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +L+ EDD+ M+R +A GY V+ + A + E LL TD+VMP+M+G + Sbjct: 504 VLVVEDDERMQRLTAEAFRDLGYSVLQADGPKMALQIIAERADIDLLFTDVVMPDMNGRQ 563 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA A + P LKV++ TGF+ A+ + ++ L+KPF L L +V L+ Sbjct: 564 LAEAALKARPGLKVVYTTGFSRNAVIHNGVLDRDVNFLAKPFTLEQLARKVAAALS 619 >gi|194336727|ref|YP_002018521.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309204|gb|ACF43904.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1051 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59 +Q ILL ED + + L + GY V++ + A A K + LLLTD++MPEM Sbjct: 916 HQTILLVEDQPAILKLCKSMLERNGYAVLTAESPAEALRKEANYKGTLDLLLTDVIMPEM 975 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G EL+R+ L P+LK +F++G+ + ++ + KPF ++ L+ V+ +L Sbjct: 976 NGSELSRQLQALRPELKTLFMSGYTDDVIIHNTLLDSGVNFIQKPFTMKSLITIVDTIL 1034 >gi|330971294|gb|EGH71360.1| response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 158 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 26 VLIVEDEPLILMLLADYLSGEGYRVLKAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 85 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L ++ +LL + Sbjct: 86 QIAEPAIMLRPELKVIFISGYPAEILDSGSPIALKAPILAKPFTMHTLHTQIEKLLAL 143 >gi|148261026|ref|YP_001235153.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Acidiphilium cryptum JF-5] gi|146402707|gb|ABQ31234.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Acidiphilium cryptum JF-5] Length = 487 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 68/114 (59%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG++GY+V + ++ A+ + V + L++TD+VMP+ +G++L Sbjct: 7 ILIADDDRSIRTVLTQALGRSGYQVRTTSSAATLWRWVEDGEGDLVITDVVMPDENGLDL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + P++ V+ ++ + + S + L KPF L +L+ V+R L Sbjct: 67 VPRIKRIRPEMPVLVMSAQSTILTAVQSTQRGAFEYLPKPFDLGELLAIVDRAL 120 >gi|99080803|ref|YP_612957.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99037083|gb|ABF63695.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 823 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+D R L L G+EVVS N GA A +++R F L+++DI MP++DG+ Sbjct: 591 QRLLVIEDNDINRLLLETMLNDMGHEVVSVNGGARAIEEIRTHRFDLIISDISMPDIDGM 650 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ R RA +L D ++ +T AA + A A+VL+KP L V R Sbjct: 651 EVLRRVRAEQLANDTDIVALTAHAARDDHERILAAGFAEVLTKPIDRAALAEMVLR 706 >gi|302039032|ref|YP_003799354.1| hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300607096|emb|CBK43429.1| Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 504 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 ILL EDD+ +RR + L GYEV++ +G A ++R+ LL+TD+++P M Sbjct: 385 ILLVEDDEGIRRLVSAVLRDQGYEVLAATDGVEALQMLQLRKGGCDLLITDVILPRMKAA 444 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA+ A + P++KV++I+G++ L A L KPF + ++ +V LL+ Sbjct: 445 VLAQGARTMFPNIKVLYISGYSGDML-VSHGVDAQAAYLQKPFLPQAIIEKVAELLS 500 >gi|326404426|ref|YP_004284508.1| nitrogen assimilation regulatory protein NtrC [Acidiphilium multivorum AIU301] gi|325051288|dbj|BAJ81626.1| nitrogen assimilation regulatory protein NtrC [Acidiphilium multivorum AIU301] Length = 487 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 68/114 (59%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG++GY+V + ++ A+ + V + L++TD+VMP+ +G++L Sbjct: 7 ILIADDDRSIRTVLTQALGRSGYQVRTTSSAATLWRWVEDGEGDLVITDVVMPDENGLDL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + P++ V+ ++ + + S + L KPF L +L+ V+R L Sbjct: 67 VPRIKRIRPEMPVLVMSAQSTILTAVQSTQRGAFEYLPKPFDLGELLAIVDRAL 120 >gi|114778354|ref|ZP_01453201.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] gi|114551317|gb|EAU53874.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] Length = 664 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 65/108 (60%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 ILLA+DD+ + ++ L G++V NG AY+ + P S +++TD+VMP M+G+ Sbjct: 543 ILLADDDERVLEPTMELLEAMGHQVTLARNGVEAYEVFVQHPESWDIVITDMVMPRMNGL 602 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E +++ L PD+ +++ TG+ + ++ N+ ++SKPF+ DL Sbjct: 603 EASQKMRLLRPDIPLIYATGYDQSLVIDNTQKVDNSTLISKPFNPDDL 650 >gi|320353584|ref|YP_004194923.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320122086|gb|ADW17632.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 715 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +D++ R + L K GY ++GA A + + E L++TD+ M MDGI Sbjct: 124 QSILIVDDEEIARANMEHVLKKEGYACHCASHGAEALEIMAREDIDLIITDLKMERMDGI 183 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 EL + P++ V+ +TGFA V+ D+ A L KP +L +L V +L K Sbjct: 184 ELLQHVNRTSPEIPVIMVTGFATVSSAVDALKKGAAHYLGKPVNLDELRKTVKEVLEKK 242 >gi|311070232|ref|YP_003975155.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870749|gb|ADP34224.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 123 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 66/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 1 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D ++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 61 GIEILKRMKVIDESIRVIIMTAYGELDMIQESKDLGALTHFAKPFDIDEIRDAVKKYLPL 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|310780088|ref|YP_003968420.1| response regulator receiver sensor signal transduction histidine kinase [Ilyobacter polytropus DSM 2926] gi|309749411|gb|ADO84072.1| response regulator receiver sensor signal transduction histidine kinase [Ilyobacter polytropus DSM 2926] Length = 541 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD + + L + L K GYEV + NNG + + +L+ DI MP M GIEL Sbjct: 133 ILLVDDDKNATKRLSRILTKEGYEVFTANNGKEGLEIINNNKIDILIADIEMPVMGGIEL 192 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV----NEVNRLLTI 120 R + D++V+ +TGF +L D+ L KP L +++ V R++ Sbjct: 193 LERVKKFQKDIEVIMMTGFGDESLAIDALRKGAINYLRKPIDLDEVLIAIEQAVERIILY 252 Query: 121 KN 122 +N Sbjct: 253 RN 254 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 47/85 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +DD + L K L + + N A + + + ++L DI MP++D Sbjct: 1 MSRTILIVDDDPTICSELQKELKRNFFPTFIAGNSKDALEILSKNKIDIILLDIFMPDID 60 Query: 61 GIELARRATELDPDLKVMFITGFAA 85 G+++ ++ P ++V+ ITG+++ Sbjct: 61 GLDMLKKVKSKWPSVEVIIITGYSS 85 >gi|303246334|ref|ZP_07332614.1| multi-sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492397|gb|EFL52269.1| multi-sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 651 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 59/105 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL +D++D+RRFL L GY V + NG A E S++LTDI MP MD Sbjct: 1 MSETLLLVDDEEDIRRFLGLFLSDLGYAVHAAANGEEALAMFDEVAPSIVLTDIKMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G+EL +R + PD +V+ I+G + L + A ++KP Sbjct: 61 GLELLKRIKAMSPDTEVVMISGHGDMDLAISCLQYEAADFVTKPI 105 >gi|153006989|ref|YP_001381314.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030562|gb|ABS28330.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 480 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 65/115 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D +MR L + G+ V +GA+A ++++E F ++LTD+ MP +DG+E Sbjct: 27 KILVVDDQKNMRATTAIVLRQGGHTVEEAEDGAAAVQRIQQETFDVVLTDLRMPSVDGME 86 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R A L P+ +V+ +T + + D+ L+KPF +L+ V++ L Sbjct: 87 VLRAAQRLAPETQVIVMTAYGTIESAVDAIRQGAYDFLAKPFKEDELLLRVSKAL 141 >gi|94265363|ref|ZP_01289117.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454116|gb|EAT04445.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 700 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++ +LL ED+ + L + GY V++ + A EE LL+TD+VMPE++ Sbjct: 575 HETVLLVEDEPAILTLAESLLSRLGYTVLAAATPSEALRLAEEETRIDLLITDVVMPEIN 634 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ELA R L P L V++++G+ A ++ + + KPF L DL ++ +LT Sbjct: 635 GRELAERLAALRPGLLVLYMSGYPAEVVSRQAMLGAGVHFIQKPFTLEDLAAKIREVLTA 694 Query: 121 K 121 K Sbjct: 695 K 695 >gi|94265894|ref|ZP_01289622.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1] gi|93453553|gb|EAT03955.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1] Length = 634 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 N+ IL+AEDD+ +R L + GY+V++ +G A + E+ LLL D++MP + Sbjct: 513 NETILVAEDDEAIRELTRSVLERFGYQVIAAVDGQEAVARFEEDRDNIDLLLFDLIMPRL 572 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E +L P +K +F +G+A L N N +L KP +++++ ++ ++L Sbjct: 573 NGQEAYDAIRQLKPGVKCIFASGYAPDLLRQKVNLEGNTPLLYKPMSIQEMLGKIRQVL 631 >gi|300087414|ref|YP_003757936.1| response regulator receiver protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527147|gb|ADJ25615.1| response regulator receiver protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 179 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 12/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R L AG+ VV+ +G A + ++ + F+L+ D+ MP M+G ++ Sbjct: 61 ILIVDDDQTIRDLFRDILEDAGHNVVTAGSGVEALEYIKAKDFALVFLDLKMPGMNGADV 120 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVNRLL 118 R+ +DP+L V ITGF PDS + A V++KPF D++N V + Sbjct: 121 LRKIRTIDPELPVTIITGF------PDSESMAAALAQGPFGVMNKPFGEADVLNAVKSFI 174 Query: 119 TI 120 I Sbjct: 175 RI 176 >gi|209547224|ref|YP_002279142.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538468|gb|ACI58402.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 727 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MDGI 62 IL+ EDD D+ + +++L + GY V+ +G +A + P L+ TD+V+P M G Sbjct: 610 ILVVEDDPDVLTYSVESLKELGYRVLEAKDGPTALQVLAFNLPVDLIFTDVVLPGGMSGA 669 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ RA EL P ++ +F TG++ A+ K +L KPF L DL + +L Sbjct: 670 DVVARARELQPSIRALFTTGYSRNAIVHQGRLDKGVHLLQKPFALADLALRIRNVL 725 >gi|150020358|ref|YP_001305712.1| response regulator receiver protein [Thermosipho melanesiensis BI429] gi|149792879|gb|ABR30327.1| response regulator receiver protein [Thermosipho melanesiensis BI429] Length = 119 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 53/82 (64%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+D+MR + + L ++GYEV NG A +K R + + L+ DI MP M+G+ Sbjct: 4 KRILVVEDEDNMRLLITEELEESGYEVDEARNGQEALEKFRSKDYDLVTVDIEMPGMNGL 63 Query: 63 ELARRATELDPDLKVMFITGFA 84 E+A + E+ D K++ +T ++ Sbjct: 64 EVAGKIREMKKDAKIIILTAYS 85 >gi|332702372|ref|ZP_08422460.1| anti-sigma-factor antagonist [Desulfovibrio africanus str. Walvis Bay] gi|332552521|gb|EGJ49565.1| anti-sigma-factor antagonist [Desulfovibrio africanus str. Walvis Bay] Length = 239 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 10/119 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D+ LG G+EV++ NG D + E ++LTDI MP MDGI Sbjct: 2 HKILIIDDEKPTLAMFRLFLGAYGFEVLTAENGEEGLDVFQREKPPIVLTDIKMPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ R E+DP +V+ ITG A ALN D+ ++KP +DL N +NR Sbjct: 62 EVLGRIKEIDPHTEVIVITGHGDMDLAIKALNLDAT-----DFINKPIRKQDLDNALNR 115 >gi|254489495|ref|ZP_05102698.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. GAI101] gi|214042002|gb|EEB82642.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. GAI101] Length = 1488 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 74/120 (61%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 + IL+ EDD+ +RR + L + Y+VV+ +G +A + +++ + L+L+D++MP M Sbjct: 1369 TETILVVEDDEKVRRLTVTRLEELQYKVVAAQDGPAAMEILKKRDDIDLVLSDVLMPGGM 1428 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 G ++A++A L P +K++ TG+A + P+ N + +VL KP+ LR+L ++ +L Sbjct: 1429 TGFDVAKKALALRPGVKILLATGYAK-GVEPNRNTNDSGYRVLRKPYGLRELARKLREIL 1487 >gi|194334029|ref|YP_002015889.1| response regulator receiver protein [Prosthecochloris aestuarii DSM 271] gi|194311847|gb|ACF46242.1| response regulator receiver protein [Prosthecochloris aestuarii DSM 271] Length = 125 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 8/122 (6%) Query: 3 QKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ D+ R + K L + GY V + G A + + F L++TDI+MPE++G Sbjct: 4 KQILVIDDEPDILRLIRKILENQGGYSVTTVEKGKKAEEMIETTKFDLVITDIIMPEIEG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD-----SNAPKNAKVLSKPFHLRDLVNEVNR 116 +E+ + P K++ I+G L+PD ++ VL KPF ++L+ EV + Sbjct: 64 MEIIFFLKKHSPTTKILAISGGG--KLSPDGYLTIASTAGAHSVLQKPFETQELLREVEQ 121 Query: 117 LL 118 LL Sbjct: 122 LL 123 >gi|296114945|ref|ZP_06833591.1| putative nitrogen assimilation regulatory protein [Gluconacetobacter hansenii ATCC 23769] gi|295978503|gb|EFG85235.1| putative nitrogen assimilation regulatory protein [Gluconacetobacter hansenii ATCC 23769] Length = 502 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 64/105 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG+AGY+V + + ++ + V E L++TD+VMP+++G++L Sbjct: 25 ILVADDDRSIRTVLSQALGRAGYQVRATAHASTLWQWVEEGEGDLVITDVVMPDLNGLDL 84 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 R + PDL+V+ ++ + + + + L KPF L++ Sbjct: 85 IPRIRRIRPDLRVVVMSAQSTLTTAVQATQRGAFEYLPKPFDLKE 129 >gi|330993260|ref|ZP_08317196.1| Nitrogen assimilation regulatory protein [Gluconacetobacter sp. SXCC-1] gi|329759662|gb|EGG76170.1| Nitrogen assimilation regulatory protein [Gluconacetobacter sp. SXCC-1] Length = 483 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +ALG+AGY+V + ++ + V E L++TD+VMP+ +G++L Sbjct: 6 ILVADDDRSIRTVLSQALGRAGYQVRATAQASTLWQWVEEGEGDLVITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL+V+ ++ + + + + L KPF L++++ V R L Sbjct: 66 IPRIRRVRPDLRVVVMSAQSTLMTAVKATQRGAFEYLPKPFDLKEVLAVVARAL 119 >gi|294010646|ref|YP_003544106.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] gi|292673976|dbj|BAI95494.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] Length = 623 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 IL+ ED++ +R + +L + GY +V ++G A + + +P +L TD+VMP ++G + Sbjct: 501 ILVVEDEERVRHMSVDSLRELGYTIVQASDGEQALEMLTIQPRIDMLFTDVVMPGINGRD 560 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA RA P LK+++ TG+ A+ + L+KPF L L +V ++L Sbjct: 561 LADRARASRPGLKILYTTGYTRNAIVHNGMLDPGVSFLAKPFTLDQLAAKVRQVL 615 >gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD + FL L K GYEV NG A DK+R E F+L+L DI+MP++D Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-------KPFHLRDLVNE 113 G E +R +L ++ ++F+T DS K +S KPF L +L Sbjct: 61 GFEAIKRIRKL-TNIPIIFLTA-------KDSQQDKIKGFISGCDDYITKPFDLVELSLR 112 Query: 114 VNRLL 118 V+ +L Sbjct: 113 VSAIL 117 >gi|188992547|ref|YP_001904557.1| Putative two-component system response regulator [Xanthomonas campestris pv. campestris str. B100] gi|167734307|emb|CAP52517.1| Putative two-component system response regulator [Xanthomonas campestris pv. campestris] Length = 120 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED ++R + +AL AG V + ++G SA +RE P+ ++ +DI MP M G Sbjct: 6 RLLMVEDQQELRDLIGEALRDAGITVDTADDGHSALRMLRENGPYDVVFSDIRMPNGMSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ + ++L P +++ +GFA L P P L KP+ LR L+ Sbjct: 66 IELSEQVSQLLPQARIILASGFAKAQLPP---LPAQVDFLPKPYRLRQLIG 113 >gi|27381017|ref|NP_772546.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27354183|dbj|BAC51171.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 676 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+AEDD +R + + GY VV+ NG A ++R P LL TDIVMP M Sbjct: 551 HETILVAEDDPFVRSSVTLRVEALGYRVVAAVNGKEALQQLRTNPAIDLLFTDIVMPGGM 610 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G ELA +A + P L V+F +G+A L A + VL+KP+ +L + Sbjct: 611 SGWELADQARRIRPGLPVVFSSGYALETLVEQGRAHAQSIVLTKPYRNAELARRL 665 >gi|86160638|ref|YP_467423.1| signal transduction histidine kinase NtrB [Anaeromyxobacter dehalogenans 2CP-C] gi|85777149|gb|ABC83986.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-C] Length = 627 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 2/107 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58 + + ++LAED+D +R L + L +GY+VVS NGA A + R +LLTD+VMP Sbjct: 501 LGETVVLAEDEDALRTLLGRVLSGSGYQVVSGRNGAEALEAARARGGRVDVLLTDLVMPR 560 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 M G ELA + P +KV+F+TG L D + +++ KPF Sbjct: 561 MTGAELAEALSPGQPGMKVLFMTGHTDDVLVQDRLVDGDVELIQKPF 607 >gi|299131770|ref|ZP_07024965.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] gi|298591907|gb|EFI52107.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] Length = 845 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 ILL ED+D +R + L GY V+ NG A + + E + L+++D+VMPEMDG Sbjct: 728 ILLVEDEDGLRSLNARGLRSRGYTVIEAENGLDALEALEAEGGTVDLVVSDVVMPEMDGP 787 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + +P LK++F++G+A A + L KPF L LV V + Sbjct: 788 TMLAAMRKTNPALKIIFVSGYAEDAFEKSLPDGEQFAFLPKPFTLSQLVGAVKETM 843 >gi|186474905|ref|YP_001856375.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184191364|gb|ACC69329.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 1631 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD+D+R +++ L GY V+ + SA V P LL TD+VMP + Sbjct: 1360 ETILVVEDDEDVRTTVVEMLSALGYRVLKAKDAQSALAIVESGVPIDLLFTDVVMPGSLR 1419 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELAR+A E P + V+F +G+ A+ + ++LSKP+ L ++ L + Sbjct: 1420 STELARKARERQPGIAVLFTSGYTDNAIVHAGRLDEGVELLSKPYSREALARKIEHALHV 1479 Query: 121 K 121 + Sbjct: 1480 Q 1480 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 2/112 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL EDD+ +R + L G EV + A D + E+ F +LLTDI + G Sbjct: 1514 NLRILFVEDDELVRVSTAELLRTFGVEVAEASGAVQALDLLHEKSFDVLLTDIGLAGASG 1573 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAP-KNAKVLSKPFHLRDLVN 112 I+LA AT + L+V+F+TG A AL+P+ A L KP+ DLVN Sbjct: 1574 IDLAIDATGRESRLRVIFVTGSDA-ALSPEQQLRLPGASQLRKPYDPLDLVN 1624 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ D+R ++ + L AG++V +G A R L+++D++MP++DG Sbjct: 644 KLLVVDDNADLRDYMRRILTAAGHQVYVAADGMEALAAARALQPELVVSDVMMPKLDGFG 703 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R RA + ++ V+ ++ A D L KPF R+L+ V Sbjct: 704 LLRALRADDGLREMPVLLLSARAGEEAKVDGLESGADDYLIKPFAARELLARV 756 >gi|158320115|ref|YP_001512622.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140314|gb|ABW18626.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus oremlandii OhILAs] Length = 451 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 61/110 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++IL+ +D+ +MR + KAL K GY + NG +K+ E L+L D+ MP MD Sbjct: 1 MNKRILIIDDEKNMRWAIKKALEKEGYNIYEAENGQDGLEKLEEIYPDLILLDLRMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E +R E++ D+ V+ +T + ++ +SKPF + +L Sbjct: 61 GMEALQRIKEINQDIPVIMLTAHGTMESAVEAMKLGALDYISKPFDIEEL 110 >gi|148658128|ref|YP_001278333.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148570238|gb|ABQ92383.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 1039 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEM 59 + IL+ ED+ +R+ ++ L GY V NG A V P LLLTD+VMP M Sbjct: 914 ETILVVEDEPTVRQLAVRILRDYGYTVFEAGNGHEAQQVVTTLAGAPVHLLLTDLVMPGM 973 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELA P ++F++G+A PD L KPF L+ +V RLL Sbjct: 974 SGVELATWFQTRYPGASILFMSGYARQL--PDGVDNPTIAFLQKPFSRHTLLTQVRRLL 1030 >gi|77464081|ref|YP_353585.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77388499|gb|ABA79684.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 945 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+A+D+ D+ R L+ L AG EVV C++ A ++++P + LL+TD MP++ Sbjct: 823 RTILVADDNADVLRVLVAFLEGAGAEVVPCSDPRDALAALQDDPRIWDLLVTDYDMPQIS 882 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L R A +L PDL V+ IT + AP+ L KP L++ R + Sbjct: 883 GADLCRAANDLAPDLPVLLITALPDWRSRISAPAPRFTAELGKPLGRATLLDAAERAIGA 942 Query: 121 K 121 K Sbjct: 943 K 943 >gi|300771641|ref|ZP_07081516.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761630|gb|EFK58451.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 225 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL ED+ + L L G+ V C+NG A+ +E+ + LLL D++MP MDG EL Sbjct: 4 ILYVEDEAGLAMILSDTLRSHGFAVTHCDNGGEAFSTFQEQKYDLLLIDVMMPVMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 A++ +D D+ ++F+T + KPF + +L+ + L N Sbjct: 64 AKKVRGMDTDVPIIFLTARTQTEDVVAGFHLGANDYIKKPFKIEELIVRIEALFKYYN 121 >gi|254524902|ref|ZP_05136957.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas sp. SKA14] gi|219722493|gb|EED41018.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas sp. SKA14] Length = 799 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + IL+AED+DD+R + AL GY V+ ++G SA ++ E P LL +D+VMP M Sbjct: 678 ETILVAEDNDDVRAHTVDALRVLGYRVLEAHDGPSAL-RLLERPDTTVDLLFSDVVMPGM 736 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL R E PD+ V+F +G+ S + A +L KPF DL V L Sbjct: 737 SGWELVREVRERWPDVAVLFTSGYPRDHDAVGSQG-RAAALLPKPFTRSDLAQAVRTAL 794 >gi|217979631|ref|YP_002363778.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2] gi|217505007|gb|ACK52416.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2] Length = 839 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL ED++ +R F +AL GY V+ +G A + V P L+++D+VMPEMDG Sbjct: 721 ILLVEDEEAVRAFAARALASRGYSVLQAGSGIEALEVVDRNPGKIDLVVSDVVMPEMDGP 780 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + + KV+F++G+A A + + ++ L KPF L+ L+ V Sbjct: 781 TMFGELRKRGVKAKVIFVSGYAEEAFSKNLPEGEDFAFLPKPFSLKQLIEAV 832 >gi|294010587|ref|YP_003544047.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] gi|292673917|dbj|BAI95435.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] Length = 687 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE- 58 ++ +L+ EDDD +R + + L + GY V+ N+GA+A + + LL TD+++P Sbjct: 559 DETVLVCEDDDKVRAYTVDVLKELGYRVIEANDGAAALRALDAASQSIDLLFTDVILPGG 618 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G ++A++A P LKV+F TG+A A+ ++L+KPF +L +V +L Sbjct: 619 MTGADIAQQARAQQPGLKVLFATGYARNAIIHHGRLDPGVELLTKPFTYAELATKVRDML 678 >gi|237800711|ref|ZP_04589172.1| response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023570|gb|EGI03627.1| response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 125 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDEPLILMLLADYLAGEGYRVLQAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L +++ LL Sbjct: 69 QIAEPAVMLRPELKVIFISGYPAEILDSGSPIALKAPILAKPFTMETLQSQIQALLA 125 >gi|158523273|ref|YP_001531143.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512099|gb|ABW69066.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 639 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59 + ILL ED++ +R+ + + L + GY V+ +G A R +P LLLTD++MP M Sbjct: 517 TEAILLTEDEERVRKIVARMLMRYGYTVMEAGDGREAQRLFRAAHQPVKLLLTDMIMPGM 576 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ELA PDLKV+ ++G+ AL + + + + KPF L +V LL Sbjct: 577 NGLELAVSLRGAQPDLKVLCMSGYTDTALF-EGVKNEGFEFIHKPFTPTTLAAKVRELL 634 >gi|167033382|ref|YP_001668613.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859870|gb|ABY98277.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 688 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-MD 60 ++ILL ED +R + + L + GY+V + NG +A + R E LLL+DI +P ++ Sbjct: 569 RRILLIEDQAALRMVVGEVLEELGYQVDAFENGPTALAHLQRGERPDLLLSDIGLPGGLN 628 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A R E PD+KV+FITG+ A D + VL+KPF L L V LL Sbjct: 629 GRQVAERCRERYPDIKVLFITGYDESAALSDGQLLQGTLVLTKPFELEVLAERVRELL 686 >gi|161522840|ref|YP_001585769.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|160346393|gb|ABX19477.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] Length = 583 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 Q +L+ +D++ + R L GYE V ++ +A+D V +P F +++TD MP + Sbjct: 465 QVVLVIDDEETLVRLAEDVLADLGYEPVGFSSSEAAWDAVNADPARFDVVVTDHTMPNLT 524 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++LA R DL V+ +GF+ +L ++ A + VL KP RDL + + R+L Sbjct: 525 GLQLAARIAGRRADLPVIMCSGFSTASLEREARALGVSMVLRKPLKSRDLADALARVL 582 >gi|104782823|ref|YP_609321.1| response regulator FleR [Pseudomonas entomophila L48] gi|95111810|emb|CAK16534.1| response regulator FleR [Pseudomonas entomophila L48] Length = 456 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+LL EDD +R+ L L G+ ++ + A V EPFSL+++D+ MP MD Sbjct: 1 MDIKVLLVEDDRTLRQALADTLEIGGFAHLAVGSAEEALQAVAREPFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L + P L V+ +T AAV D+ L KPF + L++ V R Sbjct: 61 GHQLLAQLGRHHPQLPVLLMTAHAAVERAVDAMRQGAVDYLVKPFEPKALISLVER 116 >gi|254292633|ref|YP_003058656.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254041164|gb|ACT57959.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 872 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +I+L ED+D +R L GY+V+ +G A + ++E LL++D+V+P MDG Sbjct: 750 RIMLVEDEDSVRGLASHLLSTFGYQVIEAADGEEALELIKENAGQIDLLISDVVLPGMDG 809 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + A + +VMFI+G+A L + + L KPF LR L V L I Sbjct: 810 PALLKEAKQYLTGARVMFISGYAERDLAKTLDEEREISFLPKPFTLRQLAERVKDELNI 868 >gi|94265224|ref|ZP_01288985.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454314|gb|EAT04624.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 609 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++ +LL ED+ + L + GY V++ + A EE LL+TD+VMPE++ Sbjct: 484 HETVLLVEDEPAILTLAESLLSRLGYTVLAAATPSEALRLAEEETRIDLLITDVVMPEIN 543 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ELA R L P L V++++G+ A ++ + + KPF L DL ++ +LT Sbjct: 544 GRELAERLAALRPGLLVLYMSGYPAEVVSRQAMLGAGVHFIQKPFTLEDLAAKIREVLTA 603 Query: 121 K 121 K Sbjct: 604 K 604 >gi|94264020|ref|ZP_01287821.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455613|gb|EAT05798.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 390 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 58/115 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD MR+ L L A + C +G A +++ PF ++LTD++MP G Sbjct: 5 NPPILVIDDDLRMRQLLRDTLAGADFSAELCADGREAAQRLQAGPFDVILTDLLMPHFSG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 IE+ +A DPD V+ ITG V ++ + KPF +L+ V R Sbjct: 65 IEILEQALAADPDCAVVLITGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVRR 119 >gi|224367903|ref|YP_002602066.1| two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein) [Desulfobacterium autotrophicum HRM2] gi|223690619|gb|ACN13902.1| two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein) [Desulfobacterium autotrophicum HRM2] Length = 879 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N KILL +D+ + + KAL K GY+VV + A + + +P F L++TD+ MP M Sbjct: 754 NGKILLIDDEPAIIGWASKALSKMGYQVVGMTSPLEAIETFKSDPENFDLVITDLTMPRM 813 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN-AKVLSKPFHLRDLVNEVNRLL 118 G+EL+ T PD+ ++ TGF+ L+PD ++VL KP + +L + + L Sbjct: 814 TGLELSSIITAKRPDIPIILCTGFSE-ELSPDKMKHHGISRVLMKPMVVDELSDAIEETL 872 Query: 119 T 119 T Sbjct: 873 T 873 >gi|91203464|emb|CAJ71117.1| strongly similar to sigma 54 response regulator [Candidatus Kuenenia stuttgartiensis] Length = 448 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 +KIL+ +DD + + L GY + NGA A +++ ++P ++++LTD VMPEMDG Sbjct: 2 KKILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 I+L + +++ + V+ +T + V+ ++ + ++KPF +LV + ++L ++ Sbjct: 62 IQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQMQ 121 >gi|193213014|ref|YP_001998967.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193086491|gb|ACF11767.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 694 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 Q IL+ +D+ + + L K Y V+S + A + V E LLLTD+VMPEM Sbjct: 577 QTILVVDDNGTILYIVKTVLEKNNYRVLSTTSAQEAINIVTNSETRVDLLLTDVVMPEMS 636 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G EL+++ + P LK +F++GF+ N + A +N + +SKPF +R+ + +L+ Sbjct: 637 GQELSKKLISILPHLKTIFMSGFSKDLTNLNELA-ENERFISKPFKMREFTATIKAMLS 694 >gi|167033147|ref|YP_001668378.1| response regulator receiver protein [Pseudomonas putida GB-1] gi|166859635|gb|ABY98042.1| response regulator receiver protein [Pseudomonas putida GB-1] Length = 116 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 11/119 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 +L+ EDDD +R +++ L + GY V+ + A+A +V E+P +L++TD+ +P+M Sbjct: 2 HLLVVEDDDIVRMLMVEVLDELGYNVIEAEDAAAAL-RVLEDPNQALALMMTDVGLPDMR 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA +A EL P L V+F +G+A DS N P+ ++ KPF + L ++V +L Sbjct: 61 GELLAGKARELRPLLPVLFASGYA------DSFNVPEGMHLIGKPFSIDQLRDKVVAIL 113 >gi|256820310|ref|YP_003141589.1| two component, sigma54 specific, transcriptional regulator, Fis family [Capnocytophaga ochracea DSM 7271] gi|256581893|gb|ACU93028.1| two component, sigma54 specific, transcriptional regulator, Fis family [Capnocytophaga ochracea DSM 7271] Length = 458 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL EDD + L K L + GYEVV C N A +K SL+ TD+ +P+ D Sbjct: 1 MKNPILLVEDDVVFSKMLGKFLERNGYEVVRCYNLEEA-EKSLNASLSLVFTDLRLPDGD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 GI ++ E+ PDL V+ +T +A V+ ++ +SKPF D++N Sbjct: 60 GINFLKKVKEVYPDLPVVVMTSYAEVSTAVEAMKLGAFDYISKPFQQEDVLN 111 >gi|157363492|ref|YP_001470259.1| response regulator receiver protein [Thermotoga lettingae TMO] gi|157314096|gb|ABV33195.1| response regulator receiver protein [Thermotoga lettingae TMO] Length = 119 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR L + KAGYEVV +NGA A +K RE ++ DI MPEM Sbjct: 1 MAKRVLIVDDAAFMRMLLKDIITKAGYEVVGEASNGAEAVEKYRELKPDIVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +GIE ++ E PD K++ + A+ ++ + KPF +V + ++ Sbjct: 61 NGIEAIKKIREFAPDAKIIVCSAMGQQAMVVEAIQAGAKDFIVKPFQHSRVVEALQKI 118 >gi|308272284|emb|CBX28890.1| ATP-dependent protease La 2 [uncultured Desulfobacterium sp.] Length = 674 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 65/117 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D++ R L L K GY V + NG A + ++E+ L+LTD+ M +MDG++L Sbjct: 122 IIVVDDEEIARTNLEYILRKEGYAVSTAANGLEAINILKEQHVDLMLTDLKMEKMDGMQL 181 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ++ P K++ ITGFA V D+ L KP +L +L V +++ IK Sbjct: 182 LELSKKISPHTKIVMITGFATVNSAVDALKKGAFHYLPKPINLEELRQTVRQIIEIK 238 >gi|260428472|ref|ZP_05782451.1| sensory box histidine kinase/response regulator [Citreicella sp. SE45] gi|260422964|gb|EEX16215.1| sensory box histidine kinase/response regulator [Citreicella sp. SE45] Length = 205 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 K+L+ EDD R L +ALG G EV C A D++ + F ++++DI +P +DGI Sbjct: 83 KVLVVEDDPQFRHTLPEALGLLGVEVTICLQADEALDRLARQSFEVMVSDIRIPGPVDGI 142 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +LAR A P L V ITGF + + VL KP LR L N ++ + +N Sbjct: 143 DLARTAARRYPALPVPLITGFGST-----RRESADFVVLRKPVRLRVLANPIHTGVAAQN 197 >gi|309779206|ref|ZP_07673969.1| sensory box sensor histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] gi|308922010|gb|EFP67644.1| sensory box sensor histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] Length = 795 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 9/118 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD +R + + L G +GA A + +R E F +L TD++MP+M GIE Sbjct: 675 RILVVEDDASLRGAVCELLMLIGITPQQAASGAQALEALRAEAFDVLFTDVIMPDMSGIE 734 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 LA+ A L P+L+V+F +G NP N A L KP+ L L + + ++ Sbjct: 735 LAQHAFALHPELRVVFASG------NPIPNHDSFAFRWTALRKPYTLDQLQHALQSMM 786 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 N+ IL+ EDD +R ++ L GY V+ NN A V L TD+VMP + Sbjct: 526 NETILVVEDDAKVRETVVDLLSGLGYAVLKANNAEQALAVVESGVHIDLPFTDVVMPGAL 585 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ +RA + P LKV++ +G+ A+ ++LSKP+ + L ++ ++L Sbjct: 586 RSTEMVQRAVQTLPALKVLYTSGYTQNAIVHGGRLDPGVELLSKPYSRQQLAFKIRQVL 644 >gi|94263432|ref|ZP_01287245.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94271768|ref|ZP_01292012.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450346|gb|EAT01573.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456162|gb|EAT06301.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 461 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ MR FL L + G+ V +G +A ++R+E F LL++DI MP +G+E Sbjct: 3 RILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN--APKNAKV--LSKPFHLRDLVNEVNRLLT 119 L +A +L P+L V+ +T FA+ PD A KN L+KPF + ++ + V+ L+ Sbjct: 63 LLDQARQLQPELPVVLVTAFAS----PDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALS 118 >gi|332558956|ref|ZP_08413278.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] gi|332276668|gb|EGJ21983.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] Length = 945 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+A+D+ D+ R L+ L AG EVV C++ A ++++P + LL+TD MP++ Sbjct: 823 RTILVADDNADVLRVLVGFLEGAGAEVVPCSDPRDALAALQDDPRIWDLLVTDYDMPQIS 882 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L R A +L PDL V+ IT + AP+ L KP L++ R + Sbjct: 883 GADLCRAANDLAPDLPVLLITALPDWRSRMSAPAPRFTAELGKPLGRATLLDAAERAIGA 942 Query: 121 K 121 K Sbjct: 943 K 943 >gi|315223366|ref|ZP_07865225.1| transcriptional regulatory protein ZraR [Capnocytophaga ochracea F0287] gi|314946697|gb|EFS98686.1| transcriptional regulatory protein ZraR [Capnocytophaga ochracea F0287] Length = 458 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL EDD + L K L + GYEVV C N A +K SL+ TD+ +P+ D Sbjct: 1 MKNPILLVEDDVVFSKMLGKFLERNGYEVVRCYNLEEA-EKSLNASLSLVFTDLRLPDGD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 GI ++ E+ PDL V+ +T +A V+ ++ +SKPF D++N Sbjct: 60 GINFLKKVKEVYPDLPVVVMTSYAEVSTAVEAMKLGAFDYISKPFQQEDVLN 111 >gi|241661648|ref|YP_002980008.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240863675|gb|ACS61336.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 734 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R + L + GY V++ NG +A + + P LL TD++MP + Sbjct: 457 ETILVVEDDTDVRLTAVDMLTQLGYRVLTAANGEAALELMNSGTPIDLLFTDVIMPGPIK 516 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL+ RA + P L V+ ++G+ + D P +L KP+ DL V +L Sbjct: 517 GGELSIRAAQRVPPLPVLLVSGYTRDEILHDGRLPPGVTLLDKPYRRDDLARMVRNVL 574 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD R L + L G + ++ A P +LLTD+ +P G +L Sbjct: 608 VLLVEDDTASREALQEVLATFGLQCLAAATAEDALALAHTRPVQVLLTDLTLPGRSGADL 667 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAP-KNAKVLSKPFHL 107 AR L P + V+ +TG+ A A + P A+VL+KP L Sbjct: 668 ARALRPLHPHMDVLLMTGYGAHA---EIGEPIPGARVLAKPVEL 708 >gi|114777417|ref|ZP_01452414.1| response regulator of hydrogenase 3 activity (sensor HydH) [Mariprofundus ferrooxydans PV-1] gi|114552199|gb|EAU54701.1| response regulator of hydrogenase 3 activity (sensor HydH) [Mariprofundus ferrooxydans PV-1] Length = 463 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED++D R L +AL ++G+ V + N A + + F L L D+ +P+ +GIEL Sbjct: 7 ILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGNGIEL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R DPD+ ++ +TG+A V D+ L KPF + +++ ++ L+ + Sbjct: 67 MREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKTRQ 124 >gi|94267328|ref|ZP_01290847.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93452050|gb|EAT02742.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 454 Score = 67.4 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 58/115 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD MR+ L L A + C +G A +++ PF ++LTD++MP G Sbjct: 5 NPPILVIDDDLRMRQLLRDTLAGADFSAELCADGREAAQRLQAGPFDVILTDLLMPHFSG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 IE+ +A DPD V+ ITG V ++ + KPF +L+ V R Sbjct: 65 IEILEQALAADPDCAVVLITGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVRR 119 >gi|196231989|ref|ZP_03130845.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224111|gb|EDY18625.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 542 Score = 67.4 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMD 60 + ILL ED+D++R + L GY V+ + A E + L+TD+VMP + Sbjct: 423 ETILLVEDEDEIRELAVLMLEGKGYHVIPAPDAEKALILAEEHGSGIQALITDVVMPRIS 482 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++LA + P+L+++F++G ++ P++ A A+ L KP+ L+ V ++L Sbjct: 483 GVQLAEILAKKMPELRILFVSGHCRESIQPETLAENRAEYLQKPYRSDSLIAAVQQVL 540 >gi|157694108|ref|YP_001488570.1| stage 0 sporulation initiation phosphotransferase F [Bacillus pumilus SAFR-032] gi|194016266|ref|ZP_03054880.1| sporulation initiation phosphotransferase F (Stage 0sporulation protein F) [Bacillus pumilus ATCC 7061] gi|157682866|gb|ABV64010.1| stage 0 sporulation initiation phosphotransferase F [Bacillus pumilus SAFR-032] gi|194011739|gb|EDW21307.1| sporulation initiation phosphotransferase F (Stage 0sporulation protein F) [Bacillus pumilus ATCC 7061] Length = 124 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V+ +L+L D+ +P MD Sbjct: 1 MNEKILIVDDQYGIRILLNEVFHKEGYQTFQAANGLQALDIVKNHRPNLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNE 113 GIE+ +R +D D++V+ +T + + + +S +KPF +RD V E Sbjct: 61 GIEILKRMKLIDEDIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKE 116 >gi|309791720|ref|ZP_07686210.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308226213|gb|EFO79951.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 329 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 13/125 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN++IL+ +DD D+RR ++ AL + Y + + ++ +A + P LL TDI MP M Sbjct: 4 MNKRILVVDDDPDIRRIVLLALSDDSPYTIQAVSSAEAALLHISRHPVDLLFTDIRMPGM 63 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRDLVNE 113 G+EL R+ ELDP+ V+ T ++P+ P+ A+ +L+KP L + Sbjct: 64 SGLELVRQVHELDPNTAVVVFT------VSPEELTPQRAEELKVDYLLAKPVEPDKLRHV 117 Query: 114 VNRLL 118 V+ LL Sbjct: 118 VDTLL 122 >gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216] gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216] Length = 217 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL +D+DD+ F+ L KAGYEV + NGA + L+L D++MP MD Sbjct: 1 MSHRILLIDDEDDILEFIRYNLTKAGYEVYTARNGAEGLQQAAAHRPHLILLDVMMPTMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GIE RA DP LK + +A+ A A +SKP + L++ + + Sbjct: 61 GIETC-RALRCDPALKETMVVFLSALGEEEQQLAGFGAGADDYISKPIKPKLLISRIQAI 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|83944498|ref|ZP_00956951.1| sensory box sensor histidine kianse/response regulator [Sulfitobacter sp. EE-36] gi|83844700|gb|EAP82584.1| sensory box sensor histidine kianse/response regulator [Sulfitobacter sp. EE-36] Length = 761 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ ++ A + ++ ++ +TD++MP MDG Sbjct: 645 VLLVEDEAPVRAFASRALRMRGYTVLEADSAEMALKTLEDQALNIDVFVTDVIMPGMDGP 704 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R A + P + V+F++G+A + A N+ L KPF L +L N VN Sbjct: 705 TWVREALKARPGVPVVFVSGYAEDSFGDAQMAIPNSVFLPKPFSLTELTNTVN 757 >gi|298530458|ref|ZP_07017860.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509832|gb|EFI33736.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 765 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL +D +++ + ++AL GY V ++G A++ +E+P + LL+TD+ MP G Sbjct: 648 ILFVDDQEEIVNWGVRALESLGYMVCGFSSGDRAWEVFKEQPEDYDLLVTDLSMPGTSGQ 707 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+ EL P L V+ TG A A P+ +A + ++ KPF + + + LL Sbjct: 708 ELARKVKELRPGLPVIMCTGHAG-ADTPEKSALQVDALMQKPFSMGEFSRLIRSLL 762 >gi|114777665|ref|ZP_01452625.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114551881|gb|EAU54415.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 763 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + ILL +D+D++R + L GY+V+ +G A E E L+L+DIVMP M Sbjct: 643 ETILLVDDEDNLRDTTSEVLQGLGYQVIEACDGDQALRLYLEHHEQIELILSDIVMPGMG 702 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+ELAR +L+ ++ ++ TG+ + + N VLSKP+ ++R+L+ Sbjct: 703 GVELAREIRKLNDNIPIILATGYDRALVTSGNADISNCHVLSKPYSFEAASQMISRMLS 761 >gi|224369511|ref|YP_002603675.1| two-component protein, sensory box histidine kinase/response regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223692228|gb|ACN15511.1| two-component protein, sensory box histidine kinase/response regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 1065 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNN--GASAYDKVREEPFSLLLTDIVMPEMD 60 + I+L EDD + + + L GY V N GA + + LL+TD+++PEM+ Sbjct: 941 ETIMLVEDDPAILKLAQQILSGLGYNVWPSNTPKGAVTWAENHTGKIHLLITDVILPEMN 1000 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELA + L PDLK +F++G+ A A+ + + KPF +L V ++L Sbjct: 1001 GLELANKLQSLHPDLKCIFMSGYTADAIAHHGVLDGDVTFIQKPFSKLNLAKIVRKVL 1058 >gi|148547449|ref|YP_001267551.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148511507|gb|ABQ78367.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 688 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE-M 59 ++ILL ED +R + + L + GY V + NG SA ++ E P LLL+D+ +P + Sbjct: 569 KRILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQSGERP-DLLLSDVGLPGGL 627 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A R E PDLKV+ ITG+ A D + VL+KPF L L V LL Sbjct: 628 NGRQVAERCRERYPDLKVLLITGYDESAALSDGQPLQGTLVLTKPFELEALAERVRELL 686 >gi|188591971|ref|YP_001796569.1| multi-site sensor histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|170938345|emb|CAP63330.1| putative multi-site Sensor histidine kinase [Cupriavidus taiwanensis LMG 19424] Length = 1478 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EM 59 ++ +L+ EDD+D+R +++ L GY V+ + SA V R P LL +D+VMP + Sbjct: 1196 SETVLVVEDDEDVRATVVEMLASLGYHVLRARDAHSALAIVERGVPVDLLFSDVVMPGPL 1255 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+ E PD+ V+F +G+A + D ++LSKP+ L +V +L Sbjct: 1256 RSTELARKLRERLPDVGVLFTSGYADSVIVHDGRLDAGIELLSKPYTHEALARKVRHVL 1314 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+DD+R ++ + L AG+ VV +G +A + R +L+++D++MP +DG L Sbjct: 673 VLVADDNDDLRDYMRRLLSAAGHRVVVAADGEAALAQARAHAPALVVSDVMMPRLDGFGL 732 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 RA D +L+ V+ ++ A L KPF R+L+ V Sbjct: 733 L-RALRADAELRETPVLLLSARAGEEARVSGLGSGADDYLVKPFSARELLARV 784 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +DD +R + L G + ++ A+A + +LLTD+ + G+EL Sbjct: 1344 VLCVDDDALVRAGTAEVLRAYGLHALEADSEAAALAMLAGNVVDVLLTDVALAGDSGVEL 1403 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPF 105 A A P L V+F TG+ A+ L P A A VL KP+ Sbjct: 1404 ALAARARHPGLGVVFATGY-ALDLTPAQRAGLGAVAVLRKPY 1444 >gi|149182440|ref|ZP_01860915.1| two-component response regulator [Bacillus sp. SG-1] gi|148849833|gb|EDL64008.1| two-component response regulator [Bacillus sp. SG-1] Length = 120 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 62/116 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D +R L + L K GY NG A D V + L+L D+ +P MD Sbjct: 1 MDEKILIVDDQFGIRILLNEVLQKEGYNTFQAANGIQALDIVDKHSPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE+ +R + DPD++V+ +T + + + ++ +KPF + D+ V + Sbjct: 61 GIEILKRMKQKDPDIRVIIMTAYGELDMIQEAKDLGAITHFAKPFDIDDIRQAVKK 116 >gi|42523020|ref|NP_968400.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100] gi|39575225|emb|CAE79393.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100] Length = 468 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 56/107 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D++ +R FL L K GYE+ +G A D + ++ F ++++D+ MP + Sbjct: 1 MKSRILVVDDEESIREFLEIMLKKEGYEITLAEDGQKAKDLLAKKTFDMIISDLQMPHVT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 GIEL + E PD M IT F ++ L+KPF + Sbjct: 61 GIELLKHVKESYPDTVFMLITAFGTTETAVEAMKMGAYDYLTKPFKI 107 >gi|329114130|ref|ZP_08242892.1| Blue-light-activated protein [Acetobacter pomorum DM001] gi|326696206|gb|EGE47885.1| Blue-light-activated protein [Acetobacter pomorum DM001] Length = 688 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 6/117 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + IL+ +D+ +R L +AGYEV+ +GA A + VR P +L++ D++MP M+G Sbjct: 575 RAILVVDDEPGVRAVTAGFLSRAGYEVLESASGAEAVETVRNRPDIALVVMDVMMPGMNG 634 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E A+R +L V+F+TG+A + + P+ VL KP+ L+ +V +L Sbjct: 635 GEAAQRIHAERAELPVLFVTGYADLGI-----LPQGVAVLHKPYTRDALLGDVKAML 686 >gi|260428060|ref|ZP_05782039.1| sensory box sensor histidine kianse/response regulator [Citreicella sp. SE45] gi|260422552|gb|EEX15803.1| sensory box sensor histidine kianse/response regulator [Citreicella sp. SE45] Length = 755 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ N A + + +E + +TD+VMP M+G Sbjct: 639 VLLVEDEAPVRAFAARALRLRGYTVLEACNAEEALEMLEDESLKVDVFVTDVVMPGMNGP 698 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A + P +V+F++G+A A + + N+ L KPF L +L V++ L Sbjct: 699 SWVREALKARPGTRVVFVSGYAEDAFSEGGDPVPNSVFLPKPFSLNELTETVHQQL 754 >gi|149184396|ref|ZP_01862714.1| two-component response regulator [Erythrobacter sp. SD-21] gi|148831716|gb|EDL50149.1| two-component response regulator [Erythrobacter sp. SD-21] Length = 827 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 +LL ED+D +R +AL +AGY V + +G ++ E F L+++D+VMP MDG Sbjct: 705 LLLVEDEDMVRAVAERALTRAGYAVTTARDGEEGLAQIANGETEFHLIVSDVVMPAMDGP 764 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR ++ P + ++F++G+A L D + N + KPF ++ + +V+ +L Sbjct: 765 AMARAIRKVKPKVPILFMSGYAEEQLRNDIDI-DNMYFIPKPFSVQQINAKVSEVL 819 >gi|55980964|ref|YP_144261.1| response regulator [Thermus thermophilus HB8] gi|55772377|dbj|BAD70818.1| response regulator [Thermus thermophilus HB8] Length = 322 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/81 (46%), Positives = 46/81 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+AEDD R L +AL G EV +G A D E P L+LTD+ MP MD Sbjct: 1 MNPTVLVAEDDPVQRLLLRRALEPLGVEVRLARHGREALDLALEAPPHLVLTDLHMPHMD 60 Query: 61 GIELARRATELDPDLKVMFIT 81 G+EL RR LDP L V+ T Sbjct: 61 GLELTRRLKALDPLLPVLLFT 81 >gi|325277536|ref|ZP_08143132.1| response regulator receiver protein [Pseudomonas sp. TJI-51] gi|324097331|gb|EGB95581.1| response regulator receiver protein [Pseudomonas sp. TJI-51] Length = 116 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 9/118 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEMD 60 +L+ EDDD +R +++ L + GY V+ + ASA KV E +P +L++TD+ +P+M Sbjct: 2 HLLVVEDDDIVRMLMVEVLDELGYSVIEAED-ASAALKVLEDPNQPLALMMTDVGLPDMR 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA +A +L P L V+F +G+A + P+ ++ KPF + L ++V +L Sbjct: 61 GEALAAKARKLRPLLPVLFASGYAE-----NITVPEGMHMIGKPFSIDQLRDKVQAIL 113 >gi|237800100|ref|ZP_04588561.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022956|gb|EGI03013.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 698 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 ++ IL+ +D+ +R +++ L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 577 DETILVVDDEPAVRLLIVELLEDLGYAVLQAERGADALSILQSKTAIDLLVTDVGLPGGM 636 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A E+ PDLK++F+TG+A AL D+ P VL KPF + +L++ V LL Sbjct: 637 NGRQVADAAREVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELISRVTELL 695 >gi|149922395|ref|ZP_01910829.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149816757|gb|EDM76247.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 654 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 50/81 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ ED+ +RR + L +AGY VV +A + R P +LLTD+VMP DG+ Sbjct: 531 RSVLVVEDEAPVRRIVAALLQRAGYTVVEAEGVEAALELARARPVDVLLTDVVMPVFDGL 590 Query: 63 ELARRATELDPDLKVMFITGF 83 ELA++ DP L+V+F +G+ Sbjct: 591 ELAKQLCSNDPQLRVVFTSGY 611 >gi|168699668|ref|ZP_02731945.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 964 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL +D+ +R L +AGY V+ +G A + E +L++ D+ MP M G Sbjct: 844 ILLVDDEQMIRDLGFAVLSRAGYHVLLAEDGQEAVEVFTREWQDIALVILDVTMPRMSGS 903 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E +R +DP+++V+F TG+AA L S + +LSKP+ ++LV V LTI Sbjct: 904 EASRHMIRIDPNVRVLFSTGYAADDL---SELDGSQGLLSKPYRPQELVTAVRAALTI 958 >gi|189424231|ref|YP_001951408.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189420490|gb|ACD94888.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 447 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 61/114 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD MR+ + L G V C++GA A + V + L++TD++MP++DG+EL Sbjct: 6 ILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQIDGMEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A + +PD V+ ITG+ ++ + L KPF L+ V R L Sbjct: 66 LNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRAL 119 >gi|114567918|ref|YP_755072.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338853|gb|ABI69701.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 123 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 68/119 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++I++ +D +RR L + + G+EV + +G A +KV + S+LL D+ MP M+ Sbjct: 1 MKRRIMIVDDQKGVRRLLEELFKREGWEVYAAADGKEAIEKVGQFQPSILLIDMKMPNMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E +++ E +L ++ +T + + + + K ++KPF + L +EVNR++ Sbjct: 61 GLEASQKILEKHQELAIIMMTAYGEMEVVKRALESGVRKCITKPFDILYLRDEVNRIVA 119 >gi|168702421|ref|ZP_02734698.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 711 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + +LL ED+ +R L AGY+V +G A + + P LLLTD+VM M G Sbjct: 582 ETVLLVEDERPVRVLAALTLRGAGYKVAEAGSGEEALELYKTRGPIHLLLTDVVMSGMSG 641 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELA E DP L++++++G+ +A+ L KPF + DL+ +V ++L+ Sbjct: 642 RELADALREQDPGLRLLYMSGYTDDPRVRHGIESADAEFLQKPFEVDDLLTKVRQVLS 699 >gi|194335983|ref|YP_002017777.1| histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194308460|gb|ACF43160.1| histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 585 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-ASAYDKVREEPFSLLLTDIVMPEMDG 61 + ILL +D+ ++ L + L GY V + N A + LLLTD++MPEM+G Sbjct: 463 ETILLVDDESEVLELLKEMLEHYGYNVYTANPARAILIAEQHRGGIDLLLTDVMMPEMNG 522 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA+R + PD+KV+F++G++ ++ D+ + KPF + L V +L Sbjct: 523 FELAQRIKSVVPDIKVLFMSGYSTDVISDDTIIQDGVNFIQKPFSFKALSVAVRAIL 579 >gi|260459326|ref|ZP_05807581.1| multi-sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259034880|gb|EEW36136.1| multi-sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1050 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 ++ I++ ED+D +R +AL + GY V+ A V+ + SLL TD+VMPEM Sbjct: 930 DEIIMVVEDEDRVRLMAAEALRELGYSVLEMQGPREALAAVQNGQVPSLLFTDVVMPEMS 989 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + + P LKV++ TG+ A+ + ++L+KP+ + +L ++ ++L Sbjct: 990 GRELVDQVKQAHPSLKVLYTTGYTRNAIVHNGTLDFGTELLTKPYTIDELAEKIRKVLDR 1049 Query: 121 K 121 K Sbjct: 1050 K 1050 >gi|52082247|ref|YP_081038.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787639|ref|YP_093468.1| Spo0F [Bacillus licheniformis ATCC 14580] gi|319648121|ref|ZP_08002338.1| sporulation initiation phosphotransferase F [Bacillus sp. BT1B_CT2] gi|52005458|gb|AAU25400.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52350141|gb|AAU42775.1| Spo0F [Bacillus licheniformis ATCC 14580] gi|317389756|gb|EFV70566.1| sporulation initiation phosphotransferase F [Bacillus sp. BT1B_CT2] Length = 124 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V+ + L+L D+ +P MD Sbjct: 1 MNEKILIVDDQYGIRVLLNEVFNKEGYKTFQAANGIQALDIVKNQRPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D ++V+ +T + + + +S +KPF + ++ + V L I Sbjct: 61 GIEILKRMKIIDEGIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKTYLPI 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|282890082|ref|ZP_06298614.1| hypothetical protein pah_c012o005 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500010|gb|EFB42297.1| hypothetical protein pah_c012o005 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 462 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 54/84 (64%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ +R FL + L + EVV+ +G A +++ PF +++TD+ MP++ GI Sbjct: 2 EKILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 ++ R+ E+ P+ V+ IT F ++ Sbjct: 62 DILRKCKEISPNTIVVVITAFGSI 85 >gi|188583019|ref|YP_001926464.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179346517|gb|ACB81929.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 807 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EM 59 ++ +L+ ED+ + +++LG+ GY ++ + A D+++ E +L +D+VMP M Sbjct: 687 DEVVLVVEDEPAVLEMAVESLGELGYRTLTATQASEALDRLQGPERIDILFSDVVMPGGM 746 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G++L+ A L P L+V+ +G+ AL+ D P + +LSKP+ +L ++ +L Sbjct: 747 NGVQLSVEARRLRPGLRVLLTSGYTGTALD-DQGVPADLPLLSKPYQREELATKMRLVL 804 >gi|222053910|ref|YP_002536272.1| response regulator receiver protein [Geobacter sp. FRC-32] gi|221563199|gb|ACM19171.1| response regulator receiver protein [Geobacter sp. FRC-32] Length = 140 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 8/122 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +DD L + + G + NG A +++ PF+LLLTD+ MP MDG+EL Sbjct: 6 ILFVDDDILFLALLRECFMQRGIVIQCAENGEDALQMIQQRPFALLLTDLQMPGMDGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKN----AKVLSKPFHLRDLVNEVNRLLTI 120 A +A +L PDL ++ TG A+ P+ A A+V+ KP +L V ++++ Sbjct: 66 AGKARKLMPDLPIVLCTG----AVTPEVCALAEEIGIAQVVRKPIRFSELFAIVGNIVSL 121 Query: 121 KN 122 + Sbjct: 122 QQ 123 >gi|149173453|ref|ZP_01852083.1| transcriptional regulatory protein zraR [Planctomyces maris DSM 8797] gi|148847635|gb|EDL61968.1| transcriptional regulatory protein zraR [Planctomyces maris DSM 8797] Length = 459 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 63/118 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N+ +L+ ED++ +R L + L GYE + + A A + R+ F++ + D+ +P+ D Sbjct: 11 LNRSVLIVEDEEVIRTSLAEFLTSEGYETMQASTVARALELARDRDFNVAICDVQLPDGD 70 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL RR + P + V+ IT +A V + L KP DL +++NRL Sbjct: 71 GIELLRRLQNIKPSIFVLIITAYATVENTISAFKAGAFDYLVKPVIFDDLSHKLNRLF 128 >gi|299132210|ref|ZP_07025405.1| response regulator receiver protein [Afipia sp. 1NLS2] gi|298592347|gb|EFI52547.1| response regulator receiver protein [Afipia sp. 1NLS2] Length = 125 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 KIL+A+D++ MR + +A+ G+++ + +GA A D + F LLLTDI MP MDG Sbjct: 3 KILIADDEESMRLLVARAIAMDGHDITTAQDGAEALDIITRANGAFDLLLTDIKMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I LA P L ++ +TGFA V++KPF + D+ V Sbjct: 63 IALALAVARDYPKLTIVLMTGFADQRERASGLEAIVHDVVTKPFAIADIRTAV 115 >gi|112490624|pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b gi|112490625|pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b gi|112490626|pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b gi|112490627|pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b Length = 124 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 66/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L + +P MD Sbjct: 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLXMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 Query: 121 KN 122 K+ Sbjct: 122 KS 123 >gi|108760941|ref|YP_632415.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|34329419|gb|AAQ63912.1| mutant NtrC-like activator [Myxococcus xanthus] gi|108464821|gb|ABF90006.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 471 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 52/84 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+D+ RR + L + GYEV NGA A ++ E +++LTD+ MP+MDG+ Sbjct: 4 QRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQMDGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 L + A E D + +T FA+V Sbjct: 64 TLLKTAREQGSDATFVMMTAFASV 87 >gi|326385588|ref|ZP_08207222.1| two component, sigma54 specific, Fis family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209922|gb|EGD60705.1| two component, sigma54 specific, Fis family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 433 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 60/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I L +DD D+R L++ + AG+ V + + A + +++TDI MP +DGI Sbjct: 5 RIALVDDDPDLRTALVQTMTLAGFAVDAFSGAQEALGAIDRTYPGVVVTDIRMPVIDGIA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L +R + DPDL V+F+TG V + D+ L+KPF LV V R Sbjct: 65 LFQRLRDRDPDLPVIFMTGHGEVTMAVDAMKAGAWDFLTKPFAPETLVAAVRR 117 >gi|322419892|ref|YP_004199115.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320126279|gb|ADW13839.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 461 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 60/109 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KILL EDDD R L+ L +G+ + C++G D + EPF ++L+D+ +P+M+G Sbjct: 7 NIKILLIEDDDGSREALLILLKASGFTMKGCSSGKEGLDLLAGEPFDIVLSDLFLPDMNG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I++ R + P +V+ +TG + + ++KP ++ +L Sbjct: 67 IDILTRVKQDSPRTEVILVTGHGSAETAVQAMKKGAYDYITKPLNIDEL 115 >gi|218886356|ref|YP_002435677.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757310|gb|ACL08209.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 452 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 57/115 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +LL ED+ M + AL +AGYEV + + A +R+ PF L++TD+ +P M+G Sbjct: 3 KHSVLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +EL EL P V+ IT F V L + L KPF L+ V R Sbjct: 63 MELLEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVER 117 >gi|330821699|ref|YP_004350561.1| sensory box sensor histidine kinase/response regulator [Burkholderia gladioli BSR3] gi|327373694|gb|AEA65049.1| sensory box sensor histidine kinase/response regulator [Burkholderia gladioli BSR3] Length = 810 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ +L+ EDD ++ +I L GYEV+ N+ A +R LL TD+VMP + Sbjct: 536 SETVLVVEDDPSVQSTVIDTLTGLGYEVLKANDALQALAVIRSGAHIDLLFTDVVMPGPL 595 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+AR+A +L P+LK++F +G+ A+ ++LSKP+ + L ++ ++L Sbjct: 596 RSPEMARQAKQLLPNLKILFTSGYTRNAIVHGGRLDPGVELLSKPYSRQQLATKLRQMLA 655 Query: 120 I 120 + Sbjct: 656 V 656 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++L+ +DD D L G+ V+ + A + E +LLTD+ +P++D Sbjct: 690 VGRRVLVVDDDADSLEATAMLLEMGGHVVLRAEDARRALAVLDSEACDILLTDLALPDID 749 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ELAR+A P L+V+F +G ++ ++ L KPF L V ++ Sbjct: 750 GMELARQAVHAHPHLRVIFASGH---VVSKAADLAFAWTALQKPFDADQLFGAVQKI 803 >gi|83593013|ref|YP_426765.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Rhodospirillum rubrum ATCC 11170] gi|927310|gb|AAA85582.1| putative DNA-binding protein; two-component regulatory system [Rhodospirillum rubrum] gi|83575927|gb|ABC22478.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Rhodospirillum rubrum ATCC 11170] Length = 481 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 68/116 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AG+EV S ++ + V + L++TD++MP+ +G++L Sbjct: 4 ILVADDDRGIRTVLSQALTRAGHEVRSTGTASTLWSWVTDGQGDLVITDVIMPDENGLDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R ++ PDL+++ ++ + + + L KPF L ++VN V R L++ Sbjct: 64 IPRIKKIRPDLRIVVMSAQNTLLTAVKATERGAFEYLPKPFDLTEVVNVVRRALSL 119 >gi|295696126|ref|YP_003589364.1| response regulator receiver protein [Bacillus tusciae DSM 2912] gi|295411728|gb|ADG06220.1| response regulator receiver protein [Bacillus tusciae DSM 2912] Length = 120 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++K+L+ +D MR + + L K GYEVV NG A +K +E L+ DI MPEM Sbjct: 1 MSRKVLVVDDAAFMRMMIKEILTKHGYEVVGEAVNGIQAVEKFQELRPDLVTLDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGIE +R +DP+ KV+ + A+ D+ + KPF ++ V + L Sbjct: 61 DGIEALKRIRAIDPEAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVLEAVRKTL 119 >gi|215433453|gb|ACJ66692.1| sigma-54 dependent DNA-binding response regulator [Myxococcus fulvus HW-1] Length = 471 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 52/84 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+D+ RR + L + GYEV NGA A ++ E +++LTD+ MP+MDG+ Sbjct: 4 QRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQMDGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 L + A E D + +T FA+V Sbjct: 64 TLLKTAREQGSDATFVMMTAFASV 87 >gi|85857913|ref|YP_460115.1| response regulator receiver domain-containing protein [Syntrophus aciditrophicus SB] gi|85721004|gb|ABC75947.1| response regulator receiver domain [Syntrophus aciditrophicus SB] Length = 136 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ +R L + L + G+EV +G +A + R++ L++TDI+MPE+DGIE Sbjct: 12 RILVVEDDEPLRSVLRQILERTGHEVAEAADGRAAMEIQRQKGADLVITDIIMPEVDGIE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPK---NAKVLSKPFHLRDLVNEVNRLL 118 P +K++ I+G + V N + + L KPF L+++++ V+ LL Sbjct: 72 TIMVLRREFPSVKIIAISGGSRVGPREFLNLARVLGAHRTLHKPFALQEMLDAVDELL 129 >gi|66045685|ref|YP_235526.1| response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63256392|gb|AAY37488.1| Response regulator receiver [Pseudomonas syringae pv. syringae B728a] Length = 142 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 26 VLIVEDEPLILMLLADYLSGEGYRVLKAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 85 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L ++ +LL Sbjct: 86 QIAEPAIMLRPELKVIFISGYPAEILDSGSPIALKAPILAKPFTMDTLHTQIQKLLA 142 >gi|194336297|ref|YP_002018091.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194308774|gb|ACF43474.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1126 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL E++ D+ AL +AGY +S A R+ +LLTD+VMP+M+G Sbjct: 1006 ILLVENEHDILILCRAALEEAGYTTLSAETPREAIRLARQYNGEVDMLLTDVVMPDMNGC 1065 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +LA+ + PDLK +F++G+++ ++ + + KPF L+ L V+ LL N Sbjct: 1066 DLAKELQSIIPDLKTLFMSGYSSDVISRHEMLVERVNFIQKPFSLKLLTTMVHNLLNHAN 1125 >gi|330878834|gb|EGH12983.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 827 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ ++ + +R + LL+TD+ +P M+ Sbjct: 708 ETILIVDDEPTVRMLLTDALGDLGYTLIEASDSLAGLKLLRSDVHIDLLITDVGLPGGMN 767 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D KVL+KPF + L + V L+T Sbjct: 768 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGRKVLTKPFAIDVLASRVQELMT 826 >gi|258542118|ref|YP_003187551.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256633196|dbj|BAH99171.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256636255|dbj|BAI02224.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-03] gi|256639308|dbj|BAI05270.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-07] gi|256642364|dbj|BAI08319.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-22] gi|256645419|dbj|BAI11367.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-26] gi|256648472|dbj|BAI14413.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-32] gi|256651525|dbj|BAI17459.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654516|dbj|BAI20443.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-12] Length = 666 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 6/117 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + IL+ +D+ +R L +AGYEV+ +GA A + VR P +L++ D++MP M+G Sbjct: 553 RAILVVDDEPGVRAVTAGFLSRAGYEVLESASGAEAVETVRNRPDIALVVMDVMMPGMNG 612 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E A+R +L V+F+TG+A + + P+ VL KP+ L+ +V +L Sbjct: 613 GEAAQRIHAERAELPVLFVTGYADLGI-----LPQGVAVLHKPYTRDALLGDVKAML 664 >gi|134299848|ref|YP_001113344.1| two component sigma-54 specific Fis family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052548|gb|ABO50519.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum reducens MI-1] Length = 454 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 65/119 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ M L K L + GY+V + G D +R+E SL++ D+ MPEMDG+E Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +A +L P L ++ IT + ++ ++KPF L +L + + L + + Sbjct: 66 VLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNH 124 >gi|259419177|ref|ZP_05743094.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259345399|gb|EEW57253.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 769 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ + A D + + S+ +TD++MP MDG Sbjct: 653 VLLVEDEAPVRAFASRALRMRGYTVLEAESAEEALDTLEDPNLSVDVFVTDVIMPGMDGP 712 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+A E P KV+F++G++ A N+ L+KPF L L V L Sbjct: 713 TWVRKALEERPGTKVVFVSGYSEGAFGDAEPDVPNSVFLAKPFSLSQLTETVQSQL 768 >gi|302039508|ref|YP_003799830.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300607572|emb|CBK43905.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 1314 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMD 60 + ILL ED +R L +AL GY ++ ++G A V P +LLTD+VMP+M Sbjct: 1193 ETILLVEDQHAVRLLLTQALSDYGYTLLEASSGQEALRLVAAARTPIHILLTDVVMPQMT 1252 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA P L+V+F++G+A ++ P A + KPF +L ++ LL Sbjct: 1253 GPALAEHLRRQWPGLRVLFMSGYAEGSVLPTFLAEPGTGFIQKPFLPTELAQKLRELL 1310 >gi|163850235|ref|YP_001638278.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661840|gb|ABY29207.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 1065 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ ED+ +R +++ L GY + +G S ++ E LL+TD+ +P ++G Sbjct: 947 ETVLVVEDEPVVRDLIVEVLHDLGYRALEAQDGPSGLAVLQSHERIDLLVTDVGLPGLNG 1006 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +A E P+LKV+FITG+A A+ + + ++++KPF + L + ++ Sbjct: 1007 RQLADQAREGRPELKVLFITGYAENAMFGNGHLEPGMQMMTKPFPVEALATRIREII 1063 >gi|404256|emb|CAA47916.1| ntrC [Azospirillum brasilense] Length = 481 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 68/116 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+A+DD +R L +AL + G+EV + N ++ + V + L++TD+VMP+ +G+ Sbjct: 4 RTILVADDDRAIRTVLTQALARLGHEVRTTGNASTLWRWVADGQGDLIITDVVMPDENGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R ++ PDL+++ ++ + + + L KPF L++LV+ V R L Sbjct: 64 DLIPRIKKIRPDLRIIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELVSVVERAL 119 >gi|254559476|ref|YP_003066571.1| sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains [Methylobacterium extorquens DM4] gi|254266754|emb|CAX22552.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains [Methylobacterium extorquens DM4] Length = 1065 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ ED+ +R +++ L GY + +G S ++ E LL+TD+ +P ++G Sbjct: 947 ETVLVVEDEPVVRDLIVEVLHDLGYRALEAQDGPSGLAVLQSHERIDLLVTDVGLPGLNG 1006 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +A E P+LKV+FITG+A A+ + + ++++KPF + L + ++ Sbjct: 1007 RQLADQAREGRPELKVLFITGYAENAMFGNGHLEPGMQMMTKPFPVEALATRIREII 1063 >gi|85717408|ref|ZP_01048358.1| two-component sensor histidine kinase [Nitrobacter sp. Nb-311A] gi|85695763|gb|EAQ33671.1| two-component sensor histidine kinase [Nitrobacter sp. Nb-311A] Length = 838 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++ IL+ ED+ +R+ + AL + GY+V+ + G +A + P +LL TDIVMP+M+ Sbjct: 719 HEVILVVEDEAAVRQLSVDALMEMGYDVLEADGGVAALRVLDAHPEIALLFTDIVMPDMN 778 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA + P +KV++ TG+ A+ + +++ KPF L L +V +L Sbjct: 779 GRRLADEVRKRRPAIKVLYTTGYTRNAIMHNGVVDPAVELIGKPFTLDQLAAKVREVL 836 >gi|328954078|ref|YP_004371412.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] gi|328454402|gb|AEB10231.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] Length = 117 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+A+D+ +R + L + GYEV++ NG A + V +EP +L++ DI MPEM GI Sbjct: 2 KRILVADDEMSIRLLYSEELREEGYEVLTAANGREALEIVEKEPLNLIILDIKMPEMSGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ E P+L V+ + ++ D + + L K L DL V + L Sbjct: 62 EVLRQIKEKHPNLPVLLSSAYSEY--KQDFGTWASEEYLVKSSDLEDLKTAVRKHL 115 >gi|289673819|ref|ZP_06494709.1| response regulator receiver [Pseudomonas syringae pv. syringae FF5] gi|302187741|ref|ZP_07264414.1| response regulator receiver [Pseudomonas syringae pv. syringae 642] gi|330900710|gb|EGH32129.1| response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] gi|330953359|gb|EGH53619.1| response regulator receiver [Pseudomonas syringae Cit 7] gi|330982193|gb|EGH80296.1| response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 125 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDEPLILMLLADYLSGEGYRVLKAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L ++ +LL Sbjct: 69 QIAEPAIMLRPELKVIFISGYPAEILDSGSPIALKAPILAKPFTMDTLHTQIQKLL 124 >gi|253700700|ref|YP_003021889.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775550|gb|ACT18131.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1260 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 N+ IL+ EDD + R + L + GY+V+ +G A + + R L L D++MP+M Sbjct: 1139 NETILVVEDDAAVGRLVESVLKRYGYDVILAGSGEEALEIYQSRSHDICLALLDVIMPKM 1198 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G EL + E P LKV+F++G+ A + A ++ KP +L +V +L Sbjct: 1199 NGKELCEKLRERSPQLKVLFLSGYTADLIQDKGIAMDGIDLIRKPAKPLELARKVREML 1257 >gi|332187205|ref|ZP_08388945.1| sensory box protein [Sphingomonas sp. S17] gi|332012905|gb|EGI54970.1| sensory box protein [Sphingomonas sp. S17] Length = 1110 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R +++ L +AGY + +G S ++ + LL+TD+ +P M+ Sbjct: 987 RTVLVIDDEATVRMLIVEVLEEAGYTAIEAEDGPSGMKVLQSDIAIDLLITDVGLPGGMN 1046 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A E+ PDLKV+F+TGFA A + + V++KPF + +L N++ +L Sbjct: 1047 GRQVADAAREIRPDLKVLFVTGFAENAAVGNGHLSPGMAVVTKPFVMTELGNKIVEIL 1104 >gi|196232732|ref|ZP_03131583.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196223192|gb|EDY17711.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 700 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMP-EMDG 61 IL+ EDD+ +R + + L +GY V+ +G +A + +E LLLTD+VMP ++G Sbjct: 570 ILIVEDDEAVRSLVREVLDHSGYRVLEAEHGDAALEVWKEHSHEIDLLLTDMVMPGSVNG 629 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL++R PDLKV++ +G++A D L KP+ L N ++R L Sbjct: 630 LELSQRLLAEQPDLKVIYTSGYSAELFGSDVRLEDGRNYLPKPYLSAKLTNILHRAL 686 >gi|86749269|ref|YP_485765.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86572297|gb|ABD06854.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 655 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ EDD +R + + L GY V++ ++GA A + ++ F +L TD+VMP + G Sbjct: 528 VLIVEDDPFVRSYAVMCLRSLGYGVIAASDGAGALQTLDDDTHFDILFTDVVMPGGISGW 587 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA A+ PDL+V+ +G+A + S+ ++ +L+KP+ DL ++ ++ Sbjct: 588 ELAETASRRRPDLRVLLTSGYALETIAGRSHGREHLAILTKPYRKADLARKLREVV 643 >gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 997 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPEM 59 +L+ EDDD +RR AL + GY V+ + SA + +R E P LLLTD+VMP M Sbjct: 881 VLVVEDDDRVRRLARIALQRFGYTVL---DAPSAEEALRVCERPEPPIDLLLTDVVMPGM 937 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA L P +KV++++G+A A+ L KPF L +V +L Sbjct: 938 GGRELAEVVARLRPGIKVLYVSGYADDAVVRHGVLRAEVAFLQKPFTPAALAEKVRSVL 996 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EM 59 ++ +L+ EDD + + L +AGY+ V+ + A++ +R + L+L D +P M Sbjct: 5 LSATVLIIEDDPGIAALELDRLEEAGYQCVTAADPGEAFEALRSQGIDLILLDYRLPGGM 64 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 +G++ R D V+ +TGF Sbjct: 65 NGLQFYDRMRAAGYDQPVILVTGFG 89 >gi|40787322|gb|AAR90235.1| NtrC mutant form [Azospirillum brasilense] Length = 481 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G+EV + N ++ + V + L++TD+VMP+ +G++L Sbjct: 6 ILVADDDRAIRTVLTQALARLGHEVRTTGNASTLWRWVADGQGDLIITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ PDL+++ ++ + + + L KPF L++LV+ V R L Sbjct: 66 IPRIKKIRPDLRIIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELVSVVERAL 119 >gi|1245756|gb|AAB35496.1| ntrC [Azospirillum brasilense] Length = 480 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G+EV + N ++ + V + L++TD+VMP+ +G++L Sbjct: 6 ILVADDDRAIRTVLTQALARLGHEVRTTGNASTLWRWVADGQGDLIITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ PDL+++ ++ + + + L KPF L++LV+ V R L Sbjct: 66 IPRIKKIRPDLRIIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELVSVVERAL 119 >gi|13476679|ref|NP_108248.1| two-component sensor histidine kinase [Mesorhizobium loti MAFF303099] gi|14027440|dbj|BAB53709.1| two-component sensor histidine kinase [Mesorhizobium loti MAFF303099] Length = 1386 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 +++ ED+D +R +AL + GY VV + A + + SLL TD+VMPEM G + Sbjct: 1268 VMVVEDEDRVRAVSAEALRELGYSVVEASGPNEAIKMIEAGQQLSLLFTDVVMPEMSGRQ 1327 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +P LKV++ TG+ A+ + ++L KPF L DL +V +L Sbjct: 1328 LVDILRRGNPKLKVLYTTGYTRNAIVHNGILDPVTQLLPKPFSLEDLAEKVRTIL 1382 >gi|116750533|ref|YP_847220.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] gi|116699597|gb|ABK18785.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 733 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 ++ ILL EDDD +R + + L + GY +++ +G A + E LL+TD+VMP M Sbjct: 613 SETILLVEDDDLVRNMICETLKQNGYTMLNAASGDEALNLCGDHEGVIDLLVTDVVMPGM 672 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA R + P LK +FI+G+ + + L KPF L L ++ +++ Sbjct: 673 NGRELAERLSTAYPRLKTLFISGYTDHGIVHNGILDPETDFLQKPFKLDALARKIRQIM 731 >gi|1171795|sp|P45671|NTRC_AZOBR RecName: Full=Nitrogen assimilation regulatory protein gi|599602|emb|CAA86065.1| Nitrogen assimilation regulatory protein [Azospirillum brasilense] Length = 481 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G+EV + N ++ + V + L++TD+VMP+ +G++L Sbjct: 6 ILVADDDRAIRTVLTQALARLGHEVRTTGNASTLWRWVADGQGDLIITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ PDL+++ ++ + + + L KPF L++LV+ V R L Sbjct: 66 IPRIKKIRPDLRIIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELVSVVERAL 119 >gi|40787320|gb|AAR90234.1| NtrC mutant form [Azospirillum brasilense] Length = 481 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G+EV + N ++ + V + L++TD+VMP+ +G++L Sbjct: 6 ILVADDDRAIRTVLTQALARLGHEVRTTGNASTLWRWVADGQGDLIITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ PDL+++ ++ + + + L KPF L++LV+ V R L Sbjct: 66 IPRIKKIRPDLRIIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELVSVVERAL 119 >gi|330502761|ref|YP_004379630.1| two component, sigma54 specific, fis family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917047|gb|AEB57878.1| two component, sigma54 specific, fis family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 471 Score = 66.6 bits (161), Expect = 9e-10, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L G++ + + +A + EEPF L+++D+ MP MD Sbjct: 1 MAAKVLLVEDDRALREALADTLCLGGHDYRAVDCAEAALVALTEEPFGLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L + + P L V+ +T F AV D+ A L KPF R L+ V R Sbjct: 61 GHQLLAQIRDRYPQLPVLLMTAFGAVERAVDAIRQGAADYLVKPFEPRTLLELVAR 116 >gi|295688128|ref|YP_003591821.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430031|gb|ADG09203.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 673 Score = 66.6 bits (161), Expect = 9e-10, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-M 59 ++ +L+ +D+ +R + ALG+ GY + +GA+ ++ LL+TD+ +P + Sbjct: 552 DRTVLVVDDEPTVRMLVTDALGELGYACIEAQDGAAGLRILQGGRRVDLLITDVGLPGGL 611 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A L P LKV+FITG+A A+ + +VL+KPF + DL ++R+L Sbjct: 612 NGRQVADAARALRPGLKVLFITGYAENAVLNHGHIEHGMEVLTKPFAIADLTGRIDRML 670 >gi|189467281|ref|ZP_03016066.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM 17393] gi|189435545|gb|EDV04530.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM 17393] Length = 1330 Score = 66.6 bits (161), Expect = 9e-10, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +LI K GY V SC NG A VRE L+++DI+MPEM G Sbjct: 1078 QRILIVEDNDDLRNYLIDMF-KTGYNVQSCPNGKEALVIVREFDPDLVISDIMMPEMGGD 1136 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + DL++ I AL + N + ++ ++KPF + L V + Sbjct: 1137 EL---CSVIKGDLEISHIPVILLTALGDEKNMLEGLEIGADAYITKPFSVGILKATVKNI 1193 Query: 118 L 118 L Sbjct: 1194 L 1194 >gi|296532051|ref|ZP_06894828.1| sensory transduction protein kinase [Roseomonas cervicalis ATCC 49957] gi|296267613|gb|EFH13461.1| sensory transduction protein kinase [Roseomonas cervicalis ATCC 49957] Length = 630 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 + +L+ +DD +R L G+ VV G +A + E LL++D+ MP M Sbjct: 516 SATVLVVDDDPAVRGVTATFLADLGHRVVEVAEGEAALRVLAERADIGLLVSDVAMPRMH 575 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA RA L P L V+ +TG+A +P AP+ VL KPF L DL V +LL Sbjct: 576 GTELAERARALRPALPVLLLTGYA----DPQ-MAPQRYPVLRKPFRLGDLSRCVAQLL 628 >gi|307943500|ref|ZP_07658844.1| response regulator MprA [Roseibium sp. TrichSKD4] gi|307773130|gb|EFO32347.1| response regulator MprA [Roseibium sp. TrichSKD4] Length = 131 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +ILL EDD+ +R F+ +AL G++V + +G A + + F LLL+DI MP MDG Sbjct: 3 RILLTEDDEAVRSFVKRALELDGHQVEAVEDGGEAVEALTRNKGNFDLLLSDIKMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I LA + PDL ++ +TGFA + +++KPF L D+ V Sbjct: 63 IALALHSARDFPDLPILLMTGFADQRERANGLDSLVQDIITKPFSLADIRKAV 115 >gi|85715728|ref|ZP_01046707.1| PAS sensor Signal Tranduction Histidine Kinase [Nitrobacter sp. Nb-311A] gi|85697381|gb|EAQ35260.1| PAS sensor Signal Tranduction Histidine Kinase [Nitrobacter sp. Nb-311A] Length = 182 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE- 58 + + L+ EDD+D+R + ++ L + GY V+ ++G SA + + +L TD+V+P Sbjct: 61 LEETFLVLEDDEDVRSYSVEILRELGYRVLEAHDGLSALRVLDQHARVDILFTDVVLPGG 120 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M ++A A L P LKV+F TG+A A+ K ++++KPF DL ++ +L Sbjct: 121 MTEAQVAAHARALRPKLKVLFTTGYARNAIIHHGRLDKGVQLITKPFSFNDLAAKIRDVL 180 >gi|307718837|ref|YP_003874369.1| hypothetical protein STHERM_c11530 [Spirochaeta thermophila DSM 6192] gi|306532562|gb|ADN02096.1| hypothetical protein STHERM_c11530 [Spirochaeta thermophila DSM 6192] Length = 632 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 ++ IL+ EDDD +R F+ ++L + GY ++ N A E P L++TD+++P + Sbjct: 512 SETILVVEDDDHVRDFIHRSLQRRGYRMLVVGNPGEALLLSEEYKGPIHLVITDLILPYI 571 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG L R + P+ KV+FI+G+ + + +L KPF L L+ +V +L Sbjct: 572 DGKRLVERLRKARPETKVLFISGYPPSMIGERFSLSPEEPLLQKPFDLDTLLRKVREVL 630 >gi|197117193|ref|YP_002137620.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086553|gb|ACH37824.1| sensor histidine kinase response regulator, PAS, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 953 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ IL+AED+ +R + L + GY + +G A +K R E L+ TD++MP Sbjct: 833 SETILIAEDEAHVRELVDSVLQQFGYRTMLAVDGRDAVEKFRRHRESIDLVFTDLIMPGK 892 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL + PD+KV+F +G+ A + N ++ +L KP +L +V +L Sbjct: 893 SGMELHTEIKAMRPDVKVLFTSGYMADVMEKHGNVDEHYDILMKPIAPAELARKVREML 951 >gi|296535538|ref|ZP_06897720.1| nitrogen regulation protein NR(I) [Roseomonas cervicalis ATCC 49957] gi|296264124|gb|EFH10567.1| nitrogen regulation protein NR(I) [Roseomonas cervicalis ATCC 49957] Length = 479 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 66/113 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+A+DD +R L +ALG+AGY V + ++ A+ + V E L++TD+VMP+ +G Sbjct: 4 TRTILVADDDRAIRTVLSQALGRAGYTVRATSSAATLWRWVEEGAGDLVITDVVMPDENG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++L R + P+L+V+ ++ + + + L KPF L++L+ V Sbjct: 64 LDLVPRIKRVRPELRVVVMSAQSTFMTAVKAAQRGAFEYLPKPFDLKELLAVV 116 >gi|26990258|ref|NP_745683.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985206|gb|AAN69147.1|AE016548_6 sensory box histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 688 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE-M 59 ++ILL ED +R + + L + GY V + NG SA ++ E P LLL+D+ +P + Sbjct: 569 KRILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQSGERP-DLLLSDVGLPGGL 627 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A R E PDLKV+ ITG+ A D + VL+KPF L L V LL Sbjct: 628 NGRQVAERFRERYPDLKVLLITGYDESAAFSDGQPLQGTLVLTKPFELEALAERVRELL 686 >gi|325281460|ref|YP_004254002.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] gi|324313269|gb|ADY33822.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] Length = 229 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD ++ L + L G+E V C +G AY+ +PF + + D++MP+ DG Sbjct: 6 KILLAEDDTNLGMLLKEYLRAKGFETVLCEDGEVAYEAFLNQPFDICILDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ +++ ++ ++F+T A N + + K+ +SKPF + +L+ + +L Sbjct: 66 LAKEIRQINSEIPIIFLT-----AKNMKEDVLEGFKLGADDYMSKPFSMEELLLRIEAVL 120 >gi|222530125|ref|YP_002574007.1| response regulator receiver protein [Caldicellulosiruptor bescii DSM 6725] gi|302872557|ref|YP_003841193.1| response regulator receiver protein [Caldicellulosiruptor obsidiansis OB47] gi|312126833|ref|YP_003991707.1| response regulator receiver protein [Caldicellulosiruptor hydrothermalis 108] gi|312621582|ref|YP_004023195.1| response regulator receiver protein [Caldicellulosiruptor kronotskyensis 2002] gi|312792661|ref|YP_004025584.1| response regulator receiver protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876511|ref|ZP_07736494.1| response regulator receiver protein [Caldicellulosiruptor lactoaceticus 6A] gi|222456972|gb|ACM61234.1| response regulator receiver protein [Caldicellulosiruptor bescii DSM 6725] gi|302575416|gb|ADL43207.1| response regulator receiver protein [Caldicellulosiruptor obsidiansis OB47] gi|311776852|gb|ADQ06338.1| response regulator receiver protein [Caldicellulosiruptor hydrothermalis 108] gi|311796722|gb|EFR13068.1| response regulator receiver protein [Caldicellulosiruptor lactoaceticus 6A] gi|312179801|gb|ADQ39971.1| response regulator receiver protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312202049|gb|ADQ45376.1| response regulator receiver protein [Caldicellulosiruptor kronotskyensis 2002] Length = 120 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR L + K GYEV NGA A + +E L++ DI MPEM Sbjct: 1 MAKRILIVDDAAFMRMMLKDIITKNGYEVAGEAENGAKAVEMYKELKPDLVMMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ R ++DP K++ + A+ +S + KPF +V + ++L Sbjct: 61 DGIQAVREIKKIDPQAKIIMCSAMGQQAMVIESIQAGARDFIVKPFQAERIVEAIKKVL 119 >gi|315187209|gb|EFU20966.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 632 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 ++ IL+ EDDD +R F+ ++L + GY ++ N A E P L++TD+++P + Sbjct: 512 SETILVVEDDDHVRDFIHRSLQRRGYRMLVVGNPGEALLLSEEYKGPIHLVITDLILPYI 571 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG L R + P+ KV+FI+G+ + + +L KPF L L+ +V +L Sbjct: 572 DGKRLVERLRKARPETKVLFISGYPPSMIGERFSLSPEEPLLQKPFDLDTLLRKVREVL 630 >gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 230 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ +R F+I L +AG++V NG A EPF ++L D++MPEMDG E Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LD ++ ++ +T + ++KPF +LV + LL Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALL 117 >gi|154253569|ref|YP_001414393.1| nitrogen metabolism transcriptional regulator NtrC [Parvibaculum lavamentivorans DS-1] gi|154157519|gb|ABS64736.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Parvibaculum lavamentivorans DS-1] Length = 480 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLA+DD +R L +ALG+ GYEV S N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILLADDDAAIRTVLNQALGRVGYEVRSTGNAATLWRWVSQGEGDLIITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R PDL ++ ++ + + + L KPF L +L+ V+R +T Sbjct: 66 IPRIKRARPDLPIVVMSAQNTLKTAIMAAERGAYEYLPKPFDLNELIRVVDRAMT 120 >gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1165 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 64/126 (50%), Gaps = 11/126 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 +ILLAED D +R + L K G EV +NG A K E EP+ LLLTD+ MPE Sbjct: 1032 RILLAEDGPDNQRLICFLLKKMGAEVDVADNGVIACQKFLEAETAGEPYDLLLTDMQMPE 1091 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVN 115 MDG LAR E L ++ +T A A++ D NA LSKP + R L + Sbjct: 1092 MDGYTLARNFRESGATLPIIALT---AHAMSDDRQKCLNAGCDDYLSKPINSRILGQTIL 1148 Query: 116 RLLTIK 121 L +K Sbjct: 1149 HWLIVK 1154 >gi|329114795|ref|ZP_08243552.1| Blue-light-activated protein [Acetobacter pomorum DM001] gi|326695926|gb|EGE47610.1| Blue-light-activated protein [Acetobacter pomorum DM001] Length = 750 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 12/118 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMP-EMD 60 ++L+ EDD +R ++ L AG+ V+ +G A+D E P LL+TDI +P +D Sbjct: 627 QVLVVEDDAAIRDIVVTILSMAGHRVLEAGDGEQAFDVAAAAEGPLDLLVTDIQLPGPLD 686 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK----NAKVLSKPFHLRDLVNEV 114 G+ L+R E P+L V++++G L DS P+ NA++L+KPF RD + EV Sbjct: 687 GLTLSRVLVERYPELAVVYMSG----DLTADSKLPEGGVANARLLAKPFR-RDGLMEV 739 >gi|289646785|ref|ZP_06478128.1| response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 125 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDEPLILMLLADYLSGEGYRVLKAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L + + LL Sbjct: 69 QIAEPAVMLRPELKVIFISGYPAEILDSGSPIAMKAPILAKPFTMETLHSRIQELLA 125 >gi|288958348|ref|YP_003448689.1| two-component response regulator, nitrogen regulation response [Azospirillum sp. B510] gi|288910656|dbj|BAI72145.1| two-component response regulator, nitrogen regulation response [Azospirillum sp. B510] Length = 481 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 67/114 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G+EV + N A+ + V + L++TD+VMP+ +G++L Sbjct: 6 ILVADDDRAIRTVLTQALARLGHEVRTTGNAATLWRWVADGQGDLVITDVVMPDENGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L P+++V+ ++ + + + L KPF L++LV+ V R L Sbjct: 66 IPRIKKLRPEMRVIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELVSVVERAL 119 >gi|256650592|dbj|BAI16526.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01-42C] Length = 747 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 12/118 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMP-EMD 60 ++L+ EDD +R ++ L AG+ V+ +G A+D E P LL+TDI +P +D Sbjct: 624 QVLVVEDDAAIRDIVVTILSMAGHRVLEAGDGEQAFDVAAAAEGPLDLLVTDIQLPGPLD 683 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK----NAKVLSKPFHLRDLVNEV 114 G+ L+R E P+L V++++G L DS P+ NA++L+KPF RD + EV Sbjct: 684 GLTLSRVLVERYPELAVVYMSG----DLTADSKLPEGGVANARLLAKPFR-RDGLMEV 736 >gi|258541185|ref|YP_003186618.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632263|dbj|BAH98238.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256635320|dbj|BAI01289.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-03] gi|256638375|dbj|BAI04337.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-07] gi|256641429|dbj|BAI07384.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-22] gi|256644484|dbj|BAI10432.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-26] gi|256647539|dbj|BAI13480.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-32] gi|256653583|dbj|BAI19510.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-12] Length = 747 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 12/118 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMP-EMD 60 ++L+ EDD +R ++ L AG+ V+ +G A+D E P LL+TDI +P +D Sbjct: 624 QVLVVEDDAAIRDIVVTILSMAGHRVLEAGDGEQAFDVAAAAEGPLDLLVTDIQLPGPLD 683 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK----NAKVLSKPFHLRDLVNEV 114 G+ L+R E P+L V++++G L DS P+ NA++L+KPF RD + EV Sbjct: 684 GLTLSRVLVERYPELAVVYMSG----DLTADSKLPEGGVANARLLAKPFR-RDGLMEV 736 >gi|70730611|ref|YP_260352.1| response regulator [Pseudomonas fluorescens Pf-5] gi|68344910|gb|AAY92516.1| response regulator [Pseudomonas fluorescens Pf-5] Length = 125 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P +++TD +P + G+ Sbjct: 9 VLIVEDEPVILMLLADYLSGLGYRVLQAENGEQAFEILASKPHLDVMITDYRLPGGITGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +A A +L PDLKV+FI+G+ L S + A +L+KPF L L ++ +LL Sbjct: 69 MIAEPAVKLRPDLKVIFISGYPNEILECGSPITRKAPILAKPFDLNSLQEQIQQLLA 125 >gi|302338341|ref|YP_003803547.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635526|gb|ADK80953.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 630 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY--DKVREEPFSLLLTDIVMPEM 59 N+ IL+ ED++ + + + L KAGY V++ NG A + + LL+TD++MP + Sbjct: 509 NETILVVEDEEGVLELVERILAKAGYHVLTARNGGEALLIQERHDAALDLLITDLIMPHL 568 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA R + D LKV+F++G+ + L KPF +L+ +V L+ Sbjct: 569 NGGELAARMRQTDGGLKVLFMSGYPERTIWERKIDISREVFLRKPFEPVELLKKVRLLI 627 >gi|170692777|ref|ZP_02883939.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170142433|gb|EDT10599.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 900 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD D+R ++ L + GY+V++ ++G +A + + + P LL TD+VMP ++ Sbjct: 585 ETVLVVEDDADVRLTAVEMLVQLGYKVLTASSGDAALEFIDSDVPIDLLFTDVVMPGKIK 644 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ELARRA P + +F +G+ + +LSKP+ DL +V +L Sbjct: 645 SVELARRAAARSPSVPTLFTSGYTRDEIVHHGKLDAGITLLSKPYRRDDLARKVRGVL 702 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 2/110 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD D R L LG G + S + A + + + +L TDI +P M G L Sbjct: 782 VLLVEDDADSREALSCLLGALGLDCTSVGSAEEALPLLPAQRYDILFTDITLPGMSGDNL 841 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 AR PD++V+ ++G+ A A P A++L KPF L L E+ Sbjct: 842 ARAVLREQPDVQVLLVSGYGAQA--PIGERIPGARLLGKPFDLAQLRREL 889 >gi|188579776|ref|YP_001923221.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179343274|gb|ACB78686.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1215 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 N+ +L+ ED+ +R +++ L GY + NG + + VR L++TD+ +P ++ Sbjct: 1095 NETVLVVEDEPVVRDLVVEVLRDLGYRPIEAPNGPAGLEIVRSRARIDLMVTDVGLPGLN 1154 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA +A L P LKV+F+TG+A AL + ++++KPF + L + ++ Sbjct: 1155 GRQLADQARALRPKLKVLFMTGYAENALFGGGRLDPDMQMITKPFPVELLAARIREMI 1212 >gi|325924827|ref|ZP_08186262.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas perforans 91-118] gi|325544757|gb|EGD16105.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas perforans 91-118] Length = 114 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 5/108 (4%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDGIEL 64 + ED +++R + +AL AG V + ++G SA VR+ P+ ++ +DI MP M GIEL Sbjct: 1 MVEDQEELRELIGEALRDAGISVDTADDGHSALRMVRDSGPYDVVFSDIRMPNGMSGIEL 60 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 + + +L P +V+ +GFA L P P L KP+ LR L++ Sbjct: 61 SEQVAQLLPQARVILASGFAKAQLPP---LPAQVDFLPKPYRLRQLID 105 >gi|239905929|ref|YP_002952668.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795793|dbj|BAH74782.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 642 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMP 57 M++++LL +D++D+RRFL L GYEV + NG A +D V EP S++LTDI MP Sbjct: 1 MSERLLLVDDEEDIRRFLGMFLADLGYEVHAAENGVQALEMFDSV--EP-SIVLTDIKMP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 MDG+EL ++ P+ +V+ I+G + L A ++KP Sbjct: 58 VMDGLELLKQIKAKSPETEVVMISGHGDMDLAIGCLQYDAADFVTKPI 105 >gi|325292721|ref|YP_004278585.1| sensory box histidine kinase/response regulator [Agrobacterium sp. H13-3] gi|325060574|gb|ADY64265.1| sensory box histidine kinase/response regulator [Agrobacterium sp. H13-3] Length = 862 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + + E ++++D+VMPEMDG Sbjct: 743 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALEVMEELEGKVDIVVSDVVMPEMDGP 802 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 803 SLLRELRKSYPDLKFIFVSGYAEDAFA--KNLPADAKFGFLPKPFSLKQLAIAVREML 858 >gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ EDD +RR L L GY VVS +G A ++ + E L++ DI++P+MDG E Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 +A+ +L PD+ ++ +T A+ + D A A L+KPF +L+ + LL Sbjct: 66 VAQNLRKLKPDVLILMLT---ALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRR 122 Query: 121 KN 122 KN Sbjct: 123 KN 124 >gi|328541751|ref|YP_004301860.1| Response regulator receiver (CheY-like protein) [polymorphum gilvum SL003B-26A1] gi|326411503|gb|ADZ68566.1| Response regulator receiver (CheY-like protein) [Polymorphum gilvum SL003B-26A1] Length = 131 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 2/114 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-VREE-PFSLLLTDIVMPEMDG 61 +ILL EDDD +R F+ +AL G+ V + +G +A + VRE+ F LL++DI MP MDG Sbjct: 3 RILLTEDDDAVRSFVKRALELDGHSVRAVEDGGAALEALVREKGQFDLLVSDIKMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 I LA + P + ++ +TGFA + V++KPF L D+ V Sbjct: 63 IALALQVARDWPAMPILLMTGFADQRERANGLDALVHDVITKPFSLADIRQAVR 116 >gi|326317127|ref|YP_004234799.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373963|gb|ADX46232.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 889 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ +D+ +R +++ L + GY+ + ++GASA ++ LL+TD+ +P M+G Sbjct: 770 VLVVDDEPSVRALVVEVLHEMGYQTIEAHDGASALQVLQSRTHLDLLITDVGLPGGMNGR 829 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA PDL+++FITG+A A + + + VL+KPF L L + V L+ Sbjct: 830 QLADGGRLTRPDLQILFITGYAENAAVGNGHLERGMHVLTKPFTLDALAHRVRTLI 885 >gi|302341761|ref|YP_003806290.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638374|gb|ADK83696.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfarculus baarsii DSM 2075] Length = 448 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 3/112 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ + L + L K G+ V +C N A A + + E P +L++D+ MP MDG+EL Sbjct: 9 ILLVDDEATALKALRRILEKQGHRVHTCQNPARALEALAELPIDVLVSDLKMPLMDGMEL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNE 113 RA L P ++V+ ++GFA++ ++ L+KP +RD V E Sbjct: 69 LDRAKGLAPQVEVIIVSGFASLDGAVEAAQKGACHFLAKPVTPQQMRDKVQE 120 >gi|323490894|ref|ZP_08096089.1| sporulation initiation phosphotransferase F [Planococcus donghaensis MPA1U2] gi|323395374|gb|EGA88225.1| sporulation initiation phosphotransferase F [Planococcus donghaensis MPA1U2] Length = 118 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 65/116 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D +R L + K GY+ ++ +G A +KV+E P L+L D+ +P MDGI Sbjct: 2 KTVLIVDDQPGIRLLLKEVFTKEGYQAITAGSGLEAIEKVQEIPPDLVLLDMKIPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ +R + +P + V+ +T + + L +S +KPF + ++ + V +LL Sbjct: 62 EILKRLKKSNPSIHVLMMTAYGELDLIRESINWGAEHYFTKPFDVFEVRDAVKQLL 117 >gi|218782277|ref|YP_002433595.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763661|gb|ACL06127.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1072 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 + ILL ED++ + + + L + GY+V++ +N + E LLLTD++MP M Sbjct: 951 GETILLVEDEESIMKMGERMLSRLGYKVMAASNPEDGLRLAEQHESAIDLLLTDVIMPGM 1010 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA ++ PD KV+F++G+ A + + + KPF R+L V+ L Sbjct: 1011 NGKDLAEAVHKIRPDCKVLFMSGYTASVIEQHGVLDETTHFVQKPFAYRNLAKGVHDAL 1069 >gi|110834104|ref|YP_692963.1| sensor histidine kinase [Alcanivorax borkumensis SK2] gi|110647215|emb|CAL16691.1| sensor histidine kinase [Alcanivorax borkumensis SK2] Length = 714 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L ED++ + L K GY+V + +NG +A + +EPF L+L D +MPEMDG E Sbjct: 584 RLMLVEDNEVNQLVTRGMLSKLGYQVKTVSNGETALALLEQEPFDLVLMDCMMPEMDGFE 643 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E++ P ++ IT A + A L+KP HL L + R L Sbjct: 644 ATRRQREMEHSKASPRTPIVAITANTAEGVQARCLAAGMDDFLAKPVHLDALETVLRRWL 703 >gi|189424441|ref|YP_001951618.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189420700|gb|ACD95098.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 462 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D++ +R L L GY+V+ NGA A D +REE L+L DI MP MD Sbjct: 1 MSKLILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI+ + L PDL V+ ++G + + + KPF L + L+TI Sbjct: 61 GIQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKV------LITI 114 Query: 121 KN 122 N Sbjct: 115 AN 116 >gi|82791994|ref|NP_104603.2| response regulator [Mesorhizobium loti MAFF303099] Length = 123 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R +AL +AG+ + +GA +R + L+++DI MPEMDG Sbjct: 3 KLLIVEDDESVRTLAARALERAGHAIDIAADGAQGLALIRAAHGGYDLVVSDIRMPEMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+A A L P +K+M +TG+A + V+ KPF L ++ + V R L Sbjct: 63 IEMAIAAAALFPAMKIMLMTGYADQRERAEELNGIILDVVQKPFTLAEIRSRVERAL 119 >gi|297537734|ref|YP_003673503.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297257081|gb|ADI28926.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 713 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD++ R L L GYEV S +NG A ++ P L+++DI+MPEMDG Sbjct: 2 KILVAEDDENSRHLLEVVLTSKGYEVASFDNGLKALAYLKTHPVDLIVSDILMPEMDGYG 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNRLL 118 L R + K+ FI A + D + K L KP + DL+ + +++ Sbjct: 62 LCREVKQNQYLQKIPFIFYTATYTSDQDERFAMSLGATKFLVKPMMMEDLLPVIAKVI 119 >gi|182678495|ref|YP_001832641.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Beijerinckia indica subsp. indica ATCC 9039] gi|182634378|gb|ACB95152.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Beijerinckia indica subsp. indica ATCC 9039] Length = 493 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV + A+ + V+ L++TD+VMP+ + EL Sbjct: 6 ILVADDDTAIRTVLSQALSRAGYEVRATGTAATLWRWVQSGDGDLVITDVVMPDENAFEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +L PDL ++ ++ ++ L KPF LR+LV+ V R ++ Sbjct: 66 LPKMKKLRPDLPIIVMSAQNTFMTAIKASERGAYDYLPKPFDLRELVSIVGRAMS 120 >gi|328952858|ref|YP_004370192.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328453182|gb|AEB09011.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 444 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K L+ +DD MR + L + GYEV +NG + + F L+L D+VMP+ +G+E Sbjct: 7 KALIIDDDKAMRDACHQILSRLGYEVEVASNGHLGLALLEKASFDLVLLDLVMPDQNGVE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ LDP ++V+ ITG+ +A ++ L KPF DL V R L Sbjct: 67 VLKQIKVLDPQVQVVIITGYGTIASAVETIKLGAFDFLPKPFTPDDLRQVVKRAL 121 >gi|327478820|gb|AEA82130.1| two-component hybrid sensor and regulator protein [Pseudomonas stutzeri DSM 4166] Length = 928 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD ++ +I+ L GY V+ N+ SA ++ LL TD+VMP + Sbjct: 690 SETILVVEDDLPVQATVIELLTGLGYSVLRANDAQSALSILQSGIGIDLLFTDVVMPGPL 749 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+A L PD+ V+F +G+ A+ + ++LSKP+ DL +V +LL Sbjct: 750 SSTELARQARLLQPDVAVLFTSGYTRNAVVHGGRLDPDVELLSKPYRQEDLARKVRQLL 808 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +++ ED + + + + GY V + +A + E+ F LL D+ +P G Sbjct: 821 QWVMVVEDQPQLLTLTCEMVEELGYGVRGYPDAETAAKALHEQRFDQLLLDVNLPGRSGP 880 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E A A + P L+++F++G + DS P A+ L KPF D + EV R Sbjct: 881 EFAAEALKTQPWLRLVFVSGEGRI----DSRLP--ARSLPKPFSF-DQLAEVLR 927 >gi|293607307|ref|ZP_06689648.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] gi|292814399|gb|EFF73539.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] Length = 533 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 7/116 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGI 62 +L+AEDD +R +++ L + GY V+ ++G+SA + LL+ D+ +P MDG Sbjct: 421 VLIAEDDVSVRAVVVETLSELGYAVIQTSDGSSALRALSAPGQIDLLICDLGLPGRMDGR 480 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ L P LKV+FITG + L + AP LSKPF L DL +V+ L+ Sbjct: 481 QVVEAGRMLRPGLKVLFITGSGSQTLT-EVGAP----TLSKPFALDDLARQVHALM 531 >gi|319408627|emb|CBI82282.1| sensor histidine kinase [Bartonella schoenbuchensis R1] Length = 842 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED+D +R +KAL GY V+ +G A + E ++++D+VMPEMDG Sbjct: 725 VLLVEDEDAVRMGEVKALQMRGYTVLEAASGVEALAVLEENKGAVDIIVSDVVMPEMDGP 784 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + P++K +F++G+ A + + LSKPF L+ L V L Sbjct: 785 TLLKEVRKKYPEIKFIFVSGYTKDAFTKNLSKDAVFGFLSKPFTLKQLALAVKETL 840 >gi|121602917|ref|YP_989140.1| sensor histidine kinase/reponse regulator [Bartonella bacilliformis KC583] gi|120615094|gb|ABM45695.1| sensor histidine kinase/reponse regulator [Bartonella bacilliformis KC583] Length = 845 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V+ +G A ++E ++++D+VMP MDG Sbjct: 728 VLLVEDEDAVRMGGVRALQMRGYTVLEAASGVEALAVLKENKGAIDIIVSDVVMPGMDGP 787 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 L + + PD+K +F++G+ A N P+ A LSKPF L+ L+ V L Sbjct: 788 TLLKEVRKSYPDIKFIFVSGYTKDAFT--KNLPEGAIFGFLSKPFTLKQLILAVKERL 843 >gi|270339712|ref|ZP_06005766.2| two component system sensor histidine kinase [Prevotella bergensis DSM 17361] gi|270334042|gb|EFA44828.1| two component system sensor histidine kinase [Prevotella bergensis DSM 17361] Length = 1372 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+RR+L+ AL Y VV +NG A +K+ E SL+LTD++MPEMDG EL Sbjct: 1125 LLIVEDNTDIRRYLVDALCDQ-YHVVEASNGKEAMEKLDAETISLVLTDVMMPEMDGFEL 1183 Query: 65 ARR 67 +R Sbjct: 1184 CKR 1186 >gi|218780160|ref|YP_002431478.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218761544|gb|ACL04010.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 144 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N +IL +D++++ + L GYEV S +GA AY+ + P + L++ D VMP M Sbjct: 13 NNRILFVDDEENVTSIMNMMLEGLGYEVTSHADGAKAYEDFTQRPDGYGLVICDQVMPGM 72 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L + + P+ V+ TG+A L + VL+KPF ++ L ++ +L Sbjct: 73 SGMDLLEKVRGVSPETPVILCTGYANDELQEQVEKRSVSAVLTKPFAMQKLARVISAVL 131 >gi|257459790|ref|ZP_05624897.1| two component transcriptional regulator, winged helix family [Campylobacter gracilis RM3268] gi|257442806|gb|EEV17942.1| two component transcriptional regulator, winged helix family [Campylobacter gracilis RM3268] Length = 217 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD + R + + L + GYEV C +G +A DK+ + LL+ DI +PE+ G E Sbjct: 2 KILLLEDDFEYRSSVSEYLTELGYEVDECESGDAACDKIAANAYHLLILDIKVPEVSGEE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R A L + VM +T + + L KPFHL +L V+ L+ Sbjct: 62 VLRYARSLGLNTPVMMMTSLGDIDDLSQCYELGCNEYLKKPFHLAELKFRVSELM 116 >gi|240138255|ref|YP_002962727.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal (fragment) [Methylobacterium extorquens AM1] gi|240008224|gb|ACS39450.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal (fragment) [Methylobacterium extorquens AM1] Length = 434 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDGI 62 +L+ ED+ + +++LG+ GY ++ A A +++R E +L +D+VMP M+G+ Sbjct: 319 VLVVEDEPAVLEMAVESLGELGYRTLTATQAAQALERLRGPERIDILFSDVVMPGGMNGV 378 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L+ A L P L+V+ +G+ AL + P + +LSKP+ +L N++ +L Sbjct: 379 QLSVEARRLRPGLRVLLASGYTGTALG-EQGVPADLPLLSKPYRRDELANKLRVIL 433 >gi|116622957|ref|YP_825113.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226119|gb|ABJ84828.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 686 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + ILL ED+ +R+F+ L + GY V + +A+ K+ +P F LLLTD+VMP M Sbjct: 561 EGILLVEDESAVRKFVRALLERQGYTVFEAADSDAAF-KIANDPAATFDLLLTDVVMPRM 619 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G ++A + + P L+V++++G+ ++ ++ + KPF L ++ LLT Sbjct: 620 NGPQIAAQIEAVRPGLRVLYMSGYTDRTIHLHDQIGIHSNFIQKPFTPAGLAQKLRELLT 679 >gi|330501095|ref|YP_004377964.1| response regulator receiver protein [Pseudomonas mendocina NK-01] gi|328915381|gb|AEB56212.1| response regulator receiver protein [Pseudomonas mendocina NK-01] Length = 130 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + ILL EDDD +R + LG+ GY V + +G SA D +R + LL++DI +P MDG Sbjct: 10 KTILLVEDDDVVRELTAEVLGEFGYRVHALRDGPSALDLLRSGQRVDLLMSDIGLPGMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVAL-----NPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 EL A +L P L V+F +G+ L DS A ++ V KP+ R L + Sbjct: 70 RELVETARQLQPTLPVLFASGYDERELLEAVRARDSAAATDSIV--KPYDFRLLAQRLGE 127 Query: 117 L 117 L Sbjct: 128 L 128 >gi|331088816|ref|ZP_08337726.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium 3_1_46FAA] gi|330407339|gb|EGG86842.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium 3_1_46FAA] Length = 226 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 64/114 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L ++GYEV CN+G A D + E + L++ D+ +P +DG+E Sbjct: 2 RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + D + KV+ ++ + +A + + KPFHL++L V L Sbjct: 62 ILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSL 115 >gi|154502659|ref|ZP_02039719.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149] gi|153796542|gb|EDN78962.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 64/114 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L ++GYEV CN+G A D + E + L++ D+ +P +DG+E Sbjct: 22 RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGME 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + D + KV+ ++ + +A + + KPFHL++L V L Sbjct: 82 ILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSL 135 >gi|312196522|ref|YP_004016583.1| multi-sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311227858|gb|ADP80713.1| multi-sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 659 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPEMDGIE 63 ILL EDD ++RR + L AGY+V++ +G SA D LL+TD++MP M+G + Sbjct: 523 ILLVEDDAEIRRLSERILLAAGYDVLTAADGRSALDVAASARALDLLVTDVIMPRMNGRQ 582 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA PDL V++++ + ++ + A + L KP+ L +V+ LL Sbjct: 583 LADWLRASRPDLPVLYVSAYPRGLVSSNRPAGPDGAYLEKPYTPSLLTAKVSLLL 637 >gi|224370972|ref|YP_002605136.1| two domain fusion protein (N:Methyl-accepting chemotaxis protein-C:sensory box histidine kinase/response regulator) [Desulfobacterium autotrophicum HRM2] gi|223693689|gb|ACN16972.1| two domain fusion protein (N:Methyl-accepting chemotaxis protein-C:sensory box histidine kinase/response regulator) [Desulfobacterium autotrophicum HRM2] Length = 1034 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 ILL ED+ + + + + L K GY +++ ++ A + + + F +LL+TD+VMPEM+G Sbjct: 915 ILLVEDESSILKLVKRILEKLGYILLATSSPLEALNLAKNQSFKINLLITDVVMPEMNGR 974 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L+ + + PDLK +F++G+ A + + +SKPF ++++ +V +L Sbjct: 975 VLSEQIKSIYPDLKTLFMSGYTADVIAHQGILEDDVFFISKPFSIKEIAAKVREVL 1030 >gi|71735484|ref|YP_274799.1| response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|298487170|ref|ZP_07005219.1| Response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71556037|gb|AAZ35248.1| response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|298158194|gb|EFH99265.1| Response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 142 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 26 VLIVEDEPLILMLLADYLSGEGYRVLKAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 85 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L + + LL Sbjct: 86 QIAEPAVMLRPELKVIFISGYPAEILDSGSPIALKAPILAKPFTMETLHSRIQELLA 142 >gi|312135840|ref|YP_004003178.1| response regulator receiver protein [Caldicellulosiruptor owensensis OL] gi|311775891|gb|ADQ05378.1| response regulator receiver protein [Caldicellulosiruptor owensensis OL] Length = 120 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR L + K GYEV NGA A + +E L++ DI MPEM Sbjct: 1 MAKRILIVDDAAFMRMMLKDIITKNGYEVAGEAENGAKAVEMYKELKPDLVMMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ R ++DP K++ + A+ +S + KPF ++ + ++L Sbjct: 61 DGIQAVREIKKIDPQAKIIMCSAMGQQAMVIESIQAGARDFIVKPFQAERIIEAIKKVL 119 >gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 231 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 11/120 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+AEDD D+ L L AG++V+S +NG AYD ++ E L + DI+MPEM+ Sbjct: 1 MSYKILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPEMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G EL +R + + ++F++ A+N DS+ + ++KPF+ ++V V Sbjct: 61 GFELTKRV-RITSSIPIIFLS-----AMNADSDKILGLDIGADDYITKPFNPLEVVARVQ 114 >gi|257487868|ref|ZP_05641909.1| response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628473|ref|ZP_06461427.1| response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|320324587|gb|EFW80664.1| response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328959|gb|EFW84958.1| response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330869967|gb|EGH04676.1| response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878812|gb|EGH12961.1| response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890760|gb|EGH23421.1| response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330985286|gb|EGH83389.1| response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008575|gb|EGH88631.1| response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 125 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P L++TD +P + G+ Sbjct: 9 VLIVEDEPLILMLLADYLSGEGYRVLKAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A L P+LKV+FI+G+ A L+ S A +L+KPF + L + + LL Sbjct: 69 QIAEPAVMLRPELKVIFISGYPAEILDSGSPIALKAPILAKPFTMETLHSRIQELLA 125 >gi|210617395|ref|ZP_03291559.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787] gi|210149325|gb|EEA80334.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787] Length = 246 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 64/114 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L ++GYEV CN+G A D + E + L++ D+ +P +DG+E Sbjct: 22 RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGME 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + D + KV+ ++ + +A + + KPFHL++L V L Sbjct: 82 ILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSL 135 >gi|71280946|ref|YP_268669.1| sensory box sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71146686|gb|AAZ27159.1| sensory box sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 1328 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ IL+ +D+ +R L GY V++ NG A + E L+ +DI+MP+M+G Sbjct: 1040 NETILVVDDEPQLRALAQTILAAKGYRVLTATNGIEALAVLEENSIDLMFSDIIMPKMNG 1099 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A +L P+LK++ +GF + D+N + +++KP+ + L+ + L Sbjct: 1100 YILVEKAQKLYPELKILLASGFQGNQI--DNNIILDEPIIAKPYENKCLLRIIRECL 1154 >gi|218885810|ref|YP_002435131.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756764|gb|ACL07663.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 133 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 66/114 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + + L A KAGYEV + + A+A ++ E F +++TD+ M DG++ Sbjct: 6 RILVLDDEPIVCKRLKPAFQKAGYEVETYTDSAAALRRIEETAFDVVVTDLKMEGADGLQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R ++ P +++ ITGFA + +S ++KPF L D+++ V R+ Sbjct: 66 VVERTHQILPQARIVVITGFATLDTAKESFRKGAFDFVAKPFKLGDILDCVRRI 119 >gi|330998548|ref|ZP_08322368.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329568146|gb|EGG49965.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1327 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 15/124 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++I++AEDDD++R +L++ L K Y VV C+NG A +V P SL+L+D++MPEMDG Sbjct: 1073 KRIVIAEDDDEIRSYLVEELRKH-YYVVPCHNGKEALSEVLRTPPSLVLSDVMMPEMDGY 1131 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS--------KPFHLRDLVNEV 114 L ++ ++ V FI V L S+ + LS KPF+++ L + Sbjct: 1132 TL---CAKIKTNINVNFI---PVVLLTAKSHEKDKIEGLSTGADSYIEKPFNIKVLEYTI 1185 Query: 115 NRLL 118 L+ Sbjct: 1186 RNLI 1189 >gi|153004853|ref|YP_001379178.1| response regulator receiver modulated metal dependent phosphohydrolase [Anaeromyxobacter sp. Fw109-5] gi|152028426|gb|ABS26194.1| response regulator receiver modulated metal dependent phosphohydrolase [Anaeromyxobacter sp. Fw109-5] Length = 357 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + LG+ GY V + ++ +A D R FSL+++D+ MP DG Sbjct: 10 RILIVDDDTSVRDVIAVLLGEEGYAVTAVSSAEAALDAARLTDFSLVISDVRMPGKDGFW 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R EL PD V+ +T F + A L KP + DL+ + R L Sbjct: 70 LLERVRELHPDTAVIMLTAFGDTEAAVECLRNGAADYLLKPPKVTDLIRAIERAL 124 >gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 230 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ +R F++ L +AGYEV+ NG A D ++ F +LL DI+MPE+DG Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +A D + ++ +T + ++KPF +L+ + LL Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLL 117 >gi|319777915|ref|YP_004134345.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171634|gb|ADV15171.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1050 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60 ++ I++ ED+D +R +AL + GY V+ + A V SLL TD+VMPEM Sbjct: 930 DEVIMIVEDEDRVRLMAAEALRELGYSVLEMSGPRDALAAVESGHVPSLLFTDVVMPEMS 989 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + P LKV++ TG+ A+ + ++L+KP+ + +L +V ++L Sbjct: 990 GRELVDKVRTSHPSLKVLYTTGYTRNAIVHNGTLDFGTELLTKPYTIDELAEKVRKVLDR 1049 Query: 121 K 121 K Sbjct: 1050 K 1050 >gi|316931525|ref|YP_004106507.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315599239|gb|ADU41774.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1071 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 + IL+ EDD +R ++ L GY +S N +A + F LL TD+VMP M Sbjct: 924 TETILVVEDDAMVRSYVNAQLKSLGYTTLSVGNATAALSIGESDTVFDLLFTDVVMPGPM 983 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G++LA +L P LKV++ +G++ AL + + +LSKP+ DL + R L Sbjct: 984 NGVQLAAEMAKLRPGLKVLYTSGYSENALIHNDRIDSDVLLLSKPYRRSDLARMIRRAL 1042 >gi|26990674|ref|NP_746099.1| response regulator [Pseudomonas putida KT2440] gi|24985664|gb|AAN69563.1|AE016590_3 response regulator [Pseudomonas putida KT2440] Length = 120 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-E 58 M ++L+ EDD+ +R + +A+ G+ V C + A + + P SL++TDI MP Sbjct: 1 MRHQVLVVEDDEVLRWLMTEAVTHLGHTVTDCASADDALAILEKIPDLSLVITDIQMPGH 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DG+ELA+ P+L V+ ++G V +P S+ P NA+ + KP L L + LL Sbjct: 61 IDGLELAKAIWWEHPELPVIIVSGH--VVFSP-SSLPANARFIKKPCTLDSLSRAMQELL 117 >gi|149187660|ref|ZP_01865957.1| hypothetical protein VSAK1_23109 [Vibrio shilonii AK1] gi|148838540|gb|EDL55480.1| hypothetical protein VSAK1_23109 [Vibrio shilonii AK1] Length = 210 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LLAEDD +++ LI+AL ++VV+ +N A + + F + L D+VMP + Sbjct: 1 MTLRLLLAEDDKELQEALIEALSLESFDVVAFDNAEDAIEAALVQHFDVALLDVVMPGIT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE + P++ ++ T FA V + D+ + L+KPF+L + + R+ Sbjct: 61 GIEALSSLRRIHPNIGIVISTAFATVDVAVDAMKKGADEFLTKPFNLTTVSTTLKRI 117 >gi|239905719|ref|YP_002952458.1| ATP-dependent protease Lon [Desulfovibrio magneticus RS-1] gi|239795583|dbj|BAH74572.1| ATP-dependent protease Lon [Desulfovibrio magneticus RS-1] Length = 669 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 60/114 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+D R L L K GY+V NG A +VR F L++TD+ M +MDG++ Sbjct: 119 HVLVVDDEDIARANLEHVLRKEGYKVRGAANGLEALAEVRRSEFDLIVTDLKMDKMDGLQ 178 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L A L P +VM +TGFA V ++ L+KP +L +L V L Sbjct: 179 LLAEARRLSPATRVMLVTGFATVDTAVEAMRQGAVYYLAKPVNLDELRATVAAL 232 >gi|310639612|ref|YP_003944370.1| sporulation initiation phosphotransferase f [Paenibacillus polymyxa SC2] gi|309244562|gb|ADO54129.1| Sporulation initiation phosphotransferase F [Paenibacillus polymyxa SC2] Length = 122 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 64/117 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +D + +R L++ G GYE NG A + V +EP L+L D+ + MDG Sbjct: 3 KKKVLIVDDQNGIRILLMEVFGSEGYETFQAANGKIALEIVEKEPPDLVLLDMKILGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ + ++PD+KV+ +T + + + ++ +KPF + ++ VN+ L Sbjct: 63 LEILKHLKSMNPDIKVIMMTAYGELDMIKEATELGALMHFTKPFDIDEMRIAVNKQL 119 >gi|303240274|ref|ZP_07326793.1| response regulator receiver protein [Acetivibrio cellulolyticus CD2] gi|302592184|gb|EFL61913.1| response regulator receiver protein [Acetivibrio cellulolyticus CD2] Length = 120 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++KIL+ +D MR + L K GYEV NGA A DK +E L++ DI MPE+ Sbjct: 1 MSKKILIVDDAAFMRMMIKDILTKNGYEVAGEAENGARAIDKFKELTPDLVIMDITMPEV 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI R +++ D K++ + A+ +S + KPF +V V ++L Sbjct: 61 DGIAAVREIKKINSDSKIIMCSAMGQQAMVIESIQAGARDFIVKPFQAERVVEAVKKVL 119 >gi|111221863|ref|YP_712657.1| sensory box histidine kinase/response regulator [Frankia alni ACN14a] gi|111149395|emb|CAJ61086.1| Sensory box histidine kinase/response regulator (partial) [Frankia alni ACN14a] Length = 151 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 Q IL+A+D+D MR + + L + GY V++ + A E LLLTD++MP M Sbjct: 25 GQTILVADDEDAMREIMRRVLTRNGYHVLTAPSAVEACTIAIEHVGEIDLLLTDVIMPRM 84 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA R P ++V++++G+ L + +L KPF L+++V +L Sbjct: 85 QGRELANRIKAGRPAIRVLYMSGYPHPVLTAQGKLEADVYLLEKPFTGPVLLDKVREVL 143 >gi|301384033|ref|ZP_07232451.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058739|ref|ZP_07250280.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302131701|ref|ZP_07257691.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 644 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 523 DETILVVDDEPAVRLLIAELLEDLGYAVLQAERGADALVVLQSKAAIDLLITDVGLPGGM 582 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A E+ PDLKV+F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 583 NGRQVADAAREVRPDLKVLFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 641 >gi|153005352|ref|YP_001379677.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028925|gb|ABS26693.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 452 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L++ L A ++V + + A+A + + ++LTD+ MP +DGIE Sbjct: 3 RILVVDDDPLAQRVLVRLLCPA-HDVHAYGDPAAALRHLADRGADVILTDLRMPGLDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RA ELDP++ V ITG +++A ++ LSKPF D++ V R + Sbjct: 62 LLSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAI 116 >gi|90426340|ref|YP_534710.1| response regulator receiver domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90108354|gb|ABD90391.1| response regulator receiver domain protein (CheY-like) [Rhodopseudomonas palustris BisB18] Length = 123 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 ++L+A+D++ +R + +AL G++ V+ +GA A D + + F LLLTDI MP MDG Sbjct: 3 RVLIADDEESVRLMVARALALDGHQTVTAEDGAEALDILNRDRRSFDLLLTDIKMPIMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I LA A P L ++ +TGFA V++KPF + D+ Sbjct: 63 IALALAAASGFPKLTILLMTGFADQRERTSGLDAIVHDVIAKPFSVEDI 111 >gi|241204025|ref|YP_002975121.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857915|gb|ACS55582.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 573 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 IL+ EDD+++R ++L + GY V+ +G A + + L+ TDIVMP+M G + Sbjct: 448 ILVVEDDENVRTMTAESLHELGYTVLQAASGMEALMLLEQNAAVDLIFTDIVMPQMSGRQ 507 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 LA E P +++++ TG+ A+ + +L+KPF L L +++ LL + Sbjct: 508 LADIVREKWPAIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELLNV 564 >gi|319405628|emb|CBI79251.1| Sensor protein [Bartonella sp. AR 15-3] Length = 850 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V+ +G A + + ++++D+VMPEMDG Sbjct: 733 VLLVEDEDSVRMSSVRALQMRGYTVLEATSGVEALAILEKSRGIVDIIVSDVVMPEMDGP 792 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 L A + P++K++F++G+ A N P++A LSKPF L+ L V L Sbjct: 793 TLLIEARKNYPNIKIIFVSGYTKDAFT--KNLPEDAIFGFLSKPFTLKQLALAVKETL 848 >gi|170721286|ref|YP_001748974.1| response regulator receiver protein [Pseudomonas putida W619] gi|169759289|gb|ACA72605.1| response regulator receiver protein [Pseudomonas putida W619] Length = 116 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 9/118 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 +L+ EDDD +R ++ L + GYE + + ASA K+ ++P +LL+TD+ +P+M Sbjct: 2 HLLVVEDDDIVRMLMVDVLDELGYETLEADC-ASAALKILQDPGKALALLMTDVGLPDMR 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA++A + P L V+F +G+A + P+ ++ KPF + L ++V +L Sbjct: 61 GEELAKQARAIRPALPVLFASGYAE-----SLDVPEGMHMIGKPFSIEQLRDKVVGIL 113 >gi|146340371|ref|YP_001205419.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146193177|emb|CAL77189.1| putative sensor histidine kinase with two PAS and a response regulator receiver domains [Bradyrhizobium sp. ORS278] Length = 698 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 Q IL+ +D+ +R +++ L + GY V+ +G + ++ LL+TD+ +P M+ Sbjct: 579 QTILVVDDEPTVRMLVMEVLDERGYAVIEAKDGPTGLAALQSNVRIDLLITDVGLPGGMN 638 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A PDLKV+FITG+A A+ + +VL+KPF + L V ++ Sbjct: 639 GRQLADAARATRPDLKVLFITGYAENAILGNGQLAPGMQVLTKPFDVEALAGRVTEMI 696 >gi|104782114|ref|YP_608612.1| sensory box histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111101|emb|CAK15821.1| putative sensory box histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 659 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 +++LL +D+ ++R + + L + G+EV + +A + R PF L++TDI +P Sbjct: 540 ERVLLVDDEVNLRTLMKEVLVERGFEVCDVTDANAALGQFRHAGPFDLVITDIGLPGGFS 599 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++AR + P+ K++FITGF + +L KPF L LV +V+R+L Sbjct: 600 GSQVARALRLIRPEQKILFITGFTEQPVEQAMLDEPGTALLFKPFSLETLVGQVHRIL 657 >gi|119896985|ref|YP_932198.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] gi|119669398|emb|CAL93311.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] Length = 685 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 3/103 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MDGI 62 +LL ED+ +R+ + L GY V+ NG A + E ++L++D VMP + G Sbjct: 563 VLLVEDEPAVRQVIRMQLTALGYPVIEAENGVEALSLLENVEDIAILVSDTVMPGGIGGR 622 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ELA RA L PDL ++ ITG+A+ + NP + P + VL KPF Sbjct: 623 ELAARARRLRPDLPILLITGYASSSGNP-TPPPADIPVLRKPF 664 >gi|150396735|ref|YP_001327202.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150028250|gb|ABR60367.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 872 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + + E ++++D+VMPEMDG Sbjct: 755 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALEIMEELAGAVDIVVSDVVMPEMDGP 814 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 815 TLLRELRKKYPDLKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLAVAVREML 870 >gi|115378738|ref|ZP_01465884.1| PAS sensor Signal Tranduction Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|310821719|ref|YP_003954077.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115364254|gb|EAU63343.1| PAS sensor Signal Tranduction Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|309394791|gb|ADO72250.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 853 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD ++R +++ L + GY V+ N+G +A ++ P L+ TD+VMP + Sbjct: 593 SETILVVEDDAEVRATVVELLAELGYRVLKANDGQTALAVLQSGVPIDLVFTDVVMPGPV 652 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+A L P ++V+F +G+ A+ +LSKP+ DL ++ + Sbjct: 653 RSPELARQAKALFPHIQVLFTSGYTENAIVHGGRLDPGVSLLSKPYRREDLARKLRHMF 711 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +LL EDD+ +R ++ L G+ V++ + A + + F +L TD+ +P G Sbjct: 729 SRHVLLVEDDEAIRTSALELLDVLGHRVLAVASAEEARAALATDHFDILFTDVSLPGQSG 788 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHL 107 +ELAR A P L+V+ +G+ V L P A +A +L KP+ L Sbjct: 789 VELAREAVHQYPRLQVIIASGY-GVTLTPGEGALLGSAVLLPKPYDL 834 >gi|134292158|ref|YP_001115894.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134135315|gb|ABO56429.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 586 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V+S ++G +A + P LL TD++MP + Sbjct: 462 ETILIVEDDADVRLTVVDMLAQLGYKVLSASDGEAALRILDSGTPIDLLFTDVIMPGHIK 521 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P L V+F +G+ + +L KP+ +L + +L Sbjct: 522 GGELARRAAQRTPPLPVLFTSGYTRDEIFHSGRLDPGVMLLGKPYRRDELAARIRSVL 579 >gi|301064766|ref|ZP_07205146.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] gi|300441141|gb|EFK05526.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] Length = 453 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 56/106 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED R L L GY V + +G A +++E+ F L+LTD MP MDG+ L Sbjct: 6 ILVVEDGKSQREMLRDFLKDEGYPVTAAEDGKDALSRLQEDCFDLVLTDYKMPGMDGMAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + EL+P++ V+ +T F V ++ A +SKP L +L Sbjct: 66 LKAGKELNPEVDVVVMTAFGTVETAVNAMKAGAADYISKPIDLDEL 111 >gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 235 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAED++ + + L GY+V + NNG A K +EE F+L++ D++MPE+DG Sbjct: 5 KRILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDGF 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 +A + ++ +MF+T + + K A L+KPF+L +L+ VN L+ Sbjct: 65 VVAETIRLENSEVPIMFLTA-KNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLV 120 >gi|304392523|ref|ZP_07374463.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Ahrensia sp. R2A130] gi|303295153|gb|EFL89513.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Ahrensia sp. R2A130] Length = 398 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 64/118 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + L +DD+D+R LI++L AG++V ++GA D + S++++DI MP MD Sbjct: 2 LEPTVWLVDDDEDLRPALIQSLQLAGFDVHGFSDGAQLLDALAGTIPSVVVSDIRMPRMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL ++P L ++ +TG VAL + + + KPF + L + +L Sbjct: 62 GLELLEAIKGIEPRLPIILMTGHGDVALAVKAMQSGASDFVEKPFEMSRLCKAIEAVL 119 >gi|297570045|ref|YP_003691389.1| response regulator receiver protein [Desulfurivibrio alkaliphilus AHT2] gi|296925960|gb|ADH86770.1| response regulator receiver protein [Desulfurivibrio alkaliphilus AHT2] Length = 216 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN++ IL+ +DD D+R + + L G+ VV C + SA +++ PF+L+L D++MP Sbjct: 1 MNEQGPILVVDDDRDLRETIEEILSPEGFNVVCCGSADSALALIQDTPFALILLDMIMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DG+ ++ P ++++ IT +A++ ++ L KPF + L+ V R Sbjct: 61 TDGMTAINLIRKVSPRVRIVVITAYASIPNAVEAMRRGANDYLVKPFSIETLLTTVRR 118 >gi|213969072|ref|ZP_03397211.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|213926070|gb|EEB59626.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|331016318|gb|EGH96374.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 695 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEPAVRLLIAELLEDLGYAVLQAERGADALVVLQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A E+ PDLKV+F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAAREVRPDLKVLFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 692 >gi|146307849|ref|YP_001188314.1| two component, sigma54 specific, Fis family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576050|gb|ABP85582.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas mendocina ymp] Length = 470 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L G++ + + +A + EEPF L+++D+ MP MD Sbjct: 1 MAAKVLLVEDDRALREALADTLCLGGHDYRAVDCAEAALVALTEEPFGLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L + P L V+ +T F AV D+ A L KPF R L+ V R Sbjct: 61 GHQLLAQIRARYPQLPVLLMTAFGAVERAVDAIRQGAADYLVKPFEPRTLLELVAR 116 >gi|167647511|ref|YP_001685174.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167349941|gb|ABZ72676.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 702 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MD 60 + IL+ EDD + + L GY V + +N ASA ++R + F +L +D+VMP + Sbjct: 557 ETILVVEDDPAVLALAVDTLRSFGYRVTTASNAASALRRLRGRQAFDMLFSDVVMPGGVS 616 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIELARRA L PDLK++ +GF +N ++ KP+ LV+ V Sbjct: 617 GIELARRARVLRPDLKILLTSGFVGEEAEAWAN---EFPMIDKPYEPSRLVSRV 667 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD+ I+AL G E+V +G A K+ + ++++L D+ MP MDG E Sbjct: 20 KILIVDDDERNAFAAIQALEALGQELVVARSGEEALRKLLVDDYAVILLDLHMPGMDGYE 79 Query: 64 LAR--RATELDPDLKVMFITG 82 A R + D+ ++F+T Sbjct: 80 TAALIRQRRRNRDIPIVFLTA 100 >gi|320354561|ref|YP_004195900.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123063|gb|ADW18609.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 460 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 8/118 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ MR FL L K GY+V + +G +A ++ + F L++TDI MP M G++L Sbjct: 6 ILVVDDELSMREFLKILLEKEGYQVATAADGQAALERAEKTAFDLVITDIRMPGMSGLDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS--NAPKNAKV--LSKPFHLRDLVNEVNRLL 118 R +L D+ V+ IT FA +PD A K+ ++KPF++ ++ + +L Sbjct: 66 LARLKQLQADIGVIMITAFA----SPDDAVTAMKSGAFDYITKPFNVDEIKTVIRAVL 119 >gi|148265593|ref|YP_001232299.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399093|gb|ABQ27726.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 457 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD +R L L ++GY+V S ++G DK R+E F+++L D+ MP MDG+E Sbjct: 11 KILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMPGMDGVE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL------VNEVNRL 117 + R+ +V+ TG + + L+KP L +L NE NRL Sbjct: 71 VLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKANEKNRL 130 >gi|309790124|ref|ZP_07684697.1| GAF sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227849|gb|EFO81504.1| GAF sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1029 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 49/81 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD +RR +++ L + G+ VV +G+ A + + + F LL +D+ MPEM G + Sbjct: 898 KILVVEDDPAVRRVIVQILRRVGHTVVDVESGSQALELLHSQQFDLLCSDLGMPEMSGWD 957 Query: 64 LARRATELDPDLKVMFITGFA 84 L RA L P L + ITG+ Sbjct: 958 LVARARTLHPRLITILITGWG 978 >gi|288959452|ref|YP_003449793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911760|dbj|BAI73249.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 929 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 5/113 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q L+AED+DD+R+ + + L G+ VV +G A + V + + SLL++DIVMP + G Sbjct: 812 QLALVAEDNDDVRQVMRRQLVDLGFSVVEAASGDEAAELVGQIDGLSLLVSDIVMPGLSG 871 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +ELARRA L P ++V+ ++GF + P +A +L+KP+ RDLV + Sbjct: 872 VELARRARRLRPAMRVVLVSGFTVGY----GDLPADAVILTKPWDKRDLVAAI 920 >gi|221639945|ref|YP_002526207.1| sensor protein [Rhodobacter sphaeroides KD131] gi|221160726|gb|ACM01706.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 941 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+A+D+ D+ R L+ L AG EVV C + A ++++P + LL+TD MP Sbjct: 819 RTILVADDNADVLRVLVAFLEGAGAEVVPCADPRDALAALQDDPQIWDLLVTDYDMPNFS 878 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L R A +L PDL V+ IT + AP+ L KP L++ R + Sbjct: 879 GADLCRAANDLAPDLPVLLITALPDWRSRISAAAPRFTAELGKPLGRATLLDAAERAIGA 938 Query: 121 K 121 K Sbjct: 939 K 939 >gi|322419518|ref|YP_004198741.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125905|gb|ADW13465.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 798 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +L+ EDDD +R + L K GY V+ +A + L+L+D++MPEM+G+ Sbjct: 679 VLVVEDDDMLRAMATQMLEKIGYRVIQAATPRAAISICVDAGTEIDLVLSDVIMPEMNGL 738 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 E+AR EL P+ KV+F+TG+++ + K + KPF + L Sbjct: 739 EMARNIAELRPETKVLFMTGYSSDIIAKRGIITDKEMHYIQKPFGMEGL 787 >gi|118591375|ref|ZP_01548773.1| response regulator receiver (CheY-like protein) [Stappia aggregata IAM 12614] gi|118436047|gb|EAV42690.1| response regulator receiver (CheY-like protein) [Stappia aggregata IAM 12614] Length = 131 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +ILL EDD+ +R F+ +AL G+ V + +G A + + E F LLL+DI MP MDG Sbjct: 3 RILLTEDDEAVRSFVKRALELDGHSVEAAEDGGEAVEVLTREKGSFDLLLSDIKMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 I LA A P + ++ +TGFA + V++KPF L D+ V Sbjct: 63 IALALHAARDYPRMPILLMTGFADQRERANGLETLVHDVVTKPFSLADIRKAVR 116 >gi|114705476|ref|ZP_01438384.1| response regulator receiver domain protein [Fulvimarina pelagi HTCC2506] gi|114540261|gb|EAU43381.1| response regulator receiver domain protein [Fulvimarina pelagi HTCC2506] Length = 133 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL+AED+ +R + +AL G++V +GA A D + E F L+L+DI MP M GI Sbjct: 4 ILIAEDEQAVRHLVARALRMDGHDVSEAEDGAEALDLLDEAGGRFDLILSDIRMPAMTGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELA A P +K++ +TG+A VL KPF + ++ V L Sbjct: 64 ELAHEAARKWPKIKILLMTGYAEQKEAATELTAIVEDVLDKPFAIGEVRERVGETLA 120 >gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD + FL L K GY+V NG A DK+R E F+L+L DI+MP++D Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-------KPFHLRDLVNE 113 G E +R L ++ ++F+T DS K +S KPF L +L Sbjct: 61 GFEAIKRIRRL-TNIPIIFLTA-------KDSQQDKIKGFISGCDDYITKPFDLVELSLR 112 Query: 114 VNRLL 118 V+ +L Sbjct: 113 VSAIL 117 >gi|94967697|ref|YP_589745.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94549747|gb|ABF39671.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 831 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 ++ +L+ ED+ D+R ++++L GY V NG A + + +L+TD+VMP M Sbjct: 707 SESVLVVEDEPDLRAAVVESLRTLGYSVAHACNGHQALEIAEKLGTIDVLVTDVVMPIMR 766 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL R ++ P +K++F++G++ +NPD + L+KP L L + +L Sbjct: 767 GTELGRYVRKMFPGVKIIFMSGYSDGLVNPDE-LDADTIFLAKPLSLSVLAKNIRAIL 823 >gi|85858813|ref|YP_461015.1| sigma-54 dependent transcriptional regulator [Syntrophus aciditrophicus SB] gi|85721904|gb|ABC76847.1| sigma-54 dependent transcriptional regulator [Syntrophus aciditrophicus SB] Length = 473 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 57/107 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD MR L + L GY + + +NG A K R+ F ++TD+ MP M G+E Sbjct: 7 RILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGMGGME 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + ++ P+ V+ IT + V ++ + + KPF L D+ Sbjct: 67 VLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDI 113 >gi|21230644|ref|NP_636561.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769361|ref|YP_244123.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112228|gb|AAM40485.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574693|gb|AAY50103.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 120 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED ++R + +AL AG V + ++G A +RE P+ ++ +DI MP M G Sbjct: 6 RLLMVEDQQELRDLIGEALRDAGITVDTADDGHCALRMLRENGPYDVVFSDIRMPNGMSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ + ++L P +++ +GFA L P P L KP+ LR L+ Sbjct: 66 IELSEQVSQLLPQARIILASGFAKAQLPP---LPAQVDFLPKPYRLRQLIG 113 >gi|10120794|pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins Trapped In A Crystal Lattice Reveals The Mechanism Of Molecular Recognition And Phosphotransfer In Singal Transduction gi|10120795|pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins Trapped In A Crystal Lattice Reveals The Mechanism Of Molecular Recognition And Phosphotransfer In Singal Transduction gi|10120796|pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins Trapped In A Crystal Lattice Reveals The Mechanism Of Molecular Recognition And Phosphotransfer In Singal Transduction gi|10120797|pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins Trapped In A Crystal Lattice Reveals The Mechanism Of Molecular Recognition And Phosphotransfer In Singal Transduction Length = 119 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MDG Sbjct: 1 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDG 60 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 117 >gi|296282671|ref|ZP_06860669.1| two-component response regulator [Citromicrobium bathyomarinum JL354] Length = 811 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 ++LL ED+D +R +AL +AG+ V + +G ++ F L+++D+VMP MDG Sbjct: 692 RVLLVEDEDMVRAVAERALVRAGFTVTAQPDGEDGLAEIANGGVFDLVVSDVVMPGMDGP 751 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR +L PDL ++F++G+A L + + N ++KPF + + +V +L Sbjct: 752 AMARAIRKLKPDLPILFMSGYAEETLRNEISI-DNMYFIAKPFSVEQISRKVGEVL 806 >gi|218781281|ref|YP_002432599.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218762665|gb|ACL05131.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 208 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 43/67 (64%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD R FL L + GYE + NGA A+ ++++ FSL L D +MPEMDG+EL Sbjct: 3 ILIAEDDATSRHFLEAILTQWGYETTTAKNGAEAWQILQDKKFSLFLLDWMMPEMDGLEL 62 Query: 65 ARRATEL 71 ++ L Sbjct: 63 CQKIRSL 69 >gi|15888688|ref|NP_354369.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15156426|gb|AAK87154.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 861 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + + E ++++D+VMPEMDG Sbjct: 742 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEVMEELEGKVDIVVSDVVMPEMDGP 801 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 802 SLLRELRKSYPDLKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLAIAVREML 857 >gi|323529366|ref|YP_004231518.1| histidine kinase [Burkholderia sp. CCGE1001] gi|323386368|gb|ADX58458.1| histidine kinase [Burkholderia sp. CCGE1001] Length = 552 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 2/112 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ EDD ++R L+++L GY V +G + +++ ++ LL+ D MP M+GI Sbjct: 437 KRVLVIEDDSEVRAMLVESLKMLGYNVTEAADGRAGLNRLEDDNPDLLMVDFAMPGMNGI 496 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ A ++ DL V+ TG+A V ++ A + VL KPF L DL + Sbjct: 497 DVIAEARKMRRDLPVILATGYADVDIS--GLAVERCTVLRKPFQLDDLARTI 546 >gi|154496539|ref|ZP_02035235.1| hypothetical protein BACCAP_00831 [Bacteroides capillosus ATCC 29799] gi|150274172|gb|EDN01263.1| hypothetical protein BACCAP_00831 [Bacteroides capillosus ATCC 29799] Length = 228 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + R + L + GYE V C A AYD + E F L+++DI+MP++DG E Sbjct: 8 KILVVEDDKALNRGVCAFLNRNGYEAVGCLGAAEAYDAMYETVFDLIVSDIMMPDIDGFE 67 Query: 64 LARRATELDPDLKVMFIT 81 + L+ ++ ++F+T Sbjct: 68 FVQSVRTLNENIPILFMT 85 >gi|28868697|ref|NP_791316.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851936|gb|AAO55011.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 695 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEPAVRLLIAELLEDLGYAVLQAERGADALVVLQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A E+ PDLKV+F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAAREVRPDLKVLFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 692 >gi|212224345|ref|YP_002307581.1| chemotaxis response regulator [Thermococcus onnurineus NA1] gi|212009302|gb|ACJ16684.1| chemotaxis response regulator [Thermococcus onnurineus NA1] Length = 120 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR L K L + G++VV NG A K +E ++ DIVMPEMDGI Sbjct: 3 RVLVVDDAAFMRMLLKKILTQGGHQVVGEAANGKEAVQKYQELKPDIVTMDIVMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + ++DP+ K++ IT ++ + + KPF ++ E+NR+L+ Sbjct: 63 TAVKEIKKVDPNAKIIMITAVGQEGKVMEALKAGASGYIVKPFQAPKVLEEINRVLS 119 >gi|23013750|ref|ZP_00053612.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 925 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 Q L+AEDD D+R L L G+ VV +G A D + E SL+++DIVMP M Sbjct: 805 QGQLALIAEDDADVRAVLRGQLVDLGFSVVEAESGDEAADLFGQIEGLSLVVSDIVMPGM 864 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIELA R P ++V+ I+GF + +P+++ + +L KP+ DL V R Sbjct: 865 SGIELAERIRAERPAIRVILISGF-SFDTSPEAD---DLVILRKPWDRSDLAAAVAR 917 >gi|83311727|ref|YP_421991.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946568|dbj|BAE51432.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 925 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 Q L+AEDD D+R L L G+ VV +G A D + E SL+++DIVMP M Sbjct: 806 GQLALIAEDDADVRAVLRGQLVDLGFSVVEAESGDEAADLFGQIEGLSLVVSDIVMPGMS 865 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIELA R P ++V+ I+GF + +P+++ + +L KP+ DL V R Sbjct: 866 GIELAGRIRAERPSIRVILISGF-SFDTSPEAD---DLVILRKPWDRSDLAAAVAR 917 >gi|224369327|ref|YP_002603491.1| sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) [Desulfobacterium autotrophicum HRM2] gi|223692044|gb|ACN15327.1| sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) [Desulfobacterium autotrophicum HRM2] Length = 450 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + L L + + VV + A+A ++E+P LL++DI MP G+E Sbjct: 6 RILIVDDDPSILEVLDARLTASDFSVVRAQDAATAIQILKEQPIDLLISDIKMPRKSGME 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + + PDL V+F+T + + D+ +SKPF R L+ ++ L +N Sbjct: 66 LFAQIQKTLPDLPVIFLTAYGTIPDAVDAIRQGAVDYVSKPFDGRMLIRKIKDTLAAQN 124 >gi|153003486|ref|YP_001377811.1| putative GAF sensor protein [Anaeromyxobacter sp. Fw109-5] gi|152027059|gb|ABS24827.1| putative GAF sensor protein [Anaeromyxobacter sp. Fw109-5] Length = 622 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + AL AG+ + ++ A + +E F LL+TD+VMP +DG+ Sbjct: 5 RILVVDDERLYQELFRDALAGAGHATRTASSAEEALALLADERFELLVTDMVMPGLDGVG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R A DPDL+V+ +TG V L ++ A L+KP +LV R L Sbjct: 65 LVREAKRRDPDLEVVAVTGREEVRLAVEAMKAGCADFLTKPLEPEELVEIAERAL 119 >gi|119387110|ref|YP_918165.1| two component, sigma54 specific, Fis family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377705|gb|ABL72469.1| two component, sigma54 specific, transcriptional regulator, Fis family [Paracoccus denitrificans PD1222] Length = 448 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 61/116 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LL EDD+ MR +AL AG+ V + +G A +++DI MP MD Sbjct: 1 MTPRVLLVEDDEQMRSSTAQALELAGFTVEALASGEEALALAGSGFAGAVVSDIRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ L R E+DP++ V+ +TG A V L ++ + KPF +++L + R Sbjct: 61 GMTLLGRLHEVDPEIPVILVTGHAEVPLAVEAIRGGAYDFIEKPFVVQELATVIRR 116 >gi|146302697|ref|YP_001197288.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146157115|gb|ABQ07969.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 228 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 10/122 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL EDD+ + L + YEV+ C NG S + + E F + + DI+MP+MDG Sbjct: 3 NFKILYTEDDETLAFLTKDNLEQNNYEVIHCTNGKSGLETFKNEDFDICIFDIMMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 ELA ++D D+ ++F+ +A L D K ++ L KPF + +L+ ++ Sbjct: 63 FELAEEVRKIDNDVPIIFL---SAKTLKEDR--IKGLRLGADDYLVKPFSIEELILKIEV 117 Query: 117 LL 118 L Sbjct: 118 FL 119 >gi|83955441|ref|ZP_00964072.1| sensory box sensor histidine kianse/response regulator [Sulfitobacter sp. NAS-14.1] gi|83840085|gb|EAP79260.1| sensory box sensor histidine kianse/response regulator [Sulfitobacter sp. NAS-14.1] Length = 761 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ ++ A + ++ ++ +TD++MP MDG Sbjct: 645 VLLVEDEAPVRAFASRALRMRGYTVLEADSAEMALKTLEDQALNIDVFVTDVIMPGMDGP 704 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R A + P + V+F++G+A + N+ L KPF L +L N VN Sbjct: 705 TWVREALKARPGVPVVFVSGYAEDSFGDAQMTIPNSVFLPKPFSLTELTNTVN 757 >gi|218528120|ref|YP_002418936.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520423|gb|ACK81008.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 810 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDDD++R + LG+ GY V+ + ASA V P L+ TD++MP + Sbjct: 529 DETILVVEDDDEVREVAVSMLGELGYRVLKARDAASALAIVESGLPIDLIFTDVMMPGTL 588 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+A + P++ V+F +G+ A+ ++L KP+ L ++ +L Sbjct: 589 RSPELARKAKQRLPNVAVLFTSGYTQNAIVHGGRLDAGVELLGKPYTREALARKIRHVL 647 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDDD +R + L AG V + A+ + + +LLTD+ +P + G+EL Sbjct: 681 VLLAEDDDLIRDTTAEMLTDAGCRVRLAGSAEEAFRLLEADVVDVLLTDVGLPGISGLEL 740 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 A+ P+ ++ +G V + A A ++ KP+ Sbjct: 741 AKTVRTRQPEACIVLASGDKGVGSDA---AFLGASLVVKPY 778 >gi|148654515|ref|YP_001274720.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] gi|148566625|gb|ABQ88770.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] Length = 513 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD + F + L GY V + NG A ++ F L+LTD+ MPEM G+EL Sbjct: 14 ILVVEDDPMVNSFCARLLHMKGYSVKTVFNGREALTMLQTNRFDLVLTDLQMPEMGGMEL 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R E PD+ + T +A V ++ L+KPF + +L V R Sbjct: 74 LREMREQHPDIDTIMFTAYATVETAREALKLGAFDYLTKPFSVDELERTVRR 125 >gi|78224120|ref|YP_385867.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195375|gb|ABB33142.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 470 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 66/117 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ +D+ +R L + L K G+ V + +G A ++++EE FSL++TD+ MP M G Sbjct: 3 NIDVLVVDDEAVIREGLRRILEKEGFHVETSASGQIALERMQEENFSLVITDLKMPGMSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ + L P++ V+ ITGF+ V ++ ++KPF + +V + L Sbjct: 63 MEVLKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPEQITEKVRKAL 119 >gi|291288263|ref|YP_003505079.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] gi|290885423|gb|ADD69123.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] Length = 122 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 65/118 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +ILLAED++ + L GY+V S +NG A DKV++ + L++TD+VMP D Sbjct: 1 MAYRILLAEDNEMEQSALKDIFTSEGYQVDSVSNGLFALDKVKDNEYHLIVTDLVMPVSD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+ + LD ++ V+ +TG+ + + VL KP+ + L++ ++L Sbjct: 61 GIQFLYSLSSLDREIPVIVLTGYDNIENMLSAYQMGAIDVLYKPYDVDKLLDLCRKIL 118 >gi|331006646|ref|ZP_08329929.1| C4-dicarboxylate transport transcriptional regulatory protein [gamma proteobacterium IMCC1989] gi|330419535|gb|EGG93918.1| C4-dicarboxylate transport transcriptional regulatory protein [gamma proteobacterium IMCC1989] Length = 468 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+R L ++L AG++V+ + D + + L+TDI M DG++L Sbjct: 6 ILLVDDDADLRHALSQSLVLAGFDVLEYESAEGVLDNIHRGLYGALITDIRMVGTDGLQL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A E+DP + V+ ITG VA+ ++ ++ KPF L N V R L Sbjct: 66 MSMALEIDPSMPVILITGHGDVAIAVEAMRAGAYDLIEKPFSADRLSNVVLRAL 119 >gi|146280541|ref|YP_001170694.1| two-component hybrid sensor and regulator protein [Pseudomonas stutzeri A1501] gi|145568746|gb|ABP77852.1| two-component hybrid sensor and regulator protein [Pseudomonas stutzeri A1501] Length = 928 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD ++ +I+ L GY V+ N+ SA ++ LL TD+VMP + Sbjct: 690 SETILVVEDDLPVQATVIELLTGLGYSVLRANDAQSALSILQSGIGIDLLFTDVVMPGPL 749 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+A L PD+ V+F +G+ A+ ++LSKP+ DL +V +LL Sbjct: 750 SSTELARQARLLQPDVAVLFTSGYTRNAVVHGGRLDPGVELLSKPYRQEDLARKVRQLL 808 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +++ ED + + + + GY V + +A + E+ F LL D+ +P G Sbjct: 821 QWVMVVEDQPQLLTLTCEMVEELGYGVRGYPDAETAAKALHEQRFDQLLLDVNLPGRSGP 880 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E A A + P L+++F++G + DS P A+ L KPF D + EV R Sbjct: 881 EFAAEALKAQPWLRLVFVSGEGRI----DSRLP--ARSLPKPFSF-DQLAEVLR 927 >gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 230 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD + FL L K GY+V NG A DK+R E F+L+L DI+MP++D Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-------KPFHLRDLVNE 113 G E +R L ++ ++F+T DS K +S KPF L +L Sbjct: 61 GFEAIKRIRRL-TNIPIIFLT-------TKDSQQDKIKGFISGCDDYITKPFDLVELSLR 112 Query: 114 VNRLL 118 V+ +L Sbjct: 113 VSAIL 117 >gi|188579430|ref|YP_001922875.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179342928|gb|ACB78340.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 1048 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I+LA+D+ DMR + + LG+ ++VV+ +GA+A + +R+ P LLLTD++MP +DGI Sbjct: 618 RIVLADDNADMRAYAERLLGR-DHQVVAVGDGAAALEALRKAPADLLLTDVMMPVLDGIA 676 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L RA DP L+ V+ ++ A + L KPF R+L Sbjct: 677 LT-RAVRADPALRTVPVIMLSARAGAEAGVEGLEAGADDYLVKPFSAREL 725 >gi|83594369|ref|YP_428121.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577283|gb|ABC23834.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 1067 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ EDD +R +L + GY+V+ NGA A + P +L+ TDI +P MDG Sbjct: 810 LLVVEDDPSVRAHSTASLRELGYQVIEAGNGAEALGHLAAHPDVALMFTDIGLPGGMDGR 869 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A PDL V+ TG+A ALN + +L+KPF L +V+ +L Sbjct: 870 QLAELARRNRPDLAVVLTTGYARDALNGNVPLAPRMALLTKPFSFTALALKVHEVL 925 >gi|331019261|gb|EGH99317.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 846 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ ++ + +R + LL+TD+ +P M+ Sbjct: 727 ETILIVDDEPTVRMLLTDALGDLGYTLIEASDSLAGLKLLRSDVHIDLLITDVGLPGGMN 786 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E+ P LK +FITG+A A D KVL+KPF + L + V L+ Sbjct: 787 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMKVLTKPFAIDVLASRVQELM 844 >gi|89068276|ref|ZP_01155686.1| sensory box sensor histidine kianse/response regulator [Oceanicola granulosus HTCC2516] gi|89046193|gb|EAR52251.1| sensory box sensor histidine kianse/response regulator [Oceanicola granulosus HTCC2516] Length = 758 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 ILL ED+ +R F +AL GY V+ + SA + +++ + +TD+VMP +DG Sbjct: 642 ILLVEDEAPVRAFASRALRLRGYTVLEADCAESALEILQDAELVIDVFVTDVVMPGLDGP 701 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A PD +V+F++G++ + + N+ L KPF L +L V R L Sbjct: 702 TWVREALTERPDTRVVFVSGYSEETIAENQTRIPNSVFLPKPFSLSELTATVQRQL 757 >gi|313498282|gb|ADR59648.1| Response regulator receiver protein [Pseudomonas putida BIRD-1] Length = 116 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 11/119 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 +L+ EDDD +R +++ L GY+V+ + +A +V E+P +L++TD+ +P+M Sbjct: 2 HLLVVEDDDIVRMLMVEVLDDLGYKVIEAEDATAAL-RVLEDPSQALALMMTDVGLPDMR 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA +A EL P L V+F +G+A DS N P+ ++ KPF + L + V +L Sbjct: 61 GEVLAGKARELRPLLPVLFASGYA------DSFNVPEGMHLIGKPFSIDQLRDTVVGIL 113 >gi|116251409|ref|YP_767247.1| two-component sensor histidine kinase [Rhizobium leguminosarum bv. viciae 3841] gi|115256057|emb|CAK07138.1| putative two-component sensor histidine kinase [Rhizobium leguminosarum bv. viciae 3841] Length = 548 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 IL+ EDD+++R ++L + GY V+ +G A + + L+ TDIVMP+M G + Sbjct: 423 ILVVEDDENVRTMTAESLHELGYTVLQAASGMEALMLLDQNAAVDLIFTDIVMPQMSGRQ 482 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 LA E P +++++ TG+ A+ + +L+KPF L L +++ LL + Sbjct: 483 LADIVQEKWPAIRILYTTGYTRNAIVHNGVLDHGVSLLAKPFSLEQLAHKIRELLNV 539 >gi|197118519|ref|YP_002138946.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087879|gb|ACH39150.1| sensor histidine kinase, Cache, PAS, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1260 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 ++ I + EDD + R + L + GY V+ +G A + + R SL L D++MP+M Sbjct: 1139 SETIFVVEDDASVGRLVESVLKRYGYNVILAGSGEEALEIYQSRSHDISLALLDVIMPKM 1198 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G EL + E P LKV+F++G+ A + A ++ KP +L +V +L Sbjct: 1199 NGKELCEKLRERSPQLKVLFLSGYTADLIQDKGIAMDGIDLIRKPAKPMELARKVREML 1257 >gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 224 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + L + GY V N +AYD ++ E F L+L+DI+MP++DG + Sbjct: 3 KILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGYQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ DP + ++FIT +A + KP + +L+ + LL Sbjct: 63 FAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALL 117 >gi|159898658|ref|YP_001544905.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891697|gb|ABX04777.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 943 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL+ EDD+ +R LI L + GY + + +SA E+P L+++DI +P+ DG Sbjct: 824 ILVVEDDEAVRMVLIDVLDELGYHTLEAEDASSAL-TFFEQPTTIDLVISDIGLPKTDGY 882 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + + P L ++ ++G+ A ++LSKPF + DL N+++ LL Sbjct: 883 DLALQIRQRYPTLPILLVSGYTDRAAVRSGELEPQMELLSKPFEITDLANKIHDLL 938 >gi|291562031|emb|CBL40847.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [butyrate-producing bacterium SS3/4] Length = 120 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI+L +D MR + KAL +GY + + +GA A K EE +++ DI MP MDG+ Sbjct: 3 KIMLVDDAAFMRMMIKKALSSSGYNDFIEAQDGAEAVKKYSEEKPDMVIMDITMPNMDGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ E DP+ KV+ T ++ D+ + KPF + +V VN +L Sbjct: 63 QALKKIREGDPNAKVVMCTAMGQESMVVDAIKSGARDFVVKPFDAQRIVKTVNDIL 118 >gi|163759609|ref|ZP_02166694.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283206|gb|EDQ33492.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 875 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GYEV G A + + E ++++D+VMPEMDG Sbjct: 758 VLLVEDEEAVRRGGKRMLEARGYEVHEAGTGVEALEVLAELEGKVDIVVSDVVMPEMDGP 817 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + PD+K +F++G+A A N P +AK L+KPF L+ L V +L Sbjct: 818 TLLTELRKDYPDMKFIFVSGYAEDAFA--KNLPADAKFGFLAKPFSLKQLATAVREML 873 >gi|222054272|ref|YP_002536634.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221563561|gb|ACM19533.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 887 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED++ +R L + L GY+V+ + A LLLTD++MP+MDG EL Sbjct: 766 ILLVEDNELVRTMLKELLLGIGYDVLDAEHPRQAILLAEGRQIDLLLTDVIMPDMDGPEL 825 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR P L+V+F++G+ + + A + KPF + D+V V ++ Sbjct: 826 HRRLLAAYPGLRVIFMSGYTDNVVVQLVKEVQMANFIQKPFTVHDIVERVAAMM 879 >gi|94270842|ref|ZP_01291836.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1] gi|93450644|gb|EAT01749.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1] Length = 650 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59 + IL+ ED+ +R L L ++GY+V NG A + E+ L++TD+VMP M Sbjct: 531 GEHILVVEDEASLRELLEAILSRSGYKVTLAANGGEALLLMEEKGLQPDLVITDVVMPGM 590 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R PDLKV+F++G+ A+ + + KPF R + +V +L Sbjct: 591 SGSVLTERLRRKQPDLKVLFMSGYTDDAIVHHGVLNQGTPFIQKPFTRRAMAEKVRAVL 649 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 8/126 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL+AEDD R L L +AG+EV +GA A++++++ + L + D +MP MDG+ Sbjct: 2 RILIAEDDSTSRNMLAAILREAGHEVTETFDGAGAWEELQKPDAPRLAILDWMMPGMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN---R 116 E+ R ++ D I A D A +A L+KPF +++ V R Sbjct: 62 EVVHRVRGVETDQPPYLIM-LTAKGEKADIIAGLDAGANDYLAKPFDAGEMLARVEVGRR 120 Query: 117 LLTIKN 122 L+ +N Sbjct: 121 LVKTQN 126 >gi|86132873|ref|ZP_01051464.1| two component, sigma54 specific, transcriptional regulator [Dokdonia donghaensis MED134] gi|85816579|gb|EAQ37766.1| two component, sigma54 specific, transcriptional regulator [Dokdonia donghaensis MED134] Length = 387 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K L + Y+V +G +K+REE + L+L DI MP+MDG Sbjct: 3 KILIIEDEAAIRRVLTKILSEESKDYQVEEAGDGLEGINKIREEDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ A +L P++ ++ I+G + ++ +SKP L L+N V L Sbjct: 63 VEVLEAARKLKPEVPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 119 >gi|310824241|ref|YP_003956599.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397313|gb|ADO74772.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1126 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD +R +++ L + GY ++ + SA V+ LLLTD+VMP + Sbjct: 858 SETILVVEDDAAVRATVVEMLSELGYRILKAVDAQSALAIVQSGVHVDLLLTDVVMPGPL 917 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++AR A L PDL+V+F +G++ A+ +LSKP+ DL +V LL Sbjct: 918 RSPDMAREAKALLPDLEVLFTSGYSENAIVHGGRLDPGVHLLSKPYRREDLARKVRGLLN 977 Query: 120 IK 121 ++ Sbjct: 978 VR 979 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD+D+R + L G++V++ + A + + F +L TD+ +P M G+E Sbjct: 1009 RVLLVEDDEDIRASASELLSFLGHDVLAVESAEEARGALVADAFDVLFTDVTLPGMSGVE 1068 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LAR A L+++ +G + L VL+KP+ L L Sbjct: 1069 LAREAVRRRAGLRIIIASGHGSAVLEDGGARIAGVVVLAKPYALSQL 1115 >gi|301384090|ref|ZP_07232508.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] Length = 827 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ ++ + +R + LL+TD+ +P M+ Sbjct: 708 ETILIVDDEPTVRMLLTDALGDLGYTLIEASDSLAGLKLLRSDVHIDLLITDVGLPGGMN 767 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E+ P LK +FITG+A A D KVL+KPF + L + V L+ Sbjct: 768 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMKVLTKPFAIDVLASRVQELM 825 >gi|206891001|ref|YP_002247975.1| acetoacetate metabolism regulatory protein AtoC [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742939|gb|ACI21996.1| acetoacetate metabolism regulatory protein AtoC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 455 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI++ EDD MR + L GYE SC++GA A + E F + + D+ +P +D Sbjct: 1 MKEKIIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L + + P V+ IT FA V + ++KPF +L+ + R L Sbjct: 61 GLTLLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKF 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|327478980|gb|AEA82290.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 851 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + +L+ EDD +R +I L GY+ + +G +A + +L+TD+ +P M+G Sbjct: 730 ETVLVVEDDPAVRLLVIDVLQMLGYQTLEAADGNAAIRILESATAVDMLVTDVGLPGMNG 789 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + P L V+F+TG+A A +PD P ++SKPF+L L V+ +L Sbjct: 790 RQLADVARQQYPGLPVLFMTGYARQAASPDFLEP-GMDMISKPFNLDALAKRVSDML 845 >gi|115371906|ref|ZP_01459219.1| two component sensor kinase/response regulator hybrid [Stigmatella aurantiaca DW4/3-1] gi|115371141|gb|EAU70063.1| two component sensor kinase/response regulator hybrid [Stigmatella aurantiaca DW4/3-1] Length = 1052 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD +R +++ L + GY ++ + SA V+ LLLTD+VMP + Sbjct: 784 SETILVVEDDAAVRATVVEMLSELGYRILKAVDAQSALAIVQSGVHVDLLLTDVVMPGPL 843 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++AR A L PDL+V+F +G++ A+ +LSKP+ DL +V LL Sbjct: 844 RSPDMAREAKALLPDLEVLFTSGYSENAIVHGGRLDPGVHLLSKPYRREDLARKVRGLLN 903 Query: 120 IK 121 ++ Sbjct: 904 VR 905 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD+D+R + L G++V++ + A + + F +L TD+ +P M G+E Sbjct: 935 RVLLVEDDEDIRASASELLSFLGHDVLAVESAEEARGALVADAFDVLFTDVTLPGMSGVE 994 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LAR A L+++ +G + L VL+KP+ L L Sbjct: 995 LAREAVRRRAGLRIIIASGHGSAVLEDGGARIAGVVVLAKPYALSQL 1041 >gi|323702939|ref|ZP_08114596.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323532070|gb|EGB21952.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 451 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 1 MNQKILLAEDDDD-MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+QK++L DD++ +R+FL L Y V + NG DK++ +L+TDI MPE+ Sbjct: 1 MSQKLVLVVDDEESVRQFLYDVLTDENYRVETAVNGEECLDKIKRLKPDVLVTDIRMPEL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DGI L R E ++ V+ +T F + + + KPF+L +N V R Sbjct: 61 DGITLLERIKEWQLNMPVILMTAFGTTDVAIQAMKLGAFDYIVKPFNLEHFLNLVRR 117 >gi|332827589|gb|EGK00335.1| hypothetical protein HMPREF9455_03474 [Dysgonomonas gadei ATCC BAA-286] Length = 227 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 61/114 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ + F++K L + GY VV NG A + E+ +SL+L DI++P++DGIE Sbjct: 2 EILLIEDNHRISEFVVKGLEETGYSVVLAENGVDARSLISEKEWSLILLDIMLPDIDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + + ++ I+ + L+KPF LR+L+ +N L Sbjct: 62 LLQYTRYKKINTPILVISALGDAEDKIRALDCGADDYLTKPFLLRELIAHINAL 115 >gi|268609739|ref|ZP_06143466.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 48/79 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L GYE V C N AYD++ F L+++DI+MP++DG E Sbjct: 3 RILVVEDDKELNATVCKYLCLNGYEAVGCLNAVDAYDEMYGASFDLIISDIMMPKIDGFE 62 Query: 64 LARRATELDPDLKVMFITG 82 A L+ D+ ++F+T Sbjct: 63 FAETVRGLNKDIPILFMTA 81 >gi|149193742|ref|ZP_01870840.1| signal-transduction regulatory protein [Caminibacter mediatlanticus TB-2] gi|149135695|gb|EDM24173.1| signal-transduction regulatory protein [Caminibacter mediatlanticus TB-2] Length = 371 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+ + EDD +MR+ L AL G+E+V N A K+ ++ L++TDI MP+MDGIE Sbjct: 2 KVAIVEDDINMRKSLSLALKSYGFEIVEFRNATDALKKL-DDSIDLIITDITMPKMDGIE 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + EL+ +V+ ITG A + + L+KPF + DL+ + R Sbjct: 61 FVK---ELNGKYEVIMITGNATLNRAIECIRLGVKDFLTKPFEIEDLIAAIKR 110 >gi|163847015|ref|YP_001635059.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524838|ref|YP_002569309.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668304|gb|ABY34670.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448717|gb|ACM52983.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 796 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD+ R L L +AG++V C + A A PF ++LTD+VMPE+DGI Sbjct: 664 RMLVIDDDEAAARTLTALLEQAGHQVTYCAHSAEAVAIYTSNPFDIVLTDVVMPELDGIS 723 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEV 114 L DP ++ TG + PD A VL KPF +L+ V Sbjct: 724 LLNVLRTYDPTASIILFTG----QIEPDQVAAMAASGAYAVLRKPFSAEELMTTV 774 >gi|330964092|gb|EGH64352.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 695 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEPAVRLLIAELLEDLGYAVLQAERGADALVVLQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A E+ PDLKV+F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAAREVRPDLKVLFVTGYAENAALAHDTLEP-GMYVLPKPFAIAELIGRVTELL 692 >gi|319650906|ref|ZP_08005042.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397399|gb|EFV78101.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 124 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 63/122 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + L K GY+ NG A D V + L+L D+ +P MD Sbjct: 1 MKGKILIVDDQFGIRILLNEVLQKEGYDTYQAANGVQALDIVSKHSPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D D++V+ +T + + + ++ +KPF + D+ V + L + Sbjct: 61 GIEILKRMRVVDKDIRVIIMTAYGELDMIQEAKDLGALTHFAKPFDIDDIRAAVKKYLPV 120 Query: 121 KN 122 N Sbjct: 121 PN 122 >gi|291278578|ref|YP_003495413.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290753280|dbj|BAI79657.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 122 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ +D++ R + L GYEV + G +K ++ F +++TD+ MP+MDG Sbjct: 4 NYKILVVDDEEHTRLGYAEVLKLDGYEVETAETGLEGLEKAKQSDFDVIVTDLRMPQMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + E + D++V+ IT F S L+KP +DL + + +L Sbjct: 64 LTFIEKLREFNKDVRVVIITAFGTYKSYQKSKQLGVITYLNKPVRAKDLKDAITDVL 120 >gi|158523282|ref|YP_001531152.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512108|gb|ABW69075.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 962 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + IL+ ED+ + + + L GY V++ A A E LL+TD++MPEM Sbjct: 842 GETILVVEDEAAILKLTQRVLSGLGYTVLTAETPAQALKLAMEHSDRIDLLITDVIMPEM 901 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA R L PDLK+++++G+ A + + KPF +DL +V +L Sbjct: 902 NGRDLADRLNALQPDLKILYMSGYTADVIAHRGILEPGVHFIQKPFSNQDLAKKVKAVL 960 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D ++ R L + L G+ V NGA A + + L+++DI+MP MDG +L Sbjct: 24 ILIVDDREENRYLLERLLQGNGHTVRQAANGAEAMEILTAGGIDLVISDILMPVMDGFQL 83 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNA----PKNAKVLSKPFHLRDLVNEVNRLLTI 120 R+ + D L + + A P A + + KP + L++ +N ++ + Sbjct: 84 CRK-VKTDETLHAIPFIVYTATYTGPQDEAFALKIGADRFIQKPCEVDVLLSAINEVMAV 142 >gi|328913791|gb|AEB65387.1| stage 0 sporulation protein F [Bacillus amyloliquefaciens LL3] Length = 125 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 2 MNEKILIVDDQYGIRILLNEVFHKEGYQTFQAANGIQALDIVTKERPDLVLLDMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFI-TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIE+ +R +D ++V+ I T + + + +S +KPF + ++ + V + L Sbjct: 62 GIEILKRMKMIDESIRVIIIMTAYGELDMIKESKELGALTHFAKPFDIDEIRDAVKKYLP 121 Query: 120 IKN 122 +K+ Sbjct: 122 LKS 124 >gi|229550945|ref|ZP_04439670.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315770|gb|EEN81743.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 258 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + L + GY V N +AYD ++ E F L+L+DI+MP++DG + Sbjct: 37 KILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGYQ 96 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ DP + ++FIT +A + KP + +L+ + LL Sbjct: 97 FAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALL 151 >gi|260466681|ref|ZP_05812868.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] gi|259029544|gb|EEW30833.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] Length = 126 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R +AL +AG+ + +GA +R + L+++DI MPEMDG Sbjct: 6 KLLIVEDDESVRTLAARALERAGHTIDIAADGAQGLSLIRAANGGYDLVVSDIRMPEMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+A A L P +K++ +TG+A + V+ KPF L ++ + V R L Sbjct: 66 IEMAIAAAALFPAMKILLMTGYADQRERAEELNGIILDVVQKPFTLAEIRSRVERAL 122 >gi|188579584|ref|YP_001923029.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|179343082|gb|ACB78494.1| response regulator receiver protein [Methylobacterium populi BJ001] Length = 203 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL+ ED+ D+ RF + LG+ G+ V NG A V EP F + +D+VMP M G Sbjct: 82 RILVVEDNLDVGRFCTQILGELGHVTVWAKNGEEALAMVEREPDRFDAVFSDVVMPGMGG 141 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 + LARR L PDL ++ +G++ V Sbjct: 142 VALARRLRALVPDLPIILTSGYSDV 166 >gi|209883912|ref|YP_002287769.1| response regulator receiver protein [Oligotropha carboxidovorans OM5] gi|209872108|gb|ACI91904.1| response regulator receiver protein [Oligotropha carboxidovorans OM5] Length = 125 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 KIL+ +D++ MR + +A+ G+E+ + +GA A D V F LLLTDI MP MDG Sbjct: 3 KILIVDDEESMRLLVARAITMDGHEIATAQDGAEALDLVVRANGAFDLLLTDIKMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I L+ P L ++ +TGFA V++KPF + D+ V L Sbjct: 63 IALSLAVARDYPRLTILLMTGFADQRERASGLEAIVHDVVTKPFAIADIRTAVAEAL 119 >gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 511 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D+ L L AGYE V +G A + V +EPF L++ DI MP MDG+E Sbjct: 5 KILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAQEPFDLIMLDIKMPRMDGLE 64 Query: 64 -LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L+R + P V+ +T + + D+ +SKPF D++ +V R + I Sbjct: 65 VLSRLKGDETP---VVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAIGI 119 >gi|94265875|ref|ZP_01289604.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453570|gb|EAT03969.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 329 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59 + IL+ ED+ +R L L ++GY+V NG A + E+ L++TD+VMP M Sbjct: 210 GEHILVVEDEASLRGLLEAILSRSGYKVTLAANGGEALLLMEEKGLQPDLVITDVVMPGM 269 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R PDLKV+F++G+ A+ + + KPF R + +V +L Sbjct: 270 SGSVLTERLRRKQPDLKVLFMSGYTDDAIVHHGVLNQGTPFIQKPFTRRAMAEKVRAVL 328 >gi|213968863|ref|ZP_03397004.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|302059164|ref|ZP_07250705.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302135002|ref|ZP_07260992.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926466|gb|EEB60020.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 827 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ ++ + +R + LL+TD+ +P M+ Sbjct: 708 ETILIVDDEPTVRMLLTDALGDLGYTLIEASDSLAGLKLLRSDVHIDLLITDVGLPGGMN 767 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E+ P LK +FITG+A A D KVL+KPF + L + V L+ Sbjct: 768 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMKVLTKPFAIDVLASRVQELM 825 >gi|163793342|ref|ZP_02187317.1| response regulator receiver domain [alpha proteobacterium BAL199] gi|159181144|gb|EDP65659.1| response regulator receiver domain [alpha proteobacterium BAL199] Length = 132 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI L +DDD +R L + L +AG+EV + +NG A +RE L++ D++MP+ +G E Sbjct: 2 KISLVDDDDGLRDALQEVLQRAGHEVRAASNGIKAAQLLREWSADLVVCDMLMPDSEGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAP--KNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R PD+K + ++G + + AP +L KPF DL+ ++ L+T K Sbjct: 62 VLRSVRRNTPDMKFIMMSGASGELSQFLNQAPLLGADAILQKPFAPNDLLEMIDGLVTGK 121 Query: 122 N 122 Sbjct: 122 T 122 >gi|39936994|ref|NP_949270.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39650851|emb|CAE29374.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 1021 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 5/113 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLA+D+ DMR ++ + LG A YEV + +G +A + V++ L+L+D++MP +DG+ L Sbjct: 645 ILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLGL 703 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +A DP DL V+F++ A + LSKPF R+L+ V Sbjct: 704 L-KALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRV 755 >gi|320323162|gb|EFW79251.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 695 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R+ + + L GY ++ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEHAVRQLIAELLEDLGYTILQAERGADALTILQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 692 >gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205] Length = 234 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDD +R + +AL G+ V NG SA+D+++ +PF L++ D+++P ++G++ Sbjct: 12 RLLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVMLPGINGLD 71 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R+ EL V+ ++ + L D L KPF +R+LV Sbjct: 72 LCRKLIELPQRPLVLMVSARDTETDRVLGLELGADD-------YLVKPFGIRELVARCRA 124 Query: 117 LL 118 LL Sbjct: 125 LL 126 >gi|28870851|ref|NP_793470.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854100|gb|AAO57165.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 827 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ ++ + +R + LL+TD+ +P M+ Sbjct: 708 ETILIVDDEPTVRMLLTDALGDLGYTLIEASDSLAGLKLLRSDVHIDLLITDVGLPGGMN 767 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E+ P LK +FITG+A A D KVL+KPF + L + V L+ Sbjct: 768 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMKVLTKPFAIDVLASRVQELM 825 >gi|307318523|ref|ZP_07597957.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306895863|gb|EFN26615.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] Length = 869 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + + E ++++D+VMPEMDG Sbjct: 752 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEIMDELDGAVDIVVSDVVMPEMDGP 811 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 812 TLLRELRKTYPDLKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLAVAVREML 867 >gi|228472850|ref|ZP_04057607.1| transcriptional regulatory protein ZraR [Capnocytophaga gingivalis ATCC 33624] gi|228275432|gb|EEK14209.1| transcriptional regulatory protein ZraR [Capnocytophaga gingivalis ATCC 33624] Length = 392 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KILL ED+ +RR L L + YEV +NG A +K+RE + L+L DI MP+ DG Sbjct: 3 KILLVEDEASIRRVLGSILSEEDKSYEVTEASNGQEAMEKIRETAYDLVLCDIKMPKKDG 62 Query: 62 IELARRATELDPDLKVMFITGFA 84 +E+ A L P L+V+ I+G Sbjct: 63 LEVLLEAKALYPTLRVVMISGHG 85 >gi|15965555|ref|NP_385908.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|307302675|ref|ZP_07582431.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] gi|15074736|emb|CAC46381.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|306903039|gb|EFN33630.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] Length = 869 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + + E ++++D+VMPEMDG Sbjct: 752 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEIMDELDGAVDIVVSDVVMPEMDGP 811 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 812 TLLRELRKTYPDLKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLAVAVREML 867 >gi|312131299|ref|YP_003998639.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311907845|gb|ADQ18286.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 219 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + LAEDD ++ L +L K G+EV N+G A ++E F LL+ D+++P++ G +L Sbjct: 3 LFLAEDDASLQEILAISLRKRGHEVTLANDGVDALLSIKEHTFDLLILDVMLPKLSGWDL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A + + ++FIT S L KPFHL +L + L Sbjct: 63 AETVRKFQSSVPILFITAKGEKEDMIQSYISGGNDFLRKPFHLEELFFRIEEL 115 >gi|83594057|ref|YP_427809.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83576971|gb|ABC23522.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 834 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +ILL ED+D +RRF L GY V + NG A D E F LL++D+VMPE+ G Sbjct: 715 RILLVEDEDAVRRFAAMVLEDGGYAVRAATNGREALDIWEAEGGRFDLLISDLVMPELGG 774 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLLT 119 + L R P L + ++G++ + D+ + A +VL+KP L+ V LLT Sbjct: 775 LALYDRLRAHTPLLPAVLMSGYSDEIPSEDAREGEGARRVLAKPVTPDALIAAVEELLT 833 >gi|323702441|ref|ZP_08114105.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532580|gb|EGB22455.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 223 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I L ED+ ++ + L L K G+EV N+G SA + E P L + DI++P++DG + Sbjct: 3 RIFLVEDELNLSQILTSYLQKEGWEVQPFNDGESALQAIAERP-HLWILDIMLPDIDGYQ 61 Query: 64 LARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR E PD+ V+FI+ A + L S+ L+KPF R+LV R+L Sbjct: 62 LLRRIKEESPDVPVIFISARDADIDRIMGLEMGSD-----DYLAKPFLPRELVIRTRRVL 116 >gi|218778427|ref|YP_002429745.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759811|gb|ACL02277.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1301 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++KILL +D+ + R + L + GY+VVSC++ A + ++P F LL+TD+ MP M Sbjct: 1180 SEKILLVDDEAPVERLEKRILERLGYDVVSCSSSLIALESFTKDPHAFDLLVTDMTMPNM 1239 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA ++ P+L V+ TGF+ + + ++KP R+L V L Sbjct: 1240 TGAQLAMEMRKIRPELPVIICTGFSNFIDEEKAASMGIQGYVTKPVVKRELAQVVRTAL 1298 >gi|84500801|ref|ZP_00999036.1| sensory box sensor histidine kianse/response regulator [Oceanicola batsensis HTCC2597] gi|84390868|gb|EAQ03286.1| sensory box sensor histidine kianse/response regulator [Oceanicola batsensis HTCC2597] Length = 757 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ +G A + + + + + +TD+VMP MDG Sbjct: 641 VLLVEDEAPVRAFASRALRLRGYTVLEAESGEEALEILEDGDLTVDIFVTDVVMPGMDGP 700 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R A E P+ V+F++G+A + N+ L KPF L +L V L Sbjct: 701 TWVREALETRPEASVIFVSGYAEEHFGDAQSKIPNSVFLPKPFSLSELTRTVQGL 755 >gi|21673366|ref|NP_661431.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] gi|21646462|gb|AAM71773.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 710 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 4/122 (3%) Query: 2 NQKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPE 58 +Q +L DD++ +++K AL K GY V+S + A + V + LLL D+VMPE Sbjct: 575 DQLTILVIDDNEAILYIVKTALEKRGYRVLSTTSANEAINIVANSGKKIDLLLADVVMPE 634 Query: 59 MDGIELARRATELDPDLKVMFITGF-AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M+G EL+R+ + P LK +F++GF + L + + +SKPF L + + + Sbjct: 635 MNGKELSRKLRAISPHLKTIFMSGFPQEINLFDEEDTEHERYFISKPFKLAEFTATIKAI 694 Query: 118 LT 119 LT Sbjct: 695 LT 696 >gi|253700190|ref|YP_003021379.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775040|gb|ACT17621.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1047 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ ILLAEDD ++R+ ++ L + GYEV+ +G +K + E +++L D++MP+ Sbjct: 927 SETILLAEDDAEVRKLVVSILCQYGYEVIQAVDGQDVVEKFADNREKVAMILMDMIMPKK 986 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E + L P +KVM+ +G+ A + + + +++ KP +L+ ++ +L Sbjct: 987 NGKEAYEEISLLQPGVKVMYSSGYTADFIQNRGVSEEGIELVMKPVQPMELLRKIREML 1045 >gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ MR L+ L K GYE V+ +NG A ++++EE F L+L D++MPE+DG+ Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E ++ ++ +T A + + + K+ ++KPF R+L+ + L Sbjct: 67 ACMRIREF-SNVPIILLT-----ARSEELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 >gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DDD +R + L G+ V NG A +K+ EE L + DI+MP+MDG E Sbjct: 3 KILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIMMPQMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A D+ ++ +T + ++ L+KPF + +L+ + LL Sbjct: 63 FCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALL 117 >gi|77458875|ref|YP_348381.1| response regulator receiver domain-containing protein [Pseudomonas fluorescens Pf0-1] gi|77382878|gb|ABA74391.1| putative two-component system, response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 125 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ + L L GY V+ NG A++ + +P +L+TD +P + G+ Sbjct: 9 VLVVEDEPVILMVLTDYLSGQGYRVLQAENGEQAFEILASKPHLDMLITDFRLPGGISGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A A +L PDLKV+FI+G+ S + A +L KPF L L ++ LL Sbjct: 69 QIAEPAVKLRPDLKVIFISGYPQEIRETGSPITRRAPILEKPFDLDVLQEKIQELL 124 >gi|218779810|ref|YP_002431128.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218761194|gb|ACL03660.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 460 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ + L LG GYE ++ N+G A + L+LTD+ MP MDG+ Sbjct: 2 ETILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGM 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL R DPDL V+ +T + V + + + KPF L+ V + L + Sbjct: 62 ELMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAM 119 >gi|78187853|ref|YP_375896.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78167755|gb|ABB24853.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 814 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL +D+ + + + + K G+ + N+ +A + +EP F LLLTD+ MPEM G Sbjct: 691 RILFVDDEVATVKLMQEMIPKLGFSIACFNSPHNALEAYSKEPDRFDLLLTDLTMPEMTG 750 Query: 62 IELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IELAR +L+P + V+ +TG+ + L N K L KP +L +N +++ Sbjct: 751 IELARNIHKLNPSIPVILLTGYGKDIELTSPLNRYGITKFLKKPVQRSELGAAINEVIS 809 >gi|259419178|ref|ZP_05743095.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259345400|gb|EEW57254.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 825 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ ED+D R L K LG G++V+S + GA+ + +R E F L+++DI MP++DG+ Sbjct: 592 RRLLVIEDNDINRLLLEKMLGDLGHDVISADGGAAGVEMIRAERFDLVISDISMPDVDGM 651 Query: 63 ELARRA-TE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ RR TE L D+ ++ +T AA + A+VL+KP L V+R Sbjct: 652 EVLRRVRTEGLADDIDIVALTAHAARDDHERILDAGFAEVLTKPIDRAALAEMVSR 707 >gi|163846956|ref|YP_001635000.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|163668245|gb|ABY34611.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] Length = 797 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ +D++ +R L + LG+ G++ + + +A + +PF L++TD+ MP+ G Sbjct: 675 QRVLVVDDEETIRHMLQRLLGELGHQTTTVGDVDAAMKALATQPFDLVITDLRMPQKSGF 734 Query: 63 ELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +L+ P L +++FI+G L P+ K+LSKPF + L + L Sbjct: 735 DLSEAIRRTYPHLAERIIFISGDTLSTLKPEQKEQLRGKLLSKPFSIPQLAELLRNL 791 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%) Query: 3 QKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D + + R L L + GY G ++R L+L D+ +P+M+G Sbjct: 2 EEILVVDDSEHVGRMLANTVLPELGYRAAIALTGQGGLARLRAHQPDLILLDLQLPDMNG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++ R T+ D+ V+ +T + + ++ L KPF Sbjct: 62 LDFLRILTQEGIDIPVILMTAHGSEMIAVEAFRLGARNYLIKPF 105 >gi|283852143|ref|ZP_06369417.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] gi|283572533|gb|EFC20519.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] Length = 449 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 63/115 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R L+ L +AG+ + +G A + EEPF L+LTD+ MP MDG+E Sbjct: 5 RILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMPGMDGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L P+++V+ +TG AAV + ++KP H+ +++ + + L Sbjct: 65 LLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKAL 119 >gi|281420578|ref|ZP_06251577.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella copri DSM 18205] gi|281405351|gb|EFB36031.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella copri DSM 18205] Length = 1349 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+DMR+F +KA + Y V + +NG A K+ + P SL+++D +MPEMDG E Sbjct: 1102 MLIVDDDEDMRQF-VKAHFEKMYTVYTADNGKDALRKLEKHPVSLIISDWMMPEMDGPEF 1160 Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR E L + +T A +S + KPF ++ L V +LL ++ Sbjct: 1161 CRRVRENSEYSHLPFVMLTAKTDDAAKTESMNCGADVYIEKPFSMKYLEASVRQLLEMR 1219 >gi|283851575|ref|ZP_06368855.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283573109|gb|EFC21089.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 651 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 59/105 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL +D++D+RRFL L GY V + NG A E S++LTDI MP MD Sbjct: 1 MSETLLLVDDEEDIRRFLGLFLADLGYVVHAAANGEEALAMFDEVNPSIVLTDIKMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G+EL +R PD +V+ I+G + L + + A ++KP Sbjct: 61 GLELLKRIKARSPDTEVVMISGHGDMDLAINCLQYEAADFVTKPI 105 >gi|146280711|ref|YP_001170864.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145568916|gb|ABP78022.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 799 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + +L+ EDD +R +I L GY+ + +G +A + +L+TD+ +P M+G Sbjct: 678 ETVLVVEDDPAVRLLVIDVLQMLGYQTLEAADGNAAIRILESATAVDMLVTDVGLPGMNG 737 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + P L V+F+TG+A A +PD P ++SKPF+L L V+ +L Sbjct: 738 RQLADVARQQYPGLPVLFMTGYARQAASPDFLEP-GMDMISKPFNLDALAKRVSDML 793 >gi|189425518|ref|YP_001952695.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ] gi|189421777|gb|ACD96175.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ] Length = 581 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 64/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ IL+ +DDD +RR ++ L G+EV NG K E SL+LTD++MPE+DG Sbjct: 6 SRSILIIDDDDALRRSIVGYLEDTGFEVHQARNGYEGIRKFEELLPSLVLTDLMMPELDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + + PD ++ I+G +V ++ ++KP H ++ EV +T + Sbjct: 66 LGVVNAIRQHSPDTPIVVISGNGSVGYAIETMRQGAWDYITKPIHDFSVLEEVISTVTAR 125 Query: 122 N 122 + Sbjct: 126 S 126 >gi|303248592|ref|ZP_07334848.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio fructosovorans JJ] gi|302490033|gb|EFL49955.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio fructosovorans JJ] Length = 449 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ R L+ L KAG+ + +G A + EPF L+LTD+ MP MDG+E Sbjct: 5 RVLVVDDEPIARENLVHILIKAGHRASAAGDGNEALILLAGEPFDLVLTDLRMPGMDGME 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L P+ +V+ +TG AAV + +SKP H+ +++ +V + L Sbjct: 65 LLAAIKRRSPETEVIVVTGHAAVETAVTAMRLGAFTYVSKPIHVEEVLAQVGKAL 119 >gi|304316235|ref|YP_003851380.1| Fis family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777737|gb|ADL68296.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 453 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+A+D+ +MR L KAL GY + NGA A +K + L++ DI MPE++GI Sbjct: 2 RHILVADDEKNMRWALKKALFNDGYVIDEAENGAVALNKFESSIYDLIILDIKMPEVNGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ + E D D+ V+ IT + + + + KPF + +L + + L I N Sbjct: 62 DVLKTIREKDKDIPVIVITAYGEIDTAIQAIKLGAVDYIQKPFDINELKLTIGKALEITN 121 >gi|330989648|gb|EGH87751.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 694 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q ILL EDDD +R + L + GY V +G A + E LLTD+ +P M+G Sbjct: 569 QVILLVEDDDSVRLINQEVLEELGYRVHVARDGEEALRVFNDLEKIDFLLTDVGLPGMNG 628 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +L P L V+F+TG+A AL ++L+KPF L L V +L Sbjct: 629 RQLAEILQQLSPRLPVLFLTGYAEGALTRADFLGPYMQLLTKPFTLESLAIRVASML 685 >gi|302186257|ref|ZP_07262930.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 951 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 832 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 891 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L+++ Sbjct: 892 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMSV 951 >gi|71735028|ref|YP_273217.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555581|gb|AAZ34792.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 694 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q ILL EDDD +R + L + GY V +G A + E LLTD+ +P M+G Sbjct: 569 QVILLVEDDDSVRLINQEVLEELGYRVHVARDGEEALRVFNDLEKIDFLLTDVGLPGMNG 628 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +L P L V+F+TG+A AL ++L+KPF L L V +L Sbjct: 629 RQLAEILQQLSPRLPVLFLTGYAEGALTRADFLGPYMQLLTKPFTLESLAIRVASML 685 >gi|300771736|ref|ZP_07081610.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761402|gb|EFK58224.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 226 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 64/118 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD + + + +A+ + G++ + +G S + FSL++TDI++P++DG++L Sbjct: 3 ILIIEDDLRVAQLIERAVREQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGLDL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +L PDL ++ +T + L KPF +R+L+ + LL K+ Sbjct: 63 CKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120 >gi|218778025|ref|YP_002429343.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218759409|gb|ACL01875.1| Response regulator receiver domain protein (CheY-like) [Desulfatibacillum alkenivorans AK-01] Length = 125 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R+ L K L AGY V +GA A D EP +++TDI+MP GI+ Sbjct: 3 RILVIDDDSQIRKMLRKMLATAGYAVAEARDGAQALDIQAREPADMIITDIIMPVKGGID 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL---SKPFHLRDLVNEVNRLL 118 + TE P +K++ ++G + P+ V+ +KP +++ V LL Sbjct: 63 TIQEFTEKYPGVKIIAMSGGGFLGAEDHLTIPQRMGVVHTFAKPLEREKILSAVKDLL 120 >gi|330985065|gb|EGH83168.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 695 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R+ + + L GY ++ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEPAVRQLIAELLEDLGYTILQAERGADALTILQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 692 >gi|307726425|ref|YP_003909638.1| histidine kinase [Burkholderia sp. CCGE1003] gi|307586950|gb|ADN60347.1| histidine kinase [Burkholderia sp. CCGE1003] Length = 552 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 2/112 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ EDD ++R L+++L GY V +G + +++ ++ LL+ D MP M+GI Sbjct: 437 KRVLVIEDDSEVRAMLVESLRMLGYNVTEAADGRAGLNRLADDNPDLLMVDFAMPGMNGI 496 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ A + DL V+ TG+A V ++ S + VL KPF L DL + Sbjct: 497 DVIAEARRIRSDLPVILATGYADVDISGLS--VERCTVLRKPFQLDDLARSI 546 >gi|146278410|ref|YP_001168569.1| integral membrane sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145556651|gb|ABP71264.1| integral membrane sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 766 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL GY V+ N A + E+P + +TD+VMP MDG Sbjct: 650 VLLVEDEAPVRAFASRALRMRGYTVIEAENAEDAL-RALEDPGLEVDVFVTDVVMPGMDG 708 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R+A P+++V+F++G+A L N+ L KPF L DL V Sbjct: 709 PTWVRKALIERPNVRVIFVSGYAEDCLAESQARIPNSVFLPKPFSLNDLTATVQ 762 >gi|330943104|gb|EGH45531.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 312 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 + +L+ EDD +R + + LG+ GY + + A + + LL++D+ +P M+ Sbjct: 193 GETVLIVEDDPAVRTLVSEVLGELGYTFIEAGEASDAVPILESGQRIDLLISDVGLPGMN 252 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 253 GRQLAEIARQLRPELKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 310 >gi|148264080|ref|YP_001230786.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146397580|gb|ABQ26213.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 1021 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + IL+ ED++ +R ++ L +GY V+ + ++A + + +LL++D++MPEM Sbjct: 887 RTILVVEDNEMVRTMTVELLESSGYRVLVADRPSAAVELMNRYGNSVALLVSDVIMPEMS 946 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G EL E PDLKV++I+G+ + L KPF L+ EV R+ Sbjct: 947 GQELHENLLETFPDLKVLYISGYTNELFVHRGMLEEGVNFLQKPFTTEKLLKEVQRI 1003 >gi|229544406|ref|ZP_04433464.1| response regulator receiver protein [Bacillus coagulans 36D1] gi|229324891|gb|EEN90568.1| response regulator receiver protein [Bacillus coagulans 36D1] Length = 120 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +KIL+ +D MR + L K GY+VV+ +GA A +K +E L+ DI MPE+ Sbjct: 1 MAKKILIVDDAAFMRMMIKDILTKNGYDVVAEAGDGAQAIEKYKEHRPDLVTMDITMPEV 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + ++DPD KV+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGISALKEIKKIDPDAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIQKTL 119 >gi|254443264|ref|ZP_05056740.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198257572|gb|EDY81880.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 900 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 9/123 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 IL+AED + +R L LG++GY +V +G A +K R E LLLTD +MP G+ Sbjct: 782 ILVAEDQEQVREILELGLGQSGYNLVIAKDGLEAIEKGRTYEGDIDLLLTDSIMPRASGV 841 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 ++ + L P++KV+ ++G +S K+ K+ + KPF +R L+ ++ L+ Sbjct: 842 KVIKEMQSLYPNIKVILVSGLP----QQESAECKSLKIDAYVDKPFSIRKLLELIHSLVG 897 Query: 120 IKN 122 + N Sbjct: 898 VDN 900 >gi|99081069|ref|YP_613223.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99037349|gb|ABF63961.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 769 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V+ + A D + + S+ +TD++MP MDG Sbjct: 653 VLLVEDEAPVRAFASRALRMRGYTVLEAESAEEALDTLEDPNLSVDVFVTDVIMPGMDGP 712 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A + P KV+F++G++ A N+ L+KPF L L V L Sbjct: 713 TWVREALKTRPGTKVVFVSGYSEGAFGDAEPDVPNSVFLAKPFSLSQLTETVQSQL 768 >gi|219848904|ref|YP_002463337.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543163|gb|ACL24901.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 801 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q++L+ +D++ +RR L + L + G+EV + + +A +++ P+ +++TD+ MP+ G Sbjct: 672 SQRVLVVDDEESVRRMLDRLLKELGHEVTTVGDVDTALNELALHPYDIVITDVRMPQKSG 731 Query: 62 IELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EL ++ P L +++FI+G +L P ++LSKPF + L + L Sbjct: 732 FELKDAISQTHPHLAERIIFISGDTLNSLKPQQKEQLQDRLLSKPFSILQLAELLRNL 789 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Query: 3 QKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D + + R L + L + GY G S D++R L+L D+ +P+M+G Sbjct: 2 EEILVIDDSEQVGRMLASSVLPELGYRATIALTGKSGLDRLRARQPDLILLDLQLPDMNG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++ R T+ D+ V+ +T + + ++ L KPF Sbjct: 62 LDFLRILTQEGIDVPVILMTAHGSEMIAVEAFRLGARNYLIKPF 105 >gi|288960298|ref|YP_003450638.1| hypothetical protein AZL_a05630 [Azospirillum sp. B510] gi|288912606|dbj|BAI74094.1| hypothetical protein AZL_a05630 [Azospirillum sp. B510] Length = 451 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +D+ +R +AL AG+EV +C+ A V + L+TD+ MP+MDG+ L Sbjct: 12 VLFVDDERAVRLAGQQALELAGFEVTACDGAERALRHVARDWPGCLVTDVRMPQMDGLAL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R E+DPDL V+ ITG V + ++ L KPF D + EV R Sbjct: 72 LARVREIDPDLPVILITGHGDVPMAVEAMRNGAYDFLEKPFP-SDRLTEVAR 122 >gi|257487141|ref|ZP_05641182.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009239|gb|EGH89295.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 698 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R+ + + L GY ++ GA A ++ + LL+TD+ +P M Sbjct: 577 DETILVVDDEPAVRQLIAELLEDLGYTILQAERGADALTILQSKAAIDLLITDVGLPGGM 636 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 637 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 695 >gi|218531282|ref|YP_002422098.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523585|gb|ACK84170.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1065 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ ED+ +R +++ L GY + +G S +R E LL+TD+ +P ++G Sbjct: 947 ETVLVVEDEPVVRDLIVEVLHDLGYRALEAQDGPSGLAVLRSRERIDLLVTDVGLPGLNG 1006 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +A E +LKV+FITG+A A+ + + ++++KPF + L + ++ Sbjct: 1007 RQLADQAREGRRELKVLFITGYAENAMFGNGHLEPGMQMMTKPFPVEALATRIREMI 1063 >gi|320330383|gb|EFW86363.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 694 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q ILL EDDD +R + L + GY V +G A + E LLTD+ +P M+G Sbjct: 569 QVILLVEDDDSVRLINQEVLEELGYRVHVARDGEEALRVFNDLEKIDFLLTDVGLPGMNG 628 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +L P L V+F+TG+A AL ++L+KPF L L V +L Sbjct: 629 RQLAEILQQLSPRLPVLFLTGYAEGALTRADFLGPYMQLLTKPFTLESLAIRVASML 685 >gi|224372193|ref|YP_002606565.1| two component transcriptional regulator, winged helix family [Nautilia profundicola AmH] gi|223589103|gb|ACM92839.1| two component transcriptional regulator, winged helix family [Nautilia profundicola AmH] Length = 226 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD + R L K L GYEV +G A++ + + + L DI +P++DGI+ Sbjct: 2 KILLVEDDKQLGRVLKKTLEAKGYEVHHIEDGEDAFNDILINEYDVYLLDINLPKIDGIK 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS---NAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + +P ++ IT A + + N + + KPFH +L+ +N L + Sbjct: 62 LIKLIRHKNPKAIIIMITASAQIEDMEKAYGENHDGCDEYIKKPFHSEELLLRINHWLKV 121 Query: 121 KN 122 KN Sbjct: 122 KN 123 >gi|197118607|ref|YP_002139034.1| PAS/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197087967|gb|ACH39238.1| sensor histidine kinase response regulator, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 796 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL+ EDD +R + L K GY V+ A + L+LTD++MPEM+G+ Sbjct: 679 ILVVEDDPMLRTMATQMLEKIGYRVIQAEGPQVALSICADLTTFIDLVLTDVIMPEMNGL 738 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E+AR L PD KV+F+TG+++ + + KPF++ L Sbjct: 739 EMARGIAALRPDTKVLFMTGYSSDVIASHGIIQPGLHYVEKPFNMEGL 786 >gi|302342658|ref|YP_003807187.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301639271|gb|ADK84593.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 288 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 65/117 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+D +R L + L G++VV +G A RE+PF L+L+D+ MP +DG++ Sbjct: 17 RILVADDEDALRELLKRFLETKGHQVVLAQDGREALKLFREQPFDLVLSDVRMPGLDGLQ 76 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L +++P V+ I+G+ + + L+KP + L V++ L++ Sbjct: 77 LLAAVKDINPRTPVVLISGYGDIETVVTALKAGAENFLAKPIRIDMLRRVVSQSLSL 133 >gi|300813866|ref|ZP_07094171.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512053|gb|EFK39248.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ D+ + + K+L ++GYEV NNG A + + E + L++ D+ +PE+DG+E Sbjct: 2 RILIVEDEKDLCQMIAKSLKESGYEVDIANNGNEAMELLDVENYDLIVLDLNLPEIDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + D K++ ++ + + + LSKPFHL +L + R LT +N Sbjct: 62 ILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARI-RSLTRRN 119 >gi|330882623|gb|EGH16772.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 694 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q ILL EDDD +R + L + GY V +G A + E LLTD+ +P M+G Sbjct: 569 QVILLVEDDDSVRLINQEVLEELGYRVHVARDGEEALRVFNDLEKIDFLLTDVGLPGMNG 628 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +L P L V+F+TG+A AL ++L+KPF L L V +L Sbjct: 629 RQLAEILQQLSPRLPVLFLTGYAEGALTRADFLGPYMQLLTKPFTLESLAIRVASML 685 >gi|325921185|ref|ZP_08183051.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548327|gb|EGD19315.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 952 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEMDGI 62 +LL ED+ +R + + L +AGY V+ G++A +++R +E LL+TD+ + ++G Sbjct: 832 VLLVEDETAIRVLVSEVLTEAGYRVIETAEGSAAVERLRSQEAIDLLVTDVGLTGGLNGR 891 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A + P L V+F+TG+AA A +VL+KPF DL V +LL Sbjct: 892 QVADAGRQYRPSLPVLFVTGYAATAAVGAGQLDDGMEVLTKPFLAIDLERRVAQLL 947 >gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 228 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 1/112 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + RFL L G+E + +NG AY+++ +E F ++L D+++P MDGIE Sbjct: 6 RVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVMLPGMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + RR E+ ++ ++ +T AV + ++KPF + +L+ +N Sbjct: 66 ICRRVREI-SNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLN 116 >gi|227822197|ref|YP_002826168.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227341197|gb|ACP25415.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 861 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A D + E ++++D+VMPEMDG Sbjct: 744 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALDIMEELDGAVDIVVSDVVMPEMDGP 803 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + P+LK +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 804 TLLRELRKKYPNLKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLAVAVREML 859 >gi|215433485|gb|ACJ66708.1| response regulator [Myxococcus fulvus HW-1] Length = 255 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 61/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D++ +R L L G+ V+ NG A + ++ ++LTDI MP + G+E Sbjct: 11 RILLVDDEESLRITLAANLELEGHTVLEAANGEEALRLLEQQSVDVVLTDIRMPGLHGVE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L RR + PD+ V+ +T F A L D+ A VL KPF + ++ V R Sbjct: 71 LLRRIKQERPDMPVVLMTAFTAEELVDDALAEGAFTVLPKPFDVAHALDTVLR 123 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D + + R +++AL G + +G A +R + + + D+VMPEM G E Sbjct: 129 QVLVVDDTEQVARGMVRALSTVGLRARAVYSGEEALASLRSGEYDVCVLDLVMPEMSGPE 188 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + + + ++ ++G + A ++KP LR+LV + R+ Sbjct: 189 LVSKVRAANLSVAIIAVSGHVVPEMLRRVAAQGAVVCMTKPVPLRELVQAIARV 242 >gi|220925839|ref|YP_002501141.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950446|gb|ACL60838.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 743 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +L+ ED+ +R+F ++AL GY V+ + A+A + + P +LLLTD+VMP+++G Sbjct: 619 VLVVEDEAAVRQFAVEALSDLGYRVLDADGAAAALNLLALHPEVALLLTDVVMPDVNGRR 678 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A PDLKV+F+TG+ A+ + ++++KPF + L ++ +L Sbjct: 679 LADEALRRRPDLKVVFMTGYTRNAIVHNGMLDPGTQLITKPFTVAQLAAKLRTVL 733 >gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1415 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 5/113 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLA+D+ DMR ++ + LG A YEV + +G +A + V++ L+L+D++MP +DG+ L Sbjct: 645 ILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLGL 703 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +A DP DL V+F++ A + LSKPF R+L+ V Sbjct: 704 L-KALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRV 755 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 6/108 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL+ ED+ ++ F + L GY+ V ++G A + + F L+L+D+ MP MDG+ Sbjct: 1300 ILVVEDNAEVGEFSTQLLHDLGYQTVLASSGEQALALLGDNAKRFDLVLSDVAMPGMDGV 1359 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R + P+L V+ +G+A + + D ++L KP+ + DL Sbjct: 1360 TLGREIKKRLPELPVVLNSGYAHMLADED----HGFELLHKPYSVEDL 1403 >gi|308272187|emb|CBX28794.1| hypothetical protein N47_L13920 [uncultured Desulfobacterium sp.] Length = 525 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 66/114 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++++R+ LI+ L K G VV+ +G + ++ E L+L D+ MP ++GIE+ Sbjct: 60 VLVVDDEEEIRKILIQILEKEGLRVVTAEDGQESMQQICLEVPDLILLDVHMPGINGIEV 119 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ +D DL V+ IT +A + ++ L+KPF ++V VNR L Sbjct: 120 LKKIKGIDDDLPVVLITAYANIHQAVEAMKGGAYDYLAKPFDNNEVVWIVNRAL 173 >gi|332528272|ref|ZP_08404277.1| integral membrane sensor hybrid histidine protein kinase [Hylemonella gracilis ATCC 19624] gi|332042292|gb|EGI78613.1| integral membrane sensor hybrid histidine protein kinase [Hylemonella gracilis ATCC 19624] Length = 812 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+A+D R L LG G+EV + +G A +R+E + LLLTD +MP MDG Sbjct: 689 RRILVADDLSANRDQLTDLLGGYGFEVDTAADGQEAAQMLRDERYDLLLTDQMMPRMDGW 748 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRL 117 EL +A L PD+ V+ ++A P + P + + L KP +L+ +++RL Sbjct: 749 ELLTQARALRPDMPVVL---YSAAPPMPPMDWPADRRFDATLLKPATSGELLRQIDRL 803 >gi|261404001|ref|YP_003240242.1| response regulator receiver protein [Paenibacillus sp. Y412MC10] gi|329930191|ref|ZP_08283804.1| sporulation initiation phosphotransferase F [Paenibacillus sp. HGF5] gi|261280464|gb|ACX62435.1| response regulator receiver protein [Paenibacillus sp. Y412MC10] gi|328935213|gb|EGG31694.1| sporulation initiation phosphotransferase F [Paenibacillus sp. HGF5] Length = 130 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D + +R L++ GYE NG +A + V+ L+L D+ +P MDG+ Sbjct: 7 HKVLIVDDQNGIRILLVEVFSSEGYETFQAANGKAALEIVKMHAPDLVLLDMKIPGMDGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + +++PD+KV+ +T + + + ++ +KPF + ++ VN L Sbjct: 67 EILKHIKQMNPDIKVIMMTAYGELDMIKEATDLGALMHFTKPFDIDEMRQAVNMQL 122 >gi|313676806|ref|YP_004054802.1| two component, sigma54 specific, transcriptional regulator, fis family [Marivirga tractuosa DSM 4126] gi|312943504|gb|ADR22694.1| two component, sigma54 specific, transcriptional regulator, Fis family [Marivirga tractuosa DSM 4126] Length = 440 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ +L+ +D ++ L + L K GY+ + A + ++ LLLTD+ MP +DG Sbjct: 3 NKTVLIVDDSYEVLEVLYRQLSKLGYQTFKAVDVTDAIEILKNSEIDLLLTDLRMPGIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +EL + +E PD+ V+ ITGF +V+ ++ + L KPF + +L + V + Sbjct: 63 MELIKYTSEHFPDIPVLVITGFPSVSGAVEAVKSGAMEYLIKPFTIEELKSAVEK 117 >gi|322419782|ref|YP_004199005.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126169|gb|ADW13729.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 660 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 N+ +L+AEDD + + L + GY ++ NG A K +E P L+L DI+MP M+ Sbjct: 540 NETVLIAEDDLHVLDLVSSILQQYGYSIIPAANGLEAVQKFKENPQIKLVLMDIIMPVMN 599 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E A EL D +++F +G+ A + S+ + A+++ KP L+ ++ +L Sbjct: 600 GKEAAECIRELRHDARILFTSGYTADIIRSRSDLDEGAELVMKPVKPPVLLQKIREML 657 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 3 QKILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +KIL+ EDDD + + YE+ A D++R + ++LTD ++P+ Sbjct: 8 KKILVVEDDDAHAELIRRGFSDFSHQYELTVAGTVKEALDRIRSSAYDIVLTDYLLPDGR 67 Query: 61 GIELARRATELDP 73 G EL ++ + P Sbjct: 68 GGELVAQSAHIAP 80 >gi|294054418|ref|YP_003548076.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613751|gb|ADE53906.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 780 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AEDD + L K L ++G E V NG A D+V+ E FS++ D+ MPE+DGIE Sbjct: 656 KVLIAEDDPTNYKLLDKLLARSGIENVWARNGVEAIDRVKNEDFSMIFMDLQMPELDGIE 715 Query: 64 LARRATELDPDLKVM-FITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R EL + + +I A AL +A NA + ++KP + N + R L Sbjct: 716 ATLRIRELCKEGRPQPYIAALTANALGDSRDACFNAGMEDFITKPVARETIRNALVRYL 774 >gi|317051506|ref|YP_004112622.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] gi|316946590|gb|ADU66066.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] Length = 487 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 58/103 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D+D MR L + L +AGYEV++ +G + K++ ++TD+ MP MDG+ Sbjct: 6 KTVLVVDDEDQMRLALRETLTRAGYEVITAFDGNNGLSKLQNNSIDAVITDLRMPVMDGM 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E ++A + P L ++ +T +A V D+ + KPF Sbjct: 66 EFLQKALQEKPGLPIVLMTAYATVNTAVDAMKSGAFDYIMKPF 108 >gi|158423045|ref|YP_001524337.1| PAS/PAC sensor hybrid histidine kinase [Azorhizobium caulinodans ORS 571] gi|158329934|dbj|BAF87419.1| PAS/PAC sensor hybrid histidine kinase [Azorhizobium caulinodans ORS 571] Length = 845 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 IL+ ED+ +R + ++LG GYE + + G ++ ++P LLLTD+ +P ++G + Sbjct: 729 ILIVEDEPAVRLLVTESLGALGYETLVASTGPDGLRILQSDQPIDLLLTDVGLPGLNGRQ 788 Query: 64 LARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A P+LKV+F+TG+ L D P A V++KPF + L V L+ Sbjct: 789 LADAARVTRPNLKVLFVTGYVHDSGLYEDGLEPGMA-VVTKPFDIDKLAKRVAELI 843 >gi|39996515|ref|NP_952466.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983396|gb|AAR34789.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|307634841|gb|ADI84254.2| sensor histidine kinase response regulator, PAS and PAC domain-containing [Geobacter sulfurreducens KN400] Length = 844 Score = 64.7 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 N+ I+L EDD+ +R L GY VV+ +GA A ++ R E +L++ D++MP M Sbjct: 704 NETIMLVEDDESVRTTTADILTMFGYRVVTAGDGAEAIERYRATGEDIALVILDVIMPRM 763 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++ +++P +KV++ +G+ A + + + KP +D++ + R+L Sbjct: 764 NGRQVHDELLKINPAVKVVYTSGYTADLIENKGVLDAGIQFVPKPLLPQDILTAIRRVL 822 >gi|289628977|ref|ZP_06461931.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 422 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 Q ILL EDDD +R + L + GY V +G A + E LLTD+ +P M+ Sbjct: 296 GQVILLVEDDDSVRLINQEVLEELGYRVHVARDGEEALRVFNDLEKVDFLLTDVGLPGMN 355 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA +L P L V+F+TG+A AL ++L+KPF L L V +L Sbjct: 356 GRQLAEILQQLSPRLPVLFLTGYAEGALTRADFLGPYMQLLTKPFTLESLAIRVASML 413 >gi|227539981|ref|ZP_03970030.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227240259|gb|EEI90274.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 226 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 63/118 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD + + +A+ + G++ + +G S + FSL++TDI++P++DG++L Sbjct: 3 ILIIEDDLRVAELIERAVQEQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGLDL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +L PDL ++ +T + L KPF +R+L+ + LL K+ Sbjct: 63 CKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120 >gi|257481977|ref|ZP_05636018.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008837|gb|EGH88893.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 694 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q ILL EDDD +R + L + GY V +G A + E LLTD+ +P M+G Sbjct: 569 QVILLVEDDDSVRLINQEVLEELGYRVHVARDGEEALRVFNDLEKVDFLLTDVGLPGMNG 628 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +L P L V+F+TG+A AL ++L+KPF L L V +L Sbjct: 629 RQLAEILQQLSPRLPVLFLTGYAEGALTRADFLGPYMQLLTKPFTLESLAIRVASML 685 >gi|296120393|ref|YP_003628171.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296012733|gb|ADG65972.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1561 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + ILL ED+ +R+ L GY V+ NG A D VR +P LL+TD+VMP + Sbjct: 1440 ETILLVEDEPAVRKATRLMLELQGYRVLEAANGREALDLVRTLPDPIDLLITDVVMPGIG 1499 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G ELA + DL V++I+G++ ++ + L KPF DL+ +V Sbjct: 1500 GRELAGELRSMHADLPVVYISGYSESFGARGASLQPHEAFLQKPFTQADLLQQV 1553 >gi|226227148|ref|YP_002761254.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226090339|dbj|BAH38784.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 885 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 + ILL EDD +R+ L +AGY V + ++ +A++ + EP ++L+D+VMP++ Sbjct: 762 EHILLVEDDGAVRKATTSLLTRAGYRVTAADSAFAAWELLEAMPEPPDMVLSDVVMPQVS 821 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E A R P + V+F++G+A A + ++KPF L+ V RLL Sbjct: 822 GPEFAARVAVQYPTIPVLFMSGYADDDAVMQGIASNSLHFVAKPFSAGQLLGAVRRLL 879 >gi|330872796|gb|EGH06945.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 380 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE- 58 +++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P Sbjct: 258 VDETILVVDDEPAVRLLIAELLEDLGYAVLQAERGADALVVLQSKAAIDLLITDVGLPGG 317 Query: 59 MDGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M+G ++A A E+ PDLKV+F+TG+A AL D+ P VL KPF + +L+ V L Sbjct: 318 MNGRQVADAAREVRPDLKVLFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTEL 376 Query: 118 L 118 L Sbjct: 377 L 377 >gi|319647703|ref|ZP_08001921.1| CssR protein [Bacillus sp. BT1B_CT2] gi|317390044|gb|EFV70853.1| CssR protein [Bacillus sp. BT1B_CT2] Length = 224 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED++++ L K L G+ V S NG SA K+ + P L + DI++P++D Sbjct: 1 MSYSIYLVEDEENLNELLTKYLESEGWHVTSFLNGESARQKIGQSP-HLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G L + DP++ V+FI+ A ++ +SKPF R+L+ V +LL + Sbjct: 60 GYTLIKEIKNQDPEVPVIFISARDADIDRVLGLELGSSDYISKPFLPRELIIRVQKLLKL 119 >gi|313673497|ref|YP_004051608.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940253|gb|ADR19445.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] Length = 123 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ R + L GY V S NG A+ K++E F +++TD+ MPE+DG+ Sbjct: 7 KILIVDDEEHTRLGYAEVLKLEGYSVDSAENGREAFFKLQEMDFDVVVTDLRMPELDGMG 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R +L + K++ IT F + L+KP +DL + ++L Sbjct: 67 LIDRIRQLKNNQKIIIITAFGTFKTYKQAKDAGVTLFLNKPVRAKDLKEAITQIL 121 >gi|146296294|ref|YP_001180065.1| response regulator receiver protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409870|gb|ABP66874.1| response regulator receiver protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 120 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++IL+ +D MR L + K GYEV NG A + +E L++ DI MPEM Sbjct: 1 MSKRILIVDDAAFMRMMLKDIITKNGYEVAGEAENGLKAVELYKELKPDLVMMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ R ++DP K++ + A+ +S + KPF +V + ++L Sbjct: 61 DGIQAVREIKKIDPQAKIIMCSAMGQQAMVIESIQAGARDFIVKPFQAERIVEAIKKVL 119 >gi|71908721|ref|YP_286308.1| LuxR response regulator receiver [Dechloromonas aromatica RCB] gi|71848342|gb|AAZ47838.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas aromatica RCB] Length = 202 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60 Q I + +DD+ MR + L GY V +C + A + K R + L+ D+ MPEM Sbjct: 5 TQTIFVVDDDEAMRDSMTWLLEGEGYRV-ACFDSAENFLKARRDDMRGCLVLDVRMPEMS 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+EL + L L V+F+TG V + + + KPFH DL++ + R L + Sbjct: 64 GLELQEKLDALGSQLPVIFVTGHGDVPMAVSALQRGACDFIEKPFHNEDLLSRIQRALEL 123 Query: 121 KN 122 N Sbjct: 124 DN 125 >gi|330870610|gb|EGH05319.1| histidine kinase-response regulator hybrid protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 444 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 Q ILL EDDD +R + L + GY V +G A + E LLTD+ +P M+ Sbjct: 318 GQVILLVEDDDSVRLINQEVLEELGYRVHVARDGEEALRVFNDLEKVDFLLTDVGLPGMN 377 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA +L P L V+F+TG+A AL ++L+KPF L L V +L Sbjct: 378 GRQLAEILQQLSPRLPVLFLTGYAEGALTRADFLGPYMQLLTKPFTLESLAIRVASML 435 >gi|318040455|ref|ZP_07972411.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 239 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 59/106 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LLA+DD +R+FL L + GY V SC +G A ++R+EP LL+ D ++P++ G+E Sbjct: 5 SVLLADDDARLRQFLELELREEGYAVHSCGDGIGALTQIRQEPPDLLVLDWMLPDLSGVE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 + +R + V+ +TG AV ++ L KPF + + Sbjct: 65 VCQRLRSTGVQVPVLMLTGRDAVKDRVEALDAGADDYLVKPFSIEE 110 >gi|298242676|ref|ZP_06966483.1| multi-sensor hybrid histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555730|gb|EFH89594.1| multi-sensor hybrid histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 640 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPE 58 ++ IL+ EDD D+R + +ALG GY V+S +G ++K ++ +L+++D+V P+ Sbjct: 520 DETILVVEDDPDLRYLMEEALGDYGYTVMSARDGVEGLQLFEKYKDS-IALVISDLVTPK 578 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G EL + + +F++G+ A ++ + K L KPF L DL +V +L Sbjct: 579 MKGKELYDYIHAMSAETHFLFVSGYHANQISQNFVLDKGFVFLQKPFDLDDLAAKVREIL 638 >gi|220926309|ref|YP_002501611.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylobacterium nodulans ORS 2060] gi|219950916|gb|ACL61308.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylobacterium nodulans ORS 2060] Length = 485 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 64/118 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N I++A+DD +R L +AL +AGYEV S N A+ + V + L++TD+VMP+ + Sbjct: 3 NGHIIVADDDAAIRTVLNQALSRAGYEVRSTGNAATLWRWVAQGDGDLVITDVVMPDENA 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + PDL ++ ++ ++ + L KPF L++L V R L+ Sbjct: 63 FDLLPRIKRVRPDLPIIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELTAIVGRALS 120 >gi|138896963|ref|YP_001127416.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134268476|gb|ABO68671.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 120 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + + Y NG A + VR+ L+L D+ +P MD Sbjct: 1 MGNKILIVDDQYGIRILLNEVFQRERYVTYQAANGMQALEIVRKHHPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R ++DPD+KV+ +T + + + ++ +KPF + DL V + +++ Sbjct: 61 GIEILKRLKDIDPDIKVIIMTAYGELDMIQETKELGALMHFAKPFDIDDLRAAVKKHISV 120 >gi|34498593|ref|NP_902808.1| two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34104447|gb|AAQ60805.1| probable two-component response regulator [Chromobacterium violaceum ATCC 12472] Length = 458 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R ++ L AGY + +G SA K+ +EP L+++D M MDG +L Sbjct: 6 ILVVEDDADLREAIVDTLSLAGYPTLEAADGGSALQKLAQEPVGLIISDAQMAPMDGYDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A + P + + +T + + + A L KPF + L+ EV++ L Sbjct: 66 FEEAKKRYPGVPFILMTAYGVIERAIELLRAGAAHYLLKPFEPQSLLAEVDKHL 119 >gi|304391550|ref|ZP_07373492.1| nitrogen regulation protein [Ahrensia sp. R2A130] gi|303295779|gb|EFL90137.1| nitrogen regulation protein [Ahrensia sp. R2A130] Length = 479 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+DD +R + +AL +AGYEV +N A+ + + L++TD++MP+ + E Sbjct: 3 EILVADDDSAIRTVVSQALTRAGYEVRVTSNAATLWRWTQAGDGDLIVTDVIMPDENAFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + PDL V+ ++ + L KPF L++LV+ V R L Sbjct: 63 LLPRIKRIRPDLPVIVMSAQNTFMTAITATEKGAYDYLPKPFDLKELVSTVERAL 117 >gi|218779492|ref|YP_002430810.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760876|gb|ACL03342.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1104 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 + ILL EDD + + L GY+V++ + + A ++ EE L LTD++MP+M Sbjct: 985 GETILLVEDDAILLKMTTNMLLHLGYKVIATASPSEALRLAEISEEEIHLFLTDVIMPDM 1044 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA ++ P +K+++++G+ A+ K + KPF L+ L ++ +L Sbjct: 1045 GGRSLADAVDKIRPGIKILYMSGYTTNAIVHQGVMEKGVNFIQKPFSLQSLAQKIRTML 1103 >gi|170743990|ref|YP_001772645.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Methylobacterium sp. 4-46] gi|168198264|gb|ACA20211.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylobacterium sp. 4-46] Length = 486 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 64/118 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N I++A+DD +R L +AL +AGYEV S N A+ + V + L++TD+VMP+ + Sbjct: 3 NGHIIVADDDAAIRTVLNQALSRAGYEVRSTGNAATLWRWVAQGDGDLVITDVVMPDENA 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + PDL ++ ++ ++ + L KPF L++L V R L+ Sbjct: 63 FDLLPRIKRVRPDLPIIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELTAIVGRALS 120 >gi|91200023|emb|CAJ73065.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 1128 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + L L + GY V CNNGA A DK+++ + ++L D+ MP + G + Sbjct: 1014 KILVIEDELVIGKVLCNFLTEGGYVVEYCNNGADALDKLKQYKYDIVLCDLGMPGVSGWD 1073 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L KV ITGF A N K +++KPF L ++ + ++L Sbjct: 1074 IMNAVEMLQEKPKVGIITGFLNTADTFPDNKIKANFIINKPFDLEVVLEHIQQIL 1128 >gi|206890065|ref|YP_002248600.1| ATP-dependent protease La 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742003|gb|ACI21060.1| ATP-dependent protease La 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 667 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL+ +D+D R+ L L K YEVV+ NG A++ + ++ F ++LTDI M ++G Sbjct: 115 NSRILIVDDEDITRKNLEHVLKKENYEVVAAKNGKEAFEILDKQEFEIVLTDIKMEGLNG 174 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + + P KV+ IT +AAV ++ ++KPF + ++ +N+ Sbjct: 175 FAVLEKVKAKYPSTKVIMITAYAAVDSAVEAIKRGAFHYIAKPFKIEEVKLAINK 229 >gi|52081787|ref|YP_080578.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787173|ref|YP_093002.1| CssR [Bacillus licheniformis ATCC 14580] gi|52004998|gb|AAU24940.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349675|gb|AAU42309.1| CssR [Bacillus licheniformis ATCC 14580] Length = 224 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED++++ L K L G+ V S NG SA K+ + P L + DI++P++D Sbjct: 1 MSYSIYLVEDEENLNELLTKYLESEGWHVTSFLNGESARQKIGQSP-HLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G L + DP++ V+FI+ A ++ +SKPF R+L+ V +LL + Sbjct: 60 GYTLIKEIKNQDPEVPVIFISARDADIDRVLGLELGSSDYISKPFLPRELIIRVQKLLKL 119 >gi|119357351|ref|YP_911995.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119354700|gb|ABL65571.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 823 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCN--NGASAYDKVREEPFSLLLTDIVMPEMD 60 + ILL ED+ D+ + L GY V+S + N A + LLLTD+VMPEM+ Sbjct: 701 ETILLVEDEPDILKLCKLMLENNGYTVLSADTPNEAIRIAAKHKGGIGLLLTDVVMPEMN 760 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L+ + P+LK +F++G+ A ++ + KPF L+ L+ V+ LL Sbjct: 761 GCDLSNKLRITSPNLKTLFMSGYTADIISRHGVLDDGGDFIQKPFSLKALMESVHNLL 818 >gi|309389650|gb|ADO77530.1| response regulator receiver protein [Halanaerobium praevalens DSM 2228] Length = 231 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 60/111 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +D+ ++R L AL KAGY+V + NG ++EE ++L D+ MP MD Sbjct: 1 MKNKVLIVDDEKNIRLTLKTALKKAGYQVETAVNGEDGLSILKEEEIPVILLDMKMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 GI+ + + + KV+ ITG+ +V ++ L KPF +++ Sbjct: 61 GIQFLKEIANDNFETKVIMITGYGSVETAVETLKLGAVDYLRKPFKPEEII 111 >gi|222148810|ref|YP_002549767.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735796|gb|ACM36759.1| two component sensor kinase [Agrobacterium vitis S4] Length = 872 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +RR + L GY V +G A + + E ++++D+VMPEMDG Sbjct: 755 VLLVEDEDAVRRGGKRMLETRGYTVHEACSGVEALEIMEELEGKVDIVVSDVVMPEMDGP 814 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + + PD+K +F++G+A A N P +AK L KPF L+ L V +L Sbjct: 815 SLLKELRKTYPDMKFIFVSGYAEDAFA--RNLPADAKFGFLPKPFSLKQLAIAVREML 870 >gi|308050801|ref|YP_003914367.1| response regulator receiver protein [Ferrimonas balearica DSM 9799] gi|307632991|gb|ADN77293.1| response regulator receiver protein [Ferrimonas balearica DSM 9799] Length = 214 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 62/117 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILLAEDD ++R L +AL G +V +C++ +A D + F + + D+VMP M Sbjct: 1 MSLNILLAEDDPELRETLEEALLLEGMQVCACDSAETALDAAEAQSFDVAILDLVMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E L P + V+ T FA V D+ + L+KPF+L L V R+ Sbjct: 61 GVEAITNLRRLQPGMGVIITTAFATVDTAVDAMKKGADEFLAKPFNLAALATTVRRV 117 >gi|197120301|ref|YP_002140728.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197089661|gb|ACH40932.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 467 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+DD R F+ L GY+V +G A K+ +++TDI+MP ++G+E Sbjct: 5 KILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRVNGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + PD+ + + FA + + L KPF+L +L V R L Sbjct: 65 FIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGL 119 >gi|39933571|ref|NP_945847.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39647417|emb|CAE25938.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Rhodopseudomonas palustris CGA009] Length = 1093 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMP-EM 59 + IL+ EDD +R ++ L GY +S N A+A + F LL TD+VMP M Sbjct: 939 TETILVVEDDAMVRSYVNAQLKSLGYTTLSVGNAAAALSIGESDTAFDLLFTDVVMPGPM 998 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G++LA + P L+V++ +G++ AL + + +LSKP+ DL + R L Sbjct: 999 NGVQLAAEMIKRRPGLRVLYTSGYSENALIHNDRIDSDVLLLSKPYRRSDLARMIRRAL 1057 >gi|91976349|ref|YP_569008.1| sensor histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682805|gb|ABE39107.1| sensor histidine kinase [Rhodopseudomonas palustris BisB5] Length = 936 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EM 59 ++ ILL EDD+ +R+F I L GY ++ +G SA +V R F LL TD++MP + Sbjct: 786 SETILLVEDDELVRKFAIAQLQGLGYRTIAVCDGPSALKEVERGAAFDLLFTDVIMPGGL 845 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA + P ++V+F +G+ A+ A +LSKP+ DL V L Sbjct: 846 NGPQLAEAVARIRP-VRVLFTSGYTENAILHHGRLDPGALLLSKPYRRSDLARMVRAAL 903 >gi|301061359|ref|ZP_07202139.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] gi|300444536|gb|EFK08521.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] Length = 453 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 56/108 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D+ +R+ + +AL E NG A K+ F L+L DI M +MDG+ Sbjct: 8 KHVLVVDDESVVRKGICRALENRRIETTEAVNGKEALAKLETRAFDLVLLDIKMEDMDGV 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E+ RR DP++ V+ ITG+ ++ L KPF L+DL Sbjct: 68 EVLRRIRRNDPEISVVMITGYPTISTAVHCTKLGALDYLPKPFSLKDL 115 >gi|294083786|ref|YP_003550543.1| Response regulator containing CheY-like receiver [Candidatus Puniceispirillum marinum IMCC1322] gi|292663358|gb|ADE38459.1| Response regulator containing CheY-like receiver [Candidatus Puniceispirillum marinum IMCC1322] Length = 479 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+AEDD +R + +AL + GY V S N + + + +L+TD+ +P+ D Sbjct: 5 QKHILVAEDDKSVRLVVQQALARQGYTVHSSGNASGLWKLIEAGKGDVLITDVALPDGDA 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++L R E PDL V+ ++ + + + + L KPF LR+LV+ V R ++ Sbjct: 65 LDLLPRIKEKRPDLPVIVMSARSTLLTAVKAQQIGVFEYLPKPFELRNLVDVVARAFSV 123 >gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 231 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY++ NG A + +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E+ + R E D+ VM IT + L D ++KPF +R+L+ Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADD-------YITKPFSIRELMA 115 Query: 113 EVNRLL 118 V LL Sbjct: 116 RVKALL 121 >gi|84686866|ref|ZP_01014750.1| multisensor hybrid histidine kinase [Maritimibacter alkaliphilus HTCC2654] gi|84665063|gb|EAQ11543.1| multisensor hybrid histidine kinase [Rhodobacterales bacterium HTCC2654] Length = 800 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL GY V+ ++ SA + E+P +++TD++MP MDG Sbjct: 684 VLLVEDEAPVRAFASRALALRGYTVLEADSAESAL-ALLEDPTLKIDVVVTDVIMPGMDG 742 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +A E P +KV+F++G+A +++ N+ L KPF L +L V Sbjct: 743 PTWVAKALEDRPGVKVVFVSGYAEESVSEHQKRIPNSVFLPKPFSLSELTATV 795 >gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1143 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + FL+ LG AG+ NG A + EE F L+L D+ MPEMDG+E Sbjct: 887 ILLAEDNRINQEFLVHMLGAAGHRSRVAANGREALQALAEETFDLVLMDVQMPEMDGLET 946 Query: 65 ARRATE-----LDPDLKVMFITGFA 84 RR E DP + ++ +T +A Sbjct: 947 TRRIREHDGRLFDPAIPIIAVTAYA 971 >gi|153871532|ref|ZP_02000680.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] gi|152071998|gb|EDN69316.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] Length = 594 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 15/132 (11%) Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 MNQ K+L+ +D+ + L + L KA +EV+ NG SA +V+ ++L DI+MP Sbjct: 1 MNQEQNKVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQVKNLKPDIILLDIMMP 60 Query: 58 EMDGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDL 110 MDG E R +A E D+ V+F+T AL + K K+ ++KP + ++ Sbjct: 61 GMDGFETCRCLKANEESKDIPVIFMT-----ALESTPDKVKGFKIGAIDYITKPVQMEEV 115 Query: 111 VNEVNRLLTIKN 122 + VN LTI++ Sbjct: 116 LARVNTHLTIRH 127 >gi|326335462|ref|ZP_08201649.1| sigma-54 dependent DNA-binding response regulator CrdA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692228|gb|EGD34180.1| sigma-54 dependent DNA-binding response regulator CrdA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 390 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KILL ED+ +RR L L + Y++ NG A DK+R+E + L+L DI MP+ DG Sbjct: 3 KILLVEDEASIRRVLNNILSEEDKSYQIEEATNGQEAIDKIRKELYDLVLCDIKMPKKDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ A L P+L+++ I+G + + ++KP L L+ + LT+ Sbjct: 63 LEVLLEAKGLYPNLRIVMISGHGDLETAVQAMKMGAFDYIAKPPDLNRLLTTIRNALTV 121 >gi|289679468|ref|ZP_06500358.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 310 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M Sbjct: 190 GETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGM 249 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 250 NGRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 309 Query: 120 I 120 + Sbjct: 310 V 310 >gi|156740851|ref|YP_001430980.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] gi|156232179|gb|ABU56962.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] Length = 508 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 57/113 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD + F + L G+ V + NG A D ++ PF L+LTD+ MPEM G+ Sbjct: 13 RVLIVEDDPMVSSFCARLLHMKGFAVKTACNGREALDILQTHPFDLVLTDLQMPEMGGMA 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E DL + T +A V ++ L+KPF + +L V R Sbjct: 73 LLRELREHYADLDAIMFTAYATVDTAREALKLGAFDYLTKPFSVDELERTVRR 125 >gi|194336437|ref|YP_002018231.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194308914|gb|ACF43614.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 699 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMP 57 + ILL ED+ D+ L GY V+ + A+ D +R + LL+TD+V+P Sbjct: 578 EMILLVEDEPDILNIYKLMLENNGYTVL---DAAAPSDALRIASEYKGQIHLLITDVVLP 634 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EM+G +L+++ L P LK +F++G+ ++N + KPF + L++ +N++ Sbjct: 635 EMNGCDLSKKLESLFPKLKTLFMSGYTTDSINKQVGGELGVNFIQKPFSIDALISAINKI 694 Query: 118 LTI 120 T+ Sbjct: 695 FTL 697 >gi|291288771|ref|YP_003505587.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885931|gb|ADD69631.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 750 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59 N ILL ED+ +R L AL GY+V NG A + ++ F ++++DIVMP M Sbjct: 629 NITILLVEDEKIVRESLSHALDVYGYKVYEAVNGKEAVEIFKQRSFEIDMVISDIVMPVM 688 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +GI + + P K +F TG+ A + ++ V+ KP L++LV ++ LL Sbjct: 689 NGITAYKEMIAIKPGQKFIFTTGYVGEAHRKEGFDEEDHVVMIKPLMLKELVRKIEELL 747 >gi|298529768|ref|ZP_07017171.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfonatronospira thiodismutans ASO3-1] gi|298511204|gb|EFI35107.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfonatronospira thiodismutans ASO3-1] Length = 502 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 66/115 (57%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +L+ +D++ +R AL GYEV+ +G A +++ R + L+++D+ MP + G+E Sbjct: 12 VLVVDDEESLREICQDALKDEGYEVLQAEDGVQAKEQIARHQDIDLIISDLRMPRLGGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + D+ + +TGFA++ + A L KPF++ L+ +V++++ Sbjct: 72 LLQYTAEHNLDIDFLVMTGFASIETAVECIKTGAADYLPKPFNISHLLVKVDKVI 126 >gi|196231120|ref|ZP_03129980.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224950|gb|EDY19460.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 892 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPE- 58 N+ IL+ EDD +R ++ L + GY + NG +A + + +L+TD+VMP Sbjct: 766 NETILIVEDDSTVRNVVVHVLKQNGYRIYEAVNGQTALELWEQCGLETDVLITDMVMPGG 825 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G ELA++ P LKV++ +G++A D P L KP+ DL+ V + L Sbjct: 826 VSGHELAQQLLAKKPSLKVIYTSGYSAEVFRGDFVLPAGVDFLRKPYRAEDLLAAVGKAL 885 >gi|260062082|ref|YP_003195162.1| two component, sigma54 specific, transcriptional regulator [Robiginitalea biformata HTCC2501] gi|88783644|gb|EAR14815.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Robiginitalea biformata HTCC2501] Length = 441 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +DD + L + L GY + A +++ P LL+TDI MPE+DG Sbjct: 5 KENILMVDDDVGILELLQRHLQSLGYHTFKALSVKEALFILKDSPIDLLITDIQMPEVDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L R A E P + + ITG+ +VA ++ A L+KPF +L V + L Sbjct: 65 LQLVRYAEEHYPGMPKLVITGYPSVAGAQETFRSGAADYLTKPFTREELKQAVRKAL 121 >gi|194337195|ref|YP_002018989.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309672|gb|ACF44372.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1148 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +Q ILL ED+ + + L + GY V++ A A + P LL+TD++MPEM Sbjct: 1019 HQTILLVEDEPGILKLCKLILEQNGYNVLAFERAADAIRMEKNYPGTIDLLVTDVIMPEM 1078 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G EL+++ P L V+FI+G+ A + ++ + KPF+ + L + +L Sbjct: 1079 NGAELSKKLLAARPGLNVLFISGYTADIIPQNTIVDSQLNFIQKPFNPKTLTTIIYNILN 1138 Query: 120 IK 121 K Sbjct: 1139 PK 1140 >gi|322418422|ref|YP_004197645.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124809|gb|ADW12369.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 793 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62 ILL ED+ +R + L GY V+ + A + E LL TD++MPEM G Sbjct: 640 ILLVEDNRMIREVASELLTSFGYRVLVAETPSRALELAAGEGEEIDLLATDVIMPEMTGP 699 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R P L V++I+G+ A+ D + A L+KPF L + +N +L Sbjct: 700 ELYERLQGRYPALPVLYISGYTNAAVPQDEKLRQEAIFLAKPFTLEQFMARINEML 755 >gi|253702609|ref|YP_003023798.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251777459|gb|ACT20040.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 467 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+DD R F+ L GY+V +G A K+ +++TDI+MP ++G+E Sbjct: 5 KILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRVNGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + PD+ + + FA + + L KPF+L +L V R L Sbjct: 65 FIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGL 119 >gi|212691822|ref|ZP_03299950.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855] gi|237708028|ref|ZP_04538509.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|237724821|ref|ZP_04555302.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|265756177|ref|ZP_06090506.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|212665578|gb|EEB26150.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855] gi|229437016|gb|EEO47093.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] gi|229457856|gb|EEO63577.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|263233768|gb|EEZ19377.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1329 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 13/124 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L L +A Y+V +C NG A + E L+L+DI+MPEM G Sbjct: 1071 QRILVVEDNDDLREYLFHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129 Query: 63 EL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-----KVLSKPFHLRDLVNEVN 115 EL A + L + V+ +T ALN + N + K L KPF++ L + Sbjct: 1130 ELCSAIKNNILTSHIPVILLT-----ALNDEKNIVEGLETGADKYLIKPFNIGILKASIA 1184 Query: 116 RLLT 119 +LT Sbjct: 1185 NILT 1188 >gi|89889387|ref|ZP_01200898.1| two component system response regulator [Flavobacteria bacterium BBFL7] gi|89517660|gb|EAS20316.1| two component system response regulator [Flavobacteria bacterium BBFL7] Length = 229 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 61/115 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + + ++L GYEV C+NG AY ++ + + D++MPE+DG L Sbjct: 8 ILLAEDEPALGLIVKESLETRGYEVNHCHNGIEAYQSFEQQTPDIAVLDVMMPELDGFSL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A++ ++ + ++F+T + + L KPF + +L+ + LL+ Sbjct: 68 AKKIRTVNEQMPIIFLTAKSQTEDVLEGFHVGGNDYLKKPFSMEELIVRIKNLLS 122 >gi|330963290|gb|EGH63550.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 355 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 + IL+ +D+ +R L ALG GY ++ ++ + +R + LL+TD+ +P M Sbjct: 235 GETILIVDDEPTVRMLLTDALGDLGYTLIEASDSLAGLKLLRSDVHIDLLITDVGLPGGM 294 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A E+ P LK +FITG+A A D KVL+KPF + L V L+ Sbjct: 295 NGRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGRKVLTKPFAIDVLAARVQELM 353 >gi|330896010|gb|EGH28233.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 698 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 577 DETILVVDDEPAVRLLIAELLEDLGYIVLQAERGADALTILQSKAAIDLLITDVGLPGGM 636 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A A+ VL KPF + +L++ V LL Sbjct: 637 NGRQVADAARDVRPDLKILFVTGYAENAVLAHDTLEPGMHVLPKPFAIAELISRVTELL 695 >gi|315644452|ref|ZP_07897585.1| response regulator receiver protein [Paenibacillus vortex V453] gi|315280202|gb|EFU43495.1| response regulator receiver protein [Paenibacillus vortex V453] Length = 130 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D + +R L++ GYE NG +A + V+ L+L D+ +P MDG+ Sbjct: 7 HKVLIVDDQNGIRILLVEVFSSEGYETFQAANGKAALEIVKLHTPDLVLLDMKIPGMDGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + +++PD+KV+ +T + + + ++ +KPF + ++ VN L Sbjct: 67 EILKHIKQMNPDIKVIMMTAYGELDMIKEATDLGALMHFTKPFDIDEMRQAVNMQL 122 >gi|296447369|ref|ZP_06889296.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylosinus trichosporium OB3b] gi|296255148|gb|EFH02248.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylosinus trichosporium OB3b] Length = 490 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 64/117 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +IL+A+DD +R + +AL +AGYEV + A+ + V+ L++TD+VMP+ + Sbjct: 3 HGEILVADDDAAIRTVVAQALSRAGYEVRTTGTAATLWRWVQSGEGDLVVTDVVMPDENA 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R +L PDL ++ ++ ++ L KPF L++LV V R + Sbjct: 63 FELLPRIKKLRPDLPIIVMSAQNTFMTAIRASERGAYDYLPKPFDLKELVGIVGRAM 119 >gi|192288925|ref|YP_001989530.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192282674|gb|ACE99054.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1076 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMP-EM 59 + IL+ EDD +R ++ L GY +S N A+A + F LL TD+VMP M Sbjct: 927 TETILVVEDDAMVRSYVNAQLKSLGYTTLSVGNAAAALSIGESDTAFDLLFTDVVMPGPM 986 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G++LA + P L+V++ +G++ AL + + +LSKP+ DL + R L Sbjct: 987 NGVQLAAEMIKRRPGLRVLYTSGYSENALIHNDRIDSDVLLLSKPYRRSDLARMIRRAL 1045 >gi|289675183|ref|ZP_06496073.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 644 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 523 DETILVVDDEPAVRLLIAELLEDLGYIVLQAERGADALTILQSKAAIDLLITDVGLPGGM 582 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A A+ VL KPF + +L++ V LL Sbjct: 583 NGRQVADAARDVRPDLKILFVTGYAENAVLAHDTLEPGMHVLPKPFAIAELISRVTELL 641 >gi|108760318|ref|YP_628730.1| response regulator [Myxococcus xanthus DK 1622] gi|54873444|gb|AAV40994.1| RedD [Myxococcus xanthus] gi|108464198|gb|ABF89383.1| response regulator [Myxococcus xanthus DK 1622] Length = 255 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 61/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D++ +R L L G+ V+ NG A + ++ ++LTDI MP + G+E Sbjct: 11 RILLVDDEESLRITLAANLELEGHTVLEAANGEEALRLLEKQSVDVVLTDIRMPGLHGVE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L RR + PD+ V+ +T F A L D+ A VL KPF + ++ V R Sbjct: 71 LLRRIKQERPDMPVVLMTAFTAEELVDDALAEGAFTVLPKPFDVTHALDTVLR 123 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D + + R +++AL G + +G A +R + + + D+VMPEM G E Sbjct: 129 QVLVVDDTEQVARGMVRALSTVGLRARAVYSGEEALASLRSGEYDVCVLDLVMPEMSGPE 188 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + + + ++ ++G + A ++KP LR+LV + R+ Sbjct: 189 LVSKVRAANLSVAIIAVSGHVVPEMLRRVAAQGAVVCMTKPVPLRELVQAIARV 242 >gi|254429063|ref|ZP_05042770.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195232|gb|EDX90191.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 713 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L ED++ + L K G++V + +NG +A + +EPF L+L D +MPEMDG E Sbjct: 583 RLMLVEDNEVNQLVTRGMLSKLGFQVKTVSNGETALALLEQEPFDLVLMDCMMPEMDGFE 642 Query: 64 LARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E++ D V+ +T A + A L+KP HL L + R L Sbjct: 643 VTRRLREIEQDKASLRTPVVAVTANTAEGVQARCLAAGMDDFLAKPVHLDALETVLRRWL 702 >gi|182413348|ref|YP_001818414.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177840562|gb|ACB74814.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 817 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMD 60 + ILLAED+ +R + L +AGY V+ +G A A + +L + D+VMP++ Sbjct: 697 ETILLAEDEPMVRDLARRILARAGYRVLLACDGPEACALFTQHADTIALAILDVVMPQLG 756 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ R + L P L V+F +G+A AL D ++L+KP+ +++ V L Sbjct: 757 GREVYDRISALRPGLPVIFCSGYAGSALGADLPGGDTRRLLTKPYGADEMLGSVREAL 814 >gi|330894550|gb|EGH27211.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 698 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R+ + + L GY ++ GA A ++ + LL+TD+ +P M Sbjct: 577 DETILVVDDEPAVRQLIAELLEDLGYTILQAERGADALTILQSKAAIDLLITDVGLPGGM 636 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 637 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTDLL 695 >gi|168701909|ref|ZP_02734186.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Gemmata obscuriglobus UQM 2246] Length = 463 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 67/119 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ R L ++L AG+E ++ A A D +RE +LL+D++MP DGI+ Sbjct: 11 KLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGTDGIQ 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L RR E DP L + +TG + ++ + KPF L+ ++ ++R + ++ Sbjct: 71 LLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAMEVRR 129 >gi|170691196|ref|ZP_02882362.1| histidine kinase [Burkholderia graminis C4D1M] gi|170144445|gb|EDT12607.1| histidine kinase [Burkholderia graminis C4D1M] Length = 552 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 2/112 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ EDD ++R L+++L GY V +G + ++ ++ LL+ D MP M+GI Sbjct: 437 KRVLVIEDDSEVRAMLVESLKMLGYNVTEAPDGRAGLARLTDDNPDLLMVDFAMPGMNGI 496 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ A ++ DL V+ TG+A V ++ S + VL KPF L DL V Sbjct: 497 DVIAEARKMRSDLPVILATGYADVDISGLS--VERCTVLRKPFQLDDLARTV 546 >gi|149927671|ref|ZP_01915924.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105] gi|149823725|gb|EDM82953.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105] Length = 1532 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ ++ + +D+ R L L + GY+V +N A D +R++P LLLTD+ +P + Sbjct: 3 LSARLYVVDDETLQREALSTLLEQEGYQVTGFSNAEDALDALRKQPCDLLLTDLRLPSLS 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL R+A E+ PDL + +TG ++ + + KPF ++ + R L Sbjct: 63 GTELIRQALEITPDLNAILMTGHGSMETAVQAIQMGVLDYILKPFKFAEIAPVIRRAL 120 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPEM 59 +LL +DD ++ + L +G+++ + +GA A E + F ++TD+ MPEM Sbjct: 1412 LLLVDDDPNVLAAMSAILEMSGHQIHTAGSGALAAQLFNETARKGKAFDAVITDLGMPEM 1471 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 DG ELA L P V+ +TG+ P+ +++KP Sbjct: 1472 DGKELAEMIKSLSPATPVLMLTGWGKQMSLSQEEVPQVDMIMAKP 1516 >gi|116624045|ref|YP_826201.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227207|gb|ABJ85916.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1210 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPE- 58 ++ IL+ ED+ +R L GY ++ NG A +E S LLLTDI+MPE Sbjct: 1089 SETILVVEDEPALRVLTRAVLEPRGYRLLEAANGVEALRAWQEHRGSIHLLLTDIMMPEG 1148 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G+ELA R E P+L+V++ +G++ + L KP+ + L+ V R L Sbjct: 1149 MSGLELAARLREFRPELRVIYTSGYSGDIAGGQLQLEEGRNFLQKPYSPQQLLEAVRRCL 1208 Query: 119 TI 120 I Sbjct: 1209 DI 1210 >gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] Length = 228 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL +D+ ++ + L +AGYEV ++G A + ++ L++TDI+MP MD Sbjct: 1 MTKRILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQKYSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRL 117 G +L L PD +FIT A PD S + ++KPF R+LV VN + Sbjct: 61 GYDLIGEVQYLAPDQPFLFIT---AKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNI 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|253700194|ref|YP_003021383.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251775044|gb|ACT17625.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 233 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 8/120 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL+ +D+ +R L L GY V+ +G A +K ++ L++ D+VMP Sbjct: 110 SETILIVDDEKQLRDMLSDFLASYGYTVILAEDGQDALEKYKQNHPDIHLVVMDVVMPRK 169 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ R+ EL P+ KV+F++G+ PD A +N +++ KPF +++ + +L Sbjct: 170 DGLTCFRQIKELHPEAKVLFMSGY-----RPDHLQAKENFRMIQKPFSPVEMIKAIRHVL 224 >gi|309789887|ref|ZP_07684465.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308228094|gb|EFO81744.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 127 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 2/108 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 N I+L ED+ D+ L + + GY++V+ N GA A ++ P L++TD MP M Sbjct: 8 NPAIVLVEDEPDILIILHRLMRDLTGGYDIVTVNGGAEALAQIALRPVPLVITDYNMPGM 67 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +G++LA E PD +V+ IT +A L + + L KPF L Sbjct: 68 NGLQLAAAIKETSPDTRVVMITAYATPELEKRAREQRVDYYLPKPFPL 115 >gi|253573532|ref|ZP_04850875.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847060|gb|EES75065.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 121 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G+EVV +GA A +K +E L+ DI MPEM Sbjct: 1 MANRILIVDDAAFMRMMIRDILTKNGFEVVGEAQDGAQAIEKFKELHPDLITMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + +LDP+ KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 61 DGIAALKEIKKLDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQSDRVIEAINKTLG 120 Query: 120 I 120 + Sbjct: 121 V 121 >gi|254249970|ref|ZP_04943290.1| PAS [Burkholderia cenocepacia PC184] gi|124876471|gb|EAY66461.1| PAS [Burkholderia cenocepacia PC184] Length = 633 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G +A + E P LL TD++MP + Sbjct: 508 ETILVVEDDADVRLTVVDMLAQLGYKVITASDGEAALRVLDSETPIDLLFTDVIMPGRVK 567 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL RRA P L V+F +G+ + +L KP+ +L + +L Sbjct: 568 GGELGRRAALRKPPLPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAARIRSVL 625 >gi|308274676|emb|CBX31275.1| hypothetical protein N47_E47870 [uncultured Desulfobacterium sp.] Length = 402 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 63/117 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL +D++D+R L L GY++ NG A E ++L+DI MP +D Sbjct: 29 MEKQILLVDDEEDIRDVLGVYLKDQGYDIYMAGNGEEALKIFAEHKPPIVLSDIKMPGID 88 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIEL +R + +PD + + ITG + L S + A ++KP ++ L + +L Sbjct: 89 GIELLKRIKQDNPDTEFIMITGHGDMDLAIASFHDQAADFITKPINVNILDISLKKL 145 >gi|94494912|ref|ZP_01301493.1| sensor histidine kinase [Sphingomonas sp. SKA58] gi|94425178|gb|EAT10198.1| sensor histidine kinase [Sphingomonas sp. SKA58] Length = 570 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 10/118 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMD 60 + ILL ED DD+R + L GY++V ++G A + ++ LL TDIVMP M Sbjct: 435 TETILLVEDSDDVRALAAEQLSALGYKLVLASSGEEALELWDKQKIDLLFTDIVMPGGMS 494 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD--SNAPKNAK--VLSKPFHLRDLVNEV 114 G+EL R +L PD+ V+ TG+ N D ++ P+ V+ KP+ +L + + Sbjct: 495 GLELVERFVDLAPDIPVLMTTGY-----NEDLVADIPRGTSLDVIGKPYRREELADRI 547 >gi|71737748|ref|YP_273628.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558301|gb|AAZ37512.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 695 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D +R+ + + L GY ++ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDKPAVRQLIAELLEDLGYTILQAERGADALTILQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 692 >gi|126737807|ref|ZP_01753537.1| sensory box sensor histidine kianse/response regulator [Roseobacter sp. SK209-2-6] gi|126721200|gb|EBA17904.1| sensory box sensor histidine kianse/response regulator [Roseobacter sp. SK209-2-6] Length = 769 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 10/120 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEP---FSLLLTDIVMPEM 59 +LL ED+ +R F +AL GY V+ SA D +R E+P + +TD+VMP M Sbjct: 653 VLLVEDEAPVRAFASRALRMRGYTVLEAE---SAEDALRTLEDPSLNVDVFVTDVVMPGM 709 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALN-PDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG R A + P+ +V+F++G+A A + N P N+ L KPF L L V++ L Sbjct: 710 DGPTWVREALKERPNTRVVFVSGYAEGAFGEAEPNVP-NSVFLPKPFSLNQLTETVHQQL 768 >gi|156742625|ref|YP_001432754.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156233953|gb|ABU58736.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 637 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY-DKVREEPFSLLLTDIVMPEMD 60 ++ I+L EDD +R + + L GY V+ ++ A ++ LLL+D V+P Sbjct: 519 SETIMLVEDDPAVRSLVARTLRAHGYTVLEASSDQEAIAHAAQDATIHLLLSDHVIPHTS 578 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK--NAKVLSKPFHLRDLVNEVNRLL 118 G+ LA R T L P ++V+F+TG+ + P NA + +A V+ KPF +L++ V LL Sbjct: 579 GVALADRLTFLQPRMRVLFMTGY---VVEPQQNAHRATDAPVIEKPFTPTELLHRVRALL 635 >gi|26991060|ref|NP_746485.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida KT2440] gi|24986093|gb|AAN69949.1|AE016633_7 response regulator FleR [Pseudomonas putida KT2440] Length = 451 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R+ L L G+ + + A + V E+ FSL+++D+ MP MD Sbjct: 1 MAIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L + P L V+ +T AAV ++ A L KPF + L+N V R Sbjct: 61 GHQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVER 116 >gi|310780087|ref|YP_003968419.1| response regulator receiver protein [Ilyobacter polytropus DSM 2926] gi|309749410|gb|ADO84071.1| response regulator receiver protein [Ilyobacter polytropus DSM 2926] Length = 401 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN K+LL EDD R+ L + + K GYEV++ +G + + E +++TD+ MP++D Sbjct: 1 MNIKVLLVEDDKMARKRLKRVIEKEGYEVIAAQDGLEGLELFKSERPDVVITDVKMPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE+ R E+ +V+ ITG + + + + KP + L+ + R Sbjct: 61 GIEVMHRIKEMSKTTEVILITGHGDIDMAIVALRDGALDYIKKPIDIDQLIVSLGR 116 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD+ R L K K GY+V + +G E +LLTD+ MP M+G++ Sbjct: 133 ILILEDDEKTREKLGKIYIKEGYKVFTAPDGERGLKIFSENKIDILLTDLRMPIMNGLQF 192 Query: 65 ARRATELDPDLKVMFITGFA--AVALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ D + + ++GF A A+ N N +SKP L L+ Sbjct: 193 ISEVKKISSDCEFIVLSGFGDEADAVEAMRNGAIN--FISKPIDLEQLL 239 >gi|260172793|ref|ZP_05759205.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|315921079|ref|ZP_07917319.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694954|gb|EFS31789.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1330 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+DD R FLI L K Y+V NG A + + + ++++D++MPEMDG+EL Sbjct: 1083 LLIVEDNDDFRNFLINCL-KGTYQVFDAPNGKEALEILAHQSIQIVISDVMMPEMDGMEL 1141 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRLL 118 R+ + D++ I A D + K ++KPF+L L+ + ++L Sbjct: 1142 CRK---IKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKIL 1197 >gi|330936891|gb|EGH41024.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 695 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEPAVRLLIAELLEDLGYIVLQAERGADALTILQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A A+ VL KPF + +L++ V LL Sbjct: 634 NGRQVADAARDVRPDLKILFVTGYAENAVLAHDTLEPGMHVLPKPFAIAELISRVTELL 692 >gi|294501888|ref|YP_003565588.1| sporulation initiation phosphotransferase F (response regulator) [Bacillus megaterium QM B1551] gi|294351825|gb|ADE72154.1| sporulation initiation phosphotransferase F (response regulator) [Bacillus megaterium QM B1551] Length = 123 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D +R L + L K GY NG A D +E+ L+L D+ +P MD Sbjct: 1 MAEKILIVDDQYGIRILLTEVLQKEGYTTFQAANGFQAIDITKEQAPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R + D +KV+ +T + + + ++ +KPF + ++ V + + Sbjct: 61 GIEILKRLKQHDETIKVIIMTAYGELDMIQEAKDLGALTHFAKPFDIDEIRKVVREYIPV 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] Length = 253 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 8/120 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 +KIL+ +D+ D+R+ + L + GY+++ NG A D VRE L++ DI+MPEM G Sbjct: 25 EKILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENSDIDLIIMDIMMPEMSG 84 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 E E + V+F+T A PD N + LSKPF +LV +V L+ Sbjct: 85 TESCSAIREF-SSVPVLFLT---AKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALI 140 >gi|148265667|ref|YP_001232373.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399167|gb|ABQ27800.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 471 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++IL+ +D+ +R + + L G+ V + NG A +K++ E F LL+TD+ MP M Sbjct: 2 VRKRILVVDDEAVIREGMRRILDGGGFTVETFANGYLAIEKLQAEAFDLLITDLKMPGMG 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 G+E+ + L P++ V+ ITG+++V + KN V ++KPF +++ +V L Sbjct: 62 GMEVLKSIKVLQPEMPVIIITGYSSV--DTAVEVMKNGAVDYIAKPFTPEEIIEKVENAL 119 Query: 119 TIK 121 K Sbjct: 120 EQK 122 >gi|118579570|ref|YP_900820.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502280|gb|ABK98762.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 983 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + ILLAEDD +R L +AGY V+ ++G A DK E ++L++D++MP++D Sbjct: 863 ETILLAEDDITVRELHSMILEEAGYHVIRSSDGQEALDKFMEHQSEVAMLVSDVIMPKID 922 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L ++ PD+KV+ I+G+ + ++KP +L+ +V +L Sbjct: 923 GKRLYEEIRKIRPDMKVLLISGYTSDIFVERGIMEDEYGFMAKPVVPSELLRQVRSIL 980 >gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 229 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 69/115 (60%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + D +M +T ++ ++ + + A + + KPF + +L+ + Sbjct: 61 GFEVTRRLQQ-EKDTYIMMMTARDSI-MDIVAGLDRGADEYIIKPFAIEELLARI 113 >gi|308274678|emb|CBX31277.1| hypothetical protein N47_E47890 [uncultured Desulfobacterium sp.] Length = 1155 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ MR L + L + + V +G+ A D ++ +P+ L+L DI+MP MDG+E+ Sbjct: 192 ILVADDELVMRDSLKEWLTEERFSVDMAASGSEALDMLKAKPYDLMLLDIMMPGMDGVEV 251 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A E DL V+ +T +A V ++ L KPF+ L + R+ Sbjct: 252 LQKAKENFADLNVIMMTAYATVETAVEAMKKGAMDYLVKPFNPDALTPMILRIF 305 >gi|197119042|ref|YP_002139469.1| XRE family helix-turn-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088402|gb|ACH39673.1| helix-turn-helix transcriptional response regulator, XRE family [Geobacter bemidjiensis Bem] Length = 233 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 8/120 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL+ +D+ +R L L GY V+ +G A +K ++ L++ D+VMP Sbjct: 110 SETILVVDDEKQLRDMLSDFLASYGYTVILAEDGQDALEKYKQNHNDIHLVVMDVVMPRK 169 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ R+ EL P+ KV+F++G+ PD A +N K++ KPF +++ + ++L Sbjct: 170 DGLTCFRQIKELHPEAKVLFMSGY-----RPDHLQAKENFKMIQKPFSPVEMIMAIRQVL 224 >gi|89095589|ref|ZP_01168483.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89089335|gb|EAR68442.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 124 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 63/122 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + L K GY+ NG A + V + L+L D+ +P MD Sbjct: 1 MKGKILIVDDQFGIRILLNEVLQKEGYDTYQAANGVQALEIVTKHSPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D D++V+ +T + + + ++ +KPF + D+ V + + I Sbjct: 61 GIEILKRMKVIDQDIRVIIMTAYGELDMIQEAKDLGALTHFAKPFDIDDIRAAVKKYVPI 120 Query: 121 KN 122 N Sbjct: 121 TN 122 >gi|288959744|ref|YP_003450084.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912052|dbj|BAI73540.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1082 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MDGI 62 IL+ EDD ++R L G+ V+ A +R EP LL +DIVMP M+G Sbjct: 777 ILMVEDDHNIRENGCALLRGWGHRVIGAAGAGEALVVLRGPEPLDLLFSDIVMPPGMNGA 836 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ELAR A L P L V+ +GFA A+ D A +++KP+ +L ++RL Sbjct: 837 ELAREARRLRPGLPVLLASGFATHAVVADDVAMGGYDLIAKPYDPAELRERLDRL 891 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY--------DKVREEPFSLLLTDIV 55 +IL+ ED + R + L +AG+ V + +GA A + E F +L DI Sbjct: 941 RILVVEDVEMNRLLAVTLLKQAGHGVAAVEDGAQAVAAVAQAATEGSGREAFDAILMDIN 1000 Query: 56 MPEMDGIELAR 66 MP MDG+E R Sbjct: 1001 MPVMDGLEATR 1011 >gi|325276407|ref|ZP_08142180.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324098474|gb|EGB96547.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 690 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 +++LL +D+ ++R + + L + G++VV ++ +A ++ R + PF L++TDI +P Sbjct: 571 ERLLLVDDELNLRAVMREYLVERGFQVVDASDANTALERFRHDGPFDLVITDIGLPGGFS 630 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A+ P ++FITG+A + P +++KPF L DL ++ R+L Sbjct: 631 GRQVAKAMRMQLPQQNILFITGYAGQPVEPQLLEQPGTALMNKPFSLADLADQALRML 688 >gi|296535684|ref|ZP_06897858.1| multi-sensor hybrid histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296263981|gb|EFH10432.1| multi-sensor hybrid histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 526 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 ++LL ED+ +RR +AL + G+EV++ + SA + + P +LL++D+VMP MDG Sbjct: 397 RVLLVEDEAPLRRLAERALARDGWEVMAAEDAESALELLEGAAAPPALLVSDVVMPGMDG 456 Query: 62 IELARRATELDPDLKVMFITGFA 84 + LA R E P L V+ ++G+A Sbjct: 457 VALAARVRERLPGLPVLLVSGYA 479 >gi|120611639|ref|YP_971317.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120590103|gb|ABM33543.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 889 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ +D+ +R +++ L + GY+ + ++G SA ++ LL+TD+ +P M+G Sbjct: 770 VLVVDDEPSVRALVVEVLHEMGYQTIEAHDGPSALQVLQSRTHLDLLITDVGLPGGMNGR 829 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA PDL+++FITG+A A + + + VL+KPF L L + V L+ Sbjct: 830 QLADGGRLTRPDLQILFITGYAENAAVGNGHLERGMHVLTKPFTLDALAHRVRTLI 885 >gi|78222435|ref|YP_384182.1| response regulator receiver domain-containing protein [Geobacter metallireducens GS-15] gi|78193690|gb|ABB31457.1| response regulator receiver domain protein (CheY-like) [Geobacter metallireducens GS-15] Length = 143 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 56/111 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD D+ F+ AL G +V G A + E + +LLTD MP MDG E Sbjct: 16 RILVVDDDRDVLFFMKLALETEGIDVTCAERGEDALGLLAERSYGVLLTDQNMPGMDGFE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 LA+ A L P+L + TG + + A +V KPF+ + L ++ Sbjct: 76 LAQHARRLQPELIIFMGTGHLYPGIEERATAVGIREVFGKPFNFQRLFEQL 126 >gi|107025614|ref|YP_623125.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU 1054] gi|116693204|ref|YP_838737.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia HI2424] gi|105894988|gb|ABF78152.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU 1054] gi|116651204|gb|ABK11844.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia HI2424] Length = 589 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G +A + E P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLTVVDMLAQLGYKVITASDGEAALRVLDSETPIDLLFTDVIMPGRVK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL RRA P L V+F +G+ + +L KP+ +L + +L Sbjct: 524 GGELGRRAALRKPPLPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAARIRSVL 581 >gi|255690627|ref|ZP_05414302.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623650|gb|EEX46521.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1353 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L+ ++ + Y+V + ++G A +KVREE S++L+D+VMP M G Sbjct: 1093 DAKMLIVEDNESIKQMLV-SIFETFYQVTTASDGEEALEKVREEMPSIILSDVVMPRMSG 1151 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL +R T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1152 TELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1210 >gi|86750880|ref|YP_487376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573908|gb|ABD08465.1| multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA [Rhodopseudomonas palustris HaA2] Length = 874 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ NG A ++ L+++D+VMPEMDG Sbjct: 756 ILLVEDEEGLRSLNARGLRSRGYNVIEAGNGIEALEEFDAHGGAVDLVVSDVVMPEMDGP 815 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + + +LK++F++G+A A + + P+N + L+KPF L LV +V + Sbjct: 816 TLLKAMRARNSELKIIFVSGYAEDAF--EKSLPENEQFAFLAKPFALSALVAKVKETM 871 >gi|325107448|ref|YP_004268516.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967716|gb|ADY58494.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1168 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 +ILLAED D +R + L K G V NGA A D+ PF LL+TDI MPE Sbjct: 1028 RILLAEDGPDNQRLISFLLRKLGATVEIAENGAVALDRFHAAAESGSPFELLVTDIQMPE 1087 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG L R + ++ +T A A + L+KP DL+N + +++ Sbjct: 1088 MDGYTLTRTLRSEGSTIPILALTAHAMAEDRQKCLAAGCNEFLTKPVKKSDLINALEQII 1147 Query: 119 T 119 T Sbjct: 1148 T 1148 >gi|91775264|ref|YP_545020.1| two component, sigma54 specific, Fis family transcriptional regulator [Methylobacillus flagellatus KT] gi|91775408|ref|YP_545164.1| two component, sigma54 specific, Fis family transcriptional regulator [Methylobacillus flagellatus KT] gi|91709251|gb|ABE49179.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacillus flagellatus KT] gi|91709395|gb|ABE49323.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacillus flagellatus KT] Length = 456 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL +DD D+ + + L AGY+V++ N A ++ SL++TD+ MP MDG Sbjct: 5 TKKILTVDDDPDILKLMGMRLQAAGYQVITATNAEEALSQIAISRPSLVITDLRMPGMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + L + DP L V+ +T ++ D+ L+KPF + L+ +V L I Sbjct: 65 LALFDAIHQSDPALPVIMVTAHGSIPEAVDATQRGVFGFLTKPFDSKSLLQQVEAALRI 123 >gi|189426647|ref|YP_001953824.1| response regulator receiver protein [Geobacter lovleyi SZ] gi|189422906|gb|ACD97304.1| response regulator receiver protein [Geobacter lovleyi SZ] Length = 131 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 57/108 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+++ R L + L + GYEV + NG A +R P L++TD+ MPEM+G+ Sbjct: 6 KRILVVDDEENTRLALTRLLSREGYEVKTAANGLEALSSLRNNPAELIITDLNMPEMNGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R P V+ IT F V ++ + L+KP L +L Sbjct: 66 SFLRELNREYPASNVIMITAFGEVESYLEALNLGAFEYLNKPLRLEEL 113 >gi|170737529|ref|YP_001778789.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169819717|gb|ACA94299.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 588 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G +A + E P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLTVVDMLAQLGYKVITASDGEAALRVLDSETPIDLLFTDVIMPGRVK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL RRA P L V+F +G+ + +L KP+ +L + +L Sbjct: 524 GGELGRRAALRKPPLPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAARIRSVL 581 >gi|315648974|ref|ZP_07902068.1| two component transcriptional regulator, AraC family protein [Paenibacillus vortex V453] gi|315275655|gb|EFU39009.1| two component transcriptional regulator, AraC family protein [Paenibacillus vortex V453] Length = 524 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 7/119 (5%) Query: 4 KILLAEDD----DDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+LLA+D+ + M+ F+ G +V+ S NNG +AY+ + E +L+TD+ MP Sbjct: 3 KVLLADDEILDLEGMKSFI--PWENLGMKVIDSVNNGFAAYEVLEREKIDILVTDVRMPN 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G+ELA+RA +L +L+++F++G+ + A + KP ++L++ + ++ Sbjct: 61 MTGLELAQRALKLQEELRIIFVSGYQDFGYVKQAIALNACSYVLKPMEDQELIDALTKV 119 >gi|89094868|ref|ZP_01167800.1| two-component response regulator [Oceanospirillum sp. MED92] gi|89080825|gb|EAR60065.1| two-component response regulator [Oceanospirillum sp. MED92] Length = 454 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ EDD+++R L L AG++ + + A + E +++TD+ MP MD Sbjct: 1 MSNRILIVEDDNELREALCDTLELAGFDYIEAEDAEKALALLTEHQVDMVVTDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G EL + + P L VM IT F V+ ++ L KPF L++ V R Sbjct: 61 GHELLSQIRQSYPGLPVMLITAFGQVSKAVEAIKAGAVDYLMKPFDSDALISSVRRF 117 >gi|206890002|ref|YP_002248585.1| response regulator HsfA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741940|gb|ACI20997.1| response regulator HsfA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 448 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 1/111 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ + L L K GY+V ++G A + ++ F ++LTDI M ++DG E Sbjct: 3 KVLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R+ L PD +V+ ITG+A V + ++KPF L D++ ++ Sbjct: 63 ILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKL-DIIRKI 112 >gi|158523277|ref|YP_001531147.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512103|gb|ABW69070.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1180 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 + +L+ ED+ + + K L GY V++ A+A + K LL+TD+VMPEM Sbjct: 977 GESLLVVEDEPSVLKLANKMLAGLGYTVMTAQGPAAALELSKRHTGGIDLLITDVVMPEM 1036 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA + + P L+V++++G+ A + K + + KPF+ DL +V L Sbjct: 1037 SGRDLAEKLESIHPGLRVLYMSGYTANVIAHRGILDKGVQFIQKPFNKNDLARKVREAL 1095 >gi|313905194|ref|ZP_07838562.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469947|gb|EFR65281.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 221 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED DM R L L GYEV S +GA A + + + + +++ DI+MP++DG+E Sbjct: 2 KILLAEDTKDMNRALTAVLEHEGYEVASAFDGAEALEYIDRDSYDVMILDIMMPKVDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R A V+ +T A + D A +A L+KPF +++L+ + ++ Sbjct: 62 VIREARNRKIVTPVLLLTAKAEI---DDKVAGLDAGADDYLTKPFSIKELLARIRAMV 116 >gi|197116934|ref|YP_002137361.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086294|gb|ACH37565.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 531 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 2/103 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 ILL +D++++R + L G++V++ NNG+ A + R+ L+L D+ MPE+DG+ Sbjct: 413 ILLVDDEEELRAVGCELLTSMGFKVIAVNNGSEALAIWQERKSEIDLVLMDLTMPELDGV 472 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E R E P L V+F +G+ + P A ++KP+ Sbjct: 473 ETYRALREDTPTLPVLFCSGYGDQDIRPCIGEDARAGFIAKPY 515 >gi|110598430|ref|ZP_01386702.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339964|gb|EAT58467.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 840 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---DKVREEPFSLLLTDIVMPE 58 + IL+ ED+ + + L + GY V+ A DK E+ LLLTD++MPE Sbjct: 716 DHTILIVEDEPGILKLCKLMLERKGYRVLVAETPRDAITLADKYNEK-IDLLLTDVIMPE 774 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M+G +L+ + PD+K++F++G+ A AL +N + KPF + L N V L Sbjct: 775 MNGQDLSEIILAVRPDIKILFMSGYTADALGGTTNIHTEHHFIRKPFTITSLNNAVFDTL 834 Query: 119 TIKN 122 N Sbjct: 835 NADN 838 >gi|71734891|ref|YP_273966.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555444|gb|AAZ34655.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 956 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 837 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 896 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 897 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 955 >gi|297568936|ref|YP_003690280.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924851|gb|ADH85661.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 467 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 8/121 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ MR FL L + GY V + G +A + + E + LL++DI MP +G+ Sbjct: 2 KRILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDS--NAPKNAK--VLSKPFHLRDLVNEVNRLL 118 EL RA E+ P+L V+ +T FA +PD +A K+ ++KPF + ++ + V L Sbjct: 62 ELLVRAKEIKPELPVVLVTAFA----SPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTAL 117 Query: 119 T 119 + Sbjct: 118 S 118 >gi|120613360|ref|YP_973038.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120591824|gb|ABM35264.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 728 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 2/105 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDGI 62 +L+ +D+ +R + ++L + GY V+ +G SA + +RE P LLLTD+ +P M+G Sbjct: 605 VLVVDDEPAVRSTVAESLREQGYRVLEAEDGPSALEMLREAGPLDLLLTDVGLPGGMNGR 664 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 ++A L P L V+FITG+A A+ + + VL+KPF L Sbjct: 665 QVADAGRVLRPGLPVLFITGYAEQAVIGERDLDPGMGVLTKPFAL 709 >gi|89098630|ref|ZP_01171512.1| two-component response regulator involved in modulation of flagellar [Bacillus sp. NRRL B-14911] gi|89086592|gb|EAR65711.1| two-component response regulator involved in modulation of flagellar [Bacillus sp. NRRL B-14911] Length = 120 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M QKIL+ +D MR + L K GY+VV +GA A +K +E L+ DI MPEM Sbjct: 1 MAQKILIVDDAAFMRMMIKDILSKNGYDVVGEAADGAQAVEKYKETQPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + +L+P KV+ + A+ D+ + KPF ++ +++ L Sbjct: 61 DGITALKEIKKLNPSAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVLEAISKTL 119 >gi|163857757|ref|YP_001632055.1| two-component hybrid sensor and regulator [Bordetella petrii DSM 12804] gi|163261485|emb|CAP43787.1| two-component hybrid sensor and regulator [Bordetella petrii] Length = 533 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 5/117 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 KILL ED+ ++ + L G EVV+ +G +A D + R+ F L+++DIVMPE++ Sbjct: 418 HKILLVEDNAEVSDIVTCLLQDLGQEVVAAPHGNAALDILNQRDGAFDLVISDIVMPELN 477 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G++LAR+ + P ++++ TG++ + + P VL KP+ + L ++ + Sbjct: 478 GLQLARKIQQRWPRMRIVLATGYSHALADLE---PAEFPVLHKPYSIEALTKVIDAI 531 >gi|289648460|ref|ZP_06479803.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330868343|gb|EGH03052.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 956 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 837 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 896 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 897 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 955 >gi|298527666|ref|ZP_07015070.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] gi|298511318|gb|EFI35220.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] Length = 470 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 Q++++ +D+ DM + L + L + +V + ++ S + ++ +P +LL DI MPEM Sbjct: 3 KQRLMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIRMPEM 62 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E+ E+DP + V+ IT + ++ ++ ++KPF + DLV +N+ L Sbjct: 63 DGMEVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLNKAL 121 >gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1131 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLA+D+ DMR ++ + LG + Y + + +NG A + E+P L+LTD++MPEMDG EL Sbjct: 652 LLLADDNRDMREYIERLLG-SRYRIRAASNGKRALEMATEDPPDLVLTDVMMPEMDGFEL 710 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 A RA + ++ ++ A + L KPF R+LV V L + Sbjct: 711 LAALRANSATSTIPIIVLSARAGEEAQIEGLQHGADDYLVKPFSARELVARVENNLRL 768 >gi|302185541|ref|ZP_07262214.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 645 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 523 DETILVVDDEPAIRLLIAELLEDLGYVVLQAERGADALTILQSKAAIDLLITDVGLPGGM 582 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 583 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 641 >gi|224371000|ref|YP_002605164.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223693717|gb|ACN17000.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 825 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPE 58 N+ ILL ED+ + + L + GY V++ + S + LL+TD+VMPE Sbjct: 702 NETILLVEDEKAILKMTKIMLERLGYTVLTASAPTEAISIMETSNVNEIQLLMTDVVMPE 761 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M+G +L+R+ + P LK +F++G+ A + + ++KPF ++DL +V +L Sbjct: 762 MNGRDLSRKLLTIYPGLKCLFMSGYTANVIAHHGVLDTGVQFINKPFSMQDLAAKVRDVL 821 >gi|331012711|gb|EGH92767.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 797 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 678 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 737 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 738 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 796 >gi|330986117|gb|EGH84220.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 956 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 837 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 896 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 897 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 955 >gi|322417851|ref|YP_004197074.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124238|gb|ADW11798.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 865 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59 N+ +LL EDD +R + + L GY V++ +G A +K RE S +++ D++MP M Sbjct: 745 NETVLLVEDDVAIREMVQELLQDFGYRVITAVDGVDAVEKFREAAGSVQMVILDVIMPRM 804 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G + + L P +K +F++G+ A + LSKP + +L+ +V LL Sbjct: 805 NGRDAYQAIAALSPGVKAIFMSGYTADIITDTLTKGDARHFLSKPIKINELLVKVRGLL 863 >gi|145219761|ref|YP_001130470.1| multi-sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145205925|gb|ABP36968.1| multi-sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 706 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 IL+ ED+ D+ + + + L G+ V++ + +A VR+ P LL++D+V+P M+G+ Sbjct: 589 ILVVEDEPDILQLVTRFLENQGHRVLTAEDAETALAMVRDRQLPLKLLVSDVVLPGMNGV 648 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + + PDLK +F++G+A + + + KPF ++ + ++ +L Sbjct: 649 DMNQELRKEIPDLKTLFMSGYAPERIRQHGAFEEGVNFIQKPFAMKAFLKLIHDIL 704 >gi|206564190|ref|YP_002234953.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] gi|198040230|emb|CAR56213.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] Length = 588 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G +A + E P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLTVVDMLAQLGYKVITASDGEAALRVLDSETPIDLLFTDVIMPGRVK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL RRA P L V+F +G+ + +L KP+ +L + +L Sbjct: 524 GGELGRRAALRKPPLPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAARIRSVL 581 >gi|224371089|ref|YP_002605253.1| sigma-54 dependent two component transcriptional regulator (Fis family protein) [Desulfobacterium autotrophicum HRM2] gi|223693806|gb|ACN17089.1| sigma-54 dependent two component transcriptional regulator (Fis family protein) [Desulfobacterium autotrophicum HRM2] Length = 142 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 63/116 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL +D+ D + + + G +V + N+ A ++V+ E F ++ D++MPEMD Sbjct: 1 MGEKILLVDDEQDFLDVMSERMRNRGMDVTTANSAKEALERVKNETFDAIIVDLLMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+E +++ DL+V+ +TG A V ++ ++ KP + L ++ + Sbjct: 61 GLEALENMKKINSDLQVILLTGNATVEKGIEAMKLGAMDLVEKPADMNSLTEKIKK 116 >gi|190574324|ref|YP_001972169.1| putative hybrid two-component system sensor histidine kinase response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012246|emb|CAQ45869.1| putative hybrid two-component system sensor histidine kinase response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 806 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + IL+AED+DD+R + + +L GY V+ ++G SA ++ E P LL +D+VMP M Sbjct: 685 ETILVAEDNDDVRAYTVDSLRLLGYRVLEAHDGPSAL-RLLERPDTRVDLLFSDVVMPGM 743 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL R+ E P++ V+F +G+ S + +L KPF DL V L Sbjct: 744 LGWELVRQVRERWPEVAVLFTSGYPRDHDQAGSQG-RAVALLPKPFTRSDLALAVRTTL 801 >gi|32476839|ref|NP_869833.1| NtrC-like response regulator SasR [Rhodopirellula baltica SH 1] gi|32447387|emb|CAD78976.1| NtrC-like response regulator SasR [Rhodopirellula baltica SH 1] Length = 491 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 58/112 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+DD RR K + + G+ V +GA A + E F + + DI MP M G+E Sbjct: 12 KILLVDDEDDYRRSCGKFMERMGHTVRLAASGAEAMSFLDREAFDVAVFDIDMPGMSGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L +R E D++V+F+TG + + L+KP L DL + V Sbjct: 72 LMQRVHEESHDVEVVFLTGKGTIEACVQAMQMGACDFLTKPCSLADLEHRVQ 123 >gi|303246211|ref|ZP_07332491.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] gi|302492274|gb|EFL52146.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] Length = 675 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDG 61 K+L+ +D++ R + LGK GYEV + +G A D V F+ +++TD+ M +DG Sbjct: 124 KLLVVDDEEIARMNMAHVLGKEGYEVRTAGDGLEALD-VLTAGFAADVVVTDLKMERLDG 182 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +EL RR PD V+ +TGFA V ++ A L KP +L +L V +L K Sbjct: 183 MELLRRLRRTAPDAAVVMVTGFATVGTAVEALRAGAAHYLGKPVNLDELKKTVREVLDAK 242 >gi|163746936|ref|ZP_02154293.1| PAS sensor Signal Tranduction Histidine Kinase [Oceanibulbus indolifex HEL-45] gi|161380050|gb|EDQ04462.1| PAS sensor Signal Tranduction Histidine Kinase [Oceanibulbus indolifex HEL-45] Length = 956 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R L L G EV +G DK++ + LL D+ +P+M G E+ Sbjct: 835 VLLCEDDALIRLDLADILDGLGTEVTETASGQETLDKLQTGHYDALLIDVGLPDMSGEEV 894 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A R + PD+ ++F TG A V P + + V+ KPF RDL + RL Sbjct: 895 ATRVRQQHPDMPIIFATGQANV---PAAETLGHCAVVQKPFGDRDLARALARL 944 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 2/105 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 + +LL EDD ++R L GY+V + + +A R++P F LL++D+VMP E+ Sbjct: 697 ETVLLVEDDAEVRDATAALLSDLGYQVRTAEDPTAALKTARQDPDFDLLVSDVVMPGELS 756 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++A PDL ++FI+G++ ++ D + L+KPF Sbjct: 757 SRDMAETLQAERPDLPILFISGYSRDSIVRDGKVDAGVQFLAKPF 801 >gi|197119046|ref|YP_002139473.1| PBPb, PAS/Hist_Kin_Sens domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088406|gb|ACH39677.1| sensor histidine kinase response regulator, PBPb, PAS and Hist_Kin_Sens domain-containing protein [Geobacter bemidjiensis Bem] Length = 1047 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEM 59 ++ ILLAEDD ++R+ + L + GYEV+ +G +K E +++L D++MP+ Sbjct: 927 SETILLAEDDAEVRKLAVSILSQYGYEVIQAVDGQDVVEKFAANREKIAMILMDMIMPKK 986 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E + L P +KV++ +G+ A + + + +++ KP +L+ +V +L Sbjct: 987 NGKEAYEEISLLQPGVKVLYSSGYTADFIQNRGVSEEGIELVMKPVQPMELLRKVREML 1045 >gi|170738597|ref|YP_001767252.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168192871|gb|ACA14818.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 640 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L G+E V +A ++ EPF L++ D+ MP M G++ Sbjct: 524 RILVVDDDPQVRHVTASFLSGFGHEAVEVPEAEAALARIEAEPFDLVVADLAMPGMTGLD 583 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA PDL + +TG A A P + A VL KPF +L V LL Sbjct: 584 LAEAVRGRRPDLPFLIVTGHAEAARIPHAYA-----VLEKPFPSGELGTRVAALL 633 >gi|116621909|ref|YP_824065.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225071|gb|ABJ83780.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 573 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 10/123 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL+ EDD +R +K L + GY ++ NGA A K + +L++TD+VMP M Sbjct: 452 DETILVVEDDASVRSVTVKMLEQLGYVALAAGNGAEALAKSKAHSGTIALVVTDVVMPNM 511 Query: 60 DGIELARRATELDPDLKVMFITGFA-AVALNP---DSNAPKNAKVLSKPFHLRDLVNEVN 115 G +LA PD+KV++++G+ +VA+ D P L+KPF+ + L + Sbjct: 512 GGCQLAAELAGTRPDIKVLYLSGYTESVAIQRGMIDGTVP----FLAKPFNRQVLAKTIR 567 Query: 116 RLL 118 +L Sbjct: 568 CVL 570 >gi|66045023|ref|YP_234864.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255730|gb|AAY36826.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 956 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 837 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 896 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L+ Sbjct: 897 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIEALAARVQELM 954 >gi|330889961|gb|EGH22622.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 836 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 717 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 776 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 777 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 835 >gi|163848361|ref|YP_001636405.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526283|ref|YP_002570754.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] gi|163669650|gb|ABY36016.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450162|gb|ACM54428.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] Length = 125 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KILL ED+ D++ AL A Y V NG A + E F LLL D++MP+MD Sbjct: 1 MSTKILLVEDEPDLQVITRMALEDAQYTVAVAGNGLEALSILDRESFDLLLIDLLMPKMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL + R + + V+ +T L+ P + KPF++ +LV+ + +L Sbjct: 61 GLELCQHLRQHPVWQHIPVLLLTANPKAHLSNHDFHPAVRGWVEKPFNVFELVDYIQSIL 120 >gi|218296276|ref|ZP_03497032.1| response regulator receiver modulated metal dependent phosphohydrolase [Thermus aquaticus Y51MC23] gi|218243348|gb|EED09878.1| response regulator receiver modulated metal dependent phosphohydrolase [Thermus aquaticus Y51MC23] Length = 315 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 46/78 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD R L++AL G EV NG A D +E+P+ L+LTD+ MP MDG+E Sbjct: 2 RVLLVDDDPFQRLLLMRALEPLGVEVSEARNGREALDLFKEKPYHLVLTDLHMPLMDGLE 61 Query: 64 LARRATELDPDLKVMFIT 81 L R DP L V +T Sbjct: 62 LTRAIKAQDPLLPVTLLT 79 >gi|114799972|ref|YP_759237.1| putative sensor histidine kinase/response regulator CckA [Hyphomonas neptunium ATCC 15444] gi|114740146|gb|ABI78271.1| putative sensor histidine kinase/response regulator CckA [Hyphomonas neptunium ATCC 15444] Length = 867 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +ILL ED+D +R L + GYEV +G A D + + P F L+++D+VMP MDG Sbjct: 743 RILLVEDEDGVRSIAATHLRQRGYEVEEACDGEEALDILTDMPGSFDLIISDVVMPGMDG 802 Query: 62 IELARRATELDPDLKVMFITGFAA--VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R A + +V+FI+G+A +A D A L KPF +R L + + L Sbjct: 803 PTLIREAKDKLGHARVIFISGYAERDLAQQLDDRA---VSFLPKPFTVRQLSERIKQEL 858 >gi|119383347|ref|YP_914403.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans PD1222] gi|119373114|gb|ABL68707.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans PD1222] Length = 680 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +LL ED+ +R F +AL G+ V+ +C A + R + +TD+VMP MDG Sbjct: 561 VLLVEDEAPVRAFASRALKLQGFHVLEAACAEDALSLLADRGLAVDVFVTDVVMPGMDGP 620 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A PD KV+F++G+A + +A L+KPF L DL V R L Sbjct: 621 AWVRTALRDRPDTKVIFMSGYAEDIFSEGRPPVPDAAFLAKPFSLSDLTALVTRQL 676 >gi|258592293|emb|CBE68602.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains (fragment) [NC10 bacterium 'Dutch sediment'] Length = 131 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD +MRR L L + G+ + NG+ A ++R + +++ D +M +M G+E Sbjct: 10 KVLVVDDDQEMRRLLEDVLTREGFRITQAANGSEALVEIRGTSYDVIVLDKIMTDMSGLE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L P+ +V+ IT F ++ L+KPF + LV V + + K Sbjct: 70 ILPEIKRLQPEAQVILITAFGDRETCVEAMGKGATAYLAKPFGMLVLVQMVKKAIEQK 127 >gi|159897869|ref|YP_001544116.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890908|gb|ABX03988.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] Length = 121 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ +R LG GY V + G A + P L+ DI+MPEMD Sbjct: 1 MTTHILVVDDEPSIRELFEDVLGDEGYVVHTVATGHQALAVYQTMPLDLIFIDIMMPEMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L RR T + P + ++ ++G V + P A L+KPF L +L+ ++ L Sbjct: 61 GITLCRRITTI-PGMTQPPIILMSGGTTVT---TIDGPYQA-FLAKPFDLTNLLQLIHTL 115 Query: 118 LT 119 L+ Sbjct: 116 LS 117 >gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] Length = 234 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QKIL+A+D+ +R L K G+EV+ +GA+A KV+ E +LL DI+MP +DG Sbjct: 5 KQKILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIMMPVLDG 64 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 IE+ ++ ++ DL ++ +T A + + D ++KPF+ R++V V Sbjct: 65 IEVCKQVRKM-SDLPIIMVTAKDDDDDRIAGLEIGADD-------YITKPFNSREVVARV 116 Query: 115 NRLL 118 +L Sbjct: 117 KAVL 120 >gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126] gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126] gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] Length = 229 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 68/115 (59%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD Sbjct: 1 MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + D +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRLQQ-EKDTYIMMMTARDSI-MDIVAGLDRGADDYIVKPFAIEELLARI 113 >gi|190892012|ref|YP_001978554.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190697291|gb|ACE91376.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 867 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + E ++++D+VMPEMDG Sbjct: 750 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALSIMEELEGKVDIVVSDVVMPEMDGP 809 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V L Sbjct: 810 TLLRELRKTYPDLKFIFVSGYAEDAFA--RNLPPDAKFGFLPKPFSLKQLAVVVKETL 865 >gi|146284227|ref|YP_001174380.1| response regulator [Pseudomonas stutzeri A1501] gi|145572432|gb|ABP81538.1| response regulator [Pseudomonas stutzeri A1501] gi|327482610|gb|AEA85920.1| response regulator [Pseudomonas stutzeri DSM 4166] Length = 126 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 +LL ED+ + L L GY+V+ ++ A++ + +P LL+TD +P + G+ Sbjct: 9 VLLVEDEPHILSLLSDYLASEGYQVLEADSAPKAFEILATKPHLDLLVTDFRLPGNVSGV 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +A A +L P+LKV+FI+G+ S ++A VL+KPF L L ++ LL Sbjct: 69 MIAEPALKLRPELKVIFISGYPIEIYESGSPIARSAPVLAKPFALDTLRCQIQELLA 125 >gi|285018154|ref|YP_003375865.1| two-component system regulatory protein [Xanthomonas albilineans GPE PC73] gi|283473372|emb|CBA15877.1| probable two-component system regulatory protein [Xanthomonas albilineans] Length = 121 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D MR+ + AL AGY V +G A + + + F+ ++TD+ MP MD Sbjct: 1 MSARILVVDDSASMRQMVSFALTSAGYAVEEAEDGQVALGRAKGQRFNAVVTDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L R +L PD K ++ +T +A + A L KPF+ L+ V ++ Sbjct: 61 GISLIRELRQL-PDYKFTPMLMLTTESAAEKKSEGKAAGATGWLVKPFNPEQLIATVQKV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|103487653|ref|YP_617214.1| periplasmic sensor hybrid histidine kinase [Sphingopyxis alaskensis RB2256] gi|98977730|gb|ABF53881.1| periplasmic sensor hybrid histidine kinase [Sphingopyxis alaskensis RB2256] Length = 658 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 8/118 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR------EEPFSLLLTDIVMPE 58 IL+ EDD + + A+ + G+ V+C+N A V + F L+LTD++MP+ Sbjct: 530 ILVVEDDARVLVATVDAVRELGHRAVACSNPLEAEALVEARIKEGQARFDLILTDVLMPD 589 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + G EL R T+ PDL V+F+TG+A A + A + VL KPF L L + R Sbjct: 590 LTGPELVARLTQRWPDLSVLFVTGYAGDA--SEGAAFGDHDVLRKPFTLSALDQAIRR 645 >gi|125973000|ref|YP_001036910.1| response regulator receiver protein [Clostridium thermocellum ATCC 27405] gi|256004797|ref|ZP_05429772.1| response regulator receiver protein [Clostridium thermocellum DSM 2360] gi|281417211|ref|ZP_06248231.1| response regulator receiver protein [Clostridium thermocellum JW20] gi|125713225|gb|ABN51717.1| response regulator receiver protein [Clostridium thermocellum ATCC 27405] gi|255991247|gb|EEU01354.1| response regulator receiver protein [Clostridium thermocellum DSM 2360] gi|281408613|gb|EFB38871.1| response regulator receiver protein [Clostridium thermocellum JW20] gi|316940764|gb|ADU74798.1| response regulator receiver protein [Clostridium thermocellum DSM 1313] Length = 120 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR + L K GYEV NGA A DK +E L++ DI MPE+ Sbjct: 1 MGKRILIVDDAAFMRMMIKDILTKNGYEVAGEAENGARAIDKYKELNPDLVIMDITMPEV 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI R +++ D K++ + A+ +S + KPF +V V ++L Sbjct: 61 DGIAAVREIKKINADSKIIMCSAMGQQAMVIESIQAGARDFIVKPFQAERVVEAVKKVL 119 >gi|323529609|ref|YP_004231761.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323386611|gb|ADX58701.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 892 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD D+R +++ L + GY+V++ ++G +A D + + P LL TD+VMP ++ Sbjct: 585 ETILVVEDDADVRLTVVEMLAQLGYKVLTASSGDAALDFINSDVPIDLLFTDVVMPGKIK 644 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ELARRA P + +F +G+ + +LSKP+ DL +V +L Sbjct: 645 SVELARRAAARSPAVPTLFTSGYTRDEIVHHGKLDAGITLLSKPYRRDDLARKVRSVL 702 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD D R L LG G + + A V + + +L TDI +P M G L Sbjct: 774 VLLVEDDADSREALSLLLGALGLDCTPVGSAEEALPLVPAQRYDILCTDITLPGMSGDNL 833 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 AR PD+ V+ ++G+ A A P A++L KPF L L E+ Sbjct: 834 ARAVRHEQPDVHVLLVSGYGAHA--PIGEPIPGARILGKPFDLAQLRREL 881 >gi|156741259|ref|YP_001431388.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232587|gb|ABU57370.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 556 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 ++L+ +D+ M + L +AGY+V++ + A + + F LLLTDI MP M G+ Sbjct: 20 RLLIVDDEQHMCDVCSRTLQRAGYDVMATIDPHVAIAALDSGQQFDLLLTDIKMPTMSGL 79 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA+ A E DP++ ++ +TG+A++ S A LSKPF L L V++ L Sbjct: 80 DLAQIAREKDPEIAIIIMTGYASLENLHQSVRRGVADFLSKPFELEQLRLAVDQAL 135 >gi|85859324|ref|YP_461526.1| two-component response regulator [Syntrophus aciditrophicus SB] gi|85722415|gb|ABC77358.1| two-component response regulator [Syntrophus aciditrophicus SB] Length = 456 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 49/81 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD MR FL L + GY+V + D+ R++ F L++TD+ MP++DGIE Sbjct: 4 ILVVDDDKGMREFLDIMLTREGYDVSCARDAGEGLDRCRKQRFDLIITDLRMPKIDGIEF 63 Query: 65 ARRATELDPDLKVMFITGFAA 85 + ++ P+ V+ IT +A+ Sbjct: 64 LKSVKDVSPESLVILITAYAS 84 >gi|298527948|ref|ZP_07015352.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511600|gb|EFI35502.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 883 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L EDD D+ ++L GY V S ++ A + + ++ P L++TD MP ++GIE Sbjct: 768 LLFVEDDQDLLETTPRSLQAMGYSVFSASSAQKALEILGQDIPLDLVITDFDMPGLNGIE 827 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLLT 119 LA++ PDL VM ITG + P N ++ LSKPF+ DL V+ +T Sbjct: 828 LAKKIQAEHPDLPVMLITG--RIQALEGIEQPDNIRLTLSKPFNQADLSQAVSTAIT 882 >gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1382 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 3/112 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +I+LA+D+ DMR ++ + L K Y+V + +G +A + +R P L+LTD++MP+++G Sbjct: 628 NARIILADDNADMREYVKRLLNKL-YQVEAVGDGMAALEAIRRHPPDLVLTDVMMPQLNG 686 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 EL + R+ L +L ++ ++ A ++ L KPF R+L+ Sbjct: 687 FELLQQLRSNPLTQELPIILLSARAGEEYLVEALEAGADDYLVKPFSARELL 738 >gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 254 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 1/110 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ ED+ + RFL L G+E S NG AY+++ +E + L+L DI++P+MDG+E+ Sbjct: 31 IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIMLPDMDGLEV 90 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 RR E+ D+ ++ +T V + ++KPF +++L+ V Sbjct: 91 CRRVREI-SDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARV 139 >gi|297568629|ref|YP_003689973.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924544|gb|ADH85354.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 817 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 N+ +LL ED+ M + + L K GY V++ N A+A E LL+TD+VMP+M Sbjct: 695 NETVLLVEDETAMLKVVELTLKKWGYTVLAANTPAAAMRLAEEHRGQVDLLITDVVMPQM 754 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELAR+ P++K +F++G+ + ++ + KPF + L ++ +L Sbjct: 755 NGRELARKLKAGYPEIKHLFMSGYNDEIIAHQGMVDESVNFIEKPFSMEVLAAKIRDVL 813 >gi|297568632|ref|YP_003689976.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924547|gb|ADH85357.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 793 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL ED++ +RR L + L + G++V+ +G A + P +L++ D+VMP+++G Sbjct: 666 ILLVEDEEQVRRVLQRVLEQQGHQVLLAVDGQEALTFFSQNPSDINLVIMDVVMPKLNGR 725 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + PDL ++ I+G+ +N + A + + KP L+N+V +L Sbjct: 726 ETGLAMRRIKPDLPIILISGYTNDVVNSEDLAAEGFHFIHKPIEPAVLINQVREVL 781 >gi|226226811|ref|YP_002760917.1| chemotaxis protein CheY homolog [Gemmatimonas aurantiaca T-27] gi|226090002|dbj|BAH38447.1| chemotaxis protein CheY homolog [Gemmatimonas aurantiaca T-27] Length = 121 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q +L+ +D MR + L +AGYEVV G A +K + L+ DIVMP+M Sbjct: 1 MSQTVLICDDAIFMRTMVGDILTQAGYEVVGEAETGIQAVEKYKHLRPDLVTMDIVMPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+ R T+ DP K++ + AL ++ + KPF ++ VNR+L Sbjct: 61 GGIDAVREITKHDPTAKILMCSAMGQQALVVEAIQAGAKDFVVKPFQPSRVLEAVNRVL 119 >gi|224417687|ref|ZP_03655693.1| two-component response regulator [Helicobacter canadensis MIT 98-5491] gi|253827036|ref|ZP_04869921.1| response regulator [Helicobacter canadensis MIT 98-5491] gi|313141230|ref|ZP_07803423.1| two-component regulator [Helicobacter canadensis MIT 98-5491] gi|253510442|gb|EES89101.1| response regulator [Helicobacter canadensis MIT 98-5491] gi|313130261|gb|EFR47878.1| two-component regulator [Helicobacter canadensis MIT 98-5491] Length = 222 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 47/86 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL EDD ++ + + L + GYEVV CN+G A K EE F LL D+++P M+ Sbjct: 1 MKAKILLLEDDMALQEIIAECLIEEGYEVVCCNDGVEASYKAYEENFDCLLLDVMVPNMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G E + E +FIT ++ Sbjct: 61 GFETLKNIRESGKQTPAIFITALNSI 86 >gi|160880387|ref|YP_001559355.1| two component AraC family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429053|gb|ABX42616.1| two component transcriptional regulator, AraC family [Clostridium phytofermentans ISDg] Length = 532 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 5 ILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++A+D++++R +I+ + G++VV +NG A + V +E LLLTDI MP + G Sbjct: 4 IVVADDEEELRSAIIRKMDWNSIGFQVVGEASNGIEALEMVEKEEPDLLLTDIRMPFLSG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IELAR+ E+ P ++ F++G+ + + L KP + DL +LL IK Sbjct: 64 IELARQVREIRPTTQIAFLSGYDDFSYAQQAIQYNVISYLLKPISMTDL---TQKLLEIK 120 Query: 122 N 122 + Sbjct: 121 D 121 >gi|32472126|ref|NP_865120.1| acetoacetate metabolism regulatory protein atoC [Rhodopirellula baltica SH 1] gi|32397498|emb|CAD72804.1| acetoacetate metabolism regulatory protein atoC [Rhodopirellula baltica SH 1] Length = 498 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL A+D+ +++ + L + GY V C +G +A D + +EP LL D+ MP M GIE+ Sbjct: 52 ILFADDEPQLQKLMGTELPRMGYRVTVCPDGPTAVDVLSKEPIDCLLVDLDMPGMSGIEV 111 Query: 65 ARRATELDPDLKVMFITG 82 RA E+ P+++ + +TG Sbjct: 112 IARAREIRPEIEAVIMTG 129 >gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ ED+ + R L L GY+V +NG A + R + L+L D+++P M Sbjct: 1 MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIEL RR D V+ +T ++V ++KPF + +L+ + L + Sbjct: 61 GIELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRL 120 Query: 121 KN 122 + Sbjct: 121 QG 122 >gi|170692837|ref|ZP_02883999.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170142493|gb|EDT10659.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 807 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 3/107 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD D + + L G++ V + A + +PF +L+TD+ MP M G+E Sbjct: 695 RLLLVDDDIDTSEAIGELLKLVGHDPVVTGSPQEALRLLEAQPFDVLITDLSMPVMPGLE 754 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LA+RAT+L P L+V+F +G A++ P L KP+ + +L Sbjct: 755 LAQRATQLRPTLRVIFASGHEMPAVD---TLPFRWGALRKPYSIDEL 798 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD D++ ++ L GY V+ N+ A VR LL TD+VMP + Sbjct: 527 ETILVVEDDKDVQSTVVDTLSGLGYSVLKANDAEQALAVVRSGVHIDLLFTDVVMPGPLR 586 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +A ++ P LKV+F +G+ A+ ++LSKP+ L ++ ++L + Sbjct: 587 SPAMVAQAVQMLPRLKVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREQLAYKIRQILGV 646 >gi|170738994|ref|YP_001767649.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168193268|gb|ACA15215.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 864 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R + + L GY V +G + + P L++TD+ +P ++G ++ Sbjct: 741 ILVVEDDPTVRALIAETLSDRGYRVREAADGPAGLAALEAAPVDLVVTDVGLPGLNGRQM 800 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A PDL+V+FITG+A A + +++KPF + L +V +L Sbjct: 801 IDQARGARPDLRVLFITGYAENAAFGGGHLEAGMAMITKPFAIEALAAKVQAIL 854 >gi|298488291|ref|ZP_07006323.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157113|gb|EFH98201.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 695 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY ++ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEPAVRLLIAELLEDLGYTILQAERGADALTILQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 692 >gi|225562|prf||1306301A spo0F gene Length = 123 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D +R L + K GY+ NG A D V +E L+L D+ +P MD Sbjct: 2 MNEKILV-DDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +D +++V+ +T + + + +S +KPF + ++ + V + L + Sbjct: 61 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|218130333|ref|ZP_03459137.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697] gi|217987512|gb|EEC53841.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697] Length = 1331 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ KAGY + SC NG A +RE L+++DI+MPEM G Sbjct: 1079 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMTGD 1137 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + +L+V I AL + N + K + KPF + L V + Sbjct: 1138 EL---CSIIKGNLEVSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNI 1194 Query: 118 L 118 L Sbjct: 1195 L 1195 >gi|186473562|ref|YP_001860904.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195894|gb|ACC73858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 781 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD+++ + + +G GY S + A + EE F +L+TD+ MP + G+E Sbjct: 669 RILIVDDDENLSEAISEQIGVLGYTRKSTTSAHEALQWLSEETFDVLMTDLRMPGLGGVE 728 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHLRDL 110 LA+RA + P L V+F +G+ DS A P L KPF + +L Sbjct: 729 LAKRAVAIRPALHVLFSSGYDMT----DSPAMPFRWASLRKPFTVEEL 772 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD ++ I L GY V+ ++ A +R LL +D+VMP + Sbjct: 529 ETILVVEDDRKVQSTAIDTLTGLGYRVLKADDAQQALTVLRSGVDVDLLFSDVVMPGPIR 588 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A +AT L P +KV+F +G+ A+ ++LSKP+ L ++ ++L Sbjct: 589 STDMAAQATLLLPRMKVLFTSGYTHNAIVHGGRLDPGVELLSKPYSRDQLARKIRQML 646 >gi|94496512|ref|ZP_01303088.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. SKA58] gi|94423872|gb|EAT08897.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. SKA58] Length = 807 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 ILL ED+D +R +AL + GY V++ N+G + + + LL++D+VMP MDG Sbjct: 687 ILLVEDEDMVRAVAERALTRQGYTVLTANDGEQGLEVLAAHDGIDLLISDVVMPNMDGPA 746 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RA P L V+F++G+A L + N L KPF + L Sbjct: 747 MVARARVSHPHLPVLFMSGYAEEQLRKSIDI-ANVAFLPKPFSVNQL 792 >gi|325109622|ref|YP_004270690.1| Fis family transcriptionel regulator [Planctomyces brasiliensis DSM 5305] gi|324969890|gb|ADY60668.1| two component, sigma54 specific, transcriptional regulator, Fis family [Planctomyces brasiliensis DSM 5305] Length = 462 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 64/117 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+A+D+ R + L AGYE V +G A +K+R E F L+L+D+ MP + Sbjct: 4 RRILIADDEPLYLRTTGQLLKNAGYECVCVPDGEQALEKLRTESFDLILSDLNMPGNLKL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL ++ PD+ ++ ITG ++ +S A L KP DL+ VNR+L+ Sbjct: 64 ELLQQGRSGWPDIPLIVITGVPSLPTAIESIRLGIADYLLKPVKFEDLLASVNRVLS 120 >gi|66044548|ref|YP_234389.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255255|gb|AAY36351.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 695 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEPAVRLLITELLEDLGYIVLQAERGADALTILQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 692 >gi|56965642|ref|YP_177376.1| stage 0 sporulation protein F [Bacillus clausii KSM-K16] gi|56911888|dbj|BAD66415.1| stage 0 sporulation protein F [Bacillus clausii KSM-K16] Length = 120 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 60/110 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+ +D +R L + L K GYE+ +G A EE ++L D+ +P MD Sbjct: 1 MSHKVLIVDDQFGIRVLLTEVLQKDGYEMFQAASGKEALAIQEEEEIDIVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE+ ++ E P +KV+ +T + + L ++ ++KPF ++++ Sbjct: 61 GIEILKKLKEKQPGIKVIMMTAYGELNLVNEAMDHGAVSYMAKPFDIQEV 110 >gi|118581567|ref|YP_902817.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] gi|118504277|gb|ABL00760.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] Length = 128 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMD 60 + IL AEDDD +R+ + K L + GY ++ NG A + + LL+ D++MP+M+ Sbjct: 10 KTILHAEDDDLVRKLMAKTLSRMGYMLIPAVNGQDAVAQFITHRQEIQLLVLDLIMPKMN 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E +L P++K +F + L + + SKP ++ L ++ +L Sbjct: 70 GLEALNEIRKLQPEIKAIFCSACPEAILQTRDSLGDGVAIFSKPVNMIQLTGKIREML 127 >gi|330982192|gb|EGH80295.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 380 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + LG+ GY + + A + + LL++D+ +P M+G Sbjct: 262 ETVLIVEDDPAVRTLVSEVLGELGYTFIEAGEASDAVPILESGQRIDLLISDVGLPGMNG 321 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 322 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 378 >gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 224 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + L + GY V N +AY+ ++ E F L+L+DI+MP++DG + Sbjct: 3 KILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYELLQSEQFDLVLSDIMMPQVDGYQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ DP + ++FIT +A + KP + +L+ + LL Sbjct: 63 FAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALL 117 >gi|289673820|ref|ZP_06494710.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 440 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + LG+ GY + + A + + LL++D+ +P M+G Sbjct: 322 ETVLIVEDDPAVRTLVSEVLGELGYTFIEAGEASDAVPILESGQRIDLLISDVGLPGMNG 381 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 382 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 438 >gi|258405063|ref|YP_003197805.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797290|gb|ACV68227.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 803 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEM 59 + IL+ +D+ D+ +AL GY V NG A Y K EE L++ D+ MP M Sbjct: 686 ETILIVDDEKDILELTAEALEIQGYTVYMAENGEQALAMYSKY-EESIDLVILDLNMPGM 744 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G R+ +L P +KV+ +G++A A + + + KP+HLR+L+ + R+++ Sbjct: 745 GGASCLRQLKKLQPSIKVILASGYSAHG-QAQEIADRASAFIGKPYHLRELLKTIRRVIS 803 >gi|187921731|ref|YP_001890763.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187720169|gb|ACD21392.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1646 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL EDD+++R +++ L GY V+ + SA V P +L TD+VMP + Sbjct: 1375 ETILAVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDMLFTDVVMPGPLR 1434 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELAR+A E P + V+F +G+ A+ + ++LSKP+ L +V +L Sbjct: 1435 STELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALARKVRYVLQA 1494 Query: 121 KN 122 +N Sbjct: 1495 QN 1496 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 55/109 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ +R + L ++++ A + E S++LTD+ + G++ Sbjct: 1531 RILLVEDDELIRVSTAELLRTFDFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1590 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 LA PDL+V+F+TG+ V +A ++ KP+ DL++ Sbjct: 1591 LALDVCRERPDLRVIFLTGYDLVLTPAQRAVLPHAMLMRKPYDPLDLID 1639 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R ++ + L AG++V ++G +A + R E L+L+D++MP +DG Sbjct: 659 RLLVVDDNADLREYMSRILRAAGHDVRLASDGQAALEAARAEAPDLVLSDVMMPRLDGFG 718 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L RA DP L+ V+ ++ A D L+KPF R+L+ V+ Sbjct: 719 LL-RALRADPHLRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVS 772 >gi|218779291|ref|YP_002430609.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760675|gb|ACL03141.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 858 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 Q++L+ +D+ + L + L GY + N+ +A + ++ +P F+L+++D+ MP + Sbjct: 736 GQEVLVVDDEGTVANMLGQMLKNLGYISTAANDSLTALELIQADPQKFALVISDLTMPTL 795 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+ELA++A EL+P+L + +G + S +P +L KP L VN +L Sbjct: 796 TGVELAKKAAELNPNLPFILSSGLGDGVIGKASESPNIKDILHKPVTRSVLGRVVNAVLN 855 Query: 120 IKN 122 +N Sbjct: 856 PEN 858 >gi|323136429|ref|ZP_08071511.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylocystis sp. ATCC 49242] gi|322398503|gb|EFY01023.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylocystis sp. ATCC 49242] Length = 492 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ +IL+A+DD +R + +AL +AGYEV + A+ + V+ L++TD+VMP+ Sbjct: 1 MNRGEILVADDDSAIRTVVAQALSRAGYEVRTTGTAATLWRWVQSGEGDLVVTDVVMPDE 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + EL R +L P+L ++ ++ ++ L KPF L++LV V R + Sbjct: 61 NAFELLPRIKKLRPELPIIVMSAQNTFMTAIRASERGAYDYLPKPFDLKELVGIVGRAM 119 >gi|289646223|ref|ZP_06477566.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867541|gb|EGH02250.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 698 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY ++ GA A ++ + LL+TD+ +P M Sbjct: 577 DETILVVDDEPAVRLLIAELLEDLGYTILQAERGADALTILQSKAAIDLLITDVGLPGGM 636 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 637 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 695 >gi|288958644|ref|YP_003448985.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910952|dbj|BAI72441.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 736 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL +D++ +RR+L L +AG VV +G A ++ E F +++D+ MP M+G Sbjct: 619 ILLVDDEESVRRYLRLVLEEAGCVVVEAADGREALERYDEAGGLFDAVVSDVSMPRMNGP 678 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 +LAR L+P L ++F+TG+A+ + A + +++ KP Sbjct: 679 DLARALEALNPHLPILFLTGYASRGMAAGLTAREGREIVMKP 720 >gi|218531234|ref|YP_002422050.1| Fis family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218523537|gb|ACK84122.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacterium chloromethanicum CM4] Length = 450 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++I+ +D++D+RR ++L G+EV + G A +R EP +++TD+ +P +DG Sbjct: 9 SERIVFIDDEEDVRRANRQSLELDGFEVETFEAGEPALAAIRAEPPGVVVTDVRLPGLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R DPDL V+ ITG +++ + L+KP+ L+ V R L Sbjct: 69 RALLERIQAEDPDLPVILITGHGDISMAVAAMRSGAYDFLAKPYPAEALMGSVRRAL 125 >gi|170740093|ref|YP_001768748.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194367|gb|ACA16314.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1165 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +GA+ ++R E LL+TD+ +P M+ Sbjct: 1013 ETVLVVDDEASVRLLVAEVLQDLGYRALEARDGAAGLAQLRAEGRIDLLVTDVGLPGGMN 1072 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA L PDLKV+FITG+A + + +VL+KPF L +L + ++ Sbjct: 1073 GRQLADAGRVLRPDLKVLFITGYAETTVVGAGDLQPGMEVLTKPFVLEELARRIRGMI 1130 >gi|148265399|ref|YP_001232105.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398899|gb|ABQ27532.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 461 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 3/105 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFS--LLLTDIVMPEMD 60 K+ + +D+++MRR+L K L G+ V + G + +++ REE + +LL DI MPE+D Sbjct: 6 KVYICDDEEEMRRYLRKILHSHGFTVETFAGGGALLERLEREENGAPDILLQDIRMPELD 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 GIE+ +R +L P L V+ +TG+ + ++ ++KPF Sbjct: 66 GIEVLKRVRKLRPSLPVVIMTGYGTIDSAVEAIKLGAYDYITKPF 110 >gi|332292664|ref|YP_004431273.1| two component, sigma54 specific, transcriptional regulator, Fis family [Krokinobacter diaphorus 4H-3-7-5] gi|332170750|gb|AEE20005.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Krokinobacter diaphorus 4H-3-7-5] Length = 387 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K L + Y+V +G +K+REE + L+L DI MP+MDG Sbjct: 3 KILIIEDEAAIRRVLTKILSEESKDYQVEEAADGLEGINKIREEDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ A +L P+ ++ I+G + ++ +SKP L L+N V L Sbjct: 63 VEVLEAARKLKPETPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 119 >gi|144898538|emb|CAM75402.1| response regulator receiver domain protein (CheY [Magnetospirillum gryphiswaldense MSR-1] Length = 124 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 +IL+ ED MR L+ L + +EVV+ NGA A + + + F L++TDI+MPEMDG Sbjct: 2 SRILIVEDTRLMRDSLVDVLTELDHEVVTAENGAEAVNMIAAGQVFDLIITDIIMPEMDG 61 Query: 62 IELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNA-KVLSKPFHLRDLVNEVN 115 IE + P+ ++ I+G +A A D+ A VL KPF + L+ + Sbjct: 62 IEAIMEVQTMSPETPIIAISGGSARLEKAAGLDTAKRLGAVAVLEKPFEIDSLLAAIQ 119 >gi|297171130|gb|ADI22141.1| HD-GYP domain [uncultured myxobacterium HF0200_19H16] Length = 496 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 65/115 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ + + + L GY V + +A D+++ EPF ++LTD+ MP+MDGIE Sbjct: 13 RVLVVDDEEAVLDIVNEFLVLEGYYVKPVGSARAALDQLKTEPFDVILTDLKMPDMDGIE 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R + +PD ++ +TGF V ++ + KPF D+V + R L Sbjct: 73 LIQRIRDWNPDPVLVMMTGFGTVETAIEAMKLGAFDYILKPFKPDDVVAVLKRAL 127 >gi|94967551|ref|YP_589599.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94549601|gb|ABF39525.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 751 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ ED++ +RR I L + GY V++ NG A A + P L++TD++MPEM G Sbjct: 625 ILVVEDEEPVRRLAIAGLQERGYTVLAAANGREALAVIAAQNRPVDLIVTDVIMPEMGGR 684 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL P +KV+F++G+ +L + A A ++ KPF L +V +L Sbjct: 685 ELFDVLKRDYPGVKVLFMSGYTDRSL-AELGAELEASLMPKPFTPTALAQKVGDIL 739 >gi|320352967|ref|YP_004194306.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121469|gb|ADW17015.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 541 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL+ +D+ + +L L + GY + CN+G+SA P F L++TD MP Sbjct: 418 DESILVVDDEQMVADYLKGFLEQLGYRITICNDGSSALALFEHNPQAFDLVITDQTMPGK 477 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 G E+AR L PDL ++ +G+++ AL+P+ A + + KP L DL + +L Sbjct: 478 TGFEMARNMLALRPDLPIILCSGYSS-ALSPERVAKAGIREFMMKPVSLHDLAPVIRAVL 536 >gi|289625879|ref|ZP_06458833.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 695 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY ++ GA A ++ + LL+TD+ +P M Sbjct: 574 DETILVVDDEPAVRLLIAELLEDLGYTILQAERGADALTILQSKAAIDLLITDVGLPGGM 633 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 634 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 692 >gi|229525700|ref|ZP_04415105.1| response regulator [Vibrio cholerae bv. albensis VL426] gi|229339281|gb|EEO04298.1| response regulator [Vibrio cholerae bv. albensis VL426] Length = 447 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++D+ + L + L + Y VV+ +NGA A + ++E P ++++D+ MPEMDG + Sbjct: 13 VLLLDDENDILKALNRVL-RMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ PD + +TG+A + + NA +SKP+ Sbjct: 72 LAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|86156845|ref|YP_463630.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773356|gb|ABC80193.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 474 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 64/115 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D +MR L +AG+ V +GASA +V+ E F ++LTD+ MP +DG+E Sbjct: 23 KVLVVDDQKNMRATTAILLRQAGHAVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGME 82 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + P+ +V+ +T + + ++ L+KPF +++ V++ L Sbjct: 83 VLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVSKAL 137 >gi|310818045|ref|YP_003950403.1| Fis family two component transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309391117|gb|ADO68576.1| Two component transcriptional regulator, Fis family [Stigmatella aurantiaca DW4/3-1] Length = 461 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + L+A+DD+ MR L L G EV +G +A +++R+E + LL++D+ MP MD Sbjct: 1 MKIRALVADDDNAMRYTLRGILDDLGMEVDEAPHGVAALERIRQESYHLLISDLRMPHMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+EL R T P KV+ IT + ++ KPF + +LV + R ++ Sbjct: 61 GLELLRHLTGSLP--KVILITAHGSERHAVEAMKAGAYDYFHKPFEVDELVAVIQRAVS 117 >gi|170742954|ref|YP_001771609.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197228|gb|ACA19175.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 701 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---DKVREEPFSLLLTDIVMPEM 59 + +L+ EDD +RR + +G+ GY ++ +GA+A D R+ ++L TD+VMP + Sbjct: 579 RTVLVVEDDAMVRRASAETIGELGYRTITAPDGAAALACLDSNRD--VAVLFTDVVMPGL 636 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 DG LA A PDLKV+F TG VL KPF + DL Sbjct: 637 DGPSLAAEARRRRPDLKVVFATGHGREEGREGPLPGPGETVLRKPFTIEDL 687 >gi|302341503|ref|YP_003806032.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301638116|gb|ADK83438.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 135 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 61/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ L K LGK G EV + ++G +A +R F + D+ M +MDGIE Sbjct: 9 RLLLVDDEHGYLEVLSKRLGKRGVEVTTASSGEAAIRLLRRNEFDAAVVDLKMEDMDGIE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + + ++DPD+ V+ +TG + D L+KP L +L++++ + Sbjct: 69 VLKVFKKMDPDMAVIILTGHGSEQAARDGMRQGAHDYLTKPCELSELLDKIQQ 121 >gi|220903304|ref|YP_002478616.1| response regulator receiver protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867603|gb|ACL47938.1| response regulator receiver protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 135 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 63/112 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL +D++++ R L K LG+ GYE + NG A + + + + +++ D+ MP MDG+ Sbjct: 4 KKILLVDDEEEVTRILAKRLGRRGYECATAANGQLALNAMEDTAYHVVIMDVKMPVMDGM 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ L P +V+ ++G A + L + + L KP L +L+ ++ Sbjct: 64 SALQKIHRLWPCTQVILLSGHADMQLAVQAMSEGAFGYLMKPVDLDELLFKI 115 >gi|145219838|ref|YP_001130547.1| PAS/PAC sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145206002|gb|ABP37045.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 525 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ R L G+ V++ ++ A + R LLLTD++MP M+G Sbjct: 403 VLVVEDEADILRLCAFVLRGEGFTVLTASSPFEALEVARRHAAGIDLLLTDVIMPAMNGG 462 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L R E P L+ +F++G+ A + A + L KPF +R+L +V +L + Sbjct: 463 DLHRALLETYPALRAVFMSGYTADIIGEKGVAGEGLNFLQKPFSVRNLTGKVQEVLDL 520 >gi|149188083|ref|ZP_01866378.1| Response regulator [Vibrio shilonii AK1] gi|148838071|gb|EDL55013.1| Response regulator [Vibrio shilonii AK1] Length = 471 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE V + A K++ +P ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWVEADCAEDALVKLKTQPVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRNIKQHWPNLPVLLMTAYANIEDAVAAMKEGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|296445825|ref|ZP_06887777.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296256653|gb|EFH03728.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 839 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 13/119 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ILL ED+D +R F +AL GY V+ ++G A + V E L+++D+VMPEMDG Sbjct: 723 SILLVEDEDAVRAFAARALVSRGYSVLEASSGLEALEVVEREGTRIDLIVSDVVMPEMDG 782 Query: 62 ----IELARRATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVN 115 EL +R KV+F++G+A A N P+ + L KPF L+ L+ V Sbjct: 783 PAMFAELRKRGV----TAKVVFVSGYAEEAFA--KNLPEGDFGFLPKPFSLKQLIETVK 835 >gi|118591526|ref|ZP_01548923.1| two component response regulator [Stappia aggregata IAM 12614] gi|118435854|gb|EAV42498.1| two component response regulator [Stappia aggregata IAM 12614] Length = 444 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q +LL +D+ D+R L + L +G V + A +++ + +L+TDI MP Sbjct: 1 MDQATVLLIDDEADLRGSLSQGLELSGQAVFATGEPDEALERINRGFYGVLVTDIRMPGT 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG ++ +RA E+DP L V+ ITG V L ++ + KPF + L + V R L Sbjct: 61 DGFQVMKRAFEIDPALPVVLITGHGDVPLAVEAMRAGAYDFMEKPFSVSRLASVVERAL 119 >gi|153213552|ref|ZP_01948842.1| response regulator [Vibrio cholerae 1587] gi|229520480|ref|ZP_04409905.1| response regulator [Vibrio cholerae TM 11079-80] gi|297578690|ref|ZP_06940618.1| response regulator [Vibrio cholerae RC385] gi|124115888|gb|EAY34708.1| response regulator [Vibrio cholerae 1587] gi|229342578|gb|EEO07571.1| response regulator [Vibrio cholerae TM 11079-80] gi|297536284|gb|EFH75117.1| response regulator [Vibrio cholerae RC385] Length = 447 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++D+ + L + L + Y VV+ +NGA A + ++E P ++++D+ MPEMDG + Sbjct: 13 VLLLDDENDILKALNRVL-RMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ PD + +TG+A + + NA +SKP+ Sbjct: 72 LAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|330972557|gb|EGH72623.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 169 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M Sbjct: 49 GETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGM 108 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A E+ P LK +FITG+A A D +VL+KPF + L V L+ Sbjct: 109 NGRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIEALAARVQELM 167 >gi|330952828|gb|EGH53088.1| PAS protein [Pseudomonas syringae Cit 7] Length = 366 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M Sbjct: 246 GETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGM 305 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 306 NGRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 365 >gi|168699248|ref|ZP_02731525.1| response regulator receiver domain protein (CheY-like) [Gemmata obscuriglobus UQM 2246] Length = 406 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+D R L + LG G++ V NG A D VR PF L+L DI+MPE+DG Sbjct: 161 KRILVVEDNDANRVMLCRRLGSRGFQTVEAANGREALDAVRRAPFDLVLCDIMMPEVDGY 220 Query: 63 ELARR 67 E+ R+ Sbjct: 221 EVLRQ 225 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ R + L + GY V+ + G A R E ++L D+ +P++DG E Sbjct: 4 VLLVEDEQVNREMFRRRLERKGYTVLPADTGLGAVALARSERPDVILMDLGLPDIDGWEA 63 Query: 65 ARR 67 RR Sbjct: 64 TRR 66 >gi|26990257|ref|NP_745682.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985205|gb|AAN69146.1|AE016548_5 sensory box histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 553 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPE-MDG 61 K++L ED+ +R +++ L G+EV + +G AY ++E P LL+TD+ +P +DG Sbjct: 430 KVMLVEDEPALRLVMLEVLLDQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDG 489 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + P V+ ITG+ + + ++L+KPF L+ L + RLL Sbjct: 490 YQLADACRGIAPHAAVLLITGYDLAHSTAKARPHRRTELLAKPFDLQALAQALERLL 546 >gi|103487212|ref|YP_616773.1| periplasmic sensor hybrid histidine kinase [Sphingopyxis alaskensis RB2256] gi|98977289|gb|ABF53440.1| multi-sensor hybrid histidine kinase [Sphingopyxis alaskensis RB2256] Length = 793 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 ILL ED+D +R +AL +AGY VV+ G ++ E L+++D+VMP MDG Sbjct: 669 ILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVVMPTMDGSA 728 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R P L V+F++G+A L + N L KPF + L + L Sbjct: 729 MVRAMRARRPGLPVLFMSGYAEEQLRQSIDI-DNVSFLPKPFSVAQLAEATSAAL 782 >gi|302036150|ref|YP_003796472.1| transcriptional regulatory protein pilR [Candidatus Nitrospira defluvii] gi|300604214|emb|CBK40546.1| Transcriptional regulatory protein pilR [Candidatus Nitrospira defluvii] Length = 459 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ +R L L +AGY V ++G A +V++E F L++TD+ MP + G+ Sbjct: 2 EKILVVDDEQGLRDVLSIMLKRAGYVVTVASDGDEAIAQVQKEIFDLVITDLKMPRVGGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ + PD V+ IT FA+ ++ L+KPF V+EV L I+N Sbjct: 62 EVLKAVKAASPDTVVLMITAFASADSAVEAMKHGAYDYLTKPFQ----VDEVQ--LIIRN 115 >gi|218528133|ref|YP_002418949.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520436|gb|ACK81021.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 837 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 9/118 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL+ ED+ ++ RF + L G+ V N +A D V++ F + +D+VMP M GI Sbjct: 719 ILVVEDNLEVGRFCTQILEDLGHSPVWTQNAEAALDAVKKSASDFDAVFSDVVMPGMGGI 778 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELARR + PDL V+ +G++ V D++ VL KP+ +E+ R+L + Sbjct: 779 ELARRLRDSHPDLPVVLTSGYSHVLAQDDAHG---FDVLRKPYS----ADELARVLRV 829 >gi|320325187|gb|EFW81255.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 956 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 837 ETILIVDDEPTVRMLLTDALGDLGYTLIEAVDSLAGLKLLRSDVHIDLLITDVGLPGGMN 896 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 897 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 955 >gi|312880454|ref|ZP_07740254.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310783745|gb|EFQ24143.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 817 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGI 62 +LLAED+ +R + + L G EV+ N A A + R++ LLL+D+V+P+++G Sbjct: 697 VLLAEDEPAVRGLVERILRGRGLEVLVAENARQAEALFRERKDQVQLLLSDVVLPDLNGK 756 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R + PDL V+F +G+ + L KPF RDLV +V L Sbjct: 757 ELHERLLAIRPDLPVLFTSGYHEDVIAHRGVLDPGVLFLPKPFTARDLVAKVREAL 812 >gi|301059424|ref|ZP_07200345.1| putative Response regulator PleD [delta proteobacterium NaphS2] gi|300446460|gb|EFK10304.1| putative Response regulator PleD [delta proteobacterium NaphS2] Length = 312 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 12/123 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ R+ + K L +AGY VVS NG A+ +E F ++LTD MPEMDG+EL Sbjct: 7 ILIAEDNAVSRKLMEKTLRQAGYAVVSAANGREAFKIFKERFFPIILTDWGMPEMDGLEL 66 Query: 65 AR--RATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R R + + + ITG + V L ++ L+KPF +L+ + Sbjct: 67 CRAIRENPTEGYVFIFLITGRDSRKDIIVGLEAGAD-----DYLTKPFDRSELIARLKTA 121 Query: 118 LTI 120 L I Sbjct: 122 LRI 124 >gi|219849932|ref|YP_002464365.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219544191|gb|ACL25929.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 304 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 3/106 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +DD +RR + AL + YEV ++ +A + +P LL+TD++MP M Sbjct: 1 MPKRILIVDDDPQIRRLVTLALTDETSYEVSDVSSAEAALLHISRQPVDLLVTDLLMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKP 104 GIEL +R +LDP+ ++ T + L+P A VLSKP Sbjct: 61 SGIELIQRVRQLDPNTAIVVFT-ISPEGLSPQLQAELQIDYVLSKP 105 >gi|193214405|ref|YP_001995604.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087882|gb|ACF13157.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1487 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + ILL ED+ +R + K L GY + NG A D ++ + LLLTD+VMP+M Sbjct: 1370 ETILLVEDEAFIREVISKGLTDLGYTIFDAANGEEALDISKKYGQKIDLLLTDVVMPKMS 1429 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL+ + P+LKV++++G+ A+ + + KPF + L + +L Sbjct: 1430 GKELSDKIMADRPNLKVVYMSGYTDTAIVNHGVLEEGTLFIQKPFAIPMLAKFIREVL 1487 >gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 231 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A + +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E+ + R E D+ VM IT + L D ++KPF +R+L+ Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADD-------YITKPFSIRELMA 115 Query: 113 EVNRLL 118 V LL Sbjct: 116 RVKALL 121 >gi|150024761|ref|YP_001295587.1| sigma-54 dependent two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] gi|149771302|emb|CAL42771.1| Probable sigma-54 dependent two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] Length = 387 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K L + Y V +G +K++ E + L+L DI MP+MDG Sbjct: 3 KILIIEDEPAIRRVLTKILSEESDTYIVSQAEDGLQGLEKIKNEDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ A ++ P+++++ I+G A + ++ +SKP L L+N V L Sbjct: 63 VEVLEAAKKIKPEIQMVMISGHADLETAVNTMRLGAYDYISKPPDLNRLLNTVRNAL 119 >gi|190574211|ref|YP_001972056.1| putative two-component response regulator chemotaxis protein CheY [Stenotrophomonas maltophilia K279a] gi|194365630|ref|YP_002028240.1| response regulator receiver protein [Stenotrophomonas maltophilia R551-3] gi|254521672|ref|ZP_05133727.1| chemotaxis response regulator [Stenotrophomonas sp. SKA14] gi|190012133|emb|CAQ45756.1| putative two-component response regulator chemotaxis protein CheY [Stenotrophomonas maltophilia K279a] gi|194348434|gb|ACF51557.1| response regulator receiver protein [Stenotrophomonas maltophilia R551-3] gi|219719263|gb|EED37788.1| chemotaxis response regulator [Stenotrophomonas sp. SKA14] Length = 121 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D MR+ + AL AG+ V +GA A + + + F+ ++TD+ MP MD Sbjct: 1 MSARILVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L R +L PD K ++ +T +A + A L KPF+ LV V ++ Sbjct: 61 GIALIRELRQL-PDYKFTPLLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLVATVQKV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|147674084|ref|YP_001216556.1| response regulator [Vibrio cholerae O395] gi|262170286|ref|ZP_06037973.1| response regulator [Vibrio cholerae RC27] gi|146315967|gb|ABQ20506.1| response regulator [Vibrio cholerae O395] gi|227012903|gb|ACP09113.1| response regulator [Vibrio cholerae O395] gi|262021301|gb|EEY40015.1| response regulator [Vibrio cholerae RC27] Length = 447 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++D+ + L + L + Y VV+ +NGA A + ++E P ++++D+ MPEMDG + Sbjct: 13 VLLLDDENDILKALNRVL-RMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ PD + +TG+A + + NA +SKP+ Sbjct: 72 LAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|15641100|ref|NP_230732.1| response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587052|ref|ZP_01676829.1| response regulator [Vibrio cholerae 2740-80] gi|121726240|ref|ZP_01679530.1| response regulator [Vibrio cholerae V52] gi|153802307|ref|ZP_01956893.1| response regulator [Vibrio cholerae MZO-3] gi|153816975|ref|ZP_01969642.1| response regulator [Vibrio cholerae NCTC 8457] gi|153821865|ref|ZP_01974532.1| response regulator [Vibrio cholerae B33] gi|153824970|ref|ZP_01977637.1| response regulator [Vibrio cholerae MZO-2] gi|153828132|ref|ZP_01980799.1| response regulator [Vibrio cholerae 623-39] gi|227081260|ref|YP_002809811.1| response regulator [Vibrio cholerae M66-2] gi|229505316|ref|ZP_04394826.1| response regulator [Vibrio cholerae BX 330286] gi|229511014|ref|ZP_04400493.1| response regulator [Vibrio cholerae B33] gi|229515471|ref|ZP_04404930.1| response regulator [Vibrio cholerae TMA 21] gi|229518135|ref|ZP_04407579.1| response regulator [Vibrio cholerae RC9] gi|229529821|ref|ZP_04419211.1| response regulator [Vibrio cholerae 12129(1)] gi|229608335|ref|YP_002878983.1| response regulator [Vibrio cholerae MJ-1236] gi|254225484|ref|ZP_04919094.1| response regulator [Vibrio cholerae V51] gi|254291512|ref|ZP_04962303.1| response regulator [Vibrio cholerae AM-19226] gi|254848216|ref|ZP_05237566.1| response regulator [Vibrio cholerae MO10] gi|255745501|ref|ZP_05419449.1| response regulator [Vibrio cholera CIRS 101] gi|262158424|ref|ZP_06029540.1| response regulator [Vibrio cholerae INDRE 91/1] gi|262192640|ref|ZP_06050785.1| response regulator [Vibrio cholerae CT 5369-93] gi|298498807|ref|ZP_07008614.1| response regulator [Vibrio cholerae MAK 757] gi|9655555|gb|AAF94246.1| response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548687|gb|EAX58736.1| response regulator [Vibrio cholerae 2740-80] gi|121631186|gb|EAX63559.1| response regulator [Vibrio cholerae V52] gi|124122132|gb|EAY40875.1| response regulator [Vibrio cholerae MZO-3] gi|125621954|gb|EAZ50278.1| response regulator [Vibrio cholerae V51] gi|126512562|gb|EAZ75156.1| response regulator [Vibrio cholerae NCTC 8457] gi|126520573|gb|EAZ77796.1| response regulator [Vibrio cholerae B33] gi|148876374|gb|EDL74509.1| response regulator [Vibrio cholerae 623-39] gi|149741482|gb|EDM55512.1| response regulator [Vibrio cholerae MZO-2] gi|150422576|gb|EDN14532.1| response regulator [Vibrio cholerae AM-19226] gi|227009148|gb|ACP05360.1| response regulator [Vibrio cholerae M66-2] gi|229333595|gb|EEN99081.1| response regulator [Vibrio cholerae 12129(1)] gi|229344850|gb|EEO09824.1| response regulator [Vibrio cholerae RC9] gi|229347240|gb|EEO12200.1| response regulator [Vibrio cholerae TMA 21] gi|229350979|gb|EEO15920.1| response regulator [Vibrio cholerae B33] gi|229357539|gb|EEO22456.1| response regulator [Vibrio cholerae BX 330286] gi|229370990|gb|ACQ61413.1| response regulator [Vibrio cholerae MJ-1236] gi|254843921|gb|EET22335.1| response regulator [Vibrio cholerae MO10] gi|255736576|gb|EET91973.1| response regulator [Vibrio cholera CIRS 101] gi|262029865|gb|EEY48513.1| response regulator [Vibrio cholerae INDRE 91/1] gi|262031487|gb|EEY50080.1| response regulator [Vibrio cholerae CT 5369-93] gi|297543140|gb|EFH79190.1| response regulator [Vibrio cholerae MAK 757] gi|327483796|gb|AEA78203.1| response regulator [Vibrio cholerae LMA3894-4] Length = 447 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++D+ + L + L + Y VV+ +NGA A + ++E P ++++D+ MPEMDG + Sbjct: 13 VLLLDDENDILKALNRVL-RMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ PD + +TG+A + + NA +SKP+ Sbjct: 72 LAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|153809460|ref|ZP_01962128.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185] gi|149127920|gb|EDM19142.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185] Length = 1338 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ L + GY + SC NG A +RE L+++DI+MPEM G Sbjct: 1078 QRILIVEDNDDLRNYLVDML-RTGYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMGGD 1136 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + DL++ I AL + + + ++ ++KPF + L + + Sbjct: 1137 EL---CATIKGDLEMSHIPVVLLTALGDEKHMLEGLEIGADAYITKPFSVGILKATIKNI 1193 Query: 118 LT 119 LT Sbjct: 1194 LT 1195 >gi|194337171|ref|YP_002018965.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309648|gb|ACF44348.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1124 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMD 60 + IL+ +D++++ + L GY V++ A A + + +LLLTDI+MPEM+ Sbjct: 1000 ETILIVDDENEILKLSKMILQNQGYHVLTAGTPAQAIQIAQGYKGEINLLLTDIIMPEMN 1059 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L+ + + P++KV+F++G+ A + + ++ KPF ++ L N+V L + Sbjct: 1060 GRDLSEKIYSIFPNIKVLFMSGYTADIIASQGGVDEVMNLILKPFSIKGLTNKVYDTLHV 1119 Query: 121 KN 122 + Sbjct: 1120 SH 1121 >gi|300855391|ref|YP_003780375.1| putative chemotaxis protein CheY [Clostridium ljungdahlii DSM 13528] gi|300435506|gb|ADK15273.1| predicted chemotaxis protein CheY [Clostridium ljungdahlii DSM 13528] Length = 120 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR L L K G+EV+ NG SA K ++ ++ DI MP+MDGI Sbjct: 3 KVLIVDDASFMRISLKTMLSKNGFEVIGEAKNGVSAITKYKQYNPDIVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E ++ E D KV+ IT A+ + + KPF LV +N++L++ Sbjct: 63 EALKKIREYDNKAKVVMITAMGQEAMVKRAIVSGARSFIVKPFKEDQLVKALNKVLSV 120 >gi|322419347|ref|YP_004198570.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320125734|gb|ADW13294.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 460 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ MR L L AGY V + G D + ++ F +++TD+ +P DG+ Sbjct: 2 KKILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + + PD V+ ITG+A V ++ ++KPF L++ V R L Sbjct: 62 EVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFL 117 >gi|237803561|ref|ZP_04591146.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025543|gb|EGI05599.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 957 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L +LG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 838 ETILIVDDEPTVRMLLTDSLGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 897 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E+ P LK +FITG+A A D +VL+KPF + L + V L+ Sbjct: 898 GRQMADAGREVRPQLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALTSRVQELM 955 >gi|110636400|ref|YP_676608.1| histidine kinase [Mesorhizobium sp. BNC1] gi|110287384|gb|ABG65443.1| histidine kinase [Chelativorans sp. BNC1] Length = 416 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +++ +L+ EDD+ + + L GY V+ +GA A + + P LL TD+VMP+M Sbjct: 296 VSEVVLVVEDDEQVLSLTAQMLRDLGYGVIEAGDGAEALAALSDNPEIRLLFTDVVMPDM 355 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G LA A P LKV+F TG+ + + +L KP L L ++ +L Sbjct: 356 NGRRLAEEAQRRRPGLKVLFTTGYTRNGVVHEGVLDPGVNLLQKPASLEQLAAKIRMVL 414 >gi|39995119|ref|NP_951070.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39981881|gb|AAR33343.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298504149|gb|ADI82872.1| response receiver sensor histidine kinase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 516 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 56/113 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+ + +D+ D+ L L AGY + +G A D + E F L+L DI MP MDGIE Sbjct: 5 KVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALERESFDLVLLDIRMPRMDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R + PDL V+ +T + + ++ +SKPF D+ V R Sbjct: 65 VLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVER 117 >gi|291548207|emb|CBL21315.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Ruminococcus sp. SR1/5] Length = 311 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 4/92 (4%) Query: 4 KILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++L+ +D+ D RFL+ ++ + +E+ NG A +++R+ P L+LTDI MP MD Sbjct: 3 RVLVVDDEKLERDGIRFLL-SMEEGEWEIYEAANGKLALNELRKHPVDLMLTDIKMPHMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS 92 G+EL+++A E PDL+++ +G+ A ++ Sbjct: 62 GLELSKKAREEYPDLEIIIFSGYGDFAFAQEA 93 >gi|116750689|ref|YP_847376.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699753|gb|ABK18941.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 483 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD+ + FL + + YEV+SCN+G +A + V EPF L+L D MP +G+E Sbjct: 6 KILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKNGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN------EVNRL 117 + L ++ +T + + ++ L KPF L EVNRL Sbjct: 66 TLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEVNRL 125 Query: 118 L 118 + Sbjct: 126 M 126 >gi|320353794|ref|YP_004195133.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122296|gb|ADW17842.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 778 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + ILLAED+ +R L K GY V+ +G A E E LLL D+VMP+M+ Sbjct: 653 ETILLAEDEPTVRELYATVLKKNGYGVIEATDGEEAVRVFTEHKEAIDLLLFDLVMPKMN 712 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + L P +K +FI+G+A + + ++L KP RDL+ V L Sbjct: 713 GKQAYEAIQHLQPAIKGIFISGYAPENIQQRELLDMHVEILFKPVSPRDLLRAVRHAL 770 >gi|332879435|ref|ZP_08447131.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682625|gb|EGJ55526.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1347 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 15/124 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++I++AEDDD++R +L + L K Y VV C NG A +V P SL+L+D++MPEMDG Sbjct: 1093 KRIVIAEDDDEIRSYLSEELRKH-YYVVPCRNGKEALSEVLRTPPSLVLSDVMMPEMDGY 1151 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS--------KPFHLRDLVNEV 114 L ++ ++ V FI V L S+ + LS KPF+++ L + Sbjct: 1152 TL---CAKIKTNINVNFI---PVVLLTAKSHEKDKIEGLSTGADSYIEKPFNIKVLEYTI 1205 Query: 115 NRLL 118 L+ Sbjct: 1206 RNLI 1209 >gi|114777490|ref|ZP_01452487.1| Multi-sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] gi|114552272|gb|EAU54774.1| Multi-sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] Length = 632 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 4/119 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 + ILL +D + + LGK GY+V++ ++G A ++ +L++ D+VMP++ Sbjct: 514 GEMILLVDDASHVLETGREVLGKLGYQVLTASDGMEAVHVFSTNQDDIALVIMDLVMPKL 573 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG R ++ PD+KV++ TG+ A PD + +A VL+KP+ + L + LL Sbjct: 574 DGAAAMERIRKIRPDVKVIYATGYDMKATVPDDTS--SATVLTKPYSIEKLSVVIRNLL 630 >gi|94970041|ref|YP_592089.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552091|gb|ABF42015.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1132 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ +LL ED++ +R+ + L + GY V+ +G A + VRE + +LL+D+V+ M Sbjct: 1008 SETVLLVEDEEGVRKLVRGILSRQGYHVLEATSGEEALEIVRESTQKIDMLLSDVVLVGM 1067 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL+ R P LKV++++G+ A+ ++A+ L KPF L+ +V +L Sbjct: 1068 SGRELSERLRIQMPSLKVIYMSGYTDDAIVRHGVLTESAEFLQKPFTSDSLLRKVRAVL 1126 >gi|320353926|ref|YP_004195265.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320122428|gb|ADW17974.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 191 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 1/107 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIE 63 IL+A+DD +R+ K LGK GY V +GA A + PF +++TD+VMP ++ GIE Sbjct: 6 ILVADDDPVIRKLFEKRLGKEGYTVTIAADGAEAARLLDTRPFDVIITDLVMPGKIGGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L + A E +++V+ IT +++ D+ L KP + +L Sbjct: 66 LLKLAKEKSVEIEVIVITAHSSIDTAVDAMKKGAVDYLEKPINFDEL 112 >gi|146302774|ref|YP_001197365.1| two component, sigma54 specific, Fis family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146157192|gb|ABQ08046.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Flavobacterium johnsoniae UW101] Length = 387 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L+K L + Y+V +GA+ +K++ + L+L DI MP+MDG Sbjct: 3 KILIIEDEAAIRRVLVKILSEENDSYQVDEAEDGAAGLEKIKNNDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E+ A ++ P++ ++ I+G + + +SKP L L+N V L K Sbjct: 63 VEVLEEAKKIKPEIPMVMISGHGDMETAIQTMRLGAFDYISKPPDLNRLLNTVRNALDKK 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|325567588|ref|ZP_08144255.1| two component response regulator [Enterococcus casseliflavus ATCC 12755] gi|325159021|gb|EGC71167.1| two component response regulator [Enterococcus casseliflavus ATCC 12755] Length = 501 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE--VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LLA+D D R + L + E + NG A+ +++PF L++TD+ MP MDG Sbjct: 3 RLLLADDSYDQREVIKYFLSQHEKEWLIEEAKNGREAWQLFQKQPFDLIITDVKMPFMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R E P++ VMFI+GF + + L KP D ++N+++ Sbjct: 63 HALVARIKEAVPEIPVMFISGFEDFHYVKKAIQLQAVDYLLKPIDPDDFYEQINKII 119 >gi|257875946|ref|ZP_05655599.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257810112|gb|EEV38932.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 501 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE--VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LLA+D D R + L + E + NG A+ +++PF L++TD+ MP MDG Sbjct: 3 RLLLADDSYDQREVIKYFLSQHEKEWRIEEAKNGREAWQLFQKQPFDLIITDVKMPFMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R E P++ VMFI+GF + + L KP D ++N+++ Sbjct: 63 HALVARIKEAVPEIPVMFISGFEDFHYVKKAIQLQAVDYLLKPIDPDDFYEQINKII 119 >gi|257866327|ref|ZP_05645980.1| two-component system response regulator [Enterococcus casseliflavus EC30] gi|257873157|ref|ZP_05652810.1| two-component system response regulator [Enterococcus casseliflavus EC10] gi|257800285|gb|EEV29313.1| two-component system response regulator [Enterococcus casseliflavus EC30] gi|257807321|gb|EEV36143.1| two-component system response regulator [Enterococcus casseliflavus EC10] Length = 501 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE--VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LLA+D D R + L + E + NG A+ +++PF L++TD+ MP MDG Sbjct: 3 RLLLADDSYDQREVIKYFLSQHEKEWLIEEAKNGREAWQLFQKQPFDLIITDVKMPFMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R E P++ VMFI+GF + + L KP D ++N+++ Sbjct: 63 HALVARIKEAVPEIPVMFISGFEDFHYVKKAIQLQAVDYLLKPIDPDDFYEQINKII 119 >gi|217976716|ref|YP_002360863.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylocella silvestris BL2] gi|217502092|gb|ACK49501.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylocella silvestris BL2] Length = 491 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY+V + A+ + V+ L++TD+VMP+ + EL Sbjct: 6 ILIADDDTAIRTVLSQALSRAGYDVRATGTAATLWRWVQSGDGDLVITDVVMPDENAFEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +L P+L ++ ++ ++ L KPF LR+LV+ V R ++ Sbjct: 66 LPKMKKLRPELPIIVMSAQNTFMTAIKASERGAYDYLPKPFDLRELVSIVGRAMS 120 >gi|34557665|ref|NP_907480.1| diguanylate cyclase (fragment) [Wolinella succinogenes DSM 1740] gi|34483382|emb|CAE10380.1| DIGUANYLATE CYCLASE (FRAGMENT) [Wolinella succinogenes] Length = 389 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 ED++++R+ L K L + EVV+ +NG ++ E +++TDI MPEM GIE++RR Sbjct: 2 EDEENIRQVLAKILLRKFKEVVTASNGLEGLERYMENKPDIVITDIRMPEMSGIEMSRRI 61 Query: 69 TELDPDLKVMFITGFAAV-----ALNPDSN----APKNAKVLSKPFHLRDLVNEVNRLLT 119 +DPD ++ T F V A+N N P +A+ L + + +LV VN+ Sbjct: 62 RAIDPDALIVITTAFTDVEHFLDAVNLGINRFILKPIDAEKLEESIY--ELVQTVNKRQD 119 Query: 120 IKN 122 KN Sbjct: 120 FKN 122 >gi|327542377|gb|EGF28861.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopirellula baltica WH47] Length = 486 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 58/112 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+DD RR K + + G+ V +GA A + E F + + DI MP M G+E Sbjct: 7 KILLVDDEDDYRRSCGKFMERMGHTVRLAASGAEAMSFLDREAFDVAVFDIDMPGMSGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L +R E D++V+F+TG + + L+KP L DL + + Sbjct: 67 LMQRVHEESHDVEVVFLTGKGTIEACVQAMQMGACDFLTKPCSLADLEHRIQ 118 >gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + L + L G+ V + ++G A RE+P L++ DI+MP MDG+ Sbjct: 72 ERILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGL 131 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ +R DP+L V+F+T A A + KPF LV V LL Sbjct: 132 EVLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALL 187 >gi|296116621|ref|ZP_06835231.1| PAS/PAC sensor hybrid histidine kinase [Gluconacetobacter hansenii ATCC 23769] gi|295976833|gb|EFG83601.1| PAS/PAC sensor hybrid histidine kinase [Gluconacetobacter hansenii ATCC 23769] Length = 666 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +I++ +D+ +R L G+EV G +A + P L++ D++MPEM G Sbjct: 542 RIMVVDDEPGVRAVTAGFLRARGHEVHDYAGGKAAVAALEAGLGPLDLVIMDVMMPEMGG 601 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E A R + P LKV+++TG+A + PK V+ KPF L ++ R++ Sbjct: 602 QETAHRLQAIQPGLKVLYLTGYANLG-----TLPKGGNVMHKPFTRAGLAEQIGRIM 653 >gi|327539230|gb|EGF25853.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopirellula baltica WH47] Length = 461 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL A+D+ +++ + L + GY V C +G +A D + +EP LL D+ MP M GIE+ Sbjct: 15 ILFADDEPQLQKLMGTELPRMGYRVTVCPDGPTAVDVLSKEPIDCLLVDLDMPGMSGIEV 74 Query: 65 ARRATELDPDLKVMFITG 82 RA E+ P+++ + +TG Sbjct: 75 IARAREIRPEIEAVIMTG 92 >gi|332185104|ref|ZP_08386853.1| sensory box protein [Sphingomonas sp. S17] gi|332014828|gb|EGI56884.1| sensory box protein [Sphingomonas sp. S17] Length = 1032 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD ++R +++ L GY V+ + SA + + P +L TD+VMP + Sbjct: 756 ETVLVVEDDAEVRATVVELLSDLGYRVLKAVDAQSALNVIESGIPIDMLFTDVVMPGTLK 815 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+A E PD+ V+F +G+ ++ K ++LSKP+ L + +L Sbjct: 816 SPELARKARERLPDIAVLFTSGYTENSIVHGGRLDKGVELLSKPYTREALARKFRHVL 873 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 3/112 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILL EDDD +R + L AG+ VV A ++ +L+TDI +P GI Sbjct: 911 RTILLVEDDDLIRANTAETLQDAGFVVVHAVTAEEAMTALQTAQIDVLVTDINLPGESGI 970 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ELA RA +L PDL ++F TG +A A +A +L+KP+ L+ V Sbjct: 971 ELAGRARQLRPDLSIVFATGDGGMA---ADAADMDAALLTKPYSAAQLIGAV 1019 >gi|326201854|ref|ZP_08191724.1| two component transcriptional regulator, AraC family [Clostridium papyrosolvens DSM 2782] gi|325987649|gb|EGD48475.1| two component transcriptional regulator, AraC family [Clostridium papyrosolvens DSM 2782] Length = 544 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLI--KALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++L+ ED++ +R +I + G+ EV+ +NG A D VR+ +++TDI MPEM+ Sbjct: 3 RLLVVEDEEMIRNKIIYNTNWKEHGFVEVLQASNGMEALDIVRKNNIDIVITDIQMPEMN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIEL R L+ +K + IT +A +S + KPF +DL++ V +L Sbjct: 63 GIELIREIKSLNRGIKCIIITAYAEFEYAKESVKLNVNDYILKPFKSKDLLDIVKKL 119 >gi|134278378|ref|ZP_01765092.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 305] gi|134250162|gb|EBA50242.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 305] Length = 611 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|86135912|ref|ZP_01054491.1| sensory box histidine kinase/response regulator hybrid [Roseobacter sp. MED193] gi|85826786|gb|EAQ46982.1| sensory box histidine kinase/response regulator hybrid [Roseobacter sp. MED193] Length = 691 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EM 59 ++KILL EDDDD+R L + L +G+ V ++G SA V + F L++TD+ MP + Sbjct: 572 DEKILLVEDDDDVRSALRQRLSTSGFRVTEASDGTSALKLVSKPTEFDLVVTDLTMPGPV 631 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L RR E ++ ++ +TG+ AL+ ++ + +LSKP L++ + +LL Sbjct: 632 QGMDLVRRIREALGEIPIVILTGYGTDALDELADTSR-CILLSKPVSGPLLISRIRQLL 689 >gi|289626764|ref|ZP_06459718.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 417 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 298 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 357 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 358 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 416 >gi|316934212|ref|YP_004109194.1| Fis family two component sigma54 specific transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315601926|gb|ADU44461.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris DX-1] Length = 480 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKLRPNLPVIVMSAQNTFMTAIRASEKGAYEYLPKPFDLKELIAIVGRAL 119 >gi|257483429|ref|ZP_05637470.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 450 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 331 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 390 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 391 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 449 >gi|224367691|ref|YP_002601854.1| sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) [Desulfobacterium autotrophicum HRM2] gi|223690407|gb|ACN13690.1| sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) [Desulfobacterium autotrophicum HRM2] Length = 451 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 57/106 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD M + L+ L K GY V S ++G A +++R+ F L+++D+ +P MDG+E+ Sbjct: 6 ILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGMDGMEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + D + + IT + V + + KPF + +L Sbjct: 66 LKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEEL 111 >gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 721 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 12/126 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D + R ++ LG+ G++ V NG A +K + E +L+LTDIVMPEM+G Sbjct: 512 RKVLVVDDVEINRAIVVDLLGRLGFDTVEAENGREALEKAQRERPALILTDIVMPEMNGF 571 Query: 63 ELAR--RATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +L R R ++ D+ ++ ++ A+++ +NA LSKP L L+ ++ Sbjct: 572 DLTRNLRRSQAFADVPIVAMSASPSGVNRAMSIEAGANA-----FLSKPVDLEALLTQIA 626 Query: 116 RLLTIK 121 LL +K Sbjct: 627 TLLGLK 632 >gi|269103175|ref|ZP_06155872.1| flagellar regulatory protein FleQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268163073|gb|EEZ41569.1| flagellar regulatory protein FleQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 486 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ +L+ EDDD +R LI L AGY + N+ A ++E+ ++++D+ M M Sbjct: 1 MNQTCVLVVEDDDGLREALIDTLALAGYNWLEANSAEQALLMLKEQSVDIVVSDVQMSGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G+ L R P L V+ +T FA + + +SKPF L+N V R Sbjct: 61 NGLSLLRSIKLTYPKLPVILMTAFANIEDAVIAMREGAVDYMSKPFAPEVLLNLVGRYAP 120 Query: 120 IKN 122 IKN Sbjct: 121 IKN 123 >gi|148262352|ref|YP_001229058.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146395852|gb|ABQ24485.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 885 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 65/117 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ILL EDD+ +R + + L +GY+V+ ++ A V LL+TD++MP+M+G Sbjct: 764 HGSILLVEDDEMVRTMVKELLAGSGYDVIETDDPCHALSLVDGRVIDLLITDVIMPDMNG 823 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ + P LKV+F++G+ + +A + KPF ++ + ++ +L Sbjct: 824 PELHKQLLSVHPGLKVVFMSGYTDNVVVQYLDASDLGNFIQKPFTVQAMSAKIAGIL 880 >gi|146278457|ref|YP_001168616.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145556698|gb|ABP71311.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 670 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +L+ +D D+ R L L +AG EVV C + A +R++P + LL+TD MP + Sbjct: 543 RTVLVVDDHADVLRVLSAFLEQAGAEVVPCADPRDALAALRDDPTLWDLLVTDFDMPHVT 602 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G +L + A EL PDL V+ IT P+ A VL KP D + Sbjct: 603 GADLGQAANELAPDLPVVLITALPDWRSRMTRATPRFASVLGKPLARSDFL 653 >gi|299145092|ref|ZP_07038160.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298515583|gb|EFI39464.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1330 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+DD R FLI L K Y+V NG A + + + ++++D++MPEMDG+EL Sbjct: 1083 LLIVEDNDDFRNFLINCL-KDTYQVFDAPNGKEALEILAHQSIQIVISDVMMPEMDGMEL 1141 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRLL 118 R+ + D++ I A D + K ++KPF+L L+ + ++L Sbjct: 1142 CRK---IKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKIL 1197 >gi|126445955|ref|YP_001077369.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|126238809|gb|ABO01921.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10247] Length = 611 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGKAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|222053126|ref|YP_002535488.1| multi-sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221562415|gb|ACM18387.1| multi-sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 516 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +D+ D+ L L AGY +G + + + FSL+L DI MP +DG Sbjct: 3 NKKILIVDDEPDIALILKLQLEDAGYRTAIARDGVEGLEAIDRDRFSLVLLDIKMPRIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +++ R L P++ V+ +T + + ++ ++KPF D++ +V R + + Sbjct: 63 LQMLERVQNLHPEVAVVMMTAHGSEDIAVEAMKNGALDYIAKPFSTEDVLQKVERAIQL 121 >gi|152983516|ref|YP_001349626.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150958674|gb|ABR80699.1| two-component response regulator [Pseudomonas aeruginosa PA7] Length = 470 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L G+E V+ + +A + E FSL+++D+ MP MD Sbjct: 1 MAAKVLLVEDDRALREALSDTLLLGGHEFVAVESAEAALPVLAREAFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T + AV ++ A L KPF R L++ V R Sbjct: 61 GHQLLGLIRARHPHLPVLLMTAYGAVDRAVEAMRQGAADYLVKPFEARALLDLVAR 116 >gi|76817790|ref|YP_336199.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|126455851|ref|YP_001076665.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106a] gi|167724876|ref|ZP_02408112.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei DM98] gi|167743814|ref|ZP_02416588.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 14] gi|167829356|ref|ZP_02460827.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 9] gi|226195826|ref|ZP_03791413.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pakistan 9] gi|237509089|ref|ZP_04521804.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei MSHR346] gi|242312114|ref|ZP_04811131.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106b] gi|254262426|ref|ZP_04953291.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710a] gi|76582263|gb|ABA51737.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|126229619|gb|ABN93032.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106a] gi|225932311|gb|EEH28311.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pakistan 9] gi|235001294|gb|EEP50718.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei MSHR346] gi|242135353|gb|EES21756.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106b] gi|254213428|gb|EET02813.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710a] Length = 611 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|39935659|ref|NP_947935.1| nitrogen metabolism transcriptional regulator NtrC [Rhodopseudomonas palustris CGA009] gi|192291241|ref|YP_001991846.1| Fis family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39649512|emb|CAE28034.1| nitrogen assimilation regulatory protein ntrC Response regulator [Rhodopseudomonas palustris CGA009] gi|192284990|gb|ACF01371.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Rhodopseudomonas palustris TIE-1] Length = 480 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKLRPNLPVIVMSAQNTFMTAIRASEKGAYEYLPKPFDLKELIAIVGRAL 119 >gi|21231334|ref|NP_637251.1| chemotaxis response regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21242648|ref|NP_642230.1| chemotaxis response regulator [Xanthomonas axonopodis pv. citri str. 306] gi|58582458|ref|YP_201474.1| chemotaxis response regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|66768614|ref|YP_243376.1| chemotaxis response regulator [Xanthomonas campestris pv. campestris str. 8004] gi|78047513|ref|YP_363688.1| chemotaxis response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84624349|ref|YP_451721.1| chemotaxis response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711983|ref|ZP_02243190.1| chemotaxis response regulator [Xanthomonas oryzae pv. oryzicola BLS256] gi|188991568|ref|YP_001903578.1| chemotaxis response regulator [Xanthomonas campestris pv. campestris str. B100] gi|289662359|ref|ZP_06483940.1| chemotaxis response regulator [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667250|ref|ZP_06488325.1| chemotaxis response regulator [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294624027|ref|ZP_06702795.1| chemotaxis response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665074|ref|ZP_06730379.1| chemotaxis response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325918396|ref|ZP_08180526.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325919201|ref|ZP_08181251.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325929026|ref|ZP_08190183.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|21108116|gb|AAM36766.1| chemotaxis response regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21112993|gb|AAM41175.1| chemotaxis response regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58427052|gb|AAW76089.1| chemotaxis response regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|66573946|gb|AAY49356.1| chemotaxis response regulator [Xanthomonas campestris pv. campestris str. 8004] gi|78035943|emb|CAJ23634.1| chemotaxis response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84368289|dbj|BAE69447.1| chemotaxis response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|167733328|emb|CAP51527.1| chemotaxis response regulator [Xanthomonas campestris pv. campestris] gi|292601673|gb|EFF45642.1| chemotaxis response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605155|gb|EFF48501.1| chemotaxis response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325535390|gb|EGD07256.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325540601|gb|EGD12186.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325550318|gb|EGD21122.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 121 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D MR+ + AL AG+ V +GA A + + + F+ ++TD+ MP MD Sbjct: 1 MSARILVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L R +L PD K ++ +T +A + A L KPF+ L+ V ++ Sbjct: 61 GISLIRELRQL-PDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|328951450|ref|YP_004368785.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451774|gb|AEB12675.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ EDD + R L+ L AGY + + G+ A K+ EE F L++ D+ +P++DG Sbjct: 3 GERLLIVEDDPRLARLLVNELAAAGYAPSAVHTGSDALAKLEEEAFELVILDLNLPDLDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +E+A R D ++ +T V + ++KPF L++L+ V+ Sbjct: 63 LEVAHRVAG-QKDTSILMLTARGDVESRVQGLYAGASDYVTKPFSLKELLARVH 115 >gi|255603920|ref|XP_002538134.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223513636|gb|EEF24248.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 122 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ + AL AGYEV+ N+G A K+ + L+++D+ MP MD Sbjct: 1 MAKTILVVDDSASLRQVVSIALKGAGYEVIEANDGKDALSKLNGQKIHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI + A +L P K V+ +T A + + A + KPF ++ V++L Sbjct: 61 GISFVKAAKQL-PAYKFTPVIMLTTEAGESKKAEGQAAGAKAWVVKPFQPAQMLTAVSKL 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus LMG 18311] gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 68/115 (59%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + D +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRLQQ-EKDTYIMMMTARDSI-MDIVAGLDRGADDYIIKPFAIEELLARI 113 >gi|148547223|ref|YP_001267325.1| response regulator receiver protein [Pseudomonas putida F1] gi|148511281|gb|ABQ78141.1| response regulator receiver protein [Pseudomonas putida F1] Length = 116 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 14/115 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 +L+ EDDD +R ++ L + GY+V+ + +A +V E+P +L++TD+ +P+M Sbjct: 2 HLLVVEDDDIVRMLTVEVLDELGYKVIEAEDATAAL-RVLEDPSQALALMMTDVGLPDMR 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF---HLRDLV 111 G LA +A EL P L V+F +G+A DS P+ ++ KPF LRD V Sbjct: 61 GEVLAGKARELRPLLPVLFASGYA------DSLTVPEGMHLIGKPFSIDQLRDTV 109 >gi|289648559|ref|ZP_06479902.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae pv. aesculi str. 2250] Length = 512 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDI-VMPEMD 60 +ILL +D+ ++R + L + G+EV+ ++ + A +++RE E F L+++DI + MD Sbjct: 396 RILLVDDEFEVRETMATWLKQLGHEVIVASDASGALERMREAAESFDLMISDIGLTGPMD 455 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA + L D+ V+ +TG+A L + P + VL KPF + LV + + +T Sbjct: 456 GCELAYQCRVLYDDMPVLLVTGYAGDDL--EKRLPPDTLVLDKPFDMPKLVAAIAKCVT 512 >gi|254184706|ref|ZP_04891295.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1655] gi|184215298|gb|EDU12279.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1655] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|254193817|ref|ZP_04900249.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei S13] gi|169650568|gb|EDS83261.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei S13] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|197124754|ref|YP_002136705.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|220919475|ref|YP_002494779.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|196174603|gb|ACG75576.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] gi|219957329|gb|ACL67713.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 469 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D D +R ++ L + G++V++ GA A R+ +++TD+ M +DGIE Sbjct: 3 RILVADDHDALREGMVITLARLGHDVLAVRGGAEAIAAYRKRAADVVVTDLRMVPVDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR DPD V+ I+ +A D+ L KPF L V + + I Sbjct: 63 VVRRLRAEDPDATVVVISAHGTIATAVDAMREGAIDFLEKPFSTEALRARVEKAIEI 119 >gi|310641557|ref|YP_003946315.1| response regulator containing chey-like receiver, aaa-type atpase, and DNA-binding domains [Paenibacillus polymyxa SC2] gi|309246507|gb|ADO56074.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Paenibacillus polymyxa SC2] Length = 121 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G+EVV +G+ A +K +E L+ DI MPEM Sbjct: 1 MANRILIVDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++DP+ KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 61 DGIAALKEIKQIDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQSDRVIEAINKTLG 120 Query: 120 I 120 + Sbjct: 121 V 121 >gi|217422056|ref|ZP_03453559.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 576] gi|217394287|gb|EEC34306.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 576] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|167899437|ref|ZP_02486838.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei 7894] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|167850833|ref|ZP_02476341.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei B7210] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|126442455|ref|YP_001063770.1| Signal transduction histidine kinase [Burkholderia pseudomallei 668] gi|126221946|gb|ABN85451.1| signal transduction histidine kinase [Burkholderia pseudomallei 668] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|94970627|ref|YP_592675.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552677|gb|ABF42601.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 766 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDGI 62 +LL EDD+ +R + L + GY V NG A +++ +LLLTD+VMP G Sbjct: 644 VLLVEDDEQVRNLTLTMLRRFGYTVYVAENGTEALKFNETHSGEINLLLTDVVMPGASGP 703 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+A + + P +KV++++G+ A+ + +L KPF L V +L Sbjct: 704 EIAVKISASRPGIKVLYMSGYTDDAIGTHGILEEGISLLQKPFTPAALGERVREVL 759 >gi|53716772|ref|YP_104975.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121597705|ref|YP_990904.1| sensory box histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|238563262|ref|ZP_00439152.2| sensory box histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] gi|254175957|ref|ZP_04882615.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|254202897|ref|ZP_04909259.1| sensory box histidine kinase/response regulator [Burkholderia mallei FMH] gi|254208234|ref|ZP_04914583.1| sensory box histidine kinase/response regulator [Burkholderia mallei JHU] gi|52422742|gb|AAU46312.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121225503|gb|ABM49034.1| sensory box histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|147745942|gb|EDK53020.1| sensory box histidine kinase/response regulator [Burkholderia mallei FMH] gi|147750921|gb|EDK57989.1| sensory box histidine kinase/response regulator [Burkholderia mallei JHU] gi|160696999|gb|EDP86969.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|238521041|gb|EEP84496.1| sensory box histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|197122377|ref|YP_002134328.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917159|ref|YP_002492463.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172226|gb|ACG73199.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] gi|219955013|gb|ACL65397.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 473 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 58/106 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++RR L L + GYEV + +G A + P +++TD+VMP + G+EL Sbjct: 4 VLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHRTPVHVVVTDLVMPRVGGMEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 RR ++ PD+ V+ IT +V + ++KPF +L Sbjct: 64 LRRVSQDFPDVPVILITAHGSVDSAVAALKAGAFDYITKPFEQEEL 109 >gi|189426125|ref|YP_001953302.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189422384|gb|ACD96782.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 454 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD +RR L L +AGYEV + +G + + L+++D+ MP MD Sbjct: 1 MHPTILIIDDDASLRRVLEYQLQEAGYEVATAASGEEGLARFSDLAPQLVISDMQMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ + E P+ V+ IT F +V + + ++KPF+ +L V R L + Sbjct: 61 GMQVLKTVKERSPETPVIIITAFGSVDVAVQAMKQGAYDYITKPFNRDELHLTVARALHL 120 Query: 121 KN 122 + Sbjct: 121 TS 122 >gi|86747838|ref|YP_484334.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86570866|gb|ABD05423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 827 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ ED+ +R +++ L GY V+ +G S ++ +EP LLL+DI +P ++G Sbjct: 709 ETVLVVEDEAVVRAVIVEMLRDQGYRVLEAVDGPSGLAMLQGDEPIDLLLSDIGLPGLNG 768 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A PD+ V+ +TG+A A D ++++KPF DL+ V ++ Sbjct: 769 RQLADYARLHRPDIGVLLMTGYAESAAMTDGIREAGIELITKPFDHGDLMTRVRAMV 825 >gi|115524764|ref|YP_781675.1| nitrogen metabolism transcriptional regulator NtrC [Rhodopseudomonas palustris BisA53] gi|115518711|gb|ABJ06695.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Rhodopseudomonas palustris BisA53] Length = 480 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKLRPNLPVIVMSAQNTFMTAIRASEKGAYEYLPKPFDLKELIAIVGRAL 119 >gi|167907768|ref|ZP_02494973.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei NCTC 13177] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|53722961|ref|YP_111946.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] gi|52213375|emb|CAH39418.1| putative sensor kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|289625110|ref|ZP_06458064.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 512 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDI-VMPEMD 60 +ILL +D+ ++R + L + G+EV+ ++ + A +++RE E F L+++DI + MD Sbjct: 396 RILLVDDEFEVRETMATWLKQLGHEVIVASDASGALERMREAAESFDLMISDIGLTGPMD 455 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA + L D+ V+ +TG+A L + P + VL KPF + LV + + +T Sbjct: 456 GCELAYQCRVLYDDMPVLLVTGYAGDDL--EKRLPPDTLVLDKPFDMPKLVAAIAKCVT 512 >gi|184201966|ref|YP_001856173.1| putative two-component response regulator [Kocuria rhizophila DC2201] gi|183582196|dbj|BAG30667.1| putative two-component response regulator [Kocuria rhizophila DC2201] Length = 127 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+A+DD D+R ++ L +AGYEV + +G +A + + L++ D++MP + G Sbjct: 5 HPSVLVADDDPDIRDLVVFKLQQAGYEVRAVEDGTAALGALEDAIPDLVVLDVMMPGLSG 64 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +++ R RATE +KV+ +T A D + + ++KPF R+L++ VN LL Sbjct: 65 LDVLRQIRATERLSSVKVLLLTARARDTDVDDGYSTGADEYVTKPFSPRELLHRVNSLL 123 >gi|167923953|ref|ZP_02511044.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei BCC215] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|254185927|ref|ZP_04892445.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pasteur 52237] gi|157933613|gb|EDO89283.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pasteur 52237] Length = 611 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|91203631|emb|CAJ71284.1| similar to sigma-54 dependent transcriptional response regulator [Candidatus Kuenenia stuttgartiensis] Length = 453 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 64/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +D+++ +A+ K GY+ + +G + + E +++TD++M + G Sbjct: 5 NTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMHDFSG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E+ + E P+ +++ ITG+ V D+ A L KP ++ L E+N+L+ + Sbjct: 65 MEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKLVEKQ 124 Query: 122 N 122 N Sbjct: 125 N 125 >gi|322421865|ref|YP_004201088.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320128252|gb|ADW15812.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 468 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+DD R F+ L GY+V +G A K+ +++TDI+MP ++G+E Sbjct: 5 KILIADDDKKTRDFVAAFLSYKGYQVHQAFDGQDALQKIEMHDVQMVITDIMMPRVNGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ L P++ + + FA + + L KPF+L +L V R L Sbjct: 65 FIRQLKSLRPEIVTIAYSAFANNEMTANLLKAGAFFYLEKPFNLEELETHVKRGL 119 >gi|262193605|ref|YP_003264814.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262076952|gb|ACY12921.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 295 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI++AEDDD + + +LG AG+ + ++G A + VR LL+ D++MP MDGI Sbjct: 4 KKIVVAEDDDAIAHMVNMSLGDAGFLCLRASDGEEALNLVRLHTPDLLVLDVMMPRMDGI 63 Query: 63 ELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ARR + + ++ +T +AV + LSKPF LR+ + L+ Sbjct: 64 EVARRIKGDVVLSKIPILMLTALSAVDNKLEGYEAGADAYLSKPFDLREFSAQAKALI 121 >gi|224370946|ref|YP_002605110.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223693663|gb|ACN16946.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 884 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEM 59 + ILL ED+ + L + GY+V+ ++ A + F LL+TD+VMP+M Sbjct: 763 TETILLVEDERAILEMTSAMLERLGYKVLGASSPHEAIRMSQNADFKIHLLMTDVVMPQM 822 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA + ++ P+LK +F++G+ A + + ++KPF +DL +++ +L Sbjct: 823 NGWELAEKVLQVYPNLKCLFMSGYTANVIAHHGVLEEGVHFINKPFSKQDLADKLRDVL 881 >gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 684 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L GYEV +G A + V +P L+L DI MPEMDG E+ Sbjct: 13 ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPPDLILLDIKMPEMDGYEV 72 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +R A E ++ V+F++ V + ++KPF L +++ V LT+++ Sbjct: 73 CQRLKADEKTAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLEEVIARVKTQLTLRH 132 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ + L + GY+ +NG D + + + ++L D+ MPEMDG+ Sbjct: 562 RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAISRQSYDVILMDVQMPEMDGLT 621 Query: 64 LAR 66 R Sbjct: 622 ATR 624 >gi|86160656|ref|YP_467441.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85777167|gb|ABC84004.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 469 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D D +R ++ L + G++V++ GA A R+ +++TD+ M +DGIE Sbjct: 3 RILVADDHDALREGMVITLARLGHDVLAVRGGAEAIAAYRKRAADVVVTDLRMVPVDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR DPD V+ I+ +A D+ L KPF L V + + I Sbjct: 63 VVRRIRAEDPDATVVVISAHGTIATAVDAMREGAIDFLEKPFSTEALRARVEKAVEI 119 >gi|46578535|ref|YP_009343.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120603883|ref|YP_968283.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46447946|gb|AAS94602.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120564112|gb|ABM29856.1| sigma54 specific transcriptional regulator, Fis family [Desulfovibrio vulgaris DP4] gi|311232461|gb|ADP85315.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris RCH1] Length = 454 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 56/116 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ILL ED+ MR + AL +AGYEV + + +A + PF L++TD+ +P M G+ Sbjct: 4 HSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMSGM 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL E+ P V+ IT F V L + L KPF L+ V R Sbjct: 64 ELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFF 119 >gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564] gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564] Length = 232 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY V+ ++GA A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L PD +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|163786406|ref|ZP_02180854.1| putative two component system response regulator [Flavobacteriales bacterium ALC-1] gi|159878266|gb|EDP72322.1| putative two component system response regulator [Flavobacteriales bacterium ALC-1] Length = 227 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 66/116 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K++LAED+ + + + ++L +EV+ C+NG A++ + E +L+ D++MP+ DG Sbjct: 6 KLVLAEDEAALGQIIKESLETRDFEVILCDNGEKAFEAYKSESPEILVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA+ +D + ++F+T + A + + L KPF + +L+ ++ L++ Sbjct: 66 LAKEIRAIDDAIPIIFLTAKSQTADVVEGFSIGGNDYLKKPFSMEELIVRIHNLIS 121 >gi|309792010|ref|ZP_07686488.1| metal dependent phosphohydrolase [Oscillochloris trichoides DG6] gi|308226004|gb|EFO79754.1| metal dependent phosphohydrolase [Oscillochloris trichoides DG6] Length = 511 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD +R F + L + Y+V + NGA A + ++ + F L+LTD+ MP MDG++ Sbjct: 15 RILVVEDDTTIRTFCQRLL-QMTYDVTTAENGAVAVNLLQSQSFDLVLTDMQMPLMDGMQ 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + + P++ V+ +T FA V + LSKP L V L ++ Sbjct: 74 LLQHIRQNHPEIDVVMLTAFATVETARQALKMGALDYLSKPIEAEQLERTVRTSLELR 131 >gi|296162067|ref|ZP_06844865.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295887688|gb|EFG67508.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1648 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD+++R +++ L GY V+ + SA V P +L TD+VMP + Sbjct: 1377 ETVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLR 1436 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELAR+A E P + V+F +G+ A+ + ++LSKP+ L ++ +L Sbjct: 1437 STELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALARKIRYVLQT 1496 Query: 121 KN 122 +N Sbjct: 1497 QN 1498 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R ++ + L AG++V +G +A + R+E L+L+D++MP +DG Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHDVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L RA DP+L+ V+ ++ A D L+KPF R+L+ V+ Sbjct: 721 LL-RALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVS 774 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 57/109 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ +R + L ++++ A + E S++LTD+ + G++ Sbjct: 1533 RILLVEDDELIRASTAELLRMFDFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1592 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 LA + PDL+V+F+TG+ V +A +L KP+ L DL++ Sbjct: 1593 LALEVCAVRPDLRVIFLTGYDLVLTPAQRKVLPHAILLRKPYDLLDLID 1641 >gi|91779864|ref|YP_555072.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91692524|gb|ABE35722.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1651 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD+++R +++ L GY V+ + SA V P +L TD+VMP + Sbjct: 1377 ETVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLR 1436 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELAR+A E P + V+F +G+ A+ + ++LSKP+ L ++ +L Sbjct: 1437 STELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALARKIRYVLQT 1496 Query: 121 KN 122 +N Sbjct: 1497 QN 1498 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R ++ + L AG+EV +G +A + R+E L+L+D++MP +DG Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHEVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L RA DP+L+ V+ ++ A D L+KPF R+L+ V+ Sbjct: 721 LL-RALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVS 774 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 56/109 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ +R + L ++++ A + E S++LTD+ + G++ Sbjct: 1536 RILLVEDDELVRASTAELLRMFEFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1595 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 LA PDL+V+F+TG+ V +A +L KP+ L DL++ Sbjct: 1596 LALEVCAGRPDLRVIFLTGYDLVLTPEQRKVLPHAILLRKPYDLLDLID 1644 >gi|196233656|ref|ZP_03132497.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196222326|gb|EDY16855.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 683 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS---LLLTDIVMPEMDG 61 IL +D+ +R + L +AGY V+ +G A ++ + + LL+TD+VMP M G Sbjct: 564 ILFVDDEAMLREVGLTVLLEAGYRVIVAEDGHDALARLADMGTARPDLLVTDVVMPGMSG 623 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++LA + L P + + +G+ AL P L KP+ L L+ +V +L+ + Sbjct: 624 VQLATEVSRLSPGTRALLCSGYTRDALAQSGGLPAGVAFLPKPYSLAALLEKVGEMLSAR 683 >gi|197121933|ref|YP_002133884.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|220916726|ref|YP_002492030.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196171782|gb|ACG72755.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|219954580|gb|ACL64964.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 127 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 48/81 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDDDD R + + L +G V+S +G + E +++TD+ MP M G+E Sbjct: 7 RVLLVEDDDDNRELMAEVLTASGCLVLSAASGQEGLKTLSEHSIDVVVTDVGMPGMGGLE 66 Query: 64 LARRATELDPDLKVMFITGFA 84 +AR A + P + V+ +TG+A Sbjct: 67 MARAAKAIAPTVPVVIVTGWA 87 >gi|330870392|gb|EGH05101.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 430 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDI-VMPEMD 60 +ILL +D+ ++R + L + G+EV+ ++ + A +++RE E F L+++DI + MD Sbjct: 314 RILLVDDEFEVRETMATWLKQLGHEVIVASDASGALERMREAAESFDLMISDIGLTGPMD 373 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA + L D+ V+ +TG+A L + P + VL KPF + LV + + +T Sbjct: 374 GCELAYQCRVLYDDMPVLLVTGYAGDDL--EKRLPPDTLVLDKPFDMPKLVAAIAKCVT 430 >gi|332716768|ref|YP_004444234.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] gi|325063453|gb|ADY67143.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] Length = 991 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD+ +R + L G+ VV N A + E +L+TDI +P+M G EL Sbjct: 874 VLLVEDDELIRMNSTEMLADNGFAVVEAGNAVQALKAIETEEIDVLVTDIGLPDMKGGEL 933 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A A P L ++F TG + + AP+ A +L+KP+ + +V+ V Sbjct: 934 AVEALRRKPGLAIVFATGDNQLP----NGAPETAVLLTKPYDEQQIVSAV 979 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD+++R +++ L GY V++ + + V P ++ TD+VMP + Sbjct: 719 ETILVVEDDEEVRSTVVETLSDLGYRVLTARDAQAGLTVVESGIPIDVIFTDVVMPGPLK 778 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ARRA E P+L V+F +G+ ++ ++LSKP+ L + ++ Sbjct: 779 SREMARRAQERLPNLAVLFTSGYTENSIVHGGKLDSGVELLSKPYTREALARRIRHVI 836 >gi|310823065|ref|YP_003955423.1| response regulator/ggdef/gaf domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309396137|gb|ADO73596.1| Response regulator/GGDEF/GAF domain protein [Stigmatella aurantiaca DW4/3-1] Length = 616 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD R F+ L + Y VV+ +G A ++V F L++TD+VMP +D Sbjct: 1 MAAPILVVDDDLFFREFVTDLLSRRDYRVVAVEDGMRALEEVALTRFDLIITDVVMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R ELDP+ +V+ ++ V + + A L+KP DL V+R L Sbjct: 61 GFALTARLRELDPEQEVLLVSHRPDVKGSEMALRAGAADCLTKPIEEADLFLAVDRAL 118 >gi|302187742|ref|ZP_07264415.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 676 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + LG+ GY + + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRALVSEVLGELGYTFIEAGEASDAVPILESGQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 674 >gi|221236268|ref|YP_002518705.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|220965441|gb|ACL96797.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 797 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-M 59 ++ +L+ +D+ +R ++ L + GY + +GA+ ++ LL+TD+ +P + Sbjct: 676 DKTVLVVDDEPTVRMLVVDTLSELGYACLEAPDGAAGLRILQSGRQVDLLITDVGLPGGL 735 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A L P LKV+FITG+A A+ + +VL+KPF + DL V+R+L Sbjct: 736 NGRQVADGARALLPRLKVLFITGYAENAVLNHGHIEYGMEVLTKPFAVSDLTGRVDRML 794 >gi|167916109|ref|ZP_02503200.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei 112] Length = 611 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 464 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 523 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 524 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 581 >gi|148547450|ref|YP_001267552.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148511508|gb|ABQ78368.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 553 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPE-MDG 61 K++L ED+ +R +++ L G+EV + +G AY ++E P LL+TD+ +P +DG Sbjct: 430 KVMLVEDEPALRLVILEVLLDQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDG 489 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA P V+ ITG+ ++ + ++L+KPF L+ L + RLL Sbjct: 490 YQLADACRASAPHAAVLLITGYDLAHSTANARPNRRTELLAKPFDLQALAQALERLL 546 >gi|218781131|ref|YP_002432449.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762515|gb|ACL04981.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 796 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++L+ +D++ + + L + L + GY+V + A + +EP + L++TD+ MP+M Sbjct: 672 ERLLIVDDEEAIIKMLAQMLHRLGYKVTCFLDSLKACNAFFQEPESYDLVITDLTMPKMT 731 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LA + ++ P L ++ TG++ +A + D +LSKP ++ DL ++ +L Sbjct: 732 GLALAEKMLKIKPSLPIILFTGYSEMASSSDVEKMGVKALLSKPANIMDLGRKIREVL 789 >gi|128599|sp|P10576|NTRC_BRASR RecName: Full=Nitrogen assimilation regulatory protein gi|77977|pir||B26499 nitrogen assimilation regulatory protein ntrC - Bradyrhizobium sp gi|152131|gb|AAA26239.1| open reading frame B [Bradyrhizobium sp.] Length = 480 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAA--VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ A+ P + L KPF L++L+ V R L Sbjct: 66 LPRIKKMRPNLPVIVMSAQNTFMTAIRPSERG--AYEYLPKPFDLKELITIVGRAL 119 >gi|17232455|ref|NP_489003.1| adenylate cyclase [Nostoc sp. PCC 7120] gi|17134101|dbj|BAB76662.1| adenylate cyclase carring two-component hybrid sensor and regulator domains [Nostoc sp. PCC 7120] Length = 1155 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+ D+R ++ L ++GY+V + NG + KV+E +L++TD++MP + G+ Sbjct: 797 HSILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKVQELTPNLIVTDLMMPLVTGL 856 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R R E ++ +T +S L+KPF+ R+L+ EV LL + Sbjct: 857 EMIRMVRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 916 Query: 121 K 121 K Sbjct: 917 K 917 Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +D+ D L + + Y+V+ +G +A D + +E +++++D MP M G Sbjct: 10 KILVVDDEPDNLDLLYRTFYR-DYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E PD+ + +TG+ V L NA K K ++KP+ +L V + L Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQALDTH 128 Query: 122 N 122 N Sbjct: 129 N 129 >gi|308272283|emb|CBX28889.1| Acetoacetate metabolism regulatory protein atoC [uncultured Desulfobacterium sp.] Length = 457 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 51/84 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R L L K GYE V +GA A ++ + F L+LTD+ M +DG++ Sbjct: 11 RILIVDDEKIARENLDHILKKEGYETVPAESGAVAIKELEKTEFDLVLTDLKMQVVDGLK 70 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 + + EL PD +V+ ITG+A VA Sbjct: 71 VLEKTKELYPDTEVIIITGYATVA 94 >gi|241518477|ref|YP_002979105.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862890|gb|ACS60554.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 708 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 Q +L+ EDDD +R + + L YE V +N +A + LL++D+ +P M+ Sbjct: 582 GQTVLVVEDDDSVRLLICEVLADLSYEAVEASNADAAIPIIASPRAIDLLISDVGLPGMN 641 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA A + P+L V+F+TG+A A N ++ KPF + L +++ +++ Sbjct: 642 GRQLAEVARQHRPELPVIFVTGYAQNATAKAEFLGSNMAMIGKPFAVEVLAEKISDMIS 700 >gi|167034927|ref|YP_001670158.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida GB-1] gi|166861415|gb|ABY99822.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida GB-1] Length = 451 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R+ L L G+ + + A + VR + FSL+++D+ MP MD Sbjct: 1 MAVKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVRGDAFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L + P L V+ +T AAV ++ A L KPF + L++ V R Sbjct: 61 GHQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLSLVQR 116 >gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.] Length = 1155 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+ D+R ++ L ++GY+V + NG + KV+E +L++TD++MP + G+ Sbjct: 797 HSILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKVQELTPNLIVTDLMMPLVTGL 856 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R R E ++ +T +S L+KPF+ R+L+ EV LL + Sbjct: 857 EMIRMVRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 916 Query: 121 K 121 K Sbjct: 917 K 917 Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +D+ D L + + Y+V+ +G +A D + +E +++++D MP M G Sbjct: 10 KILVVDDEPDNLDLLYRTFYR-DYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E PD+ + +TG+ V L NA K K ++KP+ +L V + L Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQALDTH 128 Query: 122 N 122 N Sbjct: 129 N 129 >gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 232 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ ED+ + R L L GY+V +NG A + R + L+L D+++P M Sbjct: 1 MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIEL RR D V+ +T ++V ++KPF + +L+ + L + Sbjct: 61 GIELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRL 120 Query: 121 KN 122 + Sbjct: 121 QG 122 >gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] Length = 234 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD ++ + L GY++ CN+G ++ PF L++ DI++PEMDGI Sbjct: 4 KKVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIMLPEMDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ LD ++ IT + + +S A ++KPF +R+ + V ++ Sbjct: 64 AICQKLRALDNFTPILMITAKSEEIDKVIGLESGAD---DYITKPFKIREFIARVKAIM 119 >gi|146338949|ref|YP_001203997.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146191755|emb|CAL75760.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 532 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59 ++ +L+ ED+ ++R ++ + L + GY V +G +A + E LLLTDIVMP M Sbjct: 411 SETVLIVEDEPEVRSYIAETLSELGYAVREAPDGPAALALLSRESLDVDLLLTDIVMPGM 470 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA P LKV+F+TG++ A+ +L KP L +++ +L Sbjct: 471 NGRQLADDLRNSRPKLKVLFMTGYSRNAIVHQGRLDPGVALLQKPLSRTMLSSKIREVL 529 >gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1232 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED++ R I+ L + G+EV + NG A + + E F L+L D+ MPEM G+E Sbjct: 1099 RILLAEDNEINRILAIELLHELGHEVTAVENGRLALEALGRERFDLVLMDVQMPEMGGLE 1158 Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 RR E +DP L V+ +T +A A LSKP R+L Sbjct: 1159 AVRRIREEPPAGVDPRLPVVALTAYALEGDRERFLAAGMDGYLSKPIRAREL 1210 >gi|325914826|ref|ZP_08177161.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas vesicatoria ATCC 35937] gi|325538917|gb|EGD10578.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas vesicatoria ATCC 35937] Length = 122 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED +++R + +AL AG V + ++ A +R+ P+ ++ +D+ MP M G Sbjct: 6 RLLMVEDQEELRELIGEALRDAGINVDTADDAQDALHMLRDSGPYDVVFSDVRMPNGMSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ + +L P +V+ +GFA L P P L KP+ LR L++ Sbjct: 66 IELSEQVAQLLPQARVILASGFAKAQLPP---LPAGVDFLPKPYRLRQLID 113 >gi|254436808|ref|ZP_05050302.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198252254|gb|EDY76568.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 716 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 +LL ED+ +R F +AL G+ V+ + +A + + L LTD++MP DG Sbjct: 600 VLLVEDEAPVRAFASRALRLRGFTVLEADCAEAALTMLADPDLVVDLFLTDVIMPGKDGP 659 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A + PD KV+F++G+A A + N+ L KPF L +L V+ L Sbjct: 660 TWVREALAVRPDTKVVFVSGYAEEAFGEAQKSIPNSVFLPKPFSLNELTKTVHNQL 715 >gi|229591855|ref|YP_002873974.1| two-component response regulator [Pseudomonas fluorescens SBW25] gi|229363721|emb|CAY51116.1| two-component response regulator [Pseudomonas fluorescens SBW25] Length = 458 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 58/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L AG++ + + A + V +E FSL+++D+ MP MD Sbjct: 1 MAIKVLLVEDDRALREALADTLLLAGHDYRAVGSAEDALEAVEQESFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIELVAR 116 >gi|325915148|ref|ZP_08177474.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] gi|325538670|gb|EGD10340.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] Length = 519 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY ++S +G A + + + P L TD++MP M Sbjct: 394 NETILVVEDKQDVAVVAKMFLENAGYRILSAASGREAIELLEQHPDVDALFTDLIMPGGM 453 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A L P +KV+ TG+A ++ V++KP+ ++L+ + LL Sbjct: 454 NGVMLAREARRLLPKIKVLLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 512 >gi|171060785|ref|YP_001793134.1| two component sigma-54 specific Fis family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778230|gb|ACB36369.1| two component, sigma54 specific, transcriptional regulator, Fis family [Leptothrix cholodnii SP-6] Length = 465 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 65/118 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R+ L A+GKAGY V + A A K+ + PF ++L+D+ MP DGIEL Sbjct: 6 VLVVDDEPAVRQVLSAAIGKAGYPVEMAGSAAEALAKLDKTPFDVVLSDVFMPITDGIEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R+A + + +T F++V D+ ++KP ++V+ + ++ ++ Sbjct: 66 LRQARTRGHNATFIMVTAFSSVDSAIDAIKAGAWDYITKPVRNEEIVHRLEQIDALRG 123 >gi|319787023|ref|YP_004146498.1| response regulator receiver protein [Pseudoxanthomonas suwonensis 11-1] gi|317465535|gb|ADV27267.1| response regulator receiver protein [Pseudoxanthomonas suwonensis 11-1] Length = 120 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDG 61 ++L EDD +R AL AGY VV ++G A + EE F +++DI MP M G Sbjct: 3 RVLYVEDDALLRMVTTIALEDAGYAVVEAHDGHQARRLLDEEGGFDFVISDISMPGGMSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E+A+ A + P + + ++G+A L P P++ L KPF ++ L++ Sbjct: 63 VEVAQAAQAVRPGCRTILVSGYATAQLPP---LPESVVYLGKPFRVQQLID 110 >gi|86158766|ref|YP_465551.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775277|gb|ABC82114.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 135 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 48/81 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDDDD R + + L +G V+S +G + E +++TD+ MP M G+E Sbjct: 15 RVLLVEDDDDNRELMAEVLTASGCLVLSAASGQEGLKTLSEHSIDVVVTDVGMPGMGGLE 74 Query: 64 LARRATELDPDLKVMFITGFA 84 +AR A + P + V+ +TG+A Sbjct: 75 MARAAKAIAPTVPVVIVTGWA 95 >gi|330961218|gb|EGH61478.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 468 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 57/116 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD Sbjct: 1 MSIKVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAADAQPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|330953360|gb|EGH53620.1| PAS protein [Pseudomonas syringae Cit 7] Length = 674 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + LG+ GY + A A + LL++D+ +P M+G Sbjct: 556 ETVLIVEDDPAVRALVSEVLGELGYTFIEAGEAADAVPILESGRRIDLLISDVGLPGMNG 615 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 616 RQLADIARQLRPELKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 672 >gi|224370091|ref|YP_002604255.1| two-component sensory box histidine kinase/response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692808|gb|ACN16091.1| two-component sensory box histidine kinase/response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 445 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 62/117 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +R L +G+ + V +GA A + V P+ +++TD+ MP +DG Sbjct: 3 RILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDGTG 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L ++ LD V+FIT FA V ++ A L+KPF ++ V R L + Sbjct: 63 LLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKL 119 >gi|212703776|ref|ZP_03311904.1| hypothetical protein DESPIG_01824 [Desulfovibrio piger ATCC 29098] gi|212672744|gb|EEB33227.1| hypothetical protein DESPIG_01824 [Desulfovibrio piger ATCC 29098] Length = 133 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 61/114 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +ILL +D+ ++ L K L + GY+ + +G A D +RE+PF +++ D+ MP MDG Sbjct: 3 DTRILLVDDEKEVTALLAKRLVRRGYQCATAADGQQAVDAMREQPFPIVVMDVKMPNMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 I + E P +V+ ++G A + L + + L KP +L+ ++ Sbjct: 63 IAALKIIVEQWPTAQVILLSGHADMQLAVQAMSEGAFGYLMKPVDFDELLFKIE 116 >gi|330882095|gb|EGH16244.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 472 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 353 ETILIVDDEPTVRMLLTDALGDLGYTLIEAVDSLAGLKLLRSDVHIDLLITDVGLPGGMN 412 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A E+ P LK +FITG+A A D +VL+KPF + L V L++ Sbjct: 413 GRQMADAGREVRPHLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDALAARVQELMS 471 >gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13] Length = 231 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDG 62 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E+ + R E D+ VM IT + L D ++KPF +R+L+ Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADD-------YITKPFSIRELMA 115 Query: 113 EVNRLL 118 V LL Sbjct: 116 RVKALL 121 >gi|304407312|ref|ZP_07388965.1| response regulator receiver protein [Paenibacillus curdlanolyticus YK9] gi|304343753|gb|EFM09594.1| response regulator receiver protein [Paenibacillus curdlanolyticus YK9] Length = 164 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D + +R L++ GY +NG A + VR+E L+L D+ +P MDG+E Sbjct: 37 KVLIVDDQNGIRVLLMEVFSSEGYSTFQASNGKLALEIVRQEKPDLVLLDMKIPGMDGLE 96 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R +D D+KV+ +T + + + ++ +KPF + ++ VN L Sbjct: 97 ILRHIKTIDVDIKVIMMTAYGELDIIKEATDLGALMHFTKPFDIDEMRLAVNSQL 151 >gi|301057495|ref|ZP_07198591.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] gi|300448423|gb|EFK12092.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] Length = 457 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ +D++ MR FL L + Y VVS ++G A + ++ F L++TDI M +DG Sbjct: 6 TSKILVVDDEESMREFLEIMLARENYHVVSASDGEEAIRILEKDRFDLVITDIRMKSVDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + R+ + P V+ I+ FA ++ + KPF + D NR++ Sbjct: 66 LGVLRKVKAVSPQTVVVLISAFATAQTAVEAMKEGAYDYIPKPFKVHDF----NRII 118 >gi|222056903|ref|YP_002539265.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221566192|gb|ACM22164.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 466 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+DD R F+ L GY+V +G A +K+ +++TDI+MP ++G+E Sbjct: 5 RILIADDDKKTRDFVAAFLSYKGYQVFQAGDGQDALEKIELNDVQMVITDIMMPRINGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + P++ + + FA + + L KPF+L +L V R L Sbjct: 65 FIKKLKAMRPEIVTIAYSAFANYEMTANLLKAGAFFFLEKPFNLEELETHVKRGL 119 >gi|94969581|ref|YP_591629.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551631|gb|ABF41555.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 551 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +LL ED+ +R L + + AG +V + ++G A ++ + +LLTD+VMPEMDG Sbjct: 433 VLLVEDEQSLREVLTEFMQTAGVQVTAVSSGREAVARINSDAEVDILLTDLVMPEMDGRS 492 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ A P L++++++G L L KPF DL+ + +L Sbjct: 493 LAQIARTKRPSLQIIYMSGHTNDTLTQKELVADGLPYLQKPFTRADLLKALTAVL 547 >gi|219848910|ref|YP_002463343.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543169|gb|ACL24907.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1016 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R+ L + L + G+ VV +G A + R ++++ TD+ MP M G EL Sbjct: 897 ILVVDDETAVRQVLTRILERQGHRVVEATSGEEALAQYRPGRYAIICTDLGMPGMSGWEL 956 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A R ++D ++++ +TG++ D +L+KPF ++ + N + L+ Sbjct: 957 ASRVRQIDTTVRIVLVTGWSEQVDPADMQRYGVNAILAKPFTIQSVQNLIASLV 1010 >gi|16127455|ref|NP_422019.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|13424907|gb|AAK25187.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] Length = 731 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-M 59 ++ +L+ +D+ +R ++ L + GY + +GA+ ++ LL+TD+ +P + Sbjct: 610 DKTVLVVDDEPTVRMLVVDTLSELGYACLEAPDGAAGLRILQSGRQVDLLITDVGLPGGL 669 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A L P LKV+FITG+A A+ + +VL+KPF + DL V+R+L Sbjct: 670 NGRQVADGARALLPRLKVLFITGYAENAVLNHGHIEYGMEVLTKPFAVSDLTGRVDRML 728 >gi|319793448|ref|YP_004155088.1| histidine kinase [Variovorax paradoxus EPS] gi|315595911|gb|ADU36977.1| histidine kinase [Variovorax paradoxus EPS] Length = 564 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 10/115 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD +RR ++++L G+ V +GAS ++R+ LLL D +MP M+G E Sbjct: 445 EILVVEDDPGVRRSMVESLQVLGFRVRQAADGASGLLELRKAKPDLLLVDYLMPHMNGAE 504 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN----AKVLSKPFHLRDLVNEV 114 L A +L D+ ++ TG+A D NA + VL+KPF L L + V Sbjct: 505 LIAHAQKLYADIPILMATGYA------DMNAVERLIGPQSVLAKPFDLDTLGSAV 553 >gi|254520311|ref|ZP_05132367.1| response regulator receiver protein [Clostridium sp. 7_2_43FAA] gi|226914060|gb|EEH99261.1| response regulator receiver protein [Clostridium sp. 7_2_43FAA] Length = 249 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 7/124 (5%) Query: 5 ILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ ED+ +R R+ IK + + S +NG AYD + P +++TDI MP MDG Sbjct: 4 ILVVEDEGPIRDWIRYTIKNISDDFNIIGSVSNGKEAYDIALKNPPDVIITDIKMPVMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK----PFHLRDLVNEVNRL 117 IEL++R E+ P++ ++ +T FA + ++ + + L K P L +++N++N + Sbjct: 64 IELSKRIKEVIPEVYIIILTNFAEFSYAKEAISCGVYEYLIKSDIRPKELSEILNKINAI 123 Query: 118 LTIK 121 + K Sbjct: 124 IKSK 127 >gi|78485099|ref|YP_391024.1| response regulator receiver domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78363385|gb|ABB41350.1| response regulator receiver domain protein (CheY-like) [Thiomicrospira crunogena XCL-2] Length = 120 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL +D MR+ + +L AG++V +GA A D ++E F L++TDI MP M+GI Sbjct: 2 SKILAVDDSKSMRQMVSMSLKSAGHDVTEAEDGAMALDIAKKEQFDLIVTDINMPNMNGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + P+ K ++ +T ++ + + KPF L++ +NR+L Sbjct: 62 ELIQAVRTTLPNYKFTPILCLTTESSGDMKTKGKEAGATGWIVKPFSPEKLLSVINRVL 120 >gi|308272459|emb|CBX29063.1| hypothetical protein N47_J00440 [uncultured Desulfobacterium sp.] Length = 138 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 63/114 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + + L A KAGYEV + + A A ++ E+ F +++TD+ M + G+E Sbjct: 16 KILILDDEPIVCKRLKPAFQKAGYEVETYTSSADAMQRIPEKKFDIVITDLKMEGVSGME 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 P +++ ITGFA + + +S + ++KPF L D++ V +L Sbjct: 76 FLTEVKRQFPQTEIIVITGFATMEASKESLQKGVFRFVAKPFKLADILEIVEQL 129 >gi|220925979|ref|YP_002501281.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950586|gb|ACL60978.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 673 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDG 61 + +L+ ED+ +RR + L GY V+ NG +A + LL TDIVMP M G Sbjct: 549 ETVLVVEDETRVRRVTVSRLQGLGYRVLEAANGPAALSVLETAGIDLLFTDIVMPGGMTG 608 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + P +KV+F +G+A PD +AK L KP+ L DL + +L Sbjct: 609 ADLAEQVLARKPSVKVLFTSGYA----EPDVVKQGQITDAKWLRKPYTLLDLARALRTVL 664 >gi|332704569|ref|ZP_08424657.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554718|gb|EGJ51762.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 549 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLAED++ R + L G+ V + NG A + +R EPFSL+L D+ MP MDGIE Sbjct: 432 KVLLAEDNEINRLVALDLLRMRGHTVTAVKNGLEALEALRHEPFSLVLMDVRMPWMDGIE 491 Query: 64 LAR--RATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RA E DP + ++ +T +A A LSKP + L ++RL Sbjct: 492 ATKRIRAGEAGDPRVPIVALTAYALDGDRERFLAAGMDDYLSKPIDMEKLDRVIDRL 548 >gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 225 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD + + + L GYEV N G + V E+ L++ DI+MP++D Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ +R + D + ++ +TG ++A L KPF +LV V LL Sbjct: 61 GLEVCKRLRK-DAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALL 117 >gi|182413664|ref|YP_001818730.1| histidine kinase [Opitutus terrae PB90-1] gi|177840878|gb|ACB75130.1| histidine kinase [Opitutus terrae PB90-1] Length = 785 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILLAEDD +RR + L G+EV++ NG A + E L++ D++MP+ G Sbjct: 668 ILLAEDDPQVRRIGERVLAHNGFEVLTAANGEEAEQLIAEHHARLRLVVLDVLMPKRTGR 727 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNRLL 118 E+ P ++V+F +G++A L P AP+ +++KP+ R+L++ V++LL Sbjct: 728 EVFNTLRREYPRVRVLFCSGYSADML-PKEIAPEAGVALINKPYTARELLDRVHQLL 783 >gi|241666695|ref|YP_002984779.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862152|gb|ACS59817.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 905 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 + IL+AEDD+ +R +++ L GY V+ + SA + LL TD+VMP + Sbjct: 642 ETILVAEDDEGVRTTVVEMLTDLGYYVLKAKDAQSALTVIESGAHIDLLFTDVVMPGPLR 701 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELAR A E PD+ V++ +G+ ++ ++LSKP+ +L ++ +LTI Sbjct: 702 SPELARMARERLPDIAVLYTSGYTENSIVHGGRLDPGLELLSKPYTREELARKIRHVLTI 761 Query: 121 K 121 + Sbjct: 762 R 762 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R + L GY+V+ ++G + +R +++ D+ +P M G Sbjct: 788 KLLLVEDDAFIRMDTAELLQDLGYDVIEADSGERGVEILRHTIVDIIVADVGLPGMSGQA 847 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 A +A E P + ++F TG +++ PD+N + +LSKPF Sbjct: 848 FAAKAREAFPSVGLVFATGNSSL---PDANHLPGSVLLSKPF 886 >gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ +D++ + L L +AG+E V+ +G +AYD ++ F L++ D+++PEMD Sbjct: 1 MTQRILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ + +L ++ +T + L D L+KPF R++V Sbjct: 61 GLEVCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADD-------YLTKPFSPREVVAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VRAIL 118 >gi|158523267|ref|YP_001531137.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfococcus oleovorans Hxd3] gi|158512093|gb|ABW69060.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfococcus oleovorans Hxd3] Length = 358 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 1/122 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++LL +D++ + L + L K GYE+ + +G D ++ E ++++D++MPEMDG Sbjct: 4 NNRLLLVDDEERILESLRRLLKKEGYEIFTATSGREGLDILQRETVGVVVSDMMMPEMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 IE +A+ L D + +TG A + + D+ N + KP++ LVN++ R Sbjct: 64 IEFLAQASTLRSDTVQILLTGHAKLEVALDAINRLGIFSFIVKPWNNYVLVNDLRRAFDT 123 Query: 121 KN 122 N Sbjct: 124 YN 125 >gi|312879447|ref|ZP_07739247.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782738|gb|EFQ23136.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 809 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + +LL ED+ + R + L GY V++ A + R + LL+TD+VMPEM+ Sbjct: 690 ETLLLVEDEPAILRVVKILLEGLGYRVLAAGTPREALELARRHRDDIRLLVTDVVMPEMN 749 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ELA + ++ +F++G+AA L + P A++L KPF +L +V +L + Sbjct: 750 GRELAEAVQSVSSRIRCLFMSGYAANVL-AERGIPAGARLLQKPFSSSELAAKVREVLDL 808 >gi|229830121|ref|ZP_04456190.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM 14600] gi|229791419|gb|EEP27533.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM 14600] Length = 223 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +MRR L+ AL YEVV +G +A + E + L+ D++MP+M G+E Sbjct: 2 KVLVAEDEQEMRRVLVTALHMNSYEVVDVADGQAALEAACEGTYDCLVFDVMMPKMTGVE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R+ ++ +T A V D L+KPF L +L+ + R LT +N Sbjct: 62 ALRQIRAGGDMTPILLLTAKAEVEDRIDGLDAGADDYLTKPFALGELLARI-RSLTRRN 119 >gi|330959436|gb|EGH59696.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 954 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M+ Sbjct: 835 ETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGMN 894 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E+ P LK +FITG+A A D +VL+KPF + L + V L+ Sbjct: 895 GRQMADAGREVRPYLKTLFITGYAENAAIGDEQLGPGMRVLTKPFAIDVLASRVQELM 952 >gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261] gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261] Length = 231 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L PD +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|222056452|ref|YP_002538814.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221565741|gb|ACM21713.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 457 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 56/110 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I++ +D+ MR FL+ L + GY V C + A A ++ F L+++D+ MP ++ Sbjct: 1 MAATIMVVDDEQSMREFLVILLEREGYAVQQCESAACALSLLQSSGFDLVISDVNMPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+EL R P+ V+ IT + ++ ++KPF + ++ Sbjct: 61 GMELLERIKSTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEV 110 >gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI LAEDD + + L + GYE+ S +G A + F L++ DI+MP ++GIE Sbjct: 3 KIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ +L ++ +T + V L+KPFH ++L+ + LL Sbjct: 63 LCRQLRSSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALL 117 >gi|188991140|ref|YP_001903150.1| histidine kinase [Xanthomonas campestris pv. campestris str. B100] gi|167732900|emb|CAP51096.1| Sensory box histidine kinase/response regulator [Xanthomonas campestris pv. campestris] Length = 540 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED +D+ L AGY +S ++G A + + + P L TD++MP M Sbjct: 415 NETILIVEDKEDVAVVAKMFLEGAGYRALSASSGREAIEVLEQHPEVDALFTDLIMPGGM 474 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +KV+ TG+A ++ V++KP+ ++L+ + LL Sbjct: 475 NGVVLAREARRMLPKIKVLLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 533 >gi|21231858|ref|NP_637775.1| histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768015|ref|YP_242777.1| histidine kinase [Xanthomonas campestris pv. campestris str. 8004] gi|21113578|gb|AAM41699.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573347|gb|AAY48757.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 540 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED +D+ L AGY +S ++G A + + + P L TD++MP M Sbjct: 415 NETILIVEDKEDVAVVAKMFLEGAGYRALSASSGREAIEVLEQHPEVDALFTDLIMPGGM 474 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +KV+ TG+A ++ V++KP+ ++L+ + LL Sbjct: 475 NGVVLAREARRMLPKIKVLLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 533 >gi|209695741|ref|YP_002263671.1| sigma-54 dependent response regulator [Aliivibrio salmonicida LFI1238] gi|208009694|emb|CAQ79994.1| sigma-54 dependent response regulator [Aliivibrio salmonicida LFI1238] Length = 478 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE V ++ +A +++EP ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLELAGYEWVEADSAETALLILKKEPVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKLNWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 N Sbjct: 123 N 123 >gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1629 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++ +++ L K GY NGA + ++ + + L+L D+ MPEMDG+ Sbjct: 1346 RILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEALKSKTYDLILMDVQMPEMDGLT 1405 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 R + P L+ FI A A+ D A A + LSKP DL +++ Sbjct: 1406 ATRYICQNWPRLERPFIIAMTANAMKGDREACLEAGMDDYLSKPVRFDDLQKALDK 1461 >gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483] gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483] Length = 224 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+ V C++G + + +++EPF LL+ DI+MP+++G+E Sbjct: 3 KILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEPFDLLILDIIMPKINGLE 62 Query: 64 LARRATEL-DPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R ++ + V+ +T + D+ A L KPF ++L + LL Sbjct: 63 LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGAD---DYLVKPFSFQELEARIKALL 118 >gi|304409962|ref|ZP_07391581.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS183] gi|307302325|ref|ZP_07582083.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica BA175] gi|304351371|gb|EFM15770.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS183] gi|306914363|gb|EFN44784.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica BA175] Length = 447 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE V +G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYECVDVASGEDAILALKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + D+ L+KPF L+N+V+R L +K Sbjct: 65 LLNFLQQHHPKLPVLLMTAYATIGSAVDAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|325917156|ref|ZP_08179386.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325536636|gb|EGD08402.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 763 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R L + L + GY VV + + ++ + LL++D+ +P M+ Sbjct: 642 ETVLIVDDEPSIRLLLAEVLQELGYSVVEAGDSVAGLGLLQSDARIDLLISDVGLPGGMN 701 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++A P LKV+FITGFA AL D + VL+KPF +R L V L+ Sbjct: 702 GRQMADAGRAHRPGLKVLFITGFAENALLDDRHLEAGMAVLTKPFSVRVLTARVRELIAT 761 Query: 121 K 121 + Sbjct: 762 Q 762 >gi|312960831|ref|ZP_07775336.1| response regulator [Pseudomonas fluorescens WH6] gi|311284489|gb|EFQ63065.1| response regulator [Pseudomonas fluorescens WH6] Length = 120 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 IL+ EDD+ +R ++ L + Y V+ + A V+ + L++TD+ +P+MDG + Sbjct: 8 ILVVEDDNIVRMLIVDVLEELEYTVLEAADAEEALKVVQNAQSIDLMMTDVGLPDMDGKQ 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA + EL P L ++F +G+A + + P +V+ KPF + L ++V +L+ Sbjct: 68 LATKVRELRPALPILFASGYAE-----NIDVPDGMQVIGKPFSIDKLRDKVKSMLS 118 >gi|193212447|ref|YP_001998400.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085924|gb|ACF11200.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 922 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDG 61 K+L+ EDD+ +R+F+++ L +AG+ + G A + ++ F LLLTD+VM M+G Sbjct: 787 KVLVVEDDELVRKFVVQTLDEAGFTIREAEGGEEALALIVKDGFIPDLLLTDLVMRGMNG 846 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E+ P ++V++++G+A ++ + L KPF + L+++V +L Sbjct: 847 RVLYEKIQEIIPSIRVIYMSGYAKDIISSQGIMNEGLTFLQKPFAVPVLLDKVRYVLENG 906 Query: 122 N 122 N Sbjct: 907 N 907 >gi|325849744|ref|ZP_08170891.1| putative transcriptional regulatory protein CutR [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479973|gb|EGC83053.1| putative transcriptional regulatory protein CutR [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 224 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + K+L K+GYEV S +G +A + + E + L++ D+ +P MDG+E Sbjct: 2 KILIVEDEQILNDTINKSLKKSGYEVESAFDGINAMEMIEIESYDLIILDLNLPHMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + D + KV+ ++ + + + L KPFHL +L V R LT +N Sbjct: 62 ILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARV-RSLTRRN 119 >gi|319649553|ref|ZP_08003709.1| hypothetical protein HMPREF1013_00313 [Bacillus sp. 2_A_57_CT2] gi|317398715|gb|EFV79397.1| hypothetical protein HMPREF1013_00313 [Bacillus sp. 2_A_57_CT2] Length = 120 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M KIL+ +D MR + L K GYE+V +GA A +K +E L+ DI MPEM Sbjct: 1 MAHKILIVDDAAFMRMMIKDILSKNGYEIVGEAADGAQAVEKYKETQPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + +L+P KV+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGITALKEIKKLNPSAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVLEAIGKTL 119 >gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus thermophilus ND03] Length = 229 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 68/115 (59%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + D +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRLQQ-EKDTYIMMMTARDSI-MDIVAGLDRGADDYIIKPFAIEELLARI 113 >gi|295085367|emb|CBK66890.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1263 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ L K Y + +C NG A +RE L+++DI+MPEM G Sbjct: 999 QRILIVEDNDDLRNYLVDML-KTSYNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1057 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + DL++ I AL + N + ++ ++KPF + L + L Sbjct: 1058 EL---CSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNL 1114 Query: 118 L 118 L Sbjct: 1115 L 1115 >gi|260426146|ref|ZP_05780125.1| two-component hybrid sensor and regulator [Citreicella sp. SE45] gi|260420638|gb|EEX13889.1| two-component hybrid sensor and regulator [Citreicella sp. SE45] Length = 546 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 5/105 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE-M 59 + IL+ ED+ D+ + + G EV++ +G +A +++ R E F LLL DIVMP + Sbjct: 384 ETILVVEDETDLLEMTSEIIRTLGNEVITAPSGRAALERIERRAESFDLLLADIVMPGGV 443 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 G ELARR +L P + V++++G+A++ P A L KP Sbjct: 444 GGFELARRLNDLRPGIPVIYMSGYASITRESMDGVP--APTLRKP 486 >gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 231 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E+ + R E D+ VM IT + L D ++KPF +R+L+ Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADD-------YITKPFSIRELMA 115 Query: 113 EVNRLL 118 V LL Sbjct: 116 RVKALL 121 >gi|32477766|ref|NP_870760.1| two-component response regulator [Rhodopirellula baltica SH 1] gi|32448320|emb|CAD77837.1| probable two-component response regulator [Rhodopirellula baltica SH 1] Length = 137 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 +++L+AEDD +R L L +AG EV + +G A+D+++ E F +L+TD MPE+ Sbjct: 11 KKRVLIAEDDPVLRHLLQFTLDRAGMEVTAVADGQLAWDEIQSGEKFDVLVTDHEMPELS 70 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS--NAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R E + V+ + ++PD + P ++SKPF + LV+ + L Sbjct: 71 GVDLIGRVVETS-SISVIVLCTAKGFEIDPDRIVDRPGLVSLVSKPFSPKQLVSIIEERL 129 >gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] Length = 232 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L PD +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|218661744|ref|ZP_03517674.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli IE4771] Length = 472 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + E ++++D+VMPEMDG Sbjct: 355 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALSIMEELEGKVDIVVSDVVMPEMDGP 414 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V L Sbjct: 415 TLLRELRKNYPDLKFIFVSGYAEDAFA--RNLPPDAKFGFLPKPFSLKQLAVVVKETL 470 >gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 231 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E+ + R E D+ VM IT + L D ++KPF +R+L+ Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADD-------YITKPFSIRELMA 115 Query: 113 EVNRLL 118 V LL Sbjct: 116 RVKALL 121 >gi|24374742|ref|NP_718785.1| flagellar regulatory protein C [Shewanella oneidensis MR-1] gi|24349404|gb|AAN56229.1|AE015760_8 flagellar regulatory protein C [Shewanella oneidensis MR-1] Length = 446 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ + +G A +++ F L+++D+ MP + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALKQHQFDLVISDVQMPGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + + L+KPF L+N+V+R L +K Sbjct: 65 LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|294146508|ref|YP_003559174.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] gi|292676925|dbj|BAI98442.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] Length = 575 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 5/110 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EMD 60 Q+ILL EDDD + + L GYE+ +NG +A ++ R + FSL+L+D++MP E+ Sbjct: 453 QRILLVEDDDTVADTVGGMLTTLGYEMERVDNGDAALRRLERADDFSLILSDMIMPGEVG 512 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ELA R P L M +TG++A A S A + +L+KPF ++DL Sbjct: 513 GMELALRVRTHWPHLGTMLMTGYSAAAA---SAAKEGVPLLAKPFTIQDL 559 >gi|167033986|ref|YP_001669217.1| response regulator receiver protein [Pseudomonas putida GB-1] gi|166860474|gb|ABY98881.1| response regulator receiver protein [Pseudomonas putida GB-1] Length = 120 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EMD 60 +++L+ EDD +R + +A+ GYEV C+N A +++ E SL++TD+ MP +D Sbjct: 2 RRVLVVEDDQILRWLMTEAVEHLGYEVSECSNADDAVVQLQGESSISLVITDVKMPGSID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+ LA+ DL V+ ++G + L P P NA+ L KP L +L ++ LL+ Sbjct: 62 GLGLAQLIWSTYYDLPVIIVSGHS--VLTP-GFLPLNARFLKKPCTLDELSLTISELLS 117 >gi|320354140|ref|YP_004195479.1| putative Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122642|gb|ADW18188.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 476 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 4 KILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D+ DM L K L K GY+V + + A +++R + ++LTDI MP MDG+ Sbjct: 8 KVLVVDDERDMLTLLTKVLVKKGGYDVTAATSAEEALERMRGDSPDVVLTDIKMPGMDGL 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L ++ +DP + + +TG+ + + + + KPF ++ V R Sbjct: 68 ALLQQIGMIDPAVTTILMTGYGTIGMAVQALKDGAYDFIEKPFDNERIIRTVGR 121 >gi|320104997|ref|YP_004180588.1| Fis family two component sigma54 specific transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319752279|gb|ADV64039.1| two component, sigma54 specific, transcriptional regulator, Fis family [Isosphaera pallida ATCC 43644] Length = 465 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 61/107 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD+ + + ++L + GYE V +G SA + E+ F ++LTD++M E+ G+E Sbjct: 6 RVLVVDDDEAHAQAVAESLERVGYECVVATDGRSALRLIEEQTFDIVLTDLMMGEIGGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +A PD++V+ +TG + + A L+KP + +L Sbjct: 66 VLAKAKRELPDVEVIILTGHGTIRTAVTAMQAGAATYLTKPLDIDEL 112 >gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] Length = 1378 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ DMR +LI+ L AGY+V + ++G A +R + F L+++D++MP +DG+ L Sbjct: 631 VLVADDNADMREYLIRLLLGAGYQVSAVDDGRQALGAIRTKAFDLVVSDVMMPHLDGLAL 690 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A RA + V+ ++ A + + L KPF +L+ V Sbjct: 691 VAALRADPRTASVPVLLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARV 742 >gi|777754|gb|AAA93530.1| transcriptional activator [Pseudomonas aeruginosa] Length = 473 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L G+E V+ ++ +A + E FSL+++D+ MP MD Sbjct: 1 MAAKVLLVEDDRALREALSDTLLLGGHEFVAVDSAEAALPVLAREAFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T + AV ++ A L KPF R L++ V R Sbjct: 61 GHQLLGLIRTRYPHLPVLLMTAYGAVDRAVEAMRQGAADYLVKPFEARALLDLVAR 116 >gi|332981447|ref|YP_004462888.1| response regulator receiver protein [Mahella australiensis 50-1 BON] gi|332699125|gb|AEE96066.1| response regulator receiver protein [Mahella australiensis 50-1 BON] Length = 120 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEV-VSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +K+L+ +D MR + L K GYEV NG A +K +E+ L++ DI MPEM Sbjct: 1 MAKKVLIVDDAAFMRMMIKDILTKNGYEVSAEAENGLKAVEKYKEDKPDLVIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DGIE ++ LDP+ ++ + A+ ++ + KPF ++ V + Sbjct: 61 DGIESVKKIKNLDPNANIIMCSAMGQQAMVIEAIQAGAKDFIVKPFQADRVIEAVKK 117 >gi|226314402|ref|YP_002774298.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097352|dbj|BAH45794.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 459 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 56/109 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +IL+ +D+ D R L L + GY + ++G SA V E ++L D+ MP MDG Sbjct: 4 DTRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + E P ++++ +TG + ++ L+KP++L +L Sbjct: 64 LSFLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNEL 112 >gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] Length = 1390 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ DMR +L L AGYEV + ++G A + +R E L+++D++MP +DG+E Sbjct: 638 RILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAELPDLVVSDVMMPGLDGLE 697 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L A RA L V+ ++ A + + L KPF +L+ V+ Sbjct: 698 LVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVH 751 >gi|148266428|ref|YP_001233134.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399928|gb|ABQ28561.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 466 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+DD R F+ L GY+V ++G A +K+ +++TDI+MP ++G+E Sbjct: 5 RILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRVNGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + P++ + + FA + + L KPF+L +L V R L Sbjct: 65 FIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGL 119 >gi|115526851|ref|YP_783762.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115520798|gb|ABJ08782.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 723 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++LL +DD +R L + G VV +G +A D + +P F L++ D MP M Sbjct: 596 RRVLLVDDDSAVRDVAASMLREQGCVVVEAGSGGAALDLLERDPVPFDLMVIDFAMPGMT 655 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+AR P L ++FITG+A +A + A ++ KPF +L++ V RLL Sbjct: 656 GAEVAREVKLRRPGLPMIFITGYADLAAVKNLGAD---AIVQKPFRDDELLHRVRRLL 710 >gi|296390535|ref|ZP_06880010.1| two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 473 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L G+E V+ ++ +A + E FSL+++D+ MP MD Sbjct: 1 MAAKVLLVEDDRALREALSDTLLLGGHEFVAVDSAEAALPVLAREAFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T + AV ++ A L KPF R L++ V R Sbjct: 61 GHQLLGLIRTRYPHLPVLLMTAYGAVDRAVEAMRQGAADYLVKPFEARALLDLVAR 116 >gi|258404995|ref|YP_003197737.1| multi-sensor signal transduction histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797222|gb|ACV68159.1| multi-sensor signal transduction histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 650 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 36/106 (33%), Positives = 58/106 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +LL +D++ +R+ L L +GY V + NG A + RE ++LTDI MP MD Sbjct: 1 MDNALLLVDDEEGIRKVLGITLADSGYTVHTAANGNEALEVWREHRPGIVLTDIKMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G+EL + DP+ +V+ ITG + +S A ++KP + Sbjct: 61 GLELLQALKAEDPETEVIMITGHGDMDSAIESLRNDAADFITKPIN 106 >gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 231 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E+ + R E D+ VM IT + L D ++KPF +R+L+ Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADD-------YITKPFSIRELMA 115 Query: 113 EVNRLL 118 V LL Sbjct: 116 RVKALL 121 >gi|167821000|ref|ZP_02452680.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei 91] Length = 593 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 446 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 505 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 506 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 563 >gi|254300980|ref|ZP_04968424.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 406e] gi|157810679|gb|EDO87849.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 406e] Length = 593 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD D+R ++ L + GY+V++ ++G + + P LL TD++MP + Sbjct: 446 ETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIK 505 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P + V+F +G+ + +L KP+ +L ++V +L Sbjct: 506 GGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVL 563 >gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+ +DD + FL L K YEV NG A DK+R E F+L+L DI+MP++D Sbjct: 1 MSYKMLIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-------KPFHLRDLVNE 113 G E +R L ++ ++F+T DS K +S KPF L +L Sbjct: 61 GFEAIKRIRRL-TNIPIIFLTA-------KDSQQDKIKGFISGCDDYITKPFDLVELSLR 112 Query: 114 VNRLL 118 V+ +L Sbjct: 113 VSAIL 117 >gi|194364199|ref|YP_002026809.1| LytTR family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347003|gb|ACF50126.1| two component transcriptional regulator, LytTR family [Stenotrophomonas maltophilia R551-3] Length = 256 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 3/92 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M + L+AED++ +R+ L++ LG+ E V C +GASA +++ E+ + DI MP Sbjct: 1 MPLEALIAEDEELLRQSLVEQLGRLWPELKLVAECEDGASALEQLAEKQPDIAFLDIRMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALN 89 + GIE+AR +EL P +V+F+T + A++ Sbjct: 61 GISGIEVARSLSELSPRTQVVFVTAYDQYAID 92 >gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 231 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDG 62 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E+ + R E D+ VM IT + L D ++KPF +R+L+ Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADD-------YITKPFSIRELMA 115 Query: 113 EVNRLL 118 V LL Sbjct: 116 RVKALL 121 >gi|86159073|ref|YP_465858.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775584|gb|ABC82421.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 483 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 46/80 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDD+ R L + LG AGY V + G A ++ P +L D+VMPE DG E+ Sbjct: 7 VLVIEDDDEARAPLCEFLGAAGYRVRAARGGGEALAELGAAPAGAVLLDLVMPEPDGFEV 66 Query: 65 ARRATELDPDLKVMFITGFA 84 RR E DP L V+ ++ + Sbjct: 67 LRRVRERDPALPVIVLSALS 86 >gi|75908456|ref|YP_322752.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413] gi|75702181|gb|ABA21857.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413] Length = 1156 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+ D+R ++ L ++GY+V + NG + KV+E +L++TD++MP + G+ Sbjct: 798 HSILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKVQELVPNLIVTDLMMPLVTGL 857 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R R E ++ +T +S L+KPF+ R+L+ EV LL + Sbjct: 858 EMIRMIRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 917 Query: 121 K 121 K Sbjct: 918 K 918 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +D+ D L + + Y+V+ +G +A D + +E +++++D MP M G Sbjct: 10 KILVVDDEPDNLDLLYRTFYR-DYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E PD+ + +TG+ V L NA K K ++KP+ +L V + L Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQALDTH 128 Query: 122 N 122 N Sbjct: 129 N 129 >gi|187736215|ref|YP_001878327.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] gi|187426267|gb|ACD05546.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] Length = 234 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDDD +R L L +GYEV++ G +A VRE F L L D+ MP DG ++ Sbjct: 8 ILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMPGADGFQV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + +E P V+ +T A + + + K+ + KPF +R+L+ + +L Sbjct: 68 LQVMSEERPGTPVIMLT-----ARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVL 121 >gi|156742755|ref|YP_001432884.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234083|gb|ABU58866.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 266 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 53/85 (62%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++ILL +D+ ++R L L +AGY+V + + GA A + E+ F LL+ D+ MP +DG Sbjct: 4 SERILLVDDEANIRLTLSAMLTRAGYDVTTASGGAEAITLLEEQTFDLLIVDLKMPGVDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 +++ A PD+ ++ +TG ++ Sbjct: 64 MQVVTSARAHHPDVPIIILTGHGSL 88 >gi|77457761|ref|YP_347266.1| two component, sigma-54 specific, Fis family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|12056608|gb|AAG47966.1|AF312695_6 FleR [Pseudomonas fluorescens] gi|77381764|gb|ABA73277.1| two-component response regulator [Pseudomonas fluorescens Pf0-1] Length = 463 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 58/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L AG++ + + A + V E FSL+++D+ MP MD Sbjct: 1 MGIKVLLVEDDRSLREALADTLLLAGHDYHAVGSAEEALNAVEREAFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L++ V R Sbjct: 61 GHQLLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVAR 116 >gi|262195034|ref|YP_003266243.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262078381|gb|ACY14350.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 158 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA--------SAYDKVREEPFSLLLT 52 + ++I+LAEDD RRFL+ AL G+EV++ NG +AY PF ++T Sbjct: 16 VRRRIILAEDDAAFRRFLVDALSVEGFEVIAAKNGLELLDLLNFAAYPDQGLTPFDAVVT 75 Query: 53 DIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 D +P + G+E+ +V+ I+GFA A + + + L+KPF + +LV Sbjct: 76 DFHLPGLTGLEVLEGLAVAGAAGRVIVISGFADEATMRWARSIGASATLAKPFQIDELV 134 >gi|116252386|ref|YP_768224.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257034|emb|CAK08128.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 867 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL ED++ +RR + L GY V +G A + E ++++D+VMPEMDG Sbjct: 750 ILLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALAILEELDGKVDIVVSDVVMPEMDGP 809 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P AK L KPF L+ L V L Sbjct: 810 TLLRELRKTYPDMKFIFVSGYAEDAFA--RNLPPEAKFGFLPKPFSLKQLAVVVKETL 865 >gi|15596296|ref|NP_249790.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107100550|ref|ZP_01364468.1| hypothetical protein PaerPA_01001575 [Pseudomonas aeruginosa PACS2] gi|116049028|ref|YP_792170.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892937|ref|YP_002441806.1| two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254234235|ref|ZP_04927558.1| two-component response regulator [Pseudomonas aeruginosa C3719] gi|254239468|ref|ZP_04932790.1| two-component response regulator [Pseudomonas aeruginosa 2192] gi|9947016|gb|AAG04488.1|AE004540_8 two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115584249|gb|ABJ10264.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166166|gb|EAZ51677.1| two-component response regulator [Pseudomonas aeruginosa C3719] gi|126192846|gb|EAZ56909.1| two-component response regulator [Pseudomonas aeruginosa 2192] gi|218773165|emb|CAW28977.1| two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 473 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L G+E V+ ++ +A + E FSL+++D+ MP MD Sbjct: 1 MAAKVLLVEDDRALREALSDTLLLGGHEFVAVDSAEAALPVLAREAFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T + AV ++ A L KPF R L++ V R Sbjct: 61 GHQLLGLIRTRYPHLPVLLMTAYGAVDRAVEAMRQGAADYLVKPFEARALLDLVAR 116 >gi|149922417|ref|ZP_01910850.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149816697|gb|EDM76188.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 461 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 50/83 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +R F+ + L GY+V +G A K+R FSL+LTD+ MP MDG+ Sbjct: 6 RILVTDDEEGIREFIAEVLEDEGYDVEVAGDGEEAQGKLRRSGFSLVLTDLKMPRMDGMA 65 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L R P+++++ +T +V Sbjct: 66 LVRWLRSEQPEVEIVVMTAHGSV 88 >gi|170700456|ref|ZP_02891462.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170134621|gb|EDT02943.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 589 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EMD 60 + IL+ EDD ++R ++ L + GY+V++ ++G +A + + LL TD++MP + Sbjct: 465 ETILVVEDDPEVRLTVVDMLAQLGYKVLTASDGEAALQILDCDTAIDLLFTDVIMPGRIK 524 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA P L V+F +G+ + +LSKP+ +L + +L Sbjct: 525 GGELARRAARRTPPLPVLFTSGYTRDEIFHSGRLDPGVMLLSKPYRRDELATRIRDML 582 >gi|197120865|ref|YP_002132816.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196170714|gb|ACG71687.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 481 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 63/115 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D +MR L +AG+ V +GASA +V+ E F ++LTD+ MP +DG+E Sbjct: 30 KVLVVDDQKNMRATTAILLRQAGHAVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGME 89 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + P+ +V+ +T + + ++ L+KPF +++ V + L Sbjct: 90 VLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKAL 144 >gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] Length = 1390 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ DMR +L L AGYEV + ++G A + +R E L+++D++MP +DG+E Sbjct: 638 RILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAELPDLVVSDVMMPGLDGLE 697 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L A RA L V+ ++ A + + L KPF +L+ V+ Sbjct: 698 LVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVH 751 >gi|313106060|ref|ZP_07792319.1| two-component response regulator [Pseudomonas aeruginosa 39016] gi|310878821|gb|EFQ37415.1| two-component response regulator [Pseudomonas aeruginosa 39016] Length = 471 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L G+E V+ ++ +A + E FSL+++D+ MP MD Sbjct: 1 MAAKVLLVEDDRALREALSDTLLLGGHEFVAVDSAEAALPVLAREAFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T + AV ++ A L KPF R L++ V R Sbjct: 61 GHQLLGLIRTRYPHLPVLLMTAYGAVDRAVEAMRQGAADYLVKPFEARALLDLVAR 116 >gi|114777311|ref|ZP_01452322.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114552456|gb|EAU54939.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 582 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 71/120 (59%), Gaps = 8/120 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 +KILL +D+D +R +AL Y VV+ NGA A + + +++++D+VMP+M+ Sbjct: 454 EKILLVDDEDAVREVTAEALRGYNYRVVTAANGAQALEAFASHRDDLAIVISDVVMPKMN 513 Query: 61 G-IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G I +A+ +E P L V+F +G++ ++ PD + + + KPF +L +++LL+ Sbjct: 514 GDIAVAKMRSE-KPGLPVIFTSGYSDIS-PPDEDC---TQFIRKPFSPPELSTHIHQLLS 568 >gi|327539712|gb|EGF26319.1| two-component response regulator [Rhodopirellula baltica WH47] Length = 137 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 +++L+AEDD +R L L +AG EV + +G A+D+++ E F +L+TD MPE+ Sbjct: 11 KKRVLIAEDDPVLRHLLQFTLDRAGMEVTAVADGQLAWDEIQSGEKFDVLVTDHEMPELS 70 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS--NAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R E + V+ + ++PD + P ++SKPF + LV+ + L Sbjct: 71 GVDLIGRVVETT-SISVIVLCTAKGFEIDPDRIVDRPGLVSLVSKPFSPKQLVSIIEERL 129 >gi|327191887|gb|EGE58878.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CNPAF512] Length = 867 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + E ++++D+VMPEMDG Sbjct: 750 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALSIMEELEGKVDIVVSDVVMPEMDGP 809 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V L Sbjct: 810 TLLRELRKNYPDLKFIFVSGYAEDAFA--RNLPPDAKFGFLPKPFSLKQLAVVVKETL 865 >gi|308270673|emb|CBX27284.1| hypothetical protein N47_I07040 [uncultured Desulfobacterium sp.] Length = 558 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 67/115 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++ +D++ + + ++K L K Y+V + A +K+ EE +SL+++D+VMPEM+G+E Sbjct: 11 RIMVVDDENGICQNVVKILSKNNYKVACALSAKEALEKMSEESYSLIISDLVMPEMNGLE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R + P++K + +T +A+ + L KPF +L + V+ L Sbjct: 71 LLKRVKKDYPEMKSLMMTAYASTDTAMKAIRLGALDYLPKPFTPDELRSTVSHAL 125 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ +L+ +D+ + + K L K GY++ ++ A +K+ + L+L D+ +P ++ Sbjct: 437 LSKTVLIIDDEIAVNNNMRKILAKKGYKIDQASDKKQALEKIGSGQYGLVLLDLRIPGVE 496 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+EL + PD K++ +TG+A++ ++ ++KPF +L ++ L I Sbjct: 497 GLELLKAVRTNLPDAKIIIVTGYASIETAVEAARFGAVDYIAKPFTPAELRTATDKALRI 556 >gi|240139815|ref|YP_002964292.1| two-component DctB-like sigma-54 specific transcriptional regulator, Fis subfamily; with N-terminal response regulator receiver and ATPase domains [Methylobacterium extorquens AM1] gi|240009789|gb|ACS41015.1| two-component DctB-like sigma-54 specific transcriptional regulator, Fis subfamily; with N-terminal response regulator receiver and ATPase domains [Methylobacterium extorquens AM1] Length = 450 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++I+ +D++D+RR ++L G++V + G A +R EP +++TD+ +P +DG Sbjct: 9 SERIVFIDDEEDVRRANRQSLELDGFQVETFEAGEPALAAIRAEPPGVVVTDVRLPGLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R DPDL V+ ITG +++ + L+KP+ L+ V R L Sbjct: 69 RALLERIQAEDPDLPVILITGHGDISMAVAAMRSGAYDFLAKPYPAEALMGSVRRAL 125 >gi|154174037|ref|YP_001408153.1| DNA-binding response regulator [Campylobacter curvus 525.92] gi|112802824|gb|EAU00168.1| DNA-binding response regulator [Campylobacter curvus 525.92] Length = 220 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + + + L + GYEVVSC N A D E+ F LL+ D+ +P+ DG Sbjct: 3 RILLVEDDETLLEMISEYLNENGYEVVSCTNAQDAADLAYEQTFDLLILDVKIPKGDGFS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +L +F T + A L KP+ L++L+ + LL Sbjct: 63 LLSSLRKLGITTPSIFTTSLNTLDDLETGYASGCDDYLKKPYELKELLIRIQSLL 117 >gi|319407199|emb|CBI80838.1| Sensor protein [Bartonella sp. 1-1C] Length = 850 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED+ +R ++AL GY V+ +G A + + ++++D+VMPEMDG Sbjct: 733 VLLVEDEYSVRMSSVRALQMRGYTVLEAASGVEALAILEKNKGAVDIIVSDVVMPEMDGP 792 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 L A + PD+K++F++G+ A N P++ LSKPF L+ L V L Sbjct: 793 TLLIEARKNYPDIKIIFVSGYTKDAFT--KNLPEDTVFGFLSKPFTLKQLALAVKETL 848 >gi|262409249|ref|ZP_06085793.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294645954|ref|ZP_06723622.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806056|ref|ZP_06764914.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262352996|gb|EEZ02092.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292638699|gb|EFF57049.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294446739|gb|EFG15348.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1341 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ L K Y + +C NG A +RE L+++DI+MPEM G Sbjct: 1077 QRILIVEDNDDLRNYLVDML-KTSYNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1135 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + DL++ I AL + N + ++ ++KPF + L + L Sbjct: 1136 EL---CSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNL 1192 Query: 118 L 118 L Sbjct: 1193 L 1193 >gi|241204893|ref|YP_002975989.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858783|gb|ACS56450.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 867 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL ED++ +RR + L GY V +G A + E ++++D+VMPEMDG Sbjct: 750 ILLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALAILEELDGKVDIVVSDVVMPEMDGP 809 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P AK L KPF L+ L V L Sbjct: 810 TLLRELRKTYPDMKFIFVSGYAEDAFA--RNLPPEAKFGFLPKPFSLKQLAVVVKETL 865 >gi|154686050|ref|YP_001421211.1| hypothetical protein RBAM_016170 [Bacillus amyloliquefaciens FZB42] gi|308173596|ref|YP_003920301.1| regulator of chemotaxis and motility [Bacillus amyloliquefaciens DSM 7] gi|154351901|gb|ABS73980.1| CheY [Bacillus amyloliquefaciens FZB42] gi|307606460|emb|CBI42831.1| regulator of chemotaxis and motility [Bacillus amyloliquefaciens DSM 7] gi|328553472|gb|AEB23964.1| regulator of chemotaxis and motility [Bacillus amyloliquefaciens TA208] gi|328911737|gb|AEB63333.1| regulator of chemotaxis and motility [Bacillus amyloliquefaciens LL3] Length = 120 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G++VV+ ++GA A +K +E L+ DI MPEM Sbjct: 1 MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++DP K++ + ++ D+ + KPF ++ +N+ L+ Sbjct: 61 DGITALKEIKQIDPQAKIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS 120 >gi|86158331|ref|YP_465116.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774842|gb|ABC81679.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 473 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 50/82 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++RR L L + GYEV + +G A + P +++TD+VMP + G+EL Sbjct: 4 VLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHRTPVHVVVTDLVMPRVGGMEL 63 Query: 65 ARRATELDPDLKVMFITGFAAV 86 RR ++ PD+ V+ IT +V Sbjct: 64 LRRVSQDFPDVPVILITAHGSV 85 >gi|237713842|ref|ZP_04544323.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445998|gb|EEO51789.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1330 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ L K Y + +C NG A +RE L+++DI+MPEM G Sbjct: 1066 QRILIVEDNDDLRNYLVDML-KTSYNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1124 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + DL++ I AL + N + ++ ++KPF + L + L Sbjct: 1125 EL---CSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNL 1181 Query: 118 L 118 L Sbjct: 1182 L 1182 >gi|153809842|ref|ZP_01962510.1| hypothetical protein RUMOBE_00223 [Ruminococcus obeum ATCC 29174] gi|149834020|gb|EDM89100.1| hypothetical protein RUMOBE_00223 [Ruminococcus obeum ATCC 29174] Length = 529 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 70/114 (61%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALG---KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 K+++A+D++ + R LI ALG + G +VV + NG A + +R+E +L+TDI MP + Sbjct: 3 KLVVADDEERVCR-LIVALGNWEELGIKVVGTAANGIQALELIRKEKTDILITDIRMPGL 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 +G+EL + E+ PD+K+M I+G+A ++ + L KP + +D +NE Sbjct: 62 NGLELIEKVREISPDIKIMIISGYANFEYAQNALKQGVSDYLLKPIN-KDALNE 114 >gi|257414385|ref|ZP_05592023.1| DNA-binding response regulator TcrA [Roseburia intestinalis L1-82] gi|257200234|gb|EEU98518.1| DNA-binding response regulator TcrA [Roseburia intestinalis L1-82] Length = 132 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 60/112 (53%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ ED+ M + K L AGYEV +C +G A++ V E + L++ D+ +P MDG+E+ Sbjct: 1 MIVEDEKQMCDMVAKRLYDAGYEVDTCYDGEEAFESVLTENYDLIVLDLNLPGMDGMEIL 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + + + KV+ ++ +A + + KPFHL++L + L Sbjct: 61 KELRQRNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 112 >gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2] gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2] gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2] Length = 224 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+ V C++G + + +++EPF LL+ DI+MP+++G+E Sbjct: 3 KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEPFDLLILDIIMPKINGLE 62 Query: 64 LARRATEL-DPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R ++ + V+ +T + D+ A L KPF ++L + LL Sbjct: 63 LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGAD---DYLVKPFSFQELEARIKALL 118 >gi|163852478|ref|YP_001640521.1| sigma-54 factor interaction domain-containing protein [Methylobacterium extorquens PA1] gi|163664083|gb|ABY31450.1| sigma-54 factor interaction domain-containing protein [Methylobacterium extorquens PA1] Length = 450 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++I+ +D++D+RR ++L G++V + G A +R EP +++TD+ +P +DG Sbjct: 9 SERIVFIDDEEDVRRANRQSLELDGFQVETFEAGEPALAAIRAEPPGVVVTDVRLPGLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R DPDL V+ ITG +++ + L+KP+ L+ V R L Sbjct: 69 RALLERIQAEDPDLPVILITGHGDISMAVAAMRSGAYDFLAKPYPAEALMGSVRRAL 125 >gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 909 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D +D R L+ L K +EVV NG A +KV EPF L+L DI MP MDG Sbjct: 789 RILVVDDTEDNRFLLLTYLKKLPFEVVQAENGKEAVEKVLAEPFDLILMDIQMPVMDGYA 848 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNRLL 118 R R E D LK + I +A A+ D + ++ ++KP L+ ++R L Sbjct: 849 ATRKIRQWEKDQGLKPIPIIAVSANAMAEDMQKSLDVGCSEHVTKPIKKSALLEMIHRYL 908 >gi|281422715|ref|ZP_06253714.1| two component transcriptional regulator, winged helix family [Prevotella copri DSM 18205] gi|281403194|gb|EFB33874.1| two component transcriptional regulator, winged helix family [Prevotella copri DSM 18205] Length = 228 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL A+DD L L + GY+V NG A+++ E L+L DI MPEMDG E Sbjct: 3 KILFADDDLKYSMLLKSFLQQHGYDVTYAGNGKKAWEQFPEVKPDLVLLDINMPEMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +A R +DP + + F+T + K L+KPF+ +L+ + ++ Sbjct: 63 VAERIRTIDPKVLIFFLTDRTEKNDRLKGFSLKANDYLAKPFYPEELLARIEERFSM 119 >gi|198275803|ref|ZP_03208334.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135] gi|198271432|gb|EDY95702.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135] Length = 1393 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 11/125 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ ED+D++R +L+ LG + + V+SC+NG A D + L+L+DI+MPE++GI Sbjct: 1132 HSILIVEDEDEIRNYLLTELG-SHFRVLSCSNGKEALDLIMHHMPDLVLSDIMMPEVNGI 1190 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 L R+ L ++K I A N + + + + ++KPF+L L+ + L Sbjct: 1191 TLLRK---LKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIENL 1247 Query: 118 LTIKN 122 IKN Sbjct: 1248 --IKN 1250 >gi|95930010|ref|ZP_01312750.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95133979|gb|EAT15638.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 447 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 57/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ R L L K GY+V++ +NG A + P SL+L D+ MP ++G E+ Sbjct: 3 ILVVDDEQVQREMLQGFLNKRGYKVLTASNGEEALELCARYPISLVLMDLCMPGLNGDEV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + E +P L+V+ IT F +V + L KP L +L + R Sbjct: 63 LEKLRESNPLLRVILITAFGSVETAVKVMKLGASDFLEKPVDLTELAQRIER 114 >gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA] gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA] Length = 232 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L L P+ +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|197105721|ref|YP_002131098.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196479141|gb|ACG78669.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 814 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 4/115 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +LL +DD +R L + GY V+ +G +A D +R LLL D MP M+G+E Sbjct: 690 VLLVDDDSAVREVTASLLREFGYGVIEAGSGNAALDALRGAARIDLLLADYAMPGMNGVE 749 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A L P L +FITGFA +A + +++ KPF +L +V +L Sbjct: 750 TVREAQRLRPGLPSLFITGFADLAALREVG---EERIIQKPFRDDELGRKVAAIL 801 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYE--VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +LL ED + L L KAG E ++ N + EE ++L D +P+ DG+ Sbjct: 15 VLLLEDSEIDAELLAAHLEKAGIEFTLLRATNRREFVHALEEERCDIILADYSLPDFDGL 74 Query: 63 ELARRATELDPDLKVMFITG 82 A L PD+ +F++G Sbjct: 75 SALNIARALQPDIPFIFVSG 94 >gi|319781285|ref|YP_004140761.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167173|gb|ADV10711.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 126 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS--AYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R +AL +AG+ + +GA A + + L+++DI MPEMDG Sbjct: 6 KLLIVEDDESVRTLAARALERAGHTIDIAADGAQGLALIQAARGGYDLVVSDIRMPEMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+A A L P +K++ +TG+A + V+ KPF L ++ + V R L Sbjct: 66 IEMAIAAAALFPAIKIVLMTGYADQRERAEELNGIILDVVQKPFTLAEIRSRVERAL 122 >gi|254459129|ref|ZP_05072551.1| response regulator receiver [Campylobacterales bacterium GD 1] gi|207084022|gb|EDZ61312.1| response regulator receiver [Campylobacterales bacterium GD 1] Length = 137 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 63/114 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L ED+++ R+F ++ L + + C NG A + + + SL+++DI MP+MDGIE Sbjct: 16 ELLYVEDNEEARQFTMELLSRFFKNIAVCENGLEALEIFKVKDISLIMSDINMPKMDGIE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++++ +++ D+ ++ ++ + +N L KP +L L+ +N Sbjct: 76 MSKKIRDINQDVPIILLSAHNESSFKDSANHAGVTDYLEKPLNLSRLIELLNSF 129 >gi|209885219|ref|YP_002289076.1| nitrogen regulation protein NR(I) [Oligotropha carboxidovorans OM5] gi|209873415|gb|ACI93211.1| nitrogen regulation protein NR(I) [Oligotropha carboxidovorans OM5] Length = 480 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALIRAGYEVRLTGNAATLWRWVSQGEGDLIITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKLRPNLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELITIVGRAL 119 >gi|163846059|ref|YP_001634103.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|163667348|gb|ABY33714.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] Length = 262 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ ++R + + L +AGY V++ +NG A + + P + L DI + +M G E+ Sbjct: 135 ILVIDDNPEVRALIERILVRAGYRVLAFHNGNDAIRAISDHPVACALIDITLADMHGYEV 194 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ + P + + ++G+A A N + P A L KPF +L+ V RLL Sbjct: 195 CRQIAAMHPHIPLALVSGYAVQAEN-LVDVPVMAT-LQKPFRASELLALVRRLL 246 >gi|222056478|ref|YP_002538840.1| multi-sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221565767|gb|ACM21739.1| multi-sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 767 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL +D++D+ K L + GY+V +C +G A R +P F L++TD MP+M Sbjct: 643 ERILFVDDEEDLLFAGKKMLERLGYQVEACRDGNEALQTFRLQPHCFDLVITDQTMPQMT 702 Query: 61 GIELARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLS-KPFHLRDLVNEVNR 116 G EL R ++ D+ V+ TGF + + A + L+ KPF ++ + R Sbjct: 703 GTELTRAILQIREDVPVILCTGFGHASKEFATREGQAATGIRELALKPFERAEMAKLIRR 762 Query: 117 LL 118 +L Sbjct: 763 VL 764 >gi|39996758|ref|NP_952709.1| response regulator/GGDEF domain-containing protein [Geobacter sulfurreducens PCA] gi|39983646|gb|AAR35036.1| response regulator/GGDEF domain protein [Geobacter sulfurreducens PCA] gi|298505770|gb|ADI84493.1| response receiver-modulated diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 458 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 4/105 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD R+ + L + GYEV + +G ++ ++ + L++TD+VMP M GI Sbjct: 2 ERILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLEKQEYHLVITDLVMPGMSGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPF 105 E+ R + P++ V+ +TG A L A KN + KPF Sbjct: 62 EVLSRVKQKAPNVDVILVTGHA--NLESAVYALKNGARDYILKPF 104 >gi|289627782|ref|ZP_06460736.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651627|ref|ZP_06482970.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. aesculi str. 2250] gi|330866442|gb|EGH01151.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 471 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 56/116 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD Sbjct: 1 MSTNVLLVEDDRSLREALGETLELAGYGYQAVGSAKEALVAAEAQPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|86357941|ref|YP_469833.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86282043|gb|ABC91106.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 867 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + E ++++D+VMPEMDG Sbjct: 750 VLLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALSIMEELEGKVDIVVSDVVMPEMDGP 809 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PDLK +F++G+A A N P +AK L KPF L+ L V L Sbjct: 810 TLLRELRKNYPDLKFIFVSGYAEDAFA--RNLPPDAKFGFLPKPFSLKQLAVVVKETL 865 >gi|91977061|ref|YP_569720.1| nitrogen metabolism transcriptional regulator NtrC [Rhodopseudomonas palustris BisB5] gi|91683517|gb|ABE39819.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Rhodopseudomonas palustris BisB5] Length = 480 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKMRPNLPVIVMSAQNTFMTAIRASEKGAYEYLPKPFDLKELIAIVGRAL 119 >gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597] gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597] Length = 231 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L PD +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|238916467|ref|YP_002929984.1| two-component system, chemotaxis family, response regulator CheY [Eubacterium eligens ATCC 27750] gi|238871827|gb|ACR71537.1| two-component system, chemotaxis family, response regulator CheY [Eubacterium eligens ATCC 27750] Length = 121 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D R+FL L AG+E+VS NGA +K + ++ DI MP MDGI Sbjct: 3 KILIVDDSKTSRKFLRNMLEDAGHEIVSEAVNGAEGVEKYKMYKPDVVTMDITMPVMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + E+DP KV+ +T ++ A + KPF ++N + ++L Sbjct: 63 EAVKEIMEIDPGAKVIMVTAAGQKTNMVEALKRGAADFIQKPFDSAVIINTIEKVL 118 >gi|149010945|ref|ZP_01832250.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147764581|gb|EDK71511.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 232 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L L P+ +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|153006652|ref|YP_001380977.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152030225|gb|ABS27993.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 735 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL + D R + +L KAG+ V + NG A +K P L+L+D MPEMDG Sbjct: 4 QHLLLVDGDPKSLRVMEVSLKKAGFSVTTAVNGRDALEKCAISPPDLILSDTKMPEMDGF 63 Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR E D +F+TG +V L+KP +++++V V LL Sbjct: 64 ELCRRLKEDDRHRGTPFIFLTGQKSVEFKVKGLELGVEDYLTKPIYIKEIVTRVKILL 121 >gi|15900027|ref|NP_344631.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656923|ref|ZP_01407745.1| hypothetical protein SpneT_02001832 [Streptococcus pneumoniae TIGR4] gi|116516719|ref|YP_815548.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985429|ref|ZP_01818634.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148987813|ref|ZP_01819276.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993923|ref|ZP_01823306.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148996490|ref|ZP_01824208.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149001833|ref|ZP_01826806.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007940|ref|ZP_01831518.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149017756|ref|ZP_01834215.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486666|ref|ZP_02711174.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|168489445|ref|ZP_02713644.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|168492607|ref|ZP_02716750.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|168493781|ref|ZP_02717924.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|168577082|ref|ZP_02722911.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|169834091|ref|YP_001693605.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182683051|ref|YP_001834798.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|194397353|ref|YP_002036799.1| response regulator [Streptococcus pneumoniae G54] gi|221231023|ref|YP_002510175.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225855866|ref|YP_002737377.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225860118|ref|YP_002741627.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|237649600|ref|ZP_04523852.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974] gi|237821536|ref|ZP_04597381.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974M2] gi|298230008|ref|ZP_06963689.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254523|ref|ZP_06978109.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501871|ref|YP_003723811.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254821|ref|ZP_07340921.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259126|ref|ZP_07345104.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303260883|ref|ZP_07346832.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303263210|ref|ZP_07349133.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303267317|ref|ZP_07353178.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269588|ref|ZP_07355349.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307066757|ref|YP_003875723.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126308|ref|YP_003878339.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|5830538|emb|CAB54578.1| response regulator [Streptococcus pneumoniae] gi|14971549|gb|AAK74271.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116077295|gb|ABJ55015.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757065|gb|EDK64104.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147760291|gb|EDK67280.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147760563|gb|EDK67538.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147922387|gb|EDK73507.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147926277|gb|EDK77350.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927630|gb|EDK78656.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931320|gb|EDK82298.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168996593|gb|ACA37205.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182628385|gb|ACB89333.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183570301|gb|EDT90829.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|183572088|gb|EDT92616.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|183573247|gb|EDT93775.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|183576175|gb|EDT96703.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|183577322|gb|EDT97850.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|194357020|gb|ACF55468.1| response regulator TCS08 [Streptococcus pneumoniae G54] gi|220673483|emb|CAR67954.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225725157|gb|ACO21009.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225727262|gb|ACO23113.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|298237466|gb|ADI68597.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793386|emb|CBW35751.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301799255|emb|CBW31775.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801044|emb|CBW33711.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598258|gb|EFL65304.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637720|gb|EFL68206.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639544|gb|EFL70001.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640862|gb|EFL71248.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643168|gb|EFL73454.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302646983|gb|EFL77207.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|306408294|gb|ADM83721.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483370|gb|ADM90239.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|327390491|gb|EGE88831.1| response regulator [Streptococcus pneumoniae GA04375] gi|332075745|gb|EGI86212.1| response regulator [Streptococcus pneumoniae GA17570] gi|332076537|gb|EGI86999.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077390|gb|EGI87851.1| response regulator [Streptococcus pneumoniae GA41301] gi|332202007|gb|EGJ16076.1| response regulator [Streptococcus pneumoniae GA41317] gi|332204102|gb|EGJ18167.1| response regulator [Streptococcus pneumoniae GA47901] Length = 232 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L L P+ +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|182678949|ref|YP_001833095.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634832|gb|ACB95606.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 847 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 2/113 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 ILL ED++ +R F +AL GY V+ +G A + V E L+++D+VMPEMDG Sbjct: 731 ILLVEDEEAVRAFGARALTSRGYTVLQAGSGLEALEVVEQNEGKIDLVVSDVVMPEMDGP 790 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + KV+F++G+A A + + L KPF L+ L+ V Sbjct: 791 TMFGELRKRGVMAKVIFVSGYAEEAFAKNLPEGQEFAFLPKPFSLKQLIEAVK 843 >gi|170742749|ref|YP_001771404.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197023|gb|ACA18970.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 845 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + L GY V++ +GA+ +REE +LL+TD+ +P ++ Sbjct: 726 ETVLVVDDEPTVRMLVTDVLEGLGYAVLAAGDGAAGLRLLREERRIALLVTDVGLPGGLN 785 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A PDL+V+FITG+A A +VL+KPF + L V LL Sbjct: 786 GRQMADAARADRPDLRVLFITGYAENAALGGGRLGPGMQVLTKPFAVETLAARVKELL 843 >gi|86749999|ref|YP_486495.1| nitrogen metabolism transcriptional regulator NtrC [Rhodopseudomonas palustris HaA2] gi|86573027|gb|ABD07584.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Rhodopseudomonas palustris HaA2] Length = 480 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKMRPNLPVIVMSAQNTFMTAIRASEKGAYEYLPKPFDLKELIAIVGRAL 119 >gi|219670775|ref|YP_002461210.1| Fis family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219541035|gb|ACL22774.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfitobacterium hafniense DCB-2] Length = 494 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 62/110 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++Q++L+ +D++D+R L + LG+ GYE++ ++E F +L DI +P+ D Sbjct: 3 VHQRVLILDDEEDLRSILAQRLGRRGYEIMEAATAQEGMALLQETIFEAVLLDIRLPDGD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G++L + + PDL+V+ +TG + ++ L+KP +L +L Sbjct: 63 GLQLLQAMKKRQPDLQVIMLTGHGTLESAIEAMKAGAYDYLTKPCNLSEL 112 >gi|320354933|ref|YP_004196272.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320123435|gb|ADW18981.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 142 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 58/110 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+++LL +D+ D L + + G V + + A DK EE + ++ D++MPEMD Sbjct: 1 MNERVLLIDDEQDFMDVLAERMRDRGMNVSTTTSPLEALDKAGEESYDAVILDLMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E R +PDL+++ +TG A V ++ L KP ++ L Sbjct: 61 GLEALTRLRAKNPDLQIILLTGHATVEKGIEAMKLGAMDFLEKPIDIQAL 110 >gi|294776315|ref|ZP_06741797.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294449832|gb|EFG18350.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1329 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 13/124 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED DD+R +L L +A Y+V +C NG A + E L+L+DI+MPEM G Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129 Query: 63 EL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-----KVLSKPFHLRDLVNEVN 115 EL A + L + V+ +T ALN + N + K L KPF++ L + Sbjct: 1130 ELCSAIKNNILTSHIPVILLT-----ALNDEKNIVEGLETGADKYLIKPFNIGILKASIA 1184 Query: 116 RLLT 119 +LT Sbjct: 1185 NILT 1188 >gi|254885151|ref|ZP_05257861.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319641338|ref|ZP_07996033.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254837944|gb|EET18253.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387019|gb|EFV67903.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1329 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 13/124 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED DD+R +L L +A Y+V +C NG A + E L+L+DI+MPEM G Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129 Query: 63 EL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-----KVLSKPFHLRDLVNEVN 115 EL A + L + V+ +T ALN + N + K L KPF++ L + Sbjct: 1130 ELCSAIKNNILTSHIPVILLT-----ALNDEKNIVEGLETGADKYLIKPFNIGILKASIA 1184 Query: 116 RLLT 119 +LT Sbjct: 1185 NILT 1188 >gi|225010631|ref|ZP_03701101.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Flavobacteria bacterium MS024-3C] gi|225005184|gb|EEG43136.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Flavobacteria bacterium MS024-3C] Length = 389 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 9/121 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN IL+ ED+ + R L+K L +A YE+ + +G SA + ++ + ++L+L DI MP+ Sbjct: 1 MNSNILVVEDEAAISRVLVKILSEAFETYEIEAAFDGQSAIEMIQSKDYALVLCDIKMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG+E+ +A E+ P + I+G + ++ +SKP ++NRLL Sbjct: 61 MDGVEVLIKAKEIAPFTSFIMISGHGDLETAVETMRLGAFDYISKP-------PDLNRLL 113 Query: 119 T 119 T Sbjct: 114 T 114 >gi|150006322|ref|YP_001301066.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149934746|gb|ABR41444.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1329 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 13/124 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED DD+R +L L +A Y+V +C NG A + E L+L+DI+MPEM G Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129 Query: 63 EL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-----KVLSKPFHLRDLVNEVN 115 EL A + L + V+ +T ALN + N + K L KPF++ L + Sbjct: 1130 ELCSAIKNNILTSHIPVILLT-----ALNDEKNIVEGLETGADKYLIKPFNIGILKASIA 1184 Query: 116 RLLT 119 +LT Sbjct: 1185 NILT 1188 >gi|327481220|gb|AEA84530.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas stutzeri DSM 4166] Length = 464 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 58/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L GY + + G +A + +EPF L+++D+ MP MD Sbjct: 1 MAAKVLLVEDDPSLREALGITLELGGYAHRAVDCGEAALIALEQEPFGLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G EL + P + V+ +T F AVA ++ L KPF L+ + R Sbjct: 61 GHELLASIRKRYPQIPVLLMTAFGAVAKAVEAMRQGAVDYLVKPFEPGTLLELLGR 116 >gi|224369370|ref|YP_002603534.1| HdrA4 [Desulfobacterium autotrophicum HRM2] gi|223692087|gb|ACN15370.1| HdrA4 [Desulfobacterium autotrophicum HRM2] Length = 1161 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ +D+ +R L L G+ V + +G A +++ PF+++ DI MP MDG Sbjct: 189 NFKILVVDDEQIVRESLKDWLEFEGFVVETATSGQGALERLEATPFAMMFLDIKMPGMDG 248 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RA E PDL + +T +A V + + + KPF +V+ V ++ Sbjct: 249 TEVLSRAKEQFPDLVAVMMTAYATVETAVSTMRSGALEYVIKPFDPEKVVSLVKKVF 305 >gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1290 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI+LA+D+ DMR + +K L YEV + +GA+A +R + L+LTD++MPE+DG E Sbjct: 649 KIVLADDNADMRNY-VKRLLSQQYEVEAVKDGAAALAAIRGQLPDLVLTDVMMPEVDGFE 707 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R RA +L ++ ++ A + L KPF R+L+ V Sbjct: 708 LLRELRANPQTKELPIILLSARAGEESRIEGLEAGADDYLIKPFSARELLARV 760 >gi|146340807|ref|YP_001205855.1| nitrogen assimilation regulatory protein [Bradyrhizobium sp. ORS278] gi|146193613|emb|CAL77630.1| Nitrogen assimilation regulatory protein [Bradyrhizobium sp. ORS278] Length = 480 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKMRPNLPVIVMSAQNTFMTAIKASERGAYEYLPKPFDLKELIAIVGRAL 119 >gi|15902120|ref|NP_357670.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|15457611|gb|AAK98880.1| Response regulator [Streptococcus pneumoniae R6] Length = 232 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 64/118 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRCLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L L P+ +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLVADDFIAKPFSPRELVLRVHNIL 118 >gi|330969006|gb|EGH69072.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 241 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 120 DETILVVDDEPAVRLLITELLEDLGYIVLQAERGADALTILQSKAAIDLLITDVGLPGGM 179 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 180 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 238 >gi|218289209|ref|ZP_03493444.1| two component transcriptional regulator, Fis family [Alicyclobacillus acidocaldarius LAA1] gi|218240557|gb|EED07737.1| two component transcriptional regulator, Fis family [Alicyclobacillus acidocaldarius LAA1] Length = 125 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +D +R L + L + GYEV +NG SA V E L+L D+ +P MD Sbjct: 1 MAHKVLVVDDQFGIRVLLHEVLQREGYEVFQASNGPSALSIVEREQPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R +L D KV+ +T + + L ++ +KPF + +L V L Sbjct: 61 GLEILRNLRKLGVDAKVIMMTAYGELDLIHEAMEMGAVAHFTKPFDIDELRRTVREHL 118 >gi|53803075|ref|YP_115242.1| nitrogen regulation protein NtrX [Methylococcus capsulatus str. Bath] gi|53756836|gb|AAU91127.1| putative nitrogen regulation protein NtrX [Methylococcus capsulatus str. Bath] Length = 455 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ IL+ +D+ D+R + L GY VV+ +NGA+A V+E L+L DI MP+ Sbjct: 1 MNQGCILVVDDEPDIRGLVRDILTDEGYTVVAADNGAAARQAVQEHRPDLVLLDIWMPDE 60 Query: 60 DGIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI L R E D V+ ++G A V ++ VL KP + L+ V R L Sbjct: 61 DGISLLREWLESGAIDCPVIMMSGHATVETAIEATRLGAHDVLEKPISMAKLLITVERAL 120 >gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4] gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4] Length = 231 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +D+ +MR + L K GY +V NG A +++ F L++ D++MPEMD Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + + L ++ +T L+KPF +L+ VN LL Sbjct: 61 GWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALL 118 >gi|320353817|ref|YP_004195156.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122319|gb|ADW17865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1002 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + ILL ED+ + L + GY V+ + A A D R LLLTD++MPEM+ Sbjct: 882 ETILLVEDEYAILELAAYILEQRGYTVLMTRSPAEAVDLARRHQGAIHLLLTDLIMPEMN 941 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LAR ++ P ++V++++G+ A + + L KPF L +V +L Sbjct: 942 GRDLARTVRDILPAVRVLYMSGYTADIIAHHGGMERLGHFLEKPFTASQLTRKVREVL 999 >gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733] gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733] Length = 218 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + L++ L K GY V S G A D + ++ F L+L DI++PE+DG E Sbjct: 2 KILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLVLLDIMLPEIDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A + DL V+F+T ++ ++KPF L +L+ V +L Sbjct: 62 VF--AYMWEYDLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVL 114 >gi|171778282|ref|ZP_02919488.1| hypothetical protein STRINF_00330 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282982|gb|EDT48406.1| hypothetical protein STRINF_00330 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 226 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ M R L AL GYEV S +G +A DK +E + +++ DI+MP GI+ Sbjct: 2 KVLIAEDEVQMNRVLTTALKHEGYEVDSVFDGQAAVDKAKENAYDVMVMDIMMPRKTGIQ 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + ++ +T A + D+ A L+KPF L++L+ Sbjct: 62 AVQEIRQTGNQSHIIMLTAMAEIDDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|153001454|ref|YP_001367135.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella baltica OS185] gi|217972614|ref|YP_002357365.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella baltica OS223] gi|151366072|gb|ABS09072.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS185] gi|217497749|gb|ACK45942.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS223] Length = 447 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE + +G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYECIDVASGEDAILALKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + D+ L+KPF L+N+V+R L +K Sbjct: 65 LLNFLQQHHPKLPVLLMTAYATIGSAVDAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|317176842|dbj|BAJ54631.1| putative transcriptional regulator [Helicobacter pylori F16] Length = 213 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVEHFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|311068155|ref|YP_003973078.1| hypothetical protein BATR1942_05965 [Bacillus atrophaeus 1942] gi|310868672|gb|ADP32147.1| hypothetical protein BATR1942_05965 [Bacillus atrophaeus 1942] Length = 120 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G++VV+ +GA A +K +E L+ DI MPEM Sbjct: 1 MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEAQDGAQAVEKFKEHSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++DP K++ + ++ D+ + KPF ++ +N+ L+ Sbjct: 61 DGITALKEIKQIDPQAKIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS 120 >gi|226313056|ref|YP_002772950.1| chemotaxis response protein [Brevibacillus brevis NBRC 100599] gi|226096004|dbj|BAH44446.1| chemotaxis response protein [Brevibacillus brevis NBRC 100599] Length = 120 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ K+L+ +D MR + + L K GY VV ++GA A +K +E L+ DI MPEM Sbjct: 1 MSNKVLIVDDAAFMRMMIKEILSKNGYSVVGEASDGAQAVEKYKELGPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + +LDP+ +V+ + A+ D+ + KPF ++ + + ++ Sbjct: 61 DGISALKEIKKLDPNARVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVLEAIKKTMS 120 >gi|218531281|ref|YP_002422097.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523584|gb|ACK84169.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 942 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED++ + RF + L + G+E N +A + E P ++ + +D+VMP M+G+ Sbjct: 825 VLVVEDNEQVGRFSTQLLSELGFETTWAANAEAALRLLEEHPERYAAVFSDVVMPGMNGV 884 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 EL + + PD+ V+ +G++ V S+ ++L KP+ + DL Sbjct: 885 ELGKEIRKRQPDMPVVLTSGYSHVLAQEGSHG---FELLHKPYAIEDL 929 >gi|120434874|ref|YP_860560.1| two-component response transcriptional regulator [Gramella forsetii KT0803] gi|117577024|emb|CAL65493.1| two-component system response regulator containing sigma-54 interaction domain [Gramella forsetii KT0803] Length = 388 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KILL ED+ +RR L K L + YEV +G + V+ E F L+L DI MP+MDG Sbjct: 3 KILLIEDEASIRRVLNKILTEESKNYEVTDAEDGLQGMELVKNEDFDLILCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ ++ P++ V+ I+G + ++ +SKP L L+N V L Sbjct: 63 VEVLEAVKKIKPEIPVVMISGHGDLDTAVNTMKIGAFDYISKPPDLNRLLNTVRNAL 119 >gi|94969809|ref|YP_591857.1| two component, sigma54 specific, Fis family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551859|gb|ABF41783.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Koribacter versatilis Ellin345] Length = 463 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + + +AL GYE+ +G A + + E + L D+V+P +D Sbjct: 1 MAYSILICDDEALTLKTISRALEAEGYEIFLAQSGEQAVEIAQREHPDIALLDVVLPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+E+ R+ LD + V+ ++ + V ++ L+KPFH+ D+VN + R Sbjct: 61 GVEVLRQLKRLDSSIVVVMMSAYRVVERAVEALKLGAYDYLTKPFHVSDMVNTIGR 116 >gi|126175130|ref|YP_001051279.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella baltica OS155] gi|125998335|gb|ABN62410.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS155] Length = 447 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE + +G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYECIDVASGEDAILALKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + D+ L+KPF L+N+V+R L +K Sbjct: 65 LLNFLQQHHPKLPVLLMTAYATIGSAVDAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|197118335|ref|YP_002138762.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197087695|gb|ACH38966.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 692 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + IL+AEDD + + L + GY ++ NG A K +E + +L+L DI+MP M+G Sbjct: 563 ETILVAEDDLYVLDLVTNVLVQYGYSIIHAANGEEAVQKFQENDQIALVLMDIIMPVMNG 622 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E A + L P+ +++F +G+ A + ++A+++ KP L+ +V +L Sbjct: 623 KEAAEKIRRLRPEARILFTSGYTAEIIKSRCELEESAELIMKPVKPALLLKKVREML 679 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++IL+ EDD+ + + +A Y + + A +V+ F ++LTD ++P+ Sbjct: 8 KRILIVEDDESHAELIRRGFSEASDHYRLTVATSMQEALARVQSNNFDIVLTDYLLPDGK 67 Query: 61 GIELARRATELDP 73 G++L ++ + P Sbjct: 68 GVDLVLKSGQTTP 80 >gi|86157260|ref|YP_464045.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773771|gb|ABC80608.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 466 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++L+ +DD +R L + L G EV +G +A +K+ +PF L+LTD+ MP +DG Sbjct: 10 GARVLVVDDDPGVRYTLREILASEGLEVEEAADGEAALEKLGAQPFPLVLTDLRMPRLDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + L RR T P +V+ IT + ++ KPF +L+ V R Sbjct: 70 MALLRRITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRR 124 >gi|158521531|ref|YP_001529401.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510357|gb|ABW67324.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 777 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ ILL ED+ + L GY V++ + A RE LL+TD+VMPEM Sbjct: 647 HETILLVEDEALLLDMTATMLRLQGYTVLAASTPGEAMRLAREHAGDIHLLMTDVVMPEM 706 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA RA L P ++++F++G+ A + L KPF ++L V L Sbjct: 707 NGRDLATRALSLRPGIRLLFMSGYTANVIAHHGVLDDGVHFLQKPFSAKELAARVREAL 765 >gi|160876179|ref|YP_001555495.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella baltica OS195] gi|160861701|gb|ABX50235.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS195] gi|315268375|gb|ADT95228.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS678] Length = 447 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE + +G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYECIDVASGEDAILALKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + D+ L+KPF L+N+V+R L +K Sbjct: 65 LLNFLQQHHPKLPVLLMTAYATIGSAVDAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|15616349|ref|NP_244654.1| two-component response regulator [Bacillus halodurans C-125] gi|10176412|dbj|BAB07506.1| two-component response regulator [Bacillus halodurans C-125] Length = 120 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 60/107 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D +R L + L K GY++ NG A V EE L+L D+ +P MDG+E Sbjct: 3 KILVVDDQYGIRVLLNEILQKDGYQMFQAANGIQALAIVEEETPDLVLLDMKIPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RR +++P+++V+ +T + + + ++ +KPF + D+ Sbjct: 63 ILRRIKDMNPNIEVIMMTAYGELNMINEAMQLGAVTHFAKPFDIDDV 109 >gi|253699193|ref|YP_003020382.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774043|gb|ACT16624.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 540 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 ILL +D++++R + L G++V++ +NG+ A + R+ L+L D+ MPE+DG+ Sbjct: 412 ILLVDDEEELRAVGCELLTSMGFKVIAASNGSEALAIWQERKSEIDLVLMDLTMPELDGV 471 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E R E L V+F +G+ + P +A +SKP+ L L Sbjct: 472 ETYRALREDTSTLPVLFCSGYGDQDIRPCIGEDVHAGFISKPYQLNHL 519 >gi|157144822|ref|YP_001452141.1| acetoacetate metabolism regulatory protein AtoC [Citrobacter koseri ATCC BAA-895] gi|157082027|gb|ABV11705.1| hypothetical protein CKO_00549 [Citrobacter koseri ATCC BAA-895] Length = 461 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E +NG +A + P ++L DI MPEM+GIE Sbjct: 6 RILIVDDEDNVRRMLATAFSLQGHETQCASNGQTALQHFADAPPDVVLMDIRMPEMNGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P + ++ +T +A V ++ + KPF L +L + R L ++ Sbjct: 66 ALKVMRAQHPRVPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123 >gi|251799545|ref|YP_003014276.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547171|gb|ACT04190.1| two component transcriptional regulator, AraC family [Paenibacillus sp. JDR-2] Length = 513 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 11/87 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKA------GYEVV-SCNNGASAYDKVREEPFSLLLTDIVM 56 K+LL +D+ F+ + L A G EVV S +G A +++RE P LL+TDI M Sbjct: 3 KVLLVDDEP----FITEGLSDAVDWSAFGLEVVGSAEDGEEALERLRELPVDLLITDISM 58 Query: 57 PEMDGIELARRATELDPDLKVMFITGF 83 P M G+EL R+A EL P LKV+ ++GF Sbjct: 59 PIMTGLELIRKARELQPQLKVIILSGF 85 >gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8] gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8] Length = 224 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD +RR + AL + GY+ + N+G A D + + L+++DI+MP MDG E Sbjct: 3 QILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTNIDLIISDIMMPNMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ D + ++ +T + + + KP + +++ V LL Sbjct: 63 LTRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALL 117 >gi|188577558|ref|YP_001914487.1| histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522010|gb|ACD59955.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 507 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY ++S ++G A + + + P L TD++MP M Sbjct: 382 NETILVVEDKQDVAVVARMFLENAGYRILSASSGREAVEVLGKNPEVDALFTDLIMPGGM 441 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V++KP+ ++L+ + LL Sbjct: 442 NGVMLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 500 >gi|84624645|ref|YP_452017.1| histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368585|dbj|BAE69743.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 540 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY ++S ++G A + + + P L TD++MP M Sbjct: 415 NETILVVEDKQDVAVVARMFLENAGYRILSASSGREAVEVLGKNPEVDALFTDLIMPGGM 474 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V++KP+ ++L+ + LL Sbjct: 475 NGVMLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 533 >gi|38505826|ref|NP_942444.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] gi|38423850|dbj|BAD02058.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] Length = 862 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MD 60 + IL+ EDDD + R L L GY V + G +A + ++ LLLTDI+MP M+ Sbjct: 735 EHILVVEDDDLVLRHLEGQLRSLGYRVTAVTCGPNAIEALKAHSDIDLLLTDIIMPGGMN 794 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA A LKV+F +G+ A+ +LSKP++ +L +V R+L Sbjct: 795 GRELADLAKATYSKLKVLFTSGYTENAIIHHGRLDPGVDLLSKPYNRLELATKVRRVL 852 >gi|309798826|ref|ZP_07693089.1| response regulator SaeR [Streptococcus infantis SK1302] gi|308117552|gb|EFO54965.1| response regulator SaeR [Streptococcus infantis SK1302] Length = 205 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V ++G A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVFVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L PD +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|308535166|ref|YP_002137294.2| GAF domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|308052511|gb|ACH37498.2| LOW QUALITY PROTEIN: sensor histidine kinase response regulator, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 837 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMD 60 + IL+AED ++RR + L + GY V+ +G A +K ++ L++ D+VMP M+ Sbjct: 706 ETILVAEDALEVRRVTTELLQQHGYRVIEAADGREALEKFLAHQDQIKLVIMDLVMPRMN 765 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + + +PDLKV+F + + ++ L+KP R L+ V RLL Sbjct: 766 GRDAFDAIAKCNPDLKVLFTSAYPPEEVDAGRAVLPEGSFLAKPCQPRPLLLAVRRLL 823 >gi|226315075|ref|YP_002774971.1| sporulation initiation phosphotransferase F [Brevibacillus brevis NBRC 100599] gi|226098025|dbj|BAH46467.1| sporulation initiation phosphotransferase F [Brevibacillus brevis NBRC 100599] Length = 124 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 65/117 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++K+L+ +D +R L + LGK GY+ NG A + V +E L++ D+ +P MDG Sbjct: 6 DKKVLVVDDQYGIRILLYEVLGKEGYKTFQAANGKMALEIVEKESPDLVILDMKIPGMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+ + +++ ++KV+ +T + + + ++ +KPF + +L V++ L Sbjct: 66 IEILKHIKKINQEIKVIMMTAYGELDMIKEATQLGALTHFTKPFDIDELRMAVHQQL 122 >gi|13470935|ref|NP_102504.1| sensor kinase [Mesorhizobium loti MAFF303099] gi|14021678|dbj|BAB48290.1| sensor kinase [Mesorhizobium loti MAFF303099] Length = 898 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 + +LL ED+D +R ++AL GY V ++G A + + ++++D+VMPEM Sbjct: 778 SATVLLVEDEDAVRMGGMRALTSRGYTVHEASSGVEALEVFEALGGKVDIVVSDVVMPEM 837 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG L + PD+K +F++G+A A + A + L KPF L+ L V +L Sbjct: 838 DGPTLLGELRKRQPDIKFVFVSGYAEDAFARNLPADAHFGFLPKPFSLKQLATIVKDML 896 >gi|325280518|ref|YP_004253060.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] gi|324312327|gb|ADY32880.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] Length = 229 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 46/82 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKILL EDD L L + YEV C NG + R++ F + L D++MPEMD Sbjct: 1 MAQKILLVEDDPCFGSVLKSYLELSDYEVTLCVNGNDGLEAFRKDKFDICLLDVMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G L ++ E+D ++ ++IT Sbjct: 61 GFTLGKKIREIDGNVPFVYITA 82 >gi|328953463|ref|YP_004370797.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] gi|328453787|gb|AEB09616.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] Length = 141 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFL-IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ KILL +D+ DM L + K ++V + NN + + + F L++TD+ MP M Sbjct: 1 MSAKILLVDDEPDMLDMLEMIITDKTPHQVTTTNNPLELTELLTRDTFDLVITDLKMPSM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGIE+ + + DPD V+ IT F + ++ ++KPF ++ ++R L Sbjct: 61 DGIEVIKAVKQHDPDTPVVMITAFGTIESAEEAVRQGAYDFITKPFRKEQILVAISRAL 119 >gi|115379573|ref|ZP_01466662.1| two component, sigma54 specific, transcriptional regulator, Fis family [Stigmatella aurantiaca DW4/3-1] gi|115363431|gb|EAU62577.1| two component, sigma54 specific, transcriptional regulator, Fis family [Stigmatella aurantiaca DW4/3-1] Length = 457 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ +D +M R L + L GYEV GA A VR PF +L+D+ M E+DG Sbjct: 4 QARILVVDDHLEMGRMLQEPLSDEGYEVELATRGAEAIRLVRSRPFDAVLSDLRMEEVDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ +DP++ V+ +T F V ++ +KPF L +++ + R L Sbjct: 64 FDVLAAVQAVDPEVPVLLMTAFGGVENAVEAMKRGAWHYFTKPFRLDEVLIYLRRAL 120 >gi|212697044|ref|ZP_03305172.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM 7454] gi|212675819|gb|EEB35426.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM 7454] Length = 224 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + K+L K+GYEV S +G A + + E + L++ D+ +P MDG+E Sbjct: 2 KILIVEDEQILNDTINKSLKKSGYEVESAFDGIDAMEMIEIESYDLIILDLNLPHMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + D + KV+ ++ + + + L KPFHL +L V R LT +N Sbjct: 62 ILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARV-RSLTRRN 119 >gi|148555601|ref|YP_001263183.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148500791|gb|ABQ69045.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 624 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 43/70 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ RR + L + G++VV+ +G A V +PF L+L D+ MPE+DGIE Sbjct: 366 RILLAEDNPINRRLMAGLLAREGHDVVAVEDGRKALGAVATQPFDLVLMDMQMPELDGIE 425 Query: 64 LARRATELDP 73 R LDP Sbjct: 426 ATRAIRALDP 435 >gi|219849406|ref|YP_002463839.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543665|gb|ACL25403.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 794 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 8/115 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD+ R L L +AG+ V C A A + PF ++L+D+VMPE+DGI Sbjct: 664 RILVIDDDEAAARTLSNLLEQAGHHVTYCARSAEAIEIYNANPFDIVLSDVVMPELDGIS 723 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEV 114 L DP ++ TG + PD A VL KPF +L+ V Sbjct: 724 LLNVLRTYDPTATIILFTG----QVEPDQVAAMAASGAYAVLRKPFAADELMATV 774 >gi|108760778|ref|YP_631171.1| response regulator [Myxococcus xanthus DK 1622] gi|108464658|gb|ABF89843.1| response regulator [Myxococcus xanthus DK 1622] Length = 125 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD D+ L + L G+E+ NG A D++ EP +L+L D++MP MDG E Sbjct: 2 VLVVDDDPDILEALSEILEAEGFEIRRARNGKEALDRLEPEPPNLILLDLMMPVMDGWEF 61 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRDLVNEVNRLL 118 A+R + P+ + + L+ D N A L+KPF L DL++ V R L Sbjct: 62 AQRMRQKPPE-----VARIPLIVLSADRNVGSKAADIGAVGHLAKPFELNDLLDMVRRSL 116 >gi|319404182|emb|CBI77775.1| Sensor protein [Bartonella rochalimae ATCC BAA-1498] Length = 850 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED+ +R ++AL GY V+ +G A + + ++++D+VMPEMDG Sbjct: 733 VLLVEDEYSVRMSSVRALQMRGYTVLEAASGVEALAILEKNKGAVDIIVSDVVMPEMDGP 792 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 L A + PD+K++F++G+ A N P++ LSKPF L+ L V L Sbjct: 793 TLLIEARKNYPDIKIIFVSGYTKDAFT--KNLPEDTVFGFLSKPFTLKQLALAVKETL 848 >gi|296138775|ref|YP_003646018.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026909|gb|ADG77679.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 230 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LLAEDD+ + L +AL + GY+V G A + +E F+LL+ D+ +PE+D Sbjct: 1 MTTRVLLAEDDEAIASPLARALTREGYDVTVAATGTDAVRRALDEEFALLILDLGLPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ R P++ V+ +T V L+ ++ + KPF + +L+ Sbjct: 61 GLEVCREVRAARPEVAVLMLTARTDEMDFVVGLDAGAD-----DYVGKPFRMFELMARTR 115 Query: 116 RLL 118 LL Sbjct: 116 ALL 118 >gi|254562230|ref|YP_003069325.1| two-component DctB-like sigma-54 specific transcriptional regulator [Methylobacterium extorquens DM4] gi|254269508|emb|CAX25474.1| two-component DctB-like sigma-54 specific transcriptional regulator, Fis subfamily; with N-terminal response regulator receiver and ATPase domains [Methylobacterium extorquens DM4] Length = 450 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++I+ +D+DD+RR ++L G++V + G A +R +P +++TD+ +P +DG Sbjct: 9 SERIVFIDDEDDVRRANRQSLELDGFQVETFEAGEPALAAIRAKPPGVVVTDVRLPGLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R DPDL V+ ITG +++ + L+KP+ L+ V R L Sbjct: 69 RALLERIQAEDPDLPVILITGHGDISMAVAAMRSGAYDFLAKPYPAEALMGSVRRAL 125 >gi|170748586|ref|YP_001754846.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Methylobacterium radiotolerans JCM 2831] gi|170655108|gb|ACB24163.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylobacterium radiotolerans JCM 2831] Length = 488 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 65/118 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N I++A+DD +R L +AL +AGYEV S N A+ + V + L++TD+VMP+ + Sbjct: 3 NGHIIVADDDAAIRTVLNQALSRAGYEVRSTGNCATLWRWVAQGEGDLVITDVVMPDENV 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + P+L ++ ++ ++ + L KPF L++L+ V R L+ Sbjct: 63 FDLLPRIKRVRPELPIIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELIAIVGRALS 120 >gi|197122988|ref|YP_002134939.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196172837|gb|ACG73810.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 449 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R L++ L G++V + + A+A + E +LTD+ MP +DGI+ Sbjct: 3 RVLVVDDDPVAQRVLVRLL-SPGHQVRAFGDPAAALRHLAEHGADAVLTDLRMPGLDGIQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RA ELDP++ V ITG ++++ ++ L+KPF D+V ++R L Sbjct: 62 VLARARELDPEVLVFVITGHSSLSGAVEAIKRGAEDYLAKPFEPEDVVLRLDRAL 116 >gi|313497794|gb|ADR59160.1| Two component, sigma54 specific, Fis family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 451 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R+ L L G+ + + A + V E+ FSL+++D+ MP MD Sbjct: 1 MAIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L + P L V+ +T AAV ++ A L KPF + L++ V R Sbjct: 61 GHQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLSLVER 116 >gi|302392130|ref|YP_003827950.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] gi|302204207|gb|ADL12885.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] Length = 235 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 4/116 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ ++R+ L + L + YEVV+ NG DK E+ F+++L D+ +P +DG Sbjct: 3 QEKILIVDDEKNIRKTLKQCL-QTDYEVVTAVNGEDGIDKFAEDDFAVILLDMKLPGIDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 I++ + D V+ ITGF +V + L KPF +R +V EV Sbjct: 62 IKVLEEIKKEDNGANVIMITGFGSVKTAVKTMKLGAVDYLRKPFTPDEIRKIVQEV 117 >gi|255654555|ref|ZP_05399964.1| chemotaxis protein [Clostridium difficile QCD-23m63] gi|296449327|ref|ZP_06891109.1| chemotaxis response regulator CheY [Clostridium difficile NAP08] gi|296880741|ref|ZP_06904692.1| chemotaxis response regulator CheY [Clostridium difficile NAP07] gi|296261797|gb|EFH08610.1| chemotaxis response regulator CheY [Clostridium difficile NAP08] gi|296428274|gb|EFH14170.1| chemotaxis response regulator CheY [Clostridium difficile NAP07] Length = 120 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M KIL+ +D MR + +ALGK+GY +V N+G A + + E L+L DI MP+ Sbjct: 1 MGNKILIVDDAIFMRMIIKEALGKSGYNNLVEANDGEEACNIFKYEKPDLMLLDITMPKK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E+ R +LD KV+ + + D+ + KPF LV VN L Sbjct: 61 DGLEVLREIKKLDSSAKVVMCSAIGQENMIVDAIKLGALDFIVKPFKTETLVKVVNNAL 119 >gi|52080236|ref|YP_079027.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52785613|ref|YP_091442.1| hypothetical protein BLi01854 [Bacillus licheniformis ATCC 14580] gi|319645985|ref|ZP_08000215.1| chemotaxis protein cheY [Bacillus sp. BT1B_CT2] gi|52003447|gb|AAU23389.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52348115|gb|AAU40749.1| CheY [Bacillus licheniformis ATCC 14580] gi|317391735|gb|EFV72532.1| chemotaxis protein cheY [Bacillus sp. BT1B_CT2] Length = 120 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M KIL+ +D MR + L K G+EVV+ +GA A +K +E L+ DI MPE Sbjct: 1 MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + E+DP K++ + ++ D+ + KPF ++ +N+ L+ Sbjct: 61 DGITALKEIKEIDPQAKIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS 120 >gi|150390471|ref|YP_001320520.1| response regulator receiver protein [Alkaliphilus metalliredigens QYMF] gi|149950333|gb|ABR48861.1| response regulator receiver protein [Alkaliphilus metalliredigens QYMF] Length = 120 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ ++L+ +D MR + L K GYEVV NG A +K +E +L + DI MPEM Sbjct: 1 MSNRVLIVDDAAFMRMMVKDVLTKNGYEVVGEAENGLKAVEKFKELDPTLTIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ + ++DP+ KV+ + ++ ++ + KPF ++ V + + Sbjct: 61 DGIQAVKEIKKIDPNAKVIMCSAMGQQSMVIEAIQAGAKDFIVKPFQADRVIQAVKKAI 119 >gi|152993008|ref|YP_001358729.1| two-component response regulator [Sulfurovum sp. NBC37-1] gi|151424869|dbj|BAF72372.1| two-component response regulator [Sulfurovum sp. NBC37-1] Length = 236 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD D+ L + LG+ G EV S ++ + +K++ E + L+L D+ +PEMDG++ Sbjct: 15 KVLMVEDDPDITELLEEYLGRYGIEVFSVSSPSVGLEKLQLERYDLMLIDLGLPEMDGLD 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R E P+L ++ T V+ + ++KP+ R+LV + L+ Sbjct: 75 LCRIVKERYPELPIIVSTARIDVSDKVAAFEIGADDYVAKPYEPRELVARIQVLV 129 >gi|90424077|ref|YP_532447.1| nitrogen metabolism transcriptional regulator NtrC [Rhodopseudomonas palustris BisB18] gi|90106091|gb|ABD88128.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Rhodopseudomonas palustris BisB18] Length = 480 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 63/115 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + + Sbjct: 5 SILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R ++ P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 65 LLPRIKKMRPNLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELIAIVGRAL 119 >gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472] gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC 12472] Length = 738 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE----PFSLLLTDIVMPEM 59 ++L+ +D+ L L + G+EV C NG A KVR++ PF + D +MPEM Sbjct: 261 RVLVVDDNQSAVDVLCAQLKQLGFEVQGCLNGHEALSKVRQDCLQKPFDVAFVDWMMPEM 320 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 DG+E RR ++ ++++ +T F + + A + KP +L L + Sbjct: 321 DGLEAVRRMRQVSRKMRIVMVTAFGRDEIRVKARAAGCDAFMVKPVNLSQLYD 373 Score = 37.7 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEMDG 61 +LL ED+ ++ I+ L G + NG +A DK+ + F +L D+ MP MDG Sbjct: 404 LLLVEDNRINQQIAIELLEGTGATITVAANGQAALDKLLAYGPKAFDAVLMDVQMPVMDG 463 Query: 62 IELARR 67 IE R Sbjct: 464 IEATGR 469 >gi|95931004|ref|ZP_01313732.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132900|gb|EAT14571.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 454 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 58/109 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D+ +R L ++L K GY V + +G A D VR + L+ DI +P +DG Sbjct: 3 NYRVLVVDDEHLIRWSLEQSLKKQGYHVQTVGSGEEALDYVRSDSPDLVFLDIQLPGIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 IE + E+D D+ V+ IT + + ++KPF+L +L Sbjct: 63 IETLEKIKEIDSDISVIMITALGVLETAVKAMQLGAYDYINKPFNLDEL 111 >gi|302038857|ref|YP_003799179.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606921|emb|CBK43254.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 1033 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY--DKVREEPFSLLLTDIVMPEMD 60 + +LL ED+ +RR + + L GY V+ +G A P LLLTD+VMP+M Sbjct: 910 ETVLLVEDEPGVRRLVNETLRLHGYTVLEARHGIEALLTGAKHAGPIHLLLTDVVMPQMS 969 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A + + P++KV++++G+ L KPF L +V +L Sbjct: 970 GPEVAEKLATVRPEVKVLYMSGYPDHPAFSKGGIDTEHSFLQKPFTPTTLAQKVREVL 1027 >gi|300311805|ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074590|gb|ADJ63989.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1278 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD +++ +I L GY V+ +NG A + ++ L+ TD+VMP + Sbjct: 973 DETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSV 1032 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELA++A L PD++++F +G+ + + ++LSKP+ + L + ++L+ Sbjct: 1033 PVTELAQQARLLVPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIRQMLS 1092 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D ++ + + L G++ +G A + E+ F +L TD+ +P M G+E Sbjct: 1165 RLLVVEDNIDSQQLVCELLETLGHQARGVISGEEALQALEEQGFDVLFTDVNLPGMSGVE 1224 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 LA+ A PDL V+F +G+ + N A L KP+ + L ++++ Sbjct: 1225 LAKAALGRFPDLAVIFASGYGTMVAR---NVGFAAHALPKPYDIDQLQEILDKI 1275 >gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6] gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6] Length = 232 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L L P+ +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLIGEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|261838905|gb|ACX98670.1| putative transcriptional regulator [Helicobacter pylori 52] gi|317179832|dbj|BAJ57618.1| putative transcriptional regulator [Helicobacter pylori F32] gi|332672829|gb|AEE69646.1| response regulator [Helicobacter pylori 83] Length = 213 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656] gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656] Length = 257 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 62/114 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MDG+E Sbjct: 33 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 92 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + + + + KV+ ++ +A + + KPFHL++L + L Sbjct: 93 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 146 >gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata HTCC2501] gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata HTCC2501] Length = 229 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +ILL ED+ + F+ + L ++GY V C +G + +++ F L++ DIV+P MD Sbjct: 1 MGNRILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEMLQDGDFDLVILDIVLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+AR DL ++ +T + V DS A L KPF ++L V L Sbjct: 61 GREVARTIRGQGLDLPILMLTALGSTENVVRGLDSGAD---DYLVKPFKFKELEARVRAL 117 >gi|317178344|dbj|BAJ56132.1| putative transcriptional regulator [Helicobacter pylori F30] Length = 213 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|302037393|ref|YP_003797715.1| hypothetical protein NIDE2070 [Candidatus Nitrospira defluvii] gi|300605457|emb|CBK41790.1| protein of unknown function, putative Response regulator with PAS domain S-box [Candidatus Nitrospira defluvii] Length = 514 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD D+ L L GY V G A K + E S ++ D+++P+MDG+ Sbjct: 8 QILIVDDDPDIALVLHDLLEHVGYRVSVAGTGGEALAKAKAESLSAVVLDLMLPDMDGLS 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + ++DP L V+ +T F VA S L+KP+ +L + R + +K+ Sbjct: 68 VLTLLKQIDPVLPVIMLTAFVEVAKKHSSLTEGAFGYLTKPYDAEELKALIRRAVGVKH 126 >gi|148255457|ref|YP_001240042.1| nitrogen metabolism transcriptional regulator NtrC [Bradyrhizobium sp. BTAi1] gi|146407630|gb|ABQ36136.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Bradyrhizobium sp. BTAi1] Length = 480 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKMRPNLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELIAIVGRAL 119 >gi|308062648|gb|ADO04536.1| putative transcriptional regulator [Helicobacter pylori Cuz20] Length = 213 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCTFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 1/113 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD ++ L LG+AGY V G K+RE+P L++ D+ +P++DG Sbjct: 14 KRILIIEDDPEIASLLQAELGEAGYRVDWAPGGMQGLVKLREDPPHLIVLDLGLPDLDGS 73 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ARRA + D+ ++ +T AV L+KPFH +L+ + Sbjct: 74 EIARRAKQHG-DVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQ 125 >gi|224367832|ref|YP_002601995.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223690548|gb|ACN13831.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 126 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 61/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI+L +D+D + + L AL K G V + +G A + E PF +++TDI M +MDGIE Sbjct: 7 KIMLIDDEDIVGKRLKPALEKTGDLVETFQDGEQALARFNEMPFDIVVTDIRMEKMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + + KV+ ITG+A V + ++ + ++KPF DL + R Sbjct: 67 ILEKVLARSSTTKVIIITGYATVEIAREALSKGAFDFIAKPFKPVDLREIIKR 119 >gi|317181325|dbj|BAJ59109.1| putative transcriptional regulator [Helicobacter pylori F57] Length = 213 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|253700058|ref|YP_003021247.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774908|gb|ACT17489.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 810 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 6/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 K+L+ +D+D++R + L G+ +S NG A + R P F++L D+ MP+MD Sbjct: 689 KVLVVDDEDEVRNIGCEMLESLGFTPLSAANGREALEVFRNAPDIDFAIL--DLTMPQMD 746 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + R +LDP+L+++ +G++ + P A + KPF L L + LL + Sbjct: 747 GEQCFRELRQLDPELQIVMASGYSEYEVAPKFIGMGLAGFVEKPFKLATLKKAIGELL-L 805 Query: 121 KN 122 KN Sbjct: 806 KN 807 >gi|330950725|gb|EGH50985.1| PAS protein [Pseudomonas syringae Cit 7] Length = 358 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L GY V+ GA A ++ + LL+TD+ +P M Sbjct: 237 DETILVVDDEPAVRLLIAELLEDLGYIVLQAERGADALTILQSKAAIDLLITDVGLPGGM 296 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLK++F+TG+A AL D+ P VL KPF + +L+ V LL Sbjct: 297 NGRQVADAARDVRPDLKILFVTGYAENAALAHDTLEP-GMHVLPKPFAIAELIGRVTELL 355 >gi|116749722|ref|YP_846409.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698786|gb|ABK17974.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 462 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +DD +R + L AGY V G A +EE +S + D+ M EMDG Sbjct: 3 GEKILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L + + P L V+ +T + +A ++ ++KPF +DL+ + + L + Sbjct: 63 MVLLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALEVG 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|116255509|ref|YP_771342.1| putative two component sensor kinase/response regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260157|emb|CAK03260.1| putative two component sensor kinase/response regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 861 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 + IL+AEDD+ +R +++ L GY V+ + SA + LL TD+VMP + Sbjct: 598 ETILVAEDDEGVRATVVEMLSDLGYYVLKAKDAQSALTVIESGAHIDLLFTDVVMPGPLR 657 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELAR A E PD+ V++ +G+ ++ ++LSKP+ +L ++ +LT+ Sbjct: 658 SPELARMARERLPDIAVLYTSGYTENSIVHGGRLDPGLELLSKPYTREELARKIRHVLTL 717 Query: 121 K 121 + Sbjct: 718 R 718 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R + L GY+V+ ++G + + +++TD+ +P M G Sbjct: 744 KLLLVEDDAFIRLDTAEILQDLGYDVIEADSGERGVEIIGHTTIDIIVTDVGLPGMSGPA 803 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 A +A E P + ++F TG +++ PD+N + +LSKPF Sbjct: 804 FAAKAREAFPSVGLVFATGNSSL---PDANHLPGSVLLSKPF 842 >gi|77919556|ref|YP_357371.1| response regulator transcription factor [Pelobacter carbinolicus DSM 2380] gi|77545639|gb|ABA89201.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter carbinolicus DSM 2380] Length = 471 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ R + LG AGY+V + G A + + + PF ++LTD+ +P + GIE Sbjct: 17 QILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPGVSGIE 76 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R E P V+ ITG + ++ ++KP H L Sbjct: 77 ILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKL 123 >gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] Length = 1346 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++LLAEDD R + L K G+EV + ++GA A VR++ + +L D+ MPE+DG Sbjct: 1207 SRRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAYDAILMDVQMPELDG 1266 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 +E RR P + ++ A D A + LSKP +L ++ Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEALD 1323 >gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 220 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 15/118 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+AED+ D+R L + L +GY V S NG A + F L++ DI+MP +DG E Sbjct: 3 HILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDGFE 62 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 +A+ R T P ++F+T AL + N K + ++KPF LR L+ + Sbjct: 63 VAQQVRKTSQTP---IIFLT-----ALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRI 112 >gi|317495700|ref|ZP_07954065.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914153|gb|EFV35634.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 229 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ ++ + L + GY+V N+G A +K ++ +SL++TDI+MP MD Sbjct: 1 MVNKILLVDDEIEITEINKRYLEQDGYDVDIANDGKEALEKYKKNKYSLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L LD + +FIT A++L D + KPF R+LV Sbjct: 61 GYDLISEVQYLDEEQPFLFITAKTTEPDKIYALSLGADD-------YIVKPFSPRELVLR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKNIL 118 >gi|308273268|emb|CBX29871.1| hypothetical protein N47_F15660 [uncultured Desulfobacterium sp.] Length = 665 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + +L+ ED+ + + L GY V++ A + E L+LTD+VMPEM Sbjct: 544 GETVLVVEDEPALLTMIKIMLENIGYRVLAAGMPGKAIELAEEHAGEIRLILTDVVMPEM 603 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +G++LA R L P +K++F++G+ A + + KPF ++DL +V Sbjct: 604 NGLDLAERMQSLYPGMKILFMSGYTANVIVHHGLLDAGVNFIQKPFSMKDLAIKV 658 >gi|303248917|ref|ZP_07335165.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] gi|302489716|gb|EFL49651.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] Length = 126 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++ +D+ + L L K G V + + A A ++ E PF L++TD M MDG+E Sbjct: 7 RIMIIDDEKVVGDMLRIHLTKHGCIVETFLSAAPALARLEETPFDLIVTDFKMKGMDGME 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + L PD++V+ IT FA + ++ + KPF ++DL+ + R L Sbjct: 67 LLKTVKSLYPDIQVIMITAFAHLDTAIEAFRGQVHDFFPKPFKIKDLIESIQRAL 121 >gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] Length = 1346 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++LLAEDD R + L K G+EV + ++GA A VR++ + +L D+ MPE+DG Sbjct: 1207 SRRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAYDAILMDVQMPELDG 1266 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 +E RR P + ++ A D A + LSKP +L ++ Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEALD 1323 >gi|209549555|ref|YP_002281472.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535311|gb|ACI55246.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 867 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL ED++ +RR + L GY V +G A + E ++++D+VMPEMDG Sbjct: 750 ILLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALSIMEELDGKVDIVVSDVVMPEMDGP 809 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + PD+K +F++G+A A N P +K L KPF L+ L V L Sbjct: 810 TLLRELRKTYPDMKFIFVSGYAEDAFA--RNLPPESKFGFLPKPFSLKQLAVVVKETL 865 >gi|90421890|ref|YP_530260.1| GAF sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90103904|gb|ABD85941.1| GAF sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 618 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EM 59 + IL+ EDDD +RR++I + GY ++ N A A + +P LL TD+ MP + Sbjct: 480 TETILVVEDDDLVRRYVIGQIESLGYATLTAANAAEALVVIDSAQPIDLLFTDMTMPGAL 539 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G +LA A P L V+F +GF ++ D + L+KP+ DL + LT Sbjct: 540 NGRQLAVEARRRRPALSVLFSSGFTEESVVHDGHIDAEMLFLAKPYRKADLARMIRVALT 599 >gi|308175031|ref|YP_003921736.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607895|emb|CBI44266.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328555000|gb|AEB25492.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328913356|gb|AEB64952.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 225 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 11/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED+D++ L K L G+ + S G A +++ P L + DI++P+ D Sbjct: 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEEARKQMQPSP-HLWILDIMLPDTD 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G L + E DPD+ V+FI+ A + L SN ++KPF R+L+ V Sbjct: 60 GYTLIKEIKEKDPDVPVIFISARDADIDRVLGLELGSN-----DYIAKPFLPRELIIRVQ 114 Query: 116 RLLTI 120 +LL + Sbjct: 115 KLLEL 119 >gi|302035921|ref|YP_003796243.1| hypothetical protein NIDE0542 [Candidatus Nitrospira defluvii] gi|300603985|emb|CBK40317.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 910 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ +DD D+R L LG GY V S +G A + ++ + L DI +P+++ Sbjct: 1 MRPPVLIVDDDPDIRESLTDMLGHEGYLVHSAASGTEALQQAKQTRYDAALLDIQLPDLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ + + ELD L V+ +TG S A L+KP++ ++L + R +++ Sbjct: 61 GLSVLKVLMELDASLPVIILTGNVTPENTIGSLAKGAFAYLTKPYNSQELKAILRRAVSV 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|222523792|ref|YP_002568262.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|222447671|gb|ACM51937.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 862 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ ++R + + L +AGY V++ +NG A + + P + L DI + +M G E+ Sbjct: 735 ILVIDDNPEVRALIERILVRAGYRVLAFHNGNDAIRAISDHPVACALIDITLADMHGYEV 794 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ + P + + ++G+A A N + P A L KPF +L+ V RLL Sbjct: 795 CRQIAAMHPHIPLALVSGYAVQAENL-VDVPVMA-TLQKPFRASELLALVRRLL 846 >gi|188580393|ref|YP_001923838.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179343891|gb|ACB79303.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 826 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +L+ ED+ D+ RF + L G+ +V +N +A + PF + +D+VMP M G+ Sbjct: 699 VLVVEDNLDVGRFCTQLLEDLGHSIVWAHNAEAALAEFERVPFRFDAVFSDVVMPGMGGV 758 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARR P+L V+ TG++ V D++ +++ KP+ + + +LT Sbjct: 759 ELARRLKADHPNLPVILTTGYSDVLAQDDAHG---FELVRKPYSAEQVARALRTVLT 812 >gi|154250102|ref|YP_001410927.1| response regulator receiver protein [Fervidobacterium nodosum Rt17-B1] gi|154154038|gb|ABS61270.1| response regulator receiver protein [Fervidobacterium nodosum Rt17-B1] Length = 118 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 52/84 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED+ +MR + + L AGY+V NG A K E+ + L+ DI MP M+ Sbjct: 1 MPKRILVVEDEPNMRLLVTEELTDAGYDVDEAANGEEALRKFTEKTYDLVTIDIEMPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+ELA + E+ D+K++ +T ++ Sbjct: 61 GLELAGKLREIKRDVKLVLLTAYS 84 >gi|158318846|ref|YP_001511354.1| multi-sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158114251|gb|ABW16448.1| multi-sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 782 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 ILLAEDDD +RR + L AGY VV +G +A R LL+TD+++P +G + Sbjct: 644 ILLAEDDDAVRRLAERVLRGAGYRVVCAADGRAARTLARRLTSVDLLVTDVILPGRNGRQ 703 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 LA T + P L V+F + ++ L D L KPF L V L + Sbjct: 704 LAEELTRMFPGLPVVFTSAYSRGML-ADGGGDLGVAYLPKPFTPTSLTETVRAALAV 759 >gi|297569334|ref|YP_003690678.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925249|gb|ADH86059.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 520 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEM 59 + ILL EDD + K L + GY +++ A +++ P LLL+D+VMPE+ Sbjct: 400 ETILLVEDDPTILTVTTKILQELGYRILAAATPREALTLAQQQHDLP-DLLLSDVVMPEI 458 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +G ELA + PD++ +F++G+ A + + + L KPF ++DL +++ Sbjct: 459 NGRELAEKIRASRPDIRCLFMSGYPAEVIAHNGMLEEGINFLQKPFSMQDLASKI 513 Score = 40.4 bits (93), Expect = 0.078, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LL ED DD +I+AL + GY E + +N + + + L ++D MP +G Sbjct: 6 RVLLIEDSDDDAALIIRALKQGGYDPEHLRVDNAIELQQALPQNSWDLAISDYSMPGFNG 65 Query: 62 IELARRATELDPDLKVMFITG 82 +E P+L + ++G Sbjct: 66 LEALELVRATAPELPFILVSG 86 >gi|116623028|ref|YP_825184.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226190|gb|ABJ84899.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 684 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 4/106 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEM 59 + IL+ ED D++R F++ L + GY V+ +G A V E+ +LLTD+V+P M Sbjct: 564 ETILVVEDQDEVRCFVVDVLARRGYRVLQAGDGPQAL-AVAEQCTGKIDVLLTDVVLPGM 622 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +G ELA R EL P K+++ +G+ + ++ + KP+ Sbjct: 623 NGRELAERFRELRPATKIIYTSGYTQDLIADRGILHRDVNYVPKPY 668 >gi|27379599|ref|NP_771128.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27352751|dbj|BAC49753.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 480 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKMRPNLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELIAIVGRAL 119 >gi|148262577|ref|YP_001229283.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396077|gb|ABQ24710.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 456 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L + L K GYEV + NG A VREE L+L DI +P + G+E Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLVREEQPDLVLLDIQLPGIGGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + E D D+ V+ +T + ++ ++KPF+L +L Sbjct: 65 VLEKVKEFDEDIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDEL 111 >gi|295707236|ref|YP_003600311.1| sporulation initiation phosphotransferase F [Bacillus megaterium DSM 319] gi|294804895|gb|ADF41961.1| sporulation initiation phosphotransferase F (response regulator) [Bacillus megaterium DSM 319] Length = 123 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D +R L + L K GY NG A D +E+ L+L D+ + MD Sbjct: 1 MAEKILIVDDQYGIRILLTEVLQKEGYTTFQAANGFQAIDITKEQAPDLVLLDMKISGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R + D +KV+ +T + + + ++ +KPF + ++ V + + Sbjct: 61 GIEILKRLKQHDEAIKVIIMTAYGELGMIQEAKDLGALTHFAKPFDIDEIRKVVREYIPV 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|237666049|ref|ZP_04526037.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658996|gb|EEP56548.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 234 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 13/121 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+AEDD+D+ + L L +G+EVV +NG A K++EE L L D++MP M+ Sbjct: 1 MKYKILVAEDDNDIVKILKLYLDNSGFEVVYVDNGMDALKKIQEEHIDLALLDLIMPIMN 60 Query: 61 GIELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G EL + E+ ++F + A+++ D L+KPF +++ + Sbjct: 61 GYELTKNIREISNIPILIFSAKYEISDKILALSIGADD-------YLTKPFEPMEVIARI 113 Query: 115 N 115 N Sbjct: 114 N 114 >gi|253701299|ref|YP_003022488.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251776149|gb|ACT18730.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 461 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 62/116 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++I+L ++++ + R + L GY V + A + + + LL+TDI MP MDG+ Sbjct: 5 KRIMLVDNEEGLCRMMEAVLSDNGYAVTAHTRSFEAAESFQAGQWDLLVTDIKMPGMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ + DP + V+ +T +A V ++ + +L+KPF +L+ V L Sbjct: 65 ELLQKVKQKDPAIPVIMVTAYATVEMSIQALRKGAYDMLTKPFEPEELLYRVKNAL 120 >gi|307295016|ref|ZP_07574858.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306879490|gb|EFN10708.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 818 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 5 ILLAEDDDDMR--------RFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIV 55 +LL ED+D +R R K L + GY+V++ N+G + + E LL++D+V Sbjct: 689 VLLVEDEDMVRAVAERALTRQGYKVLTRQGYKVLTANDGEQGLEVLNGGEKIDLLISDVV 748 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MP MDG + RA PDL V+F++G+A L + N L KPF + L Sbjct: 749 MPNMDGPSMVARARAAHPDLPVLFMSGYAEEQLRKSIDI-ANVAFLPKPFSVSQLAEAAR 807 Query: 116 RLLTIK 121 L + Sbjct: 808 DALATR 813 >gi|322421490|ref|YP_004200713.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127877|gb|ADW15437.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 879 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + IL+ EDD+ +RR L GY V+ +G A +K E E L++ D +MP+ + Sbjct: 760 ETILVGEDDEALRRLSQNVLTHYGYRVIEAVDGQDAIEKFVEFGEGIHLVMLDAIMPKKN 819 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E L P LK +F++G+A D + + + KP DLV +V +L Sbjct: 820 GKEACEAMRALRPGLKTIFMSGYAREIFPEDEAPDERSAFIQKPVSPCDLVAKVREML 877 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +D + R++LI LG G+++ +G V + L++ DIVMP MDG E+ Sbjct: 4 IYIVDDRELNRQYLITLLGYFGHQLEEAGDGCELLALVERQVPDLIILDIVMPNMDGTEV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAK---VLSKPFHLRDLVNEVNRLLTI 120 R P+ + + + A N ++ N + VLSKP R ++ V + L + Sbjct: 64 VERLRH-HPETASIPVIFYTATYRNQEARNIARTCGVRWVLSKPSEPRLILETVAKALGV 122 Query: 121 KN 122 ++ Sbjct: 123 ES 124 >gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 736 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ R F+ L G+ V + NG A D + + F ++L D+ MPE+DG+E Sbjct: 610 RILLAEDEQLNREFVTFFLLGEGHTVTTATNGCEALDLLERQDFDVVLMDVQMPELDGLE 669 Query: 64 LARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR L+ PD + I A A+ D A + LSKP + +L + R+L Sbjct: 670 ATRRIRSLEKPDKAHVPIIALTAYAMKEDRERVMAAGMDDYLSKPLDMDELRRSLARIL 728 >gi|323698960|ref|ZP_08110872.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323458892|gb|EGB14757.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 647 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 58/104 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LL +D++ +RRFL +L GYEV + NG A D ++ TDI MP MDGI Sbjct: 4 KRLLLVDDEEGVRRFLGLSLMDLGYEVETAANGQEALDLFDSFRPHIVFTDIKMPVMDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 +L + E PD +V+ ITG + L +S + ++KP + Sbjct: 64 DLLKAIKERSPDTEVVMITGHGDMDLAIESLKFDASDFITKPIN 107 >gi|302038879|ref|YP_003799201.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606943|emb|CBK43276.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 786 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 ILL ED+ +R L GY V +G A D +R LLLTD+VMP M+G Sbjct: 665 ILLVEDEPAVRLLTQHILRTHGYTVHEAEDGFQALDLIRRNALHIDLLLTDLVMPGMNGK 724 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA R +LKV++++G++ + L KPF DL+ V +L Sbjct: 725 ELAMRLRSHFAELKVLYMSGYSDNPPVTGDETQGHTTFLQKPFSPEDLIRMVREIL 780 >gi|317050221|ref|YP_004111337.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] gi|316945305|gb|ADU64781.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] Length = 450 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD M R L + L KAG +VV ++ A D + + F L+L+D MP++ G + Sbjct: 3 QILIVDDDQAMCRLLKRLLQKAGMDVVCKSDPHEAVDVLSRQEFDLVLSDFYMPQLTGED 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L P V+ +T FA++ ++ + KPF D+++ V R+L Sbjct: 63 ILHHVKNLQPATDVIIMTAFASIEHAVNAMRSGAYDYIVKPFQNDDVLHAVGRVL 117 >gi|170739207|ref|YP_001767862.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168193481|gb|ACA15428.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 754 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + +L+ +D+ +R +++ L GY + +G + E P LL+TDI +P +DG Sbjct: 636 ETVLIVDDETAVRGLIVEVLEDLGYRALEAADGPGGLAILTSETPIDLLVTDIGLPGLDG 695 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A P LKV+FITG+A A ++L+KPF + + + ++ Sbjct: 696 RRLADLARAARPGLKVLFITGYAETAARAGGMLAPGMELLTKPFPIETIATRIRTMI 752 >gi|94268821|ref|ZP_01291291.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451451|gb|EAT02291.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 461 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 56/103 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +D+ + L + L + GYEV +G A + +++ L++TD+ MP +DG+ Sbjct: 2 QTILVVDDEPNYLVILEELLREEGYEVFCAESGQQALEIIKQSDLDLVITDMRMPGLDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 EL + + E +PDL V+ IT F V + L+KPF Sbjct: 62 ELLKSSKERNPDLPVIMITAFGEVEKAVAAMRTGAFNYLTKPF 104 >gi|295680798|ref|YP_003609372.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295440693|gb|ADG19861.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 794 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 5/108 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD ++ + + +G G+ + A + PF +L+TD+ MP++DGIE Sbjct: 680 RILLVDDDMNLAQATNELIGLLGHSGKFTTSPREALQWLANGPFDVLITDLRMPDIDGIE 739 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHLRDL 110 LA++AT P L V+F +G+A NP A P LSKPF + +L Sbjct: 740 LAKQATARAPSLHVVFSSGYA----NPQLPALPFRWTALSKPFTIDEL 783 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD +++ + L GY V+ + A +R L+ +D+VMP + Sbjct: 538 SETILVVEDDRNVQSTALDTLSDLGYRVLKADAAEEALAVLRSGVHIDLVFSDVVMPGPL 597 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + L P LKV+F +G+ A+ +LSKP+ L +++ ++L Sbjct: 598 RSTDMVAQGLRLLPHLKVLFTSGYTQNAIVHGGRLDPGVDLLSKPYSREQLAHKIRQVL 656 >gi|119897781|ref|YP_932994.1| putative signaling protein [Azoarcus sp. BH72] gi|119670194|emb|CAL94107.1| conserved hypothetical signaling protein [Azoarcus sp. BH72] Length = 1089 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D R ++ G AG+E + ++GA A VRE L++ DI+MP MDG E Sbjct: 3 RILVVDDHASNRELIVTLAGYAGHEALEASDGADALALVREHHPDLVICDILMPTMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS-NAPKN---AKVLSKPFHLRDLVNEVNRLL 118 R+ DPDL + + A P++ N +N ++L KP D++ E+ R L Sbjct: 63 FVRQ-LRADPDLAATEVMFYTANYHEPEARNLARNLGVGRILVKPSIPEDILEEIERAL 120 >gi|114776622|ref|ZP_01451665.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] gi|114552708|gb|EAU55139.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] Length = 368 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 + ILLA+DD+++ + K L Y V++ +G +A + R+ L++ DI+MP++ Sbjct: 241 GETILLADDDENVLQTFAKVLTSINYRVLTARDGRAALESYRQHRGEIDLVILDIIMPKL 300 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++AR+ E+ P K++F TG+ + N +VL KP+ L + + R+L Sbjct: 301 TGPDVARQIREIAPGAKLLFATGYDKES--DHHGMTGNIEVLDKPYDLAKVSKSIRRIL 357 >gi|66576246|gb|AAM72605.2| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 358 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDG 61 K+L+ EDD+ +R+F+++AL + G+E NG +A + + + F LLLTD+VM M+G Sbjct: 238 KVLVVEDDEIVRKFVVQALDEEGFETREAENGQAALELLEKGDFKPELLLTDLVMRGMNG 297 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + P +KV++++G+ ++ L KPF + L+++V +L Sbjct: 298 RMLYEKVCDFMPGIKVIYMSGYPKDIISRHGVLDTGLSFLLKPFPVPVLLDKVKDVL 354 >gi|89069448|ref|ZP_01156798.1| PAS sensor Signal Tranduction Histidine Kinase [Oceanicola granulosus HTCC2516] gi|89044929|gb|EAR51016.1| PAS sensor Signal Tranduction Histidine Kinase [Oceanicola granulosus HTCC2516] Length = 955 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMD 60 + ILL EDD ++R L GY ++ N A E F +LLTD+VMP E+ Sbjct: 696 ETILLVEDDPEVRGATAALLQDLGYSTLTAANPDEALVSFGEGARFDMLLTDVVMPGEVT 755 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R PDL V+FI+GF+ + D K + LSKPF L +V +L Sbjct: 756 SREMVERIQGERPDLPVLFISGFSRREIVHDGRVDKGVQFLSKPFTQETLARKVREVL 813 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 50/84 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD +R L L + G EV + A A ++ F L+LTDI +P+ +G E Sbjct: 841 RVLLVEDDALIRMDLAMMLEEMGIEVAEAASVAEALAQLETGGFDLMLTDIGLPDGNGEE 900 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 LAR A E P+L+++F TG + +A Sbjct: 901 LAREARERHPELRLIFATGRSQLA 924 >gi|294664668|ref|ZP_06730002.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605552|gb|EFF48869.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 951 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEM 59 ++ +LL ED+ +R + + L +AGY V+ G++A +++R +E +L+TD+ + + Sbjct: 828 SRTVLLVEDETAIRVLISEVLTEAGYRVIETAEGSAAVERLRSQEHIDVLVTDVGLTGGL 887 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A + P L V+F+TG+AA A +VL+KPF +L V +LL Sbjct: 888 NGRQVADAGRQSRPALPVLFVTGYAASAAVGAGQLDDGMEVLTKPFQAIELERRVAQLL 946 >gi|168483613|ref|ZP_02708565.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|172042917|gb|EDT50963.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|332205113|gb|EGJ19176.1| response regulator [Streptococcus pneumoniae GA47368] Length = 232 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 10/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G +L L P+ +FIT + LN ++ ++KPF R+LV V+ Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLNLGAD-----DFIAKPFSPRELVLRVH 115 Query: 116 RLL 118 +L Sbjct: 116 NIL 118 >gi|330971293|gb|EGH71359.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 676 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + LG+ GY + A + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRALVSEVLGELGYTFIEAGEATDAVPILESGRRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 674 >gi|319783770|ref|YP_004143246.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169658|gb|ADV13196.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 857 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V ++G A + + ++++D+VMPEMDG Sbjct: 740 VLLVEDEDAVRMGGMRALTSRGYTVHEASSGVEALEVFEALGGKVDIVVSDVVMPEMDGP 799 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + PD+K +F++G+A A + A + L KPF L+ L V +L Sbjct: 800 TLLGELRKRQPDIKFVFVSGYAEDAFARNLPADAHFGFLPKPFSLKQLATIVKDVL 855 >gi|294625165|ref|ZP_06703808.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600537|gb|EFF44631.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 951 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEM 59 ++ +LL ED+ +R + + L +AGY V+ G++A +++R +E +L+TD+ + + Sbjct: 828 SRTVLLVEDETAIRVLISEVLTEAGYRVIETAEGSAAVERLRSQEHIDVLVTDVGLTGGL 887 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A + P L V+F+TG+AA A +VL+KPF +L V +LL Sbjct: 888 NGRQVADAGRQSRPALPVLFVTGYAASAAVGAGQLDDGMEVLTKPFQAIELERRVAQLL 946 >gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] Length = 231 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ + + + L K GY+V + NG A D R + L++TDI+MP+MDG + Sbjct: 4 ILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMDGYDF 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L D +FIT S L+KPF R+L V LL Sbjct: 64 IDAVLQLREDQPFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKNLL 117 >gi|157373880|ref|YP_001472480.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] gi|157316254|gb|ABV35352.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] Length = 210 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 59/113 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AEDD+D+R ++ L G++V++ + A + F + L D+VM M G+E Sbjct: 3 RVLIAEDDEDLRTNMVDILELEGFDVIAVPSAEEAILACQTHSFDIALMDLVMSGMTGVE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + +P + V+ +T +A V D+ VL+KPF DLV + R Sbjct: 63 AISNLRQENPFMAVVIVTAYATVDTAVDAMKKGADSVLTKPFKSVDLVMTIRR 115 >gi|66045686|ref|YP_235527.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63256393|gb|AAY37489.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 676 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + LG+ GY + A + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRALVSEVLGELGYTFIEAGEATDAVPILESGRRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 674 >gi|226227836|ref|YP_002761942.1| putative two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091027|dbj|BAH39472.1| putative two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 358 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ L+ +D+ MR L + + G+E + ++G+ A +++ EP L+L+D MP MDG Sbjct: 10 RRCLIVDDEPSMRGILRRLMTAEGFECLEASSGSEALERLAAEPVPLMLSDFHMPGMDGA 69 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R+ E P V+ IT + V L L+KPF + ++ V + L Sbjct: 70 ELLRQVRERWPHTAVVMITAISDVNLAVRCLDSGALDYLTKPFSIEEVRARVAQAL 125 >gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC 43243] gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC 43243] Length = 239 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 62/114 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MDG+E Sbjct: 15 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + + + + KV+ ++ +A + + KPFHL++L + L Sbjct: 75 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 128 >gi|116749830|ref|YP_846517.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698894|gb|ABK18082.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 991 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL +D+ ++ R K L GY V S + A + E P F L++TD MP + Sbjct: 871 ERILFVDDEVELARVADKMLTHLGYTVSSHTSSTDALEDFLERPDQFDLIITDHTMPNLT 930 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD-SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+LAR + PD+ ++ TGF+ LN D + A + + KP + DL V ++L Sbjct: 931 GIDLARECLRIRPDMPIIICTGFSE-RLNEDVAKAAGIRQFVMKPLVIDDLARIVRKVL 988 >gi|83592721|ref|YP_426473.1| acetoacetate metabolism regulatory protein AtoC [Rhodospirillum rubrum ATCC 11170] gi|83575635|gb|ABC22186.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodospirillum rubrum ATCC 11170] Length = 460 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+ +DD+ +R+ L L K G VV+ +G A + R + ++L DI MP M+G+ Sbjct: 6 QTVLIVDDDEAIRQMLSAFLSKEGLRVVTARDGLEAIEVFRLQRTDVVLLDIRMPRMNGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E A+ E+D V+ +T FA V + + KPF L ++ V R L I++ Sbjct: 66 EAAKAILEMDRGTAVILMTAFAEVCTAVQAIKDGAFDYVIKPFDLEEIRLLVRRALEIRS 125 >gi|21674871|ref|NP_662936.1| response regulator [Chlorobium tepidum TLS] gi|1381649|gb|AAB02725.1| orfM [Chlorobaculum tepidum] gi|21648094|gb|AAM73278.1| response regulator [Chlorobium tepidum TLS] Length = 120 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 14/117 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +DD +R+F+ L K Y V NGA K+++E S+++TD++MPE +GI Sbjct: 2 KILVIDDDPSVRKFITTTLKKENYAVTEAENGAEGLIKLQQEKDISIIITDLIMPEKEGI 61 Query: 63 ELARRATELDPDLKVMFITG--------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 E +++P +K++ I+G F +A +NA L KPF ++L+ Sbjct: 62 ETIMEVRKINPAVKILAISGGGKAGPENFLLLADVVGANA-----TLKKPFGGQELL 113 >gi|115374194|ref|ZP_01461480.1| two component transcriptional regulator, Fis family [Stigmatella aurantiaca DW4/3-1] gi|115368737|gb|EAU67686.1| two component transcriptional regulator, Fis family [Stigmatella aurantiaca DW4/3-1] Length = 493 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L+A+DD+ MR L L G EV +G +A +++R+E + LL++D+ MP MDG+E Sbjct: 36 RALVADDDNAMRYTLRGILDDLGMEVDEAPHGVAALERIRQESYHLLISDLRMPHMDGLE 95 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R T P KV+ IT + ++ KPF + +LV + R ++ Sbjct: 96 LLRHLTGSLP--KVILITAHGSERHAVEAMKAGAYDYFHKPFEVDELVAVIQRAVS 149 >gi|39996518|ref|NP_952469.1| response regulator [Geobacter sulfurreducens PCA] gi|39983399|gb|AAR34792.1| response regulator [Geobacter sulfurreducens PCA] gi|307634842|gb|ADI84257.2| response regulator [Geobacter sulfurreducens KN400] Length = 141 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD D+ F+ L G +V+ NG+ A + + ++++TD MP M+G E Sbjct: 20 RVLVVDDDRDILIFVRLVLENEGIDVICAENGSQALELLANNTCAVMITDQNMPLMNGFE 79 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA RA L P+L V TG + + + +V KPF+ L ++ +L Sbjct: 80 LAHRARRLKPELTVFMGTGHIYPGIQAQAQSAGIRQVFGKPFNFPHLFAALHEVL 134 >gi|121998947|ref|YP_001003734.1| response regulator receiver protein [Halorhodospira halophila SL1] gi|121590352|gb|ABM62932.1| response regulator receiver protein [Halorhodospira halophila SL1] Length = 120 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D MR+ + L + GYEV +G A K + F L++TD+ MP+MDGI Sbjct: 3 KILAVDDSASMRQMVTYTLKQQGYEVTEAVDGTDALTKAKAGGFDLVITDVNMPKMDGIT 62 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R L P K ++ +T +A + A L KPF LVN + +++ Sbjct: 63 LVRELRGL-PAFKFTPILLLTTESAPEKKQEGKAAGATGWLVKPFDPDQLVNTIKKVV 119 >gi|196232427|ref|ZP_03131280.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196223499|gb|EDY18016.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 157 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL EDD + + L ++G+ V+ NG +V F +LL D++MP + G Sbjct: 32 KKVLLLEDDPAFKEIMTDFLTESGFHVIGVTNGVEGVHQVLASDFEVLLCDMMMPTLPGD 91 Query: 63 ELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R + P L + +F+TG D A + +L+KPFH+ DL+ + Sbjct: 92 MFFRAVERMRPHLCDRFIFMTGHRGNTKVNDFIASVSGTILTKPFHVDDLLEMI 145 >gi|154253923|ref|YP_001414747.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157873|gb|ABS65090.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 966 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 + IL+AEDD+ +R +++ L GY V++ + ASA + P LL TD+VMP + Sbjct: 701 TETILVAEDDEAVRTVVVEMLNDLGYRVLTARDAASALTVLESGVPVDLLFTDVVMPGPL 760 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LAR+A E P + V+F +G+ ++ +LSKP+ L ++ ++L Sbjct: 761 KSTDLARKARERLPSIGVLFTSGYTENSIVHGGRLDPGVDLLSKPYTREALARKLRQVL 819 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD +R L + G V+ + A D + LL+TD+ +P+M G+EL Sbjct: 852 ILLCEDDALIRMSTADMLREVGLIVIETDTAQEALDIIENGAVDLLITDVGLPDMSGVEL 911 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 A + D+ V+F TG A + ++ + V+SKP+ + +L +++L+ + Sbjct: 912 ALALRKSRRDIPVIFATGHAEL---DGADGILRSAVVSKPYAVIELKRCIDQLMAL 964 >gi|90420034|ref|ZP_01227943.1| putative sensor histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336075|gb|EAS49823.1| putative sensor histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 555 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL+ +DD + + L G+EVV ++GA A + + E F L++TD MP+M+G Sbjct: 443 RILMVDDDPLISMSTVDMLEDLGHEVVEASSGAKALEILNAGEQFDLMITDFSMPKMNGG 502 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR EL P L ++ TG+A + + P+ L KP+ L E+ +L+ Sbjct: 503 LLARAVHELRPSLPILLATGYAEMPSGSEIELPR----LGKPYTQAQLAAEIGKLV 554 >gi|282882486|ref|ZP_06291107.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis 315-B] gi|281297628|gb|EFA90103.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis 315-B] Length = 223 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ D+ + + K+L ++GYEV NG A + + E + L++ D+ +PE+DG+E Sbjct: 2 RILIVEDEKDLCQMIAKSLKESGYEVDIAYNGNEAMELLDVENYDLIVLDLNLPEIDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + D K++ ++ + + + LSKPFHL +L + R LT +N Sbjct: 62 ILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARI-RSLTRRN 119 >gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ EDD +R L +L AG+ VV GA A VRE+P L++ D+++P+ DG Sbjct: 4 SERLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDG 63 Query: 62 IELARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ RR P V+F+T A ++KPF+L +LV + Sbjct: 64 FEVVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRA 123 Query: 117 LL 118 +L Sbjct: 124 IL 125 >gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD + FL L K GYEV NG A DK+R E F+L+L DI+MP++D Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-------KPFHLRDLVNE 113 G + +L ++ ++F+T DS K +S KPF L +L Sbjct: 61 GFGAIKGIKKL-TNIPIIFLTA-------KDSQQDKIKGFISGCDDYITKPFDLVELSLR 112 Query: 114 VNRLL 118 V+ +L Sbjct: 113 VSAIL 117 >gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 915 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED++ ++ +++ L G++V NG A KV+++ F ++L D+ MPEMDG E Sbjct: 666 RVLVAEDNEINQQVVLRLLQALGHQVTIVANGVEAVQKVQQQSFDVILMDVQMPEMDGEE 725 Query: 64 LARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 RR L + +++ +T +A + A L+KP L+DL N ++ Sbjct: 726 ATRRIRALGNQIQQPRIIALTVYALADVRERCLAAGMDGFLTKPVRLQDLRNALS 780 >gi|218781020|ref|YP_002432338.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218762404|gb|ACL04870.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 190 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIEL 64 L+ +D+ R L + + AG+ V S +G A + +R++ + L++TD++MP E+DG+ + Sbjct: 7 LVVDDETSARMLLERGVANAGFSVESAEDGVQATNMIRKKLYDLVVTDLMMPGEVDGVGV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A P V+ ITG A+V ++ L KP HL +L ++ R+ Sbjct: 67 LEAAKARSPRTSVVLITGHASVETAVEAMKKGADDYLQKPIHLDELAIKIGRV 119 >gi|78357398|ref|YP_388847.1| two component Fis family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219803|gb|ABB39152.1| two component transcriptional regulator, Fis family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 465 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ ILL EDD+ + L +AL GY V S + R+ F L+LTD+++P M Sbjct: 1 MSEHILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E + E P ++ +T ++ L ++ SKPF L++L V R L Sbjct: 61 GVEAIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRAL 118 >gi|220915565|ref|YP_002490869.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953419|gb|ACL63803.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 481 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 63/115 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D +MR L +AG+ V +GASA +V+ E F ++LTD+ MP +DG+E Sbjct: 30 KVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGME 89 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + P+ +V+ +T + + ++ L+KPF +++ V + L Sbjct: 90 VLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKAL 144 >gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter carbinolicus DSM 2380] gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 391 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+ + + L G+EV++ ++G + V +E L+L D +MP MD Sbjct: 1 MSSRILVVDDEAIILQLATMVLTSRGFEVLTAHSGQECLEIVEQESPDLVLLDYMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ R + PD V+ +TG + + D A + KPF +DLV + +L I Sbjct: 61 GMTTLRHLRQAHPDTYVIMLTGKGSEQIAVDVMKAGAADYILKPFKNQDLVERIENVLRI 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|21674198|ref|NP_662263.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 337 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDG 61 K+L+ EDD+ +R+F+++AL + G+E NG +A + + + F LLLTD+VM M+G Sbjct: 217 KVLVVEDDEIVRKFVVQALDEEGFETREAENGQAALELLEKGDFKPELLLTDLVMRGMNG 276 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + P +KV++++G+ ++ L KPF + L+++V +L Sbjct: 277 RMLYEKVCDFMPGIKVIYMSGYPKDIISRHGVLDTGLSFLLKPFPVPVLLDKVKDVL 333 >gi|253699135|ref|YP_003020324.1| GAF sensor hybrid histidine kinase [Geobacter sp. M21] gi|251773985|gb|ACT16566.1| GAF sensor hybrid histidine kinase [Geobacter sp. M21] Length = 837 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEM 59 ++ IL+AED ++RR + L + GY V+ +G A +K ++ L++ D+VMP M Sbjct: 705 SETILVAEDALEVRRVTTELLQQHGYRVIEAADGCEALEKFLAHQDQIKLVIMDLVMPRM 764 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G + + +PDLKV+F + + ++ L+KP R L+ + RLL Sbjct: 765 NGRDAFDAIAKCNPDLKVLFTSAYPPEEVDAGRAVLPEGSFLAKPCQPRPLLLAIRRLL 823 >gi|39995705|ref|NP_951656.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982469|gb|AAR33929.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298504717|gb|ADI83440.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 470 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 65/117 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ +D+ +R L + L K GY V + +G A +++++E + L++TD+ MP M G Sbjct: 3 NIDVLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDENYGLVITDLKMPGMSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ + L P++ V+ ITGF+ V ++ ++KPF + +V + L Sbjct: 63 MEVLKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQITEKVRKAL 119 >gi|317503870|ref|ZP_07961879.1| response regulator [Prevotella salivae DSM 15606] gi|315665026|gb|EFV04684.1| response regulator [Prevotella salivae DSM 15606] Length = 519 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 13/128 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N K+L +D+ D+ + I L K GY VV+ +NG A + R+E F L+L D +MP + G Sbjct: 3 NGKLLWVDDEIDLLKGHIIFLEKKGYHVVTMSNGVDAIELCRKESFDLILLDEMMPGLTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP-------------FHLR 108 IE +R ++ P+ V+ +T + + K A L KP H R Sbjct: 63 IETLQRIKDILPETPVVMVTKSEEEDIMNQAIGRKIADYLIKPVNPNQILIALKKNIHHR 122 Query: 109 DLVNEVNR 116 D++NEV + Sbjct: 123 DIINEVTQ 130 >gi|253701498|ref|YP_003022687.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776348|gb|ACT18929.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 849 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMP 57 ++ +LL ED++ + K L + G+ V+ A + E+P L+LTD+VMP Sbjct: 727 LSGTVLLVEDEEMLLWLATKLLEELGFSVIQAPGPREAI-AICEDPELHLDLILTDVVMP 785 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EM+G E+ R + PD KV+F++G+ + + + + + KP LR+L ++ R+ Sbjct: 786 EMNGSEMVDRIKQTRPDQKVLFMSGYTSDDVVRRGILEQGMQYIQKPLDLRNLGEKIGRI 845 Query: 118 L 118 L Sbjct: 846 L 846 >gi|153808459|ref|ZP_01961127.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185] gi|149128781|gb|EDM19998.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185] Length = 1339 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 9/123 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ ED+D++R +L++ L + Y V +C+NG A + E L+++DI+MPEM G Sbjct: 1074 HRRILIVEDNDELRNYLLQTLSEE-YTVQTCSNGKEALTIIPEYKPELVISDIMMPEMRG 1132 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + EL +++ I ALN + + K+ + KPF++ L V+ Sbjct: 1133 DELCK---ELKNNIETSHIPVILLTALNNEKDILSGLKIGADEYILKPFNIGILKATVDN 1189 Query: 117 LLT 119 LLT Sbjct: 1190 LLT 1192 >gi|120601400|ref|YP_965800.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561629|gb|ABM27373.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1140 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + +IL EDDDD + + L GY V + N A + +RE P F L+LTD MPE Sbjct: 1017 HGRILFVEDDDDQLHTIPRVLESLGYSVRAFKNPLRALEALREHPAMFDLVLTDFDMPEA 1076 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G+ELA + ++ P + V+ ++G VA + A ++ KP++ + + + R+L+ Sbjct: 1077 NGLELAAKIGDIAPQVPVILVSG-REVAAEGAARAGNIRTMIHKPYNRNIIADALARVLS 1135 >gi|27378097|ref|NP_769626.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27351243|dbj|BAC48251.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 371 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R L L Y+ V + SA +++ LLL D++MP MDGIE Sbjct: 9 RILVVDDEAAQMRALCDTLPVEDYDAVGFTDARSALAELQRTKCDLLLADLMMPGMDGIE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L R A E+DP L + +TG +A ++ + KPF L ++ + R L ++ Sbjct: 69 LLRAAREIDPHLVGIIMTGDGTIATAVEAMKAGALDYILKPFKLSVVIPVLERALAVR 126 >gi|78047261|ref|YP_363436.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927392|ref|ZP_08188640.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|78035691|emb|CAJ23382.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542213|gb|EGD13707.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 951 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEM 59 ++ +LL ED+ +R + + L +AGY V+ G++A +++R +E +L+TD+ + + Sbjct: 828 SRTVLLVEDETAIRVLISEVLTEAGYRVIETAEGSAAVERLRSQEHIDVLVTDVGLTGGL 887 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A + P L V+F+TG+AA A +VL+KPF +L V +LL Sbjct: 888 NGRQVADAGRQSRPALPVLFVTGYAASAAVGAGQLDDGMEVLTKPFQAIELERRVAQLL 946 >gi|254504668|ref|ZP_05116819.1| response regulator receiver domain, putative [Labrenzia alexandrii DFL-11] gi|222440739|gb|EEE47418.1| response regulator receiver domain, putative [Labrenzia alexandrii DFL-11] Length = 131 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +ILL EDD+ +R F+ +AL G+ V +G A + + E + LLL+DI MP MDG Sbjct: 3 RILLTEDDEAVRSFVKRALELDGHTVDPAEDGGEAVEILTREKGSYDLLLSDIKMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I LA P+L ++ +TGFA V++KPF L D+ Sbjct: 63 IALALHTARDYPNLPILLMTGFADQRERASGLDALVHDVVTKPFSLADI 111 >gi|167464154|ref|ZP_02329243.1| two-component response regulator of modulation of flagellar [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382380|ref|ZP_08056287.1| hypothetical protein PL1_2660 [Paenibacillus larvae subsp. larvae B-3650] gi|321153733|gb|EFX46108.1| hypothetical protein PL1_2660 [Paenibacillus larvae subsp. larvae B-3650] Length = 120 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K GYEVV N+G A +K +E L+ DI MPEM Sbjct: 1 MANRILVVDDAAFMRMMIRDILSKNGYEVVGEANDGNGAIEKFKELRPDLITMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + ++DP KV+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGITALKEIKKMDPSAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIKKTL 119 >gi|116252477|ref|YP_768315.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257125|emb|CAK08220.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 720 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 KILL +DD + + L G+EVV N+GA A + + + F L++TD MP M G Sbjct: 571 KILLVDDDALIAMSSVDMLEDLGHEVVEANSGAQALELISSGQHFDLVITDYSMPGMTGA 630 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA+ A ++ P L ++ TG+A + D + P+ L+KP+ L E+ + + Sbjct: 631 QLAQAARDIHPGLPMVLATGYADLPAGTDIDLPR----LAKPYDQAQLAKEIAKAM 682 >gi|77748602|ref|NP_642000.2| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 951 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEM 59 ++ +LL ED+ +R + + L +AGY V+ G++A +++R +E +L+TD+ + + Sbjct: 828 SRTVLLVEDETAIRVLISEVLTEAGYRVIETAEGSAAVERLRSQEHIDVLVTDVGLTGGL 887 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A + P L V+F+TG+AA A +VL+KPF +L V +LL Sbjct: 888 NGRQVADAGRQSRPALPVLFVTGYAASAAVGAGQLDDGMEVLTKPFQAIELERRVAQLL 946 >gi|21674217|ref|NP_662282.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] gi|21647382|gb|AAM72624.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 808 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL+ ED+ ++ L K+G++V + N+ + A E L+LTD+VMP M+G+ Sbjct: 690 ILVVEDEPEILNLCQVMLQKSGFKVYAANSPSEAIVIAEENSGKIDLVLTDVVMPGMNGV 749 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +LA + + P +V+F++G+ A + V+ KPF + LV +V L ++ Sbjct: 750 DLASKLLTISPGFRVLFMSGYPADVIASHGVDNPLVNVIRKPFTFKALVEKVQESLAVE 808 >gi|317479492|ref|ZP_07938623.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316904312|gb|EFV26135.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1347 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +QKIL+ ED+D++R +L + L + Y + C+NG A V+E +L+++DI+MPEM G Sbjct: 1083 HQKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRG 1141 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNR 116 EL L D++ I ALN D N + + + KPF++ L + Sbjct: 1142 DELCHI---LKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIAN 1198 Query: 117 LLT 119 LLT Sbjct: 1199 LLT 1201 >gi|270293538|ref|ZP_06199740.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275005|gb|EFA20865.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1347 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +QKIL+ ED+D++R +L + L + Y + C+NG A V+E +L+++DI+MPEM G Sbjct: 1083 HQKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRG 1141 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNR 116 EL L D++ I ALN D N + + + KPF++ L + Sbjct: 1142 DELCHI---LKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIAN 1198 Query: 117 LLT 119 LLT Sbjct: 1199 LLT 1201 >gi|220929401|ref|YP_002506310.1| AraC family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999729|gb|ACL76330.1| two component transcriptional regulator, AraC family [Clostridium cellulolyticum H10] Length = 544 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++L+ ED++ +R +I + EV +NG A D VR +++TDI MPEM+ Sbjct: 3 RLLVVEDEEMIRNKIIYNTNWKEHGVIEVFQASNGLEAIDIVRNNNIDIVITDIQMPEMN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R L+ +K + IT +A +S + KPF +DL+ V +LL Sbjct: 63 GIELIREIRSLNRGIKCIIITAYAEFEYAKESVKLNVNDYILKPFKSKDLLYIVKKLL 120 >gi|319785712|ref|YP_004145187.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Pseudoxanthomonas suwonensis 11-1] gi|317464224|gb|ADV25956.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Pseudoxanthomonas suwonensis 11-1] Length = 475 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 ++++ + +DD +R L AL AGYEV N ASA +VR P LL TD+ MP Sbjct: 5 SRRVWVVDDDRSVRFVLATALRDAGYEVDGFENAASALSALRVRGAP-DLLFTDVRMPGE 63 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG++L R P L V+ ++ + VA + + LSKPF L D V R L Sbjct: 64 DGLKLLDRLKSAHPQLPVIVMSAYTDVASTASAFRGGAHEFLSKPFDLDDAVALAARAL 122 >gi|258621745|ref|ZP_05716776.1| hypothetical protein VMD_18220 [Vibrio mimicus VM573] gi|258585976|gb|EEW10694.1| hypothetical protein VMD_18220 [Vibrio mimicus VM573] Length = 447 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++D+ + L + L + Y VV+ +NGA A ++E P ++++D+ MPEMDG + Sbjct: 13 ILLLDDENDILKALNRVL-RMDYNVVTFDNGADALQHLQENPVHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ P + +TG+A + + NA +SKP+ Sbjct: 72 LAKAREMQPQTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|163756416|ref|ZP_02163529.1| response regulatory protein, sigma 54 related [Kordia algicida OT-1] gi|161323524|gb|EDP94860.1| response regulatory protein, sigma 54 related [Kordia algicida OT-1] Length = 387 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L+K L + YEV +G + + V++E + L+L DI MP+MDG Sbjct: 3 KILVIEDESAIRRVLVKILSEENDTYEVSQAEDGLAGIEMVKKEDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ A ++ P+ + I+G + ++ +SKP L L+N V L Sbjct: 63 VEVLEAAKKIKPETPFVMISGHGDLDTAVNTMRIGAFDYISKPPDLNRLLNTVRNAL 119 >gi|197123143|ref|YP_002135094.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196172992|gb|ACG73965.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 475 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 46/80 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDD+ R L + LG AGY V + G A ++ P +L D+VMPE DG E+ Sbjct: 7 VLVIEDDDEARAPLCEFLGAAGYRVRAARGGNEALAELGSAPAGAVLLDLVMPEPDGFEV 66 Query: 65 ARRATELDPDLKVMFITGFA 84 RR E DP L V+ ++ + Sbjct: 67 LRRVRERDPALPVIVLSALS 86 >gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 226 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 62/114 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MDG+E Sbjct: 2 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + + + + KV+ ++ +A + + KPFHL++L + L Sbjct: 62 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 115 >gi|262171876|ref|ZP_06039554.1| response regulator [Vibrio mimicus MB-451] gi|261892952|gb|EEY38938.1| response regulator [Vibrio mimicus MB-451] Length = 447 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++D+ + L + L + Y VV+ +NGA A ++E P ++++D+ MPEMDG + Sbjct: 13 ILLLDDENDILKALNRVL-RMDYNVVTFDNGADALQHLQENPVHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ P + +TG+A + + NA +SKP+ Sbjct: 72 LAKAREMQPQTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|241912487|gb|ACS71957.1| integral membrane sensor histidine kinase/response regulator [Azospirillum brasilense] Length = 711 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDG 61 ++L+ ED+ + ++ L + G+EV + ++GA+A + + ++ F +++TD+VMP + G Sbjct: 592 RLLVVEDNALVLMATVEGLTQEGFEVETADHGAAALEILEQDTAFDVIVTDVVMPYGVSG 651 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I+LARR E P ++V+ I+G++ +L S +A VL KPF L V LL Sbjct: 652 IDLARRVQERWPGIRVLLISGYSPESL---SGLKADAAVLPKPFTPDQLAARVRALL 705 >gi|311235082|gb|ADP87936.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1139 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + +IL EDDDD + + L GY V + N A + +RE P F L+LTD MPE Sbjct: 1016 HGRILFVEDDDDQLHTIPRVLESLGYSVRAFKNPLRALEALREHPAMFDLVLTDFDMPEA 1075 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G+ELA + ++ P + V+ ++G VA + A ++ KP++ + + + R+L+ Sbjct: 1076 NGLELAAKIGDIAPQVPVILVSG-REVAAEGAARAGNIRTMIHKPYNRNIIADALARVLS 1134 >gi|226325945|ref|ZP_03801463.1| hypothetical protein COPCOM_03758 [Coprococcus comes ATCC 27758] gi|225205487|gb|EEG87841.1| hypothetical protein COPCOM_03758 [Coprococcus comes ATCC 27758] Length = 474 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 56/86 (65%), Gaps = 3/86 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMP 57 M +++A+D++++RR L++ + + G+EVV NGA A + V + LLLTDI MP Sbjct: 1 MKYTVVVADDEEEIRRSLVRRVKWEEIGFEVVGEAENGADALELVEKLEPDLLLTDIKMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF 83 + GIELAR E+ P +++ F++GF Sbjct: 61 FLSGIELARAVREVRPMVQIAFLSGF 86 >gi|170720979|ref|YP_001748667.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169758982|gb|ACA72298.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 795 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 9/121 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +LL +DD +R L L + GY+V ++G A ++ +E LLLTD MPE +G Sbjct: 680 DRMVLLVDDDHLVRDMLGDVLRQYGYQVRQAHSGEQALAQLDDE-IDLLLTDFAMPEFNG 738 Query: 62 IELARRATELDPDLKVMFITGFAAV-ALN-PDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +LA A E P L V+F+TG+A + L+ PDS V+ KP +L ++ LL Sbjct: 739 AQLALAARERHPRLPVVFLTGYAELEGLDLPDS------LVMQKPVQAEELARVLDELLR 792 Query: 120 I 120 + Sbjct: 793 V 793 >gi|299147659|ref|ZP_07040723.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298514446|gb|EFI38331.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1343 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ L K Y + +C NG A +RE L+++DI+MPEM G Sbjct: 1078 QRILIVEDNDDLRNYLVDML-KTSYNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1136 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + DL++ I AL + N + ++ +++PF + L + L Sbjct: 1137 EL---CSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITRPFSVGILKATIKNL 1193 Query: 118 L 118 L Sbjct: 1194 L 1194 >gi|218886949|ref|YP_002436270.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757903|gb|ACL08802.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1191 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++IL EDDDD + + L GY V N A VRE P F L++TD MPE Sbjct: 1069 SERILFVEDDDDQLHTIPRVLESLGYTVRPFKNPLLALAAVREHPASFDLVITDFDMPEA 1128 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ELAR+ ++ P++ ++ ++G A A V KP++ L + + R+ Sbjct: 1129 NGLELARKMGDIAPNMPIILVSGREVAAEGAAVAGNIKAMV-HKPYNRNILADAIRRVF 1186 >gi|111075014|gb|ABH04866.1| stand-alone receiver (REC) domain [Heliobacillus mobilis] Length = 136 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 61/114 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D++++ L + L GY + +A +K++E+ + ++L DIVMPEMDGIE Sbjct: 6 QILLVDDEEELVLSLQRILQLEGYSADYTTSPLTAIEKIKEKKYHIVLADIVMPEMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L DP ++V+ +TG++ + L KPF D V E RL Sbjct: 66 LLAALKAYDPLVQVIMMTGYSTMDKTVRCLEKGANDYLLKPFPDLDRVMEAVRL 119 >gi|46581425|ref|YP_012233.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450847|gb|AAS97493.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] Length = 1139 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + +IL EDDDD + + L GY V + N A + +RE P F L+LTD MPE Sbjct: 1016 HGRILFVEDDDDQLHTIPRVLESLGYSVRAFKNPLRALEALREHPAMFDLVLTDFDMPEA 1075 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G+ELA + ++ P + V+ ++G VA + A ++ KP++ + + + R+L+ Sbjct: 1076 NGLELAAKIGDIAPQVPVILVSG-REVAAEGAARAGNIRTMIHKPYNRNIIADALARVLS 1134 >gi|294624071|ref|ZP_06702824.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601630|gb|EFF45614.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 113 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 3/104 (2%) Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGIELARRATEL 71 MR + + AL + GY+V+ ++G SA + R+ LLL++IVMP M+G ELARRA Sbjct: 1 MRAYTVGALRQLGYKVLEAHDGNSAMRLLERRDVKVDLLLSEIVMPGMNGWELARRAKAH 60 Query: 72 DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 P L+++F +G+ + + +A +L KPF DL V Sbjct: 61 LPGLRILFASGYPR-DFSATDVSRSDAGILVKPFTRSDLERAVR 103 >gi|260433750|ref|ZP_05787721.1| sensory box sensor histidine kianse/response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260417578|gb|EEX10837.1| sensory box sensor histidine kianse/response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 763 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL G+ V+ + A + E+P + +TD+VMP MDG Sbjct: 647 VLLVEDEAPVRAFATRALRLKGFTVLEAESAEDAL-CILEDPDLHVDVFVTDVVMPGMDG 705 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A E P ++V+F++G+ A N+ L KPF L L+ V R L Sbjct: 706 PTWVEKARETRPTVRVVFMSGYTEGAFGEAGPEVSNSVFLPKPFSLTQLIESVVRQL 762 >gi|254446241|ref|ZP_05059717.1| Sigma-54 interaction domain family [Verrucomicrobiae bacterium DG1235] gi|198260549|gb|EDY84857.1| Sigma-54 interaction domain family [Verrucomicrobiae bacterium DG1235] Length = 406 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +D + + L + GY +G A K+REE + ++LTDI M MDG+ Sbjct: 2 QSILIVDDLESIHEMLDAVIQPIGYNTAFATDGEIALQKIREEHYDIVLTDINMKPMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 L + E DP+ V+ ++G+A + NA K K+ L+KPF + L+ + R Sbjct: 62 ALLAQIKEADPNAIVIMMSGYANI-----ENATKALKLGAFDYLTKPFKVDQLMASIER 115 >gi|251795697|ref|YP_003010428.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543323|gb|ACT00342.1| two component transcriptional regulator, AraC family [Paenibacillus sp. JDR-2] Length = 405 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+A+D+ +R+ L + K G EVVS NG A++ E +++TDIVMPEMD Sbjct: 8 KVLIADDESIVRKGLRSTVPWEKYGMEVVSDAPNGRKAWEAFLEHRPQVVITDIVMPEMD 67 Query: 61 GIELARRATELDPDLKVMFIT 81 GIEL+R+ E PD K++ ++ Sbjct: 68 GIELSRKVKEAAPDTKIILLS 88 >gi|154687413|ref|YP_001422574.1| CssR [Bacillus amyloliquefaciens FZB42] gi|154353264|gb|ABS75343.1| CssR [Bacillus amyloliquefaciens FZB42] Length = 225 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 11/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED+D++ L K L G+ + S G A +++ P L + DI++P+ D Sbjct: 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKQMQPSP-HLWILDIMLPDTD 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G L + E DPD+ V+FI+ A + L SN ++KPF R+L+ V Sbjct: 60 GYTLIKEIKEKDPDVPVIFISARDADIDRVLGLELGSN-----DYIAKPFLPRELIIRVQ 114 Query: 116 RLLTI 120 +LL + Sbjct: 115 KLLEL 119 >gi|323698784|ref|ZP_08110696.1| response regulator receiver protein [Desulfovibrio sp. ND132] gi|323458716|gb|EGB14581.1| response regulator receiver protein [Desulfovibrio desulfuricans ND132] Length = 129 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + + L AL K GYEV S A A ++RE F +++TD+ M +DG++ Sbjct: 9 ILILDDEPIVSKRLQPALEKRGYEVESFYESAKAMARIRERTFDIVVTDLKMEGVDGMQF 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L P +V+ ITGFA + +S L+KPF L + + EV R Sbjct: 69 LAEVKTLSPRTEVIVITGFATMDTAKESMRKGVFDFLAKPFKLGE-IQEVIR 119 >gi|312889259|ref|ZP_07748813.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311298136|gb|EFQ75251.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 228 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ ILLAEDD D L + L AGY+V NGA A + E + + D++MP MD Sbjct: 1 MNKHILLAEDDPDFGGILKQYLELAGYQVSWKMNGAEALTFFKTESADICVLDVMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G LA + T + P + +F+T + L D + KPF + +LV Sbjct: 61 GFTLAEKITGIHPGIPFIFLTARNQKEDRLKGLGLGADD-------YVVKPFEVEELVLR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 LKNIL 118 >gi|302039215|ref|YP_003799537.1| sigma-54 dependent response regulator [Candidatus Nitrospira defluvii] gi|300607279|emb|CBK43612.1| Sigma-54 dependent response regulator [Candidatus Nitrospira defluvii] Length = 459 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD DMR L L G++ +G A ++ EE ++++LTD+ M M G EL Sbjct: 8 VLVVDDDADMRSLLCDVLQGRGHQCTGVGSGDDALQQLSEEDYAVVLTDLRMKGMLGTEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PD+ V+ +T F +V ++ + L+KP +LV V R + Sbjct: 68 LAEVKQRYPDIGVILMTAFGSVETAVEAIRHGASDYLTKPVKTEELVRVVERAI 121 >gi|297570383|ref|YP_003691727.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296926298|gb|ADH87108.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 456 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD MR+ L L AG+ C +G A ++ F+++LTD+ MP GIE+ Sbjct: 8 ILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMPHFSGIEI 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +A +PD V+ +TG V ++ + KPF +L+ V R Sbjct: 68 LEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQR 119 >gi|330959155|gb|EGH59415.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 710 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D+ +R + + L G+ V+ G+ A ++ + LL+TD+ +P M Sbjct: 589 DETILVVDDEPAVRLLIAELLEDLGHVVLQAEKGSDALAILQSKAAIDLLITDVGLPGGM 648 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A A ++ PDLKV+F+TG+A A+ VL KPF + +L++ V LL Sbjct: 649 NGRQVADAARDVRPDLKVLFVTGYAENAVLAHDTLEPGMHVLPKPFAIAELISRVTELL 707 >gi|323700355|ref|ZP_08112267.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. ND132] gi|323460287|gb|EGB16152.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio desulfuricans ND132] Length = 461 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD + L++AL GY V + + K F L+L DI +P M Sbjct: 1 MAEKILVVDDDRAFQGMLVEALADKGYVVETAASAEEGIKKAGAGRFDLILHDIQLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E R E+ P + V+ +TG+ + + KPF LR++ V R + Sbjct: 61 GLEALRHLAEVSPGVDVIVMTGYGSKETGVTAMQQGAYDYFEKPFSLREMEVVVGRAM 118 >gi|241888541|ref|ZP_04775849.1| response regulator SaeR [Gemella haemolysans ATCC 10379] gi|241864808|gb|EER69182.1| response regulator SaeR [Gemella haemolysans ATCC 10379] Length = 229 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ ++ + L + GY++ N+G A +K + +SL++TDI+MP MD Sbjct: 1 MMNKILLVDDEIEITEINKRYLEQGGYDIDIANDGKEALEKYKRNKYSLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L LD + +FIT A+++ D + KPF R+LV Sbjct: 61 GYDLISEVQYLDTEQPFLFITAKTTEPDKIYALSMGADD-------YIVKPFSPRELVLR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VRNIL 118 >gi|256378007|ref|YP_003101667.1| multi-sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255922310|gb|ACU37821.1| multi-sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 1370 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++A+D+ DMR +L + L AGY V + +G +A ++VR L++TD++MP +DG+ Sbjct: 609 RVVVADDNADMREYLTRLLRSAGYRVRAVADGRAALEEVRARTPDLVVTDVMMPRLDGLG 668 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + + V+ ++ A + + A L KPF DL+ V Sbjct: 669 LVAALRADQRTAGVPVVLLSARAGQEASIEGLAAGADDYLVKPFAAADLLARV 721 >gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii 3937] gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii 3937] Length = 951 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 53/107 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D RR L LG GY+V++ N+G A D + + P ++LTD+ MP MDG Sbjct: 826 RLLVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVLAKNPVDIILTDVNMPNMDGYR 885 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R E++ L V+ +T A LSKP L L Sbjct: 886 FTQRLREMEQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLDTL 932 >gi|271501297|ref|YP_003334322.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270344852|gb|ACZ77617.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 224 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 64/115 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KALG+AG+ V +G +A +++E ++L++ D+ +P MDG+ Sbjct: 2 RLLLVEDHPELAHWLKKALGEAGFAVDLVGDGVAADHLLQQEAYTLVVLDVSLPRMDGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + +L V+ +T A+VA L+KPF L +L + LL Sbjct: 62 LLARLRKRGQNLPVLLLTARASVADRVKGLNLGADDYLTKPFELAELEARLRALL 116 >gi|312886839|ref|ZP_07746445.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300666|gb|EFQ77729.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1365 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I+LAED++++R F++ +L GYEV + NG A+++ + L+++D++MP M+G+EL Sbjct: 1117 IILAEDNEELRNFIVDSL--PGYEVAAYENGHVAFEQAITQIPDLVISDVMMPVMNGLEL 1174 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + E + V+ +T A + L+KPF ++ L V LLT Sbjct: 1175 CRKIKTDERTSHIPVILLTALATHIHQVNGLQTGADVYLTKPFSIKLLELNVQNLLT 1231 >gi|303248911|ref|ZP_07335159.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] gi|302489710|gb|EFL49645.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] Length = 138 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ + + L A KAGY+V + + +A + E P +++TD+ M +DG+ Sbjct: 13 RRILILDDEPIVVKRLKPAFQKAGYDVETFTDSDAALARFTESPADIVITDLKMDGLDGM 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +A L P + + ITGFA + +S ++KPF L D+++ V RL T Sbjct: 73 GFLEKAKALSPAVGCIVITGFATLETAKESFHKGAFDFVAKPFKLADILDVVRRLET 129 >gi|253577366|ref|ZP_04854683.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843266|gb|EES71297.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 148 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 64/120 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D + +R L++ GY+ NG A + VR + L+L D+ +P MDG+ Sbjct: 27 KKVLIVDDQNGIRILLMEVFSSEGYKTFQAANGKMALEIVRSDSPDLVLLDMKIPGMDGL 86 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ + E++P++KV+ +T + + + ++ +KPF + ++ VN L N Sbjct: 87 EILKHIKEVNPEIKVIMMTAYGELDMIKEATDLGALMHFTKPFDIDEMRAAVNLQLKSGN 146 >gi|269838450|ref|YP_003320678.1| response regulator receiver protein [Sphaerobacter thermophilus DSM 20745] gi|269787713|gb|ACZ39856.1| response regulator receiver protein [Sphaerobacter thermophilus DSM 20745] Length = 127 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +DD + + + L GY +C NG A D + E L+L D+ MP+MDG E Sbjct: 7 SILVVDDDPAIVDIITQVLAAEGYVTRACRNGLEALDVLNEWRPDLILLDLWMPKMDGWE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 RR LD V + A L + A + KPF L DL++ V+ +LT N Sbjct: 67 FRRRQLTLDVARDVPVVLLSAGGRLEEHAQTLDAAAAIPKPFDLTDLLSVVDAVLTHPN 125 >gi|223557938|gb|ACM90945.1| response regulator receiver protein [uncultured bacterium URE12] Length = 123 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 11/121 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +DD D L L AGY+ V C NG +A DK+R E ++ D+++P MD Sbjct: 1 MADKVLVVDDDADTCALLQFTLENAGYKAVICPNGRNAIDKIRLEKPQAVILDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAP------KNAKVLSKPFHLRDLVNEV 114 GI + ++ E D +LK + I V+ + DS AK LSKPF+ DL+ E+ Sbjct: 61 GITITKKMNE-DEELKKIPII----VSSSMDSAQGLLQGLFNVAKFLSKPFNPEDLLEEL 115 Query: 115 N 115 + Sbjct: 116 H 116 >gi|196231318|ref|ZP_03130177.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196224654|gb|EDY19165.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 576 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L +D+ + + L + GY V+ + +A +++ F L++TD+ MP G Sbjct: 445 GERVLFVDDEPVLTMLGGRFLTRLGYSPVTQTDPRAALALFKDQDFDLVITDLTMPHFSG 504 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE AR EL PD +V+ TG++A ++ +++L KP+ + L N + R+L Sbjct: 505 IEFARCIWELRPDTRVILTTGYSATLDTKRASELGFSELLLKPYTVHGLGNALQRVL 561 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ DD ++++AL + G+EV S ++G A + L+++DI+MP MDG +L Sbjct: 3 ILSVDDKSENLYMLEALLRGYGHEVHSASDGQQALQLTGLCEYDLIISDILMPRMDGFQL 62 Query: 65 AR 66 R Sbjct: 63 CR 64 >gi|209549257|ref|YP_002281174.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535013|gb|ACI54948.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1036 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMP-EMD 60 + +L+ EDDD +R + L GY V+ + SA+ + + LL TD+VMP M Sbjct: 775 ETVLVVEDDDGVRETSVALLADLGYHVLKARDAQSAFTILESGVHADLLFTDVVMPGPMR 834 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+A L P++ V+F +G+ ++ ++LSKP+ L +V +L Sbjct: 835 STELARKAKALYPEIAVLFTSGYTENSIVHGGRLDAGVELLSKPYTREALARKVRHVL 892 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 5/115 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + L + G+ V +G A + EP +LLTDI +P M G + Sbjct: 923 QILVVEDEPLILMATVDMLTETGHLVREAGSGEQALVILENEPVDILLTDIGLPGMSGSD 982 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAP-KNAKVLSKPFHLRDLVNEVNRL 117 LA+ + P ++++F +G A N + A ++A LSKPF L +++L Sbjct: 983 LAQNVRKRWPHIQIVFASG----ATNGSTQAGIEDALHLSKPFTAEALAKVLSQL 1033 >gi|307295727|ref|ZP_07575560.1| integral membrane sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306878383|gb|EFN09604.1| integral membrane sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 565 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 5/110 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EMD 60 +ILL EDDD + + L GYE +NG A ++ R+ FSL+L+D++MP E+ Sbjct: 443 HRILLVEDDDTVADTVGGMLTALGYETERVDNGDEALRRLERKGDFSLILSDMIMPGEVS 502 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ELA + +L P L M +TG++A A S A + +L+KPF ++DL Sbjct: 503 GMELALKIRQLWPHLGTMLMTGYSAAAA---SAAKEGVPLLAKPFTIQDL 549 >gi|322421775|ref|YP_004200998.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320128162|gb|ADW15722.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 667 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + +L+ ED+ D+R L + L AGY V+ +GA A K P L+L D++MP M Sbjct: 547 TETVLVVEDEADLRILLEQILSGAGYRVIVAEDGAVAVQKFARFPGEIGLVLMDMIMPGM 606 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E ELDP +V++ +G+ + + ++L KP +L+ +V +L Sbjct: 607 SGKEACSAIRELDPGARVLYTSGYTMDIIRSRDLLEEGTELLMKPVRPVELLRKVREML 665 >gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+++++ L L GYEV + +NG +A V+ E F L++ DI++PEMDGI + Sbjct: 9 ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIMLPEMDGIAV 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + ++ ++F++ + A ++KPF+L +L+ V +L+ +KN Sbjct: 69 CENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLI-VKN 125 >gi|86157702|ref|YP_464487.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774213|gb|ABC81050.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 449 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R L++ L A +EV + A+A + E +LTD+ MP +DGI+ Sbjct: 3 RVLVVDDDPVAQRVLVRLLSPA-HEVRAFGEPAAALRHLAEHGADAVLTDLRMPGLDGIQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RA ELDP++ V ITG +++ ++ L+KPF D+V ++R L Sbjct: 62 VLARARELDPEVLVFVITGHSSLPSAVEAIKRGAEDYLAKPFEPEDVVLRLDRAL 116 >gi|3758881|emb|CAA09872.1| hypothetical protein [Pseudomonas stutzeri] Length = 175 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 +L+ ED+ + L L GY V++ + A A++ + +P LL++D +P + G+ Sbjct: 58 VLIVEDEPHILDLLSDFLADEGYRVLAAESSAKAFEILATKPQLDLLISDFRLPGNVSGV 117 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +A A +L PDLKV+FI+G+ S + VL+KPF L L ++ +LL Sbjct: 118 MIAEPALKLRPDLKVIFISGYPIEIYESGSPIVRTVPVLAKPFSLDSLHGQIQQLLA 174 >gi|171318480|ref|ZP_02907634.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171096346|gb|EDT41249.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 589 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EMD 60 + IL+ EDD ++R ++ L + GY+V++ ++G +A + + LL TD++MP + Sbjct: 465 ETILVVEDDAEVRLTVVDMLAQLGYKVLTASDGEAALQMLDCDTQIDLLFTDVIMPGRIK 524 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELAR AT+ P L V+F +G+ + +L KP+ +L + +L Sbjct: 525 GGELARHATQRTPPLPVLFTSGYTRDEIFHSGRLDPGVMLLGKPYRRDELATRIRDML 582 >gi|163856677|ref|YP_001630975.1| two-component hyrid sensor and regulator [Bordetella petrii DSM 12804] gi|163260405|emb|CAP42707.1| two-component hyrid sensor and regulator [Bordetella petrii] Length = 1018 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 I+L EDD ++R + + L V+ +G + +++ + LLLTD+ +P ++G + Sbjct: 874 IVLVEDDTNVREMVRECLAGVSLRVLEAADGEAGARLLKDAQRVDLLLTDVGLPGLNGRQ 933 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA A E+ P L+V+F+TG+A ++ + +V+ KPF L++ + ++L+ Sbjct: 934 LADVAREIRPGLRVLFMTGYAENVVDGSEFQGEGMEVILKPFSPGSLIDRIRKMLS 989 >gi|209966017|ref|YP_002298932.1| sensory box histidine kinase [Rhodospirillum centenum SW] gi|209959483|gb|ACJ00120.1| sensory box histidine kinase [Rhodospirillum centenum SW] Length = 843 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-----FSLLLTDIVMPE 58 ++LL ED+ +R + L GY V C + +A +++ P F LLLTDI +P Sbjct: 718 RVLLVEDEALVRLSTVALLRDLGYRVEDCASAEAALERLAGSPDGNGEFDLLLTDIGLPG 777 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG LA RA EL P + V+ +TG+ S+ L KPF + L V R L Sbjct: 778 MDGRTLASRAAELRPGMAVVLMTGYDRTG----SDGGGRWAHLDKPFAPQHLAETVARAL 833 >gi|39996219|ref|NP_952170.1| response regulator [Geobacter sulfurreducens PCA] gi|39982984|gb|AAR34443.1| response regulator [Geobacter sulfurreducens PCA] gi|298505231|gb|ADI83954.1| response regulator, putative [Geobacter sulfurreducens KN400] Length = 127 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 62/110 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +KIL+ +D+++ R L K L + G+EV S +NG A + +++ ++++TDI MPEM+ Sbjct: 5 IKKKILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQREVNVIVTDINMPEMN 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GI R + P V+ IT + V ++ + ++KP L +L Sbjct: 65 GITFLRELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDEL 114 >gi|258591620|emb|CBE67921.1| putative Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG) [NC10 bacterium 'Dutch sediment'] Length = 487 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D++ +R L KAL + GY+VV +G + + L+L DI MP +G Sbjct: 4 TRHILVVDDEESIRWALRKALEREGYQVVLAADGVEGLARATDPSIDLVLMDIKMPGAEG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E R E P+L V+ +T F + + ++KPF +L V R+ I+ Sbjct: 64 LETLSRIKETRPELPVIIMTAFGTLQAAVQAMKRGAYDYITKPFDFGELTILVQRVFEIR 123 Query: 122 N 122 Sbjct: 124 E 124 >gi|332703305|ref|ZP_08423393.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio africanus str. Walvis Bay] gi|332553454|gb|EGJ50498.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio africanus str. Walvis Bay] Length = 454 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +ILL ED++ R L K G++V +G SA + F L++TD+ +P+MD Sbjct: 2 IEARILLVEDEEIARSNYEYVLAKEGHDVTGVGDGQSALAALERSTFDLVVTDLRLPDMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+++ ++A E P+ +V+ IT + V + ++ L KP L +L V + L Sbjct: 62 GLDVLQKAKERLPEAEVLLITAYGTVPMAVEAMRLGAYHFLQKPIGLDELRVTVKKAL 119 >gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 237 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +DD +R L +AL GY+V ++GA A + + P L+++D++MPEMDGI Sbjct: 2 KKILVVDDDRTLRITLTRALENMGYQVQQVSSGAEALEACVKNPPDLVVSDVMMPEMDGI 61 Query: 63 ELAR--RATELDPDLKVMFITG 82 E R RAT + +F++G Sbjct: 62 EFCRRLRATPSGQLMPFIFLSG 83 >gi|114778459|ref|ZP_01453304.1| response regulator [Mariprofundus ferrooxydans PV-1] gi|114551303|gb|EAU53861.1| response regulator [Mariprofundus ferrooxydans PV-1] Length = 126 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R+ L + L AGYEV+ NG +P L++TDI MPE +GI Sbjct: 3 RILIIDDEALFRKMLRQMLEMAGYEVLEAANGEHGIAMFTAQPTDLVITDIFMPEKEGIS 62 Query: 64 LARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLT 119 + P+LK+M +T G+ A K VL KPF ++L++ V +LLT Sbjct: 63 TIQDLRRDYPNLKIMAVTGGGYKRRGFEYLQFADKVGADCVLRKPFERQELLDAVQQLLT 122 >gi|313498519|gb|ADR59885.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 553 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPE-MDG 61 K++L ED+ +R +++ L G+EV + +G A+ ++E P LL+TD+ +P +DG Sbjct: 430 KVMLVEDEPALRLVMLEVLIDQGHEVQAFEDGRQAFKALQEAPAPDLLITDVCLPGGIDG 489 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ + P V+ ITG A + + ++L+KPF L+ L + RLL Sbjct: 490 HRLAQACRSIAPHAAVLLITGPDAAHSTAKAWPDQRTELLAKPFDLQTLAQALERLL 546 >gi|58337702|ref|YP_194287.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227904348|ref|ZP_04022153.1| two component response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255019|gb|AAV43256.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227867996|gb|EEJ75417.1| two component response regulator [Lactobacillus acidophilus ATCC 4796] Length = 221 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ + R L A+ KAGYEV +NG A + ++ + +++ DI+MP MDGI Sbjct: 2 KILVAEDEPQLLRVLTVAMQKAGYEVDPVDNGLKAVEHAKKNCYDVIILDIMMPVMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ E ++ +T A + DS A L+KPF L++L+ Sbjct: 62 ALKQIRESGDKTYILMLTAKAEIDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|11499482|ref|NP_070723.1| response regulator [Archaeoglobus fulgidus DSM 4304] gi|2648641|gb|AAB89351.1| response regulator [Archaeoglobus fulgidus DSM 4304] Length = 117 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 3/115 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ +D+ MR L K + K Y+V+ +NG A + REE ++L D++MP M+GIE Sbjct: 3 KVMVVDDEIAMREIL-KIMLK-DYKVIEASNGREAVELYREERPDIVLMDVMMPLMNGIE 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++DPD K++ IT +A+ A + +L KPF +++V + R+L Sbjct: 61 ATSEIKKIDPDAKIVAITAYASSKGEKVIEAGADY-ILKKPFTRKEVVELIKRIL 114 >gi|296330848|ref|ZP_06873323.1| regulator of chemotaxis and motility [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674366|ref|YP_003866038.1| regulator of chemotaxis and motility [Bacillus subtilis subsp. spizizenii str. W23] gi|296151853|gb|EFG92727.1| regulator of chemotaxis and motility [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412610|gb|ADM37729.1| regulator of chemotaxis and motility [Bacillus subtilis subsp. spizizenii str. W23] Length = 120 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G+EVV+ NGA A +K +E L+ DI MPEM Sbjct: 1 MAHRILIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++D +++ + ++ D+ + KPF ++ +N+ L+ Sbjct: 61 DGISALKEIKQIDAQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS 120 >gi|160888763|ref|ZP_02069766.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492] gi|156861662|gb|EDO55093.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492] Length = 1390 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +QKIL+ ED+D++R +L + L + Y + C+NG A V+E +L+++DI+MPEM G Sbjct: 1126 HQKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRG 1184 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNR 116 EL L D++ I ALN D N + + + KPF++ L + Sbjct: 1185 DELCHI---LKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIAN 1241 Query: 117 LLT 119 LLT Sbjct: 1242 LLT 1244 >gi|319790341|ref|YP_004151974.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermovibrio ammonificans HB-1] gi|317114843|gb|ADU97333.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermovibrio ammonificans HB-1] Length = 442 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ +R L L + GY+V + A KV E F L+L D+ +P+ G+E Sbjct: 2 KVLILEDEVSLREILKIVLEEFGYQVEEAGTLSEAVKKVEESYFDLILVDLRLPDGSGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L RR PD +V+ IT FA+ ++ + KPF + +L Sbjct: 62 LVRRVKGETPDTEVIIITAFASTQTVKEAFELGVYDYVEKPFQIDEL 108 >gi|294140233|ref|YP_003556211.1| response regulator [Shewanella violacea DSS12] gi|293326702|dbj|BAJ01433.1| response regulator [Shewanella violacea DSS12] Length = 367 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD RR + L G +V+ N+G DK ++ F ++L D+ MP M G+++ Sbjct: 8 ILLVEDDPVFRRIVASFLTSKGAKVIEANDGEQGLDKFKQFTFDIVLADLSMPNMGGLDM 67 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + +EL+PD+ + I+G +A Sbjct: 68 LKMMSELNPDIPSIVISGNQVIA 90 >gi|260459119|ref|ZP_05807374.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259034673|gb|EEW35929.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 858 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 + +LL ED+D +R ++AL GY V ++G A + + ++++D+VMPEM Sbjct: 738 SATVLLVEDEDAVRMGGMRALTSRGYTVHEASSGVEALEVFEALGGKVDIVVSDVVMPEM 797 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG L + PD+K +F++G+A A + A L KPF L+ L V +L Sbjct: 798 DGPTLLGELRKRQPDIKFVFVSGYAEDAFARNLPADAQFGFLPKPFSLKQLATIVKDVL 856 >gi|104773931|ref|YP_618911.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423012|emb|CAI97698.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 222 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++ Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + +M +T + + L+KPF L++L+ Sbjct: 62 AVKEIRSTGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELL 109 >gi|320105128|ref|YP_004180719.1| response regulator receiver modulated GAF sensor protein [Isosphaera pallida ATCC 43644] gi|319752410|gb|ADV64170.1| response regulator receiver modulated GAF sensor protein [Isosphaera pallida ATCC 43644] Length = 690 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 50/82 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+A+ D +R + + LG+ G V + +G +A + R P+SL L DI +P+M Sbjct: 535 RTILVADAQDTIRVRVHEILGQLGAVVETVADGQTAVAQARHSPYSLALVDIRLPDMKAY 594 Query: 63 ELARRATELDPDLKVMFITGFA 84 ++ RR E+ PDL V+FITGF Sbjct: 595 DVFRRLREVQPDLPVIFITGFG 616 >gi|194363901|ref|YP_002026511.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Stenotrophomonas maltophilia R551-3] gi|194346705|gb|ACF49828.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Stenotrophomonas maltophilia R551-3] Length = 482 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q+I + +DD +R L AL +AGY+VV ++ A A + E P +LL TD+ MP DG Sbjct: 9 QRIWVVDDDRAVRFVLCTALREAGYQVVDFDSAAPALQALSEGPPPALLFTDVRMPGDDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L + + P L V+ ++ + VA + + LSKPF L D V R+L Sbjct: 69 LVLLDKLKAVLPQLPVVVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAQRVL 125 >gi|92117382|ref|YP_577111.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Nitrobacter hamburgensis X14] gi|91800276|gb|ABE62651.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Nitrobacter hamburgensis X14] Length = 480 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV N A+ + V + +++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDIVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++LV V R L Sbjct: 66 LPRIKKMRPNLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELVAIVGRAL 119 >gi|83310209|ref|YP_420473.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945050|dbj|BAE49914.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 976 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLAED+ ++ I L ++G++V NNGA A V+E + ++L D+ MPEMDG+E Sbjct: 712 KVLLAEDNPVNQKVAILILERSGHKVTGVNNGAQALRAVQEGDYDIVLMDMQMPEMDGLE 771 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 RR L+ + + I A AL + A + ++KPF + L +E+ R+L Sbjct: 772 STRRIRALEAPVAQIPILALTANALAAEFERCMEAGMDGFVTKPFQIELLASEIARVLAE 831 Query: 121 KN 122 K Sbjct: 832 KT 833 >gi|116513940|ref|YP_812846.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093255|gb|ABJ58408.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 222 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++ Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + +M +T + + L+KPF L++L+ Sbjct: 62 AVKEIRSTGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELL 109 >gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 68/115 (59%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRLQQ-EKNTYIMMMTARDSI-MDIVAGLDRGADDYIVKPFAIEELLARI 113 >gi|297380545|gb|ADI35432.1| Response regulator arlR [Helicobacter pylori v225d] Length = 213 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVSCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|261880416|ref|ZP_06006843.1| DNA-binding response regulator [Prevotella bergensis DSM 17361] gi|270332884|gb|EFA43670.1| DNA-binding response regulator [Prevotella bergensis DSM 17361] Length = 232 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GY V C +G + Y + ++ F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGTLLCEYLIAKGYNAVLCPDGEAGYKEFTKDKFDMCVLDVMMPKKDGFS 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ +++ + ++F+T + ++KPF + +LV V +L Sbjct: 66 LAQDIRQINSQIPIIFLTARVQKEDVLEGFDKGADDYITKPFSMEELVKRVEAIL 120 >gi|188528154|ref|YP_001910841.1| putative transcriptional regulator [Helicobacter pylori Shi470] gi|188144394|gb|ACD48811.1| putative transcriptional regulator [Helicobacter pylori Shi470] Length = 213 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVSCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|186685939|ref|YP_001869135.1| response regulator receiver modulated PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] gi|186468391|gb|ACC84192.1| response regulator receiver modulated PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] Length = 294 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L + GYE+ NG +A + P L+L DI+MPEM+G E+ Sbjct: 37 ILVVDDTPDNLRLLSAMLTQLGYEIRRVINGPTALKTAQAAPPDLILLDIMMPEMNGYEV 96 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +A+E+ D+ V+FI+ V + A ++KPF ++ V LTI+ Sbjct: 97 CQHLKASEITRDIPVIFISALDEVFDKVKAFAVGGVDYITKPFSEEEVFARVENNLTIR 155 >gi|320160584|ref|YP_004173808.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994437|dbj|BAJ63208.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 534 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD + + + L +A ++V++ + A + LLLTDI MP MDG EL Sbjct: 6 ILVVDDDRSIVKLCQRLLERASFQVLASTDPFEALKILEVHRVDLLLTDIRMPVMDGFEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLLT 119 R L PDL V+ +TGF V + ++ KPF + LV V R+LT Sbjct: 66 IERGKALQPDLAVLVMTGFGTVDTAIQALYRGVDGLILKPFENTAGLVEAVQRVLT 121 >gi|311695219|gb|ADP98092.1| two component, sigma54 specific, transcriptional regulator, Fis family [marine bacterium HP15] Length = 488 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+R L+ L A + V N + A +++ E P ++++D+ MP + G + Sbjct: 5 QILIVEDDHDLREALVTTLELAKFRVREACNASEALERLAEAPVDMVVSDVNMPGLSGHQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L L P L +M IT + ++ + L KPF R LV+ V++++ Sbjct: 65 LLAEVQRLYPGLPMMLITAYGQISDAVSAMQAGAIDYLVKPFEPRFLVDAVSKVV 119 >gi|299133858|ref|ZP_07027052.1| two component, sigma54 specific, transcriptional regulator, Fis family [Afipia sp. 1NLS2] gi|298591694|gb|EFI51895.1| two component, sigma54 specific, transcriptional regulator, Fis family [Afipia sp. 1NLS2] Length = 481 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 64/114 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGYEV +N A+ + V + L++TD+VMP+ + +L Sbjct: 6 ILVADDDTAIRTVLNQALIRAGYEVRLTSNAATLWRWVNQGEGDLVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKLRPNLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELIAIVGRAL 119 >gi|197117909|ref|YP_002138336.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087269|gb|ACH38540.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 461 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 62/116 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++I++ ++++ + R + L GY V + A + + + LL+TDI MP MDG+ Sbjct: 5 KRIMVVDNEEGLCRMMEAVLSDNGYAVTAHTRSFEAAESFQAGQWDLLVTDIKMPGMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ + DP L V+ +T +A V ++ + +L+KPF +L+ V L Sbjct: 65 ELLQKVKQKDPALPVIMVTAYATVEMSIQALRKGAYDMLTKPFEPEELLYRVKNAL 120 >gi|20141026|sp|Q9APD9|ZRAR_KLEOX RecName: Full=Transcriptional regulatory protein zraR gi|12584125|gb|AAG59807.1|AF305914_2 HydG [Klebsiella oxytoca] Length = 443 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 46/82 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V NNG A +KVRE+ F L+L DI M EMDGIE Sbjct: 8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIET 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + +P + V+ +T +++V Sbjct: 68 LKEIKTFNPSIPVLIMTAYSSV 89 >gi|315613471|ref|ZP_07888379.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315314467|gb|EFU62511.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 251 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A+D ++++ ++LTDI MP Sbjct: 7 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWDLIQQQVPDIILTDINMP 66 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LAR E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 67 QLNGIQLARLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 119 >gi|308183474|ref|YP_003927601.1| putative transcriptional regulator [Helicobacter pylori PeCan4] gi|308065659|gb|ADO07551.1| putative transcriptional regulator [Helicobacter pylori PeCan4] Length = 213 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVSCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|222100859|ref|YP_002535427.1| Chemotaxis protein cheY [Thermotoga neapolitana DSM 4359] gi|221573249|gb|ACM24061.1| Chemotaxis protein cheY [Thermotoga neapolitana DSM 4359] Length = 120 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR L + KAGYEVV NG A +K +E ++ DI MPEM Sbjct: 1 MAKRVLIVDDAAFMRMMLKDIITKAGYEVVGEATNGREAVEKYKELKPDIVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +GI+ + ++DP+ K++ + A+ ++ + KPF +V +N++ Sbjct: 61 NGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 >gi|78048310|ref|YP_364485.1| histidine kinase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036740|emb|CAJ24433.1| sensory box histidine kinase/response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 540 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY V+S ++G A + + + P L TD++MP M Sbjct: 415 NETILVVEDKQDVAVVARMFLENAGYRVLSASSGREAMEILEKTPQVDALFTDLIMPGGM 474 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V+ KP+ ++L+ + LL Sbjct: 475 NGVMLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVDKPYTQKELLKRIRMLL 533 >gi|289668671|ref|ZP_06489746.1| histidine kinase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 541 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY ++S ++G A + + + P L TD++MP M Sbjct: 416 NETILVVEDKQDVAVVARMFLENAGYRILSASSGREAVEVLEKNPEVDALFTDLIMPGGM 475 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V++KP+ ++L+ + LL Sbjct: 476 NGVMLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 534 >gi|288919106|ref|ZP_06413446.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f] gi|288349546|gb|EFC83783.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f] Length = 778 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 ILLAEDDD +R F + L AGY VVS +G +A D R LLLTD+++P +G + Sbjct: 595 ILLAEDDDAVRNFAERVLRAAGYLVVSAADGRTAIDLARGLTSIDLLLTDVILPGRNGRQ 654 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 LA + P L V+F + ++ L + + L KPF Sbjct: 655 LAEDLIRMFPGLPVVFTSAYSRGML-AEGGTTLDYAYLPKPF 695 >gi|196234231|ref|ZP_03133062.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196221690|gb|EDY16229.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 562 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 57/109 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ +R + L + ++V + NG +K +E F L++TD MPEM+G + Sbjct: 446 RILVVEDEPLVREVISVYLAEDQHDVTTAENGRVGLEKFKEGTFDLVMTDRAMPEMNGDQ 505 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 LA +L P+ ++ +TGF + V+SKPF L L N Sbjct: 506 LAIEIKKLRPEQPIILLTGFGDLMAGSGEQPQGVDLVVSKPFTLATLRN 554 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAG---YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +LL ED+++ FL + L + +++ + + S +++++ L+L D+ +P+ DG Sbjct: 8 VLLIEDNEEHITFLRQLLATSAAGQFDLHTAGSVRSGIERLKDGGIELILLDLTLPDSDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVAL 88 +E R E PDL ++ ++G + VAL Sbjct: 68 LETFLRVIEAAPDLPLIVLSGLSDVAL 94 >gi|116748449|ref|YP_845136.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697513|gb|ABK16701.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 557 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEM 59 ++ ILL ED+ ++ + + L + GY V+ +G SA + P LL+TD+VMP M Sbjct: 435 SETILLVEDEALLKTMIGQTLRRHGYTVLEAADGESALKVEAGHAGPIHLLVTDVVMPGM 494 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA++ P+ V++ITG+A + +L KPF L ++ LL Sbjct: 495 NGHQLAQKLAAARPETTVLYITGYADDPTVRRELSDATRAILQKPFTSEVLTQKIRGLL 553 >gi|302342973|ref|YP_003807502.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301639586|gb|ADK84908.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfarculus baarsii DSM 2075] Length = 456 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 Q+ +L DD+ R +++A L AGY V+ +G +A ++ EP L+L D VMP MD Sbjct: 4 RQQTVLVVDDERGHRLMLRAHLEDAGYRVIDAADGEAALVQLESEPVELVLMDQVMPRMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ +R P+L V+ +T F ++ + L+KP + +++ +V R L Sbjct: 64 GLSALKRVKAQRPELPVLMMTAFGSIDNAVTALKEGADDYLTKPLDVEEVLIKVGRRL 121 >gi|325298760|ref|YP_004258677.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] gi|324318313|gb|ADY36204.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] Length = 230 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 60/111 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL A+DD FL + L KAGYEVV +G A ++ R L+L DI MPE++G E Sbjct: 7 KILFADDDATYSLFLKRFLEKAGYEVVHVPDGKQALEQFRLCRPDLVLLDINMPEINGFE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +AR+ D + + F++ ++ + K + KPF+ +L+ ++ Sbjct: 67 VARQIRSWDKKVLLFFLSDRTEISDRLKGFSLKGNDYIPKPFYPEELLAKI 117 >gi|320352609|ref|YP_004193948.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121111|gb|ADW16657.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 455 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D +D R + L AGY V +C + A A V F +++TD+ MP+ G+E Sbjct: 13 RILVVDDAEDAREVIHTHLEDAGYMVRTCASVAEALLAVESSVFDIIITDLRMPKASGLE 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + D++VM ITG+ ++ ++ L KPF R+L+ V ++ Sbjct: 73 LIQHVRNTLEDIEVMMITGYPSIEGAIEAIKTGAEHYLPKPFTERELLEAVRAIV 127 >gi|258512743|ref|YP_003186177.1| response regulator receiver protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479469|gb|ACV59788.1| response regulator receiver protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 125 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +D +R L + L + GYEV +NG SA V E L+L D+ +P MD Sbjct: 1 MAYKVLVVDDQFGIRVLLHEVLQREGYEVFQASNGPSALSIVEREQPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R +L D KV+ +T + + L ++ +KPF + +L V L Sbjct: 61 GLEILRNLRKLGVDAKVIMMTAYGELDLIHEAMEMGAVAHFTKPFDIDELRRTVREHL 118 >gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 230 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D+ +R L ++L GYEVV +GA A + + +E +L++ D++MP+MDG+E Sbjct: 2 KILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ D A +A L KPF L +L+ V L Sbjct: 62 VCRTLRSTGDDRPILLLTARDGVS---DRVAGLDAGADDYLPKPFALEELLARVRSLF 116 >gi|289580810|ref|YP_003479276.1| response regulator receiver protein [Natrialba magadii ATCC 43099] gi|289530363|gb|ADD04714.1| response regulator receiver protein [Natrialba magadii ATCC 43099] Length = 121 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 10/122 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 ++L+AEDD+ + L+ L AGY+V+S NG ++ ++ +EP LL D++MP MDG Sbjct: 2 QVLVAEDDEHINEMLVYRLETAGYDVISFQNGDECWEYLKDTDEPPDALLLDVMMPGMDG 61 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 ++ RR E DP+ V+ ++G L D + V ++KPF ++V + R Sbjct: 62 FDVLRRLREYDFDPEPAVIIVSG---RGLEQDVLTGFDLGVDDYVTKPFSPSEVVARLRR 118 Query: 117 LL 118 +L Sbjct: 119 IL 120 >gi|166711622|ref|ZP_02242829.1| histidine kinase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 540 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY ++S ++G A + + + P L TD++MP M Sbjct: 415 NETILVVEDKQDVAVVARMFLENAGYRILSASSGREAVEVLEKNPAVDALFTDLIMPGGM 474 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V++KP+ ++L+ + LL Sbjct: 475 NGVVLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 533 >gi|156743607|ref|YP_001433736.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] gi|156234935|gb|ABU59718.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] Length = 127 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 N I+L ED+ D+ L + + GY++V+ + GA A ++ P L++TD MP M Sbjct: 8 NPAIVLVEDEPDILIILHRLMRDLTGGYDIVTVSGGAEALAQIALRPVPLVITDYNMPGM 67 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G++L E PD +V+ IT +A L + + L KPF L L V +L+ Sbjct: 68 NGLQLTAAIKETSPDTRVVLITAYATPELEKRAREQRVDYYLPKPFPLDRLEQIVRDVLS 127 >gi|148255611|ref|YP_001240196.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407784|gb|ABQ36290.1| putative sensor histidine kinase with a CHASE3 and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 754 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EM 59 ++ IL+ EDD +R F++ L GY +S G A V ++PF LL TD++MP + Sbjct: 625 HETILVVEDDPLVRSFVLAQLQSLGYTTLSAARGREALAIVDGDQPFELLFTDVIMPGGV 684 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA P ++V++ +G+ A+ A +L+KP+ +L V R L+ Sbjct: 685 SGRQLAEAVQAKRPSVRVLYTSGYTDNAILEHGQLLSEALLLTKPYRRAELAQMVRRALS 744 >gi|196230969|ref|ZP_03129829.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196224799|gb|EDY19309.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 203 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD + L L G+EVV NGA A++ EP ++++D +MP MDG+E Sbjct: 2 KILIAEDDPIAAKVLCLTLQNLGHEVVVATNGAEAWETFDAEPIRVVVSDWMMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLV 111 L R FI AA N D +A V L+KPF RD++ Sbjct: 62 LCGRIRNRAQTPYTYFILLTAAQTGNEDYLQAMDAGVDDFLTKPFD-RDII 111 >gi|94265275|ref|ZP_01289034.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] gi|94271665|ref|ZP_01291993.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] gi|93450381|gb|EAT01593.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] gi|93454256|gb|EAT04572.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] Length = 467 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 + +IL+ +D+ DM + + + L + A EVV + + + +R+ +LL DI MPE Sbjct: 2 VTTRILVVDDEPDMLQAMERILPREFADLEVVVRDRATAGLEVIRQPGADVLLCDIRMPE 61 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG+EL A E+DP L V+ +T + + + ++KPF + DLV +++ L Sbjct: 62 MDGLELLAAAKEIDPWLTVVMMTAYGGIETAVKAVKSGAYDFITKPFEIPDLVRVLHKAL 121 >gi|303245364|ref|ZP_07331648.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio fructosovorans JJ] gi|302493213|gb|EFL53075.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio fructosovorans JJ] Length = 1137 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL EDD+D R + + L + G+EV + GASA K+ +P F + +TD MP+++G Sbjct: 1013 RILFVEDDEDQRITIPRVLAQLGHEVSAHGGGASALAKLALDPQAFDVCITDYDMPDING 1072 Query: 62 IELARRATELDPDLKVMFITG 82 +ELA + + PDL V+ ++G Sbjct: 1073 LELASKIAAIRPDLPVILVSG 1093 >gi|289661717|ref|ZP_06483298.1| histidine kinase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 541 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY ++S ++G A + + + P L TD++MP M Sbjct: 416 NETILVVEDKQDVAVVARMFLENAGYRILSASSGREAVEVLEKNPEVDALFTDLIMPGGM 475 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V++KP+ ++L+ + LL Sbjct: 476 NGVMLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 534 >gi|253998594|ref|YP_003050657.1| putative Fis family two component sigma54 specific transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200666|ref|YP_004039324.1| Fis family two component sigma54 specific transcriptional regulator [Methylovorus sp. MP688] gi|253985273|gb|ACT50130.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Methylovorus sp. SIP3-4] gi|312439982|gb|ADQ84088.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Methylovorus sp. MP688] Length = 464 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL +DD D+ + L L AGY+VV+ NG A + +L+++D+ MP MDG Sbjct: 11 GRKILAVDDDPDILKLLEMRLVAAGYQVVTAANGEEALAHIGVSRPALVISDLRMPRMDG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + L + DP L V+ +T ++ D+ L+KPF + L+ +V L + Sbjct: 71 LALFDAIHQADPALPVILLTAHGSIPEAVDATRRGVFGFLTKPFDSKSLLQQVEAALRL 129 >gi|256426002|ref|YP_003126655.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256040910|gb|ACU64454.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 248 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILLAEDD + K L AGY VV C +G A K + + F L + D++MP+ DG Sbjct: 4 NVQILLAEDDYQYGSIIKKQLEAAGYAVVHCFDGEVALKKFQRDDFDLCILDVLMPKKDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ + + + ++FI+ A L KPF +R+L+ + L Sbjct: 64 FTLAQDIRKKNGMIPILFISSKATDEDRLHGFRIGGDDFLVKPFSMRELIMRIGVFL 120 >gi|78186755|ref|YP_374798.1| response regulator receiver domain-containing protein [Chlorobium luteolum DSM 273] gi|78166657|gb|ABB23755.1| response regulator receiver domain protein (CheY-like) [Chlorobium luteolum DSM 273] Length = 137 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ D+ + + L K GY V NG + EP+ L++TD+ MP +DG+ Sbjct: 2 KRILVIDDEPDILNLMRRMLEKHGYRVSCAENGKIGLQHIDHEPYDLVITDMQMPGVDGM 61 Query: 63 ELARRATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ PD +++ I+G + A L+ A A +L+KPF ++ V V +L Sbjct: 62 AIIHHLSKRAPDTRIIAISGGIKLYGADNLDRAEEAGAEA-ILAKPFTTKEFVATVAGVL 120 >gi|220931603|ref|YP_002508511.1| response regulator receiver protein [Halothermothrix orenii H 168] gi|219992913|gb|ACL69516.1| response regulator receiver protein [Halothermothrix orenii H 168] Length = 122 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++++L+ +D MR + L + GYE+V NG A +E L++ DI MPEM Sbjct: 2 MSKRVLIVDDAAFMRMMIKNILTEGGYEIVGEAENGIDAAKLYKELKPDLVMMDITMPEM 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ ++ E+D D K++ + A+ D+ + KPF ++ V+R+L Sbjct: 62 DGIDAVKKIIEIDKDAKIVMCSAMGQQAMVLDAIQAGAKDFVVKPFKPDRVLEAVSRVL 120 >gi|223937199|ref|ZP_03629106.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223894221|gb|EEF60675.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1309 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPE-M 59 + +L+ ED+ +R + L + GY V+ +G +A +E + SLLLTD+VMP + Sbjct: 1187 ETVLVVEDETPLRVLVRNVLERYGYRVLEAVSGPAALSVWQEHKDEISLLLTDMVMPHGI 1246 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA R P LKV++ +G++ + D + L KP+H R L V L Sbjct: 1247 TGRELAERLLADKPKLKVIYSSGYSLAVVGADMVLQEGLNFLQKPYHPRKLAQAVRDCL 1305 >gi|118578876|ref|YP_900126.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] gi|118501586|gb|ABK98068.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] Length = 124 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+++ R L K L + GYEV S NG A +R L++TDI MPEM+G+ Sbjct: 6 KRILVVDDEENARIALSKILTREGYEVASAGNGQEALTYLRARDVELVITDINMPEMNGM 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R ++ P V+ IT + V ++ + ++KP + +L Sbjct: 66 AFLRELNKIRPASNVIMITAYGEVESYIEAMNLGAFEYINKPVKIDEL 113 >gi|319957218|ref|YP_004168481.1| two component transcriptional regulator, winged helix family [Nitratifractor salsuginis DSM 16511] gi|319419622|gb|ADV46732.1| two component transcriptional regulator, winged helix family [Nitratifractor salsuginis DSM 16511] Length = 226 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++K+L+ EDD ++ L L AGYEVV +G A D++ E+ F LLL D+ P ++G Sbjct: 3 SKKLLVLEDDANLSATLCDYLESAGYEVVPAYDGEEAQDRLYEQSFDLLLLDVNTPGVNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + A E + +FIT +V + L KPF L++L + LL Sbjct: 63 FDFLKEAREQGTETPAIFITARRSVEDLEEGFRSGADDYLRKPFELKELKIRIETLL 119 >gi|317052558|ref|YP_004113674.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316947642|gb|ADU67118.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 216 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 58/109 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D++++R + +AL Y +S +G A D R F L D+V+P ++GI Sbjct: 4 KTILVVDDNNELRENICEALESENYTCLSAASGEEAIDIARNHAFEAALVDLVLPGINGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 EL + + P +++ IT +A V ++ + L KPF+ DLV Sbjct: 64 ELIGQLRQQRPHARIIMITAYATVENAVEAMKQGASDYLIKPFNTSDLV 112 >gi|209550745|ref|YP_002282662.1| Fis family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536501|gb|ACI56436.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 444 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP MDG Sbjct: 3 DAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L ++ ELDP++ V+ +TG V L + + KPF L + R + Sbjct: 63 MTLMQKIRELDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAM 119 >gi|323697601|ref|ZP_08109513.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. ND132] gi|323457533|gb|EGB13398.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio desulfuricans ND132] Length = 467 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIK--ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M+Q+IL+ +D+ D + L + A G E+ +GA A + ++ L+L+D+ MP Sbjct: 1 MSQRILIVDDEPDFAQGLARLIASGFPEVEISLTGDGAEALEILKSSGVDLMLSDLRMPR 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++G EL RA E++P L V+ +TGF +V + L+KP +L+ V + L Sbjct: 61 LNGQELLHRALEIEPGLTVILVTGFGSVEAAVTALKAGAYDFLTKPVKRDELLRSVQKGL 120 >gi|167765067|ref|ZP_02437180.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183] gi|167696695|gb|EDS13274.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183] Length = 1350 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ ED+D++R +L + L + Y V C+NG SA V+E L+++DI+MPEM G Sbjct: 1089 QKILIVEDNDELREYLRRTLAE-NYHVQVCSNGKSALCIVKEYFPDLIISDIMMPEMRGD 1147 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL ++ D+ I ALN D N + + KPF++ L + L Sbjct: 1148 ELCQKVKN---DIDTSHIPVILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANL 1204 Query: 118 L 118 L Sbjct: 1205 L 1205 >gi|167630305|ref|YP_001680804.1| response regulator receiver domain [Heliobacterium modesticaldum Ice1] gi|167593045|gb|ABZ84793.1| response regulator receiver domain [Heliobacterium modesticaldum Ice1] Length = 120 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K GY+VV+ NGA A +K +E L DI MPEM Sbjct: 1 MGNRILIVDDAAFMRMMIKDILTKNGYQVVAEAENGAVAVEKWKEFRPDLTTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI R ++DP+ +V+ + A+ D+ + KPF ++ V + L Sbjct: 61 DGINAVRAIRQVDPNARVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQPDRVLEAVRKALA 120 >gi|21243288|ref|NP_642870.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306] gi|21108826|gb|AAM37406.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 540 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY ++S ++G A + + + P L TD++MP M Sbjct: 415 NETILVVEDKQDVAVVARMFLENAGYRILSASSGREAMEILEKNPEVDALFTDLIMPGGM 474 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V++KP+ ++L+ + LL Sbjct: 475 NGVMLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 533 >gi|120608934|ref|YP_968612.1| Fis family two component sigma-54 specific transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120587398|gb|ABM30838.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidovorax citrulli AAC00-1] Length = 459 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 39/114 (34%), Positives = 61/114 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L EDD +RR +AL A V + +G +A D ++P ++++TDI MP +DG+EL Sbjct: 17 VYLIEDDAMVRRAYGQALELAHIPVRAFPHGQAALDAFGQDPPAVVVTDICMPGLDGMEL 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + D DL V+ +TG VA+ ++ + KPF L+ V R L Sbjct: 77 LRLLRQRDADLPVVLVTGHGDVAMAVEAMRDGAYDFIEKPFSSERLLLTVRRAL 130 >gi|11499995|ref|NP_071241.1| response regulator [Archaeoglobus fulgidus DSM 4304] gi|2650670|gb|AAB91243.1| response regulator [Archaeoglobus fulgidus DSM 4304] Length = 114 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL ED+ D+ L + YEV+ ++G A + +E ++L D+ +P +DG+ Sbjct: 2 KKILLVEDEPDLLEIFGHML--SDYEVIKASDGNEAIELFKEHKPDIVLMDVELPGIDGV 59 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR E +P KV+ IT FA+ + +VL KPF + +L+ + + L Sbjct: 60 EATRRILEYNPAAKVIAITAFAS-RRGKEMLEAGAVEVLKKPFRMHELLETIKKYL 114 >gi|315222867|ref|ZP_07864751.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188061|gb|EFU21792.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 228 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL +D+ ++ + L +AGYEV ++G A + ++ L++TDI+MP MD Sbjct: 1 MAKRILLVDDEVEITEINKRYLIQAGYEVNVAHDGQEALEIFQKYSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L L P+ +FIT + S + ++KPF R+LV VN +L Sbjct: 61 GYDLIGEVQYLSPEQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNIL 118 >gi|294677286|ref|YP_003577901.1| signal transduction histidine kinase [Rhodobacter capsulatus SB 1003] gi|294476106|gb|ADE85494.1| signal transduction histidine kinase [Rhodobacter capsulatus SB 1003] Length = 767 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V N A + ++ F + +TD++MP MDG Sbjct: 646 VLLVEDEAPVRAFASRALKLRGYTVFEAENAEEALRILEDDQLQFDVFVTDVIMPGMDGP 705 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A + PD V+F++G+A N+ L KPF L +L V Sbjct: 706 TWVAEALKTRPDTAVVFVSGYAEDVFREGRPPTPNSVFLPKPFSLSELTATV 757 >gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] Length = 225 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+ V NGA + ++EPF LL+ DI+MP+M+G++ Sbjct: 3 KILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDIIMPKMNGLD 62 Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ +L D V+ +T L KPF ++L + LL Sbjct: 63 LCRQYRQLYGYDSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALL 118 >gi|322382234|ref|ZP_08056147.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153815|gb|EFX46183.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 133 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 63/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + K+L+ +D + +R L++ GYE NG +A + VR+E L+L D+ +P MD Sbjct: 6 LKNKVLIVDDQNGIRVLLMEVFNNEGYETFQAPNGKTALEIVRKEAPDLVLLDMKIPGMD 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+++ + +D +KV+ +T + + + ++ +KPF + ++ V + L+ Sbjct: 66 GLDILKHIKNIDSSIKVIMMTAYGELDMIKEATELGAIMHFTKPFDIDEMRQAVQQQLS 124 >gi|255320447|ref|ZP_05361628.1| nitrogen regulation protein NR [Acinetobacter radioresistens SK82] gi|262378343|ref|ZP_06071500.1| nitrogen regulation protein NR(I) [Acinetobacter radioresistens SH164] gi|255302419|gb|EET81655.1| nitrogen regulation protein NR [Acinetobacter radioresistens SK82] gi|262299628|gb|EEY87540.1| nitrogen regulation protein NR(I) [Acinetobacter radioresistens SH164] Length = 491 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G+EV S SA D++ P ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRTMRWVLEKTFKEEGFEVTSFEEAQSALDQLMLAPPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + +PDL V+ +T + + S + L KPF + + + V R + Sbjct: 65 FLSKVKQSNPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVQRAI 119 >gi|239616521|ref|YP_002939843.1| response regulator receiver modulated metal dependent phosphohydrolase [Kosmotoga olearia TBF 19.5.1] gi|239505352|gb|ACR78839.1| response regulator receiver modulated metal dependent phosphohydrolase [Kosmotoga olearia TBF 19.5.1] Length = 397 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 3/92 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +N KIL A DD+ ++++ L K+ GYEV S NG A +K+ E+ F ++++DI+MPEM Sbjct: 30 INMKIL-AVDDNKENIYMLETLFKSYGYEVESSQNGVEALEKLAEQDFDVVISDILMPEM 88 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPD 91 DG +L RR ++D LK + + A +P+ Sbjct: 89 DGFQLCRR-VKMDDRLKEIPFILYTAAYTDPE 119 >gi|56752286|ref|YP_172987.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|24251267|gb|AAN46187.1| unknown protein [Synechococcus elongatus PCC 7942] gi|56687245|dbj|BAD80467.1| two-component response regulator [Synechococcus elongatus PCC 6301] Length = 126 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++D L + L + G+EVV ++GA+ D R E L+L D+ +P MDG E Sbjct: 8 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A R + DP+L+ + A A+ D A +KP L L++++ +LL Sbjct: 68 -ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 124 >gi|254693827|ref|ZP_05155655.1| nitrogen regulation protein NtrC [Brucella abortus bv. 3 str. Tulya] gi|261214111|ref|ZP_05928392.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260915718|gb|EEX82579.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 491 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVWVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|153010799|ref|YP_001372013.1| two component, sigma54 specific, Fis family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562687|gb|ABS16184.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ochrobactrum anthropi ATCC 49188] Length = 450 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 59/112 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++L +DD +RR + L AG+EV + A + V E +++TD+ MP++DG++ Sbjct: 8 VILVDDDKALRRATRQTLELAGFEVTDFPSALDALNSVTFEYDGVVVTDVRMPQIDGLQF 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R +DPDL V+ ITG + + + ++KPF LV+ + R Sbjct: 68 FARIKTIDPDLPVILITGHGDIPMAVQAIQDGAYDFIAKPFAADRLVHSIRR 119 >gi|317405341|gb|EFV85662.1| sensor protein [Achromobacter xylosoxidans C54] Length = 1004 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +++ ED+ ++R + + L + G V++ +G + +++R LL++D+ +P ++G + Sbjct: 875 VMVVEDEANVREMVCECLAELGMRVLAAEDGDTGLERLRANADIDLLISDVGLPGLNGRQ 934 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A P LKV+ +TG+A A +++ KPF L L V R+L Sbjct: 935 LADAARATHPGLKVLLMTGYAESAARGSGFLDTGMELIVKPFALDALAQRVQRML 989 >gi|298251934|ref|ZP_06975737.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] gi|297546526|gb|EFH80394.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] Length = 632 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%) Query: 5 ILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYD-----KVREEPFSLLLTDIVM 56 ILL +DD D+ R + + + + Y V+ ++GA A D +R EP +LLLTD M Sbjct: 84 ILLVDDDPDVLRAIERDVRRHFGGTYRVLRASSGAQALDILTQLALRHEPVALLLTDQRM 143 Query: 57 PEMDGIELARRATELDPDLKVMFITGFA 84 PEMDG+E +A EL P K +T +A Sbjct: 144 PEMDGVEFLEQAKELSPQAKRALLTAYA 171 >gi|237722776|ref|ZP_04553257.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447298|gb|EEO53089.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1331 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ L K Y + +C NG A +RE +++DI+MPEM G Sbjct: 1066 QRILIVEDNDDLRNYLVDML-KTSYNIQACPNGKDALIIIREFNPDFVISDIMMPEMSGD 1124 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + DL++ I AL + N + ++ ++KPF + L + L Sbjct: 1125 EL---CSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNL 1181 Query: 118 L 118 L Sbjct: 1182 L 1182 >gi|289208173|ref|YP_003460239.1| Fis family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943804|gb|ADC71503.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thioalkalivibrio sp. K90mix] Length = 468 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 1/113 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D+ R L + ++ VV+ +GA+ + +E F +LTD+ M +DG Sbjct: 17 NARLLVIDDEPIACRQLEQVFRRSPCTVVTHEDGAAGLQALEQERFDAVLTDLRMAGVDG 76 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +++ RA ELDPDL V+ ITG A + ++ ++KPF + D V EV Sbjct: 77 MQILHRARELDPDLAVIMITGHATLDSAVEAMKAGAFHYIAKPFRI-DEVREV 128 >gi|210135554|ref|YP_002301993.1| response regulator [Helicobacter pylori P12] gi|210133522|gb|ACJ08513.1| response regulator [Helicobacter pylori P12] Length = 213 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKAFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|91783178|ref|YP_558384.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91783208|ref|YP_558414.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91687132|gb|ABE30332.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91687162|gb|ABE30362.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 789 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD ++ +++ L GY V+ ++ A +R LL TD+VMP + Sbjct: 530 ETVLVVEDDAKVQSTVVEMLAGLGYSVLKADDAEQALAVIRSGVHIDLLFTDVVMPGALR 589 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+AR+A +L P LKV+F +G+ A+ ++LSKP+ +L ++ +L Sbjct: 590 SPEMARQAVQLLPHLKVLFTSGYTQNAIVHGGRLDAGVELLSKPYSQEELARKLRHVL 647 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD + + L G+ N A +++ E F +LLTD+ +P++ GI+L Sbjct: 678 VLVVEDDVASLDAVCELLEMLGHHTAKAANAKQAMEQIGTESFDVLLTDLNLPDVFGIDL 737 Query: 65 ARRATELDPDLKVMFITG 82 A++A PDL V+F +G Sbjct: 738 AQQAVAAHPDLHVIFASG 755 >gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1] gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1] gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family [Bacteroides xylanisolvens XB1A] Length = 225 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 46/66 (69%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL ED+ ++ F+ + L + G+ V C++G + + +++EPF LL+ DI+MP+++ Sbjct: 1 MMAKILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEPFDLLILDIIMPKIN 60 Query: 61 GIELAR 66 G+EL R Sbjct: 61 GLELCR 66 >gi|81300626|ref|YP_400834.1| response regulator receiver domain-containing protein [Synechococcus elongatus PCC 7942] gi|81169507|gb|ABB57847.1| response regulator receiver domain protein (CheY-like) [Synechococcus elongatus PCC 7942] Length = 121 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++D L + L + G+EVV ++GA+ D R E L+L D+ +P MDG E Sbjct: 3 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A R + DP+L+ + A A+ D A +KP L L++++ +LL Sbjct: 63 -ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 119 >gi|296532353|ref|ZP_06895088.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957] gi|296267325|gb|EFH13215.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957] Length = 860 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD ++ +++ L GY V+ C++G SA +R LL TD+VMP + Sbjct: 589 ETVLVVEDDPAVQATVVELLQDLGYTVLRCSDGQSALTLLRSGVSIDLLFTDVVMPGPVR 648 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+ + P V+F +G+ A+ +LSKP+ DL +V + L Sbjct: 649 APELARQVQTMQPHAAVLFTSGYTENAIVHGGRLDPGVNLLSKPYRREDLARKVRQAL 706 >gi|321315400|ref|YP_004207687.1| regulator of chemotaxis and motility [Bacillus subtilis BSn5] gi|291484186|dbj|BAI85261.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] gi|320021674|gb|ADV96660.1| regulator of chemotaxis and motility [Bacillus subtilis BSn5] Length = 120 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G+EVV+ NGA A +K +E L+ DI MPEM Sbjct: 1 MAHRILIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++D +++ + ++ D+ + KPF ++ +N+ L+ Sbjct: 61 DGITALKEIKQIDAQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS 120 >gi|153004660|ref|YP_001378985.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028233|gb|ABS26001.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 466 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 58/102 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +R L L K GY V +G SA +K++ E +S+++ D+ MP MDG++ Sbjct: 7 RILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMPGMDGLQ 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + A +L P+L V+ +T +A V + L KPF Sbjct: 67 VLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPF 108 >gi|116251644|ref|YP_767482.1| nitrogen fixation two component sensor/regulator fusion transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115256292|emb|CAK07373.1| putative nitrogen fixation two component sensor/regulator fusion transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 639 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + IL+ EDD +RR I L GY V+ NG A ++ +LL +D+ MP M+G Sbjct: 515 ETILVVEDDARVRRVTISRLQTLGYSVIEATNGIDALKELEAGHDVALLFSDVAMPGMNG 574 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ELAR+ E P +K++ +GF+ + A L KP+ ++ + LL + Sbjct: 575 DELARKVRERWPRVKILLTSGFSE-PHAAEKEIEAGAGWLKKPYTASEMSTRLRLLLDAR 633 Query: 122 N 122 + Sbjct: 634 H 634 >gi|327189331|gb|EGE56499.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 689 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +ILL +DD + ++ L G++VV N+G+ A + +R F +++TD MP M G Sbjct: 568 RILLVDDDTLIAMSSVEMLEDLGHDVVEANSGSQALEAIRSGRHFDVMITDYSMPGMTGA 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA+ + P L ++ TG+A + + N P+ L KP++ LV E+++ + Sbjct: 628 QLAQAVRAIRPALPIVLATGYADLPAGAEVNLPR----LGKPYNQDQLVREIHKAI 679 >gi|258593741|emb|CBE70082.1| putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 460 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 60/108 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ +R FL L K GY V++ ++G A + + + L+++D+ MP+MDGI Sbjct: 2 ETILVVDDEQGIREFLTVLLEKQGYRVITASDGERALELIAHQSPDLVISDVRMPKMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L + DP L V+ +T +A++ + ++KPF + ++ Sbjct: 62 GLLTGIRKTDPHLPVIMVTAYASMDSTIQAMRLGAHDYITKPFRIDEI 109 >gi|256843524|ref|ZP_05549012.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|293381453|ref|ZP_06627449.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|312978303|ref|ZP_07790046.1| DNA-binding response regulator DltR [Lactobacillus crispatus CTV-05] gi|256614944|gb|EEU20145.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|290921970|gb|EFD98976.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|310894822|gb|EFQ43893.1| DNA-binding response regulator DltR [Lactobacillus crispatus CTV-05] Length = 221 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ + R L A+ AGY+V +NG A + +E + +++ DI+MP MDGI Sbjct: 2 KILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ E ++ +T A V DS A L+KPF L++L+ Sbjct: 62 ALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|172064058|ref|YP_001811709.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171996575|gb|ACB67493.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 589 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EMD 60 + IL+ EDD ++R ++ L + GY+VV+ ++G +A + + LL TD++MP + Sbjct: 465 ETILVVEDDAEVRLTVVDMLTQLGYKVVTASDGEAALQILDCDTHIDLLFTDVIMPGRIK 524 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P L V+F +G+ + +L KP+ +L + +L Sbjct: 525 GGELARRAAQRTPPLPVLFTSGYTRDEIFHSGRLDPGVMLLGKPYRRDELAARIRDML 582 >gi|21107860|gb|AAM36536.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 676 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEM 59 ++ +LL ED+ +R + + L +AGY V+ G++A +++R +E +L+TD+ + + Sbjct: 553 SRTVLLVEDETAIRVLISEVLTEAGYRVIETAEGSAAVERLRSQEHIDVLVTDVGLTGGL 612 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A + P L V+F+TG+AA A +VL+KPF +L V +LL Sbjct: 613 NGRQVADAGRQSRPALPVLFVTGYAASAAVGAGQLDDGMEVLTKPFQAIELERRVAQLL 671 >gi|218779919|ref|YP_002431237.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761303|gb|ACL03769.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 746 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL +D+ M + LG+ GY VV+ ++ A D R P F L++TD+ MPEM Sbjct: 624 SESILFVDDEASMVEMAEQMLGRLGYGVVTLSSPVEALDAFRNNPSKFDLIMTDMSMPEM 683 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+EL + ++D + V+ TG++ + A +SKP + + + + ++L Sbjct: 684 SGVELFEKIRQVDETIPVVICTGYSNQINEKKALEMGMAAYVSKPMSMHGIASTLRQILD 743 Query: 120 IKN 122 K+ Sbjct: 744 KKS 746 >gi|162453847|ref|YP_001616214.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161164429|emb|CAN95734.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 955 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D + R +I L G+E+ N+G D+ E F L++TD+ MP +DG Sbjct: 739 RRLLVVDDKPENRAVVISMLATLGFELAEANDGQEGLDRTARERFDLIITDLAMPVLDGW 798 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLT 119 E+ RR P+L I +A A D + A L+KP + +L+ ++ R L Sbjct: 799 EMMRRMRRA-PELAGTVIIASSASAFITDQDKSLEAGADDFLAKPLQMDELLEKLQRHLK 857 Query: 120 IK 121 ++ Sbjct: 858 LE 859 >gi|149920527|ref|ZP_01908994.1| serine/threonine kinase with two-component sensor domain [Plesiocystis pacifica SIR-1] gi|149818571|gb|EDM78017.1| serine/threonine kinase with two-component sensor domain [Plesiocystis pacifica SIR-1] Length = 1939 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + IL+ ED+ +RR + + L G+EV+ +G + + E L+LTD VMP + Sbjct: 1821 ETILVVEDEAPVRRTVQQILQLYGFEVLCTEDGLACLELCAEYDGTIDLVLTDFVMPRLG 1880 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++LA++ E+ PD KV+F++G+ L+ +++ KPF + L+ V +L Sbjct: 1881 GLDLAKQLREIRPDAKVLFMSGYTDGELDESKIRELGGIELIQKPFRAKKLIERVRAML 1939 >gi|315586031|gb|ADU40412.1| response regulator [Helicobacter pylori 35A] Length = 213 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 13/125 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCTFNGKEAYERLSVECFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNE 113 +EL RR + V+FIT D+ KNA L KPF L +L Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQ------DNATLKNAFNLGANDYLKKPFDLDELEAR 114 Query: 114 VNRLL 118 + R Sbjct: 115 IKRFF 119 >gi|297621789|ref|YP_003709926.1| sigma-54 dependent response regulator atoC [Waddlia chondrophila WSU 86-1044] gi|297377090|gb|ADI38920.1| sigma-54 dependent response regulator atoC [Waddlia chondrophila WSU 86-1044] Length = 461 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 51/84 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++ +R F+ + L + G+EV + NG + ++ + L+ TD+ MP++ GI Sbjct: 4 EKILVIDDEEIIRTFIAETLSREGFEVSTAENGKKGIGQFKDCSYDLVFTDMKMPDLTGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 E+ + E+ P V+ IT + ++ Sbjct: 64 EVLTKIKEVSPQTPVVVITAYGSI 87 >gi|193214209|ref|YP_001995408.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087686|gb|ACF12961.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 627 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+ ED++ +R + L + GY+ ++ ++G A A+ + +P +L+TD+VMP M Sbjct: 504 ETILIVEDEELIRNTISSNLKRQGYKTLTASDGEEALAFSQAYGDPIHILVTDVVMPNMS 563 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA E P+ ++++++G+A + K+ + KPF +L + + L Sbjct: 564 GKQLADNFLEAHPETEIIYMSGYADKQVMKHGIFDKDVLFIQKPFTFHELAKLMAKAL 621 >gi|148658130|ref|YP_001278335.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148570240|gb|ABQ92385.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 127 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 2/108 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 N ++L ED+ D+ L + + GY++V+ ++GA A ++ P L++TD MP M Sbjct: 8 NPAVVLVEDEPDILIILHRLMRDLTGGYDIVTVSSGAEALAQIALRPVPLVITDYNMPGM 67 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +G++L E PD +V+ IT +A L + + L KPF L Sbjct: 68 NGLQLTTAIKETSPDTRVVLITAYATPELEKRAREQRVDYYLPKPFPL 115 >gi|308064140|gb|ADO06027.1| putative transcriptional regulator [Helicobacter pylori Sat464] Length = 213 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARRATE----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +EL RR P V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLIFTP---VIFITALHDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 Query: 117 LL 118 Sbjct: 118 FF 119 >gi|229542467|ref|ZP_04431527.1| response regulator receiver protein [Bacillus coagulans 36D1] gi|229326887|gb|EEN92562.1| response regulator receiver protein [Bacillus coagulans 36D1] Length = 121 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 56/116 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +R L + L K GYE NG A L+L D+ +P MDGIE+ Sbjct: 6 ILIVDDQFGIRVLLTEVLQKEGYETFQAANGPQALSLAANHEIDLVLLDMKIPGMDGIEI 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ E+ PD++ + +T + + L + +KPF + D+ V + L + Sbjct: 66 LKKLKEMKPDIRAIIMTAYGELDLIEKAKELGALTHFAKPFDIDDIRKAVKKYLAM 121 >gi|224372707|ref|YP_002607079.1| signal-transduction regulatory protein [Nautilia profundicola AmH] gi|223589225|gb|ACM92961.1| signal-transduction regulatory protein [Nautilia profundicola AmH] Length = 371 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + EDD +MR+ L AL GY+VV + A K+ ++ L+++DI MP+MDGIE Sbjct: 2 KIAIVEDDINMRKSLSLALKSEGYDVVEFRHALDALKKL-DDSIDLIISDITMPKMDGIE 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + EL V+ ITG A + ++ L+KPF + DL+ + R Sbjct: 61 FVK---ELGGKYDVIMITGNATLNKAIEALRLGVKDFLTKPFEIEDLIAAIER 110 >gi|294507366|ref|YP_003571424.1| Response regulator receiver containing Stage II sporulation protein E (SpoII) domain [Salinibacter ruber M8] gi|294343694|emb|CBH24472.1| Response regulator receiver containing Stage II sporulation protein E (SpoII) domain [Salinibacter ruber M8] Length = 371 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R L LGK YEV + NG A D++ E L+++DI+MP+MDG L Sbjct: 6 ILVVEDDSTVRELLKYRLGKH-YEVYTATNGEEALDQIEETIPDLIISDIMMPKMDGFAL 64 Query: 65 ARRATELDPDLKV---MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A + D + +V +F+T A ++KPF + L++ V RLL Sbjct: 65 -QSALQTDKNTRVIPFIFLTARADEEARQQGERKGVDDYITKPFDMETLLSRVERLL 120 >gi|325680662|ref|ZP_08160200.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324107442|gb|EGC01720.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 201 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ E D ++ + K L GYE V C N AY+++ F L+++DI+MP++DG E Sbjct: 3 RILVVEGDKELNATVCKYLCLNGYEAVGCLNAVDAYNEMYGASFDLIISDIMMPKIDGFE 62 Query: 64 LARRATELDPDLKVMFIT 81 A L+ D+ ++F+T Sbjct: 63 FAETVRGLNKDIPILFMT 80 >gi|70730939|ref|YP_260680.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68345238|gb|AAY92844.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 846 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMD 60 + +++ EDD +R ++ L + GY + SA + E P LL+TD+ +P M+ Sbjct: 726 ETVVVVEDDPAVRMLVLNVLAELGYRAFEAEDARSAL-PLLESPMRVDLLVTDVGLPGMN 784 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + P LKV+F+TG+A A +++KPF + ++ ++ +++ Sbjct: 785 GRQLAEIARQQRPGLKVLFMTGYAEKAAERQGFLEPGMDLMAKPFSIEEMAQKIRQMI 842 >gi|229176012|ref|ZP_04303507.1| Sporulation initiation phosphotransferase F [Bacillus cereus MM3] gi|228607444|gb|EEK64771.1| Sporulation initiation phosphotransferase F [Bacillus cereus MM3] Length = 122 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ +T + + + ++ +KPF + ++ V L + Sbjct: 61 GIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVREQLAV 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|256829166|ref|YP_003157894.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578342|gb|ACU89478.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 912 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP---EM 59 +IL+ +D+ +R L + L +AGY V + NG K+R F L+L DI MP + Sbjct: 789 HRILVVDDEQHIRDILSETLREAGYVVETAPNGDEGVRKLRSGSFDLILLDIRMPIHSGL 848 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 D ++L RR P V+ ITG A+ ++ AK + KPFHL+ L+++++ +L Sbjct: 849 DVLKLLRRNGGAPP---VIIITGLASSEELEEALRLGAAKCIRKPFHLKTLLSDISGIL 904 >gi|153009402|ref|YP_001370617.1| nitrogen metabolism transcriptional regulator NtrC [Ochrobactrum anthropi ATCC 49188] gi|151561290|gb|ABS14788.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Ochrobactrum anthropi ATCC 49188] Length = 490 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY+V +N AS + V L++TD+ MP+ + +L Sbjct: 10 ILVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVITDVNMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKMRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e] gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes str. 1/2a F6854] gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland 1988] gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL R2-561] gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL N3-165] gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S] gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161] gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes J2818] gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes F6900] gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578] gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923] gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e] gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL N3-165] gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes F6900] gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578] gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923] gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes J2818] Length = 220 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+AEDD + + L +AGY+V++ NG AY ++E F L++ DI+MP MDG Sbjct: 2 EKILIAEDDSAILGVITAFLTEAGYQVMTAKNGIEAYHLFQKETFDLIIMDIMMPSMDGY 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 L R+T P L + AL+ + + K + + KPF L+ V Sbjct: 62 TLTELIRSTSTTPILMM--------TALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQ 113 Query: 116 RLL 118 LL Sbjct: 114 VLL 116 >gi|323701988|ref|ZP_08113657.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323533074|gb|EGB22944.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 448 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 60/110 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D++ M L +AL GY+V++ G +E S+++ D+ MP++D Sbjct: 1 MIPRVLVIDDEERMCWALERALSHEGYQVITTTRGVQGVSLAQEMDPSIVVLDLKMPDLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE+ R+ + +P++ V+ IT + ++ ++KPF L +L Sbjct: 61 GIEVLRKIKDFNPNIPVIMITAHGTIETAIEAMKIGATDYITKPFKLEEL 110 >gi|225857948|ref|YP_002739458.1| response regulator SaeR [Streptococcus pneumoniae 70585] gi|225720881|gb|ACO16735.1| response regulator SaeR [Streptococcus pneumoniae 70585] Length = 232 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L L P+ +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYLLPEQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|163760107|ref|ZP_02167190.1| two component response regulator nitrogen regulation protein NR(I) [Hoeflea phototrophica DFL-43] gi|162282506|gb|EDQ32794.1| two component response regulator nitrogen regulation protein NR(I) [Hoeflea phototrophica DFL-43] Length = 483 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+A+DD +R L +AL +AGYEV +N A+ + V L++TD+VMP+ + Sbjct: 3 NATILVADDDAAIRTVLNQALTRAGYEVRITSNAATLWRWVSAGEGDLVITDVVMPDENA 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ R PDL V+ ++ ++ L KPF L +++ + R L+ Sbjct: 63 FDMLPRIRRARPDLPVLVMSAQNTFMTAIKASEGGAYDYLPKPFDLTEMIGTIGRALS 120 >gi|146342688|ref|YP_001207736.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146195494|emb|CAL79519.1| Hypothetical protein; putative two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] Length = 861 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EMD 60 ++IL+ ED+ + L GY+ V N A ++ R PFSL+LTDIV+P +M Sbjct: 740 ERILVVEDNVLVGAMASTMLSAMGYDPVVVINATMAIAELERRGPFSLMLTDIVLPGDMT 799 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GI+LAR+ P L ++F++GFA +L P+ + +L+KPF L L + + Sbjct: 800 GIDLARQVRGRWPGLPIIFMSGFADPSLVPE-DFRATTTLLAKPFRLGQLSDAI 852 >gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 198 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q IL+ +DD D+ +L L GY V N+ +A + +R+ + +++ DI+MP++ Sbjct: 1 MQQLSILVVDDDKDVCEYLQDFLSSEGYRVSIVNDPTNALEALRQSEYHVVVLDIMMPKL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +GI+L + + D D+ V+ +TG+ ++ S + + KPF + + + R+ Sbjct: 61 NGIDLLEQIRQSDDDIAVIILTGYPSLETATSSIEHDVSAYIRKPFTIAEFREAIQRI 118 >gi|262196488|ref|YP_003267697.1| Fis family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079835|gb|ACY15804.1| two component, sigma54 specific, transcriptional regulator, Fis family [Haliangium ochraceum DSM 14365] Length = 472 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDD MR L + LG AG+ V + ++VR P +++TD+ MP++DG +L Sbjct: 21 VLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDLDGFDL 80 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R D ++ +T F ++ + ++KPF + +LV +++ L Sbjct: 81 IRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKAL 134 >gi|254522512|ref|ZP_05134567.1| transcriptional regulator protein [Stenotrophomonas sp. SKA14] gi|219720103|gb|EED38628.1| transcriptional regulator protein [Stenotrophomonas sp. SKA14] Length = 256 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 3/92 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M + L+AED++ +R+ L++ LG+ E V C +GA+A +++ E+ + DI MP Sbjct: 1 MPLEALIAEDEELLRQSLVEQLGRLWPELKLVAECEDGATALEQLAEKQPDIAFLDIRMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALN 89 + GIE+AR +EL P +V+F+T + A++ Sbjct: 61 GISGIEVARALSELSPRTQVVFVTAYDQYAID 92 >gi|156742122|ref|YP_001432251.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156233450|gb|ABU58233.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 819 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R L + L G+ + +G +A++ + + F L+LTDI MP M G EL Sbjct: 693 ILVVDDEEAVRALLARLLTDLGHRPTTVASGEAAFEIIAQRSFDLILTDIKMPGMTGFEL 752 Query: 65 ARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + DP L +++FITG A A L+KPF + L VN L Sbjct: 753 YQHIRQRDPHLAQRIIFITGDTITASTQARLAQTGNPYLAKPFAIERLEALVNACL 808 Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D + L + L + GY + G +++R+ L+L D+ +P++ G Sbjct: 2 EEILIIDDSKQICSMLAEYVLPELGYASTIAHTGRQGLNRLRQRIPDLILLDLQLPDISG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L R + D+ V+ +T + A+ ++ L KPF + ++R L Sbjct: 62 LDLLRMIAQEGYDVPVILMTAHGSEAIAVEAFRLGARNYLIKPFSETEAQAAIDRAL 118 >gi|114327684|ref|YP_744841.1| sensory transduction protein kinase [Granulibacter bethesdensis CGDNIH1] gi|114315858|gb|ABI61918.1| sensory transduction protein kinase [Granulibacter bethesdensis CGDNIH1] Length = 141 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 8/113 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 +LL EDD +R ++ L G+ V + +G SA + +RE F ++++DI MP M G Sbjct: 27 SVLLVEDDGGVRDVILAGLSGRGFVVAAAESGESALEVLREHGGFDVVISDICMPGMSGF 86 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +L ++ L PD + I+G+ P +L KPF L L + + Sbjct: 87 DLRQKVMALYPDTYCILISGYTDCVSEP-------VPILRKPFRLSQLEDRIR 132 >gi|90408886|ref|ZP_01217024.1| putative response regulator [Psychromonas sp. CNPT3] gi|90309995|gb|EAS38142.1| putative response regulator [Psychromonas sp. CNPT3] Length = 462 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R LI L AGY V ++ A + ++ F L+++DI M M G+ Sbjct: 5 KLLVVEDDAGLREALIDTLLLAGYHCVEVDSAEQALIVLNQQKFDLVISDIQMGGMSGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 L + P L V+ +T +A + N NA ++ + L+KPF L+N+V+R I Sbjct: 65 LLQNIKRKYPQLPVLLMTAYATI--NDAVNAMRDGAIDYLAKPFSPEVLLNQVSRYAPIN 122 Query: 122 N 122 + Sbjct: 123 H 123 >gi|86750927|ref|YP_487423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573955|gb|ABD08512.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1426 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR ++ + LG++ YEV + +G +A + + L+++DI+MP +DG+ Sbjct: 648 RILLADDNPDMRDYVTRLLGES-YEVETVGDGVAALEAAWKHRPDLVISDIMMPRLDGLS 706 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L A R+ D+ V+F++ A + LSKPF R+L+ V L I Sbjct: 707 LLKALRSDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLDI 765 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---DKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ ++ F + L GYE V + A D+ F L+L+D+VMP MDG Sbjct: 1305 VLVVEDNAEVGEFSTQLLHDLGYETVLATSAEQALQLLDQDDAARFHLVLSDVVMPGMDG 1364 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L R P L V+ +G+A V + + ++L KP+ + DL + R L Sbjct: 1365 VALGREIRRRLPHLPVVLNSGYAHVLAD---DGHHGFELLHKPYSVEDLSKVLRRAL 1418 >gi|120603758|ref|YP_968158.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|120563987|gb|ABM29731.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] Length = 657 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 56/106 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ ILL +D++ +R+ L L AGY V + +G A + EE ++LTDI MP M Sbjct: 1 MSESILLVDDEEGIRKVLGITLADAGYRVTTAADGEEAMRRFAEERPDIVLTDIKMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G+EL D +++V+ +TG + L S ++KP + Sbjct: 61 GLELLESIKSRDSEVEVIMLTGHGDMELAIQSLKRDATDFITKPIN 106 >gi|78484571|ref|YP_390496.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78362857|gb|ABB40822.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1018 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R ++ L +AGY VV + +A +++ L+LTD+VMPE +G EL Sbjct: 893 ILVVDDDVSVRALAVEYLERAGYNVVMAYSADNALSVLKKHSVDLMLTDVVMPEKNGFEL 952 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 A PD+ ++F +GF LN +L KP+ L++ + L ++ Sbjct: 953 ANIVESEYPDVDIVFSSGFPKDILNQARLLKNKMILLDKPYRKAHLLSIIQSRLMLR 1009 >gi|46578674|ref|YP_009482.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448086|gb|AAS94741.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311232547|gb|ADP85401.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 657 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 56/106 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ ILL +D++ +R+ L L AGY V + +G A + EE ++LTDI MP M Sbjct: 1 MSESILLVDDEEGIRKVLGITLADAGYRVTTAADGEEAMRRFAEERPDIVLTDIKMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G+EL D +++V+ +TG + L S ++KP + Sbjct: 61 GLELLESIKSRDSEVEVIMLTGHGDMELAIQSLKRDATDFITKPIN 106 >gi|209549636|ref|YP_002281553.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535392|gb|ACI55327.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 691 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 KILL +DD + + L G+EVV N+GA A + + + F L++TD MP M G Sbjct: 542 KILLVDDDALIAMSSVDMLEDLGHEVVEANSGAQALELIGSGQHFDLMITDYSMPGMTGA 601 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +LA A + P L ++ TG+A + D + P+ L+KP++ L E+ + Sbjct: 602 QLAEAARAIHPALPIVLATGYADLPAGTDIDLPR----LAKPYNQDQLAREIAK 651 >gi|163793262|ref|ZP_02187238.1| Response regulator containing CheY-like receiver [alpha proteobacterium BAL199] gi|159181908|gb|EDP66420.1| Response regulator containing CheY-like receiver [alpha proteobacterium BAL199] Length = 490 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + GY+V S A + V + L++TD+VMP+ +G+++ Sbjct: 8 ILIADDDRAIRTVLNQALARLGYDVKSTGTAAGLWQWVEDGEGDLVITDVVMPDENGLDM 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + PDL+V+ ++ + ++ L KPF L +L+ V + L+ Sbjct: 68 LPRIRKARPDLRVIVMSAQNTLLTAVKASERGAFDYLPKPFDLNELIATVRKALS 122 >gi|332827076|gb|EGJ99861.1| hypothetical protein HMPREF9455_03734 [Dysgonomonas gadei ATCC BAA-286] Length = 1355 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 9/122 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED++++ + L K Y V++ +NG A D+V++ ++++D++MP MDG+EL Sbjct: 1108 VLLVEDNEELLTLIGNILSKH-YHVLTASNGVEALDRVKDNDIDIVISDVMMPRMDGLEL 1166 Query: 65 ARRATELDPDLKVMFITGFAAVALNP--DSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 RR L D++ I A N D NA +SKPF L+ L +N LT Sbjct: 1167 CRR---LKKDIETSHIPVILLTAKNSADDRIECYNAGADGYISKPFELKVLEARINNFLT 1223 Query: 120 IK 121 K Sbjct: 1224 NK 1225 >gi|320352850|ref|YP_004194189.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320121352|gb|ADW16898.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 357 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED +R L K LGK GY V + ++G A +R L+L DI+MP+MDG+EL Sbjct: 8 ILVVEDSPINQRLLCKLLGKEGYAVRTADHGQEALALLRTFRPDLILLDILMPQMDGLEL 67 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + E D+ V+FI+ + ++KPFH +++ ++ L + Sbjct: 68 CRLLKVGEATRDIPVIFISSLDDTSDKLSGFEAGGVDYITKPFHPAEVLARISTHLKL 125 >gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1199 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L K GYE NG A P L+L DIVMP +DG E+ Sbjct: 13 ILIVDDQPDNLRVLSALLRKRGYECRRAINGQLALRACNSNPPDLILLDIVMPVVDGYEV 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ++ E D+ V+F++ V + A A +SKPFH +++ V LT++ Sbjct: 73 CKQLKSGEKTCDIPVIFLSAKGEVFEKVKAFAAGGADYISKPFHSEEVLARVEHQLTMQ 131 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D+ R L L G+E++ +G +K E ++L D+VMP MDG Sbjct: 970 RKVLVVDDNQINRDILRNLLEPLGFEIIEAADGKECLNKAVEFKPDVILMDLVMPVMDGF 1029 Query: 63 ELARRATELDPDLKVMFITGFAAVALN 89 E RR L P+LK + + +A A + Sbjct: 1030 EATRRLRYL-PELKDIVLLAISASAFD 1055 >gi|168699625|ref|ZP_02731902.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 633 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +L+AEDD +R + L +AGY V+ G A R+ LLLTD+VMP + G Sbjct: 513 VLIAEDDATVRALAARVLRQAGYTVLEAGRGEEALRLARDHIGTVDLLLTDVVMPGVGGH 572 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R +P+++V+F +G+ A+ L KP+ L + V+ +L Sbjct: 573 ELVERLWRTNPNIRVLFTSGYMDDAVVRHGVETAKVNFLQKPYTPASLAHTVHEVL 628 >gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 220 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+AEDD + + L +AGY+V + NG AY ++E F L++ DI+MP MDG Sbjct: 2 EKILIAEDDVTILGVITAFLTEAGYQVTTAQNGIEAYHFFQKEAFDLIIMDIMMPSMDGY 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 L R+T P L + AL+ +S+ K + + KPF L+ V Sbjct: 62 TLTELIRSTSSAPILMM--------TALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQ 113 Query: 116 RLL 118 LL Sbjct: 114 VLL 116 >gi|77459360|ref|YP_348867.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77383363|gb|ABA74876.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 647 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + +L+ ED +R F+ + L AGY + +A ++++ + LLLTD+ +P M G Sbjct: 528 EHVLIVEDMPAVRLFVTEVLEDAGYRCTQAGDIETALERLQNDASIDLLLTDVGLPRMTG 587 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA A L ++F+TG+A A+N +L KPF + L+++V R L Sbjct: 588 RELADVARGWREGLPILFMTGYAETAINRQVFLGAGMDMLVKPFQISALLDKVRRTL 644 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ R L + L + GYEV+ G + + L+ D+ +P+M G + Sbjct: 6 RLLIVDDNVATRYALRRRLERHGYEVLEAGTGGEGLALIASQSLDALILDVNLPDMSGFD 65 Query: 64 LARRATELDPDLKVMFITGFAAVAL 88 + R+ DP ++ + +A ++ Sbjct: 66 IVRK-LRADPGTALLPVIHVSAASI 89 >gi|86140347|ref|ZP_01058906.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Leeuwenhoekiella blandensis MED217] gi|85832289|gb|EAQ50738.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Leeuwenhoekiella blandensis MED217] Length = 387 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ ED+ +RR L+K L + Y+V +G + +K+++ + L+L DI MP+MD Sbjct: 2 SKILIIEDEAAIRRVLVKILTEENKAYQVEEAEDGLAGMEKIKDNDYDLVLCDIKMPKMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ ++ P++ ++ I+G + ++ +SKP L L+N V L Sbjct: 62 GVEVLEATKKVKPEIPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNALDR 121 Query: 121 KN 122 KN Sbjct: 122 KN 123 >gi|223939798|ref|ZP_03631669.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223891574|gb|EEF58064.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 893 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 67/116 (57%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 ++L ED+ +R+ KAL GY+V++ N+GA A + R+ +++LTD++MP MDG+ Sbjct: 779 VMLVEDEAAVRKATQKALQSFGYQVITANDGAEALAIYRQRQSEIAVVLTDMMMPIMDGM 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ P++K++ +G + + A VL+KP+ L+ + ++L Sbjct: 839 VMIERLRKMHPEVKIVAASG----NFSKNWEATGVKAVLAKPYKAETLLRTLRQVL 890 >gi|6467531|gb|AAF13178.1|AF181079_1 sensor kinase homolog [Rhodobacter capsulatus] Length = 419 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ +R F +AL GY V N A + ++ F + +TD++MP MDG Sbjct: 298 VLLVEDEAPVRAFASRALKLRGYTVFEAENAEEALRILEDDQLQFDVFVTDVIMPGMDGP 357 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 A + PD V+F++G+A N+ L KPF L +L V Sbjct: 358 TWVAEALKTRPDTAVVFVSGYAEDVFREGRPPTPNSVFLPKPFSLSELTATVQ 410 >gi|293115679|ref|ZP_05792608.2| sporulation initiation phosphotransferase F [Butyrivibrio crossotus DSM 2876] gi|292808781|gb|EFF67986.1| sporulation initiation phosphotransferase F [Butyrivibrio crossotus DSM 2876] Length = 126 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D MR + L K GY VV NGA A +K E L+L DI MPEM Sbjct: 7 MAKNILICDDAAFMRMMIKDILTKNGYTVVGEAENGAKAVEKYAELKPDLVLMDITMPEM 66 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ ++ E DP V+ + A+ +S + KPF ++ V +++ Sbjct: 67 DGIQALKKIKEADPSATVIMCSAMGQQAMVIESIQSGAKDFIVKPFQADRVLEAVRKVV 125 >gi|322420858|ref|YP_004200081.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320127245|gb|ADW14805.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 457 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D++ +R L L GY V +G A +E L+L DI MP+MD Sbjct: 1 MTETILIVDDEEGIRSSLAGILEDEGYRTVCAADGTEALALCNKELPGLVLLDIWMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE +R E P L V+ ++G + S + KP L +V V L++ Sbjct: 61 GIETLKRLKEQHPGLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALSM 120 >gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 222 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 1/114 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+Q+ILL ED+ D+ R + L +AGY V++ +G + RE L++ D+ +P+ D Sbjct: 1 MDQRILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDFD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G E+ARR + + ++ +T AV + ++KPFH +LV V Sbjct: 61 GAEIARRLRKTS-SVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV 113 >gi|260767708|ref|ZP_05876643.1| flagellar regulatory protein FleQ [Vibrio furnissii CIP 102972] gi|260617217|gb|EEX42401.1| flagellar regulatory protein FleQ [Vibrio furnissii CIP 102972] gi|315179460|gb|ADT86374.1| FlaM [Vibrio furnissii NCTC 11218] Length = 469 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ P ++++D+ M M G Sbjct: 4 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKTYPVDIVVSDVQMAGMGG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 64 LALLRNIKQHWPNLPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPVK 123 Query: 122 N 122 + Sbjct: 124 S 124 >gi|255280003|ref|ZP_05344558.1| DNA-binding response regulator SrrA [Bryantella formatexigens DSM 14469] gi|255269776|gb|EET62981.1| DNA-binding response regulator SrrA [Bryantella formatexigens DSM 14469] Length = 246 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 48/78 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ + + + L +G+ C N +AYD++ + L+++DI+MPE+DG E Sbjct: 26 KILVVEDDEKLNQIVCTYLNDSGFHAKGCLNARNAYDEMYNNRYDLIISDIMMPEIDGFE 85 Query: 64 LARRATELDPDLKVMFIT 81 A ++ P + ++F++ Sbjct: 86 FAGTVRQVSPTIPILFMS 103 >gi|78224454|ref|YP_386201.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195709|gb|ABB33476.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 464 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+DD R F+ L GY+VV +G A DK+ E L++TD++MP ++G+E Sbjct: 5 RLLIADDDKKTRDFVAAFLKYKGYDVVQACDGQDALDKLETEEVHLVITDLMMPRVNGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ + P ++ + F + + L KPF+L +L V R Sbjct: 65 FVKKLKTMRPGTVIIAYSAFGNYEMASNLLKAGVFFYLEKPFNLDELETHVKR 117 >gi|325125597|gb|ADY84927.1| Two-component response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 222 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++ Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + +M +T + + L+KPF L++L+ Sbjct: 62 AVKEIRSAGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELL 109 >gi|313141869|ref|ZP_07804062.1| signal-transduction regulatory protein [Helicobacter canadensis MIT 98-5491] gi|313130900|gb|EFR48517.1| signal-transduction regulatory protein [Helicobacter canadensis MIT 98-5491] Length = 433 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+ + EDD +MR+ L ALG+ +EVVS N A K+ ++ L++TDI MP+MDGI Sbjct: 3 KLAIVEDDINMRKSLEIALGEYEEFEVVSFKNAKDALKKL-DDSIDLIITDINMPQMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E R EL+ + + ITG A + DS L+KPF + LV ++R Sbjct: 62 EFLR---ELNGRYEALIITGNATLNKAIDSIRLGVKDFLTKPFDIETLVAAIHR 112 >gi|198277536|ref|ZP_03210067.1| hypothetical protein BACPLE_03758 [Bacteroides plebeius DSM 17135] gi|198270034|gb|EDY94304.1| hypothetical protein BACPLE_03758 [Bacteroides plebeius DSM 17135] Length = 1377 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 9/122 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ DMRR+ I++L K Y+++ NG A + + L+++D++MPEMDG+EL Sbjct: 1127 LLVVDDNHDMRRY-IRSLLKNEYKLLEAENGVEAMKIIEKHQVDLIVSDLLMPEMDGLEL 1185 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLLT 119 ++R E +L I A++ + N K + L KPF + +LT Sbjct: 1186 SKRVKE---NLATSHIPFLILTAVHSEENEKKCYSIGVDEYLCKPFDADIFKYRIRNILT 1242 Query: 120 IK 121 ++ Sbjct: 1243 LR 1244 >gi|229917076|ref|YP_002885722.1| response regulator receiver protein [Exiguobacterium sp. AT1b] gi|229468505|gb|ACQ70277.1| response regulator receiver protein [Exiguobacterium sp. AT1b] Length = 119 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D D +R L + G +V + +G SA++ + E + L+L D+ MP M G E Sbjct: 3 RMLIADDQDGIRTMLAQVFTNMGVDVDTAQDGISAWEFLEREQYDLVLLDMNMPRMFGHE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E D VM +T F A+ + KPF + ++ +V +L I Sbjct: 63 VLRRMREKPLDTPVMIMTAFGEEAVIEEVRRLGITAQFEKPFDIYGMIEKVKEVLKI 119 >gi|300314013|ref|YP_003778105.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076798|gb|ADJ66197.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL EDD DM R L++AL + G++V C +G SA +++ L++ D+ +P +DG+ Sbjct: 2 HILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGLH 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 L +R D V+ +T AV D NA L+KPF L +L Sbjct: 62 LLQRIRSQDIGTPVIVLTARGAVG---DRVVGLNAGADDYLAKPFDLDEL 108 >gi|226226850|ref|YP_002760956.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226090041|dbj|BAH38486.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 702 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 IL+ ED+ +RR + + L + GY+V +G A +++ P +L+LTD+VMP M G Sbjct: 588 ILVVEDEAGLRRLVSEILRRKGYQVRVAQDGTDALEQLSAGLAP-ALVLTDVVMPRMGGR 646 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA TE L V+F++G+ A PD + + KPF LV V +L Sbjct: 647 ELAEAITERGWQLPVLFMSGYQAGEELPDD---EEHAFIGKPFTPEALVTRVRNVL 699 >gi|146283971|ref|YP_001174124.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145572176|gb|ABP81282.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 718 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL EDD +R + + + G++VV+ A + + EPF +LLTD+ + M GI+ Sbjct: 599 KILFVEDDPTLRMLTGEVMMELGHDVVASETAEEALEALAREPFDVLLTDVGLAGMSGID 658 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 LAR A P L V+ +G+ A+N + + + KP+ +R+L++ + Sbjct: 659 LAREAVTRHPRLSVVIASGY---AVNASDVGVERLRTMLKPYDIHQVRELLDGI 709 >gi|311032032|ref|ZP_07710122.1| two-component response regulator [Bacillus sp. m3-13] Length = 124 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 61/116 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + QK+L+ +D +R L + K GY+ NG A D V + L+L D+ +P MD Sbjct: 2 VGQKLLIVDDQYGIRILLNEVFQKEGYQTFQAANGYQALDIVEKHSPDLVLLDMKIPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE+ +R ++ D++V+ +T + + + +S +KPF + ++ + V + Sbjct: 62 GIEILKRLKAINSDIQVIIMTAYGELDMIQESKDLGAITHFAKPFDIDEIRDAVRK 117 >gi|301061428|ref|ZP_07202198.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] gi|300444467|gb|EFK08462.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] Length = 471 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M KIL+ +D+ DM L + + + +E+V+ + A+++ R + F L++TD+ MP+M Sbjct: 1 MAGKILIVDDEKDMLTLLKRIISEETDHELVTETDPLKAFERFRADQFDLVITDLKMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI L ++DP++ + +T FA + ++ ++KPF ++ +++++ Sbjct: 61 DGIRLLEEIRKVDPEISTIILTAFATIETAVEAIRKGAYDYITKPFRRERILLTIDKVM 119 >gi|297538297|ref|YP_003674066.1| putative Fis family two component sigma54 specific transcriptional regulator [Methylotenera sp. 301] gi|297257644|gb|ADI29489.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Methylotenera sp. 301] Length = 456 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 6/113 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ + + L AGY V+ NNGA A + + L+++D+ MP MDG+ L Sbjct: 6 ILIVDDDKDILKLISMRLNAAGYATVTTNNGAEAMSAIMLQRPDLVISDLRMPAMDGMAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNA--KVLSKPFHLRDLVNEV 114 + P L V+ +T ++ PD+ NA + L+KPF + L+ +V Sbjct: 66 LDAIQQSHPSLPVIMLTAHGSI---PDAVNATQRGVFSFLTKPFDSQALLQQV 115 >gi|224418338|ref|ZP_03656344.1| signal-transduction regulatory protein [Helicobacter canadensis MIT 98-5491] gi|253827659|ref|ZP_04870544.1| transcriptional activator FlgR [Helicobacter canadensis MIT 98-5491] gi|253511065|gb|EES89724.1| transcriptional activator FlgR [Helicobacter canadensis MIT 98-5491] Length = 432 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+ + EDD +MR+ L ALG+ +EVVS N A K+ ++ L++TDI MP+MDGI Sbjct: 2 KLAIVEDDINMRKSLEIALGEYEEFEVVSFKNAKDALKKL-DDSIDLIITDINMPQMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E R EL+ + + ITG A + DS L+KPF + LV ++R Sbjct: 61 EFLR---ELNGRYEALIITGNATLNKAIDSIRLGVKDFLTKPFDIETLVAAIHR 111 >gi|225375337|ref|ZP_03752558.1| hypothetical protein ROSEINA2194_00962 [Roseburia inulinivorans DSM 16841] gi|225212826|gb|EEG95180.1| hypothetical protein ROSEINA2194_00962 [Roseburia inulinivorans DSM 16841] Length = 119 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+++ +D MR + L K GYE+ + NG A +K E L+L DI MPEMDGI Sbjct: 3 KVMICDDAAFMRMMIKDILTKNGYEIAAEAENGQKAVEKYPEAKPDLVLMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ LDP K++ + A+ ++ + KPF ++ V +++ Sbjct: 63 EALKKIKALDPGAKIIMCSAMGQQAMVIEAIQAGAKDFIVKPFQAERVLEAVKKVV 118 >gi|77359739|ref|YP_339314.1| sigma-54 dependent response regulator; regulation of polar flagellae expression [Pseudoalteromonas haloplanktis TAC125] gi|76874650|emb|CAI85871.1| putative Sigma-54 dependent response regulator; regulation of polar flagellae expression [Pseudoalteromonas haloplanktis TAC125] Length = 486 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 64/118 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ EDD +R LI L +G E V+ ++ A +++E FSL+++D+ M M Sbjct: 1 MSNTILVVEDDAGLREALIDTLEMSGIECVAADSAEQAMLLLKKESFSLVVSDVQMGAMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R PDL V+ +T +A + ++ ++KPF L+N V+R L Sbjct: 61 GLDLLRSIKLNYPDLPVLMMTAYATIDDAVEAMRLGAIDYMAKPFAPEVLLNMVSRYL 118 >gi|327482299|gb|AEA85609.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 719 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL EDD +R + + + G++VV+ A + + EPF +LLTD+ + M GI+ Sbjct: 600 KILFVEDDPTLRMLTGEVMMELGHDVVASETAEEALEALAREPFDVLLTDVGLAGMSGID 659 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 LAR A P L V+ +G+ A+N + + + KP+ +R+L++ + Sbjct: 660 LAREAVTRHPRLSVVIASGY---AVNASDVGVERLRTMLKPYDIHQVRELLDGI 710 >gi|253576991|ref|ZP_04854314.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843601|gb|EES71626.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 276 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 7/84 (8%) Query: 4 KILLAEDD----DDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+LLA+D+ + MR F+ + G EVV + +NG SA + + + +L+TD+ MP Sbjct: 3 KVLLADDEHLDLEGMRTFI--PWSELGMEVVGAVSNGFSACELMERQAIDILVTDVNMPH 60 Query: 59 MDGIELARRATELDPDLKVMFITG 82 M G+ELARRA + PD++V+F++G Sbjct: 61 MSGLELARRAMDRKPDVRVVFVSG 84 >gi|332703717|ref|ZP_08423805.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553866|gb|EGJ50910.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 697 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 4 KILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58 +IL +D+ D+ R +++ LG YEVV+ + A + R +P F L+LTD MP Sbjct: 573 RILFVDDEKALVDIGREILEGLG---YEVVARTSSVEALEAFRFQPDKFDLILTDQNMPN 629 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G+ELA +A + PD+ V+ TGF+ + +++ KP R L ++R L Sbjct: 630 LTGMELAEKALQTRPDVPVILCTGFSEIVSYSKVREMGIREIVMKPILKRQLAESIHRAL 689 Query: 119 T 119 T Sbjct: 690 T 690 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%) Query: 27 YEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPEM-DGIELARRATELDPDLKVMFI 80 +E+ CN G A D VR P+S+ L D+ MP DG+ A LDP+++++ + Sbjct: 42 FELTMCNQGDQAVDAVRGAMAEGRPYSVALLDVRMPPGPDGVWTAENIRALDPNIEIVIV 101 Query: 81 TGFAAV---ALNPDSNAPKNAKVLSKPFHLRDL 110 + ++ V LN P+ + KP H +L Sbjct: 102 SAYSDVNTRELNRRVTPPEKLLYIQKPLHPEEL 134 >gi|294626164|ref|ZP_06704770.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667549|ref|ZP_06732764.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599516|gb|EFF43647.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292602669|gb|EFF46105.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 540 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY ++S ++G A + + + P L TD++MP M Sbjct: 415 NETILVVEDKQDVAVVARMFLENAGYRILSASSGREAMEILEKNPDVDALFTDLIMPGGM 474 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V++KP+ ++L+ + LL Sbjct: 475 NGVMLAREARRMLPKVKILLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLL 533 >gi|108563737|ref|YP_628053.1| response regulator [Helicobacter pylori HPAG1] gi|107837510|gb|ABF85379.1| response regulator [Helicobacter pylori HPAG1] Length = 213 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCVFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|270208662|ref|YP_003329433.1| Fix-L-related histidine kinase [Sinorhizobium meliloti] gi|76880936|gb|ABA56106.1| Fix-L-related histidine kinase [Sinorhizobium meliloti] Length = 528 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ IL+ EDD +RR ++ L AGY V+ G A + E P SL+ TD++MP M Sbjct: 413 HETILVVEDDARVRRVVVARLRAAGYSVIEAEAGTKALQLLAEHPEVSLVFTDMIMPGGM 472 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG ELA L P +K++F +G+A P + L KP+ RDL + LL Sbjct: 473 DGGELAEHVRALRPHVKMLFTSGYA----EPSAVGRAVGSWLQKPYTARDLALRLRELL 527 >gi|39995260|ref|NP_951211.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39982022|gb|AAR33484.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298504265|gb|ADI82988.1| response receiver histidine kinase [Geobacter sulfurreducens KN400] Length = 371 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ +R KAL GY V+ +G A ++LTD++MP+++GI Sbjct: 14 KSILVVDDESVIRDLCAKAL--KGYRVLQAGDGEEALRLFERGGIDVILTDVMMPKLNGI 71 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR E++P L V+ +TG+A + ++ ++KP +L L V+R L Sbjct: 72 ELLRRLKEMEPTLVVIVMTGYAEKDIILNALKADADDFITKPLNLLQLKTAVDRAL 127 >gi|90426360|ref|YP_534730.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90108374|gb|ABD90411.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 720 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++LL +DD +R L + G V+ +G +A D + +P F L++ D MP M Sbjct: 593 RRLLLVDDDSAVRDVTAAMLREIGCVVIEAGSGGAALDILERDPAPFDLMVIDFAMPGMT 652 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+AR A P + ++FITG+A +A N ++A ++ KPF +L+ ++ R L Sbjct: 653 GAEVAREAQLRRPGMPMIFITGYADLA--ALQNIGEDA-IVQKPFRDDELLRKIGRAL 707 >gi|325262223|ref|ZP_08128961.1| putative response regulator receiver domain protein [Clostridium sp. D5] gi|324033677|gb|EGB94954.1| putative response regulator receiver domain protein [Clostridium sp. D5] Length = 525 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALG--KAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M K+L+ +D+ +R + K + K G +V S NG +A D + E +L+TDI MP Sbjct: 1 MEIKLLVVDDEVKIRAGIEKGISWKKLGICKVQSAPNGVAALDIIHTERIDILITDIRMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDG+ELAR+A E+ ++ ++ ++GF+ + + L KP +++L + V+ + Sbjct: 61 GMDGLELARKAKEVQENIHIIILSGFSEFEYAKQAISIGVKDYLLKPIKVKELTDNVSGI 120 Query: 118 L 118 + Sbjct: 121 V 121 >gi|295693262|ref|YP_003601872.1| response regulator [Lactobacillus crispatus ST1] gi|295031368|emb|CBL50847.1| Response regulator [Lactobacillus crispatus ST1] Length = 180 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ + R L A+ AGY+V +NG A + +E + +++ DI+MP MDGI Sbjct: 2 KILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ E ++ +T A V DS A L+KPF L++L+ Sbjct: 62 ALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 226 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD FL KALG+AG++ +G +A+D F +L+ D ++P++DG+ Sbjct: 2 RVLIVEDDRTAADFLAKALGEAGFQTEIAGDGEAAFDSATSSKFDVLIVDRMLPKLDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L R E V+ ++ AV L KP+ L +LV V L Sbjct: 62 LVERLRERGDTTPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEAL 115 >gi|330960931|gb|EGH61191.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 677 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + ++ A + + LL++D+ +P M+G Sbjct: 559 ETVLIVEDDSAVRALVSEVLSELGYSFIEASDAPGAVPILESGQRIDLLISDVGLPGMNG 618 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A + ++++KPF L ++V ++ Sbjct: 619 RQLAEIARQLRPELKVLFITGYAEHSAVRAGFLETGMQLITKPFAFDHLTSKVREMI 675 >gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 58/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+I + +DD+ + L ++L GYEV N+G + + LL+ D++MP+MD Sbjct: 1 MRQRIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GWEVCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRR 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|220917934|ref|YP_002493238.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955788|gb|ACL66172.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 475 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 45/80 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDD+ R L + LG AGY V + G A + P +L D+VMPE DG E+ Sbjct: 7 VLVIEDDDEARAPLCEFLGAAGYRVRAARGGNEALADLGSAPAGAVLLDLVMPEPDGFEV 66 Query: 65 ARRATELDPDLKVMFITGFA 84 RR E DP L V+ ++ + Sbjct: 67 LRRVRERDPALPVIVLSALS 86 >gi|197122275|ref|YP_002134226.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196172124|gb|ACG73097.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 464 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 53/83 (63%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +R L L K GY V +G +A +K++ E +S+L+ D+ MP MDG++ Sbjct: 7 RILVVDDEEIVRESLGGWLEKDGYSVHVAADGFAAVEKLKAERWSILIVDLKMPGMDGLQ 66 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + A +L P+L V+ +T +A V Sbjct: 67 VLEEAKKLQPELAVVIMTAYATV 89 >gi|163786044|ref|ZP_02180492.1| response regulatory protein, sigma 54 related [Flavobacteriales bacterium ALC-1] gi|159877904|gb|EDP71960.1| response regulatory protein, sigma 54 related [Flavobacteriales bacterium ALC-1] Length = 387 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L+K L + Y+V +G + +K++++ F L+L DI MP+MDG Sbjct: 3 KILIIEDEAAIRRVLVKILSEESDTYQVEEAEDGLAGIEKIKKDDFDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +E+ ++ P++ ++ I+G + ++ +SKP L L+N V Sbjct: 63 VEVLEAVKKIKPEIPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTV 115 >gi|148655241|ref|YP_001275446.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567351|gb|ABQ89496.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 264 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 53/85 (62%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++ILL +D+ ++R L L +AGY+V + + GA A + E+ F LL+ D+ MP +DG Sbjct: 4 SERILLVDDEANIRLTLGAMLTRAGYDVTTASGGAEAIALLEEQAFDLLIIDLKMPGVDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 +++ A PD+ ++ +TG ++ Sbjct: 64 MQVVTAARARHPDVPIIILTGHGSL 88 >gi|313675771|ref|YP_004053767.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312942469|gb|ADR21659.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 227 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ + L ++L G++V C +G +A+ + + + LL+ D++MP++DG Sbjct: 6 QLLLAEDEPSLGLILKESLESRGFKVDHCEDGEAAWKCYQAKEYDLLILDVMMPKLDGFS 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 LA++ + D + ++F+T + + + KPF + +L+ V LL K+ Sbjct: 66 LAQKVRKADGYIPIIFLTAKSTTNDVVEGFEKGGNDYIKKPFSMEELIVRVKALLERKS 124 >gi|332654953|ref|ZP_08420695.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332516296|gb|EGJ45904.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 229 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDG 61 KILL EDD D+ + + +AL K GY V CN+G S+ Y + + L + D ++P +DG Sbjct: 3 KILLMEDDLDLCQSIQQALKKEGYSVDCCNDGESSMIYALNTDYGYDLAIVDRMLPIIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + + + V+ ITG +A+ D L KPFH+R+L+ V L Sbjct: 63 LTIIKAMRRKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRAL 118 >gi|300812623|ref|ZP_07093036.1| response regulator receiver domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496404|gb|EFK31513.1| response regulator receiver domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 222 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++ Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + +M +T + + L+KPF L++L+ Sbjct: 62 AVKEIRATGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELL 109 >gi|317130175|ref|YP_004096457.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475123|gb|ADU31726.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 230 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ +MR+ L + +++ +NG A+ KV+E + L++ DI+MPE+D Sbjct: 1 MEAKILLVDDEQEMRKLLKVCFSASPFQLDEASNGDEAFLKVQENNYDLIILDIMMPEID 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL ELD ++ V+ +T + + KPF ++LV V +L Sbjct: 61 GFELLNMLRVELDTEIPVILLTALGDTERVVEGLKRGADDYVVKPFEPKELVARVESVL 119 >gi|296120969|ref|YP_003628747.1| sigma-54 factor interaction domain-containing protein [Planctomyces limnophilus DSM 3776] gi|296013309|gb|ADG66548.1| sigma-54 factor interaction domain-containing protein [Planctomyces limnophilus DSM 3776] Length = 449 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ ED++ +R L++ L GY+ ++ N A+A RE F + + D+ +P+ DG Sbjct: 4 TRSVLIVEDEEIIRTSLLEFLTDEGYQAMAAPNVATALKLAREREFQVAVCDVQLPDGDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R+ ++ P + + IT +A V ++ L KP DL N++ RL + Sbjct: 64 LALLRKLQQITPGVSGLIITAYATVENAVEAFKSGAFDYLVKPVIFDDLANKLARLFQYR 123 Query: 122 N 122 + Sbjct: 124 D 124 >gi|188584894|ref|YP_001916439.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349581|gb|ACB83851.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 239 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+K+L+ +D+ ++R L L GYE+ NG A +K+R + + L+L D+ +P ++ Sbjct: 1 MNKKLLIVDDEKNIRMTLKNCLSYEGYELEIALNGEEALEKLRTQDYDLVLLDLKLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 G+++ + + D+KV+ +T + V ++ ++KPF +R LVN+V Sbjct: 61 GLQVLEKVRDEGRDVKVIMMTAYGTVERAVNAMKLGAIDFINKPFSPNQIRALVNDV 117 >gi|326335904|ref|ZP_08202081.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691868|gb|EGD33830.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 241 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 48/82 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N+KILL EDD + L L +G++V NG +DK R++P+ + + D++MP D Sbjct: 4 VNKKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPYDMCILDVMMPYKD 63 Query: 61 GIELARRATELDPDLKVMFITG 82 G LA+ E + + ++F+T Sbjct: 64 GFTLAKEIREKNEKVPIIFLTA 85 >gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396] gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396] Length = 229 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G E+ RR + + + +M +T Sbjct: 61 GFEVTRRLQQ-EKNTYIMMMTA 81 >gi|218782909|ref|YP_002434227.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218764293|gb|ACL06759.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 444 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ + + + K L KA YEV ++ A +++ + +SLL++DIVMPEM+G+ Sbjct: 5 QRILVVDDEPGILQNVTKILSKAEYEVFQASSAKEALEEMAKRSYSLLISDIVMPEMNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P +V+ +T +A+ + L KPF LR LV+ Sbjct: 65 ELLKMVKNQWPLTQVLMMTAYASTETAVKAIRLGALDYLPKPFTPDELRALVD 117 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + + K L K Y V A +KV + + +++ D+ MP + G+EL Sbjct: 327 ILVVDDEVAVNNNIRKILKKGQYTVDQATTRDEALEKVSKGFYRVIILDLKMPGVVGLEL 386 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 ++ P+ K++ ITG+A++ +++ + KPF +R V + +RL Sbjct: 387 LEAVHKMQPNAKIVIITGYASIETAVETSRLGAMLYVPKPFTPAEIRTAVEKASRL 442 >gi|89901514|ref|YP_523985.1| Fis family two component sigma-54 specific transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346251|gb|ABD70454.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodoferax ferrireducens T118] Length = 474 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 63/118 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D++ + R ++ L Y V S G A KV E + +L+ D++MP+MD Sbjct: 1 MSARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ + E P++ V+ +TG + + + LSKPF +L VNR L Sbjct: 61 GLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRAL 118 >gi|16080354|ref|NP_391181.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221311245|ref|ZP_03593092.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315572|ref|ZP_03597377.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320487|ref|ZP_03601781.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324771|ref|ZP_03606065.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|321312847|ref|YP_004205134.1| two-component response regulator [Bacillus subtilis BSn5] gi|22001558|sp|O32192|CSSR_BACSU RecName: Full=Transcriptional regulatory protein CssR gi|2635798|emb|CAB15291.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|2832828|emb|CAA11752.1| putative transcriptional regulatory protein, YvqA [Bacillus subtilis] gi|320019121|gb|ADV94107.1| two-component response regulator [Bacillus subtilis BSn5] Length = 225 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 11/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED+D++ L K L G+ + S G A K+ P L + DI++P+ D Sbjct: 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKKMTPSP-HLWILDIMLPDTD 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G L + DPD+ V+FI+ A + L SN +SKPF R+L+ V Sbjct: 60 GYTLIKEIKAKDPDVPVIFISARDADIDRVLGLELGSN-----DYISKPFLPRELIIRVQ 114 Query: 116 RLLTI 120 +LL + Sbjct: 115 KLLQL 119 >gi|297182588|gb|ADI18747.1| response regulator containing chey-like receiver, AAA-type ATPase, and DNA-binding domains [uncultured gamma proteobacterium HF4000_36I10] Length = 450 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MNQ IL+ +D+ D+R L L + GY S ++ ASAY + + F+L LTD+ +P+ Sbjct: 1 MNQHNPILIIDDEPDIRELLELTLMRMGYNTHSADSLASAYRLLDKHTFALCLTDMKLPD 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ E D+ V IT F +V L +S +SKP L L N V + Sbjct: 61 GSGLEIIHHLQERPEDIPVAVITAFGSVDLATESLKAGAFDFISKPIDLDRLRNLVRNAV 120 Query: 119 TIKN 122 +++ Sbjct: 121 SLEG 124 >gi|237800710|ref|ZP_04589171.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023569|gb|EGI03626.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 555 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + SA + + LL++D+ +P M+G Sbjct: 431 ETVLIVEDDPAVRALVSEVLSELGYLYIEAGEAMSAVPILESGQRIDLLISDVGLPGMNG 490 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ + Sbjct: 491 RQLADIARQLRPELKVLFITGYAEHAAVRGGFLETGMQLITKPFAFDHLTSKVREMIQAR 550 >gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1383 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILLA+D+ DMR ++ + L + YEV + +G +A + +R P L+L+D++MP ++G Sbjct: 629 NGRILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHPPDLVLSDVMMPRLNG 687 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL + R L +L ++ ++ A + L KPF R+L+ + L Sbjct: 688 FELLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFSARELLARIEATLK 747 Query: 120 I 120 + Sbjct: 748 M 748 >gi|146340912|ref|YP_001205960.1| putative histidinase kinase-response regulator hybrid protein [Bradyrhizobium sp. ORS278] gi|146193718|emb|CAL77735.1| putative histidinase kinase-response regulator hybrid protein [Bradyrhizobium sp. ORS278] Length = 599 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 + ILL ED+ R L +AGY V++ NG AY +++ + L+L+D+VMP++ Sbjct: 470 QETILLVEDNYQALRATELMLQRAGYAVLTMTNGDEAYRFLQQCDQAIDLVLSDVVMPQL 529 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK--NAKVLSKPFHLRDLV 111 G ELA+R P+L V+F+TG++ + ++ + +V+ KPF +L+ Sbjct: 530 SGPELAQRLAVTHPELPVVFMTGYSNDPILGEAGDHRIGRRRVILKPFKREELL 583 >gi|148253649|ref|YP_001238234.1| chemotaxis protein CheY [Bradyrhizobium sp. BTAi1] gi|146405822|gb|ABQ34328.1| Chemotaxis protein cheY [Bradyrhizobium sp. BTAi1] Length = 121 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL +D MR + L KAG++V +G +A + + F L++TD+ MP MD Sbjct: 1 MTKRILAVDDSKTMRDMVSFTLKKAGFDVAEAEDGKAALNVLTGGKFDLIITDLNMPNMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L + RA + ++ +T + A D A L KPF+ L+ VNR+ Sbjct: 61 GISLIKSVRAGSQHRTVPILILTTESDGAKKADGKAAGATGWLVKPFNPDQLIATVNRV 119 >gi|308185114|ref|YP_003929247.1| response regulator [Helicobacter pylori SJM180] gi|308061034|gb|ADO02930.1| response regulator [Helicobacter pylori SJM180] Length = 213 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|284123129|ref|ZP_06386901.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Poribacteria sp. WGA-A3] gi|283829304|gb|EFC33708.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Poribacteria sp. WGA-A3] Length = 480 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D+ MR ++ AL GY V +NG K++ + L++TD+ MP D Sbjct: 1 MTRSVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R E + +V+ IT +V + ++KPF + +L+ V+R + Sbjct: 61 GLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATKV 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD + FL L K GYEV NG A +K+ E F L+L DI+MP++D Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G E +R L ++ ++F+T Sbjct: 61 GFEAIKRIRRL-TNIPIIFLTA 81 >gi|153006247|ref|YP_001380572.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029820|gb|ABS27588.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 455 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 52/86 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ +++ L +AL GY V + + G A DK+ P ++ D+ MP++D Sbjct: 1 MAATILVVDDEKNIQLTLSRALSMEGYVVEAASGGREALDKIAALPVDAVVMDVRMPDLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+E+ RRA E PDL V+ ++G ++ Sbjct: 61 GLEVLRRARETRPDLPVVIMSGHGSL 86 >gi|115377654|ref|ZP_01464848.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] gi|310824446|ref|YP_003956804.1| response regulator receiver domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115365316|gb|EAU64357.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] gi|309397518|gb|ADO74977.1| Response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] Length = 571 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 49/83 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+ +R L L + G++V + NG +A + +R F L +TD+ MP MDG+ Sbjct: 6 SVLVIDDEPGIRDMLSFELSQEGFDVETAENGMAAVETLRRRKFDLAITDLKMPGMDGVA 65 Query: 64 LARRATELDPDLKVMFITGFAAV 86 LDPD++V+ TG+A+V Sbjct: 66 TVEALRALDPDIEVIVATGYASV 88 >gi|303326573|ref|ZP_07357016.1| sigma-54 dependent DNA-binding response regulator [Desulfovibrio sp. 3_1_syn3] gi|302864489|gb|EFL87420.1| sigma-54 dependent DNA-binding response regulator [Desulfovibrio sp. 3_1_syn3] Length = 523 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 55/104 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ R L + L G+E V G+ A + ++ + L+LTD++MP+M G+E Sbjct: 7 KILVVDDEAIARANLARVLAHDGHETVQAGGGSIALEMLQHGEYDLVLTDLIMPDMGGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 L R P +V+ +TG+ V ++ L+KP+ L Sbjct: 67 LLERVRARFPGTEVIVVTGYPMVETAVEAMRKGAYHYLAKPYQL 110 >gi|291485788|dbj|BAI86863.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 225 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 11/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED+D++ L K L G+ + S G A K+ P L + DI++P+ D Sbjct: 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKKMTPSP-HLWILDIMLPDTD 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G L + DPD+ V+FI+ A + L SN +SKPF R+L+ V Sbjct: 60 GYTLIKEIKAKDPDVPVIFISARDADIDRVLGLELGSN-----DYISKPFLPRELIIRVQ 114 Query: 116 RLLTI 120 +LL + Sbjct: 115 KLLQL 119 >gi|239617404|ref|YP_002940726.1| response regulator receiver modulated metal dependent phosphohydrolase [Kosmotoga olearia TBF 19.5.1] gi|239506235|gb|ACR79722.1| response regulator receiver modulated metal dependent phosphohydrolase [Kosmotoga olearia TBF 19.5.1] Length = 365 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD+ ++++ L K+ GYEV S NG A +K+ E+ F ++++DI+MPEMDG +L Sbjct: 3 ILAVDDNKENIYMLETLFKSYGYEVESSQNGVEALEKLAEQDFDVVISDILMPEMDGFQL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD 91 RR ++D LK + + A +P+ Sbjct: 63 CRR-VKMDDRLKEIPFILYTAAYTDPE 88 >gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 226 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED++++R + L +EVV+ NG A +E+ F L++ D+++PE+DG + Sbjct: 2 RILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGFQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + D ++ V+F+T AV L+KPF L +L+ +N L+ Sbjct: 62 ICEQIRLTDMEVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLI 116 >gi|218507665|ref|ZP_03505543.1| probable two-component response regulator protein [Rhizobium etli Brasil 5] Length = 80 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 48/79 (60%) Query: 41 KVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV 100 K+++ + LLL+DI MP MDGIELA +A + P LK++ +TG+A D A K V Sbjct: 1 KLKDGVYDLLLSDIRMPVMDGIELAHQAKDAFPGLKILLMTGYAEQRERADDLAEKIIDV 60 Query: 101 LSKPFHLRDLVNEVNRLLT 119 ++KPF L D+ V R L Sbjct: 61 VAKPFALPDIRKAVARALV 79 >gi|168700039|ref|ZP_02732316.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 643 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ ILL ED+D +R AL GY V+S A A P LL+TD+VMP Sbjct: 521 SETILLVEDEDPVRNIARLALDVQGYTVLSAGGAAEALKVAAAHPGRIDLLVTDVVMPNA 580 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL + PD+K++F++G+ A+ PD + KPF L +V +L Sbjct: 581 GGRELGDALRAVRPDVKILFMSGYTDEAVVPDGAFGSGEAFIQKPFSPIGLARKVRAVL 639 >gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GYE+V NNG + + + L+L DI++PE++G+E Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR D+ ++ +T AV ++KPF + +L+ + R++ Sbjct: 63 VLRRLRR-TSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|188992002|ref|YP_001904012.1| Sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. campestris str. B100] gi|167733762|emb|CAP51967.1| Sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. campestris] Length = 944 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDI-VMPEM 59 ++ +LL ED+ +R + + L AGY V+ +G++A ++++ E LL+TD+ + + Sbjct: 818 SKTVLLVEDEAPIRILICEVLTDAGYRVIDVADGSTAVERLQSAEVIDLLVTDVGLTGAL 877 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A P L V+F+TG+AA A +VL+KPF DL V +LL Sbjct: 878 NGRQVADAGRLQRPALPVLFVTGYAASAAVGAGQLETGMEVLTKPFLAADLERRVGQLL 936 >gi|197122292|ref|YP_002134243.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196172141|gb|ACG73114.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 461 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 62/116 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R + + L + GYEV+S +G A + V P ++L D+ +P +DG++ Sbjct: 7 RILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLPGIDGVQ 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +RA L P++ V+ ++ + V + ++ L KPF + L V R L Sbjct: 67 TLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERALA 122 >gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium] Length = 220 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDDD + + L +AGY+V +C +G AY K E + L++ DI++P M+ Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G EL R RA D ++ +T AL+ D N + ++KPF ++ L+ Sbjct: 61 GHELLREFRAKN---DTPILMMT-----ALSDDENQIRAFDAEADDYVTKPFKMQILLKR 112 Query: 114 VNRLL 118 V LL Sbjct: 113 VEALL 117 >gi|134299369|ref|YP_001112865.1| two component sigma-54 specific Fis family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052069|gb|ABO50040.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum reducens MI-1] Length = 448 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D++ M L +ALG GY+V++ G + E SL++ D+ MP++ Sbjct: 1 MIPRILVIDDEERMCWALERALGHEGYQVITATRGLRGIELAHETEPSLVILDLKMPDIT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ ++ ++ V+ IT + ++ ++KPF L +L +V + L + Sbjct: 61 GIEVLKKIKSINSNIPVIMITAHGTIETAIEAMKFGATDYITKPFKLDELKVQVKQALHL 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|296331221|ref|ZP_06873694.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675901|ref|YP_003867573.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151672|gb|EFG92548.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414145|gb|ADM39264.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 225 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 11/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED+D++ L K L G+ + S G A K+ P L + DI++P+ D Sbjct: 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKKMTPSP-HLWILDIMLPDTD 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G L + DPD+ V+FI+ A + L SN +SKPF R+L+ V Sbjct: 60 GYTLIKEIKAKDPDVPVIFISARDADIDRVLGLELGSN-----DYISKPFLPRELIIRVQ 114 Query: 116 RLLTI 120 +LL + Sbjct: 115 KLLQL 119 >gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293] gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293] Length = 242 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRIRE-KHSLPIMFLSA 92 >gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis] gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104] gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68] gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium] gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842] gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi] gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi] gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi] gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245] gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium] gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis] gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104] gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium] gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68] Length = 219 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDDD + + L +AGY+V +C +G AY K E + L++ DI++P M+ Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G EL R RA D ++ +T AL+ D N + ++KPF ++ L+ Sbjct: 61 GHELLREFRAKN---DTPILMMT-----ALSDDENQIRAFDAEADDYVTKPFKMQILLKR 112 Query: 114 VNRLL 118 V LL Sbjct: 113 VEALL 117 >gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides fragilis NCTC 9343] gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides fragilis NCTC 9343] gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] Length = 224 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+ V N+G + ++ +R+E F LL+ DI+MP+M+G+E Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQEAFDLLILDIIMPKMNGLE 62 Query: 64 LAR----RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + L P + + + + DS A L KPF ++L + +L Sbjct: 63 LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGAD---DYLVKPFSFQELEARIKAIL 118 >gi|325684242|gb|EGD26417.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 222 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++ Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + +M +T + + L+KPF L++L+ Sbjct: 62 AVKEIRATGDKTYIMMLTAKSEIDDRVTGLDVGADDYLTKPFSLKELL 109 >gi|320355087|ref|YP_004196426.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123589|gb|ADW19135.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 777 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62 IL+ +D+ + +L + L GY V SC + AY R+ F L+LTD+ MP M G+ Sbjct: 648 ILVVDDEQPIAFYLEQVLSHLGYTVTSCRSSEEAYRLFLSRKGLFDLVLTDMGMPGMTGL 707 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA ++ D+ V+ TG++ + A ++KPF + EV R+L Sbjct: 708 ELATALKKIREDIPVILCTGYSEQVTADNYEQMGLAGFVAKPFSAESVSREVTRIL 763 >gi|326319486|ref|YP_004237158.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376322|gb|ADX48591.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 748 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 2/105 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +LL +D+ +R + ++L + GY V+ +G SA + +R LLLTD+ +P M+G Sbjct: 631 VLLVDDEPAVRSTVAESLREQGYRVLEAEDGPSALEMLRGAGRLDLLLTDVGLPGGMNGR 690 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 ++A L P L V+FITG+A A+ D + VL+KPF L Sbjct: 691 QVADAGRALRPGLPVLFITGYAEQAVIGDRDLDPGMGVLTKPFDL 735 >gi|239626893|ref|ZP_04669924.1| two-component response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517039|gb|EEQ56905.1| two-component response regulator [Clostridiales bacterium 1_7_47FAA] Length = 529 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 5/115 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEV----VSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 ++L+A+DD +RR L K + Y + V+C+ G A ++E LLLTDI MP+M Sbjct: 3 RVLIADDDAIIRRGLKKTIDWESYGMEIVGVACD-GQEALSMLKELAPHLLLTDIKMPQM 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIEL + A L PD++V+ +T + ++ K L KP +L+ V Sbjct: 62 SGIELMKEARILYPDIQVILLTAYEDFEYAKEAIKHKACDYLLKPLAREELLESV 116 >gi|209884541|ref|YP_002288398.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans OM5] gi|209872737|gb|ACI92533.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans OM5] Length = 846 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL ED+D +R + L GY V+ NGA A +++ E L+++D+VMPEMDG Sbjct: 729 ILLVEDEDGLRSLNARGLRSRGYTVIEAGNGAEALEELEAEGGAVDLVVSDVVMPEMDGP 788 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + +P+LK++F++G+A A + L KPF L LV+ V + Sbjct: 789 TMLAAMRKQNPELKIIFVSGYAEDAFEKSLPEGEQFAFLPKPFTLSQLVSAVKETM 844 >gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta] Length = 219 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDDD + + L +AGY+V +C +G AY K E + L++ DI++P M+ Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G EL R RA D ++ +T AL+ D N + ++KPF ++ L+ Sbjct: 61 GHELLREFRAKN---DTPILMMT-----ALSDDENQIRAFDAEADDYVTKPFKMQILLKR 112 Query: 114 VNRLL 118 V LL Sbjct: 113 VEALL 117 >gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 245 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ ++ F+ + L + G+ V C++G + + ++EEPF L++ DI+MP+++G+E Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 64 LARRATEL-DPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ V+ +T + D+ A L KPF ++L + LL Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGAD---DYLVKPFSFQELEARIKALL 139 >gi|152977522|ref|YP_001377039.1| response regulator receiver protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026274|gb|ABS24044.1| response regulator receiver protein [Bacillus cytotoxicus NVH 391-98] Length = 122 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVILDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E++ D+KV+ +T + + + ++ +KPF + ++ V + + Sbjct: 61 GIEILKHVKEINADIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNEIAV 120 Query: 121 KN 122 ++ Sbjct: 121 ES 122 >gi|114777419|ref|ZP_01452416.1| sigma-54 dependent DNA-binding response regulator [Mariprofundus ferrooxydans PV-1] gi|114552201|gb|EAU54703.1| sigma-54 dependent DNA-binding response regulator [Mariprofundus ferrooxydans PV-1] Length = 157 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 55/103 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD+ + L + L +AGY VV G +A +++ F L+L+D+VMP DG+ L Sbjct: 1 MLLAEDDEALASLLEEYLLEAGYSVVVYKRGDTALAALQQGCFDLVLSDVVMPGADGLSL 60 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 E D V+ +TG++ + + +SKPF L Sbjct: 61 LAYVQEQKLDTLVLLMTGYSGIEDALSAVEQGAYDFVSKPFQL 103 >gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 232 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|330900711|gb|EGH32130.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 637 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + LG+ GY + A A + LL++D+ +P M+G Sbjct: 518 ETVLIVEDDPAVRALVSEVLGELGYIFIEAGEAADAVPILESGRRIDLLISDVGLPGMNG 577 Query: 62 IELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A+ ++++KPF L ++V ++ Sbjct: 578 RQLAEIARQLRPELKVLFITGYAEHAAVRRRGFLDTGMQLITKPFAFDHLTSKVREMI 635 >gi|322420329|ref|YP_004199552.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126716|gb|ADW14276.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 896 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59 ++ ILLAED++ +R L L +AGY+V++ +G A E S LLL D+VMP++ Sbjct: 774 SETILLAEDNELVRNLLATVLTEAGYQVMAATDGEEAVRSFAEHAGSIDLLLFDLVMPKL 833 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G R +KV+FI+G+ + ++A +L KP R+L+ V +L Sbjct: 834 GGKGARDRIHRTHAGVKVIFISGYEPEPARDQAGTAEDACLLYKPVAPRELLKTVREVL 892 >gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 224 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ ++ F+ + L + G+ V C++G + + ++EEPF L++ DI+MP+++G+E Sbjct: 3 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 62 Query: 64 LARRATEL-DPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ V+ +T + D+ A L KPF ++L + LL Sbjct: 63 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGAD---DYLVKPFSFQELEARIKALL 118 >gi|237654032|ref|YP_002890346.1| PAS/PAC sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237625279|gb|ACR01969.1| PAS/PAC sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 714 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 3/107 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE- 58 ++ +LL ED+ ++R+ + L G+ V+ +G A ++ + +LL++D VMP Sbjct: 558 LDGPVLLVEDEPEVRKVVRMQLTSLGHVVIEAADGVEALGLLQNVDDIALLVSDTVMPGG 617 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + G ELARRA L P L ++ +TG+A+ A P P + L KPF Sbjct: 618 IGGRELARRARTLRPQLPILLVTGYASEA-TPTDELPADVPTLRKPF 663 >gi|218781240|ref|YP_002432558.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762624|gb|ACL05090.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 914 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 + ILL ED+ +R L + GY V+ +G A + ++E+ P +LLLTD+VMPEM Sbjct: 793 QETILLVEDNPQVRNLARLVLKRRGYNVLGAADGPEALEMIKEQAHPINLLLTDVVMPEM 852 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L ++ + D +KV++++G+ + + + KPF + L +V ++L Sbjct: 853 SGRDLFKQLSG-DSKIKVLYMSGYDDEMIAKEGVLENGVDFIQKPFTGQALAAKVRQVL 910 >gi|91202686|emb|CAJ72325.1| similar to two component sensor histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 553 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 62/111 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + + L L GY VV +NGA A D ++++ F L+L D+ MP++ G ++ Sbjct: 438 ILIVDDEATIGKVLSSFLTGEGYNVVFIDNGAGALDLLKKDEFDLVLCDLGMPDISGWDI 497 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ K+ ITGF + + N K V++KPF L +L++ +N Sbjct: 498 MNVIADMAKKPKIGIITGFLNASDDFPGNKIKADFVINKPFELDNLLHSIN 548 >gi|86158414|ref|YP_465199.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774925|gb|ABC81762.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 460 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R + + L + GYEV+S +G A + V P ++L D+ +P +DG++ Sbjct: 7 RILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLPGIDGVQ 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +RA L P++ V+ ++ + V + ++ L KPF + L V R L Sbjct: 67 TLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERAL 121 >gi|86358575|ref|YP_470467.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Rhizobium etli CFN 42] gi|86282677|gb|ABC91740.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Rhizobium etli CFN 42] Length = 448 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + L +DD D+RR + L AG+ V + + +A D++ + ++TDI MPE+D Sbjct: 3 MGIPVALIDDDRDLRRATAQTLELAGFSVSAYDGAKAALDELPADFAGPVVTDIRMPEID 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G++L +DPDL V+ +TG + + + ++KPF LV V R Sbjct: 63 GLQLFATLKGMDPDLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFPADRLVQSVRR 118 >gi|328861007|gb|EGG10111.1| hypothetical protein MELLADRAFT_115552 [Melampsora larici-populina 98AG31] Length = 2085 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+DDMR F+ L + Y V ++G AY + L+++D++MP ++G EL Sbjct: 1257 ILIADDNDDMRSFVRSVLSRY-YTVAEASDGLEAYHWAKAHHPDLVVSDVMMPALNGFEL 1315 Query: 65 ARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R + DPD + V+ ++ A + + A L KPF ++LV +N L + Sbjct: 1316 LKR-LKTDPDTAGISVILLSAHAGSEIRIEGLAEGADDYLVKPFEAKELVARINTHLQL 1373 >gi|254719181|ref|ZP_05180992.1| nitrogen regulation protein NtrC [Brucella sp. 83/13] gi|265984178|ref|ZP_06096913.1| nitrogen metabolism transcriptional regulator [Brucella sp. 83/13] gi|306838174|ref|ZP_07471030.1| nitrogen regulation protein NR(I) [Brucella sp. NF 2653] gi|306841844|ref|ZP_07474526.1| nitrogen regulation protein NR(I) [Brucella sp. BO2] gi|264662770|gb|EEZ33031.1| nitrogen metabolism transcriptional regulator [Brucella sp. 83/13] gi|306288071|gb|EFM59468.1| nitrogen regulation protein NR(I) [Brucella sp. BO2] gi|306406764|gb|EFM62987.1| nitrogen regulation protein NR(I) [Brucella sp. NF 2653] Length = 491 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKMRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|238026723|ref|YP_002910954.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237875917|gb|ACR28250.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 1248 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ DMR +L LG A Y V + +GA D R E L+LTD++MP +DG Sbjct: 611 RILVADDNADMRHYLNSLLGGA-YRVEAVADGARLLDAARRERPDLVLTDVMMPNLDGFA 669 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R A DP L+ + + +A A A +A V L KPF R+L+ + +L Sbjct: 670 V-RGALREDPRLREVPVILLSARAGEEARIAALDAGVDDYLVKPFSARELLARIGAVL 726 >gi|228473133|ref|ZP_04057890.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC 33624] gi|228275715|gb|EEK14492.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC 33624] Length = 241 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 48/82 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N+KILL EDD + L L +G++V NG +DK R++P+ + + D++MP D Sbjct: 4 VNKKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPYDMCILDVMMPYKD 63 Query: 61 GIELARRATELDPDLKVMFITG 82 G LA+ E + + ++F+T Sbjct: 64 GFTLAKEIREKNEKVPIIFLTA 85 >gi|254563378|ref|YP_003070473.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254270656|emb|CAX26660.1| putative hybrid histidine kinase with multiple PAS and a response regulator receiver domain [Methylobacterium extorquens DM4] Length = 775 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 +IL+ ED+ ++ RF + L + G++ V N +A ++ E PF + +D+VMP M G Sbjct: 651 RILVVEDNLEVGRFCTQILEELGHQPVWAENAEAALVELERTETPFEAVFSDVVMPGMGG 710 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I LAR E PDL V+ +G++ V D++ ++L KP+ ++L Sbjct: 711 IALARILRERYPDLPVVLTSGYSHVLAQDDAHG---FELLRKPYSAQEL 756 >gi|212704721|ref|ZP_03312849.1| hypothetical protein DESPIG_02784 [Desulfovibrio piger ATCC 29098] gi|212671848|gb|EEB32331.1| hypothetical protein DESPIG_02784 [Desulfovibrio piger ATCC 29098] Length = 454 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 57/116 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +DDD R L L GY V +G A + VR +P+ ++LTD+ M MD Sbjct: 1 MNTSILVVDDDDAHRGMLRMMLQAWGYSVDEAADGDLAVEAVRAKPYDVVLTDVRMGRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GI R + +P L V+ +T +++V D+ L+KP L + R Sbjct: 61 GIHALRGILDYNPALPVVLMTAYSSVETAVDALRLGAYDYLTKPLDFDALRETLQR 116 >gi|190572238|ref|YP_001970083.1| putative nitrogen regulation protein NR(I) [Stenotrophomonas maltophilia K279a] gi|190010160|emb|CAQ43768.1| putative nitrogen regulation protein nr(i) [Stenotrophomonas maltophilia K279a] Length = 482 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q+I + +DD +R L AL +AGY+VV ++ A A + E P +LL TD+ MP DG Sbjct: 9 QRIWVVDDDRAVRFVLCTALREAGYQVVDFDSAAPALQALSEGPPPALLFTDVRMPGDDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L + P L V+ ++ + VA + + LSKPF L D V R+L Sbjct: 69 LVLLDKLKAALPQLPVVVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAQRVL 125 >gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 224 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+ V C++G + + ++++PF LL+ DI+MP+++G+E Sbjct: 3 KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDKPFDLLILDIIMPKINGLE 62 Query: 64 LARRATEL-DPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R ++ + V+ +T + D+ A L KPF ++L + LL Sbjct: 63 LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGAD---DYLVKPFSFQELEARIKALL 118 >gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V+S +NG A + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|306843982|ref|ZP_07476577.1| nitrogen regulation protein NR(I) [Brucella sp. BO1] gi|306275737|gb|EFM57461.1| nitrogen regulation protein NR(I) [Brucella sp. BO1] Length = 491 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKMRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|256376488|ref|YP_003100148.1| PAS/PAC sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] gi|255920791|gb|ACU36302.1| PAS/PAC sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] Length = 546 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL ED +R + L + GY+V++ NG +A + L+LTD+VMP M G Sbjct: 418 ILLVEDQVALREVTRRLLERNGYDVITAPNGMAALRIAHDHQGHIDLVLTDVVMPGMLGK 477 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL R T + P + V++++G+A L ++ KPF +L+++V+ Sbjct: 478 ELGERVTLVRPGVAVVYMSGYAQPVLTSQGTLNPGVVLVEKPFSEAELMSKVH 530 >gi|220925301|ref|YP_002500603.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949908|gb|ACL60300.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 641 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R L GY+ + +A ++ EPF L++ D+ MP M G++L Sbjct: 526 ILVVDDDPQVRHVTASFLSGFGYDAIEVPGAEAALARLGAEPFDLVVADLAMPGMTGLDL 585 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A E P L + +TG A A P + A VL KPF +L V LL Sbjct: 586 AEAVRERWPALPFLIVTGHAEAARIPHAYA-----VLEKPFPSTELGARVATLL 634 >gi|218532309|ref|YP_002423125.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524612|gb|ACK85197.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 783 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 +IL+ ED+ ++ RF + L + G++ V N +A ++ E PF + +D+VMP M G Sbjct: 659 RILVVEDNLEVGRFCTQILEELGHQPVWAENAEAALVELERTETPFEAVFSDVVMPGMGG 718 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I LAR E PDL V+ +G++ V D++ ++L KP+ ++L Sbjct: 719 IALARILRERYPDLPVVLTSGYSHVLAQDDAHG---FELLRKPYSAQEL 764 >gi|78042666|ref|YP_359865.1| chemotaxis response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77994781|gb|ABB13680.1| chemotaxis response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 121 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ ++L+ +D MR + L K GYEVV NGA A + +E ++ DI MPEM Sbjct: 1 MSARVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKPDVVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGI+ R ++DP+ K++ + AL ++ + KPF Sbjct: 61 DGIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQ 107 >gi|23501995|ref|NP_698122.1| nitrogen regulation protein NtrC [Brucella suis 1330] gi|62290031|ref|YP_221824.1| nitrogen regulation protein NtrC [Brucella abortus bv. 1 str. 9-941] gi|82699958|ref|YP_414532.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148560702|ref|YP_001259038.1| nitrogen regulation protein NR(I) [Brucella ovis ATCC 25840] gi|161619069|ref|YP_001592956.1| nitrogen regulation protein NR(I) [Brucella canis ATCC 23365] gi|189024271|ref|YP_001935039.1| nitrogen regulation protein NtrC [Brucella abortus S19] gi|254689343|ref|ZP_05152597.1| nitrogen regulation protein NtrC [Brucella abortus bv. 6 str. 870] gi|254697476|ref|ZP_05159304.1| nitrogen regulation protein NtrC [Brucella abortus bv. 2 str. 86/8/59] gi|254701860|ref|ZP_05163688.1| nitrogen regulation protein NtrC [Brucella suis bv. 5 str. 513] gi|254704406|ref|ZP_05166234.1| nitrogen regulation protein NtrC [Brucella suis bv. 3 str. 686] gi|254706698|ref|ZP_05168526.1| nitrogen regulation protein NtrC [Brucella pinnipedialis M163/99/10] gi|254710194|ref|ZP_05172005.1| nitrogen regulation protein NtrC [Brucella pinnipedialis B2/94] gi|254714192|ref|ZP_05176003.1| nitrogen regulation protein NtrC [Brucella ceti M644/93/1] gi|254717627|ref|ZP_05179438.1| nitrogen regulation protein NtrC [Brucella ceti M13/05/1] gi|254730373|ref|ZP_05188951.1| nitrogen regulation protein NtrC [Brucella abortus bv. 4 str. 292] gi|256031688|ref|ZP_05445302.1| nitrogen regulation protein NtrC [Brucella pinnipedialis M292/94/1] gi|256257589|ref|ZP_05463125.1| nitrogen regulation protein NtrC [Brucella abortus bv. 9 str. C68] gi|256369544|ref|YP_003107054.1| nitrogen regulation protein NtrC [Brucella microti CCM 4915] gi|260546583|ref|ZP_05822322.1| nitrogen regulation protein NtrC [Brucella abortus NCTC 8038] gi|260754860|ref|ZP_05867208.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758077|ref|ZP_05870425.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761901|ref|ZP_05874244.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883872|ref|ZP_05895486.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261219464|ref|ZP_05933745.1| nitrogen metabolism transcriptional regulator [Brucella ceti M13/05/1] gi|261314159|ref|ZP_05953356.1| nitrogen metabolism transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317752|ref|ZP_05956949.1| nitrogen metabolism transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321960|ref|ZP_05961157.1| nitrogen metabolism transcriptional regulator [Brucella ceti M644/93/1] gi|261752423|ref|ZP_05996132.1| nitrogen metabolism transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755083|ref|ZP_05998792.1| nitrogen metabolism transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265988783|ref|ZP_06101340.1| nitrogen metabolism transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|297248431|ref|ZP_06932149.1| nitrogen regulation protein NR(I) [Brucella abortus bv. 5 str. B3196] gi|23347946|gb|AAN30037.1| nitrogen regulation protein NtrC [Brucella suis 1330] gi|62196163|gb|AAX74463.1| NtrC, nitrogen regulation protein NtrC [Brucella abortus bv. 1 str. 9-941] gi|82616059|emb|CAJ11096.1| CbxX/CfqX superfamily:Response regulator receiver:Sigma-54 factor interaction domain:Helix-turn-helix, Fis-type:AAA ATPase [Brucella melitensis biovar Abortus 2308] gi|148371959|gb|ABQ61938.1| nitrogen regulation protein NR(I) [Brucella ovis ATCC 25840] gi|161335880|gb|ABX62185.1| nitrogen regulation protein NR(I) [Brucella canis ATCC 23365] gi|189019843|gb|ACD72565.1| nitrogen regulation protein NtrC [Brucella abortus S19] gi|255999706|gb|ACU48105.1| nitrogen regulation protein NtrC [Brucella microti CCM 4915] gi|260095633|gb|EEW79510.1| nitrogen regulation protein NtrC [Brucella abortus NCTC 8038] gi|260668395|gb|EEX55335.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260672333|gb|EEX59154.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674968|gb|EEX61789.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260873400|gb|EEX80469.1| nitrogen metabolism transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260924553|gb|EEX91121.1| nitrogen metabolism transcriptional regulator [Brucella ceti M13/05/1] gi|261294650|gb|EEX98146.1| nitrogen metabolism transcriptional regulator [Brucella ceti M644/93/1] gi|261296975|gb|EEY00472.1| nitrogen metabolism transcriptional regulator [Brucella pinnipedialis B2/94] gi|261303185|gb|EEY06682.1| nitrogen metabolism transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261742176|gb|EEY30102.1| nitrogen metabolism transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261744836|gb|EEY32762.1| nitrogen metabolism transcriptional regulator [Brucella suis bv. 3 str. 686] gi|264660980|gb|EEZ31241.1| nitrogen metabolism transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|297175600|gb|EFH34947.1| nitrogen regulation protein NR(I) [Brucella abortus bv. 5 str. B3196] Length = 491 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|256159844|ref|ZP_05457577.1| nitrogen regulation protein NtrC [Brucella ceti M490/95/1] gi|256255090|ref|ZP_05460626.1| nitrogen regulation protein NtrC [Brucella ceti B1/94] gi|261222284|ref|ZP_05936565.1| nitrogen metabolism transcriptional regulator [Brucella ceti B1/94] gi|265998248|ref|ZP_06110805.1| nitrogen metabolism transcriptional regulator [Brucella ceti M490/95/1] gi|260920868|gb|EEX87521.1| nitrogen metabolism transcriptional regulator [Brucella ceti B1/94] gi|262552716|gb|EEZ08706.1| nitrogen metabolism transcriptional regulator [Brucella ceti M490/95/1] Length = 491 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|268680199|ref|YP_003304630.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268618230|gb|ACZ12595.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 225 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 7/124 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ +R + + L G++V++ NG AY + E F LL+ DI +P+M+G+ Sbjct: 2 KILLLEDESMLRSSIEEYLEGLGHKVIAFGNGEEAYSAIAEGVFDLLILDINIPKMNGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPK--NAKVLSKPFHLRDL---VNEVNRLL 118 L + E + +FI+ A V ++ S A + + L KPFHL++L ++++ + Sbjct: 62 LLKALNEAEKAYPTIFIS--ANVEIDDISRAFELGASDYLKKPFHLKELGLRIDKIKKAY 119 Query: 119 TIKN 122 IK+ Sbjct: 120 EIKH 123 >gi|152998187|ref|YP_001343022.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839111|gb|ABR73087.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 244 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ +DD D+R+ L AL + GY+V+ NG + + EP L+L D+ + E DG Sbjct: 6 KKTLLVVDDDQDIRQLLCDALSQKGYKVLEAENGTQMWSHLEAEPVDLVLMDLYLREEDG 65 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + LAR E + +M +TG + L D + KPF+LR+L + Sbjct: 66 LSLAREVRERFV-MPIMMLTGKGDETDRILGLELAADD-------YMMKPFNLRELTARI 117 Query: 115 NRLL 118 + LL Sbjct: 118 HALL 121 >gi|295697784|ref|YP_003591022.1| response regulator receiver protein [Bacillus tusciae DSM 2912] gi|295413386|gb|ADG07878.1| response regulator receiver protein [Bacillus tusciae DSM 2912] Length = 120 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ +D +R L + L + GY + NG A V++E L+L D+ +P MDG Sbjct: 3 SKKILVVDDQFGIRVLLKELLEQDGYSIYQAANGPGALQIVQDERPDLILLDMKIPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +E+ R ++DP +KV+ +T + + L +++ +KPF + +++ +V R Sbjct: 63 LEILRHIRDIDPAVKVIMMTAYGELDLVREADELGVVAHFTKPFDI-EVIRQVIR 116 >gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3] gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3] Length = 247 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 21 ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIMMPQMDGIEL 80 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 81 CRRIRE-KHSLPIMFLSA 97 >gi|226357957|ref|YP_002787697.1| response regulator, OmpR [Deinococcus deserti VCD115] gi|226320200|gb|ACO48193.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 227 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q IL+ EDD D+ + L + AGY V++ N S R E L++ D+ +P+M Sbjct: 1 MQQTILVIEDDPDIAQILTTEIEDAGYRVLTAPNRMSGLTCARSEAPDLVILDLGLPDMH 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G E+AR R T P ++ +TG VA + L+KPFH +LV V Sbjct: 61 GTEVARRLRRTSRTP---IVVLTGMDTVASKVGLLEAGASDYLTKPFHPEELVARVR 114 >gi|192290361|ref|YP_001990966.1| signal transduction histidine kinase, nitrogen specific, NtrB [Rhodopseudomonas palustris TIE-1] gi|192284110|gb|ACF00491.1| signal transduction histidine kinase, nitrogen specific, NtrB [Rhodopseudomonas palustris TIE-1] Length = 933 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 + ILL EDD+ +R F + L GY ++ +GA+A +VR PF LLLTDI+MP M Sbjct: 795 TETILLVEDDELVRNFALAQLRGLGYRTIAAADGAAALAEVRRGTPFDLLLTDIIMPGGM 854 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA L P +KV++ +G+ A+ +LSKPF DL V L Sbjct: 855 NGRELADAVARLRP-VKVLYTSGYTENAIMHHGRLDPGVLLLSKPFRRADLARLVRAAL 912 >gi|322420176|ref|YP_004199399.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320126563|gb|ADW14123.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 478 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 55/103 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++ MR L KAL K G+ V +G A +RE + L L DI MP M G+EL Sbjct: 6 ILVADDEESMRWVLSKALKKKGFNVELAKDGNEALKLIRENIYDLALLDIKMPGMTGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 R E DL V+ +T A++ ++ L+KPF L Sbjct: 66 LDRVKEERADLLVVIMTAEASMKNAVEAMKRGAYDYLTKPFDL 108 >gi|224368295|ref|YP_002602458.1| sensory histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223691011|gb|ACN14294.1| sensory histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 229 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 60/101 (59%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD ++ R L L + GY+V + G A D + + + LL+ D+ +P++DG+++ Sbjct: 18 ILIMEDDLNVARGLKMVLDEQGYDVDLRDTGYGALDAIGQYEYDLLMADLRLPDIDGMQV 77 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++ + +P+ V+ +TG+A AL D+ + ++KPF Sbjct: 78 IKQVRQSNPETGVIVMTGYATSALAVDALKLGASDFIAKPF 118 >gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] Length = 793 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ + L K LG +G ++ C+NG A + +PF L+L D+ MP MDG+E Sbjct: 659 RLLVAEDNRTNQLVLKKMLGPSGIQMTICSNGQEAVETFAAQPFDLVLMDMSMPVMDGLE 718 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R RA E + I A L+ D A + A + LSKP ++L++++ + Sbjct: 719 ATRRLRAWEQENARAPCPILALTANVLSTDEAACRAAGMVGFLSKPVRKQELLDQIAKWT 778 Query: 119 TIKN 122 I + Sbjct: 779 GIAD 782 >gi|114777229|ref|ZP_01452240.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114552374|gb|EAU54857.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 993 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+ D+R + L GY V+ ++G A + K E +L++ D+VMP++ G+ Sbjct: 876 ILIVDDNADIRSTGREVLESIGYSVLEASDGLQAVELTKDSEMDIALIIMDVVMPKLGGV 935 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 A R L PD+K++F TG+ D P + VLSKP+++ L Sbjct: 936 PAAARIRALCPDMKIIFATGYDKDETLKDE-MPSDEIVLSKPYNVVKL 982 >gi|116621997|ref|YP_824153.1| two component sigma54-specific Fis family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225159|gb|ABJ83868.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Solibacter usitatus Ellin6076] Length = 465 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDDD +R+ + L + GYE S + A+ + + SL++TD+ +P M G+E Sbjct: 5 RILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGMSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ P+ V+ +T F + ++ L+KP H +L V R L Sbjct: 65 LLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCL 119 >gi|331266057|ref|YP_004325687.1| response regulator [Streptococcus oralis Uo5] gi|326682729|emb|CBZ00346.1| response regulator [Streptococcus oralis Uo5] Length = 245 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A+D ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWDLIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LAR E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGIQLARLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|302342756|ref|YP_003807285.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639369|gb|ADK84691.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1224 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 8/123 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 N+ ILL +D+ D+RR + L AGY V++ +G A + K LL+ D+ MP M Sbjct: 1103 NETILLVDDEPDLRRLGVHVLASAGYNVLAAGSGEEALELFKASAGRIDLLVMDLGMPGM 1162 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G + +DP KV+ +G+AA S A ++KPF DL LLT Sbjct: 1163 GGHRALKEILAIDPRAKVIIASGYAANGQVKASLQSGAAGYVAKPFRRVDL------LLT 1216 Query: 120 IKN 122 +N Sbjct: 1217 ARN 1219 >gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1] gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1] Length = 232 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|163853449|ref|YP_001641492.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665054|gb|ABY32421.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 783 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 +IL+ ED+ ++ RF + L + G++ V N +A ++ E PF + +D+VMP M G Sbjct: 659 RILVVEDNLEVGRFCTQILEELGHQPVWAENAEAALVELERTETPFEAVFSDVVMPGMGG 718 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I LAR E PDL V+ +G++ V D++ ++L KP+ ++L Sbjct: 719 IALARILRERYPDLPVVLTSGYSHVLAQDDAHG---FELLRKPYSAQEL 764 >gi|115375408|ref|ZP_01462670.1| RedD [Stigmatella aurantiaca DW4/3-1] gi|310825194|ref|YP_003957552.1| RedD protein [Stigmatella aurantiaca DW4/3-1] gi|115367610|gb|EAU66583.1| RedD [Stigmatella aurantiaca DW4/3-1] gi|309398266|gb|ADO75725.1| RedD protein [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 59/113 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D++ +R L L G+ V+ ++G A +RE ++LTDI MP + G+E Sbjct: 5 SILVVDDEESLRITLAANLELEGHLVLEASSGDEALRLLRERAVDVVLTDIRMPGLHGVE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R P L V+ +T FA +L D+ A VL KPF + L+ + R Sbjct: 65 LHRHLRREHPGLPVVLMTAFAQESLINDALAEGAFTVLPKPFDVEHLLETLRR 117 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 53/112 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +++ ++ L G + +G +A ++VR F + + D+VMP M G E+ Sbjct: 124 VLVVDDTEEVAEATVEGLRLCGLSAQAVYDGDAAIERVRSGRFDVCVVDLVMPGMSGTEM 183 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R L V+ ++G + + A + + KP +R+L + R Sbjct: 184 VERVRGAGFPLGVIAVSGHDVPQMMREVAALGDVACMRKPISIRELAQTIAR 235 >gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis] Length = 220 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDDD + + L +AGY+V +C +G AY K E + L++ DI++P M+ Sbjct: 1 MSIRILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G EL R RA D ++ +T AL+ D N + ++KPF ++ L+ Sbjct: 61 GHELLREFRAKN---DTPILMMT-----ALSDDENQIRAFDAEADDYVTKPFKMQILLKR 112 Query: 114 VNRLL 118 V LL Sbjct: 113 VEALL 117 >gi|87309427|ref|ZP_01091562.1| Response regulator (CheY-like receiver domain and DNA-binding HTHdomain) [Blastopirellula marina DSM 3645] gi|87287735|gb|EAQ79634.1| Response regulator (CheY-like receiver domain and DNA-binding HTHdomain) [Blastopirellula marina DSM 3645] Length = 166 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ILL +D+ + R L ++GYE+ +G A++ ++E+ LL+TD MP +DG Sbjct: 33 GKRILLVDDEMHILRAAEFKLKRSGYEIECVEDGQQAWEAIQEQMPDLLITDFHMPRLDG 92 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSN--APKNAKVLSKPFHLRDLVNEVNRL 117 + L R R E L ++ +T + D N + + A +L+KPF R LVN V + Sbjct: 93 LGLCRLVREDEATRQLPIIMLTA-KGFEMTSDDNLESLEIAAILAKPFSPRGLVNCVEAV 151 Query: 118 LT 119 LT Sbjct: 152 LT 153 >gi|313123569|ref|YP_004033828.1| DNA-binding response regulator, ompr family (rec-whth domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280132|gb|ADQ60851.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 222 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++ Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + +M +T + + L+KPF L++L+ Sbjct: 62 AVKEIRAAGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELL 109 >gi|258592519|emb|CBE68828.1| putative Response regulator receiver modulated metal dependent phosphohydrolase [NC10 bacterium 'Dutch sediment'] Length = 490 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ D+ L + L V C +GASA ++ EPF L+L+DI MP G+E Sbjct: 6 RVLVAEDNPDILELLGELLEAEQCRVTLCPDGASALTQIAAEPFHLILSDITMPGASGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL---RDLVNEVNRL 117 + R++ + + V+ I+G + + + L KPFHL RDLV V +L Sbjct: 66 ILDRSSAMAVGIPVVLISGNVDLEVALFALRRGAFDCLLKPFHLDDIRDLVRRVQQL 122 >gi|229916985|ref|YP_002885631.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468414|gb|ACQ70186.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 224 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ MR + L GY + ++ SA DK+ E P L+L DI+MPE+DGI Sbjct: 2 KILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKIEERP-DLVLLDIMMPEVDGIS 60 Query: 64 LARRATELDPDLKVMFITG 82 L R+ +DP L V+ +T Sbjct: 61 LCRQLKTMDPALPVVLLTA 79 >gi|218777944|ref|YP_002429262.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759328|gb|ACL01794.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 782 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + IL+ ED+ + L + GY+V++ ++ A + VR+ P L++TD+VMPEM+ Sbjct: 661 ETILVVEDEKAILNMCAAILKRNGYQVLASSSPHEALEIVRQWDGPLDLVITDVVMPEMN 720 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + + + P LK +F++G+ + + + + KPF + D +++ ++L Sbjct: 721 GSAMKSKLEGIRPGLKHLFMSGYTSNVIAHHGVLDRGVLYIQKPFSVNDFLSKTRKVLDS 780 Query: 121 K 121 K Sbjct: 781 K 781 >gi|319787074|ref|YP_004146549.1| response regulator receiver protein [Pseudoxanthomonas suwonensis 11-1] gi|317465586|gb|ADV27318.1| response regulator receiver protein [Pseudoxanthomonas suwonensis 11-1] Length = 121 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D MR+ + AL AG+ V +G A D+ + + F+ ++TD+ MP MD Sbjct: 1 MSARILVVDDSASMRQMVSFALTTAGFAVEEAEDGQVALDRAQGQRFNAVVTDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L R L PD + ++ +T +A + A L KPF+ LV V ++ Sbjct: 61 GISLIRALRGL-PDYRFTPLLMLTTESAADKKAEGKAAGATGWLVKPFNPEQLVATVQKV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|317122900|ref|YP_004102903.1| response regulator receiver protein [Thermaerobacter marianensis DSM 12885] gi|315592880|gb|ADU52176.1| response regulator receiver protein [Thermaerobacter marianensis DSM 12885] Length = 120 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D MR L L +AG+ VV NGA A ++ R+E L+L DI MP MDG+ Sbjct: 3 KILVADDAAFMRMRLSNLLTEAGHTVVEATNGAEAVEQYRQERPDLVLLDITMPVMDGLA 62 Query: 64 LARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LDP +++ + G A+ L + ++ + KPF ++ V R+L+ Sbjct: 63 AIEAIRALDPAARIVVCSSLGQQAIVLKAIQSGARD--FIVKPFQPDRVLGAVERVLS 118 >gi|302341832|ref|YP_003806361.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638445|gb|ADK83767.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1276 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++I+L +D+ + + + + LG GY V + A + +P F LL+TD MP + Sbjct: 1138 ERIMLVDDEPGLAQTMGELLGCLGYRVAVFQDSRQALYAFQNDPSAFDLLITDQTMPGLT 1197 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 G L RR L PDL V+ TG++ +L PD A ++ L KPF R+L V ++L Sbjct: 1198 GEALIRRMLALRPDLPVILCTGYSE-SLKPDDAARLGVRLFLYKPFSHRELAAAVRQVL 1255 >gi|240140869|ref|YP_002965349.1| putative hybrid histidine kinase with multiple PAS and a response regulator receiver domain [Methylobacterium extorquens AM1] gi|240010846|gb|ACS42072.1| putative hybrid histidine kinase with multiple PAS and a response regulator receiver domain [Methylobacterium extorquens AM1] Length = 775 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 +IL+ ED+ ++ RF + L + G++ V N +A ++ E PF + +D+VMP M G Sbjct: 651 RILVVEDNLEVGRFCTQILEELGHQPVWAENAEAALVELERTETPFEAVFSDVVMPGMGG 710 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I LAR E PDL V+ +G++ V D++ ++L KP+ ++L Sbjct: 711 IALARILRERYPDLPVVLTSGYSHVLAQDDAHG---FELLRKPYSAQEL 756 >gi|254522801|ref|ZP_05134856.1| nitrogen regulation protein [Stenotrophomonas sp. SKA14] gi|219720392|gb|EED38917.1| nitrogen regulation protein [Stenotrophomonas sp. SKA14] Length = 482 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q+I + +DD +R L AL +AGYEVV ++ A A + E P +LL TD+ MP DG Sbjct: 9 QRIWVVDDDRAVRFVLCTALREAGYEVVDFDSAAPALQALGEGPPPALLFTDVRMPGDDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L + P L V+ ++ + VA + + LSKPF L D V R+L Sbjct: 69 LVLLDKLKGALPQLPVVVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAQRVL 125 >gi|261409726|ref|YP_003245967.1| two component AraC family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286189|gb|ACX68160.1| two component transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10] Length = 525 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 7/116 (6%) Query: 4 KILLAEDDD----DMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+LL +D++ M+RF+ G EV S NN +A + + EEP +L++D+ MP Sbjct: 3 KVLLVDDEELDLEGMKRFI--PWSDLGMEVRGSVNNALAACEIMEEEPIDILVSDVNMPY 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 M G+ELAR A E P+++++F++G+ + + + K + KP + +LV + Sbjct: 61 MSGLELARIALERRPNMRIIFVSGYQEFSYVQQAMSLKAYSYVLKPMNDSELVTSL 116 >gi|223935238|ref|ZP_03627156.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223896122|gb|EEF62565.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1060 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE-M 59 + IL+ ED+ +R + K L GY+V+ +G+ A + +E LLLTD+VMP+ M Sbjct: 938 ETILVVEDEAAVRELVCKILISRGYQVLHAVSGSKALEVWKEHKNRIDLLLTDMVMPDGM 997 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA + P LK +F +G+++ D + L KP+H LV + + L Sbjct: 998 SGRDLAEQIQTEKPGLKAVFTSGYSSEIAGKDFILKEGLNFLQKPYHPHKLVRVIRKCLD 1057 Query: 120 IKN 122 N Sbjct: 1058 DNN 1060 >gi|326409136|gb|ADZ66201.1| nitrogen regulation protein NR(I) [Brucella melitensis M28] gi|326538844|gb|ADZ87059.1| nitrogen regulation protein NR(I) [Brucella melitensis M5-90] Length = 491 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|260566347|ref|ZP_05836817.1| nitrogen regulation protein NtrC [Brucella suis bv. 4 str. 40] gi|260155865|gb|EEW90945.1| nitrogen regulation protein NtrC [Brucella suis bv. 4 str. 40] Length = 491 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|256061200|ref|ZP_05451352.1| nitrogen regulation protein NtrC [Brucella neotomae 5K33] gi|261325208|ref|ZP_05964405.1| nitrogen metabolism transcriptional regulator [Brucella neotomae 5K33] gi|261301188|gb|EEY04685.1| nitrogen metabolism transcriptional regulator [Brucella neotomae 5K33] Length = 491 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|153004813|ref|YP_001379138.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028386|gb|ABS26154.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 470 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 58/106 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++RR L L + GYEV + +G A + + P +++TD+VMP++ G+EL Sbjct: 4 VLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHKTPVHVVVTDLVMPKVGGMEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 RR PD+ V+ IT +V + ++KPF +L Sbjct: 64 LRRVGADFPDVPVIMITAHGSVDSAVGALKAGAFDYITKPFEQDEL 109 >gi|256829422|ref|YP_003158150.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578598|gb|ACU89734.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1131 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 4 KILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +ILLAEDD+ + F +AL +AGYEV G A +RE+ F L+L D+ MP MDG+ Sbjct: 1005 RILLAEDDE-VTIFATRALLTRAGYEVSVARTGHEAVSLLREQDFGLVLMDVQMPGMDGV 1063 Query: 63 ELARRATELDP---DLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNR 116 E A R DP D + + I A A++ + A ++KP ++DL ++ Sbjct: 1064 E-ATRIIRSDPGLGDKRSIPIIALTAFAMDGEKEIFLAAGMDGYVAKPVGMKDLTRAIDA 1122 Query: 117 LLT 119 +L+ Sbjct: 1123 VLS 1125 >gi|27365278|ref|NP_760806.1| flagellar regulatory protein fleQ [Vibrio vulnificus CMCP6] gi|27361425|gb|AAO10333.1| Flagellar regulatory protein fleQ [Vibrio vulnificus CMCP6] Length = 471 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ P ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKANPVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQNWPNLPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|39996393|ref|NP_952344.1| response regulator [Geobacter sulfurreducens PCA] gi|39983273|gb|AAR34667.1| response regulator [Geobacter sulfurreducens PCA] gi|298505403|gb|ADI84126.1| response regulator, putative [Geobacter sulfurreducens KN400] Length = 123 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 6/122 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD+ +R + + + AG+ V +NG + +R P ++++TDI+MPE +G+ Sbjct: 2 KHILVIDDDEQVRTLVGRFISGAGFAVEMADNGVTGLAAMRRAPAAVVITDIIMPEKEGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPD-----SNAPKNAKVLSKPFHLRDLVNEVNRL 117 E PD K++ ++G + + PD + ++L KPF L+N VN L Sbjct: 62 ETIMELRRDFPDAKIIAMSG-GSPQMQPDLPLRLARTLGADRILHKPFTRDALLNLVNEL 120 Query: 118 LT 119 ++ Sbjct: 121 IS 122 >gi|15645977|ref|NP_208157.1| response regulator [Helicobacter pylori 26695] gi|208435261|ref|YP_002266927.1| response regulator [Helicobacter pylori G27] gi|2314531|gb|AAD08405.1| response regulator [Helicobacter pylori 26695] gi|208433190|gb|ACI28061.1| response regulator [Helicobacter pylori G27] Length = 213 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|22536576|ref|NP_687427.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010502|ref|NP_734897.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76787873|ref|YP_329113.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76799057|ref|ZP_00781250.1| putative two-component response regulator [Streptococcus agalactiae 18RS21] gi|77406449|ref|ZP_00783506.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77408785|ref|ZP_00785515.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77411642|ref|ZP_00787982.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413961|ref|ZP_00790135.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22533411|gb|AAM99299.1|AE014209_12 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23094855|emb|CAD46073.1| gbs0429 [Streptococcus agalactiae NEM316] gi|76562930|gb|ABA45514.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76585594|gb|EAO62159.1| putative two-component response regulator [Streptococcus agalactiae 18RS21] gi|77159997|gb|EAO71134.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77162286|gb|EAO73257.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77172630|gb|EAO75769.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77174951|gb|EAO77763.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744355|gb|EFV96715.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 228 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QK+LL +D+ ++ + L +AGYEV +G A +V E F L+++DI+MP+MD Sbjct: 1 MTQKLLLVDDEFEIIDINRRYLEQAGYEVSVAADGIEALKEVDENRFDLIISDIMMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + +P+ +FIT + S + +SKPF R+LV V +L Sbjct: 61 GYDFISEVLVREPNQPFLFITAKVSEPDKIYSLSMGADDFISKPFSPRELVLRVKNIL 118 >gi|260772321|ref|ZP_05881237.1| flagellar regulatory protein FleQ [Vibrio metschnikovii CIP 69.14] gi|260611460|gb|EEX36663.1| flagellar regulatory protein FleQ [Vibrio metschnikovii CIP 69.14] Length = 469 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + ++ A K++ P ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADSAEDALIKLKTHPVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P++ V+ +T +A + + ++KPF L+N ++R +K Sbjct: 63 LALLRNIKQHWPNVPVLLMTAYANIEDAVAAMKEGAIDYMAKPFAPEVLLNMISRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|257884194|ref|ZP_05663847.1| two component transcriptional regulator [Enterococcus faecium 1,231,501] gi|257820032|gb|EEV47180.1| two component transcriptional regulator [Enterococcus faecium 1,231,501] Length = 222 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + L++ L K GY V S G A D + ++ F L L DI++PE+DG E Sbjct: 6 KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E DL V+F+T ++ ++KPF L +L+ V +L Sbjct: 66 VFAYMREY--DLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVL 118 >gi|256044774|ref|ZP_05447678.1| nitrogen regulation protein NR(I) [Brucella melitensis bv. 1 str. Rev.1] gi|260565623|ref|ZP_05836107.1| nitrogen regulation protein NtrC [Brucella melitensis bv. 1 str. 16M] gi|265991198|ref|ZP_06103755.1| nitrogen metabolism transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|260151691|gb|EEW86785.1| nitrogen regulation protein NtrC [Brucella melitensis bv. 1 str. 16M] gi|263001982|gb|EEZ14557.1| nitrogen metabolism transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] Length = 491 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|217032423|ref|ZP_03437917.1| hypothetical protein HPB128_164g23 [Helicobacter pylori B128] gi|298737027|ref|YP_003729557.1| OmpR family two-component system response regulator [Helicobacter pylori B8] gi|216945902|gb|EEC24520.1| hypothetical protein HPB128_164g23 [Helicobacter pylori B128] gi|298356221|emb|CBI67093.1| two-component system, OmpR family, response regulator [Helicobacter pylori B8] Length = 213 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|74316922|ref|YP_314662.1| two component Fis family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056417|gb|AAZ96857.1| Two Component Transcriptional Regulator, Fis family [Thiobacillus denitrificans ATCC 25259] Length = 454 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D +RR L L AG+E +G A + E F L++TD+ M M G++ Sbjct: 2 RILLVDDQKSLRRSLSLMLQGAGFETGEAESGEEALSCLGAERFDLVITDLRMEGMSGVD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R L+P L V+ IT + ++ D+ L+KPF +D++ ++ Sbjct: 62 LLREIKRLNPLLPVILITAYGSIDSAVDAMRLGAFDYLTKPFREQDILEKI 112 >gi|294620680|ref|ZP_06699887.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291599660|gb|EFF30670.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] Length = 218 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + L++ L K GY V S G A D + ++ F L L DI++PE+DG E Sbjct: 2 KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E DL V+F+T ++ ++KPF L +L+ V +L Sbjct: 62 VFAYMREY--DLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVL 114 >gi|196231317|ref|ZP_03130176.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196224653|gb|EDY19164.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 127 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KILLAED+ R L KAGY V+ NGA A + L+L D+ MPEMD Sbjct: 1 MSAKILLAEDNAANRYLETFLLEKAGYTVIHAQNGAEALRLALADQPDLVLMDLQMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNRL 117 G E ARR +P L I + A+ D A + KP + E+++ Sbjct: 61 GYESARR-IHAEPRLAETPIVAVTSFAMTRDREKALQFGFAGYIEKPIRPQTFAAEISQF 119 Query: 118 LTIK 121 LT K Sbjct: 120 LTGK 123 >gi|119469983|ref|ZP_01612788.1| putative Sigma-54 dependent response regulator; regulation of polar flagellae expression [Alteromonadales bacterium TW-7] gi|119446693|gb|EAW27966.1| putative Sigma-54 dependent response regulator; regulation of polar flagellae expression [Alteromonadales bacterium TW-7] Length = 488 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 63/118 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ EDD +R LI L +G E ++ N A +++E FSL+++D+ M M Sbjct: 1 MSNTILVVEDDAGLREALIDTLEMSGIECIAANCAEQAMLLLKKEQFSLVVSDVQMGTMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R P+L V+ +T +A + ++ ++KPF L+N V+R L Sbjct: 61 GLDLLRSIKLNHPELPVLMMTAYATIDDAVEAMRLGAIDYMAKPFAPEVLLNMVSRYL 118 >gi|94267455|ref|ZP_01290882.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451996|gb|EAT02701.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 815 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + ILL +D++ + LGK Y V C + A D +R + F LL+TD MP++ Sbjct: 680 EHILLVDDEEAVLEAAASGLGKLNYRVSVCRDPIEALDLLRVQQAADFDLLITDYSMPKL 739 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA + +L +M TG+A+ + A + +L KP L E+ R+L Sbjct: 740 KGTELAAAVKVIRAELPIMLCTGYASKIDESAAMAMGISALLMKPLQQDILATEIRRVLD 799 Query: 120 IKN 122 KN Sbjct: 800 QKN 802 >gi|83858789|ref|ZP_00952311.1| cell cycle histidine kinase CckA [Oceanicaulis alexandrii HTCC2633] gi|83853612|gb|EAP91464.1| cell cycle histidine kinase CckA [Oceanicaulis alexandrii HTCC2633] Length = 867 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +IL ED+D +R K L + GYEVV +G A + + EE F LL++D+VMP +DG Sbjct: 745 RILFVEDEDAVRAIAAKTLVRRGYEVVEACDGEEALEILEEEPESFDLLISDVVMPGLDG 804 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + A L + +++FI+G+A + + L KPF ++ L V L + Sbjct: 805 PGLLKEARHLLGNARIVFISGYAKEEFSDTLSDDLEISFLPKPFDIQQLAERVKEELAAR 864 >gi|253571309|ref|ZP_04848716.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251839262|gb|EES67346.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1333 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ L AGY + SC+NG A ++E L+++DI+MPEM G Sbjct: 1081 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDALVIIKEFNPDLVISDIMMPEMSGD 1139 Query: 63 EL 64 EL Sbjct: 1140 EL 1141 >gi|317477648|ref|ZP_07936861.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316906188|gb|EFV27929.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 630 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ KAGY + SC NG A +RE L+++DI+MPEM G Sbjct: 462 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMTGD 520 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + +L++ I AL + N + K + KPF + L V + Sbjct: 521 EL---CSIIKGNLEMSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNI 577 Query: 118 L 118 L Sbjct: 578 L 578 >gi|313681548|ref|YP_004059286.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313154408|gb|ADR33086.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 211 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 51/108 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + + ++ L GYEV NG AYD E PF L L D+ +PE +G E Sbjct: 3 RILLLEDDEILSQTIMTILRSEGYEVYKAVNGREAYDLTFEHPFDLYLFDVNVPESNGFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + R + + FIT + + + KPF L + V Sbjct: 63 VLRELRKSGDETPTFFITALSDIQSVSQGFEAGANDYIKKPFDLDEFV 110 >gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] Length = 962 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D RR L LG GY+V++ N+G A D + + P ++LTD+ MP MDG Sbjct: 839 RLLVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVLAKNPVDIVLTDVNMPNMDGYR 898 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R E+ L V+ +T A LSKP L L Sbjct: 899 FTQRLREMGQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLDTL 945 >gi|225852618|ref|YP_002732851.1| nitrogen regulation protein NR(I) [Brucella melitensis ATCC 23457] gi|256113673|ref|ZP_05454484.1| nitrogen regulation protein NR(I) [Brucella melitensis bv. 3 str. Ether] gi|256263890|ref|ZP_05466422.1| nitrogen regulation protein NtrC [Brucella melitensis bv. 2 str. 63/9] gi|265995034|ref|ZP_06107591.1| nitrogen metabolism transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|225640983|gb|ACO00897.1| nitrogen regulation protein NR(I) [Brucella melitensis ATCC 23457] gi|262766147|gb|EEZ11936.1| nitrogen metabolism transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263094021|gb|EEZ17955.1| nitrogen regulation protein NtrC [Brucella melitensis bv. 2 str. 63/9] Length = 491 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 10 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 70 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 124 >gi|207092723|ref|ZP_03240510.1| response regulator [Helicobacter pylori HPKX_438_AG0C1] Length = 213 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|219850106|ref|YP_002464539.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chloroflexus aggregans DSM 9485] gi|219544365|gb|ACL26103.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chloroflexus aggregans DSM 9485] Length = 860 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 +L+ +D+ D+R + + L +AGY V + NG+ A V + + + L DI + ++ G + Sbjct: 736 VLVVDDNKDVRSLIERLLRQAGYRVKAMANGSEALHLVTQGQAIACALVDITLADISGYD 795 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + RR EL+P + + I+G+ A + + A L KPF ++L++ V RL+ I+ Sbjct: 796 VCRRIAELNPCIPLALISGYPVEAASIGEVSV--AATLQKPFRAQELLSVVQRLIEIR 851 >gi|17987149|ref|NP_539783.1| nitrogen assimilation regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|17982814|gb|AAL52047.1| nitrogen assimilation regulatory protein [Brucella melitensis bv. 1 str. 16M] Length = 528 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 47 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 106 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 107 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 161 >gi|37680667|ref|NP_935276.1| sigma-54 dependent response regulator FlaM [Vibrio vulnificus YJ016] gi|37199416|dbj|BAC95247.1| sigma-54 dependent response regulator FlaM [Vibrio vulnificus YJ016] Length = 471 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ P ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKANPVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQNWPNLPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|320155662|ref|YP_004188041.1| flagellar regulatory protein FleQ [Vibrio vulnificus MO6-24/O] gi|319930974|gb|ADV85838.1| flagellar regulatory protein FleQ [Vibrio vulnificus MO6-24/O] Length = 471 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ P ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKANPVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQNWPNLPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|322421028|ref|YP_004200251.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127415|gb|ADW14975.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 852 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ IL+ ED++ +R+ + AL + GY + +G A +K R+ + L+ TD++MP Sbjct: 733 SETILVVEDEEHVRQLVNAALREFGYRTILAVDGEDALEKFRQHRKSIKLVFTDLIMPRK 792 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL +D +K++F +G+ A L D A + ++L KP +L +V LL Sbjct: 793 SGRELHDELKAIDSSVKILFTSGYTADML-ADQAAGERFEILMKPISPPELACKVRELL 850 >gi|170721624|ref|YP_001749312.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759627|gb|ACA72943.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 657 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 Q++LL +D+ +R + + L + G+ V + +A + R++ PF L++TDI +P + Sbjct: 538 QRVLLIDDEHSLRTVMGEYLRERGFTVTDVRDANTALECFRQDGPFDLVITDIGLPGGLS 597 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 G ++AR + PD K+++ITG+ L P +L KPF L Sbjct: 598 GRQMARAMRTIKPDQKILYITGYVDQPLEPHILEMPGTALLIKPFEL 644 >gi|194336714|ref|YP_002018508.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309191|gb|ACF43891.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1115 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 6/113 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS----LLLTDIVMP 57 +Q ILL ED+ + + L GY+V++ A A R E FS LL+TD++MP Sbjct: 989 HQTILLVEDELPILKLCQLMLEHNGYKVLAAATAAEAIK--RAENFSGTIDLLVTDVIMP 1046 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 EM+G EL+++ + P+LK++F++G+ A + D+ + L KP ++ L Sbjct: 1047 EMNGSELSKKLLSVRPELKILFMSGYTADIIAQDNVLERGVNFLQKPVTMKSL 1099 >gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides fragilis 638R] Length = 224 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+ V N+G + ++ +R+E F LL+ DI+MP+M+G+E Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQEAFDLLILDIIMPKMNGLE 62 Query: 64 LAR----RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + L P + + + + DS A L KPF ++L + +L Sbjct: 63 LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGAD---DYLVKPFSFQELEARIKAIL 118 >gi|254779909|ref|YP_003058015.1| putative transcriptional regulatory protein [Helicobacter pylori B38] gi|254001821|emb|CAX30062.1| Putative transcriptional regulatory protein [Helicobacter pylori B38] Length = 213 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEVRIKRFF 119 >gi|91202538|emb|CAJ72177.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 511 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 65/119 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL +D++ +R L L GY+V N+ A + ++ + L+++D+ MP M+ Sbjct: 1 MKKKILLVDDEETLRWALQNTLLDDGYDVEETNDSIEALELAKKRKYDLVISDLTMPFMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G++L + +P ++ + +TG+ + ++ + ++KPF L + + ++L+ Sbjct: 61 GVQLIAEIKKANPSIRAIIMTGYGSTEAVIEAMHTGVSDFITKPFKLEHMKKVIRKVLS 119 >gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 222 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 1/114 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+Q+ILL ED+ D+ R + L +AGY V++ +G + RE L++ D+ +P+ D Sbjct: 1 MDQRILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDFD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G E+ARR + + ++ +T AV + ++KPFH +LV V Sbjct: 61 GAEVARRLRKTS-SVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV 113 >gi|29349146|ref|NP_812649.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341054|gb|AAO78843.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1330 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L+ L AGY + SC+NG A ++E L+++DI+MPEM G Sbjct: 1078 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDALVIIKEFNPDLVISDIMMPEMSGD 1136 Query: 63 EL 64 EL Sbjct: 1137 EL 1138 >gi|311069813|ref|YP_003974736.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870330|gb|ADP33805.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 225 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 11/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED+D++ L K L G+ + S G A +++ P L + DI++P+ D Sbjct: 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKQMQPSP-HLWILDIMLPDTD 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G L + E+DP + V+FI+ A + L SN ++KPF R+L+ V Sbjct: 60 GYTLIKEIKEIDPYVPVIFISARDADIDRVLGLELGSN-----DYIAKPFLPRELIIRVQ 114 Query: 116 RLLTI 120 +LL + Sbjct: 115 KLLQL 119 >gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] Length = 242 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRIRE-KHSLPIMFLSA 92 >gi|183219504|ref|YP_001837500.1| putative sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777926|gb|ABZ96224.1| Putative sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 503 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 13/126 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 KIL+ +D++D+R L + L + GY++ + + A ++ E FSL+++DI+M M GI Sbjct: 3 KILIIDDEEDIRIALKRVLSREGYQIELSESASDAVKRIETGETFSLVISDILMSGMSGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVNR 116 + + E + +L V+ ITG NP+ ++ + A + +SKP L++ V R Sbjct: 63 DFTKFIAEKNINLPVILITG------NPNLSSAEAAIRYHAYEYISKPVDRTQLLSVVKR 116 Query: 117 LLTIKN 122 L +KN Sbjct: 117 ALEVKN 122 >gi|56964021|ref|YP_175752.1| two-component response regulator of modulation of flagellar [Bacillus clausii KSM-K16] gi|56910264|dbj|BAD64791.1| two-component response regulator of modulation of flagellar [Bacillus clausii KSM-K16] Length = 120 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++K+L+ +D MR L L K GY VV N+G A +K +E L+ DI MPE Sbjct: 1 MSKKVLVVDDAAFMRMMLKDILTKNGYNVVGEANDGNQAVEKYKELSPDLVTMDITMPEK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + + DP KV+ + A+ D+ + KPF +++ +++ L+ Sbjct: 61 DGISALKEIKQYDPSAKVIMCSAMGQQAMVIDAIQEGAKDFIVKPFQADRVIDAISKALS 120 >gi|237815540|ref|ZP_04594537.1| nitrogen regulation protein NR(I) [Brucella abortus str. 2308 A] gi|237788838|gb|EEP63049.1| nitrogen regulation protein NR(I) [Brucella abortus str. 2308 A] Length = 528 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 47 VLVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDL 106 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 107 LPRIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 161 >gi|59712461|ref|YP_205237.1| two-component response regulator FlrC [Vibrio fischeri ES114] gi|59480562|gb|AAW86349.1| two-component response regulator FlrC [Vibrio fischeri ES114] Length = 477 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE V ++ +A +++EP ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLELAGYEWVEADSAETALLILKKEPVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKLNWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 Sbjct: 123 T 123 >gi|332882614|ref|ZP_08450226.1| fused DNA-binding response regulator in twresponse regulator/sigma54 interaction protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679414|gb|EGJ52399.1| fused DNA-binding response regulator in twresponse regulator/sigma54 interaction protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 387 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K L + YEV ++G +K++++ + L+L DI MP+MDG Sbjct: 3 KILIIEDESAIRRVLSKILQEESKEYEVFEASDGIEGLEKLKKDDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ A ++ P++ + I+G + ++ +SKP L L+N V L Sbjct: 63 LEVLTEAKKIKPEVPFVMISGHGDLETAVNAMRLGAYDYISKPPDLNRLLNTVRNAL 119 >gi|311030117|ref|ZP_07708207.1| regulator of chemotaxis and motility [Bacillus sp. m3-13] Length = 120 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++IL+ +D MR + L K GY+VV +G A +K +E L+ DI MPEM Sbjct: 1 MSKRILIVDDAAFMRMMIKDILTKNGYDVVGEAADGVQAVEKYKEHHPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++P+ KV+ + A+ D+ + KPF ++ +++ L+ Sbjct: 61 DGITALKEIKAINPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIHKTLS 120 >gi|197335621|ref|YP_002156680.1| two-component response regulator [Vibrio fischeri MJ11] gi|197317111|gb|ACH66558.1| two-component response regulator [Vibrio fischeri MJ11] Length = 477 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE V ++ +A +++EP ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLELAGYEWVEADSAETALLILKKEPVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKLNWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 Sbjct: 123 T 123 >gi|251797430|ref|YP_003012161.1| response regulator receiver protein [Paenibacillus sp. JDR-2] gi|247545056|gb|ACT02075.1| response regulator receiver protein [Paenibacillus sp. JDR-2] Length = 120 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K GYEVV +GA A +K +E L+ DI MPEM Sbjct: 1 MANRILIVDDAAFMRMMIRDILTKNGYEVVGEAQDGAQAVEKYKELKPDLITMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + +LD + KV+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGISALKEIKKLDGNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIKKTL 119 >gi|317013153|gb|ADU83761.1| response regulator [Helicobacter pylori Lithuania75] Length = 213 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|108761106|ref|YP_632371.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108464986|gb|ABF90171.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 450 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 50/83 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D++ +R FL +AL G+ V + +G A + + LLLTD+ MP MDG+ Sbjct: 3 RILVADDEEGVRSFLAEALEYEGHSVTTAADGEEAARLMARQGVDLLLTDLRMPGMDGLT 62 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L R+ E PD++V+ +T V Sbjct: 63 LLRKVREEQPDVEVVVLTAVGTV 85 >gi|39934836|ref|NP_947112.1| sensor histidine kinase/response regulator [Rhodopseudomonas palustris CGA009] gi|39648686|emb|CAE27208.1| sensor histidine kinase with a PAC motif and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 769 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 + ILL EDD+ +R F + L GY ++ +GA+A +VR PF LLLTDI+MP M Sbjct: 631 TETILLVEDDELVRNFALAQLRGLGYRTIAAADGAAALAEVRRGTPFDLLLTDIIMPGGM 690 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA L P +KV++ +G+ A+ +LSKPF DL V L Sbjct: 691 NGRELADAVARLRP-VKVLYTSGYTENAIMHHGRLDPGVLLLSKPFRRADLARLVRAAL 748 >gi|253700882|ref|YP_003022071.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775732|gb|ACT18313.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 692 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + IL+AEDD + + L + GY ++ NG A K +E + +L+L DI+MP M+G Sbjct: 563 ETILVAEDDLYVLDLVTSVLVQYGYGIIHAANGEQAVRKFQENDQIALVLMDIIMPVMNG 622 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E A + L P+ +++F +G+ A + + A+++ KP L+ +V +L Sbjct: 623 KEAAEKIRRLRPETRILFTSGYTAEIIKSRCELEECAELIMKPVKPALLLKKVREML 679 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++IL+ EDD+ + + + Y + + A +V+ F ++LTD ++P+ Sbjct: 8 KRILIVEDDESHAELIRRGFSETSDYYRLTVATSMQEAITRVQTNDFDIVLTDYLLPDGK 67 Query: 61 GIELARRATELDP 73 G++L ++ + P Sbjct: 68 GVDLVLKSGQTTP 80 >gi|288553051|ref|YP_003424986.1| chemotaxis response protein [Bacillus pseudofirmus OF4] gi|288544211|gb|ADC48094.1| chemotaxis response protein [Bacillus pseudofirmus OF4] Length = 120 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M K+L+ +D MR + L K G++VV N+GA A +K E L+ DI MPEM Sbjct: 1 MAHKVLIVDDAAFMRMMIKDILTKNGFDVVGEANDGAQAVEKYEELSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + ++DP+ KV+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGITSLKEIKKIDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVLEAIKKTL 119 >gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 247 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ EDD +R L ALG AGY V S ++G +A + L++ D+++P+ DG Sbjct: 10 GHTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R V+F+T A V + ++KPFH+++++ V +L Sbjct: 70 FRLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAIL 126 >gi|196232271|ref|ZP_03131125.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196223639|gb|EDY18155.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 759 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 + +L+ EDD +R+ L GY++ + A + R F L++TD++MP+M G Sbjct: 637 ESVLMVEDDSSVRKLAASLLRSCGYQIQEAVDAIEALAIIDRHGAFDLVITDVIMPQMSG 696 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + + P +V+F++G+ AL + L KPF L +V +L Sbjct: 697 KELYSKIMQRAPGARVLFMSGYTDDALAHHGVLDEGLHFLEKPFSPARLAQKVRTVL 753 >gi|189424627|ref|YP_001951804.1| response regulator receiver protein [Geobacter lovleyi SZ] gi|189420886|gb|ACD95284.1| response regulator receiver protein [Geobacter lovleyi SZ] Length = 262 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +ILL +D+ + L + ++GY+V+SC +G + EPF L+++D MPEM+G+ Sbjct: 6 RILLVDDEQSVLNALHRFFRRSGYQVISCTSGRDGLTLLESSEPFQLVISDYRMPEMNGV 65 Query: 63 ELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E + PD M ++GFA A+ +N K + KP+ L+ V + I Sbjct: 66 EFLKAVRIRWPDTVRMVLSGFADTSAIISATNEGNIYKFIPKPWDEEFLLQSVQEAIEIH 125 >gi|115374136|ref|ZP_01461423.1| sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1] gi|310820905|ref|YP_003953263.1| Sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1] gi|115368803|gb|EAU67751.1| sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1] gi|309393977|gb|ADO71436.1| Sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1] Length = 547 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 62/117 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ +R FL + LG AGY+V +NGA A + + F +L D+VMPEM G+E+ Sbjct: 6 VLVVDDEESVRTFLGELLGGAGYQVRCASNGAQALEMLEGGSFDAVLLDVVMPEMSGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR + V+ ++ A + + L+KPF +L + + R L + Sbjct: 66 LRRYRSSGGNAPVIVLSALAGADDAVRAMKMGASDYLAKPFGNDELEDVLARALGTR 122 >gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 1/111 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KILL EDD + RF+ L GY+V +NG + ++E+ F LLL DI++P ++ Sbjct: 1 MDKKILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E+ + E D+ ++ +T + + L+KPF + +L+ Sbjct: 61 GMEVCSQIREF-SDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELL 110 >gi|189909647|ref|YP_001961202.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774323|gb|ABZ92624.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 505 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 13/126 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 KIL+ +D++D+R L + L + GY++ + + A ++ E FSL+++DI+M M GI Sbjct: 5 KILIIDDEEDIRIALKRVLSREGYQIELSESASDAVKRIETGETFSLVISDILMSGMSGI 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVNR 116 + + E + +L V+ ITG NP+ ++ + A + +SKP L++ V R Sbjct: 65 DFTKFIAEKNINLPVILITG------NPNLSSAEAAIRYHAYEYISKPVDRTQLLSVVKR 118 Query: 117 LLTIKN 122 L +KN Sbjct: 119 ALEVKN 124 >gi|295116180|emb|CBL37027.1| two component transcriptional regulator, AraC family [butyrate-producing bacterium SM4/1] Length = 534 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++A+D++++RR +I+ + + G++VV NG A + V E+ LLLTDI MP + G Sbjct: 4 VVVADDEEELRRAIIRRINWEEIGFQVVGEAENGIEALELVGEKEPDLLLTDIRMPFISG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +ELAR+ E+ P ++ F++GF + + + KP + DL + Sbjct: 64 VELARQVREIRPATQIAFLSGFDDFSYAQQAIQYNIISYMLKPISMADLTENL 116 >gi|146343422|ref|YP_001208470.1| histidine kinase [Bradyrhizobium sp. ORS278] gi|146196228|emb|CAL80255.1| putative sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Bradyrhizobium sp. ORS278] Length = 534 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 +++IL+ ED D+ L GY N +A + + E F LL TD+VMP M Sbjct: 409 SERILIVEDRTDVAELARSILEDFGYRTEVATNAHAALELLDSEIRFDLLFTDLVMPGGM 468 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G LAR A + P LKV+ TG++ A+ ++++KP+ DLV V +LL Sbjct: 469 NGTVLAREARKRQPKLKVLLTTGYSDAAVERADANIGEFEIINKPYRRTDLVRRVRQLL 527 >gi|95929451|ref|ZP_01312194.1| response regulator receiver protein [Desulfuromonas acetoxidans DSM 684] gi|95134567|gb|EAT16223.1| response regulator receiver protein [Desulfuromonas acetoxidans DSM 684] Length = 129 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+++ R L K L +AGY+ + G A D + P +++L+DI MP+MDG+ Sbjct: 7 KILVVDDEENSRVCLGKLLTQAGYDATCVSGGHEALDYLEHHPVNIVLSDIRMPDMDGLS 66 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L E P+ +V+ +T V Sbjct: 67 LLNEIHEHYPETRVVMVTAHGEV 89 >gi|75765162|ref|ZP_00744427.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487350|gb|EAO51301.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 125 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 4 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ +T + + + ++ +KPF + ++ V L + Sbjct: 64 GIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELAV 123 Query: 121 K 121 + Sbjct: 124 E 124 >gi|262195507|ref|YP_003266716.1| Fis family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262078854|gb|ACY14823.1| two component, sigma54 specific, transcriptional regulator, Fis family [Haliangium ochraceum DSM 14365] Length = 453 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+ +DD M + AL + GYEV S + SA V + F +++TDI + + Sbjct: 1 MNASVLVVDDDRAMCELVQDALSRNGYEVTSQLDAESALFSVDTKDFDVVITDIKLQSAN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL RR E PD+ V+ T F ++ + ++KP L L V R + Sbjct: 61 GLELCRRVNEKRPDVPVVVFTAFGSIDTAVGAIRAGAYDYITKPVDLESLALTVRRAI 118 >gi|291087145|ref|ZP_06571825.1| putative response regulator receiver domain protein [Clostridium sp. M62/1] gi|291075773|gb|EFE13137.1| putative response regulator receiver domain protein [Clostridium sp. M62/1] Length = 546 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++A+D++++RR +I+ + + G++VV NG A + V E+ LLLTDI MP + G Sbjct: 16 VVVADDEEELRRAIIRRINWEEIGFQVVGEAENGIEALELVGEKEPDLLLTDIRMPFISG 75 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +ELAR+ E+ P ++ F++GF + + + KP + DL + Sbjct: 76 VELARQVREIRPATQIAFLSGFDDFSYAQQAIQYNIISYMLKPISMADLTENL 128 >gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 226 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GYE+V NNG + + ++ L+L DI++PE++G+E Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR D+ ++ +T AV ++KPF + +L+ + R++ Sbjct: 63 VLRRLRR-TSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|222054943|ref|YP_002537305.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221564232|gb|ACM20204.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 661 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + ILLAEDD +R + L GY V+ +G A D +E L+L D++MP+ Sbjct: 541 TETILLAEDDQAIRDMEVSILQDFGYLVMVARDGQEAVDIFQENRGNIDLVLLDMIMPKK 600 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E R L P +KV+FI+G+ A + K +++ KP +L +V LL Sbjct: 601 NGSEACREIRVLAPQVKVLFISGYTADLIQEKGLLEKGVELVIKPVSPPELARKVRELL 659 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D ++ L L G ++V +G A ++ F+L+L D+ MPEMDG E Sbjct: 8 ILLVDDREENLTALEALLSDMGLDMVKALSGNDALRLALKQDFALVLMDVQMPEMDGFET 67 Query: 65 AR--RATELDPDLKVMFIT 81 A R+ L ++F+T Sbjct: 68 AELMRSNPKTRHLPIIFVT 86 >gi|295091469|emb|CBK77576.1| two component transcriptional regulator, AraC family [Clostridium cf. saccharolyticum K10] Length = 534 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++A+D++++RR +I+ + + G++VV NG A + V E+ LLLTDI MP + G Sbjct: 4 VVVADDEEELRRAIIRRINWEEIGFQVVGEAENGIEALELVGEKEPDLLLTDIRMPFISG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +ELAR+ E+ P ++ F++GF + + + KP + DL + Sbjct: 64 VELARQVREIRPATQIAFLSGFDDFSYAQQAIQYNIISYMLKPISMADLTENL 116 >gi|256420288|ref|YP_003120941.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035196|gb|ACU58740.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 234 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 10/116 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +ILL EDD ++ K L +AGY+VV +G A+++ + F + L D+VMP+ D Sbjct: 1 MKARILLVEDDQNVGAVTKKRLEEAGYDVVHSTDGQMAWEQFQSRTFDICLLDVVMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLV 111 G LA + + + ++F+T A D + K K ++KPF +++L+ Sbjct: 61 GFTLAEQIRRKNDFIPILFLTSKAL-----DEDKIKGFKTGADDYITKPFSMQELL 111 >gi|120602164|ref|YP_966564.1| Fis family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120562393|gb|ABM28137.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris DP4] Length = 462 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 54/110 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL EDD + L +AL + GY V + N VR F L+LTD+++P + Sbjct: 1 MKGHILLIEDDTAFQGMLREALEERGYRVTAVNRAEDGVRIVRSGDFDLVLTDVMLPGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E R E P ++ +T F+ L ++ SKPF L++L Sbjct: 61 GVEAIPRLREAAPGTDIVVMTAFSTRELALEAVKLGAYDFFSKPFSLKEL 110 >gi|90422084|ref|YP_530454.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90104098|gb|ABD86135.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 821 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMD 60 ++L+ ED++D+ RF + L GY++ N A + E+ F+ L+ +D++MP M+ Sbjct: 699 HRVLVVEDNEDVGRFSTELLRDLGYDIRWVGNANEALAAISEDEFAFDLVFSDVIMPGMN 758 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELA E P L V+ +G++ V NA +++ KP+ + L + R + Sbjct: 759 GVELATLIRERYPGLPVVLTSGYSTVLA---ENAHHGFELIQKPYSVELLSRTLRRAI 813 >gi|15643463|ref|NP_228509.1| chemotaxis response regulator CheY [Thermotoga maritima MSB8] gi|148269375|ref|YP_001243835.1| response regulator receiver protein [Thermotoga petrophila RKU-1] gi|170288033|ref|YP_001738271.1| response regulator receiver protein [Thermotoga sp. RQ2] gi|281411928|ref|YP_003346007.1| response regulator receiver protein [Thermotoga naphthophila RKU-10] gi|3023497|sp|Q56312|CHEY_THEMA RecName: Full=Chemotaxis protein CheY gi|2781153|pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii) gi|2781154|pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii) gi|2781158|pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (Mg-Iv) gi|2781159|pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (Mg-Iv) gi|157833972|pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I) gi|157836389|pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii) gi|4981223|gb|AAD35782.1|AE001741_15 chemotaxis response regulator CheY [Thermotoga maritima MSB8] gi|940149|gb|AAA96389.1| CheY [Thermotoga maritima] gi|147734919|gb|ABQ46259.1| response regulator receiver protein [Thermotoga petrophila RKU-1] gi|170175536|gb|ACB08588.1| response regulator receiver protein [Thermotoga sp. RQ2] gi|281373031|gb|ADA66593.1| response regulator receiver protein [Thermotoga naphthophila RKU-10] Length = 120 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR L + KAGYEV NG A +K +E ++ DI MPEM Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +GI+ + ++DP+ K++ + A+ ++ + KPF +V +N++ Sbjct: 61 NGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 >gi|332884908|gb|EGK05163.1| hypothetical protein HMPREF9456_03076 [Dysgonomonas mossii DSM 22836] Length = 228 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 11/121 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ F+ + L +G+E CN+G A++K++ + L++ DI+MP M G+E Sbjct: 2 KILIVEDEQNISSFIERGLNISGFETEICNDGLHAWEKLQITDYDLIIMDIIMPFMSGLE 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 L + + K +IT A++ D NA + KPF L +L +N L Sbjct: 62 LCKAYRQ-----KFGYITPVILLTALSTTEDIVKGLNAGADDYIVKPFKLVELEARINAL 116 Query: 118 L 118 L Sbjct: 117 L 117 >gi|311278811|ref|YP_003941042.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter cloacae SCF1] gi|308748006|gb|ADO47758.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter cloacae SCF1] Length = 461 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E +NG +A + + P ++L DI MPEM+GI+ Sbjct: 6 RILIVDDEDNVRRMLATAFSLQGHETHCASNGRTALEHFADTPPDVVLMDIRMPEMNGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P + ++ +T +A V ++ + KPF L +L + R + ++ Sbjct: 66 TLKVMRAQQPRIPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRAMQMQ 123 >gi|218263043|ref|ZP_03477288.1| hypothetical protein PRABACTJOHN_02969 [Parabacteroides johnsonii DSM 18315] gi|218222976|gb|EEC95626.1| hypothetical protein PRABACTJOHN_02969 [Parabacteroides johnsonii DSM 18315] Length = 1318 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 19/124 (15%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED +DMR F+ + L + Y+VV NG A D VR+ +L+++D++MP MDG EL Sbjct: 1069 ILIVEDQNDMRHFIARELAEM-YQVVEAENGKVALDLVRKNTVNLIISDVMMPIMDGFEL 1127 Query: 65 ARRATELDPDLKVMFITGFAAVA----------LNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ D+ V I A LN ++A + KPF + L +V Sbjct: 1128 ---CNEVKNDVNVSHIPFILLTAQHNLQSRLKGLNTGADA-----YMEKPFSIELLTAQV 1179 Query: 115 NRLL 118 + LL Sbjct: 1180 SNLL 1183 >gi|118480370|ref|YP_897521.1| stage 0 sporulation protein F [Bacillus thuringiensis str. Al Hakam] gi|118419595|gb|ABK88014.1| stage 0 sporulation protein F [Bacillus thuringiensis str. Al Hakam] Length = 125 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 4 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ +T + + + ++ +KPF + ++ V L + Sbjct: 64 GIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELAV 123 Query: 121 K 121 + Sbjct: 124 E 124 >gi|114777749|ref|ZP_01452709.1| hypothetical protein SPV1_08776 [Mariprofundus ferrooxydans PV-1] gi|114551965|gb|EAU54499.1| hypothetical protein SPV1_08776 [Mariprofundus ferrooxydans PV-1] Length = 363 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDGI 62 +LL +D+ +R + + L GY VVS +G A Y ++ +++L+D+VMP M GI Sbjct: 246 VLLVDDETVVRDTVGEVLDSLGYRVVSACDGKEALDYYHAHQDEIAIVLSDVVMPGMGGI 305 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ +L D+ + +TG+ + + +A N ++L KP + L + +++ Sbjct: 306 ELIQKIRQLGSDVPTILLTGYDFSGRSDEVDALDNCELLGKPVAVASLSRLIRKMI 361 >gi|297568853|ref|YP_003690197.1| GAF sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924768|gb|ADH85578.1| GAF sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 577 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL +D+ + + L K GY V + N A +R P + LL+TD MP ++ Sbjct: 446 ETILLVDDELPVVQAFAPNLEKLGYRVDTTTNSEEALAMIRRSPKAYDLLITDYNMPRLN 505 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELAR+ + P L ++ TGF+ L+ + A A +SKPF + ++ + L Sbjct: 506 GLELARQVKQTVPQLPIILCTGFSGY-LDDEQQAQDIATCISKPFSIGEIAAVIRNTL 562 >gi|322418221|ref|YP_004197444.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320124608|gb|ADW12168.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 453 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 12/130 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GY+V + +GA+ E L++TD+ MP M Sbjct: 1 MPPKILIIDDDSSLRRVLEYNLQQEGYDVYTAADGAAGLQLFEERSPQLVITDLKMPGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL---------- 110 G E+ E P V+ +T F A+ ++ L+KPF+ +L Sbjct: 61 GFEVLSTVKERAPSTVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKGLQL 120 Query: 111 --VNEVNRLL 118 ++E NRLL Sbjct: 121 QGLSEENRLL 130 >gi|158520240|ref|YP_001528110.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158509066|gb|ABW66033.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 131 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 62/110 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++KIL+ +D+ R + + + K GY V ++ +A ++EE F L++TD+ MP MD Sbjct: 2 IDKKILVIDDEGAQRDVMERFIPKLGYAVRVADSAETALAVLKEEAFPLVITDLNMPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+EL RR +LD + + ++G+ A +A LSKP + R L Sbjct: 62 GLELCRRIKQLDAGIIIYALSGYIASFDEAKLDACGFDGYLSKPANARVL 111 >gi|163943024|ref|YP_001647908.1| response regulator receiver protein [Bacillus weihenstephanensis KBAB4] gi|229014505|ref|ZP_04171623.1| Sporulation initiation phosphotransferase F [Bacillus mycoides DSM 2048] gi|229020556|ref|ZP_04177299.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH1273] gi|229026775|ref|ZP_04183107.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH1272] gi|229033969|ref|ZP_04188922.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH1271] gi|229064986|ref|ZP_04200284.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH603] gi|229136155|ref|ZP_04264908.1| Sporulation initiation phosphotransferase F [Bacillus cereus BDRD-ST196] gi|229164285|ref|ZP_04292217.1| Sporulation initiation phosphotransferase F [Bacillus cereus R309803] gi|229170045|ref|ZP_04297736.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH621] gi|163865221|gb|ABY46280.1| response regulator receiver protein [Bacillus weihenstephanensis KBAB4] gi|228613392|gb|EEK70526.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH621] gi|228619168|gb|EEK76062.1| Sporulation initiation phosphotransferase F [Bacillus cereus R309803] gi|228647314|gb|EEL03396.1| Sporulation initiation phosphotransferase F [Bacillus cereus BDRD-ST196] gi|228716287|gb|EEL67999.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH603] gi|228728344|gb|EEL79367.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH1271] gi|228734498|gb|EEL85160.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH1272] gi|228740742|gb|EEL90997.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH1273] gi|228746855|gb|EEL96740.1| Sporulation initiation phosphotransferase F [Bacillus mycoides DSM 2048] Length = 122 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ +T + + + ++ +KPF + ++ V L + Sbjct: 61 GIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRDQLAV 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 233 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+DD +R+ L L + GY V+ +G A + + +EP L + DI+MP DG + Sbjct: 11 RVLVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIELAVVDIMMPNKDGYQ 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R E D DL V+ +T + L+KPF ++L+ + LL Sbjct: 71 LCREIRE-DYDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALL 124 >gi|330808213|ref|YP_004352675.1| wo-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376321|gb|AEA67671.1| wo-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 464 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 57/116 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L AG++ + + A V E FSL+++D+ MP MD Sbjct: 1 MAIKVLLVEDDRALREALADTLVLAGHDYAAVGSAEEALLAVGREAFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L++ V R Sbjct: 61 GHQLLSLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVAR 116 >gi|322804561|emb|CBZ02112.1| transcriptional regulatory protein cssR [Clostridium botulinum H04402 065] Length = 225 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +++++ P L + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIERIKDVP-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|253699328|ref|YP_003020517.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774178|gb|ACT16759.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 770 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL +D++D+ K L + GY+V + +G A + R P F L++TD MP M G Sbjct: 645 ILFVDDEEDVVFGCKKMLERLGYQVTTGADGVQALELFRGNPQAFDLVVTDQTMPRMTGT 704 Query: 63 ELARRATELDPDLKVMFITGFAAVA----LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL+R ++ PD+ V+ TG A A L ++ ++ KP + + + R+L Sbjct: 705 ELSRELLQIRPDIPVILCTGLGAAAEKAQLKEEAEQAGIRELALKPLDREEFASTIRRVL 764 Query: 119 TIK 121 + Sbjct: 765 AAR 767 >gi|187777094|ref|ZP_02993567.1| hypothetical protein CLOSPO_00639 [Clostridium sporogenes ATCC 15579] gi|187774022|gb|EDU37824.1| hypothetical protein CLOSPO_00639 [Clostridium sporogenes ATCC 15579] Length = 224 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +K+++ P L + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIEKIKDVP-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIEAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 232 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG + + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|30023367|ref|NP_834998.1| sporulation initiation phosphotransferase F [Bacillus cereus ATCC 14579] gi|30265360|ref|NP_847737.1| stage 0 sporulation protein F [Bacillus anthracis str. Ames] gi|42784511|ref|NP_981758.1| stage 0 sporulation protein F [Bacillus cereus ATCC 10987] gi|47530902|ref|YP_022251.1| stage 0 sporulation protein F [Bacillus anthracis str. 'Ames Ancestor'] gi|47569761|ref|ZP_00240433.1| chemotaxis response regulator [Bacillus cereus G9241] gi|49188171|ref|YP_031424.1| stage 0 sporulation protein F [Bacillus anthracis str. Sterne] gi|49480418|ref|YP_039329.1| stage 0 sporulation protein F [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140225|ref|YP_086605.1| stage 0 sporulation protein F [Bacillus cereus E33L] gi|65317314|ref|ZP_00390273.1| COG0784: FOG: CheY-like receiver [Bacillus anthracis str. A2012] gi|165871254|ref|ZP_02215903.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0488] gi|167635771|ref|ZP_02394081.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0442] gi|167640394|ref|ZP_02398658.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0193] gi|170688173|ref|ZP_02879384.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0465] gi|177651946|ref|ZP_02934529.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0174] gi|190569101|ref|ZP_03022000.1| sporulation initiation phosphotransferase F [Bacillus anthracis Tsiankovskii-I] gi|196036944|ref|ZP_03104324.1| sporulation initiation phosphotransferase F [Bacillus cereus W] gi|196041017|ref|ZP_03108314.1| sporulation initiation phosphotransferase F [Bacillus cereus NVH0597-99] gi|196045429|ref|ZP_03112660.1| sporulation initiation phosphotransferase F [Bacillus cereus 03BB108] gi|206970192|ref|ZP_03231145.1| sporulation initiation phosphotransferase F [Bacillus cereus AH1134] gi|206975822|ref|ZP_03236733.1| sporulation initiation phosphotransferase F [Bacillus cereus H3081.97] gi|217962825|ref|YP_002341403.1| sporulation initiation phosphotransferase F [Bacillus cereus AH187] gi|218234868|ref|YP_002370113.1| sporulation initiation phosphotransferase F [Bacillus cereus B4264] gi|218906515|ref|YP_002454349.1| sporulation initiation phosphotransferase F [Bacillus cereus AH820] gi|222098808|ref|YP_002532866.1| stage 0 sporulation protein f [Bacillus cereus Q1] gi|225867318|ref|YP_002752696.1| sporulation initiation phosphotransferase F [Bacillus cereus 03BB102] gi|227818099|ref|YP_002818108.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. CDC 684] gi|228903811|ref|ZP_04067927.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis IBL 4222] gi|228911175|ref|ZP_04074981.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis IBL 200] gi|228917945|ref|ZP_04081481.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228924072|ref|ZP_04087348.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228930345|ref|ZP_04093349.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936621|ref|ZP_04099415.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228942483|ref|ZP_04105020.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228949057|ref|ZP_04111329.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955584|ref|ZP_04117585.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961600|ref|ZP_04123209.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar pakistani str. T13001] gi|228968465|ref|ZP_04129454.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar sotto str. T04001] gi|228975415|ref|ZP_04135971.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228983200|ref|ZP_04143439.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis Bt407] gi|228988563|ref|ZP_04148650.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229051007|ref|ZP_04194555.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH676] gi|229072803|ref|ZP_04206002.1| Sporulation initiation phosphotransferase F [Bacillus cereus F65185] gi|229076550|ref|ZP_04209510.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock4-18] gi|229082550|ref|ZP_04215013.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock4-2] gi|229094449|ref|ZP_04225521.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock3-42] gi|229099769|ref|ZP_04230694.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock3-29] gi|229105928|ref|ZP_04236552.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock3-28] gi|229112749|ref|ZP_04242282.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock1-15] gi|229118831|ref|ZP_04248180.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock1-3] gi|229124840|ref|ZP_04254018.1| Sporulation initiation phosphotransferase F [Bacillus cereus 95/8201] gi|229130585|ref|ZP_04259541.1| Sporulation initiation phosphotransferase F [Bacillus cereus BDRD-Cer4] gi|229142079|ref|ZP_04270604.1| Sporulation initiation phosphotransferase F [Bacillus cereus BDRD-ST26] gi|229147876|ref|ZP_04276217.1| Sporulation initiation phosphotransferase F [Bacillus cereus BDRD-ST24] gi|229153499|ref|ZP_04281677.1| Sporulation initiation phosphotransferase F [Bacillus cereus m1550] gi|229158897|ref|ZP_04286954.1| Sporulation initiation phosphotransferase F [Bacillus cereus ATCC 4342] gi|229181585|ref|ZP_04308910.1| Sporulation initiation phosphotransferase F [Bacillus cereus 172560W] gi|229187562|ref|ZP_04314702.1| Sporulation initiation phosphotransferase F [Bacillus cereus BGSC 6E1] gi|229193589|ref|ZP_04320533.1| Sporulation initiation phosphotransferase F [Bacillus cereus ATCC 10876] gi|229199461|ref|ZP_04326124.1| Sporulation initiation phosphotransferase F [Bacillus cereus m1293] gi|229603895|ref|YP_002869551.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0248] gi|254687222|ref|ZP_05151080.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. CNEVA-9066] gi|254735265|ref|ZP_05192974.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. Western North America USA6153] gi|254744468|ref|ZP_05202148.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. Kruger B] gi|254755806|ref|ZP_05207838.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. Vollum] gi|254762146|ref|ZP_05213992.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. Australia 94] gi|296505760|ref|YP_003667460.1| sporulation initiation phosphotransferase F [Bacillus thuringiensis BMB171] gi|300117850|ref|ZP_07055617.1| sporulation initiation phosphotransferase F [Bacillus cereus SJ1] gi|301056804|ref|YP_003795015.1| stage 0 sporulation protein F [Bacillus anthracis CI] gi|29898928|gb|AAP12199.1| Sporulation initiation phosphotransferase F [Bacillus cereus ATCC 14579] gi|30260038|gb|AAP29223.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. Ames] gi|42740443|gb|AAS44366.1| stage 0 sporulation protein F [Bacillus cereus ATCC 10987] gi|47506050|gb|AAT34726.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. 'Ames Ancestor'] gi|47553557|gb|EAL11936.1| chemotaxis response regulator [Bacillus cereus G9241] gi|49182098|gb|AAT57474.1| stage 0 sporulation protein F [Bacillus anthracis str. Sterne] gi|49331974|gb|AAT62620.1| stage 0 sporulation protein F [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973694|gb|AAU15244.1| stage 0 sporulation protein F [Bacillus cereus E33L] gi|164712921|gb|EDR18449.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0488] gi|167511614|gb|EDR86996.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0193] gi|167528880|gb|EDR91637.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0442] gi|170667866|gb|EDT18618.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0465] gi|172082650|gb|EDT67714.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0174] gi|190559769|gb|EDV13755.1| sporulation initiation phosphotransferase F [Bacillus anthracis Tsiankovskii-I] gi|195990446|gb|EDX54434.1| sporulation initiation phosphotransferase F [Bacillus cereus W] gi|196023636|gb|EDX62312.1| sporulation initiation phosphotransferase F [Bacillus cereus 03BB108] gi|196028185|gb|EDX66795.1| sporulation initiation phosphotransferase F [Bacillus cereus NVH0597-99] gi|206734769|gb|EDZ51938.1| sporulation initiation phosphotransferase F [Bacillus cereus AH1134] gi|206745916|gb|EDZ57312.1| sporulation initiation phosphotransferase F [Bacillus cereus H3081.97] gi|217063585|gb|ACJ77835.1| sporulation initiation phosphotransferase F [Bacillus cereus AH187] gi|218162825|gb|ACK62817.1| sporulation initiation phosphotransferase F [Bacillus cereus B4264] gi|218538011|gb|ACK90409.1| sporulation initiation phosphotransferase F [Bacillus cereus AH820] gi|221242867|gb|ACM15577.1| stage 0 sporulation protein F [Bacillus cereus Q1] gi|225786860|gb|ACO27077.1| sporulation initiation phosphotransferase F [Bacillus cereus 03BB102] gi|227007058|gb|ACP16801.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. CDC 684] gi|228584037|gb|EEK42192.1| Sporulation initiation phosphotransferase F [Bacillus cereus m1293] gi|228589894|gb|EEK47769.1| Sporulation initiation phosphotransferase F [Bacillus cereus ATCC 10876] gi|228595929|gb|EEK53609.1| Sporulation initiation phosphotransferase F [Bacillus cereus BGSC 6E1] gi|228601781|gb|EEK59277.1| Sporulation initiation phosphotransferase F [Bacillus cereus 172560W] gi|228624508|gb|EEK81278.1| Sporulation initiation phosphotransferase F [Bacillus cereus ATCC 4342] gi|228630103|gb|EEK86754.1| Sporulation initiation phosphotransferase F [Bacillus cereus m1550] gi|228635526|gb|EEK92015.1| Sporulation initiation phosphotransferase F [Bacillus cereus BDRD-ST24] gi|228641368|gb|EEK97674.1| Sporulation initiation phosphotransferase F [Bacillus cereus BDRD-ST26] gi|228652924|gb|EEL08806.1| Sporulation initiation phosphotransferase F [Bacillus cereus BDRD-Cer4] gi|228658631|gb|EEL14293.1| Sporulation initiation phosphotransferase F [Bacillus cereus 95/8201] gi|228664632|gb|EEL20125.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock1-3] gi|228670730|gb|EEL26041.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock1-15] gi|228677502|gb|EEL31755.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock3-28] gi|228683658|gb|EEL37611.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock3-29] gi|228688986|gb|EEL42813.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock3-42] gi|228700982|gb|EEL53505.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock4-2] gi|228706583|gb|EEL58796.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock4-18] gi|228710294|gb|EEL62269.1| Sporulation initiation phosphotransferase F [Bacillus cereus F65185] gi|228722316|gb|EEL73713.1| Sporulation initiation phosphotransferase F [Bacillus cereus AH676] gi|228771180|gb|EEM19659.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776528|gb|EEM24856.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis Bt407] gi|228784397|gb|EEM32420.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791245|gb|EEM38858.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar sotto str. T04001] gi|228798082|gb|EEM45086.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804087|gb|EEM50705.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228810630|gb|EEM56979.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817225|gb|EEM63313.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823056|gb|EEM68894.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829331|gb|EEM74964.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228835562|gb|EEM80927.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228841742|gb|EEM86853.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228848538|gb|EEM93386.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis IBL 200] gi|228855838|gb|EEN00382.1| Sporulation initiation phosphotransferase F [Bacillus thuringiensis IBL 4222] gi|229268303|gb|ACQ49940.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0248] gi|296326812|gb|ADH09740.1| sporulation initiation phosphotransferase F [Bacillus thuringiensis BMB171] gi|298724714|gb|EFI65389.1| sporulation initiation phosphotransferase F [Bacillus cereus SJ1] gi|300378973|gb|ADK07877.1| stage 0 sporulation protein F [Bacillus cereus biovar anthracis str. CI] gi|324329286|gb|ADY24546.1| stage 0 sporulation protein F [Bacillus thuringiensis serovar finitimus YBT-020] gi|326943134|gb|AEA19030.1| sporulation initiation phosphotransferase F [Bacillus thuringiensis serovar chinensis CT-43] Length = 122 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ +T + + + ++ +KPF + ++ V L + Sbjct: 61 GIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELAV 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|328952706|ref|YP_004370040.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328453030|gb|AEB08859.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 449 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 62/118 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L L + GYEV + +G +A+ ++E + ++L D+ MP MDG+ L Sbjct: 9 ILVVDDELSIRESLSGWLQQDGYEVATAADGIAAWAMIQENRYDIMLIDVKMPRMDGLSL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ E D V+ +T + ++ +S L KPF L +L + +L I+ Sbjct: 69 LKKLRENDHTEAVVMMTAYGSIRDAVESMRLGAYDYLLKPFELEELSLTIEKLAGIQT 126 >gi|218506666|ref|ZP_03504544.1| putative two-component sensor histidine kinase protein [Rhizobium etli Brasil 5] Length = 279 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 +ILL +DD + ++ L G++VV N+G+ A + +R F +++TD MP M G Sbjct: 146 RILLVDDDTLIAMSSVEMLEDLGHDVVEANSGSQALEVIRSGGHFDVMITDYSMPGMTGA 205 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +LA+ + P L ++ TG+A + + N P+ L KP++ LV E R Sbjct: 206 QLAQAVRAIRPALPIVLATGYADLPAGAEVNLPR----LGKPYNQDQLVREFTR 255 >gi|170721753|ref|YP_001749441.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759756|gb|ACA73072.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 689 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ +D+ +R F+ + LG GY V+ + + +R + LL+TDI +P +DG Sbjct: 569 VLVVDDEPSVRMFVSETLGSCGYVVIEAADSLAGLQLLRSDTRIDLLVTDIGLPGGIDGR 628 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + A P L V+F+TG+A + ++ + VL+KPF L L VN LL Sbjct: 629 QMTKTARLCRPGLPVLFMTGYAQPHVLDEAPMEAHTAVLTKPFSLEALTLNVNALL 684 >gi|162456355|ref|YP_001618722.1| hypothetical protein sce8072 [Sorangium cellulosum 'So ce 56'] gi|161166937|emb|CAN98242.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 156 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--------EEPFSLLLTD 53 Q I+LAEDDDD R + AL G+EV NG DKV +P +++D Sbjct: 23 GQHIVLAEDDDDFRSTIAMALRSDGFEVSEARNGLELLDKVAPCLGGNEPPKPIDAIVSD 82 Query: 54 IVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I MP G+E+ E+ V+ IT F L+ + + + V KPF L DL Sbjct: 83 IQMPCFSGMEILEGLAEVRRRPPVILITAFGHPHLHATARSLGASAVFEKPFDLDDL 139 >gi|46580519|ref|YP_011327.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46449938|gb|AAS96587.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234258|gb|ADP87112.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris RCH1] Length = 462 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 54/110 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL EDD + L +AL + GY V + N VR F L+LTD+++P + Sbjct: 1 MKGHILLIEDDTAFQGMLREALEERGYRVTAVNRAEDGVRIVRSGDFDLVLTDVMLPGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E R E P ++ +T F+ L ++ SKPF L++L Sbjct: 61 GVEAIPRLREAAPGTDIVVMTAFSTRELALEAVKLGAYDFFSKPFSLKEL 110 >gi|39998006|ref|NP_953957.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39984951|gb|AAR36307.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298506947|gb|ADI85670.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 457 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 13/127 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L + L K GY+VVS NG A VREE L+L DI +P + G+E Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQPDLVLLDIQLPGISGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVA-------------LNPDSNAPKNAKVLSKPFHLRDL 110 + E D ++ V+ +T A+ +N N + + V+ K DL Sbjct: 65 ALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMSIVIRKALETSDL 124 Query: 111 VNEVNRL 117 EV RL Sbjct: 125 RREVQRL 131 >gi|16078696|ref|NP_389515.1| regulator of chemotaxis and motility [Bacillus subtilis subsp. subtilis str. 168] gi|221309511|ref|ZP_03591358.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221313835|ref|ZP_03595640.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318758|ref|ZP_03600052.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221323030|ref|ZP_03604324.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|116278|sp|P24072|CHEY_BACSU RecName: Full=Chemotaxis protein CheY homolog gi|142682|gb|AAA22311.1| chemotactic response protein [Bacillus subtilis] gi|2634005|emb|CAB13506.1| regulator of chemotaxis and motility [Bacillus subtilis subsp. subtilis str. 168] Length = 120 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G+EVV+ NGA A +K +E L+ DI MPEM Sbjct: 1 MAHRILIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + ++D +++ + ++ D+ + KPF ++ +N+ L Sbjct: 61 DGITALKEIKQIDAQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTL 119 >gi|218682484|ref|ZP_03530085.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 430 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP MDG Sbjct: 3 DAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L ++ E+DP++ V+ +TG V L + + KPF L + R + Sbjct: 63 MTLMQKIREIDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAM 119 >gi|78777082|ref|YP_393397.1| two component transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78497622|gb|ABB44162.1| two component transcriptional regulator, winged helix family [Sulfurimonas denitrificans DSM 1251] Length = 218 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD + L + L + GY+V S +G AY+K+ F +L D+ +P ++G E Sbjct: 2 KILLLEDDVILSEILYEHLSEKGYDVSSAYDGEDAYEKIINSRFDFMLFDVNVPLLNGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L R E ++ +FIT + L KPF L +L +N LL + N Sbjct: 62 LLRLLGEQHVNIPTIFITSLDSAHDLKRGFDLGCDDYLKKPFDLVELDARINHLLRVHN 120 >gi|86158431|ref|YP_465216.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774942|gb|ABC81779.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 463 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 53/83 (63%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +R L L K GY V +G +A +K++ E +S+L+ D+ MP MDG++ Sbjct: 7 RILVVDDEEIVRESLGGWLEKDGYSVHVAVDGFAALEKLKAERWSILIVDLKMPGMDGLQ 66 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + A +L P+L V+ +T +A V Sbjct: 67 VLEEAKKLQPELAVVIMTAYATV 89 >gi|255322381|ref|ZP_05363527.1| two component transcriptional regulator, winged helix family [Campylobacter showae RM3277] gi|255300754|gb|EET80025.1| two component transcriptional regulator, winged helix family [Campylobacter showae RM3277] Length = 224 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD+++ + + L + G+ ++ +G A + E L++TDI+MP + G E Sbjct: 3 KILVAEDDENLNKIICLKLAQEGFLPLAAFDGEQAIKLLESERADLVITDIMMPGLSGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ LD L V+ IT + + +SKP +L++L+ +N LL Sbjct: 63 LTKQIKLLDESLPVLMITAKSGMEGMEKGFVTGADDYMSKPLNLKELILRINALL 117 >gi|302875761|ref|YP_003844394.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689195|ref|ZP_07631641.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578618|gb|ADL52630.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD D+R L K GY+ +S +G A + + +E L+++DI+MP MDG EL Sbjct: 4 VLVVEDDKDLRGLFCTILTKNGYKAISAEDGEKALEILEKEYVDLVISDIMMPNMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + +L ++ IT A + KP + ++V V LL Sbjct: 64 TKALREANFNLPILMITAKETFADKQKGFLVGTDDYMVKPVDVNEMVLRVGALL 117 >gi|170708042|ref|ZP_02898490.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0389] gi|170127015|gb|EDS95894.1| sporulation initiation phosphotransferase F [Bacillus anthracis str. A0389] Length = 122 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ +T + + + ++ +KPF + ++ V L + Sbjct: 61 GIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELAV 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|150388450|ref|YP_001318499.1| response regulator receiver protein [Alkaliphilus metalliredigens QYMF] gi|149948312|gb|ABR46840.1| response regulator receiver protein [Alkaliphilus metalliredigens QYMF] Length = 120 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ ++L+ +D MR + L K GYEVV NG A +K +E +L + DI MPEM Sbjct: 1 MSNRVLIVDDAGFMRMTIKDVLTKNGYEVVGEAENGLKAVEKFKELEPTLTIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +GIE + ++D + KV+ + ++ ++ + KPF ++ V ++L Sbjct: 61 NGIEAVKEIKKIDANAKVIMCSAMGQKSMVIEAIKAGAKDFIVKPFQEDGVIQAVQKVL 119 >gi|218532021|ref|YP_002422837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524324|gb|ACK84909.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 573 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + L GY + + A+ ++ + LL+TD+ +P M+ Sbjct: 444 ETVLIVDDEPTVRMLITDILEDLGYAAIEAGDSATGLKVLQSDVRIDLLVTDVGLPGGMN 503 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A PDLKV+FITG+A A+ + P VL+KPF + ++ + ++ Sbjct: 504 GRQMADAARNHRPDLKVLFITGYAENAILGNGTLPPGMAVLTKPFAMDNMAARIRSMI 561 >gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 509 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D+ L L AGYE V +G A + V E F L++ DI MP MDG+E Sbjct: 5 KILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAGEQFDLIMLDIKMPRMDGLE 64 Query: 64 -LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L+R + P V+ +T + + D+ +SKPF D++ +V R + I Sbjct: 65 VLSRLKGDETP---VVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAIGI 119 >gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1347 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 46/65 (70%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ D+R++L + LGK Y V+ NG A + ++E+ +L+LTD++MP MDG+ Sbjct: 1099 ESILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIMKEQEINLILTDVMMPVMDGL 1157 Query: 63 ELARR 67 +L ++ Sbjct: 1158 QLCKQ 1162 >gi|302336706|ref|YP_003801912.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301633891|gb|ADK79318.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 121 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ +D +RR + L + GYEV+ ++G K+ E L++TD+ MP MD Sbjct: 1 MTKKVLVVDDSRAIRRSISFVLEQNGYEVLEASDGVVGLAKLEEGTVELIITDVNMPNMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI ++ ELD + ++ +T + ++ D A + KPF L+ V R+ Sbjct: 61 GITFIKKVRELDAFRFVPILVLTTESQKSVMEDGKAAGATGWIVKPFSTDKLMAAVRRV 119 >gi|226947519|ref|YP_002802610.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226842282|gb|ACO84948.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 224 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +++++ P L + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIERIKDVP-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697] gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697] Length = 1347 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 46/65 (70%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ D+R++L + LGK Y V+ NG A + ++E+ +L+LTD++MP MDG+ Sbjct: 1099 ESILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIMKEQEINLILTDVMMPVMDGL 1157 Query: 63 ELARR 67 +L ++ Sbjct: 1158 QLCKQ 1162 >gi|157736305|ref|YP_001488988.1| two-component response regulator [Arcobacter butzleri RM4018] gi|315635436|ref|ZP_07890702.1| two component response regulator [Arcobacter butzleri JV22] gi|157698159|gb|ABV66319.1| two-component response regulator [Arcobacter butzleri RM4018] gi|315480194|gb|EFU70861.1| two component response regulator [Arcobacter butzleri JV22] Length = 214 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ + + K L Y V+S +GA AY+K+ E FS + DI +P +DGI Sbjct: 2 KILLLEDNQKLNETITKRLKMKNYTVISFTDGAEAYEKIT-EGFSCFILDINVPNVDGIN 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + ++ E + V+ I+ + + S L KPF + +L ++ +L IKN Sbjct: 61 ILKKIREFYEIVPVIIISASVELDIIKQSYDFGCNDYLKKPFFIDELEIKIEKLCQIKN 119 >gi|85717409|ref|ZP_01048359.1| hypothetical protein NB311A_09911 [Nitrobacter sp. Nb-311A] gi|85695764|gb|EAQ33672.1| hypothetical protein NB311A_09911 [Nitrobacter sp. Nb-311A] Length = 692 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 IL+ +DD + + L G+EV+ N+G A + +R+ LL+TD MP M+G + Sbjct: 569 ILVVDDDALIAMSTVDMLEDLGHEVIEANSGDRALEILRQNRTIDLLVTDYSMPRMNGAQ 628 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A ++ P+L V+ TG+A + ++ PK + KP+ L E+ R++ Sbjct: 629 LAAAARQIRPELPVLLATGYAELPTGSVNDLPK----IGKPYQQDQLSTEIKRVM 679 >gi|307824966|ref|ZP_07655188.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734013|gb|EFO04868.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1759 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++L+ +D ++ R LI LG+ G+E NG + D V + L+L D+VMPEMD Sbjct: 1533 LRRRVLVVDDANENRTLLIDILGRLGFETFEAANGRACLDSVEAQTPDLILLDMVMPEMD 1592 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E RR + I +A A D A V LSKP ++ L+ ++ L Sbjct: 1593 GLETTRRLRCMQ-GFGQTPIIAVSASASGSDVTEAMKAGVNVFLSKPIDIKRLMVQIAVL 1651 Query: 118 LTI 120 L + Sbjct: 1652 LKL 1654 >gi|168177638|ref|ZP_02612302.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670531|gb|EDT82505.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 224 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +++++ P L + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIERIKDVP-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|153940303|ref|YP_001389664.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936199|gb|ABS41697.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295317754|gb|ADF98131.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 224 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +++++ P L + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIERIKDVP-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|218887199|ref|YP_002436520.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758153|gb|ACL09052.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 515 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 56/104 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R L ALG+ G+E + NGA A + + F L+LTD++M MDG++ Sbjct: 38 RILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGLD 97 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 L R PD +V+ +TG+ V ++ L KP+ L Sbjct: 98 LLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDL 141 >gi|197121293|ref|YP_002133244.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171142|gb|ACG72115.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 466 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++L+ +DD +R L + L G EV +G +A +K+ +P+ L+LTD+ MP +DG Sbjct: 10 GARVLVVDDDPGVRYTLREILASEGLEVEEATDGEAALEKLGAQPYPLVLTDLRMPRLDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + L R+ T P +V+ IT + ++ KPF +L+ V R Sbjct: 70 MALLRKITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRR 124 >gi|149196336|ref|ZP_01873391.1| cheY-like receiver domain protein [Lentisphaera araneosa HTCC2155] gi|149140597|gb|EDM28995.1| cheY-like receiver domain protein [Lentisphaera araneosa HTCC2155] Length = 371 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ +D+D + LI+ L GY V+ NG A + RE P L++ D+VMPEM+ Sbjct: 252 ETILVVDDEDMIWDVLIENLQNLGYIVLLAENGLDAVEIYRENPGQIDLVILDMVMPEMN 311 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E +LD ++KV+ +GF A D A L KP+ + +L ++ LL Sbjct: 312 GREAFHELKKLDDEVKVLISSGFMAENEAGDLIKAGAAAFLRKPYRMIELARKLRELL 369 >gi|148255610|ref|YP_001240195.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407783|gb|ABQ36289.1| putative sensor histidine kinase with a CHASE3 and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 761 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-M 59 + I + EDD ++ F++ L GY ++ + G A K+ + F LL TD++MP + Sbjct: 625 TETIFIVEDDPLVQDFVVAQLQSLGYRTITASTGVEALAKIEAGQTFDLLFTDVIMPGGV 684 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +G ELA P +KV++ +G+ A+ ++A +L+KP+ +L V Sbjct: 685 NGKELAEETLRQRPGMKVLYTSGYTDNAMIEHGGLDQDALLLTKPYRKSELAQMV 739 >gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 2603V/R] gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae NEM316] gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909] gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21] gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B] gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1] gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae CJB111] gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515] gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae 2603V/R] gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316] gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909] gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21] gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515] gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae CJB111] gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1] gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B] gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 229 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GY+VV NG D E+ F L+L D+++PEMD Sbjct: 1 MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T +V ++ + + A + KPF + +L+ V Sbjct: 61 GFEITRRL-QAEKTTYIMMMTARDSV-MDIVAGLDRGADDYIVKPFAIEELLARV 113 >gi|291279140|ref|YP_003495975.1| signal transduction response regulator [Deferribacter desulfuricans SSM1] gi|290753842|dbj|BAI80219.1| signal transduction response regulator [Deferribacter desulfuricans SSM1] Length = 299 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 2/109 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+DD DMR + L K Y+++ +NG A +K++ + S+ L D +MP + GIE Sbjct: 3 KILIADDDKDMRENMRFFLEKLNYDIIEASNGIDALEKIKNDNISIALIDWLMPGLTGIE 62 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L ++ EL+ D + ++ +TG + ++ + KPF ++L Sbjct: 63 LCKKTRELNLDNYVYIIIVTGKSEKEDTLEALHHGADDYIVKPFSFKEL 111 >gi|262195730|ref|YP_003266939.1| Fis family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079077|gb|ACY15046.1| two component, sigma54 specific, transcriptional regulator, Fis family [Haliangium ochraceum DSM 14365] Length = 472 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++RR L L + GY++V +G A K+ ++ +++TD+ MP +DG+E Sbjct: 6 RILVAEDETNLRRVLGAMLARDGYDIVFAVDGKDALGKI-DDSIDVVVTDLKMPNIDGME 64 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 + RR P L V+ IT F +V Sbjct: 65 VLRRVAVEHPTLPVVMITAFGSVG 88 >gi|86606312|ref|YP_475075.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86554854|gb|ABC99812.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 409 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL DDD +R L + AL + GY++V ++G + + ++L D VMP++DG E Sbjct: 28 LLLIADDDPSQRLLTRYALEREGYQLVEADSGLACLEAASRYQPDMVLLDAVMPDLDGFE 87 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR +PDL ++ +T ++ A + + KP H L + LL Sbjct: 88 CCRRLHAQNPDLPILIVTALEDETFVNEAFAAGASDYIPKPIHWSVLKRRLRHLL 142 >gi|330808734|ref|YP_004353196.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376842|gb|AEA68192.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 845 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +LL ED+ +R ++ L GY + + +A + ++ LL+TD+ +P M+G Sbjct: 725 ETVLLVEDEPAVRMLVLDLLQALGYTALEARDAVTALPVLESDQRIDLLVTDVGLPGMNG 784 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + P LKV+F+TG+A A + +++KPF L L N++ ++ Sbjct: 785 RQLAEIARQHRPGLKVLFMTGYAQKAAERQGFLDQGMDMVAKPFSLDLLANKIRTMI 841 >gi|297568633|ref|YP_003689977.1| response regulator receiver sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924548|gb|ADH85358.1| response regulator receiver sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 407 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD + + + L GY + +C++ +A + + L+L+DI MPEM GIEL Sbjct: 9 ILLVDDDAKVLKAVKAILEAEGYPLEACHDPLAALQAFKVGNYDLVLSDIKMPEMSGIEL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + E DPD+ V+ TG+A ++ ++ + L KP L+ V R L ++ Sbjct: 69 LSKIREQDPDVPVILHTGYAELSSAVEAVKKEAFDYLLKPVEPEMLIKAVERGLQFRH 126 >gi|326204612|ref|ZP_08194468.1| response regulator receiver protein [Clostridium papyrosolvens DSM 2782] gi|325985179|gb|EGD46019.1| response regulator receiver protein [Clostridium papyrosolvens DSM 2782] Length = 120 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D MR + L K GYE+ + +NG A +K +E L++ DI MPEM Sbjct: 1 MGKSILIVDDAAFMRMMIKDILSKNGYEIAADVDNGLKAIEKYKELTPDLVIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ R ++ D K++ + A+ +S + KPF +V V +++ Sbjct: 61 DGVTAVREIKKIHSDAKIIMCSAMGQQAMVIESIQAGARDFIVKPFQADRVVEAVKKVI 119 >gi|322419614|ref|YP_004198837.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126001|gb|ADW13561.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1264 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 ++ IL+ EDD + R + L + GY+V+ +G A + + R + L L D++MP+M Sbjct: 1144 SETILVVEDDPAVGRLVESVLKRYGYQVILAGSGDEALELHESRWQEIRLALLDVIMPKM 1203 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G++L + P LKV+F++G+ A + ++ KP DL +V +L Sbjct: 1204 NGMQLYEALRQRSPLLKVLFLSGYTADVIQDKGIFMDGVDIMKKPAKPIDLARKVRDML 1262 >gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] Length = 1230 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D R L L + G+EV +NG A ++ PF ++L D+ MP++DG+ Sbjct: 904 RILVADDIAQNRELLKIILIRDGHEVTLVSNGEEALEQFASHPFDIVLMDVQMPKVDGLT 963 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R RA EL+ + I A L D A K A + +KP L +L E+ R+L Sbjct: 964 ATRRIRALELENNTLKTPIIALTASVLEEDRVAAKEAGMDGFSTKPIELANLTREMARVL 1023 Query: 119 TIKN 122 + + Sbjct: 1024 NVND 1027 >gi|212640548|ref|YP_002317068.1| sporulation regulator Spo0F (stand-alone reciever domain) [Anoxybacillus flavithermus WK1] gi|212562028|gb|ACJ35083.1| Sporulation regulator Spo0F (stand-alone reciever domain) [Anoxybacillus flavithermus WK1] Length = 129 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GYE NG A D + L+L D+ +P MD Sbjct: 11 MAGKILIVDDQFGIRILLNEVFKKEGYETYQAANGVQALDLFAKHSPHLVLLDMKIPGMD 70 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ ++ E++ ++KV+ +T + + + ++ +KPF + DL + + + + Sbjct: 71 GVEILKKMKEMNENVKVIVMTAYGELDMIHETKKLGALTHFAKPFDIDDLRDAIKKYI 128 >gi|197116452|ref|YP_002136879.1| sensor histidine kinase response receiver, PAS/GAF domain-containing protein [Geobacter bemidjiensis Bem] gi|197085812|gb|ACH37083.1| sensor histidine kinase response receiver, PAS and GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 1054 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 IL+ +D++ +R ++ L +G+ V++ A A + V E SL L+TD+VMPEM G Sbjct: 938 ILVVDDNESIREMALELLQASGHHVLTAETPALALELVGERAVSLDLLVTDVVMPEMSGP 997 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL R L P L V++I+G+ + + L KPF ++ +++ ++ Sbjct: 998 ELYERLALLQPGLPVLYISGYTFDVKVHNPRQHQQVSFLPKPFTSEKFLSVIDKAIS 1054 >gi|323697515|ref|ZP_08109427.1| ATP-binding region ATPase domain protein [Desulfovibrio sp. ND132] gi|323457447|gb|EGB13312.1| ATP-binding region ATPase domain protein [Desulfovibrio desulfuricans ND132] Length = 628 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDG 61 ++LL +DD + + + L AGYEV + ++G + + F L++TD MP M G Sbjct: 511 RLLLVDDDAGALQAMQRVLRDAGYEVFTASSGQEGLKEFFRGKGRFDLVVTDQSMPGMTG 570 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +E+A R E PD KV+ TG L + A + KP R LV VN+ Sbjct: 571 MEMAARVLEHAPDAKVVICTGHVEARLEAQARLTGVAGFVMKPMSPRTLVENVNKF 626 >gi|255322728|ref|ZP_05363872.1| two component transcriptional regulator, winged helix family [Campylobacter showae RM3277] gi|255300289|gb|EET79562.1| two component transcriptional regulator, winged helix family [Campylobacter showae RM3277] Length = 242 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 61/111 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD+ +R + ++ EV +C N A + + +L+L+DI MP M+G+E+ Sbjct: 14 LLIVEDDESLRESIKISVESYVSEVYACANAKEALEVFEAKDVNLVLSDINMPHMNGLEM 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 A R LD D+ ++F+T + + + VL KPF RDL+ +++ Sbjct: 74 AARIRGLDKDVPIIFLTAYGNDENVLSAIELGSFGVLKKPFEKRDLIMQMS 124 >gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803] gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803] Length = 242 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRIRE-KHSLPIMFLSA 92 >gi|119477938|ref|ZP_01618038.1| two-component response regulator [marine gamma proteobacterium HTCC2143] gi|119448851|gb|EAW30093.1| two-component response regulator [marine gamma proteobacterium HTCC2143] Length = 473 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R L+ L AG EVV + +A + ++++DI M MDG+ L Sbjct: 12 ILVVEDDLDLREALVDTLEIAGCEVVQADCAEAALKIMPNYALDMVVSDINMGAMDGLGL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + L P L V+ +T +A+++ + ++ L KPF + LV ++R +T N Sbjct: 72 LKEIRTLYPQLPVLLVTAYASISASVEAIRNGAVDYLVKPFKPQLLVETISRYVTSAN 129 >gi|116749808|ref|YP_846495.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698872|gb|ABK18060.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 1509 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 +++IL +D+ + L GY V + ++ A+D K R + F L++TD+ MP + Sbjct: 1386 SERILFVDDERVLVELARTMLTALGYTVTATSDSIKAFDIFKNRADEFDLIITDLTMPRL 1445 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELAR A + P++ V+ TG+ + + + + KP + +++ + R+L Sbjct: 1446 TGVELARAALSVRPEIPVILCTGYTEMITEEEVKQAGIRQFVMKPLNTKNVARLIRRVL 1504 >gi|300725849|ref|ZP_07059315.1| putative two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299776896|gb|EFI73440.1| putative two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1355 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ ED+ ++ + + K LG Y +++ NG+ A++ +++E L+++DI+MP MDG Sbjct: 1102 NYTILIVEDNLELLQLMQKILGNL-YHIITAKNGSQAWNIIQKESLDLVISDIMMPIMDG 1160 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 +EL R + + D +++ + A D N A ++KPF + +L + LL Sbjct: 1161 LELT-RLIKTNHDYQLIPVVLLTAKTTTEDKNKGLEAGADDFMNKPFSMEELKMRIANLL 1219 >gi|269139358|ref|YP_003296059.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda EIB202] gi|267985019|gb|ACY84848.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda EIB202] gi|304559263|gb|ADM41927.1| Acetoacetate metabolism regulatory protein AtoC [Edwardsiella tarda FL6-60] Length = 461 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L AL G+E + ++GA A + + P ++L DI MP M+GI+ Sbjct: 6 RILIVDDEDNVRRMLTTALTLQGHETHAASHGAEALQRFADAPPDVVLMDIRMPTMNGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P V+ +T +A V ++ + KPF L +L + R L ++ Sbjct: 66 ALKVMRARQPRTPVILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123 >gi|228994055|ref|ZP_04153956.1| Sporulation initiation phosphotransferase F [Bacillus pseudomycoides DSM 12442] gi|229000124|ref|ZP_04159694.1| Sporulation initiation phosphotransferase F [Bacillus mycoides Rock3-17] gi|229007645|ref|ZP_04165238.1| Sporulation initiation phosphotransferase F [Bacillus mycoides Rock1-4] gi|229087829|ref|ZP_04219943.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock3-44] gi|228695465|gb|EEL48336.1| Sporulation initiation phosphotransferase F [Bacillus cereus Rock3-44] gi|228753596|gb|EEM03041.1| Sporulation initiation phosphotransferase F [Bacillus mycoides Rock1-4] gi|228759661|gb|EEM08637.1| Sporulation initiation phosphotransferase F [Bacillus mycoides Rock3-17] gi|228765703|gb|EEM14356.1| Sporulation initiation phosphotransferase F [Bacillus pseudomycoides DSM 12442] Length = 122 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 63/121 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVILDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E++ D+KV+ +T + + + ++ +KPF + ++ V + + Sbjct: 61 GIEILKHVKEINEDIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNEIAV 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|121533922|ref|ZP_01665748.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermosinus carboxydivorans Nor1] gi|121307433|gb|EAX48349.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermosinus carboxydivorans Nor1] Length = 476 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 13/130 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N ++L+ +D+ +RR L + +AGYE NG A ++ +E ++++ DI MP MD Sbjct: 17 INNRVLIVDDELSVRRLLFEVARRAGYEAFLAENGQEAIEQTKEIKPAVIIMDIKMPVMD 76 Query: 61 GIELARRATELDPDLKVMFITGFAAV-------------ALNPDSNAPKNAKVLSKPFHL 107 G+E R PD+ V+ +T V L SN + VL + F + Sbjct: 77 GLEAFERIRADYPDVAVILMTAHGTVDTAVEAMKRGAFDYLVKPSNVTEVRIVLERAFQM 136 Query: 108 RDLVNEVNRL 117 R L EV L Sbjct: 137 RRLREEVAAL 146 >gi|330967657|gb|EGH67917.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 676 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRALVSEVLNELGYAFIEAGQATDAVPILESAQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPELKVLFITGYAEHAAVRAGFLDTGMELITKPFAFDHLTSKVREMI 674 >gi|317011744|gb|ADU85491.1| putative transcriptional regulator [Helicobacter pylori SouthAfrica7] Length = 213 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 13/125 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVACAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNE 113 +EL +R + V+FIT D+ KNA L KPF L +L Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQ------DNTTLKNAFNLGASDYLKKPFDLDELEAR 114 Query: 114 VNRLL 118 + R Sbjct: 115 IKRFF 119 >gi|331243018|ref|XP_003334153.1| transcriptional activator protein copR [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313143|gb|EFP89734.1| transcriptional activator protein copR [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 2152 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ DMR FL L + Y VV +G AY + +L++D++MP MDG EL Sbjct: 1379 VLIADDNSDMRAFLKSVLSRY-YNVVEAVDGQQAYQLAKLNRPDILVSDVMMPGMDGFEL 1437 Query: 65 ARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR + D D + V+ ++ A + A L KPF ++LV VN L I Sbjct: 1438 LRR-LKADSDTAGMSVILLSARAGSESRIEGLAEGADDYLVKPFEAKELVARVNTHLQI 1495 >gi|255693586|ref|ZP_05417261.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260620652|gb|EEX43523.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1327 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ +M +FL++ L ++ Y+V++ NG A ++E +L+++D++MPEMDG+EL Sbjct: 1082 LLVVEDNAEMNKFLVRQLSES-YKVLTAANGVEALKILQESIINLIISDVMMPEMDGLEL 1140 Query: 65 ARRA-TELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 TELD + ++ +T + D + KPF + L ++ LL Sbjct: 1141 CDTVKTELDYSHIPIILLTAKTTLQSRIDGLKAGADAYIEKPFSMEYLKVSISSLL 1196 >gi|224368614|ref|YP_002602777.1| two component protein (response regulator/sensory box histidine kinase) [Desulfobacterium autotrophicum HRM2] gi|223691330|gb|ACN14613.1| two component protein (response regulator/sensory box histidine kinase) [Desulfobacterium autotrophicum HRM2] Length = 995 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + I+ +D++ +R L GY V + ++G A++ E+P F L++TD+ MP M Sbjct: 869 ETIMFVDDEEALREVTHDILKGFGYTVHTLSSGPKAFETYNEDPCRFDLVVTDMTMPGMT 928 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL++R EL P+ ++ TG++ + + + + KP +++L + ++L Sbjct: 929 GLELSQRILELRPEQPIVLCTGYSETIDREKALSIGITEYVEKPMIIKELAKVIRKVL 986 >gi|215433459|gb|ACJ66695.1| response regulator [Myxococcus fulvus HW-1] Length = 205 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-------REEPFSLLLTDIVM 56 +ILL ED +MR L +AL + GY+VV +G + + + L++TD+ M Sbjct: 80 RILLGEDQPEMRSLLRRALTRRGYDVVEAPDGPGLVKALVDGLLAQQTQVPDLIVTDVRM 139 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P GIE+ R V+ IT F L+ ++ A+VL+KPF + DL V Sbjct: 140 PGFSGIEVLARLRREGWTTPVILITAFGDAQLHQEAELLGAARVLNKPFAMEDLCEAVET 199 Query: 117 LL 118 L+ Sbjct: 200 LV 201 >gi|163750521|ref|ZP_02157759.1| response regulator [Shewanella benthica KT99] gi|161329676|gb|EDQ00665.1| response regulator [Shewanella benthica KT99] Length = 367 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD RR + L G +V+ N+G DK ++ F ++L D+ MP M G+++ Sbjct: 8 ILLVEDDPVFRRIVAAFLDSRGAKVIEANDGEQGLDKFKQYAFDIVLADLSMPIMGGLDM 67 Query: 65 ARRATELDPDLKVMFITG 82 ++ +EL+PD + I+G Sbjct: 68 LKKMSELNPDTPAIVISG 85 >gi|111220245|ref|YP_711039.1| putative two-component hybrid sensor and regulator [Frankia alni ACN14a] gi|111147777|emb|CAJ59437.1| putative Two-component hybrid sensor and regulator [Frankia alni ACN14a] Length = 680 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ ED+ MR + L + GY+V++ +G A + P LLLTD+VMP++ Sbjct: 557 ETILVVEDERAMREVTRRLLARNGYQVITAADGHRAVELAVSHPAEIHLLLTDVVMPQVL 616 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +A P ++V+F++G+A L + +L KPF + L+ +V +L Sbjct: 617 GRTVATLVRRHRPGIRVLFMSGYAYPVLAHNGTLDPGLTLLGKPFSEQMLLAKVRDVL 674 >gi|86742857|ref|YP_483257.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3] gi|86569719|gb|ABD13528.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3] Length = 657 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +LL ED + + L + GY+V++ + A + P LLLTD++MP + Sbjct: 536 ETVLLVEDQPAILEVTRRLLARNGYQVLTATSADEALPLAADHPGPIHLLLTDVIMPRLQ 595 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA R P+++V++++G+A L +L KPF R L+ +V L Sbjct: 596 GKELASRIRSTRPEIRVLYMSGYAHPVLATQGKLDPGVILLEKPFSERVLLAKVRDAL 653 >gi|39995917|ref|NP_951868.1| nitrogen regulation protein NtrX [Geobacter sulfurreducens PCA] gi|39982681|gb|AAR34141.1| nitrogen regulation protein NtrX [Geobacter sulfurreducens PCA] gi|298504931|gb|ADI83654.1| sigma-54-dependent transcriptional response regulator AtoC [Geobacter sulfurreducens KN400] Length = 456 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ IL+ +D+ D+R L L GY +G A + V+++ L+L DI MP +D Sbjct: 1 MNETILVVDDEQDIRTALAGILEDEGYRTAFARDGVEALETVQKDRPDLVLLDIWMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E +R DP L V+ ++G + S + KP L + L+T+ Sbjct: 61 GMETLQRLKTADPGLTVVMMSGHGTIETAVKSTKMGAFDFIEKPLSLEKI------LVTV 114 Query: 121 KN 122 +N Sbjct: 115 RN 116 >gi|330869968|gb|EGH04677.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 676 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLENGMQLITKPFAFDHLTSKVREMI 674 >gi|298487171|ref|ZP_07005220.1| Sensory box sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158195|gb|EFH99266.1| Sensory box sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 676 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLENGMQLITKPFAFDHLTSKVREMI 674 >gi|266622770|ref|ZP_06115705.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288865493|gb|EFC97791.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 1052 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + LLAED++ R ++ LG G + + NG A + +E P +SL+L DI MP M Sbjct: 929 KTFLLAEDNELNREIALELLGNMGAGMETAVNGEEAVKRFKESPPNYYSLILMDIQMPVM 988 Query: 60 DGIELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 +G E AR +D PD K + I A A D K A + ++KP L E+N Sbjct: 989 NGYEAARAIRLMDRPDAKAVPIIAMTADAFVEDIQNAKAAGMNGHMAKPLDYEGLSQEIN 1048 Query: 116 RLL 118 + L Sbjct: 1049 KYL 1051 >gi|260893850|ref|YP_003239947.1| response regulator receiver protein [Ammonifex degensii KC4] gi|260865991|gb|ACX53097.1| response regulator receiver protein [Ammonifex degensii KC4] Length = 123 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR + L K GYEVV NG A + ++ ++ DI MPEM Sbjct: 1 MGKRVLIVDDAAFMRMMIKNILTKHGYEVVGEAANGKEAVELYKQLKPDVVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGIE + +DP+ K++ I+ A+ ++ + KPF ++ + R+L Sbjct: 61 DGIEGVKAIRAIDPNAKIIMISAMGQQAMVMEAIQAGAKDFIVKPFQQERVLQALERVLA 120 >gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621] gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621] Length = 242 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRIRE-KHSLPIMFLSA 92 >gi|197103245|ref|YP_002128623.1| histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196480521|gb|ACG80048.1| histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 685 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 10/118 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +L+ +DD+ +R + LG+ GY V+ +G +A + + LL+ D MP M+G+E Sbjct: 566 VLVVDDDELVRETTSQMLGQLGYRVLQAGSGGAALELLSGRRKIDLLIVDFAMPGMNGVE 625 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 LA+ A P L ++ TGFA D +A ++ ++L+KPF +L V R L Sbjct: 626 LAKLAAAKRPRLPILMATGFA------DHSAIQHLAADQLLTKPFSEAELAQRVRRAL 677 >gi|241204540|ref|YP_002975636.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858430|gb|ACS56097.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 483 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWISAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + PDL V+ ++ ++ L KPF L +L+ + R L+ Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALS 119 >gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 224 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + L + L G+ V + +G A RE+P L++ DI+MP MDG+E Sbjct: 3 RILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMPGMDGME 62 Query: 64 LARRATELDPDLKVMFIT 81 + RR DP+L V+F+T Sbjct: 63 VLRRLRAADPELPVLFLT 80 >gi|296134555|ref|YP_003641797.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thiomonas intermedia K12] gi|295794677|gb|ADG29467.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thiomonas intermedia K12] Length = 456 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 59/121 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL +DD D+R+ L L AGY V+ +GA A + S ++TD+ M MD Sbjct: 1 MPATVLLVDDDPDLRQLLAIRLRSAGYAPVTAASGAEALGSLAASRPSAVITDLRMEGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L DP L V+ +T + D+ L+KPF R+L+ + R + + Sbjct: 61 GLSLFEHIRAQDPSLPVIILTAHGTIPDAVDATQRGVFGFLTKPFEARELLALLERAIAL 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|218459427|ref|ZP_03499518.1| putative two-component sensor histidine kinase protein [Rhizobium etli Kim 5] Length = 209 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KILL +DD + ++ L G+EVV N+G+ A + +R F +++TD MP M G Sbjct: 86 KILLVDDDTLIAMSSVEMLEDLGHEVVEANSGSQALELIRTGGHFDVMITDYSMPGMTGA 145 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA+ + P L ++ TG+A + + + P+ L KP++ L E+++ + Sbjct: 146 QLAQAVRTIRPTLPIVLATGYADLPAGAEVDLPR----LGKPYNQDQLAREIHKAM 197 >gi|146338882|ref|YP_001203930.1| chemotaxis protein CheY [Bradyrhizobium sp. ORS278] gi|146191688|emb|CAL75693.1| Chemotaxis protein cheY [Bradyrhizobium sp. ORS278] Length = 121 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL +D MR + L KAG++V +G +A + + F L++TD+ MP MD Sbjct: 1 MTKRILAVDDSKTMRDMVSFTLKKAGFDVAEAEDGKAALNVLGGGRFDLIITDLNMPNMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L + RA + ++ +T + A D A L KPF+ L+ VNR+ Sbjct: 61 GITLIKNVRAGSQHRAVPILILTTESDGAKKADGKAAGATGWLVKPFNPEQLIATVNRV 119 >gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1] gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1] Length = 222 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+ILL ED+ D+ R + L +AGY V++ +G + RE L++ D+ +P+ D Sbjct: 1 MEQRILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G E+ARR + + ++ +T A+ + ++KPFH +LV V Sbjct: 61 GAEVARRLRKTS-SVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARV 113 >gi|284035683|ref|YP_003385613.1| Fis family transcriptional regulator [Spirosoma linguale DSM 74] gi|283814976|gb|ADB36814.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirosoma linguale DSM 74] Length = 490 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 57/104 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++D+ L + L K GY+ S G +R+E F L++ D +P++DG+ Sbjct: 2 EKILIIDDNNDICLLLERFLTKQGYKTASVQRGDDGLVLLRKESFELVICDFKLPDIDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 E+ RR + P V+ ITG++ V + + ++KP + Sbjct: 62 EMLRRIKVMHPTTAVIIITGYSDVRVAVQTVKHGAYDYVTKPLY 105 >gi|153853122|ref|ZP_01994531.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814] gi|149753908|gb|EDM63839.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814] Length = 227 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 62/114 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MDG+E Sbjct: 4 RLLIVEDEKQICDAVAKSLYDAGYEVDTCYDGEEALEYILTENYDLIVLDLNLPGMDGME 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + + + + KV+ ++ +A + + KPFHL++L + L Sbjct: 64 ILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 117 >gi|78221776|ref|YP_383523.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193031|gb|ABB30798.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 457 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 13/127 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L + L K GYEVVS NG A VR+E L+L DI +P + G++ Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYEVVSAGNGEDALRLVRDEQPDLVLLDIQLPGISGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVA-------------LNPDSNAPKNAKVLSKPFHLRDL 110 + + E D ++ V+ +T A+ +N N + A V+ K DL Sbjct: 65 VLEKIKEHDEEIIVIMVTAHGALETAVHAMRLGAFDYINKPFNLDEMAIVIRKALETSDL 124 Query: 111 VNEVNRL 117 EV RL Sbjct: 125 RREVQRL 131 >gi|320354948|ref|YP_004196287.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320123450|gb|ADW18996.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 127 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 60/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L +D+DD R ++K L + + +G A + +++ F +++ D+ MP MDGIE Sbjct: 5 RVLFVDDEDDFRETIVKRLNARKIQAMGAESGFKALEILKDHDFDVMVLDVKMPGMDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R ++ P+++V+ +TG A+V + KP L +L++ + + Sbjct: 65 TLRHVKKMKPEIEVIMLTGHASVEFGLKGMQLGAFDYVMKPAPLNELLDTIGQ 117 >gi|189425499|ref|YP_001952676.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] gi|189421758|gb|ACD96156.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] Length = 316 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 39/76 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD MR L + L AGY V NG A + R F ++LTD VMPEMDGI Sbjct: 8 ILLVDDDRFMRTVLCQTLQDAGYRVSQAANGKEALELCRSTYFPIILTDWVMPEMDGIAF 67 Query: 65 ARRATELDPDLKVMFI 80 R EL + I Sbjct: 68 CRAFRELAAECYTYLI 83 >gi|332533129|ref|ZP_08408998.1| flagellar regulatory protein FleQ [Pseudoalteromonas haloplanktis ANT/505] gi|332037411|gb|EGI73865.1| flagellar regulatory protein FleQ [Pseudoalteromonas haloplanktis ANT/505] Length = 488 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ EDD +R LI L +G E V+ ++ A ++++ FSL+++D+ M M Sbjct: 1 MSNTILVVEDDAGLREALIDTLEMSGIECVAASSAEQAMLLLKKDQFSLVVSDVQMGAMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R PDL V+ +T +A + ++ ++KPF L+N V+R L Sbjct: 61 GLDLLRSIKLNHPDLPVLMMTAYATIDDAVEAMRLGAIDYMAKPFAPEVLLNMVSRYL 118 >gi|288959997|ref|YP_003450337.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912305|dbj|BAI73793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1522 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ +L+ EDD+++R ++ L Y V+ + SA + P LL TD+VMP + Sbjct: 1264 SETVLVVEDDEEVRHTVVAMLTDLDYRVLQARDAQSALAILESGVPIDLLFTDVVMPGPL 1323 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +LAR+A E P+L V+F +G+ A+ ++LSKP+ L ++ ++L+ Sbjct: 1324 RSPDLARKAQERFPNLAVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREILARKIRQVLS 1383 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 10/124 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG- 61 + +LLA+D+ DMR ++ + L AGY VV+ +G SA VR L+L+D++MP +DG Sbjct: 741 ETVLLADDNADMRGYVERLLAGAGYRVVAVEDGRSAVTAVRAIRPDLVLSDVMMPHLDGF 800 Query: 62 --IELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 I+ RR +PD L ++ ++ A D ++KPF R+L+ V Sbjct: 801 GVIDALRR----NPDTRELPIILLSARAGEESAIDGFQAGADDYVAKPFSARELIARVEG 856 Query: 117 LLTI 120 L + Sbjct: 857 TLRL 860 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 ILL EDD +R + + + G+ V+ + A E LL TD+ +P+ G + Sbjct: 1406 ILLVEDDALIRMAVADMVAELGHRVLEAGSVREALHIAGSEHAIDLLFTDLTLPDGRGED 1465 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 LA P L V+F +G + PD A K HLR Sbjct: 1466 LAAELVRRMPGLPVVFASG----RMGPDE--LDAASFGGKTVHLR 1504 >gi|298208224|ref|YP_003716403.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Croceibacter atlanticus HTCC2559] gi|83848145|gb|EAP86015.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Croceibacter atlanticus HTCC2559] Length = 388 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K L + YEV +G S + +++ F L+L DI MP+MDG Sbjct: 3 KILIIEDEAAIRRVLTKILSEENDTYEVQEAEDGLSGIELIKDNDFDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +E+ A ++ P+ ++ I+G + ++ +SKP L L+N V Sbjct: 63 VEVLEAAKKIKPETPIVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTV 115 >gi|310822390|ref|YP_003954748.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|309395462|gb|ADO72921.1| Response regulator [Stigmatella aurantiaca DW4/3-1] Length = 127 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 11/118 (9%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66 + +DD D+ L + L G+E+ NG A D++ +P L+L D++MP MDG E A+ Sbjct: 1 MVDDDPDILEALSEILEAEGFEIRRARNGKEALDRLEPDPPQLILLDLMMPVMDGWEFAQ 60 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVNRLL 118 R + P I+ + L+ D N A L+KPF L DL++ V R L Sbjct: 61 RMRQRPP-----AISSIPLIVLSADRNVGSKAVDIGAVGHLAKPFELNDLLDMVRRAL 113 >gi|153933506|ref|YP_001382698.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935658|ref|YP_001386249.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152929550|gb|ABS35050.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931572|gb|ABS37071.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 225 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +K+++ P + + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIEKIKDVP-DIWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKSTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|149369819|ref|ZP_01889670.1| response regulatory protein, sigma 54 related [unidentified eubacterium SCB49] gi|149356310|gb|EDM44866.1| response regulatory protein, sigma 54 related [unidentified eubacterium SCB49] Length = 387 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L+K L + + Y+V +G + +++E + L+L DI MP+MDG Sbjct: 3 KILIIEDEASIRRVLVKILSEENSSYKVTEAEDGLVGIELIKKEDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 IE+ ++ P++ ++ I+G + ++ +SKP L L+N V Sbjct: 63 IEVLEAVKKIKPEIPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTV 115 >gi|308274302|emb|CBX30901.1| hypothetical protein N47_E44130 [uncultured Desulfobacterium sp.] Length = 471 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ ILL +D++ +RR + L K G+ V NG A + RE L++ D+ MP M Sbjct: 346 NETILLVDDEEPLRRLGYELLNKQGFTVFVAENGEEALEIYRENKKIIDLVILDVSMPGM 405 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G + +++P++KV+ +TG++ + A + KP+ ++N++ +L Sbjct: 406 GGYLCFKELRKMNPNIKVIIVTGYSDNGKVKEIIKSGAAGFVGKPYRFTKILNKIQEILD 465 Query: 120 IK 121 K Sbjct: 466 TK 467 >gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4] gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4] Length = 232 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG + + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|158520444|ref|YP_001528314.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158509270|gb|ABW66237.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 458 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 51/82 (62%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD + + L + GY+V + ++G A D V+E PF+L+L D+ M +M GIE Sbjct: 9 ILIVDDDLNHLKTLQTIVRSWGYQVSTADDGVKAVDTVKERPFALILMDVRMAQMSGIEA 68 Query: 65 ARRATELDPDLKVMFITGFAAV 86 ++ + +P + ++ +T +++V Sbjct: 69 LKQIKQYNPAIPILIMTAYSSV 90 >gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ EDD + R L LG GY V S ++G + R E L++ D+++P M Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMG 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ R + DP+L ++ ++ A + L D L KPF L++L+ Sbjct: 61 GLEVIREIRKEDPELPILILSAKNQETDKVAGLQLGADD-------YLGKPFGLKELLAR 113 Query: 114 VNRLL 118 ++ LL Sbjct: 114 IDALL 118 >gi|330830288|ref|YP_004393240.1| Fis family two component sigma54 specific transcriptional regulator [Aeromonas veronii B565] gi|328805424|gb|AEB50623.1| Two component, sigma54 specific, transcriptional regulator, Fis family [Aeromonas veronii B565] Length = 447 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 59/113 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ +R L+ L GYE ++G A + +PF ++++DI M MDG+ Sbjct: 5 RILVVEDDNGLREALVDTLLLGGYECREADSGERALLALSRQPFDMVISDIQMGGMDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + P + V+ +T +A + + L+KPF L+N+V+R Sbjct: 65 LLATIRQQYPQIPVLLMTAYANIDGAVRAMREGAIDYLAKPFSPEVLLNQVSR 117 >gi|220915445|ref|YP_002490749.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953299|gb|ACL63683.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 465 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D ++MR+ L K L GY V +GA A V P+ +++TDI MP DG E Sbjct: 7 RVLVADDKENMRKLLAKILAD-GYAVEEAEDGARALSLVATRPYDVVVTDIRMPGADGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 L PD +V+ +TG+A +A Sbjct: 66 LLGAVKARAPDTEVVMMTGYATIA 89 >gi|197120733|ref|YP_002132684.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196170582|gb|ACG71555.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 465 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D ++MR+ L K L GY V +GA A V P+ +++TDI MP DG E Sbjct: 7 RVLVADDKENMRKLLAKILAD-GYAVEEAEDGARALSLVATRPYDVVVTDIRMPGADGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 L PD +V+ +TG+A +A Sbjct: 66 LLGAVKARAPDTEVVMMTGYATIA 89 >gi|126657525|ref|ZP_01728681.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126621229|gb|EAZ91942.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 118 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 53/112 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + +F+ K L K G+ + NG A + E F L+L D+ +P MDG Sbjct: 3 RILIVEDEPRLAQFIEKGLNKQGFITLVATNGKDALSLTQTEQFDLILLDLGLPIMDGWT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + VM +T + + K +SKPF +DLV +N Sbjct: 63 FLQHLKNEGNQIPVMIMTALDQREVKNKGESYNIKKYISKPFRFQDLVENIN 114 >gi|311745310|ref|ZP_07719095.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] gi|126577843|gb|EAZ82063.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] Length = 230 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD ++ L + L GYE C +G ++K +++ + L L DI+MP+ DG Sbjct: 5 KLLVVEDDPNLGDILQEYLEMKGYEPTLCRDGEEGWNKFKKDKYDLCLLDIMMPKKDGFT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ ++ +L ++F+T A N + + K+ ++KPF + +L+ V +L Sbjct: 65 LAKEIKKVQDNLPILFLT-----AKNQKDDIIEGLKIGADDYITKPFSMEELLLRVTAIL 119 >gi|262165366|ref|ZP_06033103.1| response regulator [Vibrio mimicus VM223] gi|262025082|gb|EEY43750.1| response regulator [Vibrio mimicus VM223] Length = 447 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++D+ + L + L + Y VV+ +NGA A +++ P ++++D+ MPEMDG + Sbjct: 13 ILLLDDENDILKALNRVL-RMDYNVVTFDNGADALQHLQDNPVHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ P + +TG+A + + NA +SKP+ Sbjct: 72 LAKAREMQPQTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|258626310|ref|ZP_05721157.1| hypothetical protein VMB_24580 [Vibrio mimicus VM603] gi|258581362|gb|EEW06264.1| hypothetical protein VMB_24580 [Vibrio mimicus VM603] Length = 445 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++D+ + L + L + Y VV+ +NGA A +++ P ++++D+ MPEMDG + Sbjct: 11 ILLLDDENDILKALNRVL-RMDYNVVTFDNGADALQHLQDNPVHIIISDMRMPEMDGADF 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ P + +TG+A + + NA +SKP+ Sbjct: 70 LAKAREMQPQTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 111 >gi|258593328|emb|CBE69667.1| putative response regulator in two-component regulatory system (CheY-like protein) [NC10 bacterium 'Dutch sediment'] Length = 123 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL ED+ R+ + L K YE++ +NG +A D + L+L DI +P++ G+E+ Sbjct: 6 ILHVEDNQYNRKIIRDLLSKHNYEIMEAHNGEAALDALARRRPDLILMDIQLPKLSGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR DP L + I + AL+ D A ++KPF RDL+ + R L Sbjct: 66 TRR-IRADPSLAQIPIIAITSFALSGDERTAFEAGCSAYIAKPFRPRDLLEMIQRFL 121 >gi|288962451|ref|YP_003452746.1| two component, response regulator [Azospirillum sp. B510] gi|288914717|dbj|BAI76202.1| two component, response regulator [Azospirillum sp. B510] Length = 122 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D +++R L +L AGY V +G A ++ + F L++ D+ MP ++GI+ Sbjct: 2 KILIVDDAENVRYSLRTSLEDAGYTVEEAVDGEEALTRLDSDAFDLVIADVWMPRLNGID 61 Query: 64 LARRATELDPDLKVMFITGFAA-VALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 L ++ + P+ V+ ITG AA + + + + KV KPF +L+ + RL Sbjct: 62 LLQKMRAISPNTPVLIITGGAARIPIESTAAMARTWGADKVFYKPFDNSELIKFIQRL 119 >gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 247 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG + + + L + DI+MP+MDGIEL Sbjct: 21 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 80 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 81 CRRIRE-KHSLPIMFLSA 97 >gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 232 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GYEV++ N+G A + VR E LL+ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ D A +A L KPF L +L+ V L+ Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVS---DRVAGLDAGADDYLPKPFALEELLARVRSLV 116 >gi|167044200|gb|ABZ08881.1| putative Response regulator receiver domain protein [uncultured marine microorganism HF4000_APKG5H11] Length = 242 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KI++ +DD D+R L + L G EV++ +G A + E L+ DI MP MD Sbjct: 1 MTHKIMVVDDDTDLRITLQEILIGKGREVLAAKDGFQAIELASEGNIDLIFMDIRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E + E+ P+ V+ +TG+A +L + + L+KP + +++ V+ + Sbjct: 61 GVETFLKIKEILPNCTVVMMTGYAVESLIERALSEGAKACLNKPVSIDEILEIVDAFM 118 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 52/102 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +I++ +DD D+R L + L G EV++ +G A + + L+ DI MP MDG+ Sbjct: 125 HRIMVVDDDADLRTTLQEILIDKGREVLAAEDGFQAIEFASDGNIDLIFMDIRMPGMDGV 184 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 E + ++ PD V+ +TG AA L + + L KP Sbjct: 185 EAFLKIKQILPDCIVVMMTGNAAEPLIEQALSEGAKTCLGKP 226 >gi|325955255|ref|YP_004238915.1| two component, sigma54 specific, transcriptional regulator [Weeksella virosa DSM 16922] gi|323437873|gb|ADX68337.1| putative two component, sigma54 specific, transcriptional regulator [Weeksella virosa DSM 16922] Length = 394 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +R L L + +EV NG A +K+ E + L+++DI MP+ DG Sbjct: 3 KILIIEDEKAIRNVLKNILLDEDSSFEVDEAENGEIALEKINEVEYDLIISDIKMPKKDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E+ A E PDL + I+G + D +SKP L L+N V L K Sbjct: 63 VEVLTEALEQHPDLTFVMISGHGDIETAVDCIKKGAYDYISKPPDLNRLLNTVRNALNHK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|326315103|ref|YP_004232775.1| two component sigma54 specific transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371939|gb|ADX44208.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 462 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 39/114 (34%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L EDD +RR +AL A V + G +A D ++P ++++TDI MP +DG+EL Sbjct: 17 VYLIEDDAMVRRAYGQALELAHIPVRAFPQGQAALDAFGQDPPAVVVTDIRMPGLDGMEL 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + D DL V+ +TG VA+ ++ + KPF L+ V R L Sbjct: 77 LRLLRQRDADLPVVLVTGHGDVAMAVEAMRDGAYDFIEKPFSSERLLLTVRRAL 130 >gi|289646786|ref|ZP_06478129.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 676 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLENGMQLITKPFAFDHLTSKVREMI 674 >gi|289628474|ref|ZP_06461428.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 676 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P+LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPELKVLFITGYAEHAAVRGGFLENGMQLITKPFAFDHLTSKVREMI 674 >gi|255261921|ref|ZP_05341263.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domain [Thalassiobium sp. R2A62] gi|255104256|gb|EET46930.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domain [Thalassiobium sp. R2A62] Length = 777 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDG 61 +IL+AED +D+ +++ L G++V +G A + E +P LL+TDIVMP ++ G Sbjct: 638 RILVAEDQEDVLNIIVRTLEAEGHDVTKATSGDDAARRFFELKPIDLLITDIVMPGDLQG 697 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 LAR D DL V+F++G+ A+ + + L KP L+ VN L K Sbjct: 698 PSLARHLRSFDMDLPVIFLSGYTNDAVLKGNGLKEEDVHLMKPVAREQLLKAVNGALGTK 757 >gi|77747834|ref|NP_637022.2| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761230|ref|YP_243649.2| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] Length = 955 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDI-VMPEM 59 ++ +LL ED+ +R + + L AGY V+ +G++A ++++ E LL+TD+ + + Sbjct: 829 SKTVLLVEDEAPIRILICEVLIDAGYRVIDVADGSTAVERLQSAEVIDLLVTDVGLTGAL 888 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A P L V+F+TG+AA A +VL+KPF DL V +LL Sbjct: 889 NGRQVADAGRLQRPALPVLFVTGYAASAAVGAGQLETGMEVLTKPFLAADLERRVGQLL 947 >gi|116751156|ref|YP_847843.1| response regulator receiver modulated metal dependent phosphohydrolase [Syntrophobacter fumaroxidans MPOB] gi|116700220|gb|ABK19408.1| response regulator receiver modulated metal dependent phosphohydrolase [Syntrophobacter fumaroxidans MPOB] Length = 384 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 1/113 (0%) Query: 6 LLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DD+D R LIK +G + G + + A + +R F L+L+DI M MDG+ L Sbjct: 71 LLVVDDEDSYRTLIKNMGERFGIACEAAADAGEAMEMLRRNAFDLVLSDIRMRGMDGLTL 130 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RRA + P L + +TGF + A A ++KPF + +L +++R+ Sbjct: 131 MRRAQKEFPQLDFVIMTGFVPDYSYSEIIAAGAADFIAKPFQVGELEAKLDRI 183 >gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] Length = 1227 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL A+D+ D+R +++ L A YEVV+ +G A E PF L+LTD++MP +DG Sbjct: 625 RILFADDNSDLREHVVRLLSPA-YEVVAVPDGVEALRLAVETPFDLVLTDVMMPRLDGFG 683 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + ++ ++ A A + L+KPF ++LV V Sbjct: 684 LVAALRAEPATRHVPIVLLSARAGAAEEVAGLSTGADDYLTKPFSSQELVARV 736 >gi|261210750|ref|ZP_05925042.1| response regulator [Vibrio sp. RC341] gi|260840235|gb|EEX66815.1| response regulator [Vibrio sp. RC341] Length = 447 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++D+ + L + L + Y VV+ +NGA A + ++E P ++++D+ MPEMDG + Sbjct: 13 VLLLDDENDILKALNRVL-RMDYNVVTFDNGAEALEYLQENPIHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 + E+ P + +TG+A + + NA +SKP+ Sbjct: 72 LAKVREMQPQTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|268317350|ref|YP_003291069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodothermus marinus DSM 4252] gi|262334884|gb|ACY48681.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodothermus marinus DSM 4252] Length = 461 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ +RR L + L GY V +G A +K+RE + L+L DI MP D Sbjct: 1 MAATILVVDDERSIRRTLREILEYEGYAVEEAADGDEALEKLREGRYDLVLLDIKMPRRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R P+L V+ I+G + ++ + KP L L LLT+ Sbjct: 61 GMEVLRTLAAEQPELPVVMISGHGTIETAVEATRLGAFDFIEKPPDLNRL------LLTV 114 Query: 121 KN 122 +N Sbjct: 115 RN 116 >gi|189464563|ref|ZP_03013348.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM 17393] gi|189438353|gb|EDV07338.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM 17393] Length = 1370 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 71/125 (56%), Gaps = 7/125 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D++++RR++ + L Y + CNNG A++++ ++ L++D++MPEMDG+ Sbjct: 1103 RILIADDNEEIRRYIRQEL-TPDYHITECNNGQEAFEQIIKDAPDALISDVMMPEMDGMT 1161 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL----RDLVNEVNRL 117 L R+ + L + V+ +T N ++ ++KPF++ + + N + R Sbjct: 1162 LCRKIRQNILVSHIPVILLTAKINEESNLEALEGGVDAYITKPFNIDVLKKTIRNVIYRH 1221 Query: 118 LTIKN 122 IKN Sbjct: 1222 ELIKN 1226 >gi|16264613|ref|NP_437405.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|15140751|emb|CAC49265.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] Length = 447 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +ILL +D++++RR +AL AG+ V + + A +++ ++++DI MP MDG Sbjct: 3 ESRILLVDDEEELRRSSAQALELAGFRVDTFASAEYALERIAFSFHGVVISDIRMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +R E+D +L V+ +TG V L + + KPF + L + R L + Sbjct: 63 MTFLQRIREIDAELPVILVTGHGDVQLAVRAMREGAYDFVEKPFTAQMLAGSIRRALDWR 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|332705094|ref|ZP_08425176.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L] gi|332356044|gb|EGJ35502.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L] Length = 910 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + R LI L G+ +NG Y + E L+LTDIVMP MDG+E+ Sbjct: 703 ILIVDDHLNNRSLLINLLESIGFRCFEASNGQEGYQQATEIKPDLILTDIVMPIMDGLEM 762 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPD-SNAPKNA--KVLSKPFHLRDLVNEVNRLLT 119 A R ++ P++ +M ++ A A D +N+ K LSKP ++ L N++ + L Sbjct: 763 IGAIRKSQQLPNVVIMVVS---ASAFETDITNSIKTGADAFLSKPINMDYLFNQLQKYLK 819 Query: 120 I 120 I Sbjct: 820 I 820 >gi|294338490|emb|CAZ86816.1| Transcriptional regulatory protein [Thiomonas sp. 3As] Length = 456 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 59/121 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL +DD D+R+ L L AGY V+ +GA A + S ++TD+ M MD Sbjct: 1 MPATVLLVDDDPDLRQLLAIRLRSAGYAPVTAASGAEALGSLAASRPSAVITDLRMDGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L DP L V+ +T + D+ L+KPF R+L+ + R + + Sbjct: 61 GLSLFEHIRAQDPSLPVIILTAHGTIPDAVDATQRGVFGFLTKPFEARELLALLERAIAL 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|258543393|ref|YP_003188826.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634471|dbj|BAI00447.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637529|dbj|BAI03498.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640581|dbj|BAI06543.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643638|dbj|BAI09593.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646693|dbj|BAI12641.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649746|dbj|BAI15687.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652734|dbj|BAI18668.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655790|dbj|BAI21717.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-12] Length = 1105 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I + +D+ R+ + + L + G+ V NG D + LLL D+ MPEMDG Sbjct: 900 RTIGIVDDNSSHRQIMRELLERCGFNVRDFENGQECLDCLDLASPDLLLLDLTMPEMDGR 959 Query: 63 ELARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELA R + L +MF+TG + N + ++ V+ KP +L L+ E+ +L++ Sbjct: 960 ELALRIRQTSATHLPIMFLTGNLVESANRHVASLEDCPVIGKPVNLSMLIQEIGNILSL 1018 >gi|255010809|ref|ZP_05282935.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] gi|313148611|ref|ZP_07810804.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313137378|gb|EFR54738.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 1331 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+D++R +L L Y + +C+NG A V+E L+++DI+MPEM G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I ALN + N + K+ + KPF++ L V L Sbjct: 1128 EL---CAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATVANL 1184 Query: 118 LT 119 LT Sbjct: 1185 LT 1186 >gi|108758118|ref|YP_629196.1| response regulator [Myxococcus xanthus DK 1622] gi|9478262|gb|AAF87932.1|AF163841_11 putative response regulator [Myxococcus xanthus] gi|108461998|gb|ABF87183.1| response regulator [Myxococcus xanthus DK 1622] Length = 228 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-------REEPFSLLLTDIVM 56 +ILL ED +MR L +AL + GY+VV +G + + + L++TD+ M Sbjct: 103 RILLGEDQPEMRSLLRRALSRRGYDVVEAPDGPGLVKALVDGLLAQQTQVPDLIVTDVRM 162 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P GIE+ R V+ IT F L+ ++ A+VL+KPF + DL V Sbjct: 163 PGFSGIEVLARLRREGWTTPVILITAFGDAQLHQEAELLGAARVLNKPFAMEDLCEAVEM 222 Query: 117 LL 118 L+ Sbjct: 223 LV 224 >gi|265765934|ref|ZP_06093975.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|263253602|gb|EEZ25067.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] Length = 1330 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+D++R +L L Y + +C+NG A V+E L+++DI+MPEM G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I ALN + N + K+ + KPF++ L + L Sbjct: 1128 EL---CAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANL 1184 Query: 118 LT 119 LT Sbjct: 1185 LT 1186 >gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 230 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R + AL KAG + + ++GA+A + L++ DI MPEMD Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHTPDLVVLDIGMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ RR D+ V+F++ + + D ++KPF R+LV Sbjct: 61 GLEVCRRLRHTS-DVPVLFLSARDEEIDRILGLEMGGDD-------YVTKPFSPRELVAR 112 Query: 114 VNRLL 118 VN +L Sbjct: 113 VNVIL 117 >gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GYEV++ N+G A + VR E LL+ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ D A +A L KPF L +L+ V L+ Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVS---DRVAGLDAGADDYLPKPFALEELLARVRSLV 116 >gi|315500386|ref|YP_004089189.1| two component, sigma54 specific, transcriptional regulator, fis family [Asticcacaulis excentricus CB 48] gi|315418398|gb|ADU15038.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Asticcacaulis excentricus CB 48] Length = 447 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 59/117 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++L +DD D+ +AL G+ V + +GA A + +++TD+ MP +DGIE+ Sbjct: 8 LILIDDDADLLAAQSQALRLDGFTVQAFASGAEALKAIDATFPGVVITDVRMPVLDGIEV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R LDPDL V+ +TG V + + LSKPF DL V R L + Sbjct: 68 FARIRALDPDLPVILMTGHGDVPMAVQALKDGAYDFLSKPFAQDDLRQSVRRALQTR 124 >gi|94967996|ref|YP_590044.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94550046|gb|ABF39970.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 145 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 6/101 (5%) Query: 3 QKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +L DD++ + K L GY V++ +NG A D +R LLLTD+VMPE+DG Sbjct: 4 KRTILCVDDNEQSLSIRKVMLETRGYRVITTHNGREALDFIRRGGIDLLLTDLVMPELDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNA----PKNA 98 EL R+A EL P + +G + DS A PK A Sbjct: 64 NELIRKAKELSPFTPAILFSGHTKF-ITTDSQADLFLPKGA 103 >gi|94264883|ref|ZP_01288657.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] gi|93454653|gb|EAT04921.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] Length = 473 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI++ EDD +RR L + L AG + + +G +A+ ++ + L+L+D+ +P +DG+ Sbjct: 10 EKIMIVEDDAGLRRLLEEELSDAGLAIQTTADGTAAWQQLSQWQPDLVLSDLRLPGLDGL 69 Query: 63 ELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R +L P V+ IT F V ++ L+KP L L+ VNR L Sbjct: 70 ELLGRIRQLPPPQPAVIIITAFGTVPQAVEALKLGADDFLTKPLDLDHLLLCVNRTL 126 >gi|319898866|ref|YP_004158959.1| sensor histidine kinase [Bartonella clarridgeiae 73] gi|319402830|emb|CBI76381.1| sensor histidine kinase [Bartonella clarridgeiae 73] Length = 854 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED+D +R ++AL GY V+ +G A + E ++++D+VMPEMDG Sbjct: 737 VLLVEDEDSVRMSGVRALQMRGYTVLEAASGLEALAILEENRGVVDIIVSDVVMPEMDGP 796 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 L A + PD+K++F++G+ A N PK+A LSKPF L+ L V L Sbjct: 797 TLLIEARKNYPDIKIIFVSGYTKDAFT--KNLPKDAVFGFLSKPFTLKQLALAVKETL 852 >gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L++ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLDRI 113 >gi|322419866|ref|YP_004199089.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126253|gb|ADW13813.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 663 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMD 60 + IL+AEDD +R + + L K GY V+ NG D+ + + L+L DI+MP + Sbjct: 545 ETILVAEDDPGVRSLVDRVLTKHGYRVILAENGEEVVDRFAAQRDGIGLILMDIIMPRKN 604 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE ++ P+ KV+F +G+ A + +++ KP +L+ +V +L Sbjct: 605 GIEAWAEIKKMQPEAKVLFTSGYTADFIQ-SRGMHAGVELIMKPVQPVELLRKVREVL 661 >gi|253565107|ref|ZP_04842563.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|251946572|gb|EES86949.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] Length = 1330 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+D++R +L L Y + +C+NG A V+E L+++DI+MPEM G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I ALN + N + K+ + KPF++ L + L Sbjct: 1128 EL---CAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANL 1184 Query: 118 LT 119 LT Sbjct: 1185 LT 1186 >gi|78222457|ref|YP_384204.1| histidine kinase [Geobacter metallireducens GS-15] gi|78193712|gb|ABB31479.1| histidine kinase [Geobacter metallireducens GS-15] Length = 654 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+AEDD D+R+ L + GY V+ ++GA A + E LLL D+VMP+ + Sbjct: 535 ETILIAEDDRDVRKLSKLVLERNGYTVIEASDGAEAVRRFMENSTRIDLLLLDVVMPKRN 594 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + + P++K +FI+G+ ++ + ++KP +L+ ++ +L Sbjct: 595 GQSVYEEIRNIRPEMKALFISGYTQDIISRKGVLDEGINFIAKPVKPDELLAKIKEVL 652 >gi|53714602|ref|YP_100594.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|60682624|ref|YP_212768.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|52217467|dbj|BAD50060.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|60494058|emb|CAH08850.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1330 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+D++R +L L Y + +C+NG A V+E L+++DI+MPEM G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I ALN + N + K+ + KPF++ L + L Sbjct: 1128 EL---CAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANL 1184 Query: 118 LT 119 LT Sbjct: 1185 LT 1186 >gi|301164100|emb|CBW23656.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1330 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+D++R +L L Y + +C+NG A V+E L+++DI+MPEM G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I ALN + N + K+ + KPF++ L + L Sbjct: 1128 EL---CAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANL 1184 Query: 118 LT 119 LT Sbjct: 1185 LT 1186 >gi|219849926|ref|YP_002464359.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219544185|gb|ACL25923.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 128 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 N I+L ED+ D+ L + + GY++++ N+GA A ++ L++TD MP M Sbjct: 8 NPAIILVEDEPDILIILHRLMRDLTGGYDIITVNSGADALAQIALRRVPLVITDYNMPGM 67 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +G++LA E PD V+ IT +A L + + L KPF L Sbjct: 68 NGLQLAAAVKETSPDTSVVMITAYATPELEKRAREQRVDYYLPKPFSL 115 >gi|158320527|ref|YP_001513034.1| response regulator receiver protein [Alkaliphilus oremlandii OhILAs] gi|158140726|gb|ABW19038.1| response regulator receiver protein [Alkaliphilus oremlandii OhILAs] Length = 120 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M IL+ +D MR + L K G+EV+ NGA A +K +E +L + DI MPEM Sbjct: 1 MANGILIVDDAAFMRMMIKDVLTKNGFEVLGEAENGAKAIEKYKELQPNLTIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ + +LD + K++ + A+ ++ + KPF ++ V ++L Sbjct: 61 DGIQAVKEIKKLDSNAKIIMCSAMGQQAMVIEAIQAGAKDFIVKPFQADRVIEAVKKVL 119 >gi|90022498|ref|YP_528325.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952098|gb|ABD82113.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 540 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 5/122 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 ++IL+AEDD R+ + L K G ++ + NNG +A DK+ F L+L D+ MP MDG Sbjct: 187 KRILIAEDDLINRQQITAILDKTGAQLDTVNNGLAALDKLTNSGFFDLVLMDLQMPLMDG 246 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 IE R E +P+ + + I G +L D N + ++KP L++ VN+ L Sbjct: 247 IEATRTIRE-NPEWQQIPIIGLTENSLETDINMSLSVGTNEHINKPIEEEALLHIVNKWL 305 Query: 119 TI 120 TI Sbjct: 306 TI 307 >gi|325292776|ref|YP_004278640.1| Nitrogen assimilation regulatory protein [Agrobacterium sp. H13-3] gi|325060629|gb|ADY64320.1| Nitrogen assimilation regulatory protein [Agrobacterium sp. H13-3] Length = 483 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + V L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWVSAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + PDL V+ ++ ++ L KPF L +L+ + R L+ Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIAIIGRALS 119 >gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] Length = 234 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 1/108 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + RFL L G+E + NG AY+++ +E F ++L D+++P MDGIE Sbjct: 12 RVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + RR + ++ ++ +T AV + ++KPF + +L+ Sbjct: 72 ICRRVRAV-TNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELI 118 >gi|315502510|ref|YP_004081397.1| response regulator receiver sensor signal transduction histidine kinase [Micromonospora sp. L5] gi|315409129|gb|ADU07246.1| response regulator receiver sensor signal transduction histidine kinase [Micromonospora sp. L5] Length = 1227 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL A+D+ D+R +++ L A YEVV+ +G A E PF L+LTD++MP +DG Sbjct: 625 RILFADDNSDLREHVVRLLSPA-YEVVAVPDGVEALRLAVETPFDLVLTDVMMPRLDGFG 683 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + ++ ++ A A + L+KPF ++LV V Sbjct: 684 LVAALRAEPATRHVPIVLLSARAGAAEEVAGLSTGADDYLTKPFSSQELVARV 736 >gi|240142613|ref|YP_002967126.1| putative Periplasmic sensor hybrid histidine kinase precursor [Methylobacterium extorquens AM1] gi|240012560|gb|ACS43785.1| putative Periplasmic sensor hybrid histidine kinase precursor [Methylobacterium extorquens AM1] Length = 689 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 8/119 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 Q IL+ +D++ +RR + LG GYEV++ + A + + ++ L++TD+ + MDG Sbjct: 574 QCILVVDDEEAVRRISGEMLGHLGYEVLTASGAEEALELLAGKDDVELVITDLGLQGMDG 633 Query: 62 IELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A L P++++++ T G A +A N S+A VL+KP+ DL +V + L Sbjct: 634 TRLAEEARRLKPEIRILYATGSGHAELAANDGSSA-----VLAKPYSSGDLARKVQQAL 687 >gi|154497232|ref|ZP_02035928.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC 29799] gi|150273631|gb|EDN00759.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ +R + AL AGYE V NG A + + + L++ DI+MP+MDG E Sbjct: 3 RILVVEDDNGIRMLMEDALADAGYEPVLACNGLEALEVLESKHIDLIILDIMMPKMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ E D+ V+ +T ++ + KPF +++ V LL Sbjct: 63 LLRQIRESGMDMPVLLVTAKQTLSDKKKGFLLGADDYMVKPFEEEEMLLRVAALL 117 >gi|39997787|ref|NP_953738.1| response regulator [Geobacter sulfurreducens PCA] gi|39984679|gb|AAR36065.1| response regulator [Geobacter sulfurreducens PCA] gi|307635080|gb|ADI85452.2| response regulator, putative [Geobacter sulfurreducens KN400] Length = 128 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 57/113 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD + L L EV S + GA A D VR+ F +++TD MP M+G+EL Sbjct: 6 VLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVRKTTFDMVITDFSMPGMNGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A EL PDL VM +T L + +VL KP ++ L+ ++ Sbjct: 66 AAAVKELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRHF 118 >gi|115359270|ref|YP_776408.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115284558|gb|ABI90074.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 589 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EMD 60 + IL+ EDD ++R ++ L + GY+V++ ++G +A + + LL TD++MP + Sbjct: 465 ETILVVEDDAEVRLTVVDMLTQLGYKVLTASDGEAALQILDCDAHIDLLFTDVIMPGRIK 524 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELARRA + P L V+F +G+ + +L KP+ +L + +L Sbjct: 525 GGELARRAAQRTPPLPVLFTSGYTRDEIFHSGRLDPGVMLLGKPYRRDELAARIRDML 582 >gi|323700456|ref|ZP_08112368.1| anti-sigma-factor antagonist [Desulfovibrio sp. ND132] gi|323460388|gb|EGB16253.1| anti-sigma-factor antagonist [Desulfovibrio desulfuricans ND132] Length = 237 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 9/114 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN K+L+ +D+ + L GYEV++ NG + + E +L+LTDI MP MD Sbjct: 1 MNHKVLVIDDERPTLKMFTLLLTAYGYEVLTAENGLEGVEIFKRESPALVLTDIKMPIMD 60 Query: 61 GIELARRATELDPDLKVMFITG-----FAAVALNPDS----NAPKNAKVLSKPF 105 GIE + +L+P +V+ ITG A ALN D+ N P + L K Sbjct: 61 GIEALKAIKKLNPAAEVIVITGHGDMDLAIQALNLDATDFINKPLKREALEKAL 114 >gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R + AL KAG + +GA+A + L++ DI MPEMD Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGRRAPDLVVLDIGMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ RR + D+ V+F++ + + D ++KPF R+LV Sbjct: 61 GLEVCRRLRHIS-DVPVLFLSARDEEIDRILGLEMGGDD-------YVTKPFSPRELVAR 112 Query: 114 VNRLL 118 VN +L Sbjct: 113 VNVIL 117 >gi|297544390|ref|YP_003676692.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842165|gb|ADH60681.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 225 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L ED+ + L K L + GYEV + +G+SA ++++ P L + DI++P++D Sbjct: 1 MPRKIYLVEDERSLNVLLEKYLQREGYEVTTFLDGSSAMQRIKDLP-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + + + + V+FI+ + L D LSKPF R+LV Sbjct: 60 GYELIKAIKQYNQNTPVIFISARNEELDRVVGLELGSDD-------YLSKPFLPRELVIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|149279260|ref|ZP_01885392.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149230022|gb|EDM35409.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 249 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI +AEDD + + L + GY+V NG A + F LL+ D++MP M G+E Sbjct: 26 KIGIAEDDVKIAGLIRSGLEEQGYDVTVSTNGQVALQTFLDNDFQLLILDVMMPGMSGVE 85 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + ++ ++ +T ++ + L KPFH ++L+ + LL Sbjct: 86 ICRSLRQQQREMPILMLTALGSIDDKVTGLSSGADDYLLKPFHFKELLARIEALL 140 >gi|148264419|ref|YP_001231125.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146397919|gb|ABQ26552.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 769 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPE 58 +Q IL+ ED+ + ++ L K GY V+ + A +D+ + E L+LTD+VMP Sbjct: 639 SQTILVVEDEPGVLNLVVHTLNKQGYNVLETTDPLEALEIFDQHQTE-IDLVLTDVVMPF 697 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G +LA T+ P +K++F++G +N + K L+KPF LV +V L Sbjct: 698 MSGPKLAETLTQKKPGIKIIFMSGHTDDKINFEKILEKGVPFLAKPFVNGSLVKKVGHAL 757 >gi|114777319|ref|ZP_01452330.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114552464|gb|EAU54947.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 888 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMD 60 + ILL +D+ + L GY V++ +G A ++ R + LL+ D+VMP M Sbjct: 769 ETILLVDDEATVLATGKDVLESLGYNVLTATDGLKAVEQYIARRDEIDLLMLDVVMPHMG 828 Query: 61 GIELARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E R+ E+ PD++ +F+TG+ AL D +A V+ KPF + L + LL Sbjct: 829 GQEALRKIREITPDVRALFVTGYDKNDALVEDGDASPEM-VIKKPFSINKLSQAMRALL 886 >gi|21112738|gb|AAM40946.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574219|gb|AAY49629.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] Length = 968 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDI-VMPEM 59 ++ +LL ED+ +R + + L AGY V+ +G++A ++++ E LL+TD+ + + Sbjct: 842 SKTVLLVEDEAPIRILICEVLIDAGYRVIDVADGSTAVERLQSAEVIDLLVTDVGLTGAL 901 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ++A P L V+F+TG+AA A +VL+KPF DL V +LL Sbjct: 902 NGRQVADAGRLQRPALPVLFVTGYAASAAVGAGQLETGMEVLTKPFLAADLERRVGQLL 960 >gi|78187854|ref|YP_375897.1| response regulator receiver domain-containing protein [Chlorobium luteolum DSM 273] gi|78167756|gb|ABB24854.1| response regulator receiver domain protein (CheY-like) [Chlorobium luteolum DSM 273] Length = 122 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 18/122 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 MN IL+ +DD +R+F+ L + + V +NG + + + P L++TD++MPE Sbjct: 1 MNMNILVIDDDAAVRKFICTTLTREHHNVFEADNGKTGLQMLAQHPEVELMVTDLIMPEK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS----------KPFHLRD 109 +GIE A + P+LK++ ++G V P+N VL+ KPF ++ Sbjct: 61 EGIETIMEARQSHPELKIVAMSGGGKV-------GPENYLVLADALGANVTLKKPFSAQE 113 Query: 110 LV 111 L+ Sbjct: 114 LL 115 >gi|330878811|gb|EGH12960.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 264 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+ Sbjct: 145 GETVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMN 204 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A +L P LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 205 GRQLAEIARQLRPGLKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 262 >gi|297568216|ref|YP_003689560.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] gi|296924131|gb|ADH84941.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] Length = 844 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL ED+ + + L GY V+ + A ++P LLLTD+ MP + Sbjct: 724 ETILLVEDEVSLLNLIHNLLTMLGYHVLPVADPRQALRLADDQPGEIHLLLTDLAMPGLS 783 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELARR P LK++FI+G + + L KPF +L +V ++L Sbjct: 784 GLELARRLQAKRPQLKILFISGHPLESFAELQEQGEEINFLQKPFSREELATKVRQVL 841 >gi|322420048|ref|YP_004199271.1| two componentXRE family transcriptional regulator [Geobacter sp. M18] gi|320126435|gb|ADW13995.1| two component transcriptional regulator, XRE family [Geobacter sp. M18] Length = 231 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 7/119 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMD 60 ++ IL+ +D+ +R L + L GY+V++ +G A +K + P L++ D+VMP D Sbjct: 108 SETILIVDDEKQLREMLSEFLASYGYKVITAEDGQDAIEKYKVNGPIHLVVMDVVMPRKD 167 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI R +P+ + +F++G+ PD A ++ ++ KPF +++ + L Sbjct: 168 GISSFREIKSYNPEARAVFMSGY-----RPDHLQAGEDFHLIQKPFSPVEMIKAIRSAL 221 >gi|226228668|ref|YP_002762774.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091859|dbj|BAH40304.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 741 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL EDD R + + L + G++VV NG A ++ + E L+L+D++MPE++G+ Sbjct: 616 ILLVEDDPSTRGVIRRLLERHGFDVVEAANGVEAIAQLDDVHERVRLVLSDVMMPELNGM 675 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA E P + VM ++G+ + ++ + KPF L++ V R L Sbjct: 676 ALANIIAERWPTMPVMLMSGYTDADIPQQNSGALKRTFIEKPFTSGALLHAVMREL 731 >gi|254511701|ref|ZP_05123768.1| two component response regulator [Rhodobacteraceae bacterium KLH11] gi|221535412|gb|EEE38400.1| two component response regulator [Rhodobacteraceae bacterium KLH11] Length = 205 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 57/112 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++ + +DD D+R L ++L K G +V ++ S D+V E+ L+ D MP MDG+E Sbjct: 7 EVFIVDDDADVRIALSRSLSKRGMQVTHFSDAQSFLDQVDEDAEGCLILDYGMPGMDGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L + + + V+FI+G + + + L KPF L+ L+ + Sbjct: 67 LQEHLNQQNSTIPVIFISGHGGIPESVRATKAGAVDFLEKPFDLKVLIERIQ 118 >gi|149178995|ref|ZP_01857570.1| probable sensor kinase [Planctomyces maris DSM 8797] gi|148842194|gb|EDL56582.1| probable sensor kinase [Planctomyces maris DSM 8797] Length = 574 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 8/125 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N++IL+ + D +RR + LG+ G EV + ++G A+ VR + +++ DI +P+M+ Sbjct: 443 VNKRILVVDSDATVRRAAHELLGRLGCEVETAHDGEEAFLMVRSFHYDVVIADIRLPDMN 502 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVN 115 G E + E+ L V+ +TGF +P + K + VL KPF L L+ V Sbjct: 503 GYECFAQIREIHEHLPVILMTGF---GYDPTHSIVKARQLGLKCVLYKPFRLDQLITGVE 559 Query: 116 RLLTI 120 + ++I Sbjct: 560 KAVSI 564 >gi|222055857|ref|YP_002538219.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. FRC-32] gi|221565146|gb|ACM21118.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. FRC-32] Length = 348 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+A+D++ +R L LGK GY +N + + +P + DI+MP Sbjct: 1 MKEHILIADDEEMIRDLLCATLGKEGYYCHQASNAVEGLNVLESQPIEIAFLDIMMPGRS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+EL + A ++ PD+ V+ IT + ++KPF+L + LLT+ Sbjct: 61 GVELLKDARKVKPDISVLMITALNDMDTALSCIHLGAEDYITKPFNLDRV------LLTV 114 Query: 121 KN 122 +N Sbjct: 115 RN 116 >gi|94263564|ref|ZP_01287375.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456097|gb|EAT06244.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 816 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + ILL +D++ + LGK Y V C + A D +R + F LL+TD MP++ Sbjct: 680 EHILLVDDEEAVLEAAASGLGKLNYRVSVCRDPIEALDLLRVQQAADFDLLITDYSMPKL 739 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELA + +L +M TG+A+ + A + +L KP L E+ R+L Sbjct: 740 KGTELAAAVKVIRAELPIMLCTGYASKIDESAAMAMGISALLMKPLQQDILATEIRRVLD 799 Query: 120 IKN 122 KN Sbjct: 800 QKN 802 >gi|15888771|ref|NP_354452.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|142244|gb|AAA22093.1| nitrogen regulatory protein [Agrobacterium tumefaciens] gi|15156521|gb|AAK87237.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 483 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + V L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWVSAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + PDL V+ ++ ++ L KPF L +L+ + R L+ Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIAIIGRALS 119 >gi|23100461|ref|NP_693928.1| stage 0 sporulation protein F [Oceanobacillus iheyensis HTE831] gi|22778694|dbj|BAC14962.1| stage 0 sporulation protein F (sporulation initiation phosphotransferase F) [Oceanobacillus iheyensis HTE831] Length = 119 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D +R L + L GY V G A DK+ E+ + L++ D +P +D Sbjct: 1 MGNSILVVDDQPGIRLLLSEVLSNKGYTVTLAETGKDAIDKLGEKLYDLVILDYKLPVLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ ++ + K++ ++G A ++ + K K++SKPF+L DL ++V +L Sbjct: 61 GKEVIKQMDSSKYNTKIVVMSGMAE-SIQEEIAEYKVEKLISKPFNLNDLCSDVEGIL 117 >gi|116618064|ref|YP_818435.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096911|gb|ABJ62062.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 223 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 46/78 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ EDD + R L L G++V S AYDK+ + F ++L+D++MP +DG E Sbjct: 4 IIVVEDDPNFNRILSIYLSNHGHQVQSALGAQEAYDKMYNQLFDMILSDVMMPNIDGFEF 63 Query: 65 ARRATELDPDLKVMFITG 82 +++P++ ++F+T Sbjct: 64 TETVRKINPNIPILFVTA 81 >gi|307318618|ref|ZP_07598051.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium meliloti AK83] gi|306895645|gb|EFN26398.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium meliloti AK83] Length = 447 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 64/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +ILL +D++++RR +AL AG+ V + + A +++ ++++DI MP MDG Sbjct: 3 ESRILLVDDEEELRRSSAQALELAGFRVDTFASAEYALERIAFSFHGVVISDIRMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +R E+D +L V+ +TG V L + + KPF + L + + R L + Sbjct: 63 MTFLQRIREIDAELPVILVTGHGDVQLAVRAMREGAYDFVEKPFTAQMLADTIRRALDWR 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|90424623|ref|YP_532993.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90106637|gb|ABD88674.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 743 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 IL+ EDD +R + + L GY V+S +G A + + +L TDIVMP +G Sbjct: 621 ILIVEDDPFVRSYAVMCLRSLGYTVLSAVDGNEALQLLGGDARIDILFTDIVMPGGTNGW 680 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA RA ++ P+++V+ +G+A + + + +L+KP+ DL + +++ Sbjct: 681 DLAERAQQMRPEMRVLLTSGYALETMAARARIRDGSVILTKPYRKADLARRLRQMI 736 >gi|283782088|ref|YP_003372843.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pirellula staleyi DSM 6068] gi|283440541|gb|ADB18983.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pirellula staleyi DSM 6068] Length = 474 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ +D+ R+ + L AG +V C + A K+ + F L+LTD+ MP MD Sbjct: 10 LTGRILVVDDNARARQSMCDVLRHAGNDVQMCASAIEALQKLPSQEFDLILTDLQMPGMD 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++ R + D +V+ +T FA+V+ ++ L KPF L V R L Sbjct: 70 GLQFIRALQDRKIDSQVVMVTAFASVSSAVEAMRHGALDYLEKPFDADQLEQLVQRAL 127 >gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V+S +NG A + L + DI+MP MDGIEL Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 232 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRVRE-KHSLPIMFLSA 82 >gi|220918915|ref|YP_002494219.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956769|gb|ACL67153.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 713 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL + D R + +L KAG+ V + NG A ++ P L+L+D MPEMDG Sbjct: 4 QHLLLVDGDPKSLRVMEVSLKKAGFTVTTAVNGRDALERCAVSPPDLILSDTKMPEMDGF 63 Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR E + +F+TG +V L+KP +++++V V LL Sbjct: 64 ELCRRLKEDERHRGTPFIFLTGQKSVEYKVKGLELGVEDYLTKPIYIKEIVTRVKLLL 121 >gi|146342170|ref|YP_001207218.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194976|emb|CAL79001.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain (modular protein) [Bradyrhizobium sp. ORS278] Length = 1319 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++LA+D+ DMR ++ + LG YEV + +G +A + VR L+LTD++MP +DG Sbjct: 666 RVVLADDNSDMRDYVCRLLGD-DYEVEAVADGVAALETVRRRRPDLVLTDVMMPRLDGFG 724 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L +A DP D+ V+ ++ A + + LSKPF R+L+ V Sbjct: 725 LL-KALRSDPQRRDIPVVILSARAGEEAKVEGLDAGASDYLSKPFSARELLARV 777 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 9/116 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ F + L GY V +G A + + P F L+L+D+VMP MDG+ Sbjct: 1194 VLVVEDNPEIGEFSTQLLEDLGYRTVLARSGLDALRLIEDNPDGFDLVLSDVVMPGMDGV 1253 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + P + ++ +G++ V + D + ++ KP+ V+E++R+L Sbjct: 1254 TLGQEIRRRLPTIPIVLNSGYSDVLADGDRHG---FSLIHKPYS----VDELSRVL 1302 >gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 233 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +RRF++ L + GYEV+ +G A K E L++ D+++P MDG E Sbjct: 8 RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67 Query: 64 LARRATELDPDLKVMFIT 81 + R E PD+ V+ +T Sbjct: 68 VCRLLREKLPDMAVIMLT 85 >gi|320353025|ref|YP_004194364.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121527|gb|ADW17073.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1020 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVM 56 + +LL ED+ D+ R +++ LG Y V++ N A D+ P L++TD+VM Sbjct: 899 GETVLLVEDEAMILDVGREMLETLG---YTVLTANTPGEAIDQATAHPGEIQLVVTDVVM 955 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 PEM+G +LA L P LK +F +G+ A + + + KPF + +L +V Sbjct: 956 PEMNGRDLAHALRALRPGLKYLFASGYTADIIAHHGVLDEGVVFIQKPFSIHNLAAKVRE 1015 Query: 117 LL 118 L Sbjct: 1016 AL 1017 >gi|163847880|ref|YP_001635924.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525754|ref|YP_002570225.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] gi|163669169|gb|ABY35535.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449633|gb|ACM53899.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] Length = 131 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 N I+L ED+ D+ L + + GY++++ N+GA A ++ L++TD MP M Sbjct: 8 NPAIILVEDEPDILIILHRLMRDLTGGYDIITVNSGADALAQIALRKVPLVITDYNMPGM 67 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 +G++LA E PD V+ IT +A L + + LSKPF L +V +V R Sbjct: 68 NGLQLAAAIKETSPDTCVVMITAYATPELERRAREQRIDYYLSKPFPLDRLEQIVRDVLR 127 >gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 229 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ ED++++ R L L GYE V + GA + REE + L+L DI++PEM Sbjct: 1 MSNRILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++ +R + V+ +T + V ++KPF + +L+ + L Sbjct: 61 GIDVLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118 >gi|85860919|ref|YP_463121.1| response regulator receiver domain-containing protein [Syntrophus aciditrophicus SB] gi|85724010|gb|ABC78953.1| response regulator receiver domain and a sigma factor phosphatase domain [Syntrophus aciditrophicus SB] Length = 402 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D D+R L + L KAGY++ ++G +V+ L+L DIVMP +D Sbjct: 1 MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKAWKPDLILLDIVMPGID 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++ R + D+ V+F++ + A A A ++KPF +++ + Sbjct: 61 GYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIENQF 120 Query: 119 TIKN 122 I++ Sbjct: 121 KIRH 124 >gi|39995578|ref|NP_951529.1| sigma-54 dependent response regulator [Geobacter sulfurreducens PCA] gi|39982341|gb|AAR33802.1| sigma-54 dependent response regulator [Geobacter sulfurreducens PCA] gi|298504596|gb|ADI83319.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 453 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+AEDD R FL L GY++ +G A +R E F L+L+D+ MP + Sbjct: 1 MTTRILIAEDDSTFRGFLRTVLKGEGYDIREAADGEEALALLRRESFDLVLSDLRMPGIG 60 Query: 61 GIELARRATELDPDLKVMFITGFA----AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+EL R + + D + +T F AVA + A K L P LR LV V Sbjct: 61 GLELLRASRDDDYPPAFVILTAFGTIEEAVAAVKEGAADFLTKPLKDPDTLRVLVGRV 118 >gi|308068666|ref|YP_003870271.1| chemotaxis protein CheY [Paenibacillus polymyxa E681] gi|305857945|gb|ADM69733.1| Chemotaxis protein cheY-like protein [Paenibacillus polymyxa E681] Length = 121 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G+EVV +G+ A +K +E L+ DI MPEM Sbjct: 1 MANRILIVDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++D + KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 61 DGIAALKEIKQIDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQSDRVIEAINKTLG 120 Query: 120 I 120 + Sbjct: 121 V 121 >gi|302343181|ref|YP_003807710.1| response regulator receiver sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639794|gb|ADK85116.1| response regulator receiver sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 367 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+ R LG+ G V G + D VR +P L L D+ MP + G+++ Sbjct: 9 VLVVDDDESAREAATILLGRWGNRVSVAECGEAGLDVVRRDPPDLCLVDLQMPGISGLDV 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +D D++ + +TGFA + D+ L+KPF +L V+R L Sbjct: 69 LRAVKGIDADIQCVMVTGFATLRSAIDALQEGAYDFLAKPFSPDELKRAVDRAL 122 >gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 18/122 (14%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD + FLIK L +AGY + ++G A + + F ++L DI++P +DG++L Sbjct: 3 ILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGMQL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNEVN 115 + + F + + + N+P + LSKPFH +L++ + Sbjct: 63 TQI---------IRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIK 113 Query: 116 RL 117 L Sbjct: 114 AL 115 >gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +DD + FL L K GYEV NG A +K+ E F L+L DI+MP++D Sbjct: 1 MNYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G E + +L L ++F+T Sbjct: 61 GFEAIKIIRKLTNTL-IIFLTA 81 >gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 926 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 N IL+AEDD+ R L K L +G EV+S +G A V + P +L+L DI MP M Sbjct: 805 NLTILVAEDDNVNRILLEKVLTGSGIEVISVIDGIKAVQAVHDHPNINLVLMDIKMPNMS 864 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G E + + P L V+ T FA + + L+KPF + DL N ++ Sbjct: 865 GYEALQEIRQFRPALPVIAHTAFAYPEDKRYALEAGFNEFLAKPFRMDDLFNLIH 919 >gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila YIT 11841] gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila YIT 11841] Length = 230 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 46/64 (71%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ ++ F+ + L + G+EV ++G +A+ ++E F LL+ D++MP+MDG+E Sbjct: 8 KILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQEGVFDLLVLDVIMPKMDGLE 67 Query: 64 LARR 67 + R+ Sbjct: 68 VCRQ 71 >gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] Length = 231 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 44/67 (65%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ ED+ D++R L +AG++VVS +G +A V+EE F L+L D+++P+M Sbjct: 1 MPSHVLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMS 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GTEICRR 67 >gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 247 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 21 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 80 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 81 CRRVRE-KHSLPIMFLSA 97 >gi|307726047|ref|YP_003909260.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586572|gb|ADN59969.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 817 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD + + + L G+ + A + +PF +LLTD+ MP M G+E Sbjct: 705 RLLLVDDDVETAEAVGELLKLVGHNPTITGSPQEALRLLEAQPFDVLLTDLSMPAMPGLE 764 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LA RAT++ P L+V+F +G A+ S P L KP+ + +L Sbjct: 765 LAERATQMRPTLRVIFASGHEMPAV---STLPFRWGALRKPYSIDEL 808 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD D++ ++ L GY V+ N+ A VR LL TD+VMP + Sbjct: 527 ETILVVEDDKDVQSTVVDTLSGLGYSVLKANDAEQALAVVRSGVHIDLLFTDVVMPGPLR 586 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +A +L P LKV+F +G+ A+ ++LSKP+ L ++ ++L + Sbjct: 587 SPAMVAQAVQLLPRLKVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREQLAYKIRQILGV 646 >gi|239832006|ref|ZP_04680335.1| nitrogen regulation protein NR(I) [Ochrobactrum intermedium LMG 3301] gi|239824273|gb|EEQ95841.1| nitrogen regulation protein NR(I) [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY+V +N AS + V L++TD+ MP+ + +L Sbjct: 10 ILVADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVITDVNMPDENAFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N R L+ Sbjct: 70 LPRVKKMRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIAGRALS 124 >gi|168705000|ref|ZP_02737277.1| probable response regulatory protein (atoC) [Gemmata obscuriglobus UQM 2246] Length = 465 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + + ++L + G+ G + K+ +E F ++LTD+ M ++ G+E Sbjct: 9 QVLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLKMADLHGLE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV----NEVNRLLT 119 + R +L P+ +V ITGFA V ++ A L KP L +L N R+ T Sbjct: 69 VVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIENSAKRVGT 128 Query: 120 IKN 122 ++ Sbjct: 129 LRE 131 >gi|218900462|ref|YP_002448873.1| sporulation initiation phosphotransferase F [Bacillus cereus G9842] gi|218541765|gb|ACK94159.1| sporulation initiation phosphotransferase F [Bacillus cereus G9842] Length = 122 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ +T + + + ++ +KPF + ++ V L + Sbjct: 61 GIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLCALMHFAKPFDIDEIRQAVRNELAV 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|150020823|ref|YP_001306177.1| response regulator receiver protein [Thermosipho melanesiensis BI429] gi|149793344|gb|ABR30792.1| response regulator receiver protein [Thermosipho melanesiensis BI429] Length = 120 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +KIL+ +D MR L + KAG+EVV NG A +K +E ++ DI MPEM Sbjct: 1 MGKKILVVDDAAFMRMMLKDIITKAGHEVVGEAANGKEAVEKYKELKPDIVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +GIE + ++DP+ ++ + A+ ++ + KPF ++ + ++ Sbjct: 61 NGIEAIKEIKKIDPNATIIVCSAMGQQAMVIEAIQAGAKDFIVKPFQAARVIEAIQKV 118 >gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] Length = 247 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V+S +NG A + L + DI+MP MDGIEL Sbjct: 21 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 80 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 81 CRRIRE-KHSLPIMFLSA 97 >gi|308272878|emb|CBX29482.1| hypothetical protein N47_J04630 [uncultured Desulfobacterium sp.] Length = 147 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ D + K L K +EV +G A +R+ F + + D+ M EMDGIE Sbjct: 24 RLLLVDDEKDFVNVIAKRLSKRNFEVTKAFSGPEALRAIRKSDFDIAIIDLKMEEMDGIE 83 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + ++ P+L V+ +TG + A + ++ + L+KP +L N + + Sbjct: 84 VLKILAKMVPELPVIVLTGHGSEAASDEAMQYGAVEYLAKPCDFEELFNRIKEI 137 >gi|288554418|ref|YP_003426353.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288545578|gb|ADC49461.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 120 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 57/108 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D +R L + L K GY++ NG A V EE L+L D+ +P MDG+ Sbjct: 2 HKVLVVDDQYGIRVLLSEILQKDGYQLYQAANGVQALKVVEEESPDLVLLDMKIPGMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E+ RR E +++V+ +T + + L ++ +KPF + D+ Sbjct: 62 EILRRIKEKHEEVQVIMMTAYGELNLINEAMQLGAITHFAKPFDIDDV 109 >gi|255589574|ref|XP_002535010.1| two component histidine kinase, putative [Ricinus communis] gi|223524204|gb|EEF27375.1| two component histidine kinase, putative [Ricinus communis] Length = 479 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MD 60 + +LL ED+ D+ + GYEVV ++ + A D + E + +L DI MP M Sbjct: 364 ETVLLVEDEPDVLAVATELFVSIGYEVVPASSASEAVDILNERQDIRVLFADITMPRGMS 423 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIELA + E PD+K++ +G+ AL + + + KP+ L DL Sbjct: 424 GIELACQVREKHPDIKIVLTSGYPQAALRNEHALLGDFTFVHKPYRLADL 473 >gi|30019942|ref|NP_831573.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|29895487|gb|AAP08774.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] Length = 247 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG + + + L + DI+MP+MDGIEL Sbjct: 25 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 84 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 85 CRRIRE-KHSLPIMFLSA 101 >gi|320352958|ref|YP_004194297.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320121460|gb|ADW17006.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 220 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++L+ +D+ D+ L + L +AG +V + A + +R EP + L++TD+ MP + G Sbjct: 101 RVLIVDDEPDVVEILRRYLERAGLQVHGFIDSREALNGLRREPLAYDLVITDLDMPNLGG 160 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IEL + + PDL V+ ITG + + LSKP + L++ V RLL Sbjct: 161 IELREQLRTIRPDLPVIVITGHEGQCSGGPFSLSGVTEWLSKPINRNHLLDTVGRLL 217 >gi|308271005|emb|CBX27615.1| Transcriptional regulatory protein zraR [uncultured Desulfobacterium sp.] Length = 489 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 55/101 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD R L +G GYE+ N+GA+A D V +P+ L+L D+ M ++ GIE Sbjct: 43 ILVVDDDTAHRTMLRTLIGGWGYEISEANDGAAAIDAVNIKPYDLILMDVRMIKLSGIEA 102 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + ++P + V+ +T +++V ++ L+KP Sbjct: 103 LKEIKNINPAIPVIIMTAYSSVESAVEAIKYGAYDYLTKPL 143 >gi|89901511|ref|YP_523982.1| response regulator receiver domain-containing protein [Rhodoferax ferrireducens T118] gi|89346248|gb|ABD70451.1| response regulator receiver domain protein [Rhodoferax ferrireducens T118] Length = 194 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +DD + + + L + GY V++ N A A +K+ E+ + L+ TDI MP MDG Sbjct: 5 RKILVVDDDPVVGKSFNRVLSQDKGYVVITAENAAEALEKLHEQEYDLVFTDIKMPGMDG 64 Query: 62 IELARRATELDPDLKVMFITGFA 84 +ELA P V+ ITG+ Sbjct: 65 VELAEHVKASRPWTPVVIITGYG 87 >gi|78223121|ref|YP_384868.1| response regulator receiver modulated diguanylate cyclase [Geobacter metallireducens GS-15] gi|78194376|gb|ABB32143.1| response regulator receiver modulated diguanylate cyclase [Geobacter metallireducens GS-15] Length = 459 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 58/111 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD R+ + L + GYEV + +GA A + + + L++T++V+P M GIE Sbjct: 3 KILVVEDDRFFRQMYVDLLKEDGYEVDTVTSGARALELLSANDYQLVITELVIPGMSGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R + P + V+ +TG A V + L KPF+ + + V Sbjct: 63 LLTRVKQQMPTVDVILVTGHANVESAVLALKSGARDYLLKPFNHEEFKHTV 113 >gi|254254139|ref|ZP_04947456.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] gi|124898784|gb|EAY70627.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] Length = 588 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MD 60 + IL+ ED+ D+R I+ L + GY+V+S +G +A ++ + F LL TD+VMP + Sbjct: 462 ETILVVEDNADVRLATIEMLVRLGYKVLSAQDGDAALRLIQSGQRFDLLFTDVVMPGVVR 521 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR A+ + +V+F +G+ + D +LSKP+ + DL V L Sbjct: 522 SSELARIASGPPYNARVLFTSGYTRDVIFHDGKLDDGVALLSKPYRMDDLALAVRNAL 579 >gi|328863079|gb|EGG12179.1| hypothetical protein MELLADRAFT_32907 [Melampsora larici-populina 98AG31] Length = 126 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+A+D+DDMR F+ L + Y V ++G AY + L+++D +MP ++G Sbjct: 5 GSTILIADDNDDMRSFVRSVLSRY-YTVAEASDGLEAYHWAKAHHPDLVVSDAMMPALNG 63 Query: 62 IELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL +R + DPD + V+ ++ A + + A L KPF ++LV +N L Sbjct: 64 FELLKR-LKTDPDTAGISVILLSAHAGSEIRVEGLAEGADDYLVKPFEAKELVARINTHL 122 Query: 119 TIK 121 + Sbjct: 123 QLS 125 >gi|322412685|gb|EFY03593.1| DNA-binding response regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 228 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ ++ + L +AGY++ ++GA A D R++ + L+++DI+MP MD Sbjct: 1 MAYKILLVDDELEITDINKRYLQQAGYQITVASDGAQALDVFRKDHYHLIISDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + P+ +FIT +++L D +SKPF R+LV Sbjct: 61 GYDFIGEVLLEKPEQPFLFITAKLSEPDKIYSLSLGADD-------FISKPFSPRELVLR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKNIL 118 >gi|193215339|ref|YP_001996538.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] gi|193088816|gb|ACF14091.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] Length = 125 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 2/110 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 +L+ +D++D+RR L L K G+EV +G + + + +L DI MPE++G Sbjct: 11 VLVVDDEEDLRRILSNILRKKGFEVFDAEDGKKGLEIFEAFQHKIGYILADINMPELNGK 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 ELA +LD +K++ I+G ++A + + K + ++KPF + +L+ Sbjct: 71 ELAAEIRKLDVSVKIILISGDYSLAEVDNFSKEKALQFMAKPFRIDELLK 120 >gi|166033420|ref|ZP_02236249.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC 27755] gi|166026605|gb|EDR45362.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC 27755] Length = 228 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 62/114 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MDG+E Sbjct: 4 RLLIVEDEKQICDAIAKSLYDAGYEVDTCYDGEEALECILTENYDLVVLDLNLPGMDGME 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + + + + KV+ ++ +A + + KPFHL++L + L Sbjct: 64 ILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 117 >gi|297568040|ref|YP_003689384.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296923955|gb|ADH84765.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 624 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ +D+ + L LG GY + A R++P F L+++D MP + Sbjct: 501 ERILVVDDESRIVEMLTGLLGHLGYRAQGRTDSREALALFRQDPRAFDLVISDQTMPGLT 560 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA+ E+ PDL V+ TGF+ + L KPF L D+ V R+L Sbjct: 561 GGELAKALREIRPDLPVIICTGFSTRMSAEQARREGIDGYLMKPFSLDDIAGLVRRVL 618 >gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] Length = 242 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRVRE-KHSLPIMFLSA 92 >gi|190892092|ref|YP_001978634.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190697371|gb|ACE91456.1| putative two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 691 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 +ILL +DD + ++ L G++VV N+G+ A + +R F +++TD MP M G Sbjct: 568 RILLVDDDTLIAMSSVEMLEDLGHDVVEANSGSQALEVIRSGGHFDVMITDYSMPGMTGA 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA+ + P L ++ TG+A + + N P+ L KP++ LV E+++ + Sbjct: 628 QLAQAVRAIRPALPIVLATGYADLPAGAEVNLPR----LGKPYNQDQLVREIHKAI 679 >gi|94265547|ref|ZP_01289294.1| PAS [delta proteobacterium MLMS-1] gi|93453947|gb|EAT04297.1| PAS [delta proteobacterium MLMS-1] Length = 825 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ +I LGK GY V + +G A +R + L+L D+ MPE+DG++ Sbjct: 562 RILLAEDNPTNQQVVIAILGKNGYPVDAVADGRQALAALRRISYDLVLLDLRMPELDGLQ 621 Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR L+P + ++ +T A +S A LSKP R+L+ V + L Sbjct: 622 TARAIRSGNYGVLEPGVPIIALTAQAGERGRRESLAAGMNDCLSKPVAARELLRAVAQWL 681 >gi|325285244|ref|YP_004261034.1| putative two component, sigma54 specific, transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324320698|gb|ADY28163.1| putative two component, sigma54 specific, transcriptional regulator [Cellulophaga lytica DSM 7489] Length = 387 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ ED+ +RR L+K L + Y V +G D +++ + L+L DI MP+MD Sbjct: 2 SKILVIEDEAAIRRVLVKILSEESDTYNVEEAEDGLKGIDAIKKNDYDLVLCDIKMPKMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ A +L P+L + I+G + ++ +SKP L L+ V L Sbjct: 62 GVEVLEAARKLKPELAFIMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLTTVRNALDR 121 Query: 121 KN 122 KN Sbjct: 122 KN 123 >gi|322421165|ref|YP_004200388.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320127552|gb|ADW15112.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 468 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L + L Y V + NG +A + ++++ F L++TD+ MP M+G E+ Sbjct: 3 ILVVDDESVIREGLSRILEGDTYTVDAAKNGHAAIELLQQKQFDLIITDLKMPGMNGFEV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L PD V+ ITGFA V ++ + KPF ++ +V L K Sbjct: 63 LNAVKILQPDTPVIMITGFATVETAVEAMKNGTVDYIVKPFTPEQILEKVQLALEQK 119 >gi|229527875|ref|ZP_04417266.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae 12129(1)] gi|229334237|gb|EEN99722.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae 12129(1)] Length = 450 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +GASA D + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALDAIEQQNFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|258404905|ref|YP_003197647.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797132|gb|ACV68069.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1019 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL EDD+D + + L + GY+V + ++ A D+ RE P F +++TD MPE++ Sbjct: 895 ERILFVEDDEDQIATIPRVLEQLGYQVQAESDVTKALDRFRETPDQFDVVITDFDMPEVN 954 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+ELA+ + P V+ ++G A+ K++ KP++ L + +T Sbjct: 955 GLELAKEIKTIAPTTPVILVSG-RETAIQALGQVDNICKLVRKPYNRLSLSQAIREAMT 1012 >gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1427 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLA+D+ DMR ++ + LG++ YEV + +G +A + ++ L+++DI+MP +DG+ Sbjct: 650 RVLLADDNPDMRDYVARLLGES-YEVDAVGDGVAALEAAWKQRPDLVISDIMMPRLDGLS 708 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L A R D+ V+F++ A + LSKPF R+L+ V L I Sbjct: 709 LLKALRNDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLDI 767 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ F + L GYE V ++ A + ++ F+++L+D+VMP MDG+ Sbjct: 1307 VLVVEDNSEVGEFSTQLLHDLGYETVLASSAEQALKLLDQDADRFNIVLSDVVMPGMDGV 1366 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R + P+L V+ +G+A V + + ++L KP+ + DL + R +T Sbjct: 1367 ALGREIRKRLPNLPVVLNSGYAHVLAD---DGHHGFELLHKPYSVEDLSKVLRRAMT 1420 >gi|254413082|ref|ZP_05026854.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180246|gb|EDX75238.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 435 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L AL + GYEV S NG+ A + L+L DI MP+M+G ++ Sbjct: 13 ILIVDDTADSLRLLEAALTRYGYEVRSTVNGSMALMAAKAVAPDLILLDIKMPDMNGYDV 72 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 A +A+ + D+ ++FI+ V + A A ++KPF +++ V+ LTI+ Sbjct: 73 CSALKASPVTRDIPIIFISALDEVFDKVKAFALGGADYITKPFQFEEVLARVDHQLTIRQ 132 >gi|197124135|ref|YP_002136086.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196173984|gb|ACG74957.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 714 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL + D R + +L KAG+ V + NG A ++ P L+L+D MPEMDG Sbjct: 4 QHLLLVDGDPKSLRVMEVSLKKAGFTVTTAVNGRDALERCAVSPPDLILSDTKMPEMDGF 63 Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR E + +F+TG +V L+KP +++++V V LL Sbjct: 64 ELCRRLKEDERHRGTPFIFLTGQKSVEYKVKGLELGVEDYLTKPIYIKEIVTRVKLLL 121 >gi|171059362|ref|YP_001791711.1| two component sigma-54 specific Fis family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170776807|gb|ACB34946.1| two component, sigma54 specific, transcriptional regulator, Fis family [Leptothrix cholodnii SP-6] Length = 444 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD MR ++ + AG +V + A V+ +++TD+ +P MDG+ + Sbjct: 7 VLIIEDDAHMRLGCVQVMQLAGIQVQGFGSAEEALRLVKPGFHGVIVTDMRLPGMDGMAV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R +LD DL V+ ITG + + DS ++KPF L+ V R L Sbjct: 67 IKRCRQLDADLPVLVITGHGDITMAVDSMRSGAYDFITKPFAPELLLEVVQRAL 120 >gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032] gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ DM + L + G+ +++ NNG A ++ +EP L++ DI+MP+MDG E+ Sbjct: 7 ILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPDMDGFEV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 +R + + ++F+T A + + + K ++ + KPF LR+L + L Sbjct: 67 CQRIRQ-TSQIPILFLT-----ARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTL 119 >gi|90418236|ref|ZP_01226148.1| putative PAS sensor histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337908|gb|EAS51559.1| putative PAS sensor histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 1067 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R ++ L + GY + +G S + E LL+TD+ +P M+ Sbjct: 947 RTVLVIDDEPLVRMLVVDVLEELGYTALEAGDGPSGMKVIESEARIDLLITDVGLPNGMN 1006 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A ++ LKV+FITG+A A+ + +V++KPF + DL + +L Sbjct: 1007 GRQVAEAARQIRAGLKVLFITGYAENAVLNHGHLEHGMQVVTKPFDMGDLTRRIQAIL 1064 >gi|328958559|ref|YP_004375945.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328674883|gb|AEB30929.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 543 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 3/115 (2%) Query: 6 LLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L +D+ D+R+ +I+ + K G+E++ +NG A + + + +L+TDI MP MDGI Sbjct: 1 MLVDDEQDIRQSIIELVHWEKMGFEIIGEASNGEEALEVMEDNVPDILITDIKMPIMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EL++R E +P +K++F++G+ + L KP + DL N + ++ Sbjct: 61 ELSKRVREENPAVKIVFLSGYEDFEYAVSGIKLTILEYLLKPASISDLENMLGKV 115 >gi|325473731|gb|EGC76920.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola F0402] Length = 473 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R L AL GYEV++ +NG + D ++ L++TD+ MPE+ Sbjct: 1 MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEVDLVITDLKMPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ R P + V+ +TG V ++ L+KP L L V R L Sbjct: 61 GEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRAL 118 >gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRIRE-KHSLPIMFLSA 92 >gi|241204986|ref|YP_002976082.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858876|gb|ACS56543.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 721 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 KI+L +DD + + L G+EVV N+G+ A + + + F L++TD MP M G Sbjct: 572 KIILVDDDALIAMSSVDMLEDLGHEVVEANSGSQALELISSGQHFDLVITDYSMPGMTGA 631 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA+ A ++ P L ++ TG+A + D + P+ L+KP+ L E+ + + Sbjct: 632 QLAQAARDICPGLPIVLATGYADLPAGTDIDLPR----LAKPYDQAQLAKEIAKAM 683 >gi|154495097|ref|ZP_02034102.1| hypothetical protein PARMER_04144 [Parabacteroides merdae ATCC 43184] gi|154085647|gb|EDN84692.1| hypothetical protein PARMER_04144 [Parabacteroides merdae ATCC 43184] Length = 1317 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 19/124 (15%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED +DMR F+ + L + Y+V+ NG A D VR+ +L+++D++MP MDG EL Sbjct: 1067 ILIVEDQNDMRHFIARELAET-YQVLEAENGKVALDLVRKNTVNLIISDVMMPIMDGFEL 1125 Query: 65 ARRATELDPDLKVMFITGFAAVA----------LNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ D+ V I A LN ++A + KPF + L +V Sbjct: 1126 ---CNEMKNDVNVSHIPFILLTAQHNLQSRLKGLNSGADA-----YMEKPFSIELLTAQV 1177 Query: 115 NRLL 118 LL Sbjct: 1178 GNLL 1181 >gi|297183146|gb|ADI19288.1| response regulator containing chey-like receiver, AAA-type ATPase, and DNA-binding domains [uncultured SAR406 cluster bacterium HF0500_01L02] Length = 518 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 36/101 (35%), Positives = 54/101 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D+ D + I L + GY ++SC+NG ++ + E F L+L D MP +DG+E Sbjct: 7 KILWVDDEIDHLKPHILFLEERGYSIISCDNGKDGIEQSKIEAFDLVLLDQFMPGIDGME 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 R E +P L V+ IT L ++ + K A L KP Sbjct: 67 TLREIKEHNPALSVIMITKSEEEWLMDEAISEKIAHFLIKP 107 >gi|291546162|emb|CBL19270.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 223 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD ++R+ L K GY V ++G A D + ++ + L+++DI+MP MDG E Sbjct: 3 KILIAEDDLELRQLFRHVLLKNGYTVKGVSDGQEALDALEKDYYDLIISDIMMPNMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + + V+ +T A + + KP ++ +LV V LL Sbjct: 63 LVRSLRDAGDSIPVLMVTAKDAFDDMRMGFLSGSDDYMVKPVNINELVLRVGALL 117 >gi|253699046|ref|YP_003020235.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251773896|gb|ACT16477.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 453 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 10/124 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD + + ++L +AGY+V +GA A + V EE F L+L DI +P+ DG++ Sbjct: 5 KLLMVEDDRLLGDLMQESLEEAGYQVRLARSGAEALEAVSEESFDLVLQDIQLPDADGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + P K + +T FA V A K K+ L KPF + L ++ ++L Sbjct: 65 VLEEILRRQPQWKALVMTAFATV-----DRAVKAMKIGAFDFLIKPFAMDMLFLKLEKVL 119 Query: 119 TIKN 122 + Sbjct: 120 EFRQ 123 >gi|116252013|ref|YP_767851.1| two component response regulator nitrogen regulation protein NR(I) [Rhizobium leguminosarum bv. viciae 3841] gi|115256661|emb|CAK07749.1| two component response regulator nitrogen regulation protein NR(I) [Rhizobium leguminosarum bv. viciae 3841] Length = 483 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWISAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 118 >gi|78223656|ref|YP_385403.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194911|gb|ABB32678.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 461 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +RR L L + GYEV++ +G + +L++TD+ MP M G + Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQ 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L R E PD V+ IT F AV ++ ++KPF+ L V + L ++ Sbjct: 70 LLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQG 128 >gi|114046853|ref|YP_737403.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. MR-7] gi|113888295|gb|ABI42346.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. MR-7] Length = 446 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ + +G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAIIALKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + + L+KPF L+N+V+R L +K Sbjct: 65 LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] Length = 242 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRVRE-KHSLPIMFLSA 92 >gi|149924907|ref|ZP_01913239.1| regulator protein pilR [Plesiocystis pacifica SIR-1] gi|149814217|gb|EDM73828.1| regulator protein pilR [Plesiocystis pacifica SIR-1] Length = 363 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ +D+ MR FL LG+AG+EV + +GA A + EE + +++TD+ MP + G+ Sbjct: 1 MLIVDDEVGMREFLAVCLGRAGHEVTAAKSGADALRLLSEEEGRYDVVITDLTMPGVPGM 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R A L +V+ +T +A ++ L KPF + ++ V R L Sbjct: 61 EVLRHACALPSAPQVIMVTAYATTDTAVEAMKIGAYDYLIKPFKVDEIQVVVQRAL 116 >gi|149185693|ref|ZP_01864009.1| two component sensor kinase/response regulator hybrid [Erythrobacter sp. SD-21] gi|148830913|gb|EDL49348.1| two component sensor kinase/response regulator hybrid [Erythrobacter sp. SD-21] Length = 797 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 N+ IL+ EDD D+R ++ L GY+V+ N SA V+ LL TD+VMP ++ Sbjct: 538 NEVILVVEDDPDVRSTTVEVLSNLGYKVIEAANADSALAIVQCGIAIDLLFTDVVMPGKL 597 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA+ A E P++ V+F +G+ A+ ++SKP+ L +V ++L Sbjct: 598 RSTELAQIAKEHLPNIGVLFTSGYTQNAIVHAGKLDDGIDLISKPYSAERLSQKVRKVL 656 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL ED+ +R + L G++V+ + A + + +++D+ +P+ + Sbjct: 689 RKILLVEDEPLIRTNTAEGLESLGHDVIEAGSLKEARELLETSQLDTIVSDLSLPDGNAA 748 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E PD++++ TG A PD + VL+KPF DL Sbjct: 749 EFLLDVKTTHPDMRLILATGGAI----PDELRSQQFSVLAKPFSDDDL 792 >gi|91215216|ref|ZP_01252188.1| C4-dicarboxylate transport transcriptional regulatory protein [Psychroflexus torquis ATCC 700755] gi|91186821|gb|EAS73192.1| C4-dicarboxylate transport transcriptional regulatory protein [Psychroflexus torquis ATCC 700755] Length = 390 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+D +RR L K L + Y V +G + +++ + L+L DI MP+MDG Sbjct: 3 KILIIEDEDAIRRVLKKILLEEEQNYIVEEAEDGLLGIELIKKNNYDLILCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +E+ +L+PDL V+ I+G + ++ +SKP L L+N V Sbjct: 63 LEVLSACQKLNPDLPVVMISGHGDIETAVETMRMGAFDYISKPPDLNRLLNTV 115 >gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ralstonia eutropha JMP134] gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 1152 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ DMR++L + L K YEV N+G A ++ LLLTD++MP +DG+ Sbjct: 642 RILVADDNADMRQYLARLLSK-DYEVELANDGQDALARIHARSVELLLTDVMMPGLDGLG 700 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A R DL ++ ++ A + L+KPF R+L+ V Sbjct: 701 LLHALRTDPKTADLPIIMLSARAGEESLAEGVEAGADDYLTKPFSARELLARV 753 >gi|42527474|ref|NP_972572.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola ATCC 35405] gi|41818059|gb|AAS12483.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola ATCC 35405] Length = 473 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R L AL GYEV++ +NG + D ++ L++TD+ MPE+ Sbjct: 1 MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEVDLVITDLKMPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ R P + V+ +TG V ++ L+KP L L V R L Sbjct: 61 GEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRAL 118 >gi|332712494|ref|ZP_08432420.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332348789|gb|EGJ28403.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1356 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 4/118 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ IL+ +D+ +R L + L GY + +G A ++++EP L++ D+VMP+M+G Sbjct: 1159 DKTILIVDDEAPIRELLKQHLRAEGYRIQEAQDGWEAIQQIKQEPPDLIILDVVMPKMNG 1218 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + A + DL M I +++ D +A + LSKP +L +L+ +V RL + Sbjct: 1219 FD---TAAVVKNDLHSMDIP-IIILSITEDQHALGVERCLSKPINLEELLKDVVRLTS 1272 >gi|315181602|gb|ADT88515.1| sensor histidine kinase/response regulator LuxN [Vibrio furnissii NCTC 11218] Length = 683 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 38/64 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L K GYEVV N+G A D + F L+L DI MP +DGI Sbjct: 565 RRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAIEHNEFDLILMDIEMPIIDGI 624 Query: 63 ELAR 66 E R Sbjct: 625 EATR 628 >gi|313903337|ref|ZP_07836729.1| response regulator receiver protein [Thermaerobacter subterraneus DSM 13965] gi|313466425|gb|EFR61947.1| response regulator receiver protein [Thermaerobacter subterraneus DSM 13965] Length = 119 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D MR L L +AG+ V+ NGA A ++ R+E L+L DI MP MDG+ Sbjct: 3 KILVADDAAFMRMRLSNLLTEAGHTVLEATNGAEAVEQYRQERPDLVLLDITMPVMDGLA 62 Query: 64 LARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +DP +++ + G A+ L + ++ + KPF +++ V+R+L Sbjct: 63 AIEAIRGIDPQARIVVCSSLGQQAIVLKAIQSGARD--FIVKPFQPERVLDAVSRVLA 118 >gi|307303531|ref|ZP_07583285.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium meliloti BL225C] gi|306902922|gb|EFN33514.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium meliloti BL225C] Length = 447 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +ILL +D++++RR +AL AG+ V + + A +++ ++++DI MP MDG Sbjct: 3 ESRILLVDDEEELRRSSAQALELAGFRVDTFASAEYALERIAFSFHGVVISDIRMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +R E+D +L V+ +TG V L + + KPF + L + R L + Sbjct: 63 MTFLQRIREIDAELPVILVTGHGDVQLAVRAMREGAYDFVEKPFTAQMLAGTIRRALDWR 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|312140719|ref|YP_004008055.1| two component system response regulator [Rhodococcus equi 103S] gi|325675642|ref|ZP_08155326.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|311890058|emb|CBH49376.1| putative two component system response regulator [Rhodococcus equi 103S] gi|325553613|gb|EGD23291.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 226 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD+ + L +ALG+ GY V G SA ++ F LL+ D+ +P MDG+E+ Sbjct: 4 VLLAEDDEAIAAPLSRALGREGYTVTIEQTGPSALERALTGEFELLILDLGLPGMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ DL V+ +T V L+ ++ + KPF L +L+ V LL Sbjct: 64 CRQLRAHSLDLAVLMLTARTDEVDFVVGLDAGAD-----DYVGKPFRLAELMARVRALL 117 >gi|257457919|ref|ZP_05623078.1| acetoacetate metabolism regulatory protein AtoC [Treponema vincentii ATCC 35580] gi|257444632|gb|EEV19716.1| acetoacetate metabolism regulatory protein AtoC [Treponema vincentii ATCC 35580] Length = 456 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ ++R L AL GYEV++ +G K E L++TD+ MP + Sbjct: 1 MKFKILVIDDEKNIREGLQMALEDEGYEVLTAEDGTDGLQKALSEVVDLVITDLRMPGVG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ RR T P + V+ +TG V ++ L+KP L L V R L Sbjct: 61 GQEILRRVTSETPGVPVIVLTGHGTVEAAVEAMRMGAYDFLTKPLDLDRLSLLVKRAL 118 >gi|322418816|ref|YP_004198039.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125203|gb|ADW12763.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 856 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +LL EDD +RR ++AL + GY V+ + A R+E + +LTD+VMP M+G Sbjct: 738 VLLVEDDALVRRMTLRALEELGYTVIQASGAEEAIAICRDEGTRIDGILTDVVMPGMNGK 797 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ P L V+F++G+ + + + KPF L+ L ++ L K Sbjct: 798 EMVDVIETFRPGLNVLFMSGYTKDLVAQRGVVDEGRHFIQKPFDLQSLGRKLKETLQHK 856 >gi|229080381|ref|ZP_04212905.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2] gi|228702943|gb|EEL55405.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2] Length = 230 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDD+ + + L AGY+V +C NG A+ K + P+ L++ DI++P M+ Sbjct: 11 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNPYQLVILDILLPGMN 70 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-----KVLSKPFHLRDLVNEVN 115 G EL R +L+ + V+ +T AL+ D N ++ ++KPF ++ L+ V Sbjct: 71 GHELLREFRKLN-NTPVLMMT-----ALSDDENQIRSFDAEADDYVTKPFKIQLLLKRVE 124 Query: 116 RLL 118 LL Sbjct: 125 ALL 127 >gi|118397834|ref|XP_001031248.1| Response regulator receiver domain containing protein [Tetrahymena thermophila] gi|89285573|gb|EAR83585.1| Response regulator receiver domain containing protein [Tetrahymena thermophila SB210] Length = 1466 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 6/123 (4%) Query: 2 NQKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N++ILL +D + L L G E+ NG SA ++V++E F L+L DI MP MD Sbjct: 1341 NKRILLVDDMPFNIQILKNYLKGVENLEIKEAFNGMSAIEQVQQEKFDLILMDINMPLMD 1400 Query: 61 GIELARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 GIE + TEL + ++ ++ + A+ +S A +SKP ++ L++E+N Sbjct: 1401 GIEATFKITELIKSNQIQPVPIIIVSAYTAIQDIQNSLKSGAAGHVSKPISIKSLISEIN 1460 Query: 116 RLL 118 ++L Sbjct: 1461 KVL 1463 >gi|113969623|ref|YP_733416.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. MR-4] gi|113884307|gb|ABI38359.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. MR-4] Length = 446 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ + +G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAIIALKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + + L+KPF L+N+V+R L +K Sbjct: 65 LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|23009528|ref|ZP_00050543.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 98 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 25 AGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 GY V+ +G A + E ++++D+VMPEMDG L R + PDLKV+F++G Sbjct: 1 CGYTVLEAASGIEALRLIEEHADGIDVVVSDVVMPEMDGPTLLRELRKHYPDLKVIFVSG 60 Query: 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A A + + L KPF L+ LV V R + Sbjct: 61 YAEDAFRKNLPEGEAFNFLPKPFSLKQLVETVKRTM 96 >gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 233 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ IL+ ED++ + R L L GY+V NG + + + L+L DI++P ++ Sbjct: 1 MNQSILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGIN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIEL RR + D ++ V+ +T +++A + ++KPF + +L+ V L + Sbjct: 61 GIELLRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRV 120 >gi|239908300|ref|YP_002955041.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239798166|dbj|BAH77155.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 344 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDG 61 +IL A+DD MR L + L K G+ V +C +G SA DK E+P LL+TD +MP +DG Sbjct: 2 RILTADDDPIMRARLCRYLQKNGHTVETCCDGLSAIDKFFSYEDPPELLITDWMMPNLDG 61 Query: 62 IELARRATE 70 IELA+R + Sbjct: 62 IELAKRVRQ 70 >gi|225181575|ref|ZP_03735016.1| response regulator receiver protein [Dethiobacter alkaliphilus AHT 1] gi|225167683|gb|EEG76493.1| response regulator receiver protein [Dethiobacter alkaliphilus AHT 1] Length = 120 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR L L K GYEVV +G + DK +E L+ DI MP M Sbjct: 1 MGRQVLITDDTAFMRMTLRNILEKNGYEVVGEAEDGQVSVDKYKELRPDLVTMDITMPNM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI ++ E DP K++ + AL ++ + KPF ++N V +++ Sbjct: 61 DGITAIKKIMETDPGAKIVVCSAMGQKALVIEALNAGARDFIVKPFQADRIINAVQKVI 119 >gi|254504121|ref|ZP_05116272.1| Sigma-54 interaction domain family [Labrenzia alexandrii DFL-11] gi|222440192|gb|EEE46871.1| Sigma-54 interaction domain family [Labrenzia alexandrii DFL-11] Length = 447 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 55/117 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QKIL +D++ +R ++L G EV N V + +L+TDI +P DG Sbjct: 3 TQKILFVDDEEHLRFTAKQSLELEGLEVECFPNADQVLQHVTRDFRGILVTDIRLPGTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L R+A E+DP V+ +TG V L S + KPF LV V R L Sbjct: 63 LTLMRKALEIDPSFPVILVTGHGDVELAVSSMRDGAYDFIEKPFPPSRLVETVRRAL 119 >gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLLT 119 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARIRAIFR 118 Query: 120 IKN 122 +++ Sbjct: 119 LQD 121 >gi|190891642|ref|YP_001978184.1| two-component response regulator nitrogen regulation protein [Rhizobium etli CIAT 652] gi|190696921|gb|ACE91006.1| two-component response regulator nitrogen regulation protein [Rhizobium etli CIAT 652] Length = 483 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWISAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 118 >gi|327191427|gb|EGE58450.1| two-component response regulator nitrogen regulation protein [Rhizobium etli CNPAF512] Length = 483 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWISAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 118 >gi|326802533|ref|YP_004320352.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326553297|gb|ADZ81682.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 236 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+ILL ED++ + + L GY+V + +G A K +EE F+L++ D+++PE+DG Sbjct: 5 QRILLVEDEEHLLEAIKLNLELEGYKVTTATDGKKALKKFKEERFNLIILDVMIPEIDGF 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 ++A + ++ +MF+T + + + K A L KPF+L +L+ V L+ Sbjct: 65 QVAETIRLENTEVPIMFLTA-KNTSEDRITGLKKGADDYLVKPFNLEELILRVGNLV 120 >gi|317129195|ref|YP_004095477.1| response regulator receiver protein [Bacillus cellulosilyticus DSM 2522] gi|315474143|gb|ADU30746.1| response regulator receiver protein [Bacillus cellulosilyticus DSM 2522] Length = 120 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M K+L+ +D MR + L K G+EVV +GA + +E L+ DI MPEM Sbjct: 1 MAVKVLIVDDAAFMRMMIKDILTKNGFEVVGEAGDGAQGVEMFKEHKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + ++DP+ KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 61 DGITSLKEIRKVDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQAERVLEAINKTL 119 >gi|119898205|ref|YP_933418.1| transcriptional regulator [Azoarcus sp. BH72] gi|119670618|emb|CAL94531.1| transcriptional regulatory protein [Azoarcus sp. BH72] Length = 447 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +R + A V + +A + + +L+TD+ +P MDG+ Sbjct: 7 RVLYVEDDEAVRMAGCQTFALADLAVEGVDRAEAALPSLASDAPLVLVTDVRLPGMDGMG 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RRA E+DPDL V+ +TG VA+ ++ + KPF +V V R L Sbjct: 67 LLRRAMEIDPDLPVILVTGHGDVAMAVEAMRAGAYDFIEKPFAPEAMVEVVRRAL 121 >gi|94495299|ref|ZP_01301880.1| PAS/PAC Sensor Hybrid Histidine Kinase [Sphingomonas sp. SKA58] gi|94425565|gb|EAT10585.1| PAS/PAC Sensor Hybrid Histidine Kinase [Sphingomonas sp. SKA58] Length = 641 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 3/115 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ + +F + L G + V +N A ++E+ F L+ TDIVMP + GI+ Sbjct: 512 KVLLVEDNIQVLQFAEQLLDDLGCQTVCASNATEALALIQEQSFDLVFTDIVMPGLSGID 571 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR+ P L V+ TG + + + VLSKP+ L + +L+ Sbjct: 572 LARQLHIRAPGLPVLLATGHSDQLV---GEGEAHLSVLSKPYGAETLSAAIGQLI 623 >gi|328952169|ref|YP_004369503.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] gi|328452493|gb|AEB08322.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] Length = 128 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 61/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ + + L AL K GYEV + A +++E+ + +++TD+ M +DG+ Sbjct: 6 KIMVLDDEPIVCKRLQPALEKLGYEVETFTQSLEALHEIQEKTYDIIITDLKMKGIDGMR 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + A + P +V+ ITGFA + +S ++KPF L ++ V R Sbjct: 66 FLQEAKKQHPATEVIVITGFATLETAKESFQKGVFDFIAKPFKLSEIQEVVTR 118 >gi|206889241|ref|YP_002249148.1| two-component response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741179|gb|ACI20236.1| two-component response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 122 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++D R + K L K GYEV+ +G A K L+L DI +P++DG E Sbjct: 4 ILVVDDNEDSRELVKKILKKHGYEVIEAVDGEDAIAKALAYRPDLILMDISIPKIDGYEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTIK 121 RR E PD K I F A A+ D A +SKP ++R+ ++ L K Sbjct: 64 TRRLKER-PDFKDTPIIAFTAHAMRGDQEKALQAGCNGYISKPINVREFPEQIKIYLKEK 122 >gi|322433202|ref|YP_004210423.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] gi|321165594|gb|ADW71296.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] Length = 165 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ +R L + GY V +NG SA + + + +L+TD+ MPEMDG EL Sbjct: 25 ILLVDDNHLVRELTKTLLRQVGYAVAEASNGQSAIQQAQTRRYDMLITDLEMPEMDGFEL 84 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 AR T+ L V+ ++G + + L KP ++L+ ++ Sbjct: 85 ARHLTKDRAALPVLVLSGALPNVVPLQELQKRRWAFLPKPVDRKELIRTID 135 >gi|294636746|ref|ZP_06715086.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685] gi|291090047|gb|EFE22608.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685] Length = 263 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L AL G+E ++ ++GA A + + P ++L DI MP M+GI+ Sbjct: 6 RILIVDDEDNVRRMLTTALTLQGHETLTASHGAEALQRFTDTPPDVVLMDIRMPTMNGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P V+ +T +A V ++ + KPF L +L + R L ++ Sbjct: 66 ALKIMRTRRPRTPVILMTAYAEVETAIEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123 >gi|239907558|ref|YP_002954299.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239797424|dbj|BAH76413.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 344 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDG 61 +IL A+DD MR L + L K G+ V +C +G SA DK E+P LL+TD +MP +DG Sbjct: 2 RILTADDDPIMRARLCRYLQKNGHTVETCCDGLSAIDKFFSYEDPPELLITDWMMPNLDG 61 Query: 62 IELARRATE 70 IELA+R + Sbjct: 62 IELAKRVRQ 70 >gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ DM R + + L K GY V SC++G A + + + DI+MP +G E Sbjct: 2 RILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +R L + V+F+T ++A L KPF +L+ + R+LT K Sbjct: 62 VLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARI-RVLTRK 118 >gi|224368799|ref|YP_002602960.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223691515|gb|ACN14798.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 647 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 48/100 (48%) Query: 22 LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 L + GY V + G A R PF L+L DI MP MDG + + E++P+L V+ +T Sbjct: 23 LEREGYIVGTACCGRDALSLFRGSPFDLVLLDISMPGMDGFHVMEQLLEINPELLVIMVT 82 Query: 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 G+A V + L KPF DL+ V L K Sbjct: 83 GYATVESAVRALKQGACDYLKKPFEYADLIKTVKNALNKK 122 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL +D++++ + + GY V + NG A + V++ + L++ D+VMP M+G Sbjct: 529 VLLVDDEENVLEVCSEMIESLGYSVRAVGNGRDAIEFVKKNGKNIDLVILDMVMPGMNGF 588 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E +R + P+ KV+ +G++ + + + KP+ + L ++NR+ + Sbjct: 589 ETYQRIKTIQPETKVLLSSGYSKIEDLGEIFDSTLGNFIPKPYSMALLSEKINRVCAL 646 >gi|189425879|ref|YP_001953056.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189422138|gb|ACD96536.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 447 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + L + LG Y+V S +NGA A D ++LTD+ MP M G E Sbjct: 3 RVLVVDDDSLTCKILTRMLGPE-YQVHSFSNGADALDHFSRHGAEIVLTDLKMPRMGGQE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + +LDP + V ITG +++ + ++KPF D++ +NR L Sbjct: 62 LLEQLIKLDPQVIVFVITGHSSLESAVAAVKQGAYDFIAKPFDPDDVLLRINRAL 116 >gi|332366691|gb|EGJ44433.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 237 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ +G D R++ L++TDI+MP MD Sbjct: 6 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSIDLIITDIMMPNMD 65 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 66 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 118 Query: 114 VNRLL 118 VN +L Sbjct: 119 VNNIL 123 >gi|86357569|ref|YP_469461.1| nitrogen regulation (two-component response regulator) protein [Rhizobium etli CFN 42] gi|86281671|gb|ABC90734.1| nitrogen regulation (two-component response regulator) protein [Rhizobium etli CFN 42] Length = 483 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWISAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 118 >gi|94263458|ref|ZP_01287271.1| PAS [delta proteobacterium MLMS-1] gi|93456188|gb|EAT06327.1| PAS [delta proteobacterium MLMS-1] Length = 825 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ +I LGK GY V + +G A +R + L+L D+ MPE+DG++ Sbjct: 562 RILLAEDNPTNQQVVIAILGKNGYPVDAVADGRQALAALRRISYDLVLLDLRMPELDGLQ 621 Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR L+P + ++ +T A +S A LSKP R+L+ V + L Sbjct: 622 TARAIRSGNYGVLEPGVPIIALTAQAGERGRRESLAAGMNDCLSKPVAARELLRAVAQWL 681 >gi|28869904|ref|NP_792523.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853149|gb|AAO56218.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 676 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRALVSEVLSELGYAFIEASQATDAVPILESAQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P LKV+FITG+A A ++++KPF L ++V +++ Sbjct: 618 RQLAEIARQLRPALKVLFITGYAEHAAVRAGFLDTGMELITKPFAFDHLTSKVRQMI 674 >gi|73749292|ref|YP_308531.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73661008|emb|CAI83615.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 1092 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R + L + G+ V C++ A +K+ + ++L DI MP M GIE Sbjct: 972 KVLVVDDEPSIRLLIKTILTQNGHVVEECDDPRKALEKLMATAYDVILLDIRMPGMSGIE 1031 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R PD L V+FITG + + + +SKPF+ + L +V+ +L Sbjct: 1032 LYRNILTKRPDMALSVIFITGDTSDEATREYLSAHQTPYISKPFNRKTLETKVDEIL 1088 >gi|313575277|emb|CBI71212.1| hypothetical protein [uncultured bacterium] Length = 204 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 4/115 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED DD+RR L ALG G+ V ++ A +++ ++L+L+D MP G Sbjct: 41 RILIVEDQDDVRRMLATALGIEGHIVDEASSAAEGLRCLQQTRYNLVLSDYAMPGGTGTS 100 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +ATE +M T V +P+ +N +V+SKP L + + +V R+L Sbjct: 101 MLHQATEQG----LMNGTVALIVTAHPEVRELENIEVISKPLDLDNFLEQVRRIL 151 >gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] gi|300072667|gb|ADJ62066.1| multi-sensor hybrid histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 845 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MDGI 62 +L+ +D+ +R + + L AGY+V+ +G A ++ ++ LL+TD+ +P ++G Sbjct: 723 VLVVDDEASIRMLVAEILSDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGR 782 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A PDL V+FITG+A A + + + ++++KPF + L V +L Sbjct: 783 QVADAGRAARPDLHVLFITGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQSIL 838 >gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18] gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 234 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP MDG E Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E V+F+T A ++KPF L +++ + +L Sbjct: 66 VTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAIL 120 >gi|224535953|ref|ZP_03676492.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM 14838] gi|224522441|gb|EEF91546.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM 14838] Length = 1403 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED++++ + + K LG A Y V + NNG A D V +E L+++D++MPEMDGIE Sbjct: 1143 LLIVEDNEELLQLMTKLLG-ADYMVYTANNGKEAIDVVEQEEIDLIVSDVMMPEMDGIEF 1201 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNEVN 115 + +K F T V L N ++ +SKPF+L L ++ Sbjct: 1202 CQY-------IKNKFETSHIPVVLLTAKNKEEDRVEAYESGADGFISKPFNLSVLHARIS 1254 Query: 116 RLL 118 LL Sbjct: 1255 NLL 1257 >gi|224368210|ref|YP_002602373.1| sigma-54 dependent transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223690926|gb|ACN14209.1| sigma-54 dependent transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 455 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 64/119 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L + L + GY V+ ++ A D + ++ L+L+D+ MP MDGI Sbjct: 2 EKILIVDDEKNYPTILGEVLKEEGYTPVTASSALMALDILNDDCIDLVLSDVNMPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 EL + E+ P+ V+ +T + +V D+ + KPF LV + + ++I+ Sbjct: 62 ELLEKIKEITPNTPVIVMTAYGSVEKAVDAMHKGAYTYILKPFENDTLVAHIAKAISIQ 120 >gi|209549218|ref|YP_002281135.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534974|gb|ACI54909.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 483 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWISAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 118 >gi|116253632|ref|YP_769470.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258280|emb|CAK09382.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 444 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP +DG Sbjct: 3 DAKILLVDDEEELRRSTAQALELSGFSVETYSNGDHVLELIGYSFPGVVVSDIRMPGIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L ++ ELDP++ V+ +TG V L + + KPF L + R + Sbjct: 63 MTLMQKIRELDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAM 119 >gi|218508955|ref|ZP_03506833.1| probable two-component response regulator protein [Rhizobium etli Brasil 5] Length = 217 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP + Sbjct: 1 MNEAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ L ++ E+DP++ V+ +TG V L + + KPF L + R + Sbjct: 61 DGMTLMQKIREVDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTAEMLAGVIRRAM 119 >gi|170751602|ref|YP_001757862.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658124|gb|ACB27179.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 722 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ D+ F +AL + GY V +GA A ++ E+ F ++ +D+VMP M GI Sbjct: 599 VLLVEDNTDVGAFAAQALEELGYRTVWATDGAQALAQLAEDASQFDVVFSDVVMPGMTGI 658 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 EL + + DL V+ +G++ V N ++L KP+ + L Sbjct: 659 ELGQEIRKRHHDLPVVLTSGYSHVLAQ---NGTYGFELLHKPYSVEQL 703 >gi|148378297|ref|YP_001252838.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148287781|emb|CAL81847.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 225 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +++++ P + + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIERIKDVP-DIWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|91792680|ref|YP_562331.1| sigma-54 factor, interaction region [Shewanella denitrificans OS217] gi|91714682|gb|ABE54608.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella denitrificans OS217] Length = 446 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ V + A +++ F ++++D+ M + GI Sbjct: 5 KLLLVEDDHALREALLDTLQLAHYDCVDVASAEEAIMALKQTSFDMVISDVQMEGVGGIG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 L + + P L V+ +T +A + + NA K V L+KPF L+N+V+R L +K Sbjct: 65 LLKYLQQSHPKLPVLLMTAYATI--DSAVNAMKLGAVDYLAKPFAPEVLLNQVSRYLPLK 122 Query: 122 N 122 + Sbjct: 123 H 123 >gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator [Shewanella loihica PV-4] gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 238 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + +L K L +AGY + C NG Y E F L++ D+++P+M+G + Sbjct: 15 RILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGWQ 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 + + + D+ VMF+T A +L N ++ L KPF +L+ V LL Sbjct: 75 ILEKIRLNNSDIPVMFLT--AKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLL 129 >gi|317487013|ref|ZP_07945821.1| sigma-54 interaction domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921695|gb|EFV42973.1| sigma-54 interaction domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 455 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ +DD R L LG+ G V S +G A +V E PF ++L DI MP+MDG Sbjct: 6 SHTVLVVDDDPGHRGMLEALLGRWGLAVTSAGDGKEAVARVCERPFDVVLMDIRMPDMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + + +P + V+ +T ++AV Sbjct: 66 ITALKEIRKYNPAVPVVLMTAYSAV 90 >gi|197123493|ref|YP_002135444.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196173342|gb|ACG74315.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 138 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D++ +R L +AL GY ++ ++ SA D VR +P L + D VMP M G Sbjct: 7 HRILVVDDNEILRTLLAQALESGGYVALAADSAESALDVVRFDPPDLCVVDEVMPGMKGS 66 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLLT 119 +L R RA+ DP L+ M I G + VA + A V + KPF L+ V RLL Sbjct: 67 DLVRVLRASP-DPRLRGMPIVGLSGVAGGDRALLEAGADVAIRKPFAEAPLLELVRRLLA 125 >gi|241206149|ref|YP_002977245.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860039|gb|ACS57706.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 444 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP +DG Sbjct: 3 DAKILLVDDEEELRRSTAQALELSGFSVETYSNGDHVLELIGYSFPGVVVSDIRMPGIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L ++ ELDP++ V+ +TG V L + + KPF L + R + Sbjct: 63 MTLMQKIRELDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAM 119 >gi|126652580|ref|ZP_01724744.1| stage 0 sporulation protein F (two-component response regulator, sporulation initiation phosphotransferase F) [Bacillus sp. B14905] gi|126590571|gb|EAZ84688.1| stage 0 sporulation protein F (two-component response regulator, sporulation initiation phosphotransferase F) [Bacillus sp. B14905] Length = 119 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R L + L K GY NG A E+ +L D+ +P MDGI Sbjct: 2 KRLLIVDDQQGIRLLLNEVLKKEGYVTYLAANGLEALKYADEQDMDCVLLDMKIPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ RR E P L V +T + + + ++ + +KPF + ++ +EVN+ L + Sbjct: 62 EILRRLKEKFPKLPVFMMTAYGELDVVQEALNLGAIRYFTKPFDIFEVRDEVNKALQV 119 >gi|77459035|ref|YP_348541.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77383038|gb|ABA74551.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 998 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 ++ IL+ +D+ +R L + LG GY ++ + + ++ LL+TD+ +P M Sbjct: 875 SETILVVDDEPTVRALLTEVLGDLGYNLLEAGDSVAGLKVLQSNVRIDLLITDVGLPGGM 934 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA E+ P+L +FITG+A A+ +VL+KPF + LV V+ L+ Sbjct: 935 NGRQLADAGREIRPNLTTLFITGYAENAVIGAGQLGPGMQVLTKPFAVDTLVARVSELM 993 >gi|295104695|emb|CBL02239.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 225 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 64/114 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ +R + + L +GYEV +C +G +A + + E + L+L D+ +P++DG++ Sbjct: 2 RLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALETLAAERYDLVLLDLNLPKVDGMQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + D + V+ ++ + ++ + LSKPFHL +L V L Sbjct: 62 VLRSLRQHDLETCVLILSARSEISDKVEGLDAGANDYLSKPFHLAELEARVRSL 115 >gi|257484781|ref|ZP_05638822.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011167|gb|EGH91223.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 697 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 576 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKMLESDMRIDLLVTDVGLPGGMN 635 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 636 GRQLADAARTIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMDAFASRIYEMIER 695 Query: 121 KN 122 K+ Sbjct: 696 KD 697 >gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603] gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603] Length = 244 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 18 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIMMPQMDGIEL 77 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 78 CRRIRE-KHSLPIMFLSA 94 >gi|254453815|ref|ZP_05067252.1| sensor histidine kinase/response regulator [Octadecabacter antarcticus 238] gi|198268221|gb|EDY92491.1| sensor histidine kinase/response regulator [Octadecabacter antarcticus 238] Length = 778 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +LL ED+ +R F AL G+ V+ C A E L L D++MP DG Sbjct: 662 VLLVEDEAPVRAFASLALQLRGFTVLEADCAEAALTLLADLELVVDLFLNDVIMPGKDGP 721 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A PD KV+F++G+A A + + N+ L KPF L +L V+ L Sbjct: 722 TWVREALAARPDTKVVFVSGYAEEAFGEEQKSIPNSVFLPKPFSLNELTKTVHNQL 777 >gi|149922527|ref|ZP_01910958.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] gi|149816635|gb|EDM76129.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] Length = 739 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL +DD+ + L AL AG+ V C++ A A D +R+ P + L D+ MP G+ Sbjct: 618 VLLVDDDELIVESLGAALEFAGHRVHVCSDPACAVDVLRDHPGEIRVALVDLNMPGTTGL 677 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA + P L V +TG D A AKVL+KPF ++L E+ LL Sbjct: 678 ELAAQLRAQQPGLVVCMMTGDWTPLEEEDLRAAGIAKVLTKPFTSKELQRELGELL 733 >gi|86137475|ref|ZP_01056052.1| PAS sensor Signal Tranduction Histidine Kinase [Roseobacter sp. MED193] gi|85825810|gb|EAQ46008.1| PAS sensor Signal Tranduction Histidine Kinase [Roseobacter sp. MED193] Length = 861 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 +++LLAED++ +R L+ L +AGY V + +G A+ +P + LLLTDIVMP ++ Sbjct: 735 GRRLLLAEDEEGVRDTLVTILERAGYLVTATASGDEAFATFVADPTYDLLLTDIVMPGKL 794 Query: 60 DGIELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G LA+ DL V+F++G+A+ A ++ + P++ +++ KP DL+ +++ Sbjct: 795 QGTTLAKELRLRWTDLPVIFMSGYASEATVHGNGLRPEDIRLM-KPVRRADLLAALDK 851 >gi|116751159|ref|YP_847846.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] gi|116700223|gb|ABK19411.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] Length = 1268 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ +++ +D++ + + + L GY+V + + + R++P F +++TD MP M Sbjct: 1147 SESVIVVDDEEKLVIAIKRMLEYLGYKVTAMTSSVATLSLFRQQPEGFDVMITDYTMPGM 1206 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI+LAR + PD ++ TGF+ N+ +L KP L+ L V R+L Sbjct: 1207 TGIDLAREIIGIRPDFPIILCTGFSEEISEDAVNSIGIRALLMKPVTLQRLAGTVRRVLE 1266 Query: 120 I 120 I Sbjct: 1267 I 1267 >gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 226 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL +D+ D+ F+ L K GYEV + NGA A + L+L D++MP MD Sbjct: 5 MSHRILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQHRPHLILLDMMMPVMD 64 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G + R E DP L+ V+F++ L+KP ++ LV+ V + Sbjct: 65 GAQTCRAIRE-DPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAI 123 Query: 118 L 118 L Sbjct: 124 L 124 >gi|313673726|ref|YP_004051837.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940482|gb|ADR19674.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] Length = 121 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLA+D+ +R+ ++ L KAG++V+ +NG A + + +++ D++MPEMDGI Sbjct: 2 KVLLADDELRLRKVVVLHLKKAGFDVIEASNGKQAVELAKIHNPEIIVLDVMMPEMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 + + P+ I A A + D K+A + L+KPF ++L+ ++ L+ Sbjct: 62 ACKEFRK-SPEFAKTPIIMLTAKATSDDIEVGKSAGASEYLTKPFSPKELIEKIQELM 118 >gi|322419400|ref|YP_004198623.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125787|gb|ADW13347.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 432 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D R L +AL G+ V S NG A + + P L+++DI+MPEMDG E Sbjct: 2 KILIVDDNADDRVLLERALMNEGHSVSSATNGIRALESALDSPPDLIISDIMMPEMDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHL 107 L RR D +V FI A D + ++ L KP L Sbjct: 62 LCRRVKTDDRLRQVAFIFYTATYVEEKDEQLALSLGASRFLIKPLEL 108 >gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] Length = 242 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRIRE-KHSLPIMFLSA 92 >gi|256830431|ref|YP_003159159.1| Fis family two component sigma5-4 specific transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579607|gb|ACU90743.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfomicrobium baculatum DSM 4028] Length = 459 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 58/104 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R L AL + G++ V+ + GA A +++ F ++LTD++M MDG+ Sbjct: 15 RILVVDDEVISRDNLALALARQGHDTVTASGGAEALGLLQDSDFDMVLTDLMMEGMDGLA 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 L R PD++V+ ITG+ V ++ L+KP+ + Sbjct: 75 LLREVKSRHPDIEVVVITGYPTVDTAVEAMRAGAYDYLAKPYRI 118 >gi|39995407|ref|NP_951358.1| sigma-54 dependent DNA-binding response regulator, interruption-C [Geobacter sulfurreducens PCA] gi|39982170|gb|AAR33631.1| sigma-54 dependent DNA-binding response regulator, interruption-C [Geobacter sulfurreducens PCA] Length = 332 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+DD R F+ L GY+VV +G A +K+ E L++TD++MP ++G+E Sbjct: 5 RLLIADDDKKTRDFVTAFLKYKGYDVVQAFDGQDALEKLEVEDVHLVITDLMMPRVNGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + P V+ + F + + L KPF+L +L V R L Sbjct: 65 FVKKLKAMRPGTVVIAYSAFGNYEMTSNLLKAGVFFYLEKPFNLDELETHVKRGL 119 >gi|327192968|gb|EGE59883.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 444 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP + Sbjct: 1 MNEAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ L ++ E+DP++ V+ +TG V L + + KPF L + R + Sbjct: 61 DGMTLMQKIREVDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTAEMLAGVIRRAM 119 >gi|256545445|ref|ZP_05472807.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170] gi|256398841|gb|EEU12456.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170] Length = 224 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + K+L AGYEV S +G A + + E + L++ D+ +P MDG+E Sbjct: 2 KILIVEDEKILNNTINKSLKDAGYEVESAFDGFDAMEMIEIESYDLIVLDLNLPNMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + D + KV+ ++ + + + L KPFHL +L V R LT +N Sbjct: 62 ILKNLRKEDVETKVLILSARSQIQDKVEGLDAGANDFLQKPFHLDELKARV-RSLTRRN 119 >gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 859 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ DMR +L L AG+E+V NG A + + + +++++D++MPEMDG E Sbjct: 474 RVLVVEDNPDMRSYLADIL-SAGHEIVLATNGREALESIAAKRPNVIVSDVMMPEMDGFE 532 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 L RR + DP D+ V+ +T A+ A + +SKPF LR V RL Sbjct: 533 LVRR-LKGDPALRDIPVLLLTARASGAEAVGGLDVGADEYMSKPFDPLELRARVRAAERL 591 >gi|308273013|emb|CBX29617.1| hypothetical protein N47_J05980 [uncultured Desulfobacterium sp.] Length = 188 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 5/121 (4%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 LL DD+ L K L GY+V++ N A KV + LL+TDI MP+++G+ Sbjct: 64 LLVVDDNKTITGLCKIFLENMGYKVLTSNMPFDAIRLVKVYDGKIQLLITDIRMPQINGL 123 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ELA++ T + PD+K ++++G ++ L D N K L KPF L L V +L Sbjct: 124 ELAKQLTSIRPDMKCIYMSG-DSIELYSDQNMLNKEVNFLQKPFTLHHLAERVRNVLNHY 182 Query: 122 N 122 N Sbjct: 183 N 183 >gi|190893244|ref|YP_001979786.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698523|gb|ACE92608.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 444 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP + Sbjct: 1 MNEAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ L ++ E+DP++ V+ +TG V L + + KPF L + R + Sbjct: 61 DGMTLMQKIREVDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTAEMLAGVIRRAM 119 >gi|159044123|ref|YP_001532917.1| nitrogen assimilation regulator receiver protein [Dinoroseobacter shibae DFL 12] gi|157911883|gb|ABV93316.1| nitrogen assimilation regulator receiver protein [Dinoroseobacter shibae DFL 12] Length = 454 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLMTLMRWVEEGKGDLVISDVIMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E + TE P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLETLPKITEARPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRAARALEV 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|222054817|ref|YP_002537179.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221564106|gb|ACM20078.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 480 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++ MR L KAL K G+ V +G A ++ + L + DI MP + G+EL Sbjct: 6 ILVADDEESMRWVLSKALKKKGFNVDLAKDGDEALRNIKMHSYDLAILDIKMPGLSGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL---RDLVNEVNR 116 R EL DL V+ +T A++ ++ L+KPF L +V +VNR Sbjct: 66 LDRVRELKSDLLVVIMTAEASMKNAVEAMKRGAYDYLTKPFDLDVIDAIVEKVNR 120 >gi|86740853|ref|YP_481253.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3] gi|86567715|gb|ABD11524.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3] Length = 670 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMD 60 + IL+ EDD +R + L ++GY V + A A D+ + LLTD +MP M Sbjct: 550 KTILVVEDDAAVRAVTTRILVRSGYLVHEAGSPAEALDRFGPGTTRIDALLTDAIMPGMT 609 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L + P+L VM ++G+AA A + P L KPF R L++ + R L Sbjct: 610 GYQLIEQFRRTRPELPVMLMSGYAAGAEKSVAGFPPGVAHLQKPFTARALLDSLERTL 667 >gi|86160106|ref|YP_466891.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776617|gb|ABC83454.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 718 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL + D R + +L KAG+ V + NG A ++ P L+L+D MPEMDG Sbjct: 4 QHLLLVDGDPKSLRVMEVSLKKAGFTVTTAVNGRDALERCAVSPPDLILSDTKMPEMDGF 63 Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR E + +F+TG +V L+KP +++++V V LL Sbjct: 64 ELCRRLKEDERHRGTPFIFLTGQKSVEYKVKGLELGVEDYLTKPIYIKEIVTRVKILL 121 >gi|91976205|ref|YP_568864.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91682661|gb|ABE38963.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 132 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP--EMDG 61 IL+ EDD ++ +++AL + G+E V ++G A D + + + F L+TD+ + M G Sbjct: 7 ILVVEDDPMIQSIVLEALEEGGFEAVIASSGEEAVDLLTDGDRFRGLVTDVNLGRDRMPG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ RR E+DP V+++TG +A + N+ +L+KPF +V V +LL Sbjct: 67 WEVGRRVREIDPAFPVVYMTGDSAAEWA--ARGVPNSILLTKPFAPSQVVAAVTQLLNTP 124 Query: 122 N 122 N Sbjct: 125 N 125 >gi|119715476|ref|YP_922441.1| response regulator receiver [Nocardioides sp. JS614] gi|119536137|gb|ABL80754.1| response regulator receiver [Nocardioides sp. JS614] Length = 234 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ ED++D+ L++ L + GY+V ++G A D + P ++L D+ +P++D Sbjct: 5 MAQRVLVVEDEEDIAFPLVRTLEREGYDVSWVDSGQKALDTMATAPEVVIL-DLGLPDID 63 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ RRA E + +M +T A V L+ ++ L+KPF L +L V Sbjct: 64 GLEVCRRAREAGFEGAIMIVTARAGELDRVVGLDYGAD-----DYLAKPFGLAELQARVR 118 Query: 116 RLL 118 LL Sbjct: 119 ALL 121 >gi|189466788|ref|ZP_03015573.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM 17393] gi|189435052|gb|EDV04037.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM 17393] Length = 1339 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 9/121 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D++R +L L Y + C++G A D V+E +++++DI+MPEM G E Sbjct: 1078 KILIVEDNDELREYLRNTLSD-DYTIQVCSDGKQALDIVKEYMPNMIISDIMMPEMRGDE 1136 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + L D++ I ALN D N + K + KPF++ L + +L Sbjct: 1137 LCHK---LKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATIANIL 1193 Query: 119 T 119 T Sbjct: 1194 T 1194 >gi|298206890|ref|YP_003715069.1| rteB, two-component system response regulator [Croceibacter atlanticus HTCC2559] gi|83849524|gb|EAP87392.1| rteB, two-component system response regulator [Croceibacter atlanticus HTCC2559] Length = 478 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 59/111 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ EDD + L K L + G++V + NG A ++ E+ + LL+TD+ +P+ Sbjct: 22 MIQRILVVEDDVAFGKMLSKFLERKGFQVSTALNGNHARKQMEEQKYELLITDLKLPDDS 81 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+ L + D ++ +T +A V+ ++ +SKPF +L+ Sbjct: 82 GLNLLEYCQSVSADTNIILMTSYAEVSTAVEAIKKGALDYISKPFRPEELL 132 >gi|325978470|ref|YP_004288186.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178398|emb|CBZ48442.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 226 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ M R L AL GY+V S +G +A D E + +++ DI+MP GIE Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMANENAYDVMVMDIMMPVKSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + ++ +T A V D+ A L+KPF L++L+ Sbjct: 62 AVQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|293401478|ref|ZP_06645621.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305116|gb|EFE46362.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 225 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL EDD + L+ +L K GYEV+ C + +A + + F LLL D+ +P+ DG Sbjct: 2 KILFVEDDQAIALGLVYSLEKEGYEVIHCVSQKAALGLLEAQVFDLLLLDVSLPDGDGYT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + ++A L D+ V+F+T AL+ + N + ++KPF +++L++ + +L Sbjct: 62 ICKQAKHL-HDVPVIFLT-----ALDDEVNVVMGLDLGGDDYVTKPFRIKELLSRIKSVL 115 >gi|163850192|ref|YP_001638235.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163661797|gb|ABY29164.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 537 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + L GY + + A+ ++ + LL+TD+ +P M+ Sbjct: 408 ETVLIVDDEPTVRMLITDILKDLGYAAIEAGDSATGLKVLQSDVRIDLLVTDVGLPGGMN 467 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A PDLKV+FITG+A A+ + P VL+KPF + ++ + ++ Sbjct: 468 GRQMADAARNHRPDLKVLFITGYAENAILGNGMLPPGMAVLTKPFAMDNMAARIRSMI 525 >gi|745617|prf||2016360A spo0F gene Length = 122 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ +T + + + ++ +KPF + ++ V L + Sbjct: 61 GIEIFKACKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELAV 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|300785585|ref|YP_003765876.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795099|gb|ADJ45474.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 230 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 10/112 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LLA+DD +R L++AL GY V +G SA R PF +L+ D++MP +D Sbjct: 4 MPHRVLLADDDRAIRESLVRALDLEGYHVTEVPDGVSALATARRGPFDVLILDVMMPGVD 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHL 107 G+ + R RA E DP +M A PD A +A L KPF L Sbjct: 64 GLGVCRVLRA-EGDPTPILM----LTARVETPDRVAGLDAGADDYLPKPFEL 110 >gi|242278841|ref|YP_002990970.1| multi-sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121735|gb|ACS79431.1| multi-sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 656 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 56/103 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KI+L +D++ +RRFL L GY V + NG A + +++TDI MP MDG Sbjct: 10 DNKIMLVDDEEGLRRFLGLTLMDFGYTVETAENGVEALKLLENFHPDIIVTDIKMPRMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 I+L + E P ++V+ +TG + L +S A ++KP Sbjct: 70 IDLLKAIKEDHPHIEVIMLTGHGDLDLAIESLKNDAADFITKP 112 >gi|220929454|ref|YP_002506363.1| response regulator receiver protein [Clostridium cellulolyticum H10] gi|219999782|gb|ACL76383.1| response regulator receiver protein [Clostridium cellulolyticum H10] Length = 120 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D MR + L K GYE+ + +NG A +K +E L++ DI MPEM Sbjct: 1 MGKSILIVDDAAFMRMMIKDILSKNGYEIAADVDNGLKAIEKYKELTPDLVIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ R ++ D K++ + A+ +S + KPF +V V +++ Sbjct: 61 DGVTAVREIKKIHNDAKIIMCSAMGQQAMVIESIQAGARDFIVKPFQADRVVEAVKKVI 119 >gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 508 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ +D+ D+ L L AGY +G A + + E + L+L DI MP +DG Sbjct: 3 NLKILIVDDEADIALILKLQLEDAGYRTTRARDGLEALEMLAREHYDLILLDIRMPRLDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 IE+ R + P+L V+ +T + + ++ +SKPF D+ V R Sbjct: 63 IEVLERIRQEWPELVVVMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVER 117 >gi|304404258|ref|ZP_07385920.1| response regulator receiver protein [Paenibacillus curdlanolyticus YK9] gi|304347236|gb|EFM13068.1| response regulator receiver protein [Paenibacillus curdlanolyticus YK9] Length = 120 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K GYEVV +G+ A +K +E L DI MPEM Sbjct: 1 MANRILIVDDAAFMRMMIRDILTKNGYEVVGEAPDGSVAVEKFKELKPDLTTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + +LDP+ KV+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGIAALKEIKKLDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIKKTL 119 >gi|153870733|ref|ZP_02000072.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072802|gb|EDN69929.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 922 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL +D + R L L G+E+ +NG+ ++K+RE L++TD+VMP MDG Sbjct: 625 RKILLVDDYEGTRFLLTSILEPLGFEICEADNGSEGFEKIREFNPDLIITDLVMPGMDGF 684 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNRLL 118 EL R+ PD + + I +A L + SKPF + L+ + L Sbjct: 685 ELIRQIRN-SPDFQRLPILVLSASVLEGHQSGESTDFCNGFFSKPFRVEILLARLQEHL 742 >gi|148264973|ref|YP_001231679.1| response regulator receiver protein [Geobacter uraniireducens Rf4] gi|146398473|gb|ABQ27106.1| response regulator receiver protein [Geobacter uraniireducens Rf4] Length = 129 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 1/110 (0%) Query: 2 NQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 NQK IL+ +D+++ R L + L K G+ V S +NG A + +R++ +L++TDI MPEM+ Sbjct: 7 NQKRILVVDDEENARIGLSRLLAKEGFLVESVSNGFEALNYLRQQEVNLIVTDINMPEMN 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GI + + P V+ IT + V ++ + ++KP + +L Sbjct: 67 GITFLKELNKNFPKSNVIMITAYGGVESYIEAMNLGAFEYINKPVKIEEL 116 >gi|298487837|ref|ZP_07005877.1| Flagellar regulatory protein fleQ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157562|gb|EFH98642.1| Flagellar regulatory protein fleQ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 469 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 56/116 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD Sbjct: 1 MSINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183] gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183] Length = 1343 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 47/65 (72%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+AED+ D+R++L + LGK+ Y ++ +NG A ++E+ L+LTD++MP MDG+ Sbjct: 1097 ETILIAEDNTDIRQYLCEELGKS-YHILQASNGEEALAILKEQDTDLILTDVMMPVMDGL 1155 Query: 63 ELARR 67 +L ++ Sbjct: 1156 QLCKQ 1160 >gi|172056769|ref|YP_001813229.1| response regulator receiver protein [Exiguobacterium sibiricum 255-15] gi|171989290|gb|ACB60212.1| response regulator receiver protein [Exiguobacterium sibiricum 255-15] Length = 125 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+D +R ++ L GY + +G AY K+ + + L+L D +MP M GIE Sbjct: 3 RILLAEDEDVLRMLVLDTLEDEGYTIDEATDGDEAYQKIMSQHYDLVLLDYMMPGMTGIE 62 Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + PD LK+M +T + + + SKPF +L++ V +L+ Sbjct: 63 VIEKVRR-HPDKQNLKIMMLTAKSQQSDRERAEEIGANYFFSKPFSPLELIDVVGGILS 120 >gi|326797202|ref|YP_004315022.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547966|gb|ADZ93186.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 243 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +DD D+R L L + GY V++ NGA+ + +++ + L+L D+ + E DG Sbjct: 6 KKKLLVVDDDQDVRELLCDVLSQKGYAVITAENGAAMWPQLQTQTIDLVLMDLFLQEEDG 65 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++LAR+ + + +M +TG + L D + KPF++R+L + Sbjct: 66 LQLARQIRD-QYAMPIMMLTGKGDETDRILGLELAADD-------YMMKPFNIRELTARI 117 Query: 115 NRLL 118 LL Sbjct: 118 YALL 121 >gi|302037343|ref|YP_003797665.1| sigma-54 dependent transcriptional regulator [Candidatus Nitrospira defluvii] gi|300605407|emb|CBK41740.1| Sigma-54 dependent transcriptional regulator [Candidatus Nitrospira defluvii] Length = 448 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+A+DD + L GYEV++ ++G SA + + LL+ DI MP + Sbjct: 1 MKPIVLVADDDPSILEILKLGFRTKGYEVITASDGKSAIQAIEQNRPDLLVLDIEMPHLT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ R + P L V+ +T ++L ++ + ++KPF + L+ + + L Sbjct: 61 GIEVLRHLRKDWPTLPVVIMTAHGTISLAVEAMKEGATEFITKPFEMEQLLLVIQKAL 118 >gi|258592620|emb|CBE68929.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 146 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 2/112 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QK+L+ +DD R L + L AGY V + +G + + PF L+L D MP M G Sbjct: 10 GQKVLVVDDDSSFRELLTELLETAGYHVWTAQDGLAGLHALHNGPFDLILVDYRMPGMTG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD-SNAPKNAKVLSKPFHLRDLVN 112 +++A D ++ ITG L+P+ KVL KP + + +N Sbjct: 70 LDMAAHIRRSDTVTPIILITG-DYYMLDPEIVTRAGVTKVLPKPLKINEFLN 120 >gi|253698922|ref|YP_003020111.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251773772|gb|ACT16353.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 456 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 59/107 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L + L K GYEVV+ G A REE L+L D +P ++G+E Sbjct: 5 KIMVVDDEHLIRWSLEQNLKKQGYEVVTAGTGEDALRLAREEQPDLVLLDYHLPGINGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R ELD D+ V+ +T + ++ ++KPF+L ++ Sbjct: 65 VLQRIKELDEDILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEM 111 >gi|150018187|ref|YP_001310441.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904652|gb|ABR35485.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 218 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD+ + + +LG AGY+ +G A++ +++E F L+L DI++P +D Sbjct: 1 MKINILIVEDDEAISNLIRISLGMAGYQCKQTFDGMEAFNLIKQESFDLILMDIMLPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL +R L ++ V+F+T +A + KPF +L+ + +L Sbjct: 61 GFELMKRIKSL--NVPVIFLTAKNGLADKITGLKSGAEDYIVKPFETVELLARIEIVL 116 >gi|288905481|ref|YP_003430703.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831564|ref|ZP_07464722.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288732207|emb|CBI13772.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426349|gb|EFM29463.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 226 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ M R L AL GY+V S +G +A D E + +++ DI+MP GIE Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMANENAYDVMVMDIMMPVKSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + ++ +T A V D+ A L+KPF L++L+ Sbjct: 62 AVQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 235 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 10/115 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ EDD+ + L + L K GYEV + G + ++ F+L + DI++PEMD Sbjct: 1 MKEKLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDL 110 G L + ++ D+ +M ++ A D + K K+ ++KPF L ++ Sbjct: 61 GFTLCKNIRWINEDIPIMILS-----AKQTDMDKVKGLKLGADDYITKPFSLTEV 110 >gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704] gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704] Length = 225 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + + K L GYEV +C +G +A+D + E + L++ D+ +P MDG++ Sbjct: 2 RILVVEDEKTLCKTIAKGLRLDGYEVDTCFDGETAWDIILSESYDLIILDLNLPGMDGMK 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL---VNEVNRLLTI 120 + ++ D + ++ ++ + D L KPFH +L V + R + Sbjct: 62 VLQKIRMEDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLTRRCVV 121 Query: 121 KN 122 +N Sbjct: 122 QN 123 >gi|323138197|ref|ZP_08073269.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322396449|gb|EFX98978.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 816 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED+D +R +AL G+ V+ G A + V E L+++D+VMPEMDG Sbjct: 701 VLLVEDEDAVRAIGARALKSRGFTVLEAATGLEALELVEEVGGKIDLIVSDVVMPEMDGP 760 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNRLL 118 + + D KV+F++G+A A N P+ + L KPF ++ L+ V L Sbjct: 761 AMFAELRKRGVDAKVIFVSGYAEEAFA--KNLPEGDFGFLPKPFSIKQLIETVKSHL 815 >gi|149196434|ref|ZP_01873489.1| response regulator receiver domain [Lentisphaera araneosa HTCC2155] gi|149140695|gb|EDM29093.1| response regulator receiver domain [Lentisphaera araneosa HTCC2155] Length = 125 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ IL+ +D+ + L L K GY V + ++G A + V + + ++TDIVMP M+G Sbjct: 5 NKNILVIDDNPVVLEILKDCLNKEGYTVKTADDGLEAVNLVEDFVPAGIITDIVMPNMEG 64 Query: 62 IELARRATELDPDLKVMFITG--FAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 +E + +L P++K++ ITG +++ N ++ A + KPF +D+++E+++LL Sbjct: 65 LETITKMRQLFPEVKIIAITGKIYSSGFDNLETAKVFGADATVRKPFSCKDVIDELDKLL 124 >gi|87303165|ref|ZP_01085963.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87282332|gb|EAQ74292.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 233 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 55/108 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++L+ +DD +RRFL L GY V G A ++RE P+ L+L D ++P+ G Sbjct: 4 QHRVLIVDDDPALRRFLAGELAVEGYAVEMAGTGQQALIRLREAPWDLVLLDWILPDFTG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 +E+ R + + V+ +T AVA ++ L+KPF + + Sbjct: 64 VEVCLRLRASELNTPVLMLTARDAVAERVEALDAGADDYLTKPFSIEE 111 >gi|85711044|ref|ZP_01042104.1| Flagellar biosynthesis protein [Idiomarina baltica OS145] gi|85694957|gb|EAQ32895.1| Flagellar biosynthesis protein [Idiomarina baltica OS145] Length = 461 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 59/112 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R + L A Y+ + +NG SA ++++ L+++D+ MP M+G++L Sbjct: 6 ILIVEDDAALREAITDTLELAHYQCLHADNGESALLQLKKHRIDLVVSDVQMPGMNGLQL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R L D+ V+ +T +A V + LSKPF + +L V R Sbjct: 66 LRNIKHLKIDVPVVMMTAYAKVDDAVVAMREGAVDYLSKPFSIDELTQLVQR 117 >gi|150018635|ref|YP_001310889.1| two component, sigma54 specific, Fis family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905100|gb|ABR35933.1| two component, sigma54 specific, transcriptional regulator, Fis family [Clostridium beijerinckii NCIMB 8052] Length = 472 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 64/119 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ +R L AL K GYEV + NG A +E + + + DI MPE+DG++ Sbjct: 16 RVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMPEVDGLQ 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ P+L ++ +T F + ++ + KPF+L ++ V+R + ++ Sbjct: 76 AFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRAIRMQQ 134 >gi|170756225|ref|YP_001779949.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121437|gb|ACA45273.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 224 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +++++ P + + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIERIKDVP-DIWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|168698717|ref|ZP_02730994.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 526 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +LL ED++ +R+ + AL GY V + +A + LL+TD+VMP MDG E Sbjct: 391 VLLVEDEERVRKTVRSALEGWGYAVTEADRAETALALLATRRDIDLLVTDLVMPGMDGRE 450 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA RA P++ V+F++GF D A + L KPF DL+ R L Sbjct: 451 LATRARGERPEIAVVFMSGFVPDLRRTDGFA--DGVFLPKPFTPFDLIRCTERAL 503 >gi|163815763|ref|ZP_02207134.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759] gi|158448904|gb|EDP25899.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 61/114 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K L AGYEV +C +G A + + E + L++ D+ +P +DG+E Sbjct: 15 RLLIVEDEKQICDMVAKGLYDAGYEVDTCYDGEEALECILSEEYDLIVLDLNLPGVDGME 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + + + + KV+ ++ +A + + KPFHL++L + L Sbjct: 75 ILKELRQQNEETKVIILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 128 >gi|158520897|ref|YP_001528767.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158509723|gb|ABW66690.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 123 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q I++ +D +R+ + L AGY VV NG A +K+ P + + D+ MP +D Sbjct: 1 MEQTIMIVDDSTSVRKMVAFTLENAGYAVVEAENGRDALEKINGSPIHMFIVDLNMPYVD 60 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +D ++ +T + A + A ++KPF LV V +++ Sbjct: 61 GLELTRSVRAMDRFRFTPIVMLTTESMEAKKQEGRAAGATGWITKPFKPDQLVGVVKKVM 120 >gi|148264748|ref|YP_001231454.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146398248|gb|ABQ26881.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 776 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL +D++D+ L + GYEVV+ +G A + +P F L++TD MP+M Sbjct: 640 ERILFIDDEEDLVFAGKMMLERLGYEVVAKKDGGEALELFHTQPNDFDLIITDQTMPKMT 699 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-------KPFHLRDLVNE 113 G EL R + PD+ V+ TGF A + A K +V + KP ++ Sbjct: 700 GTELTREILRIRPDIPVILCTGFGHAARD---FATKEGQVAAGIRELALKPLDRAEMAKT 756 Query: 114 VNRLL 118 + R+L Sbjct: 757 IRRVL 761 >gi|306833709|ref|ZP_07466836.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424479|gb|EFM27618.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 226 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ M R L AL GY+V S +G +A D E + +++ DI+MP GIE Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMATENAYDVMVMDIMMPVKSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + ++ +T A V D+ A L+KPF L++L+ Sbjct: 62 AVQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|150025465|ref|YP_001296291.1| two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] gi|149772006|emb|CAL43482.1| Two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] Length = 227 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 10/115 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL EDD+ + L + Y + CN+G A D + PF + + DI+MP++DG Sbjct: 3 NFKILYTEDDETLAFLTKDNLEQNNYNITHCNDGQIALDTFKNNPFDICILDIMMPKIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLV 111 ELA +L+ ++ ++F+ +A L D K K+ L KPF + +L+ Sbjct: 63 FELATAIRKLNTNIPILFL---SAKTLKEDR--IKGLKLGADDYLIKPFSIEELL 112 >gi|134300221|ref|YP_001113717.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] gi|134052921|gb|ABO50892.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] Length = 122 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR + L K GYEVV NGA A +E L+ DI MPEM Sbjct: 1 MGKRILIVDDAAFMRMMIKNILTKNGYEVVGEAENGAVALQMFKELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI+ + +DP ++ + A+ ++ + KPF ++ + R+L+ Sbjct: 61 DGIQGVKAIRAVDPGANIIMCSAMGQQAMVMEAIQAGAKDFIVKPFQQDRILQAIERVLS 120 >gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ +R + L + G+ VV +G A D V EP L + D++MPE+DG EL Sbjct: 4 ILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPVQLAVIDVMMPEVDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E + D+ ++ +T AL S+ + ++ L KPF +LV V LL Sbjct: 64 TRWLRE-ERDVPILLLT-----ALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALL 116 >gi|170744483|ref|YP_001773138.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168198757|gb|ACA20704.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 830 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +GAS +R L++TD+ +P M+ Sbjct: 709 ETVLVVDDEPSVRMLVTEVLEDLGYAAIEAADGASGLRLLRSSARIDLVVTDVGLPGGMN 768 Query: 61 GIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A PDLKV+F+TG+A ALN AP A VL+KPF L L + ++ Sbjct: 769 GRQMAEAARVTRPDLKVLFVTGYAENAALNHGHLAPGMA-VLTKPFALDALAIRIRTMI 826 >gi|149202697|ref|ZP_01879669.1| multi-sensor hybrid histidine kinase [Roseovarius sp. TM1035] gi|149143979|gb|EDM32013.1| multi-sensor hybrid histidine kinase [Roseovarius sp. TM1035] Length = 769 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 +LL ED+ +R F +AL G+ V+ + A + + E+P + +TD+VMP +DG Sbjct: 653 VLLVEDEAPVRAFASRALQLRGFTVLEAESAEDALE-ILEDPDLQVDVFVTDVVMPGIDG 711 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RRA P +V+F++G+A + L KPF L +L V R L Sbjct: 712 PGWVRRALTTRPAARVVFMSGYAEETFGDRQACIPQSVFLPKPFSLNELTETVQRQL 768 >gi|197116683|ref|YP_002137110.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086043|gb|ACH37314.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 456 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 59/107 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L + L K GYEVV+ G A REE L+L D +P ++G+E Sbjct: 5 KIMVVDDEHLIRWSLEQNLKKQGYEVVTAGTGEDALRLAREEQPDLVLLDYHLPGINGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R ELD D+ V+ +T + ++ ++KPF+L ++ Sbjct: 65 VLQRIKELDEDILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEM 111 >gi|125717941|ref|YP_001035074.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125497858|gb|ABN44524.1| Two-component response transcriptional regulator (CheY-like receiver domain and a winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] Length = 232 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ +G D R++ L++TDI+MP MD Sbjct: 1 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 61 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|88800451|ref|ZP_01116015.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Reinekea sp. MED297] gi|88776781|gb|EAR07992.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Reinekea sp. MED297] Length = 468 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD ++R ++ + GY V ++G +A K++E F +++D+ MP M G +L Sbjct: 3 ILIVEDDANLREAVVDTIALHGYRVTEADSGETAVLKLKESNFDFIVSDVSMPGMSGHDL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + P + ++ +T +AAV D+ L KPF L+ +++ Sbjct: 63 LDYVRQNHPQIPMLLVTAYAAVDRAVDAMQKGAVDYLVKPFTPTQLIELIDQ 114 >gi|116750232|ref|YP_846919.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699296|gb|ABK18484.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 450 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R L++ K+GYE S + G SA + V + + L+ DI MP++ G E Sbjct: 6 KVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMPDVSGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R P V+ IT + +V D+ + L KPF +L + RLL K Sbjct: 66 VLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQK 123 >gi|332704432|ref|ZP_08424520.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] gi|332554581|gb|EGJ51625.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] Length = 146 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +D+ D L+K LGK G + + +G +A D + + P +++ D+ MP MDGI+ Sbjct: 6 KVLLVDDEADFADTLVKRLGKRGMDAAARYSGGTALDYLEDHPVDVVVLDVKMPGMDGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R+ E P ++V+ +TG A++ + + L KP + DL ++ L K Sbjct: 66 CLRKIKERYPLVEVVLLTGHASLDVAINGMELGAFDYLMKPADMDDLRYKIEDALNRKR 124 >gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 40/63 (63%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +DD + FL L K GYEV NG A +K++ E F L+L DI+MP++D Sbjct: 1 MNYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIMMPKID 60 Query: 61 GIE 63 G E Sbjct: 61 GFE 63 >gi|150391003|ref|YP_001321052.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950865|gb|ABR49393.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus metalliredigens QYMF] Length = 449 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +MR + KAL Y+V NG +K +E L+L D+ MP MDG+E Sbjct: 3 KILIVDDEKNMRWAMKKALKTEDYQVFEAANGQEGVEKFQELQPDLVLLDLKMPVMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++ +D + V+ IT ++ +SKPF + +L +++ L +K Sbjct: 63 ALQKMKGIDEHIPVIMITAHGTTESAVEAMKLGAIDYISKPFDIEELKIVIHKALQVK 120 >gi|116749523|ref|YP_846210.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698587|gb|ABK17775.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 462 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ MR FL L K GY+V G A D ++ E + L++TDI M ++G++ Sbjct: 7 KILVVDDEASMREFLEIMLQKQGYQVTCAETGKEALDFIQNETYDLVITDIRMKPINGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ++ + P V+ I+ +A+ + L KPF++ ++ + L K Sbjct: 67 VLKQCKVISPSTVVIIISAYASAETAVAAMQEGAYDYLPKPFNVDEIRTVIENALRSK 124 >gi|239908023|ref|YP_002954764.1| putative NtrC family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239797889|dbj|BAH76878.1| putative NtrC family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 463 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD R L +AL ++ V + + E F L+LTD+++P MD Sbjct: 1 MPARILVIDDDAAFREMLCEALAAKDFDPVGVGTAEEGVARAKAETFDLVLTDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE + E PD +V+ ++G++A D+ +KPF L ++ + R L Sbjct: 61 GIEGLSKLKEAAPDSEVIVMSGYSAREKALDAVRLGAYDFFAKPFSLAEMEVVIRRAL 118 >gi|284037922|ref|YP_003387852.1| response regulator receiver protein [Spirosoma linguale DSM 74] gi|283817215|gb|ADB39053.1| response regulator receiver protein [Spirosoma linguale DSM 74] Length = 524 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL A+D+ D+ + I L GY+V S N+GA A D+V + + ++ D +MP M G Sbjct: 3 NYSILWADDEIDLLKPHILFLKNKGYDVTSVNSGADALDQVEQTNYDVVFLDEMMPGMTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E + ++ P+L V+ IT + ++ K A L KP + ++ V ++L K Sbjct: 63 LETLSQIKQIRPNLPVVMITKSEEEHIMEEAIGSKIADYLIKPLNPNQILLSVKKILDNK 122 >gi|149923945|ref|ZP_01912331.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Plesiocystis pacifica SIR-1] gi|149815177|gb|EDM74726.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Plesiocystis pacifica SIR-1] Length = 471 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 56/101 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ MR L L +AG+EVVS +G A + E ++L+D+ MP + G+ L Sbjct: 8 VLVVDDEEPMRHMLELLLRRAGFEVVSVESGEQALAHLAEHSVDVVLSDVRMPGLGGLGL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 A R + P++ ++ ++ F V L ++ +SKPF Sbjct: 68 AERMSAEHPEVTLVMMSAFGTVDLALEAMQRGAYDYVSKPF 108 >gi|254226366|ref|ZP_04919955.1| two-component response regulator [Vibrio cholerae V51] gi|125621116|gb|EAZ49461.1| two-component response regulator [Vibrio cholerae V51] Length = 419 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|117620336|ref|YP_857562.1| two-component hybrid sensor and regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561743|gb|ABK38691.1| two-component hybrid sensor and regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 376 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D R L L +AGY V +G A D E P L+L DI MP MDG E Sbjct: 3 EILIVDDMASNRYILRSLLEEAGYRVREATDGLQAVDTATEFPPDLVLMDINMPVMDGYE 62 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR +L L V+FI+ + + + +SKPFH +++ V L +K Sbjct: 63 ACRRIKQLPGQWCLPVLFISTNSGIGALEQAFQAGGCDYVSKPFHQLEVLARVQNQLRLK 122 >gi|87306503|ref|ZP_01088650.1| two-component system sensory/regulatory protein-like (Che family protein) [Blastopirellula marina DSM 3645] gi|87290682|gb|EAQ82569.1| two-component system sensory/regulatory protein-like (Che family protein) [Blastopirellula marina DSM 3645] Length = 893 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 4/85 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 +LLAED D RR + +L AG++VV +G +A+D ++ E F L++TDI MP M+G Sbjct: 752 VLLAEDSDFFRRQVKSSLEDAGFQVVDAEDGQAAWDTLQRGEFAFDLIVTDIEMPRMNGF 811 Query: 63 ELAR--RATELDPDLKVMFITGFAA 85 E +R R +E D+ ++ +T A+ Sbjct: 812 EFSRKVRNSEKWKDMPIIALTSLAS 836 >gi|89895726|ref|YP_519213.1| hypothetical protein DSY2980 [Desulfitobacterium hafniense Y51] gi|219670149|ref|YP_002460584.1| response regulator receiver protein [Desulfitobacterium hafniense DCB-2] gi|89335174|dbj|BAE84769.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540409|gb|ACL22148.1| response regulator receiver protein [Desulfitobacterium hafniense DCB-2] Length = 120 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +L+ +D MR + L K G+ VV NGA A DK E L++ DI MPEM Sbjct: 1 MGANVLIVDDAAFMRMMVKDILTKNGFTVVGEAENGAVAVDKFVELTPDLVIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG++ R + DP K++ + A+ D+ + KPF +V V + L Sbjct: 61 DGLQAVREIRKKDPQAKIIMCSAMGQQAMVIDAIQSGAKDFIVKPFQADRVVEAVKKAL 119 >gi|325925085|ref|ZP_08186505.1| PAS domain S-box [Xanthomonas perforans 91-118] gi|325544501|gb|EGD15864.1| PAS domain S-box [Xanthomonas perforans 91-118] Length = 540 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 N+ IL+ ED D+ L AGY V+S ++G A + + + L TD++MP M Sbjct: 415 NETILVVEDKQDVAVVARMFLENAGYRVLSASSGREAVEILEKTLQVDALFTDLIMPGGM 474 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A ++ V+ KP+ ++L+ + LL Sbjct: 475 NGVMLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVDKPYTQKELLKRIRMLL 533 >gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC 10782] gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC 10782] Length = 228 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVN 115 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ ++ Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARIS 114 >gi|323529678|ref|YP_004231830.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323386680|gb|ADX58770.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 781 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD + + + L G++V + A + E F +L+TD+ MP M G+E Sbjct: 669 RLLLVDDDVETSEAVGELLKLVGHDVTITGSPQEALRLLEAERFDVLITDLSMPAMPGLE 728 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LA+RAT+L P L+V+F +G A+ P L KP+ + +L Sbjct: 729 LAQRATQLRPTLRVIFASGHEMPAVKA---LPFRWGALRKPYSIDEL 772 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD +++ ++ L GY V+ N+ A VR LL TD+VMP + Sbjct: 527 ETILVVEDDKEVQSTVVDTLSGLGYSVLKANDAEQALAVVRSGVHIDLLFTDVVMPGPLR 586 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +A +L P LKV+F +G+ A+ ++LSKP+ L ++ ++L + Sbjct: 587 SPAMVAQAVQLLPRLKVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREQLAYKIRQILGV 646 >gi|224369676|ref|YP_002603840.1| two-component response receiver and regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692393|gb|ACN15676.1| two-component response receiver and regulator protein [Desulfobacterium autotrophicum HRM2] Length = 117 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 6/116 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD + ++LI GYE S N+GA A++ +++E L+ D+ MP+ Sbjct: 1 MTKKILVVDDDPVIVKYLINIFNDNGYETCSANDGAEAFEVLQQENPDLITLDLEMPKEW 60 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G + RR + E D+ V+ I+G A+ L+ D K L+KPF L+ V Sbjct: 61 GPKFFRRLSKHEAYKDIPVIVISGLASRHLSID----KAITWLAKPFDPEKLIGIV 112 >gi|222054697|ref|YP_002537059.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221563986|gb|ACM19958.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 467 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 4/118 (3%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ +D+ +R + + L + + V + NG A +K++E F LL+TD+ MP M G+E+ Sbjct: 1 MVVDDEAIIREGINRILSGSEFFVETYANGYLALEKLQESSFDLLITDLKMPGMGGMEVL 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 + L P++ V+ ITG+++V + A KN V +SKPF +++ +VN L K Sbjct: 61 KSIRVLQPEMPVIIITGYSSV--DTAVEAMKNGAVDYVSKPFTPDEILAKVNSALEKK 116 >gi|254521143|ref|ZP_05133198.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219718734|gb|EED37259.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 119 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDG 61 ++L+ ED D+R + AL G EV + +G A + ++ E F ++ +DI MP M G Sbjct: 7 RVLMVEDQTDLREMIGLALRDFGIEVATTADGHEAAELLKGEARFDVVFSDISMPNGMSG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ P +++ +G+A L P P+ + L KP+ LR LV Sbjct: 67 IELSEHVAREQPQARMILSSGYARSQLPP---LPEKVEFLPKPYRLRQLVQ 114 >gi|170748607|ref|YP_001754867.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655129|gb|ACB24184.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 628 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R L G+ +G +A +++ + +++ D+ MP M GI+ Sbjct: 511 RVLIVDDDPQVRHVTASFLTAFGHSTTEAGDGEAALRLLQDGRYDIVVADLAMPGMSGID 570 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA + DP L V+ +TG A PD + VL+KPF DL V LL Sbjct: 571 LAAEIRDRDPGLPVLILTGHAEAMQIPD-----DLPVLTKPFRSADLAARVATLL 620 >gi|220918292|ref|YP_002493596.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956146|gb|ACL66530.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 138 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D++ +R L +AL GY ++ ++ SA D VR +P L + D VMP M G Sbjct: 7 HRILVVDDNEILRTLLAQALESGGYVALAADSAESALDVVRFDPPDLCVVDEVMPGMKGS 66 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLLT 119 +L R RA+ DP L+ M I G + VA + A V + KPF L+ V RLL Sbjct: 67 DLIRVLRASP-DPRLRSMPIVGLSGVAGGDRALLEAGADVAIRKPFAEAPLLELVRRLLA 125 >gi|166032342|ref|ZP_02235171.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC 27755] gi|166028065|gb|EDR46822.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC 27755] Length = 859 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 13/122 (10%) Query: 5 ILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPE 58 +LL ED++ ++ R+L++ +AG +V++ NG A D + RE+ L+L DI+MP Sbjct: 737 VLLVEDNELNLEIARYLLE---EAGVQVIAAKNGQEALDIFEQSREQEIDLILMDIMMPV 793 Query: 59 MDGIELARRA-TELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 MDG+E RR T P + I +A A D KNA + L+KPF + ++ + Sbjct: 794 MDGLEATRRIRTCTHPRGATVPIIAISANAFADDIQKAKNAGMNEHLAKPFEMEKVLRAI 853 Query: 115 NR 116 +R Sbjct: 854 SR 855 >gi|149908459|ref|ZP_01897122.1| FlrC; two-component response regulator [Moritella sp. PE36] gi|149808622|gb|EDM68557.1| FlrC; two-component response regulator [Moritella sp. PE36] Length = 463 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +IL+ EDD +R L+ L AGYE ++G SA + ++ + ++++D+ M M G Sbjct: 3 HSQILVVEDDLGLREALVDTLLMAGYECDEVDSGESALIALGKKTYDMVVSDVQMGGMTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNR 116 + L + PDL V+ +T +A V + A +N V + KPF L+N+V R Sbjct: 63 LTLLHNIKQKYPDLPVLLMTAYARV--DDAVTAMRNGAVDYIGKPFSPEVLINQVGR 117 >gi|71733300|ref|YP_275543.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553853|gb|AAZ33064.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325112|gb|EFW81181.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. glycinea str. B076] gi|320329371|gb|EFW85364.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. glycinea str. race 4] gi|330889063|gb|EGH21724.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. mori str. 301020] gi|330986487|gb|EGH84590.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 471 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 56/116 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD Sbjct: 1 MSINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|89093820|ref|ZP_01166766.1| C4-dicarboxylate transport transcriptional regulatory protein [Oceanospirillum sp. MED92] gi|89081950|gb|EAR61176.1| C4-dicarboxylate transport transcriptional regulatory protein [Oceanospirillum sp. MED92] Length = 454 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++ +R +AL AGYEV S + A D + +L+TDI +P MDG+EL Sbjct: 9 ILLVDDEEHIRLAASQALELAGYEVTSVDTAEKAVDLINGGWPGILVTDINLPGMDGLEL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + D L V+ ITG +++ + + KPF +++ V R + +N Sbjct: 69 MKWVVAHDSTLPVILITGHGDISMAVGAMRDGAYDFIEKPFSSELMLDVVRRAVEKRN 126 >gi|163847148|ref|YP_001635192.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524985|ref|YP_002569456.1| GAF sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668437|gb|ABY34803.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448864|gb|ACM53130.1| GAF sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1006 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 63/107 (58%), Gaps = 2/107 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R L++ L + G++V S +G SA + + L+ TD+ MP M G E+ Sbjct: 889 ILVIDDEEAVRNVLVRMLQRLGHQVDSAGSGESALSQFVAGRYDLVCTDLGMPGMSGWEV 948 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDL 110 A + +DP +V+ +TG++ ++PD + +L+KPF ++ + Sbjct: 949 AAQVRRVDPAARVVLVTGWSE-QIDPDEARGRGIDAILAKPFTIQQV 994 >gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLLT 119 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + + + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARIRAIFS 118 >gi|261837494|gb|ACX97260.1| response regulator [Helicobacter pylori 51] Length = 213 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV +G AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVSCAFSGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697] gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697] Length = 1357 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ D+R++L + LGK Y ++ NG A V+E+ L+LTD++MP MDG+ Sbjct: 1111 ESILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIVKEQEVGLILTDVMMPVMDGL 1169 Query: 63 ELARR 67 +L ++ Sbjct: 1170 QLCKQ 1174 >gi|206891080|ref|YP_002248567.1| FrgC [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743018|gb|ACI22075.1| FrgC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 139 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +KIL+ +D+ DM + L L K YE+ + NN A + ++ F L++TD+ MP + Sbjct: 1 MAEKILIVDDEPDMLKLLSMILREKTPYEITTTNNPIEAVELAKKGDFDLVITDLKMPGL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG++L + D D+ V+ IT + + ++ ++KPF ++ + + L Sbjct: 61 DGLQLLEEVKKRDEDVPVIIITAYGTIDAATEAIEKGGFDFITKPFKKEQILFTIEKAL 119 >gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 226 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GYE+V NNG + + + L+L DI++PE++G+E Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR D+ ++ +T AV ++KPF + +L+ + R++ Sbjct: 63 VLRRLRR-TSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L] gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L] Length = 232 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|331014366|gb|EGH94422.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 676 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRALVSEVLSELGYAFIEAGQATDAVPILESAQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P LKV+FITG+A A ++++KPF L ++V +++ Sbjct: 618 RQLAEIARQLRPALKVLFITGYAEHAAVRAGFLDTGMELITKPFAFDHLTSKVRQMI 674 >gi|289433253|ref|YP_003463126.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946973|gb|ADC74670.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 1092 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R + L + G+ V C++ A +K+ + ++L DI MP M GIE Sbjct: 972 KVLVVDDEPSIRLLIKTILTQNGHIVEECDDPRKALEKLMATAYDVILLDIRMPGMSGIE 1031 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R PD L V+FITG + + + +SKPF+ + L +V+ +L Sbjct: 1032 LYRNILTKRPDMALSVIFITGDTSDEATREYLSAHQTPYISKPFNRKTLETKVDEIL 1088 >gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1622 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVM 56 N ++L+ +D+ L + L G+E + GA A D +R+ EP+ LLL D M Sbjct: 1116 NGRVLIVDDNHTAAAVLSEMLRSMGFETRESHAGAQALDMLRDAAADGEPYGLLLIDWRM 1175 Query: 57 PEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 P MDGIELARR E LD +++ +T + + P + VL KP Sbjct: 1176 PGMDGIELARRIHELGLDQAPQMLMVTAYGRDEIMPAAREQGIETVLVKP 1225 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED++ + ++ L AG+ V +G +A D V + ++L D+ MP MDG E Sbjct: 1267 VLLVEDNELNQLVAVELLRGAGFIVDVAAHGQAALDCVAHTEYDVVLMDMQMPVMDG-ET 1325 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD 91 A R DP + I A A+ D Sbjct: 1326 ATRRLRADPRHARLPIIAMTANAMEAD 1352 >gi|94263816|ref|ZP_01287622.1| PAS [delta proteobacterium MLMS-1] gi|93455827|gb|EAT05994.1| PAS [delta proteobacterium MLMS-1] Length = 1047 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +LL ED++ + K LGK GY V++ + A + LL+TD+VM E++ Sbjct: 924 EMVLLVEDEEAILAMADKMLGKLGYRVLTADRPEQALELAAAHVGVIDLLITDVVMTELN 983 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA + P LKV++I+G+ A + + ++KPF ++L V ++L Sbjct: 984 GRELAEQLLARRPGLKVLYISGYPANIIAHRGVLDEGVNFMAKPFSEQELALRVRQIL 1041 >gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 225 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D+D++ + L + ++V NG A + ++ + SL++ DI+MPEMD Sbjct: 1 MNEKILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + D D ++F++ ++V + L+KPF +LV V LL Sbjct: 61 GIEVLKTIGN-DRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALL 117 >gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI] gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + V L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + ++A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRSADDYIVKPFAIEELLARI 113 >gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 6/123 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GYE++ NNG + + + L+L DI++PE++G+E Sbjct: 3 KILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR D+ V+ +T AV ++KPF + +L+ + R++ Sbjct: 63 VLRRIRR-SSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 119 TIK 121 T+K Sbjct: 122 TVK 124 >gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321] gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321] Length = 232 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + + + L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKAIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L PD +FIT ++L D ++KPF R+LV Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 V+ +L Sbjct: 114 VHNIL 118 >gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 242 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 16/124 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD + + + L AG + +C++G A D +EPF L+L DI+MP MDG E Sbjct: 12 KILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLIDIMMPGMDGFE 71 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN- 115 L ++ D ++F+T ++L D + KPF R+LV + Sbjct: 72 LCANLRQV-TDAPIVFLTAKDGESDLVVGLSLGADD-------YIVKPFRPRELVARIRA 123 Query: 116 RLLT 119 RL T Sbjct: 124 RLRT 127 >gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 226 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GYE+V NNG + + + L+L DI++PE++G+E Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR D+ ++ +T AV ++KPF + +L+ + R++ Sbjct: 63 VLRRLRR-TSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|324992962|gb|EGC24882.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995730|gb|EGC27642.1| DNA-binding response regulator [Streptococcus sanguinis SK678] Length = 237 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ +G D R++ L++TDI+MP MD Sbjct: 6 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 65 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 66 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 118 Query: 114 VNRLL 118 VN +L Sbjct: 119 VNNIL 123 >gi|300871520|ref|YP_003786393.1| response regulatory protein AtoC [Brachyspira pilosicoli 95/1000] gi|300689221|gb|ADK31892.1| response regulatory protein, AtoC [Brachyspira pilosicoli 95/1000] Length = 446 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++R + K+L GYEVV+ NG + V + L++TD+ MPE G E Sbjct: 3 KILVIDDEKNIRDGIKKSLEYEGYEVVTAENGEKGIETVYKGGIDLVITDLKMPEKTGEE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E D + V+ +TG + D ++KPF++ ++ + R L KN Sbjct: 63 FLHDILEFDKHIPVIILTGHGNIETAVDMMRLGAYDFMTKPFNIDKMLLIIARALENKN 121 >gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1624 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVM 56 N ++L+ +D+ L + L G+E + GA A D +R+ EP+ LLL D M Sbjct: 1118 NGRVLIVDDNHTAAAVLSEMLRNMGFETRESHAGAQALDMLRDAAADGEPYGLLLIDWRM 1177 Query: 57 PEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 P MDGIELARR E LD +++ +T + + P + VL KP Sbjct: 1178 PGMDGIELARRIHELGLDQAPQMLMVTAYGRDEIMPAAREQGIETVLVKP 1227 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED++ + ++ L AG+ V +G +A D V + ++L D+ MP MDG E Sbjct: 1269 VLLVEDNELNQLVAVELLRGAGFIVDVAAHGQAALDCVAHTEYDVVLMDMQMPVMDG-ET 1327 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD 91 A R DP + I A A+ D Sbjct: 1328 ATRRLRTDPRHARLPIIAMTANAMEAD 1354 >gi|167752240|ref|ZP_02424367.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216] gi|167660481|gb|EDS04611.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216] Length = 389 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 12/126 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ +D L LGKAGY +V+ G A +KV E L+L DI+MP+M+G Sbjct: 10 NYKILVVDDIATNVLLLKTILGKAGYRIVTATGGREALEKVESESPDLILLDIMMPDMNG 69 Query: 62 IELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 E+ R A E + V+F++ AL+ N K K+ +SKPF+ +L+ V Sbjct: 70 YEVIERLKADERFCRIPVIFLS-----ALHDSENIVKGFKMGASDYVSKPFNHEELITRV 124 Query: 115 NRLLTI 120 + I Sbjct: 125 AHHMFI 130 >gi|146282298|ref|YP_001172451.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145570503|gb|ABP79609.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 817 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDGI 62 IL+ +D+ +R L LG GY ++ + + ++ + LL+TD+ +P M+G Sbjct: 700 ILIVDDEPTVRLLLTDVLGDLGYTLIEAADSLTGLKLLQSDVDIDLLITDVGLPGGMNGR 759 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A E+ P LK +FITG+A A +S+ +VL+KPF + L V LL Sbjct: 760 QMADAGREVRPGLKTLFITGYAESAALGNSSLGAGMQVLTKPFSIDILATRVLELL 815 >gi|148557326|ref|YP_001264908.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148502516|gb|ABQ70770.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 630 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 47/80 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+D++R+F L + +V + +A D + F L+ +DIVMP M G++L Sbjct: 518 VLLVEDNDNVRQFARSMLHELRADVTDVESAEAALDLLGRHHFDLVFSDIVMPGMSGLDL 577 Query: 65 ARRATELDPDLKVMFITGFA 84 ARR PD +V+ TG++ Sbjct: 578 ARRLRSTAPDQRVLLATGYS 597 >gi|148262307|ref|YP_001229013.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395807|gb|ABQ24440.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 379 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R KAL GY V+ +G A + ++LTD++MP +DGIEL Sbjct: 21 ILIVDDEAIIRDLCRKAL--KGYRVLEAGDGEEALQVFEQGGIDVILTDVMMPNLDGIEL 78 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E++P L V+ +TG+A + ++ ++KP +L L +++ L K Sbjct: 79 LKRLKEIEPTLVVIVMTGYADKDVILNALKADADDFITKPLNLLQLKTAIDKALVKK 135 >gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine kinase response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074402|gb|ADJ63801.1| PAS/PAC sensor hybrid histidine kinase response regulator protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-M 59 ++ IL+ +D+ +R ++ L GY V+ +G SA V + LLLTD+ +P M Sbjct: 562 SKTILVVDDEPLVRMVTVEVLRDLGYSVLEAEDGPSALRVVEACQEIDLLLTDVGLPNGM 621 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA PDL V+F+TG+A A+ + + +VL+KPF L V L+ Sbjct: 622 NGRQLADAIRAPRPDLPVLFVTGYAENAVLNHGHLERGMQVLTKPFAADVLARRVKELV 680 >gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676] gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676] Length = 243 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 77 CRRIRE-KHSLPIMFLSA 93 >gi|147921361|ref|YP_684825.1| chemotaxis response regulator [uncultured methanogenic archaeon RC-I] gi|110620221|emb|CAJ35499.1| chemotaxis response regulator [uncultured methanogenic archaeon RC-I] Length = 120 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI++ +D MR L L GYE+ NGA A DK +E L+ DIVMP ++GI Sbjct: 3 KIMIVDDAAFMRTLLKNILFPKGYEIAGEAENGAVAVDKYKELKPDLVTMDIVMPNVNGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ E DP+ KV+ T + + + KPF ++ EV ++L Sbjct: 63 EALKQIREFDPNAKVIMCTAVGQENMVRAAIMSGAKGYIVKPFQAPKVLEEVQKVL 118 >gi|323698789|ref|ZP_08110701.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. ND132] gi|323458721|gb|EGB14586.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio desulfuricans ND132] Length = 451 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 60/110 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + + +D+ + + +ALGK G+EV + G + ++ E+PF L D+ +P+MD Sbjct: 1 MRFRAAVIDDEAQAAKMVGRALGKLGFEVETFGLGHNFLARMAEDPFQLAFIDLKLPDMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE+ +++ + ITG ++A ++ A A + KPF L+++ Sbjct: 61 GIEILEAVKTGFENVEAVIITGHGSIASAVEATAKGAANYIVKPFRLQEI 110 >gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 232 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|323141127|ref|ZP_08076030.1| putative transcriptional regulatory protein QseB [Phascolarctobacterium sp. YIT 12067] gi|322414393|gb|EFY05209.1| putative transcriptional regulatory protein QseB [Phascolarctobacterium sp. YIT 12067] Length = 237 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 58/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD ++ + L L K V +G +AYD V + + +L+ D +MP + G++ Sbjct: 18 KILLAEDDINLGKLLSMLLKKQNITVNWVQDGEAAYDAVYADGYDVLVLDWMMPLLSGLD 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L +R E D K++ +T +A L KPF L +LV +N L Sbjct: 78 LCKRLREEDYQGKILLLTAKDTLADKVQGLNSGADDYLVKPFELEELVARLNAL 131 >gi|320353491|ref|YP_004194830.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121993|gb|ADW17539.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 446 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD+ MR L L + ++V + NG A + ++ + L+L+DI MP + G+ Sbjct: 2 KQILLVEDDEIMRISLHDRLRRERWQVDAAVNGRDALSLLDQKHYHLILSDIRMPGLGGM 61 Query: 63 ELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL A + P + + +T + +V A+ N A + KPF + DL+ +NR+ + Sbjct: 62 ELLEWARKQSPLIDIFMMTAYGSVEDAITCLRNGA--ADYILKPFEMDDLIIRINRIFEM 119 Query: 121 KN 122 + Sbjct: 120 QT 121 >gi|229528853|ref|ZP_04418243.1| sigma-54 dependent response regulator [Vibrio cholerae 12129(1)] gi|229332627|gb|EEN98113.1| sigma-54 dependent response regulator [Vibrio cholerae 12129(1)] Length = 479 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 5 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 124 Query: 122 N 122 + Sbjct: 125 S 125 >gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 243 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 77 CRRIRE-KHSLPIMFLSA 93 >gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550] gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550] Length = 243 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 77 CRRIRE-KHSLPIMFLSA 93 >gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131] gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131] Length = 228 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|149376130|ref|ZP_01893895.1| sigma 54-dependent transcriptional activator containing CheY-like receiver domain [Marinobacter algicola DG893] gi|149359535|gb|EDM47994.1| sigma 54-dependent transcriptional activator containing CheY-like receiver domain [Marinobacter algicola DG893] Length = 469 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 4/115 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ +R + K L AGYEV + A DK F L+++D+ +P G E Sbjct: 3 RILIVEDEEIIRSAVRKLLQHAGYEVADAGSVEEAEDKHDPSEFDLIISDLRLPGAAGTE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RRA PD V+ +T +A++ DS + ++KPF +++ V +L Sbjct: 63 LIRRA----PDTPVLIMTSYASLRSAVDSMKMGAVEYIAKPFDHDEMLEAVEGIL 113 >gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] Length = 229 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ ED++++ R L L GYE V + GA + RE+ + L+L DI++PEM Sbjct: 1 MSNRILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++ +R + V+ +T + V ++KPF + +L+ + L Sbjct: 61 GIDVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118 >gi|320546932|ref|ZP_08041234.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448450|gb|EFW89191.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 226 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ M R L AL GY+V S +G +A D+ E + +++ DI+MP GIE Sbjct: 2 KVLIAEDEVQMNRVLTTALTHEGYDVDSVYDGQAAIDQANENAYDVMVMDIMMPIKSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + ++ ++ +T + + D+ A L+KPF L++L+ Sbjct: 62 AVQEISQSGNQAHIIMLTAMSEIDDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1197 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D+R ++ L ++GY+V + NG + ++ L++TD++MP M G++ Sbjct: 833 RILVVDDNSDLRAYVGSILKQSGYQVWTARNGEEGWQMTQKCHPQLIVTDLMMPVMSGLD 892 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R ++ + ++ +T A A + LSKPF+ R+L+ EV LL +K Sbjct: 893 MIHTIRGSQDFKGIPIILLTAKADEASRIEGTEKGADAYLSKPFNDRELLAEVRNLLALK 952 >gi|78358754|ref|YP_390203.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221159|gb|ABB40508.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 653 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL +D++ +R L +L AGY V G A + ++LTDI MP + Sbjct: 1 MSHSILLVDDEEGIRTVLGLSLADAGYNVSVAATGEEALRLFDQSRPDIILTDIKMPGLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNRL 117 G++L +R + PD++V+ ITG + L S ++KP + L +N + Sbjct: 61 GLDLLKRVKNIAPDVEVIMITGHGDMQLAIQSLKQDATDFITKPINDDVLEIALNRAHER 120 Query: 118 LTIKN 122 ++++N Sbjct: 121 ISMRN 125 >gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] Length = 221 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ D+ R + K L K Y V SC +G A D V + L++TDI+MP +DG E Sbjct: 2 KILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEYDLIITDIMMPNVDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E + V+ +T + + DS A + KPF +L+ + L+ Sbjct: 62 FIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGAD---DYIVKPFEFDELLARIRVLM 116 >gi|315498430|ref|YP_004087234.1| integral membrane sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] gi|315416442|gb|ADU13083.1| integral membrane sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] Length = 717 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL ED++ +R + L + GYEV ++G A D ++ + F LL++D++MP +DG Sbjct: 600 RILFVEDEEIVRGIAARLLRQRGYEVTEASDGEEALDIIQSGDKFDLLISDVIMPGLDGP 659 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + ++A ++ VMFI+G+A + L KP ++ L V L Sbjct: 660 SMLKKARPFLGNVPVMFISGYAEAEFSDLLEDEVGVSFLPKPLDIKTLAERVKAQLA 716 >gi|325678043|ref|ZP_08157680.1| putative transcriptional regulatory protein ResD [Ruminococcus albus 8] gi|324110260|gb|EGC04439.1| putative transcriptional regulatory protein ResD [Ruminococcus albus 8] Length = 223 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 12/114 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + K L G+ V C N AY+++ + F ++++DI+MP+ DG E Sbjct: 3 KILVVEDDKELNSTVCKYLELNGFTAVGCLNAQDAYNEMYGQNFDMIISDIMMPKTDGFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRDLV 111 A L+ ++ ++F+T D N+ + L KP L +LV Sbjct: 63 FAETVRSLNKEIPIIFMTA------KDDMNSKQRGYRLGIDDYLVKPIDLEELV 110 >gi|213967057|ref|ZP_03395207.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301385242|ref|ZP_07233660.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063297|ref|ZP_07254838.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130183|ref|ZP_07256173.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928379|gb|EEB61924.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 676 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRALVSEVLSELGYAFIEAGQATDAVPILESAQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P LKV+FITG+A A ++++KPF L ++V +++ Sbjct: 618 RQLAEIARQLRPALKVLFITGYAEHAAVRAGFLDTGMELITKPFAFDHLTSKVRQMI 674 >gi|163849579|ref|YP_001637622.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661184|gb|ABY28551.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 692 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + L GY + + A+ ++ + LL+TD+ +P M+ Sbjct: 563 ETVLVVDDEPTVRMLITDILEDLGYAAIEAGDSATGLKVLQSDVRIDLLVTDVGLPGGMN 622 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A PDLKV+FITG+A A+ + P VL+KPF + ++ + ++ Sbjct: 623 GRQMADAARNHRPDLKVLFITGYAENAILGNGMLPPGMAVLTKPFAMDNMAARIRSMI 680 >gi|311746015|ref|ZP_07719800.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] gi|126576231|gb|EAZ80509.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] Length = 227 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN+K +LLAED+ + + ++L ++V+ C+NG A++K + E +L+ D++MP+ Sbjct: 1 MNEKTTVLLAEDEIALGTIIQESLESRDFKVILCSNGEIAWEKYKSEQPEVLVLDVMMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 DG LA + ++DP ++F+T + KPF + +L+ ++ Sbjct: 61 KDGFTLAEQIRKIDPFTPIIFLTSKGQTEDVVKGFGHGGNDYVRKPFSMEELIVRIH 117 >gi|329113957|ref|ZP_08242724.1| Aerobic respiration control sensor protein ArcB [Acetobacter pomorum DM001] gi|326696704|gb|EGE48378.1| Aerobic respiration control sensor protein ArcB [Acetobacter pomorum DM001] Length = 1105 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I + +D R+ + + L + G+ V NG D + LLL D+ MPEMDG Sbjct: 900 RTIGIVDDSSSHRQIMRELLERCGFNVRDFENGRECLDCLDLACPDLLLLDLTMPEMDGR 959 Query: 63 ELARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELA R + + +MF+TG + N + ++ V+ KP +L L+ EV ++L++ Sbjct: 960 ELALRIRQTSATHIPIMFLTGNLVESANRHVTSLEDCPVIGKPVNLSILIQEVGKVLSL 1018 >gi|299537958|ref|ZP_07051244.1| sporulation initiation phosphotransferase F [Lysinibacillus fusiformis ZC1] gi|298726540|gb|EFI67129.1| sporulation initiation phosphotransferase F [Lysinibacillus fusiformis ZC1] Length = 119 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R L + L K GY NG+ A E+ +L D+ +P MDGI Sbjct: 2 KRLLIVDDQQGIRLLLNEVLKKEGYITYLAANGSEALKYADEQEMDCVLLDMKIPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ RR + P L V +T + + + ++ + +KPF + ++ +EVN+ L + Sbjct: 62 EILRRLKKKFPKLPVFMMTAYGELDVVQEALELGAIRYFTKPFDIFEVRDEVNKALQV 119 >gi|298504409|gb|ADI83132.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 464 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+DD R F+ L GY+VV +G A +K+ E L++TD++MP ++G+E Sbjct: 5 RLLIADDDKKTRDFVAAFLKYKGYDVVQAFDGQDALEKLEVEDVHLVITDLMMPRVNGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + P V+ + F + + L KPF+L +L V R L Sbjct: 65 FVKKLKAMRPGTVVIAYSAFGNYEMTSNLLKAGVFFYLEKPFNLDELETHVKRGL 119 >gi|288926046|ref|ZP_06419975.1| response regulator [Prevotella buccae D17] gi|288337266|gb|EFC75623.1| response regulator [Prevotella buccae D17] Length = 535 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ +LL DD+ ++ + I L K GYEV + NNG+ A D R++ F L+L D +MP + Sbjct: 1 MSNGLLLWIDDEIELLKAHIIFLEKKGYEVTTVNNGSDAIDLCRQQTFDLILLDEMMPGL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E R E+ P V+ T + + K A L KP VN LLT Sbjct: 61 SGLETLHRLKEIQPSTPVVMCTKSEEENIMEQAIGSKIADYLIKP------VNPSQILLT 114 Query: 120 IK 121 +K Sbjct: 115 LK 116 >gi|296125343|ref|YP_003632595.1| two component, sigma54 specific, transcriptional regulator, Fis family [Brachyspira murdochii DSM 12563] gi|296017159|gb|ADG70396.1| two component, sigma54 specific, transcriptional regulator, Fis family [Brachyspira murdochii DSM 12563] Length = 444 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++R + K+L GYEVV+ NG + V + L++TD+ MPE G E Sbjct: 3 KILVIDDEKNIRDGIKKSLEFEGYEVVTAENGEKGIETVYKGGIDLVITDLKMPEKTGEE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + E D + V+ +TG V + ++KPF+L ++ + R L KN Sbjct: 63 FLKDILEFDKHIPVIVLTGHGNVETAVEMMRLGAYDFMTKPFNLDKMLLIIARALESKN 121 >gi|222099179|ref|YP_002533747.1| Response regulator [Thermotoga neapolitana DSM 4359] gi|221571569|gb|ACM22381.1| Response regulator [Thermotoga neapolitana DSM 4359] Length = 122 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+LL +D +R+ + L KAG EV+ NG A +K+ E L++ DI+MP MD Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKAGCEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK--NAKVLSKPFHLRDLVNEVNRLL 118 G + ++ E + K+ I A + ++ A KV+ KPF + EV RLL Sbjct: 61 GFTVLKKLQEKEEWKKIPVIVLTAKGGEDDETIALSLGAKKVMRKPFSPSQFIEEVKRLL 120 >gi|212694999|ref|ZP_03303127.1| hypothetical protein BACDOR_04537 [Bacteroides dorei DSM 17855] gi|212662452|gb|EEB23026.1| hypothetical protein BACDOR_04537 [Bacteroides dorei DSM 17855] Length = 1327 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D++R +LI +L Y V +C NG A V+E L+L+DI+MPEM G E Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEACIIVKEFWPELILSDIMMPEMGGDE 1125 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + D++ I AL + N + KV ++KPF+L+ L + LL Sbjct: 1126 L---CVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLL 1182 >gi|119944994|ref|YP_942674.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Psychromonas ingrahamii 37] gi|119863598|gb|ABM03075.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Psychromonas ingrahamii 37] Length = 472 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD D+ L + + GY V ++G +A + +R ++LTD+ MP MDG EL Sbjct: 15 VLIVDDDPDICSLLSYLMKREGYVVEIVHDGMAALELMRNRVPDIILTDLRMPRMDGFEL 74 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ + DL V+ +T +A V +S L+KPF +V V+R+L N Sbjct: 75 LKQVKLIKQDLPVVILTAYAGVHGAVESMKEGADDYLAKPFDNSKVVMLVHRILLQHN 132 >gi|39996655|ref|NP_952606.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983536|gb|AAR34929.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298505668|gb|ADI84391.1| sensor histidine kinase response regulator, PAS, PAC, PAS and GAF domain-containing [Geobacter sulfurreducens KN400] Length = 1112 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMD 60 + IL ED+ + L K GY+V+ N+ A +LL+TD++MP M+ Sbjct: 993 ETILFVEDEAAIMHMGAAMLEKLGYKVLPVNSPEEALQSAVTHAGSINLLITDVIMPGMN 1052 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA + +PD+K++F++G+ + L+ S ++ L KPF + L ++ L Sbjct: 1053 GHDLAVQLRAANPDIKILFMSGYTSDILSNRSELGQDLHFLQKPFTITTLDGKIREAL 1110 >gi|332526414|ref|ZP_08402536.1| chemotaxis signal transduction protein CheY [Rubrivivax benzoatilyticus JA2] gi|332110546|gb|EGJ10869.1| chemotaxis signal transduction protein CheY [Rubrivivax benzoatilyticus JA2] Length = 120 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL +D MR+ + L AG+ VV +G AY+K + F+L+LTD MP MDGI Sbjct: 2 HSILAVDDSASMRQMVSFTLKNAGFHVVEAVDGQDAYEKANQRDFNLVLTDQNMPRMDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ E +P K ++ +T ++ + A L KPF LV + +++ Sbjct: 62 SLTKKLRE-NPKFKSTPILILTTESSDQMKQAGRAAGATGWLVKPFDPAKLVEVIGKVI 119 >gi|229524136|ref|ZP_04413541.1| sigma-54 dependent response regulator [Vibrio cholerae bv. albensis VL426] gi|229337717|gb|EEO02734.1| sigma-54 dependent response regulator [Vibrio cholerae bv. albensis VL426] Length = 479 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 5 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 124 Query: 122 N 122 + Sbjct: 125 S 125 >gi|227819628|ref|YP_002823599.1| Fis family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338627|gb|ACP22846.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium fredii NGR234] Length = 444 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LL +D++++RR +AL AG+ V + + A + + ++++DI MP MDG Sbjct: 3 ESRVLLVDDEEELRRSSAQALELAGFRVDTFASAERALEFISFSFSGVVISDIRMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +R E+DP++ V+ +TG V L + + KPF + L + R L + Sbjct: 63 MTFLQRIREIDPEVPVILVTGHGDVQLAVRAMREGAYDFVEKPFTAQALAGTIRRALDWR 122 Query: 122 N 122 Sbjct: 123 G 123 >gi|162450818|ref|YP_001613185.1| putative regulatory protein [Sorangium cellulosum 'So ce 56'] gi|161161400|emb|CAN92705.1| putative regulatory protein [Sorangium cellulosum 'So ce 56'] Length = 516 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 60/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R L LG GY V + +G+SA +++ + + L+++D+ MP M GI Sbjct: 31 RILVVDDEKVIRDMLADFLGMEGYYVRTAEDGSSALNELTKGHYDLVISDLKMPRMGGIA 90 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + P+ + +TGF V D+ + KPF L ++V+ V R Sbjct: 91 LLDEIGKTAPNALTVIMTGFGTVETAIDAMKRGAYDYVLKPFKLDEVVHVVQR 143 >gi|13473723|ref|NP_105291.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14024474|dbj|BAB51077.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 230 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R + AL KAG + + +GA+A ++ L++ DI MPEMD Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTLGVADGAAALQEIGRRAPDLVVLDIGMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ RR D+ V+F++ + + D ++KPF R+LV Sbjct: 61 GLEVCRRLRHTS-DVPVLFLSARDEEIDRILGLEMGGDD-------YVTKPFSPRELVAR 112 Query: 114 VNRLL 118 VN +L Sbjct: 113 VNVIL 117 >gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|188582183|ref|YP_001925628.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylobacterium populi BJ001] gi|179345681|gb|ACB81093.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylobacterium populi BJ001] Length = 488 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 65/118 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N I++A+DD +R L +AL +AGYEV + +N ++ + V + L++TD+VMP+ + Sbjct: 3 NGHIIVADDDAAIRTVLNQALSRAGYEVRTTSNCSTLWRWVAQGEGDLVITDVVMPDENV 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + P+L ++ ++ ++ + L KPF L++L V R L+ Sbjct: 63 FDLLPRIKRVRPELPIIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELTAIVGRALS 120 >gi|94967964|ref|YP_590012.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94550014|gb|ABF39938.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 828 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEM 59 + ILL EDD +R + L GY V++ ++ +K+ E E LLLTD+VMP + Sbjct: 703 ETILLVEDDVQLRSMSVTLLQSCGYNVLTADD-PREIEKLCERHGERIDLLLTDVVMPHL 761 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A+R P +K++F++G+ + + + L KPF L +V +L Sbjct: 762 SGSEVAKRVAAKVPAIKILFMSGYPTHSKLDRTALEASGSFLQKPFAPAVLAAKVREVL 820 >gi|91781280|ref|YP_556487.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91693940|gb|ABE37137.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 807 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + IL+ EDD +++ ++ L + GY V+ +N A +R +L TD+VMP + Sbjct: 541 ETILVVEDDANVQSTVVDMLTELGYSVLKADNAEQALTVLRSGIHIDVLFTDVVMPGPLR 600 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+AR+A L P LK++F +G+ A+ ++LSKP+ +L +++ +L Sbjct: 601 SPEMARQAALLLPHLKILFTSGYTQNAIVHAGRLDAGVELLSKPYSQEELAHKLRYIL 658 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD D + L G++ + A +++R F +LLTD+ +P GIEL Sbjct: 689 ILVAEDDTDSLDAACEILQMLGHDAAKATDATQAMERLRARRFDVLLTDLNLPGASGIEL 748 Query: 65 ARRATELDPDLKVMFITG 82 A++A + P L V+F +G Sbjct: 749 AKQAVAVHPRLHVVFASG 766 >gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 228 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL+ +D+ D+ L L K GY+V + NNG A ++ ++ L+L DI+MP+MDG Sbjct: 4 NSRILIVDDEQDIIELLEYNLTKEGYDVRTANNGLKAIEEAKDFLPQLILMDIMMPKMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 +E R+ E+ P LK +I A + A A ++KP R L++ V+ Sbjct: 64 VESCRKIREI-PKLKESYIIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVS 119 >gi|327480548|gb|AEA83858.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 821 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDGI 62 IL+ +D+ +R L LG GY ++ + + ++ + LL+TD+ +P M+G Sbjct: 704 ILIVDDEPTVRLLLTDVLGDLGYTLIEAADSLTGLKLLQSDVGIDLLITDVGLPGGMNGR 763 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A E+ P LK +FITG+A A +S+ +VL+KPF + L V LL Sbjct: 764 QMADAGREVRPGLKTLFITGYAESAALGNSSLGAGMQVLTKPFSIDILATRVLELL 819 >gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192] gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192] Length = 900 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ ED ++ + L +AG EV NG A +KV + + L+L D+ MP MDG+ Sbjct: 654 HRILVVEDYMPNQKIVSLVLSEAGAEVEVAVNGREALEKVAQGRYDLVLMDVHMPVMDGL 713 Query: 63 ELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 E RR L DL I G A A D + A VL KP +++V EV RLL Sbjct: 714 EATRRIRALVGGDLP---IVGLTADAYREDVRRCREAGMDGVLIKPIRRKEMVEEVRRLL 770 Query: 119 T 119 + Sbjct: 771 S 771 >gi|290352109|dbj|BAI78765.1| putative two-component response regulator [Streptococcus pyogenes] Length = 134 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVN 115 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRR-LQTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARIR 114 >gi|260776486|ref|ZP_05885381.1| sigma-54 dependent response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260607709|gb|EEX33974.1| sigma-54 dependent response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 466 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + ++ A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADSAEDALIKLKAHSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRNIKQHWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|253700689|ref|YP_003021878.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775539|gb|ACT18120.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 752 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59 N+ IL+ ED+ + L + GY V S A + LLLTDI+MP+M Sbjct: 632 NETILVVEDEPSINALATTMLSELGYRVFSAGTPGEAVKVADGGQVKIDLLLTDIIMPDM 691 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +L+ PD+K +F++G+ + ++ N + L KPF + L +V L Sbjct: 692 NGRDLSELLHRSHPDMKCLFMSGYTSDIISERGNIGREVCFLQKPFTTQTLAAKVREAL 750 >gi|149377367|ref|ZP_01895112.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358379|gb|EDM46856.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 1173 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 47/82 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ +ILLAED+D RR + +G+ G E+V NGA A D EPF L+L DI MP M+ Sbjct: 818 LSGRILLAEDNDVNRRLVSLLVGRTGAELVHVGNGAEALDLALREPFDLILMDIQMPVMN 877 Query: 61 GIELARRATELDPDLKVMFITG 82 G + E ++ V+ +T Sbjct: 878 GRDATAAIREAGLNIPVIALTA 899 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 19/130 (14%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+AEDD+D RR + + L G +VV+ +G A E ++L D MP +DG Sbjct: 950 NGTILVAEDDEDNRRLVERELKAQGLDVVTVASGDDAVRTALSESVQMVLMDRHMPGLDG 1009 Query: 62 IELARRATELDPDLKVMFITGF--AAVALNPDSNAPKNA-------KVLSKPFHLRDLVN 112 +E R ++ TGF +A + +A VL+KP L++ Sbjct: 1010 VEATR----------LLRQTGFRRPVIAFTAGDQSETDALLAAGCDGVLNKPLDSEHLLS 1059 Query: 113 EVNRLLTIKN 122 ++R LT N Sbjct: 1060 TLDRFLTESN 1069 >gi|222056614|ref|YP_002538976.1| response regulator receiver protein [Geobacter sp. FRC-32] gi|221565903|gb|ACM21875.1| response regulator receiver protein [Geobacter sp. FRC-32] Length = 129 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 61/108 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+++ R L + L K G+ V S +NG A + +R++ +L++TDI MPEM+GI Sbjct: 9 KRILVVDDEENARIGLSRLLAKEGFLVESVSNGFEALNYLRQQEVNLIVTDINMPEMNGI 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + P V+ IT + V ++ + ++KP + +L Sbjct: 69 TFLKELNKSFPKSNVIMITAYGGVESYIEAMNLGAFEYINKPVKIEEL 116 >gi|2352978|gb|AAC46367.1| two-component response regulator [Vibrio cholerae] Length = 477 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|15642134|ref|NP_231766.1| sigma-54 dependent response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586838|ref|ZP_01676620.1| flagellar regulatory protein C [Vibrio cholerae 2740-80] gi|121727201|ref|ZP_01680368.1| flagellar regulatory protein C [Vibrio cholerae V52] gi|147673544|ref|YP_001217658.1| flagellar regulatory protein C [Vibrio cholerae O395] gi|153818986|ref|ZP_01971653.1| flagellar regulatory protein C [Vibrio cholerae NCTC 8457] gi|153825579|ref|ZP_01978246.1| flagellar regulatory protein C [Vibrio cholerae MZO-2] gi|227082260|ref|YP_002810811.1| flagellar regulatory protein C [Vibrio cholerae M66-2] gi|229507780|ref|ZP_04397285.1| sigma-54 dependent response regulator [Vibrio cholerae BX 330286] gi|229511983|ref|ZP_04401462.1| sigma-54 dependent response regulator [Vibrio cholerae B33] gi|229519119|ref|ZP_04408562.1| sigma-54 dependent response regulator [Vibrio cholerae RC9] gi|229607325|ref|YP_002877973.1| sigma-54 dependent response regulator [Vibrio cholerae MJ-1236] gi|254849221|ref|ZP_05238571.1| flagellar regulatory protein C [Vibrio cholerae MO10] gi|298497843|ref|ZP_07007650.1| flagellar regulatory protein C [Vibrio cholerae MAK 757] gi|9656686|gb|AAF95280.1| sigma-54 dependent response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549005|gb|EAX59044.1| flagellar regulatory protein C [Vibrio cholerae 2740-80] gi|121630446|gb|EAX62839.1| flagellar regulatory protein C [Vibrio cholerae V52] gi|126510481|gb|EAZ73075.1| flagellar regulatory protein C [Vibrio cholerae NCTC 8457] gi|146315427|gb|ABQ19966.1| flagellar regulatory protein C [Vibrio cholerae O395] gi|149740730|gb|EDM54829.1| flagellar regulatory protein C [Vibrio cholerae MZO-2] gi|227010148|gb|ACP06360.1| flagellar regulatory protein C [Vibrio cholerae M66-2] gi|227014031|gb|ACP10241.1| flagellar regulatory protein C [Vibrio cholerae O395] gi|229343808|gb|EEO08783.1| sigma-54 dependent response regulator [Vibrio cholerae RC9] gi|229351948|gb|EEO16889.1| sigma-54 dependent response regulator [Vibrio cholerae B33] gi|229355285|gb|EEO20206.1| sigma-54 dependent response regulator [Vibrio cholerae BX 330286] gi|229369980|gb|ACQ60403.1| sigma-54 dependent response regulator [Vibrio cholerae MJ-1236] gi|254844926|gb|EET23340.1| flagellar regulatory protein C [Vibrio cholerae MO10] gi|297542176|gb|EFH78226.1| flagellar regulatory protein C [Vibrio cholerae MAK 757] Length = 479 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 5 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 124 Query: 122 N 122 + Sbjct: 125 S 125 >gi|71275178|ref|ZP_00651465.1| Helix-turn-helix, Fis-type [Xylella fastidiosa Dixon] gi|170731171|ref|YP_001776604.1| response regulator receiver protein [Xylella fastidiosa M12] gi|71163987|gb|EAO13702.1| Helix-turn-helix, Fis-type [Xylella fastidiosa Dixon] gi|167965964|gb|ACA12974.1| response regulator receiver protein [Xylella fastidiosa M12] Length = 493 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ L+ +D+ D+R L+ LG+ G + + N A AY + + F+L +TD+ +P+ G Sbjct: 27 SRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSG 86 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL ++ P V IT F ++ L ++ +SKP L L V L + Sbjct: 87 IELVKKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELN 146 Query: 122 N 122 N Sbjct: 147 N 147 >gi|315127321|ref|YP_004069324.1| sigma-54 dependent response regulator; regulation of polar flagellae expression [Pseudoalteromonas sp. SM9913] gi|315015835|gb|ADT69173.1| sigma-54 dependent response regulator; regulation of polar flagellae expression [Pseudoalteromonas sp. SM9913] Length = 474 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 63/118 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ EDD +R LI L +G ++ N+ A +++E FSL+++D+ M M Sbjct: 1 MSNTILVVEDDAGLREALIDTLEMSGIACMAANSAEQAMVLLKKEAFSLVVSDVQMGAMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R PDL V+ +T +A + ++ ++KPF L+N V+R L Sbjct: 61 GLDLLRSIKLNYPDLPVLMMTAYATIDDAVEAMRLGAIDYMAKPFAPEVLLNMVSRYL 118 >gi|301019445|ref|ZP_07183618.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300399260|gb|EFJ82798.1| response regulator receiver domain protein [Escherichia coli MS 69-1] Length = 441 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY VV N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVVLANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|253568235|ref|ZP_04845646.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251842308|gb|EES70388.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1329 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+D++R +L+ +L Y V +C NG A V+E L+L+DI+MPEM G Sbjct: 1063 QRILIVEDNDELRAYLVNSLSPM-YNVQACGNGKEALIIVKEFWPELILSDIMMPEMRGD 1121 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + D++ I AL + N + + KPF +R L + L Sbjct: 1122 EL---CSTIKNDIETSHIPVLLLTALGEEQNILDGLDIGADEYIVKPFSIRILKASIANL 1178 Query: 118 L 118 L Sbjct: 1179 L 1179 >gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii Ech703] gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703] Length = 934 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 51/107 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L LG GY+V++ N+G A D + + P ++LTD+ MP MDG Sbjct: 807 RILVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVLSKNPVDIVLTDVNMPNMDGYR 866 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R ++ V+ +T A LSKP L L Sbjct: 867 FTQRLRDMAQTFPVIGVTANALAEERQRCLQAGMDNCLSKPVTLETL 913 >gi|256420292|ref|YP_003120945.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035200|gb|ACU58744.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 233 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 45/79 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD ++ L L Y+V C +G A R E F + L DI+MP MDG + Sbjct: 7 KILLAEDDTNLGMVLKNYLELNDYDVELCRDGILALAAFRREKFDICLLDIMMPNMDGFK 66 Query: 64 LARRATELDPDLKVMFITG 82 LA ++DPD+ + F++ Sbjct: 67 LAEEIRDVDPDIPLFFLSA 85 >gi|255745127|ref|ZP_05419076.1| flagellar regulatory protein FleQ [Vibrio cholera CIRS 101] gi|262153484|ref|ZP_06028614.1| flagellar regulatory protein FleQ [Vibrio cholerae INDRE 91/1] gi|255736957|gb|EET92353.1| flagellar regulatory protein FleQ [Vibrio cholera CIRS 101] gi|262030721|gb|EEY49355.1| flagellar regulatory protein FleQ [Vibrio cholerae INDRE 91/1] gi|327484664|gb|AEA79071.1| Flagellar regulatory protein FleQ [Vibrio cholerae LMA3894-4] Length = 477 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|92112381|ref|YP_572309.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Chromohalobacter salexigens DSM 3043] gi|91795471|gb|ABE57610.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Chromohalobacter salexigens DSM 3043] Length = 469 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 60/113 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++ +DD +R L +AL + EV S SA +++ +P +LLTDI MP +DG++ Sbjct: 6 RIMIVDDDRAIRWVLERALAQPDLEVESFERADSALERILRQPPDVLLTDIRMPGLDGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E PDL V+ +T + + S + L KPF + + + V R Sbjct: 66 LMARIREKYPDLPVIVMTAHSDLDSAVASYQGGAFEYLPKPFDVDEALALVRR 118 >gi|29346368|ref|NP_809871.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338263|gb|AAO76065.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1329 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+D++R +L+ +L Y V +C NG A V+E L+L+DI+MPEM G Sbjct: 1063 QRILIVEDNDELRAYLVNSLSPM-YNVQACGNGKEALIIVKEFWPELILSDIMMPEMRGD 1121 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + D++ I AL + N + + KPF +R L + L Sbjct: 1122 EL---CSTIKNDIETSHIPVLLLTALGEEQNILDGLDIGADEYIVKPFSIRILKASIANL 1178 Query: 118 L 118 L Sbjct: 1179 L 1179 >gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|120598248|ref|YP_962822.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. W3-18-1] gi|120558341|gb|ABM24268.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. W3-18-1] Length = 446 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE + G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLLLAQYECIDVACGEDAILALKQHQFDLVISDVQMEGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + + L+KPF L+N+V+R L +K Sbjct: 65 LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKT 123 >gi|301064170|ref|ZP_07204617.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300441790|gb|EFK06108.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 141 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 63/119 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL +D+ + + + + V + + A +K +E+ F ++ D++MPEMDG+ Sbjct: 2 EKVLLVDDEKEFLETMAERMEARDMNVTTTTSPKEALEKAQEDSFDAIILDLMMPEMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E + + +PDL+V+ +TG A V ++ +L KP L+ L ++ + T K Sbjct: 62 ETLKELKKKNPDLQVILLTGHATVQKGVEAMKLGATDLLEKPADLKVLTEKIKKAHTKK 120 >gi|265750340|ref|ZP_06086403.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263237236|gb|EEZ22686.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1327 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D++R +LI +L Y V +C NG A V+E L+L+DI+MPEM G E Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEACIIVKEFWPELILSDIMMPEMGGDE 1125 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + D++ I AL + N + KV ++KPF+L+ L + LL Sbjct: 1126 L---CVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLL 1182 >gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides fragilis 3_1_12] gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis 3_1_12] gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 224 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 43/63 (68%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+ V N+G S ++ +R+E F LL+ DI+MP M+G+E Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQEVFDLLIIDIIMPGMNGLE 62 Query: 64 LAR 66 L R Sbjct: 63 LCR 65 >gi|237727059|ref|ZP_04557540.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229433915|gb|EEO43992.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1327 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D++R +LI +L Y V +C NG A V+E L+L+DI+MPEM G E Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEACIIVKEFWPELILSDIMMPEMGGDE 1125 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + D++ I AL + N + KV ++KPF+L+ L + LL Sbjct: 1126 L---CVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLL 1182 >gi|229513786|ref|ZP_04403248.1| sigma-54 dependent response regulator [Vibrio cholerae TMA 21] gi|229348967|gb|EEO13924.1| sigma-54 dependent response regulator [Vibrio cholerae TMA 21] Length = 479 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 5 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 124 Query: 122 N 122 + Sbjct: 125 S 125 >gi|229522088|ref|ZP_04411505.1| sigma-54 dependent response regulator [Vibrio cholerae TM 11079-80] gi|229341013|gb|EEO06018.1| sigma-54 dependent response regulator [Vibrio cholerae TM 11079-80] Length = 479 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 5 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 124 Query: 122 N 122 + Sbjct: 125 S 125 >gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] Length = 243 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 77 CRRIRE-KHSLPIMFLSA 93 >gi|153801624|ref|ZP_01956210.1| flagellar regulatory protein C [Vibrio cholerae MZO-3] gi|124122801|gb|EAY41544.1| flagellar regulatory protein C [Vibrio cholerae MZO-3] Length = 479 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 5 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 124 Query: 122 N 122 + Sbjct: 125 S 125 >gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 674 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D DD R + L K+ Y++V +NG A ++ +++PF L+LTDI MP MDG E Sbjct: 547 ILVADDSDDNRILIEAFLKKSPYKLVMASNGLEALEEFKKQPFDLVLTDIQMPIMDGYEA 606 Query: 65 ARRATELDPDLKVMF---ITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRLL 118 R+ + + K+ I A + ++ + A LSKP + L+ EV + L Sbjct: 607 IRQIRQWESSQKMTTRTPIIALTAHVMKEEAEQIEQAGGDLHLSKPIQKKRLL-EVIQTL 665 Query: 119 TIKN 122 T N Sbjct: 666 THDN 669 Score = 40.0 bits (92), Expect = 0.100, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 6 LLAEDDDDMRRFLIKAL--GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L DD R+ +KA+ G ++ N+G A E+ L+L DI MP MDG E Sbjct: 8 ILVVDDTTANRYTMKAILGGLEHVVILEANSGEQALALTIEQQVDLILLDIQMPGMDGFE 67 Query: 64 LAR--RATELDPDLKVMFITG 82 A + + D+ ++FIT Sbjct: 68 TAHLLKMSASTRDIPIIFITA 88 >gi|28872507|ref|NP_795126.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213970793|ref|ZP_03398917.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato T1] gi|301383027|ref|ZP_07231445.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063432|ref|ZP_07254973.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130654|ref|ZP_07256644.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855762|gb|AAO58821.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213924465|gb|EEB58036.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato T1] Length = 461 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPQASGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHEQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|70729884|ref|YP_259623.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344183|gb|AAY91789.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1198 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D R+ L + L GY + +NGA A+ REEPF L++TD MP M G +L Sbjct: 956 ILVVDDSQANRQSLCEQLKYLGYSLSQGSNGAEAFKIWREEPFDLVITDCNMPVMSGYQL 1015 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 AR RA+E + + I GF A + ++A + L KP L DL Sbjct: 1016 ARHIRASEREQQSAPVHILGFTANVQPEEEQRCRDAGMNGCLFKPIALPDL 1066 >gi|331018756|gb|EGH98812.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 461 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPQASGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHEQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|320103007|ref|YP_004178598.1| response regulator receiver protein [Isosphaera pallida ATCC 43644] gi|319750289|gb|ADV62049.1| response regulator receiver protein [Isosphaera pallida ATCC 43644] Length = 168 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 29/135 (21%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA-------------YDKVREEPFSLL 50 +L+ +D++D+ L + KAG+ V N+G +A + + EPF L Sbjct: 27 SVLIVDDEEDLSWILARVAEKAGWSVRRANSGDAALRLLDPSCSSPAGHQSLGFEPF-LA 85 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK---------NAKVL 101 D+++P+ DG EL RR L PDL+ + ++G D++AP+ A L Sbjct: 86 FVDLMLPDFDGWELVRRLRSLCPDLRFVVVSGLL------DADAPRVRRAVKSGEVAGFL 139 Query: 102 SKPFHLRDLVNEVNR 116 +KPF L D + +NR Sbjct: 140 AKPFPLEDFRDWLNR 154 >gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 66 CRRIRE-KHSLPIMFLSA 82 >gi|218780671|ref|YP_002431989.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762055|gb|ACL04521.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 781 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS----LLLTDIVMP 57 + +L+ ED++ R L + GY+V++ + A E FS LL+TD+VMP Sbjct: 659 TETVLVVEDEEAFLRVSQMMLERLGYQVLAASGPKEAIQLA--ESFSGRIHLLMTDVVMP 716 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EM G +LA R TE P +K +F++G+ A + + ++KPF ++ +V Sbjct: 717 EMSGRDLAERLTESYPGMKCLFMSGYTANVIAHHGVLDEGINFINKPFSKHEVAIKVREA 776 Query: 118 LTIKN 122 L K Sbjct: 777 LDQKT 781 >gi|170745483|ref|YP_001766940.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170659084|gb|ACB28138.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 772 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + L GY + +GA ++ LL+TD+ +P M+ Sbjct: 651 ETVLIVDDEPTVRMLVTDVLSDLGYTAIEAADGAGGLSVLQSGARIDLLVTDVGLPGGMN 710 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A P+LKV+FITGFA AL D VL+KPF + L + ++ Sbjct: 711 GRQMADAARVGRPNLKVLFITGFAESALPGDGRLEPGMAVLTKPFAVEALAARIREMI 768 >gi|153213267|ref|ZP_01948679.1| flagellar regulatory protein C [Vibrio cholerae 1587] gi|153828620|ref|ZP_01981287.1| flagellar regulatory protein C [Vibrio cholerae 623-39] gi|254291372|ref|ZP_04962165.1| flagellar regulatory protein C [Vibrio cholerae AM-19226] gi|297582033|ref|ZP_06943952.1| flagellar regulatory protein C [Vibrio cholerae RC385] gi|124116067|gb|EAY34887.1| flagellar regulatory protein C [Vibrio cholerae 1587] gi|148875891|gb|EDL74026.1| flagellar regulatory protein C [Vibrio cholerae 623-39] gi|150422702|gb|EDN14656.1| flagellar regulatory protein C [Vibrio cholerae AM-19226] gi|297533728|gb|EFH72570.1| flagellar regulatory protein C [Vibrio cholerae RC385] Length = 479 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 5 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 124 Query: 122 N 122 + Sbjct: 125 S 125 >gi|88704289|ref|ZP_01102003.1| Transcriptional regulatory protein zraR [Congregibacter litoralis KT71] gi|88701340|gb|EAQ98445.1| Transcriptional regulatory protein zraR [Congregibacter litoralis KT71] Length = 445 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MNQ ++L+ EDDD +R L + GY V+ NG A ++ E F ++++D+ M E Sbjct: 1 MNQATRVLIVEDDDTLRDALCDTIEFGGYSAVAAGNGREALSRMDAESFDMVISDVQMDE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +DG L R P++ + IT +V + L KPF + L++ V R+ Sbjct: 61 LDGHGLLREVRSRKPEMPFVMITAHGSVRDAVSAMRDGATDYLLKPFEAQVLLDMVARM 119 >gi|148252462|ref|YP_001237047.1| histidine kinase [Bradyrhizobium sp. BTAi1] gi|146404635|gb|ABQ33141.1| putative sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Bradyrhizobium sp. BTAi1] Length = 534 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 +++IL+ ED D+ L GY N +A + + E F LL TD+VMP M Sbjct: 409 SERILIVEDRADVAELARSILEDFGYRTEIAANAPTALELLDSEIRFDLLFTDLVMPGGM 468 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G LAR A + P LKV+ TG++ A+ ++++KP+ DLV V +LL Sbjct: 469 NGTVLAREARKRQPKLKVLLTTGYSDAAVERADANIGEFEIINKPYRRTDLVRRVRQLL 527 >gi|328953202|ref|YP_004370536.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328453526|gb|AEB09355.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 461 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 34/80 (42%), Positives = 49/80 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD+ + L + LG GYEV S +G A K+RE +SL+L+DI MP +DGI Sbjct: 4 KDILVVDDDELVCNSLREMLGIEGYEVDSTLDGMDALQKLRETKYSLILSDIRMPSIDGI 63 Query: 63 ELARRATELDPDLKVMFITG 82 EL + D ++FITG Sbjct: 64 ELLKEVRGNSVDSLLIFITG 83 >gi|325105208|ref|YP_004274862.1| histidine kinase [Pedobacter saltans DSM 12145] gi|324974056|gb|ADY53040.1| histidine kinase [Pedobacter saltans DSM 12145] Length = 1365 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 NQ +L+ ED+ D+++F+ K + Y+V + +NG +A + +E P L+++DI MP MDG Sbjct: 1114 NQTLLIVEDNIDLQQFIEKIFNRR-YKVFTASNGKTALEITKENPIDLIISDIQMPSMDG 1172 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL + + L + V+ +T + + ++KPF+ L V+ LL Sbjct: 1173 FELCKNIKNNLLTSHIPVILLTAKTSTIHQEEGYYTGADAYITKPFNANILELRVSNLLE 1232 Query: 120 IK 121 + Sbjct: 1233 TR 1234 >gi|307299050|ref|ZP_07578852.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915475|gb|EFN45860.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 224 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +I L ED+ ++ L L K G+EV S NG+ A+D++ + P + + DI++P +D Sbjct: 1 MGTRINLVEDEKNLNSVLTSYLEKEGWEVKSFKNGSDAFDEIDDSP-DIWILDIMLPGID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL R + D + V+FI+ + + D P KPF R+LV Sbjct: 60 GFELLREIRKRDSMIPVIFISARDKDIDRVVGLEMGSDDYLP-------KPFLPRELVIR 112 Query: 114 VNRLL 118 V ++L Sbjct: 113 VKKIL 117 >gi|302038808|ref|YP_003799130.1| sigma-54 dependent response regulator [Candidatus Nitrospira defluvii] gi|300606872|emb|CBK43205.1| Sigma-54 dependent response regulator [Candidatus Nitrospira defluvii] Length = 473 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 59/113 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D + L + Y+ ++ + A A D ++ E L+LTD+ MP++DGIE Sbjct: 6 KILIVDDEQDALENCRRILSRVPYDCLTECDPARALDVIQRERPGLILTDLRMPDLDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + A DP ++V+ +T A V S ++KPF DLV+ R Sbjct: 66 VLAAAKRFDPSVQVVLLTAHATVQTAVTSMRYGAFDYITKPFTSADLVSVARR 118 >gi|228470069|ref|ZP_04054978.1| DNA-binding response regulator RprY [Porphyromonas uenonis 60-3] gi|228308207|gb|EEK17062.1| DNA-binding response regulator RprY [Porphyromonas uenonis 60-3] Length = 243 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++ L EDD+ + L + L YEV +G + R++ + L L DI+MP+MDG E Sbjct: 7 RVFLCEDDESLGIMLQEYLIAKEYEVDLFTDGEMGLEAFRQKKYDLCLIDIMMPKMDGFE 66 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LA+ L+P++ ++F+T A L D ++KPF +++L Sbjct: 67 LAKEIRTLEPEIPIIFVTAKDQKKDILAGFKLGADD-------YITKPFSMQEL 113 >gi|160940196|ref|ZP_02087541.1| hypothetical protein CLOBOL_05085 [Clostridium bolteae ATCC BAA-613] gi|158436776|gb|EDP14543.1| hypothetical protein CLOBOL_05085 [Clostridium bolteae ATCC BAA-613] Length = 225 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ + + L KAGYE V +NG A+D +E L++TD++MP ++G + Sbjct: 5 KILIVEDDEKLSQLYKIVLNKAGYETVLASNGQEAWDIFDQEHIDLVITDVMMPVLNGYD 64 Query: 64 LARRATELDPDLKVMFITG 82 L + +P + V+ IT Sbjct: 65 LVKILRNENPLIPVLMITA 83 >gi|114328996|ref|YP_746153.1| sensory transduction protein kinase [Granulibacter bethesdensis CGDNIH1] gi|114317170|gb|ABI63230.1| sensory transduction protein kinase [Granulibacter bethesdensis CGDNIH1] Length = 909 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 1/107 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R LI L +AG+ + N A ++ +L TDI +P + G+EL Sbjct: 785 ILVTEDDPLIRMNLIDLLEEAGHSPIEAENAEEALSYLKTHSPDILFTDISLPGLSGVEL 844 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 A A + P + ++F +G+A V P + +N+ +L KPF +LV Sbjct: 845 ACLARKRYPSIGIIFSSGYADVPGLP-AEMKQNSCLLGKPFTSHELV 890 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ ED+D +R+ + + L + GY V++ + A + L+ TDI+MP M Sbjct: 630 HETILVVEDEDAVRQSVQETLSQLGYNVLTARDADEALAILDSTIRIDLVFTDIIMPGTM 689 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA R +L P+ ++F +G+ +++ D + P ++L+KP+ L + + L Sbjct: 690 RGTDLAVRIRQLRPETAILFTSGYTDSSVHRDDDNP--IQLLNKPYSRDKLAHSIRAAL 746 >gi|32267155|ref|NP_861187.1| hypothetical protein HH1656 [Helicobacter hepaticus ATCC 51449] gi|32263208|gb|AAP78253.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 223 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KILL EDD + L++ L + GY V C+N A D E+ F L + D+ +P+ + Sbjct: 1 MSAKILLLEDDFVLSEILLEFLQEQGYNVRLCDNAKDALDCAYEQYFDLWILDVKVPQGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++ + E D +FIT + + + KPF L +L +N LL Sbjct: 61 GFDVLKELRECGKDTPAIFITSLDRIDDLHNGYKVGCDDYIKKPFELLELQCRINTLL 118 >gi|16263071|ref|NP_435864.1| FixL-related histidine kinase [Sinorhizobium meliloti 1021] gi|14523729|gb|AAK65276.1| FixL-related histidine kinase [Sinorhizobium meliloti 1021] Length = 528 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ IL+ EDD +RR ++ L AGY V+ G A + E P SL+ TD++MP + Sbjct: 413 HETILVVEDDARVRRVVVARLRDAGYSVIEAEAGTKALQLLAEHPEVSLVFTDMIMPGGI 472 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 DG ELA L PD+K++F +G+A P + L KP+ Sbjct: 473 DGGELAEHVRALRPDVKMLFTSGYA----EPSAAGRAVGSWLQKPY 514 >gi|89095092|ref|ZP_01168019.1| Response regulator [Oceanospirillum sp. MED92] gi|89080653|gb|EAR59898.1| Response regulator [Oceanospirillum sp. MED92] Length = 463 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 57/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ +R+ K L AG+EV+ C++ A + E ++++D+ MPEMDG+ L Sbjct: 15 VLLVDDESMVRKSTQKWLQLAGFEVIECDSAIQALTYIDEAFSGIVVSDVKMPEMDGLAL 74 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P L V+ +TG V + ++ + KPF+ LV + R Sbjct: 75 LDEVVSRVPGLPVVLVTGHGDVDMAINAMRQGAYDFIEKPFNPERLVETIQR 126 >gi|148262989|ref|YP_001229695.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396489|gb|ABQ25122.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 480 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++ MR L KAL K G+ V +G A ++ + L + DI MP + G+EL Sbjct: 6 ILVADDEESMRWVLSKALKKKGFSVDLARDGDEALRYIKTNTYDLAILDIKMPGLSGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL---RDLVNEVNR 116 R EL DL V+ +T A++ ++ L+KPF L ++ +VNR Sbjct: 66 LDRVRELKSDLLVVIMTAEASMKNAVEAMKRGAYDYLTKPFDLDVIDAIIEKVNR 120 >gi|95928935|ref|ZP_01311680.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95134836|gb|EAT16490.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 462 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 61/117 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q++LL ++++ + R + L +GY+V S A + E + L+++DI MP MDG Sbjct: 4 GQRVLLIDNEEGLCRMMEAVLKDSGYQVKSYTRSFEAVEDFEAETYDLVISDIKMPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ ++ D + V+ IT +A V + + +L+KPF +L+ V L Sbjct: 64 LEVLQKIRSKDQRVPVIMITAYATVETSIQALRKGAYDMLTKPFEPEELLYRVKNAL 120 >gi|116622873|ref|YP_825029.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226035|gb|ABJ84744.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1100 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +L+ ED D+RR + L GY ++ N A + E LL+TD+VMP G Sbjct: 860 LLVVEDQADVRRLALSILKLQGYRLLEAENADRALEVSGNYAEAIDLLVTDVVMPGRTGR 919 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA P +KV++I+G++ A+ + L KPF L ++V +L Sbjct: 920 ELAESLAAQRPGIKVLYISGYSGDAIAAHGCLDPETEYLPKPFSPEQLTSKVREVL 975 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 45/81 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ IL+ +DD ++ L L AGY VV +G D + +P L++TD+VMPE +G Sbjct: 982 SRTILVIDDDAEVNGLLRHILTGAGYHVVVACDGKKGMDVLERQPVDLVITDLVMPEQEG 1041 Query: 62 IELARRATELDPDLKVMFITG 82 +E R P L V+ I+G Sbjct: 1042 LETVTRLHAQRPKLPVIAISG 1062 >gi|295134954|ref|YP_003585630.1| response regulatory protein, sigma 54 related protein [Zunongwangia profunda SM-A87] gi|294982969|gb|ADF53434.1| response regulatory protein, sigma 54 related protein [Zunongwangia profunda SM-A87] Length = 388 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KILL ED+ +RR L+K L + Y V +G + + +++E + L+L DI MP+MDG Sbjct: 3 KILLIEDEAAIRRVLVKILNEENKDYNVTEAEDGLAGMELIKKEDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ +++ P++ + I+G + + +SKP L L+N V L Sbjct: 63 VEVLEATSKIKPEIPFVMISGHGDLDTAVQTMRMGAFDYISKPPDLNRLLNAVRNAL 119 >gi|258592861|emb|CBE69170.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 852 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DDD +R L + L AG+ VV G ++ F L+LTD+ MPE G E+ Sbjct: 733 ILVIDDDDLVRELLSELLRAAGHTVVQAGGGLEGIRLFQQGSFHLVLTDLGMPECSGWEV 792 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRLLTIK 121 A ++ P ++ ITG+ AL D + A VL+KPF + D++ V L ++ Sbjct: 793 ASTIKKIAPRTPIVLITGW---ALTLDRTKLREAGIDLVLNKPFQIVDVMALVAEGLELR 849 >gi|269925906|ref|YP_003322529.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermobaculum terrenum ATCC BAA-798] gi|269789566|gb|ACZ41707.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermobaculum terrenum ATCC BAA-798] Length = 466 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 60/117 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ IL+A+DD +R L L GY+V +G D+V++ L+L D+ MP++DG Sbjct: 5 NRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKIDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+ ++ ++ ++ +T F + + ++KPF L D+ +NR Sbjct: 65 IEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRFF 121 >gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 1002 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ DMR ++ + L + ++V + NGA A ++++++ L+LTD++MPEMDG + Sbjct: 647 RILLVDDNADMRDYVGRLLSER-WQVETAANGAIALERLQQDLPDLVLTDVMMPEMDGFQ 705 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + R+ L + V+ ++ A A L KPF R+L+ V L + Sbjct: 706 LLQVLRSDPLTQSIPVILLSARAGEVATIAGLAAGADDYLIKPFSARELIARVETQLQM 764 >gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+++L+ ED+ + R L L GY V + +G + Y+ + L+L D+++PE++ Sbjct: 1 MNERVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ RR + + V+ +T V ++KPF + +L+ V +L I Sbjct: 61 GIEVLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRI 120 >gi|117919788|ref|YP_868980.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. ANA-3] gi|117612120|gb|ABK47574.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. ANA-3] Length = 446 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ + +G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAIIVLKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + P L V+ +T +A + + L+KPF L+N+V+R L +K Sbjct: 65 LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|323963777|gb|EGB59276.1| sigma-54 interaction domain-containing protein [Escherichia coli M863] gi|327250477|gb|EGE62187.1| transcriptional regulatory protein zraR [Escherichia coli STEC_7v] Length = 441 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY VV N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVVLANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|290352249|dbj|BAI78835.1| putative two-component response regulator [Streptococcus pyogenes] Length = 146 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVTRR 67 >gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096] gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|194335818|ref|YP_002017612.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194308295|gb|ACF42995.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1419 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++L +D+ + + L + G+ V ++ A + R+EP F L++TD+ MPEM+G Sbjct: 1273 QLLFIDDEVSTLKMMSALLTQLGFRVKVFSSPLKALEVFRQEPAAFDLVITDLTMPEMNG 1332 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKN-AKVLSKPFHLRDLVNEVNRLLT 119 IEL E+ DL V+ +TG+ N S A +++L KP + L E+N +++ Sbjct: 1333 IELVSALHEIREDLPVILMTGYGKEIENNASLARYGISRLLKKPVKIAQLSREINEVIS 1391 >gi|330874360|gb|EGH08509.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 461 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEASGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHEQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|222054470|ref|YP_002536832.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221563759|gb|ACM19731.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 456 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R L + L K GYEV + NG A VREE L+L DI +P + G+E Sbjct: 5 RILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLVREEQPELVLLDIQLPGIGGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + E D ++ V+ +T + ++ ++KPF+L +L Sbjct: 65 VLEKVKEFDDEIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDEL 111 >gi|71733597|ref|YP_274800.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554150|gb|AAZ33361.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 652 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 534 ETVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNG 593 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 594 RQLAEIARQLRPGLKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDQLTSKVREMI 650 >gi|258404220|ref|YP_003196962.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257796447|gb|ACV67384.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 946 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVM 56 ++ +L+ ED++ +R + L GY VVS A + +R EE +LL+TD+VM Sbjct: 826 SETVLVVEDNEMVRELTCEVLFSLGYSVVS---AAEPREGMRVASQTEEEIALLVTDVVM 882 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P MDG +L + P L+ +FI+G+ + L KPF ++L V + Sbjct: 883 PYMDGRKLYQELQADRPGLRALFISGYTDNHIANTGGMEAGTAFLQKPFTSQELARSVRQ 942 Query: 117 LL 118 +L Sbjct: 943 VL 944 >gi|182682547|ref|YP_001830707.1| two component, sigma54 specific, Fis family transcriptional regulator [Xylella fastidiosa M23] gi|182632657|gb|ACB93433.1| two component, sigma54 specific, transcriptional regulator, Fis family [Xylella fastidiosa M23] Length = 493 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ L+ +D+ D+R L+ LG+ G + + N A AY + + F+L +TD+ +P+ G Sbjct: 27 SRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSG 86 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL ++ P V IT F ++ L ++ +SKP L L V L + Sbjct: 87 IELVKKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELN 146 Query: 122 N 122 N Sbjct: 147 N 147 >gi|148546735|ref|YP_001266837.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida F1] gi|148510793|gb|ABQ77653.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida F1] Length = 451 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R+ L L G+ + + A + V ++ FSL+++D+ MP MD Sbjct: 1 MAIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLDDAFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L + P L V+ +T AAV ++ L KPF + L++ V R Sbjct: 61 GHQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAVDYLVKPFEPKALLSLVER 116 >gi|289668763|ref|ZP_06489838.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 951 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEMDGI 62 +LL ED+ +R + + L +AGY V+ G +A +++R E +L+TD+ + ++G Sbjct: 831 VLLVEDETAIRVLISEVLTEAGYRVIETAEGNAAIERLRSHEHIDVLVTDVGLTGGLNGR 890 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A + P L V+F+TG+AA A + +VL+KPF +L + +LL Sbjct: 891 QVADAGRQSRPALPVLFVTGYAATAAVGAGQLDEGMEVLTKPFQAIELERRMAQLL 946 >gi|289661809|ref|ZP_06483390.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 940 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEMDGI 62 +LL ED+ +R + + L +AGY V+ G +A +++R E +L+TD+ + ++G Sbjct: 820 VLLVEDETAIRVLISEVLTEAGYRVIETAEGNAAIERLRSHEHIDVLVTDVGLTGGLNGR 879 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A + P L V+F+TG+AA A + +VL+KPF +L + +LL Sbjct: 880 QVADAGRQSRPALPVLFVTGYAATAAVGAGQLDEGMEVLTKPFQAIELERRMAQLL 935 >gi|212633572|ref|YP_002310097.1| response regulator receiver [Shewanella piezotolerans WP3] gi|212555056|gb|ACJ27510.1| Response regulator receiver [Shewanella piezotolerans WP3] Length = 212 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD ++ R +++ L G+ V + + A + + F + L D++M M G+E Sbjct: 4 ILLAEDDVELSRNMVEILELEGFAVTAVTSAEEAIEVSGQRHFDIALLDLLMSGMTGVEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P + V+ IT +A V D+ V++KPF ++L+ + R LT K Sbjct: 64 ISNLRQNQPFIAVIIITAYATVDTAVDAMKKGADSVITKPFKSQELIVTIRRSLTEKQ 121 >gi|116750982|ref|YP_847669.1| response regulator receiver modulated metal dependent phosphohydrolase [Syntrophobacter fumaroxidans MPOB] gi|116700046|gb|ABK19234.1| response regulator receiver modulated metal dependent phosphohydrolase [Syntrophobacter fumaroxidans MPOB] Length = 492 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D++ + + L GYE + A A + E PF ++++DI M D Sbjct: 1 MVKRILIVDDEERYCDVVRQILSSRGYETETAAAPADALRMLHERPFEMVVSDIRMKGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI++ R A E P+L + +TG+A+ D + KPF R+L ++ R+ Sbjct: 61 GIQMMREALEEFPELDFIIMTGYASEYSYTDIVEAGAGDFIIKPFSARELEAKIGRI 117 >gi|283853687|ref|ZP_06370918.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] gi|283570928|gb|EFC18957.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] Length = 577 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 +L+ +D++ R + LG+ GYEV +G A D V F +++TD+ M +DG+ Sbjct: 14 LLVVDDEEIARTNMAHVLGREGYEVRVAGDGLEALD-VLTGGFEADVVVTDLKMERLDGM 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL RR + PD V+ +TGFA V ++ A L KP +L +L V +L + Sbjct: 73 ELLRRLRRVAPDAAVVMVTGFATVGTAVEALRAGAAHYLGKPVNLDELKRTVRAVLEART 132 >gi|298491243|ref|YP_003721420.1| GAF sensor-containing adenylate/guanylate cyclase ['Nostoc azollae' 0708] gi|298233161|gb|ADI64297.1| adenylate/guanylate cyclase with GAF sensor(s) ['Nostoc azollae' 0708] Length = 1180 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +L+ +D+ DMR ++ + L +GY++++ NG Y+ + L++TD++MP + Sbjct: 822 IGQSVLVVDDNPDMRSYVAEILAHSGYQIITARNGYEGYNIAQGVRPDLIITDLMMPLLT 881 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + R+ + + ++ +T + L KPF+ R+L+ EV LL Sbjct: 882 GIEMIQMIRSQDQVRGIPIILLTAKVDEETRIEGIEHGADAYLGKPFNDRELLAEVRNLL 941 Query: 119 TIK 121 +K Sbjct: 942 ALK 944 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +D+ D L ++ + Y+V+ N+G +A + + +E +++++D MP M G Sbjct: 10 KILVVDDEPDNLDLLYRSFYRE-YQVLRANSGPAALELLAQEGDIAVIISDQRMPMMSGT 68 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E PD+ + +TG+ V L N+ K K ++KP+ +L V + L Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINSGKVFKYVTKPWEAEELKAVVRQALDTH 128 Query: 122 N 122 N Sbjct: 129 N 129 >gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ EDD +R L ALG AGY V S +G +A + L++ D+++P+ DG Sbjct: 13 GHTVLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVMLPDTDG 72 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R V+F+T A V + ++KPFH+++++ V +L Sbjct: 73 FRLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAIL 129 >gi|306826251|ref|ZP_07459585.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431527|gb|EFM34509.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 224 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R + AL + GY V S NG A +K + + L++ DI+MP GIE Sbjct: 2 KILLAEDETQLNRVITVALEREGYSVDSVFNGQDAVEKAKSNHYHLMIFDIMMPIKTGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T A V D+ A L+KPF L++L+ Sbjct: 62 ALKEIRQAGNTTHVIMLTAMAEVNDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 3/112 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLV 111 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELL 110 >gi|148262094|ref|YP_001228800.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395594|gb|ABQ24227.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 508 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D+ L L AGY+ + +G A + E F+L+L DI MP MDG++ Sbjct: 5 KILIVDDEPDIALILKLQLEDAGYKTATARDGVEALAAIAREKFALVLLDIKMPRMDGMQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D+ V+ +T + + ++ ++KPF D++ +V R + + Sbjct: 65 VLERVQSHYSDVAVVMMTAHGSEDIAVEAMKNGAFDYIAKPFSSEDVLQKVKRAIQL 121 >gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|268318063|ref|YP_003291782.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] gi|262335597|gb|ACY49394.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] Length = 519 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL A+D+ ++ R I L GYEV S NGA A ++VR + F ++L D MP M G+E Sbjct: 6 RILWADDEIELLRPHILFLETKGYEVTSVTNGADAVEQVRRQHFDVVLLDEQMPGMGGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P+L V+ +T L ++ + + L+KP + ++ RLL Sbjct: 66 TLSEIKAIAPELPVVLVTKSEEEQLMEEALGRQISDYLTKPVNPSQILLTCKRLL 120 >gi|78777655|ref|YP_393970.1| two component transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78498195|gb|ABB44735.1| two component transcriptional regulator, winged helix family [Sulfurimonas denitrificans DSM 1251] Length = 218 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 59/114 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ + + + L G+ V S NG +A + ++E + LL+ DI +P +DG+ Sbjct: 2 KILLLEDEVMLNESICEYLDSEGHHVESFFNGLAALEAIKENSYDLLVLDINVPGIDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + EL + V++I+ + + L KPFHL++L V+R+ Sbjct: 62 FLEKIHELKIHVSVIYISALVDIEDISRAYTLGCHDYLKKPFHLKELSLRVDRI 115 >gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 244 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ +D+ ++ L +L AGY+V + +G A K RE L++ D++MP +D Sbjct: 12 MSPHLLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMPGLD 71 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ RR D + V+F+T AV ++KPF L +LV V LL Sbjct: 72 GFEVVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALL 129 >gi|119945448|ref|YP_943128.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Psychromonas ingrahamii 37] gi|119864052|gb|ABM03529.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Psychromonas ingrahamii 37] Length = 468 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD D+ L + + GY V ++G +A D R ++LTD+ MP MDG EL Sbjct: 15 VLIVDDDPDICSLLSYLMKREGYVVQIVHDGMAALDLTRNRAPDIILTDLRMPRMDGFEL 74 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + DL V+ +T +A + +S L KPF +V V+R+L Sbjct: 75 LKQVKLIKQDLPVVILTAYAGINGAVESIKAGADDYLPKPFDNSKVVMLVHRIL 128 >gi|225028678|ref|ZP_03717870.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353] gi|224953988|gb|EEG35197.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353] Length = 225 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 64/114 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ ++ + K+L ++GYEV +C +G A D + E + L++ D+ +P MDG++ Sbjct: 2 RLLIVEDEKELCDTISKSLYESGYEVDTCYDGYEALDYILTEDYDLIVLDLNLPGMDGMD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + + + KV+ ++ + + + + KPFH+++L + L Sbjct: 62 ILRELRKENEETKVLILSARSQIIDKVEGLDAGANDYMEKPFHIQELEARIRSL 115 >gi|118580077|ref|YP_901327.1| two component sigma54 specific Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502787|gb|ABK99269.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 462 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ MR FL L GYE V + A + F L+++D+ MP +D Sbjct: 1 MKTRILIVDDELSMREFLSILLEGEGYETVVAAHAEQALSLLDSGLFDLVISDVQMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIEL R + P V+ +T + A ++ +SKPF + ++ Sbjct: 61 GIELLSRIKTVSPGTAVLMMTAYCAAEQAVEAMKLGAYDYISKPFKVEEI 110 >gi|91200007|emb|CAJ73049.1| similar to response regulator [Candidatus Kuenenia stuttgartiensis] Length = 138 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 67/118 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++++IL+ +D++ R+ L +L G+E NG A ++++++ ++++L D+ MP +D Sbjct: 2 LSKRILIVDDEEGYRKVLSNSLTDLGFETTVAANGMDALEEMKKKNYAVILLDMKMPGID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R + ++ IT + + ++ KV+ KPF + ++ + +N L+ Sbjct: 62 GIELLERIRKEQLFSSIVIITAYTYEDIAREAICKGAKKVIRKPFSMDEIKSCLNELM 119 >gi|71899816|ref|ZP_00681966.1| Helix-turn-helix, Fis-type [Xylella fastidiosa Ann-1] gi|71730407|gb|EAO32488.1| Helix-turn-helix, Fis-type [Xylella fastidiosa Ann-1] Length = 470 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ L+ +D+ D+R L+ LG+ G + + N A AY + + F+L +TD+ +P+ G Sbjct: 4 SRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL ++ P V IT F ++ L ++ +SKP L L V L + Sbjct: 64 IELVKKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|71898259|ref|ZP_00680433.1| Helix-turn-helix, Fis-type [Xylella fastidiosa Ann-1] gi|71731998|gb|EAO34055.1| Helix-turn-helix, Fis-type [Xylella fastidiosa Ann-1] Length = 470 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ L+ +D+ D+R L+ LG+ G + + N A AY + + F+L +TD+ +P+ G Sbjct: 4 SRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL ++ P V IT F ++ L ++ +SKP L L V L + Sbjct: 64 IELVKKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVTRR 67 >gi|257487867|ref|ZP_05641908.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008574|gb|EGH88630.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 676 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRTLISEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPGLKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 674 >gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 877 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ +R ++ L + G V ++GA A + EE F ++ D+ MP MDG+E Sbjct: 640 RVLLAEDNRANQRLMMSLLERMGLSVRCASDGAEALRALEEETFDMVFMDVQMPAMDGLE 699 Query: 64 LARRATELDPDL-KVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 + RR E++ + I G A + D A A + L+KP L E+ R+ Sbjct: 700 VTRRFREMERGTGRRTLIIGLTAFSSPDDRRACVEAGMDRFLAKPVSPSRLRREMGRI 757 >gi|224371741|ref|YP_002605905.1| response regulator [Desulfobacterium autotrophicum HRM2] gi|223694458|gb|ACN17741.1| response regulator [Desulfobacterium autotrophicum HRM2] Length = 450 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M QKI L+ +D+ +R L K GY + +G +A + ++ F +L D+ MP Sbjct: 1 MKQKISVLIVDDELIVRESLFHWFKKEGYTADTAPSGEAALGMLEKQSFDVLFVDMKMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 MDG+EL R+ E PD V+ IT + ++ + A L KPF Sbjct: 61 MDGLELVRQTRERYPDSSVVIITAYGSIDTAVTAMKKGAADYLLKPF 107 >gi|220917058|ref|YP_002492362.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219954912|gb|ACL65296.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 464 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 53/83 (63%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +R L L K GY V +G +A +K++ E +S+L+ D+ MP MDG++ Sbjct: 7 RILVVDDEEIVRESLGGWLEKDGYSVHVAADGFAAVEKLKGERWSILIVDLKMPGMDGLQ 66 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + A +L P+L V+ +T +A V Sbjct: 67 VLEEAKKLLPELAVVIMTAYATV 89 >gi|312891249|ref|ZP_07750768.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311296209|gb|EFQ73359.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 230 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILL EDD ++ L L K ++VV C +G + F LL+ D++MP+ DG Sbjct: 2 KILLVEDDPNLGMLLQDYLQLKGKFDVVLCKDGEEGLKAFTKSTFDLLILDVMMPKKDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + +++P + ++F T A + + ++KPF + +L+ +N LL Sbjct: 62 TLGKEIRKMNPKVPIIFATAKAMIEDKTQAFNLGGDDYITKPFRIEELLLRINALL 117 >gi|284161653|ref|YP_003400276.1| response regulator receiver protein [Archaeoglobus profundus DSM 5631] gi|284011650|gb|ADB57603.1| response regulator receiver protein [Archaeoglobus profundus DSM 5631] Length = 122 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ EDD + + LG YEV+ NG A +K +E ++L D++MP MDGIE Sbjct: 6 KVMVVEDDLAVLEAVQVMLGDR-YEVIVATNGKEAIEKYQEYKPDIVLMDMLMPVMDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 ++ E+DP K I G A A+N + +++ KPF L+ + + L Sbjct: 65 ATKKIKEIDPQAK---IIGLTAYAINKGKELLEAGALEIIGKPFTRSQLIETIEKCL 118 >gi|146305209|ref|YP_001185674.1| response regulator receiver protein [Pseudomonas mendocina ymp] gi|145573410|gb|ABP82942.1| response regulator receiver protein [Pseudomonas mendocina ymp] Length = 135 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + I+L EDDD +R+ + L + GY V + +G+SA ++ ++P LL++DI +P+MDG Sbjct: 10 KTIVLVEDDDVVRQLTAQVLEEFGYRVQALRDGSSALALLQSDQPCDLLMSDIGLPDMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 L A +L P L V+F +G+ L + A A + KP+ L L + L Sbjct: 70 RALVEAARKLRPTLPVLFASGYNERELLDEVRARDTAAATDSIVKPYDLTVLARRLEEL 128 >gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVTRR 67 >gi|330962122|gb|EGH62382.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 461 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPQATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHEQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|300024327|ref|YP_003756938.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526148|gb|ADJ24617.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 229 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDDD++ L+ L +AG+ V +NGA Y ++ ++ + D+ +P+M G++ Sbjct: 14 RILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQMQGLD 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R D L V+ ++ A D ++KPFH+ ++ + L+ Sbjct: 74 VLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALI 128 >gi|210614641|ref|ZP_03290252.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787] gi|210150631|gb|EEA81640.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787] gi|295108131|emb|CBL22084.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDG 61 KILL EDD ++ + + +AL K GY V CN+G S+ Y + + L + D ++P +DG Sbjct: 3 KILLMEDDLNLCQSIQQALKKEGYSVDCCNDGESSMIYALNTDYGYDLAIVDRMLPIIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + + + V+ ITG +A+ D L KPFH+R+L+ V L Sbjct: 63 LTIIKAMRRKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRAL 118 >gi|28199795|ref|NP_780109.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|28057916|gb|AAO29758.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|307578826|gb|ADN62795.1| two-component system, regulatory protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 470 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ L+ +D+ D+R L+ LG+ G + + N A AY + + F+L +TD+ +P+ G Sbjct: 4 SRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL ++ P V IT F ++ L ++ +SKP L L V L + Sbjct: 64 IELVKKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|15839134|ref|NP_299822.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|9107754|gb|AAF85342.1|AE004061_7 two-component system, regulatory protein [Xylella fastidiosa 9a5c] Length = 497 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 2/124 (1%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MNQ L+ +D+ D+R L+ LG+ G + + N A AY + + F+L +TD+ +P+ Sbjct: 28 MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPD 87 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL + P V IT F ++ L ++ +SKP L L V L Sbjct: 88 GSGIELVNKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHAL 147 Query: 119 TIKN 122 + N Sbjct: 148 ELNN 151 >gi|330993962|ref|ZP_08317892.1| Blue-light-activated protein [Gluconacetobacter sp. SXCC-1] gi|329758908|gb|EGG75422.1| Blue-light-activated protein [Gluconacetobacter sp. SXCC-1] Length = 661 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +++ +D+ +R + L G++VV +GA A + + P L++ D++MP M G+ Sbjct: 547 VMVVDDEPGVRAVTVGFLRARGHDVVEYASGADAVRAMEQGLGPIDLVIMDVMMPGMGGL 606 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E L P L+V+++TG+A P +A V+ KPF DL ++R++ Sbjct: 607 ETVHHLQALRPGLRVLYLTGYANAGALPAG----SANVMHKPFTRADLAAHIDRIM 658 >gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 224 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD +R L AL + G+ V SC G A D VR +++ D+++P +DGIE+ Sbjct: 4 ILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRTRRPEIVILDVMLPGIDGIEV 63 Query: 65 ARRATELDPDLKVMFITGFA 84 RR ++D L V+ +T Sbjct: 64 CRRIRKID-SLPVILLTALG 82 >gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|91201762|emb|CAJ74822.1| Conserved Hypothetical Protein similar to sigma 54 response regulator [Candidatus Kuenenia stuttgartiensis] Length = 457 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 69/117 (58%), Gaps = 4/117 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 ++L+ ED+D R+ L L + G EV + ++G A++ ++++ F ++++DI + + G+ Sbjct: 5 RVLIVEDEDIYRKILCNTLREHGIEVQATDSGEEAWELIKQQRFPVIISDIRLSGNISGM 64 Query: 63 ELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R A EL DP ++ IT F + + ++ ++KPF + D++ ++R++ Sbjct: 65 DLLRDAKELYDPS--ILMITAFGEIEMAVEAMRLGAFSYITKPFEVEDILANLDRMM 119 >gi|145220457|ref|YP_001131166.1| response regulator receiver protein [Prosthecochloris vibrioformis DSM 265] gi|145206621|gb|ABP37664.1| response regulator receiver protein [Chlorobium phaeovibrioides DSM 265] Length = 120 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 8/111 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 IL+ +DD +R+F+ L + G++V+ +G + + E + +L++TD++MPE +GIE Sbjct: 3 ILVIDDDPAVRKFICTTLKREGHQVIEAGDGVTGIRMLNENKAITLMITDLIMPEKEGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD-----SNAPKNAKVLSKPFHLRD 109 + PDLK++ I+G V P+ ++A L KPF +++ Sbjct: 63 TIMEVRKSHPDLKIIAISGGGKVG--PENYLVLADALGADATLKKPFSVQE 111 >gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005] gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes] gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005] gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2 [Streptococcus pyogenes] gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes] gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes] gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes] gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes] gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes] gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes] gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes] gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes] gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes] gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes] gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes] gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes] gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes] gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes] gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes] gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes] gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes] gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes] gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes] gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes] gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes] gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes] gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes] gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes] gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes] gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes] gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes] gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes] gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes] gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes] gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|295687869|ref|YP_003591562.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] gi|295429772|gb|ADG08944.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] Length = 121 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D +R + AL GY V NGA DK F L++TD+ MP MDG+ + Sbjct: 4 ILTVDDSASIRAAIKIALSSEGYNVTEAANGAEGLDKASAGGFDLIVTDLNMPVMDGLTM 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA + ++F+T + + ++ A L+KPF LV V ++L Sbjct: 64 IRQLRARPAGAGVPIIFLTTESDADVKAEAKAAGATGWLTKPFEPDQLVRVVKKVL 119 >gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635] gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635] Length = 244 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AYD E ++ +L D+++PEMD Sbjct: 4 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 64 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 120 >gi|254506849|ref|ZP_05118988.1| FlaM [Vibrio parahaemolyticus 16] gi|219550134|gb|EED27120.1| FlaM [Vibrio parahaemolyticus 16] Length = 468 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + ++ A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADSAEDALVKLKSNTVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRNIKQHWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|23013751|ref|ZP_00053613.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 238 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++I + +D+ D+R L + L GY+V +GA A +R EP L + D+ +P+MDG Sbjct: 4 KKRIYVIDDEPDIRALLRQVLEGYGYQVTPLASGALARQAIRREPPDLCIVDLGLPDMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L R E D V+ +TG V+ + KPF R+LV VN ++ Sbjct: 64 LTLVRELWE-DVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVI 119 >gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 48/81 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ ED++D+ F+++ L + G+ + G A V E ++L DI++P++D Sbjct: 1 MGAKILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPDID 60 Query: 61 GIELARRATELDPDLKVMFIT 81 G E+ +R + P++ ++ +T Sbjct: 61 GFEICKRVSRQHPEISIIMVT 81 >gi|325507525|gb|ADZ19161.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 121 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +K+L+ +D +RR L L G+EVV NG K +E S++ DI M M Sbjct: 1 MGEKVLIVDDAAFIRRTLKMMLEANGFEVVDEAENGIIGLAKYKEHNPSIVTMDITMDGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGIE + + DP KV+ IT ++ + + KPF L+ +N++L Sbjct: 61 DGIETLKAILKYDPKAKVVMITAMGQESMVKRAIISGAKSFIVKPFKQEQLIETINKVLA 120 Query: 120 I 120 + Sbjct: 121 V 121 >gi|300868141|ref|ZP_07112775.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300333876|emb|CBN57955.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1055 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D + R ++ L G+ V NG D+VRE +++TD+VMP+MDG Sbjct: 839 RKILIVDDRWENRSVIVNLLKPIGFIVAEAANGLEGLDRVRELSPDVIITDLVMPKMDGF 898 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLT 119 +L RR E P+ + + + +A D +A L KP + DL + + L Sbjct: 899 QLVRRLRE-SPEFREIVVIVSSASVFETDQYNSLDAGADAFLPKPVQISDLFGLLEQFLG 957 Query: 120 I 120 I Sbjct: 958 I 958 >gi|262198125|ref|YP_003269334.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262081472|gb|ACY17441.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 317 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+A+DD + R + L K GYEV + +G AY++ P LL+TD++MP +D Sbjct: 8 MPPRILVADDDAWILRMVTTVLKKRGYEVDTAPDGEQAYERALSNPPDLLITDVMMPNVD 67 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G L ++ E D+ V+F+T AL+ D + ++ L KPF +L Sbjct: 68 GWTLVKQMREHPSLCDVPVIFLT-----ALSADDDRIHGFRLGADDYLPKPFRFEELDLR 122 Query: 114 VNRLL 118 V R L Sbjct: 123 VARTL 127 >gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GYE+V +NG + + + L+L DI++PE++G+E Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR D+ ++ +T AV ++KPF + +L+ + R++ Sbjct: 63 VLRRLRR-TSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|160878654|ref|YP_001557622.1| two component AraC family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427320|gb|ABX40883.1| two component transcriptional regulator, AraC family [Clostridium phytofermentans ISDg] Length = 543 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +I++A+D++D+R L + + ++G E + + NG A V+E S+++TDI MP + Sbjct: 3 QIIIADDEEDVREILARNINQSGKEFQVIGTAENGVDALRLVKELNPSIVITDICMPVLG 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G+EL + + DP +K + I+G + + A + L KPF Sbjct: 63 GLELIKSIQDFDPSIKTVVISGHDEFSYAKKAMALGVTEYLLKPF 107 >gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232] gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVTRR 67 >gi|88800782|ref|ZP_01116339.1| two-component response regulator PilR [Reinekea sp. MED297] gi|88776488|gb|EAR07706.1| two-component response regulator PilR [Reinekea sp. MED297] Length = 455 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 63/118 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+ +D+ D+R L L + G + S ++ SAY ++ + F L+LTD+ +P+ +G+ Sbjct: 5 QHVLVIDDEPDIRELLEITLMRMGLKSSSASDVHSAYATIQNDHFDLILTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ R E P+ + IT ++ L +S +SKP + L N +N+ L + Sbjct: 65 DIVRYVAESHPNTPIAVITAHGSMDLAIESLKSGAFDFVSKPIDIHKLRNLINQALKV 122 >gi|315920019|ref|ZP_07916259.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693894|gb|EFS30729.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1427 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1171 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1230 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1282 Query: 114 VNRLL 118 V RL+ Sbjct: 1283 VFRLI 1287 >gi|298528974|ref|ZP_07016377.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510410|gb|EFI34313.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 714 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED D R ++ L +AG+ V+ ++G A ++ P L+L DI MP MDGI+ Sbjct: 462 ILVAEDQDLPRMYVRHILEQAGHRVIEAHDGIQAVEEALNNPLDLVLMDIQMPGMDGIQA 521 Query: 65 ARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 +RR + L P I A A+ D +A + LSKP H + L+ +VN Sbjct: 522 SRRIRDALAPQKPA--IIALTAYAMQTDRQNFLDAGMDDHLSKPVHPKLLLAKVN 574 >gi|320354404|ref|YP_004195743.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122906|gb|ADW18452.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1251 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + ILL EDD + L GY V+ + A ++ ++P L LTD+VMPEM Sbjct: 1129 ETILLVEDDPTLLDMSTMMLHHLGYTVLPAATPSEAL-RLAQDPSARIDLFLTDVVMPEM 1187 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA R + P ++ +F++G+ + + + + KPF L++L ++ +L Sbjct: 1188 NGRELAERLQTVRPAMRHLFMSGYTSNVIAHRGILDEGLNFIQKPFSLQELATKIRTVL 1246 >gi|312602229|ref|YP_004022074.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI 454] gi|312169543|emb|CBW76555.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454] Length = 826 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ + + L G+ ++ A D +R + F +LLTDI++P M GIE Sbjct: 716 RILLVDDNAAATEAVREILSMQGHVTIAAGTAEEALDAIRRDRFDVLLTDIMLPGMSGIE 775 Query: 64 LARRATELDPDLKVMFIT----------GFAAVALNPDSNAPKNAKVLSKP 104 LA+R+ ++ L+V+F + GFA AL A + VL +P Sbjct: 776 LAQRSVDVQRSLRVIFTSGNDVPCDCDLGFAWEALRKPYTAEQLCAVLGRP 826 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD ++ + + L GY V+ +N A +R +LL+D+VMP + Sbjct: 535 HETILVVEDDQAVQATVAETLMGLGYRVLRADNADQALALIRSGVHVDVLLSDVVMPGSI 594 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ELAR A L P LK++F +G+ A+ ++ + ++L KP+ L + +L Sbjct: 595 RSLELARVALRLRPRLKIVFTSGYTKDAIEDNARLNNSVELLRKPYSREQLAARLRAVL 653 >gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVTRR 67 >gi|282897268|ref|ZP_06305270.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9] gi|281197920|gb|EFA72814.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9] Length = 1032 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 67/117 (57%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +R L Y+ ++ +NG A Y + +++ S++L DI+MP++DG Sbjct: 906 ILIVDDEPQIRDVTRMILETHNYDTLTASNGMEAIAIYGQYKQD-ISVVLMDIMMPKIDG 964 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I R +++P +K++ +G + + P+S+ K VL KP+ DL++ ++ ++ Sbjct: 965 IATIRSMKKINPLVKIIACSGISTIEAIPESDNTKIQGVLLKPYSASDLLSSISMVI 1021 >gi|194015024|ref|ZP_03053641.1| chemotaxis protein CheY [Bacillus pumilus ATCC 7061] gi|194014050|gb|EDW23615.1| chemotaxis protein CheY [Bacillus pumilus ATCC 7061] Length = 120 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M K+L+ +D MR + L K G++VV NGA A +K +E L+ DI MPEM Sbjct: 1 MATKVLIVDDAAFMRMMIKDILVKNGFDVVGEAENGAQAVEKFKETSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + ++D K++ + ++ D+ + KPF ++ +N+ L Sbjct: 61 DGITALKEIKQIDASAKIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTL 119 >gi|261407970|ref|YP_003244211.1| response regulator receiver protein [Paenibacillus sp. Y412MC10] gi|315648125|ref|ZP_07901226.1| response regulator receiver protein [Paenibacillus vortex V453] gi|329929323|ref|ZP_08283076.1| chemotaxis protein CheY [Paenibacillus sp. HGF5] gi|261284433|gb|ACX66404.1| response regulator receiver protein [Paenibacillus sp. Y412MC10] gi|315276771|gb|EFU40114.1| response regulator receiver protein [Paenibacillus vortex V453] gi|328936692|gb|EGG33135.1| chemotaxis protein CheY [Paenibacillus sp. HGF5] Length = 121 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K G+EVV +GA A +K +E L+ DI MPEM Sbjct: 1 MANRILIVDDAAFMRMMIRDILVKNGFEVVGEAQDGAQAIEKFKELRPDLITMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++D + KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 61 DGIAALKEIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQSDRVIEAINKTLG 120 Query: 120 I 120 + Sbjct: 121 V 121 >gi|28899025|ref|NP_798630.1| FlaM [Vibrio parahaemolyticus RIMD 2210633] gi|153836939|ref|ZP_01989606.1| two-component response regulator [Vibrio parahaemolyticus AQ3810] gi|260365229|ref|ZP_05777786.1| two-component response regulator [Vibrio parahaemolyticus K5030] gi|260878779|ref|ZP_05891134.1| two-component response regulator [Vibrio parahaemolyticus AN-5034] gi|260897374|ref|ZP_05905870.1| two-component response regulator [Vibrio parahaemolyticus Peru-466] gi|260899933|ref|ZP_05908328.1| two-component response regulator [Vibrio parahaemolyticus AQ4037] gi|6806924|gb|AAF28395.1| FlaM [Vibrio parahaemolyticus] gi|28807244|dbj|BAC60514.1| FlaM [Vibrio parahaemolyticus RIMD 2210633] gi|149749712|gb|EDM60457.1| two-component response regulator [Vibrio parahaemolyticus AQ3810] gi|308088273|gb|EFO37968.1| two-component response regulator [Vibrio parahaemolyticus Peru-466] gi|308094180|gb|EFO43875.1| two-component response regulator [Vibrio parahaemolyticus AN-5034] gi|308107407|gb|EFO44947.1| two-component response regulator [Vibrio parahaemolyticus AQ4037] gi|308115458|gb|EFO52998.1| two-component response regulator [Vibrio parahaemolyticus K5030] gi|328474438|gb|EGF45243.1| FlaM [Vibrio parahaemolyticus 10329] Length = 469 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + ++ A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADSAEDALVKLKSNAVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R IK Sbjct: 63 LALLRNIKQNWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPIK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|47570808|ref|ZP_00241364.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|47552525|gb|EAL11020.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 162 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|311278781|ref|YP_003941012.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308747976|gb|ADO47728.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 224 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 6/110 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V + ++G +A ++ E ++L + DI MP +DG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQGGFAVDAVSDGRAADHLLQSEKYALAVLDIGMPGLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 + +R L V+ +T +AVA D NA L KPF L +L Sbjct: 62 VVQRLRRRGQTLPVLLLTARSAVA---DRVVGLNAGADDYLPKPFELEEL 108 >gi|284162475|ref|YP_003401098.1| response regulator receiver protein [Archaeoglobus profundus DSM 5631] gi|284012472|gb|ADB58425.1| response regulator receiver protein [Archaeoglobus profundus DSM 5631] Length = 121 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR+ L L G+++V NG A + ++ L++ DIVMPEM+GI Sbjct: 3 RVLIVDDTAFMRKLLRNILFSGGFDIVGEAENGKQAVEMYKQLKPDLVMLDIVMPEMNGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + ++DP+ KV+ T + + + KPF + ++ E R+L Sbjct: 63 EALKAIKQIDPNAKVIMCTAVGQEKIVKAAIKLGAKGYIVKPFQAQKVIEEAKRVL 118 >gi|260171706|ref|ZP_05758118.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1398 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1142 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1201 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1253 Query: 114 VNRLL 118 V RL+ Sbjct: 1254 VFRLI 1258 >gi|222106573|ref|YP_002547364.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] gi|221737752|gb|ACM38648.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] Length = 1036 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ +L+ EDD+ +R ++ L GY V+ + +SA + P +L TD++MP + Sbjct: 773 SETVLVVEDDEAVRETVVALLADLGYRVLKAVDASSALSVIESGIPIDILFTDVIMPGTL 832 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR+A E P++ V+F +G+ ++ ++LSKP+ L + +L Sbjct: 833 KSPELARKARERLPNIAVLFTSGYTENSIVHGGKLDAGVELLSKPYTKEALARKFRHVL 891 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R + L AG+ V+ + A + +L+TD+ +P M G +L Sbjct: 920 VLLVEDDALIRMDTAEILQDAGFVVIDVGSAEQAMAALETLAIDVLVTDVNLPGMSGRDL 979 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A R ++ P ++F TG A+ + +A+VL+KP+ LV+ V Sbjct: 980 AARTRQIRPAAGIVFATGDASCVRD-----EADARVLTKPYGADQLVSTV 1024 >gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L K GY+V + +NG K ++E L++ D++MPEMDGIE Sbjct: 7 KILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEKPHLIILDVMMPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + ++ P+LK IT A + A +A ++KP + L+++V LL Sbjct: 67 ACEQIRKV-PELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALL 123 >gi|108763676|ref|YP_631615.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108467556|gb|ABF92741.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 466 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D ++MR + + LG A Y+V + +G A ++ +PF +++TDI MP DG E+ Sbjct: 7 VLVVDDKENMRHLITRILGDA-YQVRTAEDGGRALSLIQTQPFDVVVTDIRMPGADGFEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + + P +V+ +T +A+V ++ L KPF Sbjct: 66 LKAVKQHAPTTEVILMTAYASVPKAVEAIKEGAYDYLPKPF 106 >gi|94969631|ref|YP_591679.1| two component, sigma54 specific, Fis family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551681|gb|ABF41605.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Koribacter versatilis Ellin345] Length = 459 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 48/83 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R L K + GYEV + A +V E+ + L L DI M DG+E Sbjct: 7 KLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMRGTDGVE 66 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L R+ EL P L V+ +TG+A+V Sbjct: 67 LQRKLHELVPGLIVIMMTGYASV 89 >gi|312880920|ref|ZP_07740720.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310784211|gb|EFQ24609.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 840 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMD 60 + ILL ED+ + + L GY V++ A E S LL+TD+VMP M+ Sbjct: 721 ETILLVEDEVPILSLENRTLEALGYRVLAAETPEKALTLAAEHDGSIHLLVTDVVMPGMN 780 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ELA L+P +K +F++G+ A + + + L KPF + DL +V +L Sbjct: 781 GRELAENLWALEPGMKCLFMSGYTADIIARQGILDEEVQFLPKPFSMNDLAVKVREIL 838 >gi|302185564|ref|ZP_07262237.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae 642] Length = 471 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 55/116 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD Sbjct: 1 MPINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVGR 116 >gi|295086722|emb|CBK68245.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1455 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1196 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1254 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1255 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1307 Query: 114 VNRLL 118 V RL+ Sbjct: 1308 VFRLI 1312 >gi|260770516|ref|ZP_05879449.1| sensor histidine kinase CqsS [Vibrio furnissii CIP 102972] gi|260615854|gb|EEX41040.1| sensor histidine kinase CqsS [Vibrio furnissii CIP 102972] Length = 683 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 38/64 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L K GYEVV N+G A D + F L+L DI MP +DGI Sbjct: 565 RRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGI 624 Query: 63 ELAR 66 E R Sbjct: 625 EATR 628 >gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 238 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ ED+ ++R L +L AG+EV + G++A E LL+ D+++P+MDG Sbjct: 6 DATLLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E D + V+F+T +V ++KPF L ++V + +L Sbjct: 66 FTITRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAIL 122 >gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3] Length = 228 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVTRR 67 >gi|67904122|ref|XP_682317.1| hypothetical protein AN9048.2 [Aspergillus nidulans FGSC A4] gi|40745224|gb|EAA64380.1| hypothetical protein AN9048.2 [Aspergillus nidulans FGSC A4] gi|259486499|tpe|CBF84393.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4] Length = 1109 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 7/114 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 K+L+ +D++ + L + + K GY+ + NG A+ K +E P FS++L DI MP MDG Sbjct: 988 KVLIVDDNEINLKVLARLMSKLGYQHTTATNGLVAFTKYKESPNSFSMVLMDISMPVMDG 1047 Query: 62 IELAR--RATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I+ R R+ E + L KV +TG + A+ ++ + L KP L L Sbjct: 1048 IDATRNIRSYEWEKQLSSVKVFAVTGIGSAAMQHEALMAGVDEYLVKPLSLGQL 1101 >gi|146340438|ref|YP_001205486.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146193244|emb|CAL77260.1| putative sensor histidine kinase with a CHASE3 and a response regulator receiver domain; peptide signal [Bradyrhizobium sp. ORS278] Length = 761 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 ++ I + EDD ++ F++ L GY+ ++ + G A K+ +PF LL TD++MP + Sbjct: 625 DETIFIVEDDLLVQDFVVAQLQSLGYKTMTASTGVEALAKIESGQPFDLLFTDVIMPGGV 684 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +G ELA P KV++ +G+ A+ + +L+KP+ +L V Sbjct: 685 NGKELAEETLRQRPGTKVLYTSGYTDNAMVEHGRIDHASLLLTKPYRKSELAQMV 739 >gi|89892998|ref|YP_516485.1| hypothetical protein DSY0252 [Desulfitobacterium hafniense Y51] gi|219666267|ref|YP_002456702.1| Fis family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332446|dbj|BAE82041.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536527|gb|ACL18266.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfitobacterium hafniense DCB-2] Length = 461 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 60/117 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ I++ +D+ DM + + + GY+ + + A +++ L++TDI MP+ DG Sbjct: 4 DRHIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMPQCDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ +A P +V+ ITG+A+V + LSKPF + L +N+ L Sbjct: 64 FEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKAL 120 >gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1343 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 45/65 (69%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ D+R++L + LG + Y +++ NG A V+E+ L+LTD++MP MDG+ Sbjct: 1097 ENILIVEDNTDIRQYLCEELGNS-YHILTAENGEEALSIVKEQEIDLILTDVMMPVMDGL 1155 Query: 63 ELARR 67 +L ++ Sbjct: 1156 QLCKQ 1160 >gi|229917890|ref|YP_002886536.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469319|gb|ACQ71091.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 224 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 47/82 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD+ + L+ L AGY V+ +G A D + EP LL+TD++MP +DG EL Sbjct: 4 ILLAEDDETLGGLLVDYLTVAGYRVLHAKDGEEALDWLDREPIDLLITDVMMPRLDGREL 63 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + + L V+ +T A+ Sbjct: 64 TGQLRDAGYTLPVLMLTVLDAM 85 >gi|197119599|ref|YP_002140026.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088959|gb|ACH40230.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 914 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 ILL +D++ + LG+ GYEVV+ +G+SA R P ++ D+ MP+MDG + Sbjct: 799 ILLVDDEETICDIGAMMLGQLGYEVVTALSGSSALQTYRSRPDIKFVILDLTMPQMDGEQ 858 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LDP++KV+ +G++A + + KP+ ++ L+ + R Sbjct: 859 TFDALRALDPEVKVIMSSGYSAQEVTGKFTGTGLLDFIQKPYSMQALLEVMKR 911 >gi|189424886|ref|YP_001952063.1| response regulator receiver protein [Geobacter lovleyi SZ] gi|189421145|gb|ACD95543.1| response regulator receiver protein [Geobacter lovleyi SZ] Length = 130 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD +R L L G+ V+ NG ++ +E L++TDIVMPE DG E Sbjct: 3 RILLIDDDPQVRTVLKGFLQIGGHRVIEAENGRQGQRRLLDEQVDLVITDIVMPESDGFE 62 Query: 64 LARRATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + D LK++ ITG L + +KVL+KP L+ V Sbjct: 63 VIMSSARKDSSLKIIAITGGSPNLTQQTLLTIAQRMPVSKVLAKPVTCEVLLTAVQ 118 >gi|312958392|ref|ZP_07772913.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens WH6] gi|311287456|gb|EFQ66016.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens WH6] Length = 458 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +V+ + ++ + ++++DI MP MDG+E Sbjct: 8 QVVLIDDDPHLRQALCQTLDLAGLKVLPLGEASGLTARLTRDWPGVVVSDIRMPGMDGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L DPDL V+ ITG V L + L KPF L++ V R L ++ Sbjct: 68 LLAELHGQDPDLPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALR 125 >gi|158521375|ref|YP_001529245.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510201|gb|ABW67168.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 485 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DDD +R+ K L + GY V +G + + VR++ F L++ D+ MP M G+E Sbjct: 4 ILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSGLEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E+D L V+ +T + ++ + KPF + +++ + + L Sbjct: 64 FARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQAL 117 >gi|46580004|ref|YP_010812.1| chemotaxis protein CheY [Desulfovibrio vulgaris str. Hildenborough] gi|120602585|ref|YP_966985.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|46449420|gb|AAS96071.1| chemotaxis protein CheY [Desulfovibrio vulgaris str. Hildenborough] gi|120562814|gb|ABM28558.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|311233998|gb|ADP86852.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1] Length = 120 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ I+ +D +R+ + L AGYEV+ ++G A K+ P +++TD+ MP MD Sbjct: 1 MSKLIMSVDDSASIRQMVGFTLRNAGYEVIEASDGKDALGKL-SGPVKMVITDLNMPNMD 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RAT + V+ +T + A + A + KPF L+ V +LL Sbjct: 60 GIELIRRIRATPAYKFIPVVMLTTESQAARKQEGKAAGATGWIVKPFKPEQLLAVVQKLL 119 >gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 222 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+ILL ED+ D+ R + L ++GY V+S +G + RE L++ D+ +P+ D Sbjct: 1 MEQRILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGLPDFD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G E+ARR + + ++ +T AV + ++KPFH +LV V Sbjct: 61 GAEIARRLRKTSA-VPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV 113 >gi|282880107|ref|ZP_06288827.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305980|gb|EFA98020.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] Length = 527 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L +D+ D+ R I L K GYEVV+ +NGA A + +E+ F L+L D +MP + G Sbjct: 3 NGLLLWVDDEIDLLRAHILFLEKKGYEVVTVSNGADAIEACQEQTFDLVLLDEMMPGLTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E ++ E+ P V+ +T + + K A L KP VN LLT+K Sbjct: 63 LETLQQIKEIHPATPVVMVTKSEEENIMEQAIGSKIADYLIKP------VNPNQILLTLK 116 >gi|237752400|ref|ZP_04582880.1| signal-transduction regulatory protein [Helicobacter winghamensis ATCC BAA-430] gi|229375889|gb|EEO25980.1| signal-transduction regulatory protein [Helicobacter winghamensis ATCC BAA-430] Length = 433 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+ + EDD +MR+ L ALG+ +EVVS + A K+ ++ F L++TDI MP+MDGI Sbjct: 2 KLAVVEDDINMRKSLEIALGEYKEFEVVSFKSAKDALKKL-DDSFDLVITDINMPQMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E R L+ + + ITG A + DS L+KPF + LV + R Sbjct: 61 EFLRT---LNGRYEALIITGNATLNKAIDSIRLGVKDFLTKPFEIETLVEAIYR 111 >gi|229587850|ref|YP_002869969.1| putative sigma-54 interactive two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229359716|emb|CAY46564.1| putative sigma-54 interactive two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 458 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +V++ ++ + ++++DI MP MDG+E Sbjct: 8 QVVLIDDDPHLRQALCQTLDLAGLKVLTLGEATGLTARLSRDWPGVVVSDIRMPGMDGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L DPDL V+ ITG V L + L KPF L++ V R L ++ Sbjct: 68 LLAELHGQDPDLPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALR 125 >gi|218779714|ref|YP_002431032.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761098|gb|ACL03564.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1432 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 + +LL ED+ + L ++GY V++ ++ A + V E + LL+TD++MP M Sbjct: 1312 GETVLLVEDEKAIISMAKSMLERSGYRVLTASSPQKALNLVDEFQDGIQLLITDVIMPGM 1371 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA P LKV+F++G+ A + ++ L KPF L +V + L Sbjct: 1372 NGKDLAEELKSRHPSLKVLFMSGYTADLIARHGVLEEDVHFLEKPFSQNKLAEQVRKAL 1430 >gi|153953747|ref|YP_001394512.1| hypothetical protein CKL_1122 [Clostridium kluyveri DSM 555] gi|219854365|ref|YP_002471487.1| hypothetical protein CKR_1022 [Clostridium kluyveri NBRC 12016] gi|146346628|gb|EDK33164.1| CheY [Clostridium kluyveri DSM 555] gi|219568089|dbj|BAH06073.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 120 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D MR L L + G+EVV NG SA K ++ ++ DI MP+MDG Sbjct: 2 RKILIVDDASFMRISLRTMLQRNGFEVVGEAENGISAILKYKQFNPDIVTLDITMPDMDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 IE+ + + D + K++ IT + S + KPF L+ +N+++ I Sbjct: 62 IEVLKEIKKYDSEAKIVMITAMGQKTMVKKSILSGAKSFIVKPFKEEQLIETLNKVMFI 120 >gi|197117068|ref|YP_002137495.1| GAF/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086428|gb|ACH37699.1| sensor histidine kinase response regulator, GAF and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 770 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL +D++D+ K L + GY+V + +G A + R P F L++TD MP M G Sbjct: 645 ILFVDDEEDVVFGCKKMLERLGYQVTTGADGLQALELFRGNPEGFDLVVTDQTMPRMTGT 704 Query: 63 ELARRATELDPDLKVMFITGFAAVA----LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL+R ++ PD+ V+ TG A A L ++ ++ KP + + + R+L Sbjct: 705 ELSRELLQIRPDIPVILCTGLGAAAEKAQLKEEAEQVGIRELALKPLDREEFASTIRRVL 764 >gi|15612348|ref|NP_224001.1| putative transcriptional regulator [Helicobacter pylori J99] gi|15612508|ref|NP_224161.1| putative transcriptional regulator [Helicobacter pylori J99] gi|4156082|gb|AAD07036.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99] gi|4165002|gb|AAD06868.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99] Length = 213 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG A++++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAHERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|226942530|ref|YP_002797603.1| C4 dicarboxylate two-component response regulator, sigma54-dependent DctD2 [Azotobacter vinelandii DJ] gi|226717457|gb|ACO76628.1| C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2 [Azotobacter vinelandii DJ] Length = 461 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R+ L + L AG V + + ++ + ++++DI MP +DG+E Sbjct: 8 QVLLIDDDPHLRQALSQTLDLAGLGVCALADAQGLAGRIDRDWPGVVVSDIRMPRIDGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + LD +L V+ ITG V L + L KPF DL++ V R L ++ Sbjct: 68 LLGQLKALDAELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASEDLLDSVRRALDLRR 126 >gi|322418878|ref|YP_004198101.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320125265|gb|ADW12825.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 460 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 61/116 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++++L ++++ + R + L GY V + A + + + LL+TDI MP MDG+ Sbjct: 4 KRVMLVDNEEGLCRMMEAVLSDNGYAVSAFTRSFEAAESFQAGQWDLLVTDIKMPGMDGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ DP + V+ +T +A V ++ + +L+KPF +L+ V L Sbjct: 64 ELLQKVKLKDPTIPVIMVTAYATVEMSIQALRKGAYDMLTKPFEPEELLYRVKNAL 119 >gi|284037861|ref|YP_003387791.1| histidine kinase [Spirosoma linguale DSM 74] gi|283817154|gb|ADB38992.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1311 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ ++R F+ L ++ Y V++ NG +++VR E ++++DI+MP++DG L Sbjct: 1067 ILVVEDNIELRDFIANELSQS-YRVLTARNGQEGWEQVRSELPDVVISDIMMPDLDGYAL 1125 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + L + V+ +T A+ + L+KPF + +L + LLT Sbjct: 1126 TRQLKTNTLTNHIAVILLTARASQESRMNGLMQGADDYLTKPFSISELKQRICNLLT 1182 >gi|157692313|ref|YP_001486775.1| response regulator CheY [Bacillus pumilus SAFR-032] gi|157681071|gb|ABV62215.1| response regulator CheY [Bacillus pumilus SAFR-032] Length = 120 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M K+L+ +D MR + L K G++VV NGA A +K +E L+ DI MPEM Sbjct: 1 MATKVLIVDDAAFMRMMIKDILVKNGFDVVGEAENGAQAVEKYKETSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + ++D K++ + ++ D+ + KPF ++ +N+ L Sbjct: 61 DGITALKEIKQIDASAKIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTL 119 >gi|308535234|ref|YP_002138198.2| CHASE/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|308052579|gb|ACH38402.2| sensor histidine kinase response regulator, CHASE and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 848 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMP 57 ++ +LL ED++ + K L + G+ V+ A + E+P L+LTD+VMP Sbjct: 726 LSGTVLLVEDEEMLLWLATKLLEELGFSVIQAPGPREAI-AICEDPGLNLDLILTDVVMP 784 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EM+G E+ + + PD KV+F++G+ + + + + + KP LR+L ++ ++ Sbjct: 785 EMNGSEMVAKIKQTRPDQKVLFMSGYTSDDVVQRGILEQGMQYIQKPLDLRELGEKIGQI 844 Query: 118 L 118 L Sbjct: 845 L 845 >gi|150376318|ref|YP_001312914.1| two component, sigma54 specific, Fis family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030865|gb|ABR62981.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium medicae WSM419] Length = 452 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 58/112 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+R+ + + L AG+ V + A A ++ + ++++DI MP MDG+ L Sbjct: 7 VFLIDDDRDLRKAMQQTLELAGFTVSPFASAAEALGELTADFAGVVISDIRMPGMDGLTL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R+ LDPDL ++ +TG + + + ++KPF LV R Sbjct: 67 FRKVLALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARR 118 >gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 406 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +G A R+ ++ DI++P+MDG+E Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGLE 219 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR PD+ V+F+T AV ++KPF L +LV + L+ Sbjct: 220 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLM 274 >gi|85715512|ref|ZP_01046493.1| helix-turn-helix, Fis-type / Nitrogen regulation protein NR(I) [Nitrobacter sp. Nb-311A] gi|85697707|gb|EAQ35583.1| helix-turn-helix, Fis-type / Nitrogen regulation protein NR(I) [Nitrobacter sp. Nb-311A] Length = 499 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 62/114 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY+V N A+ + V + +++TD+VMP+ +L Sbjct: 26 ILVADDDGAIRTVLNQALSRAGYDVRLTGNAATLWRWVSQGEGDIVITDVVMPDETAFDL 85 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 86 LPRIKKIRPNLPVIVMSAQNTFMTAVRASERGAYEYLPKPFDLKELIAIVGRAL 139 >gi|260222414|emb|CBA31954.1| Chemotaxis protein cheY [Curvibacter putative symbiont of Hydra magnipapillata] Length = 134 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D MR+ + L AGY+VV +G AY+K + + F L+LTD MP +DG+ L Sbjct: 18 ILAVDDSPSMRKMVSFTLTGAGYQVVEAVDGQDAYEKAQTQTFDLVLTDQNMPRLDGLGL 77 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 R+ E P K ++ +T ++ + A L KPF L D++ +V R Sbjct: 78 TRKLRE-HPQFKTTPILMLTTESSDLMKQAGRAAGATGWLVKPFDPAKLLDVIKKVIR 134 >gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC 700633] gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC 700633] Length = 232 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY V ++G + + + L++TDI+MP+MD Sbjct: 1 MEKTILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELFKNKSIDLIITDIMMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + L PD +FIT + + ++KPF R+LV VN + Sbjct: 61 GYDFISEVQYLSPDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIF 118 >gi|237802166|ref|ZP_04590627.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025023|gb|EGI05079.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. oryzae str. 1_6] Length = 461 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPQASGLAERIERDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHQQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|298529549|ref|ZP_07016952.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] gi|298510985|gb|EFI34888.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] Length = 458 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%) Query: 6 LLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DD+ R ++KA+ + G++V+ NG D + ++ ++L DI MP MDG+++ Sbjct: 10 LLVVDDESGHRMMVKAVMQDQGFKVMEAGNGLQCLDMLEQQHIDVVLLDIKMPGMDGMQV 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R L P ++V+ +T F +V D+ L+KP + +L Sbjct: 70 LERIHRLHPGVQVVMLTAFGSVGSAVDAMKQGAFDYLTKPADIDEL 115 >gi|218129732|ref|ZP_03458536.1| hypothetical protein BACEGG_01311 [Bacteroides eggerthii DSM 20697] gi|217988144|gb|EEC54468.1| hypothetical protein BACEGG_01311 [Bacteroides eggerthii DSM 20697] Length = 1364 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 46/67 (68%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDD++RR++ + LG+ + + C NG A+ ++ ++ L+++DI+MPEMDG+ Sbjct: 1106 RVLIVEDDDEIRRYICRELGR-DFHMQECCNGKEAFTQILKKAPDLIISDIMMPEMDGMT 1164 Query: 64 LARRATE 70 L + + Sbjct: 1165 LCSKVKQ 1171 >gi|186471683|ref|YP_001863001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184197992|gb|ACC75955.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 789 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 + +L+ EDD ++ +I L GY V+ +N A + LL TD+VMP + Sbjct: 528 TETVLVVEDDKTVQGTVIAMLADLGYNVLKADNADQAIAVLSSGVHVDLLFTDVVMPGTL 587 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+AR A ++ P L+V+F +G+ A+ ++LSKP+ ++L +V ++L Sbjct: 588 KSPEMARTAVQIQPHLRVLFTSGYTQNAIFHGGRLDPGVELLSKPYSHKELAYKVRQIL 646 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 46/79 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ R + + L G+ + + +A D V FS+LLTD+ +P+M GIE Sbjct: 674 EVLVVDDNEPTRDAVRELLLMLGHRPTTVPSAQAALDAVANASFSVLLTDVNLPDMSGIE 733 Query: 64 LARRATELDPDLKVMFITG 82 LA R L D+ V+F +G Sbjct: 734 LANRVVLLHRDISVIFASG 752 >gi|317050582|ref|YP_004111698.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] gi|316945666|gb|ADU65142.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] Length = 460 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + + L+ + AGY+V VR + L+++D+ +P M G+E Sbjct: 10 RILLVEDDESLSQLLLDEISDAGYQVFREMTAEQGLRMVRAQAVDLVISDLRLPGMTGLE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 D + ITGF ++ + L+KP HL L+ V R+L Sbjct: 70 FLEALQRQDTPPACIVITGFGTISQAVQALKAGADDFLTKPLHLEHLMLSVRRVL 124 >gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] Length = 242 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 76 CRRIRE-KHSLPIIFLSA 92 >gi|121535617|ref|ZP_01667423.1| response regulator receiver protein [Thermosinus carboxydivorans Nor1] gi|121305787|gb|EAX46723.1| response regulator receiver protein [Thermosinus carboxydivorans Nor1] Length = 144 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR L K L G+EV+ ++G A R+ L DI MP+MDGI Sbjct: 13 KILICDDSAFMRMMLKKVLVDHGHEVIGEASDGRQAVQMYRQYRPDLTTMDITMPKMDGI 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R E DP +++ +T ++ D+ + + KPF +V +N++L Sbjct: 73 EAVRLIHEEDPLARIIMVTAVGQRSIITDALKAGASDFIVKPFVPSQVVEAINKVL 128 >gi|15893413|ref|NP_346762.1| protein cheY-like protein [Clostridium acetobutylicum ATCC 824] gi|15022943|gb|AAK78102.1|AE007524_7 protein cheY homolog [Clostridium acetobutylicum ATCC 824] Length = 121 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +K+L+ +D +RR L L G+EVV NG K +E S++ DI M M Sbjct: 1 MGEKVLIVDDAAFIRRTLKMMLEANGFEVVDEAENGIIGLAKYKEHNPSIVTMDITMDGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGIE + + DP KV+ IT ++ + + KPF L+ +N++L Sbjct: 61 DGIEALKAILKYDPKAKVVMITAMGQESMVKRAIISGAKSFIVKPFKQEQLIETINKVLA 120 Query: 120 I 120 + Sbjct: 121 V 121 >gi|330940719|gb|EGH43727.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. pisi str. 1704B] Length = 471 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R L + L AGY+ + + A PFSL+++D+ MP MDG +L Sbjct: 5 VLLVEDDRSLREALGETLDLAGYDYQAVGSAEEALVAAEATPFSLVISDVNMPGMDGHQL 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 65 LSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|197303422|ref|ZP_03168461.1| hypothetical protein RUMLAC_02144 [Ruminococcus lactaris ATCC 29176] gi|197297420|gb|EDY31981.1| hypothetical protein RUMLAC_02144 [Ruminococcus lactaris ATCC 29176] Length = 220 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 59/109 (54%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 ED+ ++ + K+L AGYEV +C +G A D V E + L++ D+ +P MDG+++ R Sbjct: 2 EDEKELCDTVAKSLYSAGYEVDTCYDGEEALDYVLTEEYDLIVLDLNLPGMDGMDILREL 61 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + KV+ ++ + +A + + KPFHL++L + L Sbjct: 62 RMKNEETKVLILSARSQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 110 >gi|220921676|ref|YP_002496977.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219946282|gb|ACL56674.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 701 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ EDD +RR + +G+ GY+ ++ +G +A + ++L TD+VMP +DG Sbjct: 579 RTVLVVEDDAMVRRASAETIGELGYQTLTAADGQAALACLETNRDVAVLFTDVVMPGLDG 638 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAP---KNAKVLSKPFHLRDL 110 LA A P LKV+F TG + N P VL KPF + DL Sbjct: 639 PTLAAEARRRRPGLKVVFATGHGR---DEGRNGPLPGPGETVLRKPFTIEDL 687 >gi|24987500|pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of Sinorhizobium Meliloti Dctd gi|24987501|pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of Sinorhizobium Meliloti Dctd gi|24987502|pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The Receiver Domain Of Sinorhizobium Meliloti Dctd Length = 155 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 57/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+R+ + + L AG+ V S + A + + ++++DI MP MDG+ L Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R+ LDPDL ++ +TG + + + ++KPF LV R Sbjct: 66 FRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARR 117 >gi|328954538|ref|YP_004371872.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328454862|gb|AEB10691.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 461 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +R L + L + GYEV SC +G +A + + + + ++LTD+ MP+ DG+E+ Sbjct: 6 ILVVDDSSAVRDNLSELLTEEGYEVDSCPDGEAALNLLSQRTYEVVLTDLSMPKCDGMEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E P + ITG+ + D+ L KP ++L+ V R L Sbjct: 66 LKYLVEHFPGTSCIIITGYGTIQNAVDAMRLGAYDYLCKPVESQELLVVVARAL 119 >gi|323698590|ref|ZP_08110502.1| response regulator receiver protein [Desulfovibrio sp. ND132] gi|323458522|gb|EGB14387.1| response regulator receiver protein [Desulfovibrio desulfuricans ND132] Length = 699 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 58/116 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILL +D+ R L GY+V + NG A + EP +++++D+ M MDG Sbjct: 132 NPRILLVDDELIARENLTIVFEADGYDVEAVGNGLEAVAAMEREPANIVVSDLKMEGMDG 191 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +EL + PD KV+ ITG+A V D+ + L KP +L L V L Sbjct: 192 MELLQVLRRRWPDTKVIMITGYATVKTAVDAMRRGADQYLGKPVNLTKLRRYVAEL 247 >gi|254509654|ref|ZP_05121721.1| C4-dicarboxylate transport transcriptional regulatory protein [Rhodobacteraceae bacterium KLH11] gi|221533365|gb|EEE36353.1| C4-dicarboxylate transport transcriptional regulatory protein [Rhodobacteraceae bacterium KLH11] Length = 409 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 49/82 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+LL +DD +R L + L A YE VS + +A D +R + ++++DI MP D Sbjct: 1 MIRKVLLVDDDAAVREALAQTLELAEYEPVSAGSFVAAKDHIRRDFAGVIVSDIRMPGRD 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G L A E+DP+L V+ +TG Sbjct: 61 GFHLLAYAREIDPELPVILLTG 82 >gi|163852238|ref|YP_001640281.1| nitrogen regulation protein NR(I) [Methylobacterium extorquens PA1] gi|218530997|ref|YP_002421813.1| Fis family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240139570|ref|YP_002964046.1| two-component sigma-54 specific nitrogen transcriptional regulator, Fis subfamily; N-terminal response receiver [Methylobacterium extorquens AM1] gi|254561984|ref|YP_003069079.1| two-component sigma-54 specific nitrogen transcriptional regulator [Methylobacterium extorquens DM4] gi|163663843|gb|ABY31210.1| nitrogen regulation protein NR(I) [Methylobacterium extorquens PA1] gi|218523300|gb|ACK83885.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Methylobacterium chloromethanicum CM4] gi|240009543|gb|ACS40769.1| two-component sigma-54 specific nitrogen transcriptional regulator, Fis subfamily; N-terminal response receiver [Methylobacterium extorquens AM1] gi|254269262|emb|CAX25228.1| two-component sigma-54 specific nitrogen transcriptional regulator, Fis subfamily; N-terminal response receiver [Methylobacterium extorquens DM4] Length = 490 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 66/118 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N I++A+DD +R L +AL +AGYEV + +N ++ + V + L++TD++MP+ + Sbjct: 3 NGHIIVADDDAAIRTVLNQALSRAGYEVRTTSNCSTLWRWVAQGEGDLVITDVMMPDENV 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + P+L ++ ++ ++ + L KPF L++L+ V R L+ Sbjct: 63 FDLLPRIKRVRPELPIIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELIAIVGRALS 120 >gi|145220456|ref|YP_001131165.1| PAS/PAC sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145206620|gb|ABP37663.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 515 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N IL +D+ + + + G+ + ++ A ++ E P LL+TD+ MP M Sbjct: 388 NGNILFVDDEQATVTMMKTLIPQLGFTIEPFSSPQKALERYHENPGNIDLLITDLTMPGM 447 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIELA +L+PDL V+ ITG+ + L N ++ L KP +L +N ++ Sbjct: 448 TGIELAAETHKLNPDLPVILITGYGKDIELTTPINRYGISRFLKKPVRRSELATTINEVI 507 Query: 119 TIKN 122 + N Sbjct: 508 SPHN 511 >gi|308274436|emb|CBX31035.1| hypothetical protein N47_E45470 [uncultured Desulfobacterium sp.] Length = 501 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 3/111 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R + + L + G +V + G A D + E S++L D+ MP +DG+++ Sbjct: 10 ILVVDDEEGIRAGVERILVRMGLKVFTAERGDIALDILDREDISIVLLDLKMPGLDGMQV 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 R +PD+ V+ ITG+A V ++ ++KPF HLR +VN Sbjct: 70 LMRIRGKNPDILVIVITGYATVETAIEAMKQGAYDFVAKPFEPEHLRIIVN 120 >gi|326791528|ref|YP_004309349.1| response regulator receiver protein [Clostridium lentocellum DSM 5427] gi|326542292|gb|ADZ84151.1| response regulator receiver protein [Clostridium lentocellum DSM 5427] Length = 120 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR + L K GYEV NG A +K +E L+L DI MPEM Sbjct: 1 MAKRVLIVDDAAFMRMMIKDILSKNGYEVAGEAENGLRAVEKYKELTPDLVLMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +GI+ + LDP K++ + A+ +S + KPF ++ V +++ Sbjct: 61 NGIDAVKNIKALDPGAKIVMCSAMGQQAMVIESIQAGARDFIVKPFQADRVLEAVRKVV 119 >gi|237714196|ref|ZP_04544677.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262408426|ref|ZP_06084973.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229445688|gb|EEO51479.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262353978|gb|EEZ03071.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1430 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1171 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1230 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1282 Query: 114 VNRLL 118 V RL+ Sbjct: 1283 VFRLI 1287 >gi|156340231|ref|XP_001620390.1| hypothetical protein NEMVEDRAFT_v1g223166 [Nematostella vectensis] gi|156205250|gb|EDO28290.1| predicted protein [Nematostella vectensis] Length = 472 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R+ L + L AG +V S + ++ + ++++DI MP +DG++ Sbjct: 7 QVLLIDDDPHLRQALSQTLDLAGLKVSSLADAHGVAARIERDWPGVVVSDIRMPGIDGLQ 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ E DP+L V+ ITG V L + L KPF DL++ V R L ++ Sbjct: 67 LLQQLREQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDDLLDSVRRALALR 124 >gi|153007094|ref|YP_001381419.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030667|gb|ABS28435.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 463 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D ++MR+ K L GY+V + +GASA V + +++TDI MP DG E Sbjct: 5 RVLVADDKENMRKLFAKILAD-GYDVETAQDGASALALVASRAYDVVVTDIRMPGADGFE 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L P +V+ +TG+A VA + L KPF Sbjct: 64 LLAAVKARAPTTEVVMVTGYATVADAVRAMKQGAFDYLEKPF 105 >gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1681 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + ++ L +AG V N+G A D++ ++ F +L D MP +DG E Sbjct: 1344 EVLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIDRIEQQYFDCVLMDCQMPVLDGYE 1403 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR EL P + I A A++ D + A ++KP H++DL + R +T Sbjct: 1404 ATRRIREL-PQFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMARWITP 1462 Query: 121 K 121 K Sbjct: 1463 K 1463 >gi|125974309|ref|YP_001038219.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|256003472|ref|ZP_05428462.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 2360] gi|281418364|ref|ZP_06249384.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum JW20] gi|125714534|gb|ABN53026.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|255992496|gb|EEU02588.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 2360] gi|281409766|gb|EFB40024.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum JW20] gi|316941457|gb|ADU75491.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 1313] Length = 310 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D + M + + L GYEVV+ +NG + VR E L+L D+VMP+MDG Sbjct: 4 KKILVIDDTEFMTKLISDVLMNEGYEVVTASNGRQGIEMVRIEKPDLVLLDVVMPDMDGF 63 Query: 63 ELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 E+ R R E + + ++ +T + L D ++KPF+ R+LV+ Sbjct: 64 EVCRILREDEGNNLMPIIMLTAQDNEDDKLTGLELGADD-------YITKPFNTRELVSR 116 Query: 114 VNRLL 118 V L Sbjct: 117 VRNTL 121 >gi|320324588|gb|EFW80665.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328960|gb|EFW84959.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890761|gb|EGH23422.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 676 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPGLKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 674 >gi|270291713|ref|ZP_06197929.1| DNA-binding response regulator DltR [Streptococcus sp. M143] gi|270279798|gb|EFA25639.1| DNA-binding response regulator DltR [Streptococcus sp. M143] Length = 224 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R + AL + GY V S NG A K + L++ DI+MP GIE Sbjct: 2 KILLAEDETQLNRVITVALEREGYTVDSVFNGQDAVKKATTNHYHLMIFDIMMPIKTGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + +L V+ +T A V D+ A L+KPF L++L+ Sbjct: 62 ALKEIRQLGNTTHVIMLTAMAEVDDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|254517005|ref|ZP_05129063.1| two component, sigma54 specific, transcriptional regulator, Fis family [gamma proteobacterium NOR5-3] gi|219674510|gb|EED30878.1| two component, sigma54 specific, transcriptional regulator, Fis family [gamma proteobacterium NOR5-3] Length = 445 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDD +R L + GY V+ NG A ++ E F ++++D+ M EMDG Sbjct: 6 RVLIVEDDDTLRDALCDTIEFGGYRAVAAGNGREALSRMDAESFDMIISDVQMDEMDGHG 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L R P++ + IT +V + L KPF + L++ V R+ Sbjct: 66 LLREVRNRKPEMPFVMITAHGSVRDAVSAMRDGATDYLLKPFEAQVLLDMVARM 119 >gi|325996811|gb|ADZ52216.1| putative transcriptional regulator [Helicobacter pylori 2018] Length = 186 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG A++++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAHERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L L K GY V++C +G A + +E L + D++MP + Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL R E DL V+ +T V L+KPF +L+ + LL Sbjct: 61 GWELCREIREF-YDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALL 117 >gi|239813972|ref|YP_002942882.1| two component, sigma54 specific, Fis family transcriptional regulator [Variovorax paradoxus S110] gi|239800549|gb|ACS17616.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Variovorax paradoxus S110] Length = 462 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD DM R L L AGY+V + + +A ++ E L+L+D+ +P DG++ Sbjct: 7 RLLVVDDDPDMLRLLSMRLSSAGYQVTAVTSAETALTQLEIEHPQLVLSDVRLPGRDGLQ 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + P L V+ +T + ++ A L+KP+ R+L++++ + L + Sbjct: 67 LFDEIRKRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDGRELLDKIAQALAL 123 >gi|205375305|ref|ZP_03228095.1| stage 0 sporulation initiation phosphotransferase F [Bacillus coahuilensis m4-4] Length = 122 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D +R L + L K GY+ NG A + V + L+L D+ +P MD Sbjct: 1 MKEKILIVDDQFGIRILLNEVLQKEGYQTFQAANGVQALEIVDKHTPDLVLLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE+ +R + D++V+ +T + + + ++ +KPF + ++ V + Sbjct: 61 GIEILKRMKQKIEDIRVIIMTAYGELDMIQEAKQLGAITHFAKPFDIDEIRQAVKQ 116 >gi|168703719|ref|ZP_02735996.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 902 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++L+ +D++D+R F K L AG+EV +GA+ + P F+L+L D+ MP+M Sbjct: 783 RRLLVVDDEEDVRVFTRKVLEHAGFEVTVAADGAAGVEAFAAAPYQFALVLLDLTMPKMG 842 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G E R ++V+ +GFAA A L KPF DL+ Sbjct: 843 GAEAFREMRRHRSGVRVVLTSGFAAEEATSGFEGKGLAGFLRKPFRTEDLL 893 >gi|220928378|ref|YP_002505287.1| AraC family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998706|gb|ACL75307.1| two component transcriptional regulator, AraC family [Clostridium cellulolyticum H10] Length = 539 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K ++ +D+D +R+ L K + + V ++G A+ V++ L+LTD++MP MD Sbjct: 3 KAIIVDDEDLVRQGLKKHFDWSDHNIEIVADLSDGQKAFQYVKDNHVDLVLTDVLMPYMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI LA+ EL P++K++FI+G V+ ++ + + K L +L + V+R++ Sbjct: 63 GITLAKNLRELYPEIKIIFISGHDDVSYLKNALKVEAVDYILKSIDLDELKDTVSRVVNT 122 Query: 121 KN 122 N Sbjct: 123 MN 124 >gi|219849745|ref|YP_002464178.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219544004|gb|ACL25742.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 123 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD +++ L AL AGY+V+ +G + + SL+L+DI+MP MDG+E Sbjct: 8 IFIIDDDLNLQSILSIALRNAGYDVILARDGIEGLRLLNQCSPSLVLSDIMMPNMDGVET 67 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +R E D + ++ +T + D A + A +L KPF ++ L++ ++R L+ Sbjct: 68 FQRIKERLQDDGIPIILMTALSRKPWFADLEA-EGAVILQKPFEVQHLIDIIDRTLS 123 >gi|253700033|ref|YP_003021222.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251774883|gb|ACT17464.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 478 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 55/103 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++ MR L KAL K G+ V +G A ++E + L L DI MP M G+EL Sbjct: 6 ILVADDEESMRWVLSKALRKKGFNVELARDGNEALRLIKENVYDLALLDIKMPGMTGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 R E DL V+ +T A++ ++ L+KPF L Sbjct: 66 LDRVKEERSDLFVVIMTAEASMKNAVEAMKRGAYDYLTKPFDL 108 >gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 1299 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++LA+D+ DMR ++ + LG+ YEV + +G +A + +R L+LTD++MP MDG Sbjct: 646 RVVLADDNPDMRDYVRRLLGQ-DYEVEAVGDGGAALEAMRRRRPDLVLTDVMMPGMDGFG 704 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L +A DP D+ V+ ++ A + + LSKPF R+L+ V Sbjct: 705 LL-QAMRSDPRLRDIPVVMLSARAGEEAKVEGLDAGASDYLSKPFSARELLARV 757 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 9/116 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ F + L GY V +G A + + P F L+L+D+VMP MDG+ Sbjct: 1174 VLVVEDNPEIGEFSTQLLEDLGYRTVLARSGIDALRMLDDNPKRFDLVLSDVVMPGMDGV 1233 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + P + ++ +G++ V + ++ KP+ V+E++R+L Sbjct: 1234 TLGQEIRRRLPTIPIVLNSGYSDVLAD---GGRHGFSLIHKPYS----VDELSRVL 1282 >gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241] gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241] Length = 232 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|330985287|gb|EGH83390.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 676 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY + A + + LL++D+ +P M+G Sbjct: 558 ETVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNG 617 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A +L P LKV+FITG+A A ++++KPF L ++V ++ Sbjct: 618 RQLAEIARQLRPGLKVLFITGYAEHAAVRGGFLDTGMQLITKPFAFDHLTSKVREMI 674 >gi|325279188|ref|YP_004251730.1| response regulator receiver sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324310997|gb|ADY31550.1| response regulator receiver sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 374 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 6 LLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DD L+KAL GK GY ++ NNG A + +R E L+L D++MP MDG E+ Sbjct: 10 LLVVDDVQTNVLLLKALLGKEGYGILVANNGQEALEVIRNENPDLILLDVMMPGMDGFEV 69 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 A R + E ++ ++F+T + +SKPF +L+ + L++ Sbjct: 70 AERLKSEEFRCEIPIIFLTALDDTQSIVNGFKLGVGDFISKPFRKEELMVRIKHQLSL 127 >gi|299148477|ref|ZP_07041539.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298513238|gb|EFI37125.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1430 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1171 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1230 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1282 Query: 114 VNRLL 118 V RL+ Sbjct: 1283 VFRLI 1287 >gi|298482118|ref|ZP_07000306.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298271675|gb|EFI13248.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1430 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1171 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1230 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1282 Query: 114 VNRLL 118 V RL+ Sbjct: 1283 VFRLI 1287 >gi|294643100|ref|ZP_06720934.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294808952|ref|ZP_06767676.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292641559|gb|EFF59743.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294443833|gb|EFG12576.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1401 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1142 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1201 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1253 Query: 114 VNRLL 118 V RL+ Sbjct: 1254 VFRLI 1258 >gi|293369330|ref|ZP_06615915.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292635497|gb|EFF54004.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1401 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1142 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1201 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1253 Query: 114 VNRLL 118 V RL+ Sbjct: 1254 VFRLI 1258 >gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 942 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+A+D + R ++ LG G+++ NGA A +K+ +L+L D+VMP D Sbjct: 723 LRKTILVADDVAENRAVMVDMLGPLGFDMAQAGNGAEALEKIESLHPALVLMDVVMPGTD 782 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNR 116 G+E RR ++ P+ + + I +A A D+ A NA L+KP L++ V Sbjct: 783 GLETTRRLRQM-PEFRDLPIVAVSARASRTDAAQSLEAGANA-FLAKPIEFGQLLSVVAA 840 Query: 117 LLTIK 121 LL ++ Sbjct: 841 LLNVE 845 >gi|237721244|ref|ZP_04551725.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449040|gb|EEO54831.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1430 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1171 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1230 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1282 Query: 114 VNRLL 118 V RL+ Sbjct: 1283 VFRLI 1287 >gi|86750706|ref|YP_487202.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573734|gb|ABD08291.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 926 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMP-EM 59 ++ ILL EDD+ +R+F I L GY ++ C+ A+ + R F LL TD++MP + Sbjct: 787 SETILLVEDDELVRKFAIAQLAGLGYRTIAMCDGQAALREAERGTAFDLLFTDVIMPGGL 846 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA + P ++V++ +G+ A+ A +L+KP+ DL V L Sbjct: 847 NGPQLADAIARVRP-VRVLYTSGYTENAIVHHDRLDSGALLLTKPYRRSDLARMVRAAL 904 >gi|315187538|gb|EFU21294.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 900 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED ++ + L +AG EV NG A +KV + + L+L D+ MP MDG+ Sbjct: 654 RRILVVEDYMPNQKIVSLVLSEAGAEVEVAVNGREALEKVAQGRYDLVLMDVHMPVMDGL 713 Query: 63 ELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 E RR L DL I G A A D + A VL KP +++V EV RLL Sbjct: 714 EATRRIRALVGGDLP---IVGLTADAYREDVRRCREAGMDGVLIKPIRRKEMVEEVRRLL 770 >gi|289678811|ref|ZP_06499701.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 127 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M Sbjct: 5 ERTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGM 64 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 65 NGRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 123 >gi|261366404|ref|ZP_05979287.1| phosphate regulon transcriptional regulatory protein Phob [Subdoligranulum variabile DSM 15176] gi|282571664|gb|EFB77199.1| phosphate regulon transcriptional regulatory protein Phob [Subdoligranulum variabile DSM 15176] Length = 230 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A D +R+ F L+L D+ +P+ +G Sbjct: 2 KQILIVEDDSFLNKMLTYNLTADGYGVTSALNARTAADAIRQREFDLVLLDVNLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL R PD ++F+T A + +S+ + +V ++KPF LR L ++ + Sbjct: 62 ELCRLIKPQHPDTIIIFLT-----ANDQESDQIRGYEVGAVDYITKPFVLRALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|222100205|ref|YP_002534773.1| Response regulator [Thermotoga neapolitana DSM 4359] gi|221572595|gb|ACM23407.1| Response regulator [Thermotoga neapolitana DSM 4359] Length = 117 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ +MR L + L + GYEV + NG A K + L++ DI MP M+ Sbjct: 1 MKKKILVVDDEPNMRELLREELEEEGYEVEAAENGEEALKKFSSGDYDLVILDIEMPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E+A + E+ D +++ +T ++ + S A V K F+ +L +V +LL+ Sbjct: 61 GLEVAGKIREMKKDARIILLTAYSHYRSDLSSWAADEYVV--KSFNFDELKEKVKKLLS 117 >gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50] gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50] Length = 226 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 60/114 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K+L GYEV +C +G A + + E + L++ D+ +P MDG+E Sbjct: 2 RLLIVEDEKQICDMVAKSLYGVGYEVDTCYDGEEALECILTEDYDLIVLDLNLPGMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + + KV+ ++ +A + + KPFH+++L + L Sbjct: 62 ILRELRRENEETKVIILSARGQIADKVEGLDAGANDYMEKPFHIKELEARIRSL 115 >gi|197119178|ref|YP_002139605.1| nitrogen fixation master sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088538|gb|ACH39809.1| nitrogen fixation master sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 478 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 55/103 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++ MR L KAL K G+ V +G A ++E + L L DI MP M G+EL Sbjct: 6 ILVADDEESMRWVLSKALRKKGFNVELARDGNEALRLIKENVYDLALLDIKMPGMTGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 R E DL V+ +T A++ ++ L+KPF L Sbjct: 66 LDRVKEERSDLFVVIMTAEASMKNAVEAMKRGAYDYLTKPFDL 108 >gi|77463369|ref|YP_352873.1| nitrogen metabolism transcriptional regulator, NtrC [Rhodobacter sphaeroides 2.4.1] gi|126462224|ref|YP_001043338.1| two component, sigma54 specific, Fis family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332558246|ref|ZP_08412568.1| two component, sigma54 specific, Fis family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77387787|gb|ABA78972.1| nitrogen metabolism transcriptional regulator, NtrC [Rhodobacter sphaeroides 2.4.1] gi|126103888|gb|ABN76566.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodobacter sphaeroides ATCC 17029] gi|332275958|gb|EGJ21273.1| two component, sigma54 specific, Fis family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 455 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLMTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E R ++L P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLEALPRISKLRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRSARALDM 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|330898374|gb|EGH29793.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 417 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 296 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 355 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 356 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 413 >gi|221639221|ref|YP_002525483.1| NtrC protein [Rhodobacter sphaeroides KD131] gi|221160002|gb|ACM00982.1| NtrC protein [Rhodobacter sphaeroides KD131] Length = 456 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 2 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLMTLMRWVEEGKGDLVISDVVMPDGN 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E R ++L P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 62 GLEALPRISKLRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRSARALDM 121 Query: 121 KN 122 K Sbjct: 122 KR 123 >gi|153806265|ref|ZP_01958933.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185] gi|149130942|gb|EDM22148.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185] Length = 1330 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+IL+ ED+D++R +L+ +L Y V +C NG A +E L+L+DI+MPEM G Sbjct: 1062 SQRILIVEDNDELRSYLVSSLSSM-YHVQACGNGREALIIAKEFWPDLILSDIMMPEMRG 1120 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + D++ I AL ++N + + KPF++R L + Sbjct: 1121 DEL---CVAIKNDIETSHIPVLLLTALGDENNILDGMSIGADAYIVKPFNVRILKASIAN 1177 Query: 117 LL 118 LL Sbjct: 1178 LL 1179 >gi|331017006|gb|EGH97062.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 471 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 56/116 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD Sbjct: 1 MPINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A+ L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAAEYLVKPFEPKALIALVAR 116 >gi|330972433|gb|EGH72499.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aceris str. M302273PT] Length = 470 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R L + L AGY+ + + A PFSL+++D+ MP MDG +L Sbjct: 5 VLLVEDDRSLREALGETLELAGYDYQAVGSAEEALVAAEATPFSLVISDVNMPGMDGHQL 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 65 LSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342] gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342] Length = 242 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S +NG A + + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 76 CRRIRE-KHSLPIIFLSA 92 >gi|5689981|emb|CAB51867.1| NifR1 protein [Rhodobacter sphaeroides] Length = 455 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLMTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E R ++L P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLEALPRISKLRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRSARALDM 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|330941213|gb|EGH44081.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. pisi str. 1704B] gi|330977501|gb|EGH77447.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 445 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT V ++ ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVN 117 >gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379] gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379] Length = 223 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ D+ R + K L + Y V SC +G A D V + L++TDI+MP +DG E Sbjct: 2 KILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R E + V+ +T + + DS A + KPF +L + L+ Sbjct: 62 FIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGAD---DYIVKPFEFDELFARIRVLM 116 >gi|222148573|ref|YP_002549530.1| nitrogen regulation protein NR(I) [Agrobacterium vitis S4] gi|221735559|gb|ACM36522.1| nitrogen regulation protein NR(I) [Agrobacterium vitis S4] Length = 483 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWISAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 61 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIRASEKGAYDYLPKPFDLTELIAIIGRAL 118 >gi|75675637|ref|YP_318058.1| helix-turn-helix, Fis-type / nitrogen regulation protein NR(I) [Nitrobacter winogradskyi Nb-255] gi|74420507|gb|ABA04706.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Nitrobacter winogradskyi Nb-255] Length = 479 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R + +AL +AGY+V N A+ + V + +++TD+VMP+ + +L Sbjct: 6 ILVADDDGAIRTVINQALSRAGYDVRLTGNAATLWRWVSQGEGDIVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ P+L V+ ++ ++ + L KPF L++L+ V R L Sbjct: 66 LPRIKKIRPNLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELIAIVGRALA 120 >gi|218513126|ref|ZP_03509966.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Rhizobium etli 8C-3] Length = 246 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 59/112 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+RR + L AG+ V + + +A D++ + ++TDI MPE+DG++L Sbjct: 7 VALIDDDGDLRRATTQTLELAGFAVSAYDGAKAALDELAADFAGPVVTDIRMPEIDGLQL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++D DL V+ +TG + + + ++KPF LV V R Sbjct: 67 FTMLKDMDADLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFPADRLVQSVRR 118 >gi|198274559|ref|ZP_03207091.1| hypothetical protein BACPLE_00711 [Bacteroides plebeius DSM 17135] gi|198272613|gb|EDY96882.1| hypothetical protein BACPLE_00711 [Bacteroides plebeius DSM 17135] Length = 1346 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+D +R+ L + G YEV + +G A +KV E ++L+D++MP M GIEL Sbjct: 1098 ILIVEDNDSIRQMLAELFGGM-YEVTTAVDGQDALEKVEESSPHIILSDVLMPRMSGIEL 1156 Query: 65 ARRAT-ELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ LD + V+ +T + N + ++KPF R LV N L+ Sbjct: 1157 VKQLKGNLDTCHIPVVLLTARTEIEQNLEGLKIGADDYITKPFDSRLLVFRCNNLV 1212 >gi|253699663|ref|YP_003020852.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774513|gb|ACT17094.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1040 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 ILL +D++ + LG+ GYEVV+ +G+ A R P L++ D+ MP+MDG + Sbjct: 925 ILLVDDEETICDIGAMMLGQLGYEVVTALSGSGALQAYRSRPDIKLVILDLTMPQMDGEQ 984 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LDP++KV+ +G++A + + KP+ ++ L+ + R Sbjct: 985 TFVALKALDPEVKVIMSSGYSAQEVTGKFTGTGLLDFIQKPYSMQALLEVMKR 1037 >gi|7407152|gb|AAF61932.1| sigma-54 activator protein Act1 [Myxococcus xanthus] Length = 562 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ +R FL + LG AGY+V +G A + + F +L D+VMPEM G+E+ Sbjct: 15 VLVVDDEEAVRTFLSELLGSAGYQVRCAASGTQALEMLSGGSFDAVLLDVVMPEMSGLEV 74 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR + V+ ++ A + + L+KPF +L + + R L + Sbjct: 75 LRRYQSMGGGAPVIVLSALAGADDAVRAMKMGASDYLAKPFGNDELQDALARALGTR 131 >gi|116624106|ref|YP_826262.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227268|gb|ABJ85977.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 514 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 12/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDGI 62 +LL EDD D+R L ++GY ++ NG A ++ E P LL+TD++MP M G Sbjct: 391 VLLVEDDADVRALLSTYFDRSGYHLLEAENGEEALKVSELYEGPIDLLITDMMMPVMSGP 450 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 L P+ +V+ I+G L PD A ++ K L KPF +L+ V + Sbjct: 451 HLVHAIAMDRPETRVLMISG-----LPPDPTALEDMKTQGVQFLQKPFRSAELLLRVKEI 505 Query: 118 L 118 L Sbjct: 506 L 506 >gi|330966032|gb|EGH66292.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 461 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 EVVLIDDDSHLRQALRQTLDLAGLNVLSLPEASGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHEQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|330901401|gb|EGH32820.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. japonica str. M301072PT] Length = 445 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT V ++ ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVN 117 >gi|331092120|ref|ZP_08340951.1| hypothetical protein HMPREF9477_01594 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402321|gb|EGG81892.1| hypothetical protein HMPREF9477_01594 [Lachnospiraceae bacterium 2_1_46FAA] Length = 534 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++A+D++++RR LI+ + G++VV NG A + V + LLLTD+ MP + G Sbjct: 4 VIIADDEEEIRRSLIRKIDWESIGFKVVGEAGNGEDALELVEKLEPDLLLTDVKMPFISG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 IELAR+ E+ P +++ F++G+ + + + KP D+ E+ + Sbjct: 64 IELARQVREIRPTIQIAFLSGYDDFSYAQQAIQYNIVSYMLKPISSGDITKELKNI 119 >gi|322418768|ref|YP_004197991.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125155|gb|ADW12715.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 850 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPE 58 ++ +LL ED++ + K L + G +V+ + A + RE ++LTD+VMPE Sbjct: 725 LSGTVLLVEDEEMLLWLTTKLLEELGLQVIQAQSPFQALELCRERGGEIDMVLTDVVMPE 784 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M+G ELA R E P++KV+F++G + + + + KP + L ++ +L Sbjct: 785 MNGRELASRIKEYRPEMKVLFMSGHTSDNVVQRGVIEADMHYIQKPLEMDRLGKKIREVL 844 >gi|317014758|gb|ADU82194.1| putative transcriptional regulator [Helicobacter pylori Gambia94/24] gi|317014970|gb|ADU82406.1| putative transcriptional regulator [Helicobacter pylori Gambia94/24] Length = 213 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG A++++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAHERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKRIKNDFLISTLVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] Length = 1381 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L AG+EV + +G +A D R L+++D++MP +DG++ Sbjct: 631 RVLVADDNADMREYLTRLLRSAGHEVQAVADGRAALDAARAHTPDLVVSDVMMPRLDGLQ 690 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + V+ ++ A + + L KPF +L+ V Sbjct: 691 LVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARV 743 >gi|261209871|ref|ZP_05924172.1| sigma-54 dependent response regulator [Vibrio sp. RC341] gi|260841057|gb|EEX67582.1| sigma-54 dependent response regulator [Vibrio sp. RC341] Length = 478 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|322421777|ref|YP_004201000.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320128164|gb|ADW15724.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1047 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPE 58 ++ IL+ ED+ +R + + L GY V+ + A ++ +P LL+TD++MP+ Sbjct: 924 SETILVVEDEVWVREMVSEMLLSLGYRVLVASTAEEAMSVTVRLDRQP-QLLVTDVIMPK 982 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M+G +L+R+ L+P LK +F++G+ + + + L KPF L L +V +L Sbjct: 983 MNGRDLSRQLVALNPKLKTLFMSGYTSDVIARHGVINEAVHFLPKPFTLPILAAKVREVL 1042 >gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC 43184] gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC 43184] Length = 225 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 46/64 (71%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+EV N+G + ++ V++E F LL+ DI+MP+M+G++ Sbjct: 3 KILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQEDFQLLILDIIMPKMNGLQ 62 Query: 64 LARR 67 L ++ Sbjct: 63 LCKQ 66 >gi|9954994|pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region Of Dctd From Sinorhizobium Meliloti Length = 155 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 57/113 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L +DD D+R+ + + L AG+ V S + A + + ++++DI MP MDG+ Sbjct: 5 SVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R+ LDPDL ++ +TG + + + ++KPF LV R Sbjct: 65 LFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARR 117 >gi|146276556|ref|YP_001166715.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17025] gi|145554797|gb|ABP69410.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17025] Length = 129 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ ED+D++ L + + GYE +GA A ++R L+L D+++PE+ G Sbjct: 7 KRRILVVEDEDNIAIALDYLITREGYEHDRVASGAEALGRIRATHPDLVLLDVMLPEVSG 66 Query: 62 IELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + LDP D+K++ +T + A +SKPF L+ L EV RLL Sbjct: 67 YEIC-QGVRLDPTLADVKILMMTARGSAIERKKGLALGADGFISKPFELKALREEVRRLL 125 >gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] Length = 240 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP MDG E Sbjct: 12 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T A ++KPF L +++ + +L Sbjct: 72 VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAIL 126 >gi|289674864|ref|ZP_06495754.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae FF5] Length = 416 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT V ++ ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVN 117 >gi|322418166|ref|YP_004197389.1| response regulator receiver protein [Geobacter sp. M18] gi|320124553|gb|ADW12113.1| response regulator receiver protein [Geobacter sp. M18] Length = 139 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 59/109 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L +DD R LI + G++ ++ A + + F +++TD+ MP MDG Sbjct: 3 KRKVLFVDDDVQYLRLLISIVTDVGFDSCRASSAEEALALLATKRFEMMVTDLQMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +EL+ A LDPD++++ +TG + + + + VL+KP + ++ Sbjct: 63 LELSTLAKRLDPDMEIVLVTGAVSPEVLVRAATIGISTVLAKPCRVEEI 111 >gi|190574097|ref|YP_001971942.1| putative two-component system response regulator [Stenotrophomonas maltophilia K279a] gi|190012019|emb|CAQ45641.1| putative two-component system response regulator [Stenotrophomonas maltophilia K279a] Length = 119 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDG 61 ++L+ ED D+R + AL + G +V + +G A + ++ E F ++ +D+ MP M G Sbjct: 7 RVLMVEDQTDLREMIGLALRELGIDVATTADGHEAAELLKGEARFDVVFSDVSMPNGMSG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ P +++ +G+A L P P+ + L KP+ LR LV Sbjct: 67 IELSEHVAREQPQARMILSSGYARSQLPP---LPEQVEFLPKPYRLRQLVQ 114 >gi|182413097|ref|YP_001818163.1| two component, sigma54 specific, Fis family transcriptional regulator [Opitutus terrae PB90-1] gi|177840311|gb|ACB74563.1| two component, sigma54 specific, transcriptional regulator, Fis family [Opitutus terrae PB90-1] Length = 452 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 67/119 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + + +AL + G++V + N+GASA + ++ ++L++TDI MPE+DG++ Sbjct: 7 RILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMPELDGMQ 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + A D + + +T F V ++ L+KP L+ L V + L ++ Sbjct: 67 LLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKALELQT 125 >gi|317485000|ref|ZP_07943883.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923738|gb|EFV44941.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 637 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 57/105 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ +R + +L AGY V++ +G A E P +++TDI MP M+ Sbjct: 1 MKETILLVDDEQGIRTVMGLSLRDAGYNVITVASGEEALQLFAERPIPIVITDIRMPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G++L + L P+ +V+ I+G A + + + + ++KP Sbjct: 61 GLDLLKHIKILAPETEVILISGHADLEMAIQGLKLEASDFITKPI 105 >gi|262404481|ref|ZP_06081036.1| sigma-54 dependent response regulator [Vibrio sp. RC586] gi|262349513|gb|EEY98651.1| sigma-54 dependent response regulator [Vibrio sp. RC586] Length = 478 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|159897381|ref|YP_001543628.1| GAF sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890420|gb|ABX03500.1| GAF sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1055 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R + K L +EV +G A + E+ F L+++D+ MP M+G Sbjct: 928 QRILVVDDEPAVRNIVAKVLRHDQHEVTLAGSGEEALRWIDEQAFDLIISDLGMPGMNGW 987 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLLTIK 121 ++ +A + P++ + ITG+ + D A + VL KPF ++ L + V L+ + Sbjct: 988 DVLEQARQRRPNIIAILITGW-GYQHDADYAAARGVDSVLGKPFEMQTLRSTVADLIQAR 1046 Query: 122 N 122 N Sbjct: 1047 N 1047 >gi|5052340|gb|AAD38510.1|AF133262_2 histidine protein kinase-response regulator hybrid protein CvgSY [Pseudomonas syringae pv. syringae] Length = 671 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 550 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 609 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 610 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 667 >gi|83592734|ref|YP_426486.1| response regulator receiver domain-containing protein [Rhodospirillum rubrum ATCC 11170] gi|83575648|gb|ABC22199.1| Response regulator receiver domain protein (CheY) [Rhodospirillum rubrum ATCC 11170] Length = 123 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + L AGY VV +GA + R+ L++TD+ MP M+ Sbjct: 2 MAKTILSVDDSASIRQMVKLTLTGAGYTVVQAADGAEGLARARDMAVDLVVTDLNMPVMN 61 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G++L R +L P K ++F+T + A+ ++ ++KPF LV V ++ Sbjct: 62 GLDLIRELRKL-PTYKGVPIIFLTTESDAAMKQEAKVAGATGWITKPFQQEQLVTVVRKV 120 Query: 118 L 118 L Sbjct: 121 L 121 >gi|116624258|ref|YP_826414.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227420|gb|ABJ86129.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 856 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL EDD ++ + L AGY V+ + + A LLLTD+V+PE DG Sbjct: 740 ILLLEDDTTVQHLVSTMLKSAGYRVLPASTPSEALTICANFTVHIDLLLTDMVLPEDDGA 799 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A +A L P LK+MF++G+ + + ++ L KPF L ++V L Sbjct: 800 SVAEQAVVLRPSLKIMFMSGYTEHPVLQRPSFNRSVPFLQKPFTKAQLTSKVREAL 855 >gi|331015863|gb|EGH95919.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 660 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + I++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 539 RTIMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALRILESDARIDLLVTDVGLPGGMN 598 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 599 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 656 >gi|301382802|ref|ZP_07231220.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302134577|ref|ZP_07260567.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 660 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + I++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 539 RTIMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALRILESDARIDLLVTDVGLPGGMN 598 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 599 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 656 >gi|289624477|ref|ZP_06457431.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298487714|ref|ZP_07005755.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157806|gb|EFH98885.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330870201|gb|EGH04910.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 697 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 576 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKMLESDMRIDLLVTDVGLPGGMN 635 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 636 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMDAFASRIYEMIER 695 Query: 121 KN 122 K+ Sbjct: 696 KD 697 >gi|224373296|ref|YP_002607668.1| response regulator DrrA [Nautilia profundicola AmH] gi|223588709|gb|ACM92445.1| response regulator DrrA [Nautilia profundicola AmH] Length = 122 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +DD R+ ++K L K G+E + NG A+ + L+L DIVMP MDG Sbjct: 3 NKKVLVVDDDPINRKLIVKILSKKGFEAIEAGNGVEAFTALENNDVDLILLDIVMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRDLVNEVN 115 IE + K +I V L D + AK V+ KP +L+ + Sbjct: 63 IEFLKEIKT-----KPAYI-NLPIVILTTDDSKKMEAKDLGADDVIIKPVSAIELLETIE 116 Query: 116 RLL 118 RL Sbjct: 117 RLF 119 >gi|146277528|ref|YP_001167687.1| two component, sigma54 specific, Fis family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555769|gb|ABP70382.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodobacter sphaeroides ATCC 17025] Length = 455 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLMTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E R ++L P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLEALPRISKLRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRSARALDM 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1238 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D + PF +L DI MP MDG+ Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 AR E DL ++ +T A S A ++KP L +L +N + KN Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHKN 1233 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK------VMFI 80 +EV + +GA A K+ P LLL D ++PEMDG ++ + + + ++ + Sbjct: 991 FEVDTAASGAEALYKLSRAPIDLLLLDWMIPEMDGSDVVSAIDTMVAEGRLAKRPVIIMM 1050 Query: 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 T +AA L + ++ VL KPF L +E+ Sbjct: 1051 TAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|330986412|gb|EGH84515.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 697 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 576 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKMLESDMRIDLLVTDVGLPGGMN 635 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 636 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMDAFASRIYEMIER 695 Query: 121 KN 122 K+ Sbjct: 696 KD 697 >gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 223 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ D+ R + K L K Y V SC +G A D V + L++TDI+MP++DG E Sbjct: 2 KILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEYDLIITDIMMPKIDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ V+ +T ++ L DS A + KPF +L+ + L+ Sbjct: 62 LIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGAD---DYIVKPFEFDELLARIRVLM 116 >gi|468815|emb|CAA55283.1| ntrC [Rhodobacter sphaeroides] Length = 455 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLMTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E R ++L P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLEALPRISKLRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRSARALDM 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|108762849|ref|YP_631415.1| sigma-54 activator protein ActB [Myxococcus xanthus DK 1622] gi|13752434|gb|AAK38650.1|AF350253_2 sigma-54 activator protein ActB [Myxococcus xanthus DK 1622] gi|108466729|gb|ABF91914.1| sigma-54 activator protein ActB [Myxococcus xanthus DK 1622] Length = 553 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ +R FL + LG AGY+V +G A + + F +L D+VMPEM G+E+ Sbjct: 6 VLVVDDEEAVRTFLSELLGSAGYQVRCAASGTQALEMLSGGSFDAVLLDVVMPEMSGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR + V+ ++ A + + L+KPF +L + + R L + Sbjct: 66 LRRYQSMGGGAPVIVLSALAGADDAVRAMKMGASDYLAKPFGNDELQDALARALGTR 122 >gi|116624716|ref|YP_826872.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116227878|gb|ABJ86587.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 137 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD AL AG+ + +G A D + E +L+L+DI MP MDG Sbjct: 4 ETILIVDDDPICLAIASLALQTAGFATRTAADGMEALDLLNLEQPALILSDIQMPHMDGF 63 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELARR ++ D+ ++ +T F A + + KP H L N + RLLT Sbjct: 64 ELARRTRQIPRFRDIPMVALTAFDAADTEQRARDAGFTAYMKKPVHAASLANRLRRLLT 122 >gi|90423190|ref|YP_531560.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105204|gb|ABD87241.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 926 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 1/110 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 ++ +L+ EDD +R F++ L GY+ ++ NGA ++ F LL TD++MP ++ Sbjct: 789 SETVLVVEDDAMVRNFVVTQLRSLGYKTLTAANGAETLAQIDAGATFDLLFTDVIMPGLN 848 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G +LA + P KV++ +G+ A+ +L KP+ +L Sbjct: 849 GRQLAEAVKQRRPATKVLYTSGYTENAIVHHGRLDPGVLLLPKPYRKSEL 898 >gi|194337740|ref|YP_002019534.1| response regulator receiver protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310217|gb|ACF44917.1| response regulator receiver protein [Pelodictyon phaeoclathratiforme BU-1] Length = 119 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +DD +R+F+ L + + V+ +NG S ++E P S+++TD++MPE +GI Sbjct: 2 KILVIDDDAAVRKFISMILQRKKHTVIEADNGKSGLLLLQENPDVSVMITDLIMPEKEGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPD-----SNAPKNAKVLSKPFHLRDLVNEVNRL 117 E + P +K++ I+G V+ P+ ++A L KPF ++L++ + L Sbjct: 62 ETIIEVRQHYPSIKIVAISGGGKVS--PENYLVIADALGANTTLKKPFSGQELMHAIENL 119 >gi|313673766|ref|YP_004051877.1| two component, sigma54 specific, transcriptional regulator, fis family [Calditerrivibrio nitroreducens DSM 19672] gi|312940522|gb|ADR19714.1| two component, sigma54 specific, transcriptional regulator, Fis family [Calditerrivibrio nitroreducens DSM 19672] Length = 470 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 46/86 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +DDD+MR + L + G +V + NG D + F L+++D+ MP MD Sbjct: 1 MNKKILIVDDDDNMRTAVETTLRRMGIDVTTAENGKEGLDYATNDHFDLIISDMRMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G + + KV FIT + V Sbjct: 61 GETMFKMLKSAGVTTKVCFITAYGTV 86 >gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 235 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI+L ED+ + F+ K L + GYE+ +G + V+ F L++ DI++PEM+G+ Sbjct: 2 KKIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPEMNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + + + + ++F+T + L +S L KPF +LV V LL Sbjct: 62 DVCKEIRKTNQSVPILFLTALGTSENIVLGLESGGD---DYLVKPFKFIELVARVKSLL 117 >gi|239616421|ref|YP_002939743.1| response regulator receiver protein [Kosmotoga olearia TBF 19.5.1] gi|239505252|gb|ACR78739.1| response regulator receiver protein [Kosmotoga olearia TBF 19.5.1] Length = 119 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 +KI++ +D+++MR L + LG+ G+ V++ + A D + P SL+ DI MP + Sbjct: 3 TKKIMIVDDEENMRFLLTEELGEEGFHVITAASAEEALDLFEKHPDISLVTIDIEMPGIS 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELA PDLK++ +T + + S A +A V+ K LR+ + +LL Sbjct: 63 GLELAGMLRNKKPDLKIVLLTAYTHYKQDMASWAA-DAYVV-KSTDLREFKETIKKLL 118 >gi|160886963|ref|ZP_02067966.1| hypothetical protein BACOVA_04977 [Bacteroides ovatus ATCC 8483] gi|156107374|gb|EDO09119.1| hypothetical protein BACOVA_04977 [Bacteroides ovatus ATCC 8483] Length = 1427 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1171 RKVLIIEDDNDIREFLREEIG-AYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1230 EVTKK-------LKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLAR 1282 Query: 114 VNRLL 118 V RL+ Sbjct: 1283 VFRLI 1287 >gi|119483258|ref|ZP_01618672.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC 8106] gi|119458025|gb|EAW39147.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC 8106] Length = 753 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 13/129 (10%) Query: 1 MNQKILLAEDDDDMR-RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +N ++L DD + +FL +L +A YEV+ G SA + + L++ DI MPEM Sbjct: 6 LNSGVVLVVDDYPLNLKFLCASLSRAKYEVLVAQTGESALEIAVSQQPELIVLDIRMPEM 65 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVN 112 DG E+ R +A+ + D+ V+F+T AL+ N K K+ ++KP H + ++ Sbjct: 66 DGYEVCRQLKASPVTRDIPVIFMT-----ALSETDNKVKGLKLGAADYITKPIHPEEALS 120 Query: 113 EVNRLLTIK 121 + L+++ Sbjct: 121 RIQTHLSVR 129 >gi|91202527|emb|CAJ72166.1| strongly similar to sigma 54 response regulator [Candidatus Kuenenia stuttgartiensis] Length = 456 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI++ +DD R +L + L + GY+V NG A ++ +E F ++ D+ MP MDG+ Sbjct: 4 EKIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGMDGM 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVN 115 E + + + V+ +T + + ++ + KPF + L++ VN Sbjct: 64 EALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVN 119 >gi|66046584|ref|YP_236425.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63257291|gb|AAY38387.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 646 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 525 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 584 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 585 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 642 >gi|51244877|ref|YP_064761.1| Ntr family two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875914|emb|CAG35754.1| related to two-component system sensory/regulatory protein (Ntr family) [Desulfotalea psychrophila LSv54] Length = 880 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 3/106 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL EDD + + L GY++ + ++ +AY + + P F L+++D MPEM Sbjct: 755 DEHILFIEDDQEQLETTPRILKTLGYKITTASSPNAAYKLITDAPKYFHLVVSDYDMPEM 814 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +GIELA++ ++ P + M ++G + + AP VL KP+ Sbjct: 815 NGIELAKKVEKIAPHIPFMIVSGRRNIT-EYAAKAPNVINVLMKPY 859 >gi|296273442|ref|YP_003656073.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296097616|gb|ADG93566.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 223 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL EDD + +++ L +EVVS +G AY K+ EE F LL+ D+ +P + Sbjct: 1 MKRKILLLEDDITLNETVVEYLEDNDFEVVSIYDGEEAYTKIYEEKFDLLIFDVNVPTLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL + + V+F+T ++ + KPF L++L+ V +L Sbjct: 61 GFELLENLRIDNINTPVIFMTSLNSMESFEKGFNLGCDDYIRKPFELKELLIRVESIL 118 >gi|322417765|ref|YP_004196988.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] gi|320124152|gb|ADW11712.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] Length = 357 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 61/116 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ +++L +DD + + L +G+EV C NG A +R+ P ++LTD+ MP+M Sbjct: 5 ISGRVILVDDDPYVLESVALLLSVSGFEVHPCTNGMDALGLLRQSPPDVVLTDVNMPQMS 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GI+L + + D D+ V+ +T +A + + + + KPF L+ V + Sbjct: 65 GIDLLEQIHDFDRDIPVILMTAYAELEMAVSAIKKGAFDFIIKPFKTPYLIYAVEK 120 >gi|254445907|ref|ZP_05059383.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198260215|gb|EDY84523.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 223 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 10/119 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED D+ R + +AL +A +EV +G A + VRE F L++ D+ +P DG+E Sbjct: 2 RILIVEDQADILRHVKRALERADHEVSVAIDGPEAVEVVRERRFDLIVLDLSLPGFDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + +R + +D +V+ +T + LN ++ L+KPF +++L+ V L Sbjct: 62 VMKRISPMDARPRVLMLTARGEIDDRVKGLNAGAD-----DYLTKPFDMKELLARVEAL 115 >gi|28870744|ref|NP_793363.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213968962|ref|ZP_03397102.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|28853992|gb|AAO57058.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213926261|gb|EEB59816.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 646 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + I++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 525 RTIMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALRILESDARIDLLVTDVGLPGGMN 584 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 585 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 642 >gi|330960925|gb|EGH61185.1| response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 119 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL+ EDD +R ++ L + Y V+ + SA V + LL+TD +P+M G Sbjct: 8 ILVVEDDTIVRMLIVDVLEELEYTVLEAEDATSALKLVMDSGNRIDLLMTDQGLPDMKGT 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA++ EL PDL V+F +G++ + + P + KPF + L ++V +L Sbjct: 68 ALAKKVIELRPDLPVLFASGYSE-----NIDVPPGMHSIGKPFSIDQLRDKVKSILV 119 >gi|258405014|ref|YP_003197756.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfohalobium retbaense DSM 5692] gi|257797241|gb|ACV68178.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfohalobium retbaense DSM 5692] Length = 496 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 + +L+ +D++ +R AL AGY+V+ G A + E L+++D+ MPE++ Sbjct: 10 ETVLVVDDEESLRDICQDALEDAGYKVIQAKQGREALQVLYGDTEMVDLVVSDLRMPELN 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL +R + D+ + +TG+ + +S A L KPF++ L+ +V ++L Sbjct: 70 GMELLQRIRQEQIDVDFLIMTGYGTIETAVESMKLGAADYLPKPFNISHLLLKVEKVL 127 >gi|94263456|ref|ZP_01287269.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93456186|gb|EAT06325.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 730 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 46/83 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++ +D D R L+ L GY+ G +A D + E+P +L L D+VMP MDGI Sbjct: 17 RIMVIDDRPDDRESLVALLEAHGYQATGLPGGRAALDHLTEQPANLALVDLVMPGMDGIT 76 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + + P+L V+ IT +A + Sbjct: 77 TLQELKRVAPELDVILITAYATL 99 >gi|302187056|ref|ZP_07263729.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. syringae 642] Length = 697 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 576 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 635 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 636 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 693 >gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931] gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931] Length = 234 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP MDG E Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T A ++KPF L +++ + +L Sbjct: 66 VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAIL 120 >gi|224368479|ref|YP_002602642.1| two-component hybrid sensor protein [Desulfobacterium autotrophicum HRM2] gi|223691195|gb|ACN14478.1| two-component hybrid sensor protein [Desulfobacterium autotrophicum HRM2] Length = 157 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ ++ L + G+ +NG ++++ P+ L+L DI MPEMDGI+ Sbjct: 30 KILVAEDNLVNQKVFQMMLNRHGFSATIADNGTQLIQRLKQAPYDLILMDIQMPEMDGIQ 89 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R R E + K + I A A + D NA + L+KP ++L+ + ++L Sbjct: 90 ATRIIRNAESETRCKQVAIIAMTAHATHEDEQRCLNAGMDAYLAKPVTDKELIAMIRKVL 149 >gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis] gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 1202 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ D+RR++ L AG+ V NGA ++K + +++TD++MP++ G+EL Sbjct: 847 VLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLEL 906 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R P+L+ ++ +T A + +SKPF+ R+L+ EV L +K Sbjct: 907 IRMIRS-SPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNLQALK 965 >gi|331011061|gb|EGH91117.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 471 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 56/116 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD Sbjct: 1 MSINVLLVEDDRSLREALGETLELAGYGYQAVCSAEEALVAAEAQPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|317475520|ref|ZP_07934783.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908351|gb|EFV30042.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 775 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ D+R++L + LGK Y ++ NG A V+E+ L+LTD++MP MDG+ Sbjct: 529 ESILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIVKEQEVGLILTDVMMPVMDGL 587 Query: 63 ELARR 67 +L ++ Sbjct: 588 QLCKQ 592 >gi|301064531|ref|ZP_07204927.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] gi|300441279|gb|EFK05648.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] Length = 450 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 63/115 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD ++ + + L G+++V+ ++G A + E F L L D+ + E DGI+ Sbjct: 3 RILVVDDDHNVLKVIRMRLEAEGFQIVTASDGEKAVAEATSEIFDLALVDLKLSEKDGIQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +++ +L ++ +T + + ++ + ++KPF R+L+ ++N L Sbjct: 63 LMEELHQINAELPIIILTAYGTIQSAVEAMSKGAHSYITKPFDYRELLLQINNCL 117 >gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] Length = 222 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ EDD ++ + + L GY V + N+G K +E + L++ DI+MP +D Sbjct: 1 MNSSILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIMMPNLD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G + + R T P ++F+T ALN +S+ K ++ ++KPF LV Sbjct: 61 GYGVCKMIRKTSSVP---IIFLT-----ALNQESDQLKGFEIECDDYITKPFSFNLLVKR 112 Query: 114 VNRLL 118 V +L Sbjct: 113 VEAIL 117 >gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] Length = 1206 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ D+RR++ L AG+ V NGA ++K + +++TD++MP++ G+EL Sbjct: 847 VLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLEL 906 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R P+L+ ++ +T A + +SKPF+ R+L+ EV L +K Sbjct: 907 IRMIRS-SPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNLQALK 965 >gi|189425304|ref|YP_001952481.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189421563|gb|ACD95961.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 460 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD+ R+ + L KAG+ +S NGA V E L+L D+ +P+ +GIE Sbjct: 8 RILIIDDDEPGRQVMELLLKKAGFAPLSAENGAQGVALVHEGRADLVLVDLFLPDKNGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R ++ P+L+V+ ITG A+ + ++KP + +L Sbjct: 68 ILREIRQVAPELEVVVITGHASAETAVQAMKEGAFDYITKPVNFEEL 114 >gi|167629796|ref|YP_001680295.1| stage 0 sporulation protein f, putative [Heliobacterium modesticaldum Ice1] gi|167592536|gb|ABZ84284.1| stage 0 sporulation protein f, putative [Heliobacterium modesticaldum Ice1] Length = 144 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D +R L L AGY V + NG A K E +L D+ MP +DG Sbjct: 4 GKRILVVDDQAGVRSLLRIILQDAGYHVYTAANGIEAVRKAGECNIPFVLMDVRMPGLDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL--T 119 ++ + + +P +KV+ +T F+ +L + L KPF + L E++R+ T Sbjct: 64 VQAMLQMMKQNPYIKVVLMTAFSDESLIQQALQDGAIGYLIKPFDVYQLREEIDRMWNAT 123 Query: 120 IKN 122 I N Sbjct: 124 IGN 126 >gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ EDD + R L LG GY V S +G + R E L++ D+++P M Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G+E+ R + DP+L ++ ++ A N +++ ++ L KPF L++L+ ++ Sbjct: 61 GLEVVREIRKEDPELPILILS-----AKNQETDKVAGLQLGADDYLGKPFGLKELLARID 115 >gi|189425689|ref|YP_001952866.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189421948|gb|ACD96346.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 467 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 63/116 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+ILL ++++ + R + + L +GY V + + A ++ + L++TDI MP M G+ Sbjct: 5 QRILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMPGMTGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ +R E DL V+ IT +A V ++ + +L+KPF +LV V L Sbjct: 65 EVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNAL 120 >gi|5019771|gb|AAD37857.1|AF133263_2 histidine protein kinase-response regulator hybrid protein CvgSY [Pseudomonas syringae pv. syringae] Length = 671 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 550 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 609 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 610 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 667 >gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1238 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D + PF +L DI MP MDG+ Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 AR E DL ++ +T A S A ++KP L +L +N + KN Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHKN 1233 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK------VMFI 80 +EV + +GA A K+ P LLL D +MPEMDG ++ + + + ++ + Sbjct: 991 FEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSDVVSAIDTMVAEGRLAKRPVIIMM 1050 Query: 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 T +AA L + ++ VL KPF L +E+ Sbjct: 1051 TAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|291569601|dbj|BAI91873.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 379 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L LG Y+V NG A V +P L+L DI MPEMDG ++ Sbjct: 11 ILIVDDTPDNLRVLSATLGDRDYDVQCAINGQLALMAVANQPPDLVLLDIKMPEMDGYQV 70 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 A ++ + D+ V+F++ V + A ++KPF + +++ V LTI+ Sbjct: 71 CEALKSQQKTADIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQLTIR 129 >gi|291448820|ref|ZP_06588210.1| response regulator mprA [Streptomyces roseosporus NRRL 15998] gi|291351767|gb|EFE78671.1| response regulator mprA [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 +IL+AED+ D+R + L GYEV +G +A V EP +L+L D++MP +D Sbjct: 4 TGRILVAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVL-DVMMPALD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + RR ++ V+ +T ++V+ D L KPF L +LV V LL Sbjct: 63 GLAVCRRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALL 120 >gi|220936418|ref|YP_002515317.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Thioalkalivibrio sp. HL-EbGR7] gi|219997728|gb|ACL74330.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Thioalkalivibrio sp. HL-EbGR7] Length = 471 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ + + +DD +R L +AL KAG EV S +A D + ++ ++TDI MP MDG Sbjct: 4 HEHVWVIDDDRSIRWVLERALDKAGIEVTSFETAGAALDALEKDTPDAVVTDIRMPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +EL R P L V+ +T + + + + L KPF + D V V+R Sbjct: 64 LELLDRLHRDHPQLPVIIMTAHSDLESAVSAYQGGAFEYLPKPFDVDDAVALVHR 118 >gi|162149056|ref|YP_001603517.1| two-component sensor histidine kinase/response regulator hybrid protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787633|emb|CAP57229.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Gluconacetobacter diazotrophicus PAl 5] Length = 621 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 8/118 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEMD 60 ++L+ +D+D +R L G++ + G A ++ + L++ D++MP MD Sbjct: 507 RVLVVDDEDAVRAVTAGFLRGMGHQAIEARGGEDALARIAGMAPDVPDLVVMDVMMPRMD 566 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E ARR P +++F+TG+A D+ P +A VL KPF DL V+R + Sbjct: 567 GEEAARRIRAHYPGSRILFLTGYA-----DDTILPDDALVLRKPFTQADLSRHVSRAM 619 >gi|197118536|ref|YP_002138963.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197087896|gb|ACH39167.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 753 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59 N+ IL+ ED+ + L + GY V+S A + LLLTDI+MP M Sbjct: 633 NETILIVEDEPSINALATTMLSELGYRVLSAGTPGEAVKMADGGQMKIDLLLTDIIMPGM 692 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +L+ PD+K +F++G+ A ++ N + + KPF + L +V L Sbjct: 693 NGRDLSELLQRSYPDMKCLFMSGYTADIISERGNIGREVCFVQKPFTTQALAAKVREAL 751 >gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1238 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D + PF +L DI MP MDG+ Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 AR E DL ++ +T A S A ++KP L +L +N + KN Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHKN 1233 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK------VMFI 80 +EV + +GA A K+ P LLL D +MPEMDG ++ + + + ++ + Sbjct: 991 FEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSDVVSAIDTMVAEGRLAKRPVIIMM 1050 Query: 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 T +AA L + ++ VL KPF L +E+ Sbjct: 1051 TAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|111221865|ref|YP_712659.1| putative two-component hybrid sensor and regulator [Frankia alni ACN14a] gi|111149397|emb|CAJ61089.1| putative Two-component hybrid sensor and regulator [Frankia alni ACN14a] Length = 658 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +LL ED + + L + GY+V++ + A E P LLLTD++MP M Sbjct: 536 ETVLLVEDQSAILEVTRRLLTRNGYQVLTAGSAHDAIPIAAEYPGEIHLLLTDVIMPHMQ 595 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G ELA R + P ++V++++G+A L +L KPF Sbjct: 596 GKELADRIRTVRPGIRVLYMSGYAHPVLTTQGKLDPGVILLEKPF 640 >gi|71735973|ref|YP_275436.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556526|gb|AAZ35737.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 697 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 576 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKMLESDMRIDLLVTDVGLPGGMN 635 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 636 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMDAFASRIYEMIER 695 Query: 121 KN 122 K+ Sbjct: 696 KD 697 >gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 238 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 15/127 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAED++ +R F+ + L G+EV+ +NG A ++E LL+ D++MP MDG+ Sbjct: 6 KRILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVMMPRMDGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-------LSKPFHLRDLVNEVN 115 E+ +R + + ++ +T DS K A + L+KPF + +L+ V Sbjct: 66 EVCQRVRQ-SSTVPIIILTAL-------DSERDKVATLDLGADDYLTKPFGVEELLARVR 117 Query: 116 RLLTIKN 122 L N Sbjct: 118 AALRRTN 124 >gi|268316343|ref|YP_003290062.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] gi|262333877|gb|ACY47674.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] Length = 121 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D R+F+ AL G V++ +G A +K+ + P L++TD+ MP+MD Sbjct: 1 MAKTVLVVDDSSTARKFVTFALRAQGLTVLTACDGLEALEKIAQTPVDLVITDLNMPKMD 60 Query: 61 GIELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L +A DP+ + ++ ++ L S L+KPF + L EV++ Sbjct: 61 GIGLV-QALRSDPEYAHIPILVLSSLEDAELVSQSQQLGVQAYLTKPFDAQRLQYEVSKF 119 Query: 118 LT 119 ++ Sbjct: 120 IS 121 >gi|119896738|ref|YP_931951.1| transcriptional regulator [Azoarcus sp. BH72] gi|119669151|emb|CAL93064.1| transcriptional regulatory protein [Azoarcus sp. BH72] Length = 444 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ EDD ++R +AL AG V + + + K+ +++TD+ +P DG+ Sbjct: 6 HVLVIEDDPNVRLGCEQALQLAGIAVDAVGSAEAGLAKLGAGFPGIVVTDMRLPGADGLA 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RRA ELDPDL V+ ITG V L ++ + KPF LV V R L Sbjct: 66 VVRRARELDPDLPVIMITGHGDVTLAVEAMRSGAYDFIQKPFAPDLLVEVVRRAL 120 >gi|86138705|ref|ZP_01057278.1| sensory box histidine kinase/response regulator [Roseobacter sp. MED193] gi|85824765|gb|EAQ44967.1| sensory box histidine kinase/response regulator [Roseobacter sp. MED193] Length = 866 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 10/119 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+D R + L K G++V + GA+A + R++ F L+L DI MPE+DGIE Sbjct: 634 KLLVVEDNDINRELFQQMLQKLGHQVTVASGGAAAIEMCRQQDFDLILMDISMPEVDGIE 693 Query: 64 -LAR-RATELDPDLKVMFITGFAAVALNPDSNA----PKNAKVLSKPFHLRDLVNEVNR 116 + R RA +L + ++ +T A PD +A A++++KP ++L V R Sbjct: 694 AIGRIRAEKLAEAVDIVALTAHTA----PDDHARILKAGFAEIVTKPVSNQELSALVAR 748 >gi|330888950|gb|EGH21611.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 697 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 576 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKMLESDMRIDLLVTDVGLPGGMN 635 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 636 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMDAFASRIYEMIER 695 Query: 121 KN 122 K+ Sbjct: 696 KD 697 >gi|330940801|gb|EGH43783.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 671 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 550 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 609 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 610 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 667 >gi|261252320|ref|ZP_05944893.1| flagellar regulatory protein FleQ [Vibrio orientalis CIP 102891] gi|260935711|gb|EEX91700.1| flagellar regulatory protein FleQ [Vibrio orientalis CIP 102891] Length = 467 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + ++ A K++ ++++D+ M M G Sbjct: 4 QSKVLIVEDDEGLREALVDTLALAGYEWLEADSAEDALVKLKSNNVDIVVSDVQMAGMGG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 64 LALLRNIKQHWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 123 Query: 122 N 122 + Sbjct: 124 S 124 >gi|260662341|ref|ZP_05863236.1| response regulator [Lactobacillus fermentum 28-3-CHN] gi|260553032|gb|EEX25975.1| response regulator [Lactobacillus fermentum 28-3-CHN] Length = 223 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 57/113 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + R L+ A+ GY V NG A D + + +++ DI+MP+++GIE Sbjct: 3 ILLAEDEKQLSRALVTAMQATGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGIEA 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ + V+ +T A + L+KPF L++L+ + L Sbjct: 63 LKQLRQTGNKTYVIMLTAMAEIDDKVTGLEAGADDYLTKPFSLKELLARLRSL 115 >gi|209545197|ref|YP_002277426.1| PAS/PAC sensor hybrid histidine kinase [Gluconacetobacter diazotrophicus PAl 5] gi|209532874|gb|ACI52811.1| PAS/PAC sensor hybrid histidine kinase [Gluconacetobacter diazotrophicus PAl 5] Length = 638 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 8/118 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEMD 60 ++L+ +D+D +R L G++ + G A ++ + L++ D++MP MD Sbjct: 524 RVLVVDDEDAVRAVTAGFLRGMGHQAIEARGGEDALARIAGMAPDVPDLVVMDVMMPRMD 583 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E ARR P +++F+TG+A D+ P +A VL KPF DL V+R + Sbjct: 584 GEEAARRIRAHYPGSRILFLTGYA-----DDTILPDDALVLRKPFTQADLSRHVSRAM 636 >gi|170740074|ref|YP_001768729.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194348|gb|ACA16295.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 927 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D+D +R LG GY V+ +G A VR E F LL+TD +MP + G EL Sbjct: 817 LLVDDEDLVRMSTADMLGDLGYAVIEAASGEEAMRLVRGGERFDLLVTDHLMPGITGTEL 876 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 AR P L V+ ++G+A + L+KPF +L + +L T Sbjct: 877 ARALRHARPGLPVLLVSGYAE-----SDGVAADLPRLTKPFRKNELAARLAQLAT 926 >gi|154496221|ref|ZP_02034917.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC 29799] gi|150274304|gb|EDN01381.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+D MR + K AGYE+ C +G +A ++ RE L++ DI++P +D Sbjct: 1 MAERILIVDDEDKMRSLVAKHARHAGYEIAECADGHAAVERCREGGVDLVILDIMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G E A RA D+ V+ ++ + + + K+ + KPF R+L+ V Sbjct: 61 GYE-ALRAIRTFSDVPVLMLS-----VHGEEQDKVRGFKLGVDDFMVKPFSPRELMYRVA 114 Query: 116 RLL 118 +L Sbjct: 115 AIL 117 >gi|146284495|ref|YP_001174648.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145572700|gb|ABP81806.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 801 Score = 58.5 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 +ILL +DD +R + L G+ V +G A +R+ LLL D MP M+G Sbjct: 681 HRILLVDDDHSVREVTAQMLENLGFAVTEAESGDHALQLLRDGAAVDLLLADFAMPGMNG 740 Query: 62 IELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR P L V+F+TG+A + L D + ++ KPF L N+++ L Sbjct: 741 GELARAVRVRRPQLPVVFVTGYAELCELGLDGYS-----IIQKPFREEQLANKIHLAL 793 >gi|16265273|ref|NP_438065.1| C4-dicarboxylate transport transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|17380399|sp|P13632|DCTD_RHIME RecName: Full=C4-dicarboxylate transport transcriptional regulatory protein dctD gi|152160|gb|AAA26250.1| dctD protein [Sinorhizobium meliloti] gi|15141413|emb|CAC49925.1| C4-dicarboxylate transport transcriptional regulatory protein [Sinorhizobium meliloti 1021] Length = 460 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 57/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+R+ + + L AG+ V S + A + + ++++DI MP MDG+ L Sbjct: 7 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLAL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R+ LDPDL ++ +TG + + + ++KPF LV R Sbjct: 67 FRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARR 118 >gi|15614827|ref|NP_243130.1| two-component response regulator [Bacillus halodurans C-125] gi|10174883|dbj|BAB05983.1| two-component response regulator [Bacillus halodurans C-125] Length = 231 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 51/84 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L+ +D+ M+ + + +AGY V + +G +A D+++ EPF L+L DI++P++D Sbjct: 1 MERRVLVVDDEKKMQVLITVCVSEAGYLVQTAASGLAAMDRLKAEPFDLVLLDIMLPDVD 60 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G L + L D+ ++ +T Sbjct: 61 GFSLIAQLRHLQEDVAIIMLTALG 84 >gi|89092223|ref|ZP_01165177.1| two-component response regulator [Oceanospirillum sp. MED92] gi|89083311|gb|EAR62529.1| two-component response regulator [Oceanospirillum sp. MED92] Length = 119 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD ++ + L G EVV+ ++G +K + E L+ DI+MPEMDG Sbjct: 2 KKILVVEDDPVQQKHICTVLASCGVEVVAASDGKQGLEKAKSENPDLIFMDIIMPEMDGY 61 Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R+ T E + V+ ++ A + + +++KPF DL ++N L Sbjct: 62 SACRQITSNEDTKHIPVVIVSSKNEEADKVWAQLQGASAMVAKPFTEDDLTAQINAL 118 >gi|332828802|gb|EGK01494.1| hypothetical protein HMPREF9455_02327 [Dysgonomonas gadei ATCC BAA-286] Length = 1473 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ EDD D+RRF++ L + Y V+ +G YDK +++DI+MPEMDG Sbjct: 1214 ETILVVEDDSDLRRFIVNIL-EPYYNVLDAADGKEGYDKAVANVPDFIVSDIMMPEMDGT 1272 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + R+T + V+ +T + DS ++KPF ++ L + ++ Sbjct: 1273 ELLQKIRSTTEISHIPVILLTAKTDMESKLDSLDYGADDYITKPFSVKYLRARIENII 1330 >gi|312867067|ref|ZP_07727277.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] gi|311097196|gb|EFQ55430.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] Length = 244 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED++ +R+ L + + + N NG A++K +E+P +LLTDI MP+M+G Sbjct: 4 IMIVEDEELIRQGLTSLVDYEQFGMTVINQAENGREAWEKFKEQPADILLTDINMPQMNG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 ++LA E P ++F+TG+ Sbjct: 64 LDLAHLVKEQSPSCHIIFLTGY 85 >gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] Length = 1382 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L AG+EV + +G +A D R L+++D++MP +DG++ Sbjct: 632 RVLVADDNADMREYLTRLLRSAGHEVRAVADGRAALDAARAHTPDLVVSDVMMPRLDGLQ 691 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + V+ ++ A + + L KPF +L+ V Sbjct: 692 LVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARV 744 >gi|302037597|ref|YP_003797919.1| sigma-54 dependent response regulator FleQ [Candidatus Nitrospira defluvii] gi|300605661|emb|CBK41994.1| Sigma-54 dependent response regulator FleQ [Candidatus Nitrospira defluvii] Length = 471 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 1/106 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q IL+ +DD +R+ L + L G++V ++G + V+++P ++LTD+ MP + Sbjct: 1 MSQSHILVIDDDPAVRQILAETLTGEGHQVTVMSSGLEGVEAVKDQPVHVVLTDLQMPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 DG+E R +++D + + +TG+ V + ++KPF Sbjct: 61 DGLETIDRISKIDSKIIAIVMTGYGTVDYAVRAMKAGAFDFITKPF 106 >gi|322419693|ref|YP_004198916.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320126080|gb|ADW13640.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 453 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D +FL L + GY V NG+ A D++ + L+++DI+MPEMDG Sbjct: 13 HRILIVDDSPTQAKFLELMLVEQGYRVQVARNGSDALDRILSQAPDLVISDILMPEMDGF 72 Query: 63 ELARRATELDP--DLKVMFIT 81 EL RR LD DL ++ +T Sbjct: 73 ELCRRVRALDQAGDLPIILLT 93 >gi|238925636|ref|YP_002939153.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656] gi|238877312|gb|ACR77019.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656] Length = 223 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ K L K+GY+V S ++GA A + + E L+++DI+MP MDG E Sbjct: 3 KILIVEDDKELSLLFQKVLEKSGYQVKSASDGAQALEVLDREYIDLIISDIMMPVMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT ++ + + KP ++ ++V V LL Sbjct: 63 LVSELRSAGYQIPVLMITAKSSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 117 >gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] Length = 1400 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L AG+ V + +G +A D+ R E L+++D++MP +DG+ Sbjct: 648 RVLIADDNADMREYLARLLRGAGHRVSAVTDGYAALDRARAETPDLIISDVMMPGLDGLR 707 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN---RLL 118 L RA + V+ ++ A + + L KPF +L+ V +L+ Sbjct: 708 LVADLRADGRTAGIPVLLLSARAGQEASIEGLEAGADDYLVKPFSAAELLARVQTNVKLV 767 Query: 119 TIKN 122 ++N Sbjct: 768 RLRN 771 >gi|197122714|ref|YP_002134665.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] gi|196172563|gb|ACG73536.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] Length = 434 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ D R L + L YEV S ++G A D R E L+L DI MP +DG E+ Sbjct: 132 LLVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEHPDLVLLDIGMPRLDGFEV 190 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R + DP D+ V+F++G A+ S L KPF R+L V R L + Sbjct: 191 LQRLRQ-DPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 248 >gi|188586033|ref|YP_001917578.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350720|gb|ACB84990.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 120 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+QK+L+ +D MR + L K G+EVV NG A DK +E L+ DI MPE Sbjct: 1 MSQKVLIVDDAAFMRMMIKDILTKNGFEVVGEAVNGQEAVDKYQELSPDLITMDITMPEK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ + E D + KV+ + ++ ++ + KPF ++ +N+ L Sbjct: 61 DGIQALKEIKEQDSNAKVIMCSAMGQQSMVIEAIQAGAKDFIVKPFQPDRVMEAINKAL 119 >gi|86156999|ref|YP_463784.1| putative GAF sensor protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773510|gb|ABC80347.1| putative GAF sensor protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 622 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 59/111 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL+ +D+ + L AG+ V + ++ A + + E LLLTD+VMP +DG Sbjct: 3 NGRILVVDDERFFQELFRDVLAGAGHAVRTSSSAEEALEVLAAERVDLLLTDMVMPGLDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 + L R A DP+L+V+ +TG V L +S + L+KP +L+ Sbjct: 63 LGLIREARRRDPELEVVAVTGREDVKLAVESMKAGCSDFLTKPLEPGELLR 113 >gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 231 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ EDDD +R L L K GYEVV +G A + +E L+L D+ MP MDG+E+ Sbjct: 6 IMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGMDGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR L L ++F++ + ++KPF +L + +L Sbjct: 66 CRR-IRLKTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAIL 118 >gi|330972109|gb|EGH72175.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 241 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 120 HTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 179 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 180 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 237 >gi|329956909|ref|ZP_08297477.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328523666|gb|EGF50758.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 1352 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ ED+D++R +L + L + Y V C+NG SA V+E L+++DI+MPEM G Sbjct: 1091 QKILVVEDNDELREYLRRTLAE-NYHVQVCSNGKSALYIVKEYFPDLIISDIMMPEMRGD 1149 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D+ I ALN D N + + KPF++ L + L Sbjct: 1150 ELCQIVKN---DIDTSHIPIILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANL 1206 Query: 118 L 118 L Sbjct: 1207 L 1207 >gi|222085891|ref|YP_002544422.1| nitrogen regulation protein [Agrobacterium radiobacter K84] gi|221723339|gb|ACM26495.1| nitrogen regulation protein [Agrobacterium radiobacter K84] Length = 483 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L +AL +AGY+V +N A+ + V L++TD+VMP+ + Sbjct: 1 MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWVSAGEGDLVVTDVVMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + P+L V+ ++ ++ L KPF L +L+ + R L+ Sbjct: 61 AFDLLPRIKKARPELPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIAIIGRALS 119 >gi|218133677|ref|ZP_03462481.1| hypothetical protein BACPEC_01546 [Bacteroides pectinophilus ATCC 43243] gi|217991052|gb|EEC57058.1| hypothetical protein BACPEC_01546 [Bacteroides pectinophilus ATCC 43243] Length = 120 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D MR + L K GY + NGA A +K E L+L DI MPEM Sbjct: 1 MAKNILICDDAAFMRMMIKDILTKNGYNIAGEAENGAKAVEKYNELKPDLVLMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGIE ++ DP+ V+ + A+ +S + KPF ++ V +++ Sbjct: 61 DGIEALKKIKAGDPNAMVIMCSAMGQQAMVIESIQSGAKDFIVKPFQADRVIEAVKKVI 119 >gi|298492081|ref|YP_003722258.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298233999|gb|ADI65135.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 690 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 11/124 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 KILLAED+ ++ ++ L K GY NNG +K+ + + ++L D+ MPEMDGI Sbjct: 568 KILLAEDNKINQKVVLLTLKKLGYSADIANNGLEVLEKIETQVYDVILMDMQMPEMDGIA 627 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 ++ R++ ++ P +I A AL+ D N + +SKP + D + Sbjct: 628 ATQIIRQSAKVQP-----YIIALTANALDADRQICLNVGMNDYISKPIVIADFQEALKNA 682 Query: 118 LTIK 121 TIK Sbjct: 683 ATIK 686 >gi|218781499|ref|YP_002432817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762883|gb|ACL05349.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1372 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N++IL+ +D+ + + L + GY+ + NG A + + P F L+++D+ MP+M Sbjct: 1248 NERILIVDDEPSIANLAERILERLGYQTILKLNGIEAIEAFKSNPDSFDLVISDVAMPKM 1307 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 G ELAR + PD+ ++ TGF+ ++ D A K +L KP ++ V +L Sbjct: 1308 TGDELARELISIRPDIPIILCTGFSE-RIDADKAAALGVKGLLMKPIISLEMAEMVRNVL 1366 >gi|66046688|ref|YP_236529.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae B728a] gi|63257395|gb|AAY38491.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae B728a] Length = 471 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R L + L AGY+ + + A PFSL+++D+ MP MDG +L Sbjct: 5 VLLVEDDRSLREALGETLELAGYDYKAVGSAEEALVAAEATPFSLVISDVNMPGMDGHQL 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 65 LSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|225175866|ref|ZP_03729859.1| response regulator receiver protein [Dethiobacter alkaliphilus AHT 1] gi|225168790|gb|EEG77591.1| response regulator receiver protein [Dethiobacter alkaliphilus AHT 1] Length = 123 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 62/114 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I++ +D +RR L + L AGY+V++ + G A + V+E P L+L D+ M MD Sbjct: 1 MSATIMVVDDRTGIRRLLQEVLQGAGYQVLTASGGNDALELVKENPVDLVLLDMKMAGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E +L + ++ +T + + + ++ A +SKPF + +L EV Sbjct: 61 GLETLTLLKKLCSQVIILIMTAYEELEVLKEAKRRGAAGYISKPFDIEELKEEV 114 >gi|220917497|ref|YP_002492801.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955351|gb|ACL65735.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] Length = 434 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ D R L + L YEV S ++G A D R E L+L DI MP +DG E+ Sbjct: 132 LLVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEHPDLVLLDIGMPRLDGFEV 190 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R + DP D+ V+F++G A+ S L KPF R+L V R L + Sbjct: 191 LQRLRQ-DPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 248 >gi|317475919|ref|ZP_07935174.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316907851|gb|EFV29550.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1365 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 46/67 (68%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDD++RR++ + LG + + + C NG A+ ++ ++ L+++DI+MPEMDG+ Sbjct: 1107 RVLIVEDDDEIRRYICRELG-SDFHMQECCNGKEAFTQILKKAPDLIISDIMMPEMDGMT 1165 Query: 64 LARRATE 70 L + + Sbjct: 1166 LCSKVKQ 1172 >gi|307316771|ref|ZP_07596213.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium meliloti AK83] gi|306897393|gb|EFN28137.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium meliloti AK83] Length = 460 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 57/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+R+ + + L AG+ V S + A + + ++++DI MP MDG+ L Sbjct: 7 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLAL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R+ LDPDL ++ +TG + + + ++KPF LV R Sbjct: 67 FRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARR 118 >gi|326790016|ref|YP_004307837.1| response regulator receiver protein [Clostridium lentocellum DSM 5427] gi|326540780|gb|ADZ82639.1| response regulator receiver protein [Clostridium lentocellum DSM 5427] Length = 120 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR L L K G+EV NG A ++ +E L+L DI MPE+ Sbjct: 1 MAGRILVVDDAAFMRMMLKDILTKNGFEVAGEAENGLRAIERYKEVSPDLVLMDITMPEL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI ++ DP+ K++ + A+ +S + KPF +V +N+ L Sbjct: 61 DGIGAVKQIKAEDPNAKIIMCSAMGQQAMVLESIQAGARDFIVKPFQADRIVEAINKCL 119 >gi|307726114|ref|YP_003909327.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586639|gb|ADN60036.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 885 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD D+R ++ L + GY+V++ ++G +A + + + P LL TD+VMP ++ Sbjct: 585 ETVLVVEDDADVRLTAVEMLVQLGYKVLTASSGDAALEFIHSDVPIDLLFTDVVMPGKIK 644 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ELARRA P + +F +G+ + +LSKP+ DL +V +L Sbjct: 645 SVELARRAAARSPAVPTLFTSGYTRDEIVHHGKLDAGITLLSKPYRRDDLARKVRGVL 702 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD D R L LG G + S + A V + + +L TDI +P M G L Sbjct: 767 VLLVEDDADSREALSLLLGTLGLDCTSVGSAEEALPLVPAQRYDILCTDITLPGMSGDNL 826 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 AR PD+ V+ ++G+ A A +S A++L KPF L L +E+ R Sbjct: 827 ARAVLHAQPDVHVLLVSGYGAHASIGES--IPGARILGKPFDLAQLRHELAR 876 >gi|257484923|ref|ZP_05638964.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 256 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 56/116 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD Sbjct: 1 MSINVLLVEDDRSLREALGETLELAGYGYQAVCSAEEALVAAEAQPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|169826565|ref|YP_001696723.1| sporulation initiation phosphotransferase F [Lysinibacillus sphaericus C3-41] gi|168991053|gb|ACA38593.1| Sporulation initiation phosphotransferase F [Lysinibacillus sphaericus C3-41] Length = 119 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R L + L K GY NG A E+ +L D+ +P MDGI Sbjct: 2 KRLLIVDDQQGIRLLLNEVLKKEGYVTYLAANGLEALKYADEQDMDCVLLDMKIPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR E P L V +T + + + ++ + +KPF + ++ +EVN+ L Sbjct: 62 EILRRLKEKFPKLPVFMMTAYGELDVVQEALNLGAIRYFTKPFDIFEVRDEVNKAL 117 >gi|254974133|ref|ZP_05270605.1| chemotaxis protein [Clostridium difficile QCD-66c26] gi|255091534|ref|ZP_05321012.1| chemotaxis protein [Clostridium difficile CIP 107932] gi|255099639|ref|ZP_05328616.1| chemotaxis protein [Clostridium difficile QCD-63q42] gi|255305523|ref|ZP_05349695.1| chemotaxis protein [Clostridium difficile ATCC 43255] gi|255313261|ref|ZP_05354844.1| chemotaxis protein [Clostridium difficile QCD-76w55] gi|255515951|ref|ZP_05383627.1| chemotaxis protein [Clostridium difficile QCD-97b34] gi|255649042|ref|ZP_05395944.1| chemotaxis protein [Clostridium difficile QCD-37x79] gi|260682233|ref|YP_003213518.1| chemotaxis protein [Clostridium difficile CD196] gi|260685832|ref|YP_003216965.1| chemotaxis protein [Clostridium difficile R20291] gi|306519155|ref|ZP_07405502.1| chemotaxis protein [Clostridium difficile QCD-32g58] gi|260208396|emb|CBA60921.1| chemotaxis protein [Clostridium difficile CD196] gi|260211848|emb|CBE02262.1| chemotaxis protein [Clostridium difficile R20291] Length = 120 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M KIL+ +D MR + +AL K+GY ++ N+G A + + E L+L DI MP+ Sbjct: 1 MENKILIVDDAIFMRMIIKEALSKSGYNNLIEANDGEEACNIFKYEKPDLMLLDITMPKK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E+ R +LD KV+ + + ++ + KPF LV VN +L Sbjct: 61 DGLEVLREIKKLDSSAKVVMCSAIGQENMIVEAIKLGALDFIVKPFKTETLVKVVNNVL 119 >gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 234 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ + GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTREGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|329849681|ref|ZP_08264527.1| cell cycle histidine kinase CckA [Asticcacaulis biprosthecum C19] gi|328841592|gb|EGF91162.1| cell cycle histidine kinase CckA [Asticcacaulis biprosthecum C19] Length = 745 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +IL ED+ +R L + GYEV+ +G A + + E F LL++D++MP +DG Sbjct: 627 RILFVEDEQIVRGIAAHLLRQRGYEVIEACDGEEALEIIEAENGKFDLLISDVIMPGLDG 686 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +RA + ++ VMFI+G+A + KN L KP ++ L +V L Sbjct: 687 PSMLKRARPMIGNVPVMFISGYAESEFSDLLEEEKNVSFLPKPLDIKTLAEKVKEQLA 744 >gi|323491444|ref|ZP_08096628.1| FlaM [Vibrio brasiliensis LMG 20546] gi|323314313|gb|EGA67393.1| FlaM [Vibrio brasiliensis LMG 20546] Length = 466 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + ++ A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADSAEDALVKLKSNNVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRNIKQHWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|163847873|ref|YP_001635917.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525748|ref|YP_002570219.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] gi|163669162|gb|ABY35528.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449627|gb|ACM53893.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] Length = 307 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 7/97 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +DD ++RR + AL + YEV ++ +A + +P LL TD+ MP M Sbjct: 1 MPKRILVVDDDPNIRRLVSLALTEDTPYEVSDVSSAEAALLHISRQPVDLLFTDVRMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 GIEL +R +LDP V+ T ++P+ +P+ Sbjct: 61 SGIELIQRVRQLDPGTAVVVFT------ISPEDLSPQ 91 >gi|116751158|ref|YP_847845.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] gi|116700222|gb|ABK19410.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 1109 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N++ILL +D++ + + L K L + GY+V + A + +P F L++TD MP+M Sbjct: 981 NERILLVDDEEALAKALKKRLERLGYQVTAVTGSPEALEIFGGQPEAFDLIITDYTMPKM 1040 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G ELAR ++ + ++ TGF+ ++ A + ++ KP L+ + Sbjct: 1041 TGTELAREILKIRSSIPIILSTGFSERLDEEETAAAGISALIMKPVSLKGI 1091 >gi|329957721|ref|ZP_08298196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522598|gb|EGF49707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1348 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ D+RR+L LGK+ Y + NG A ++E+ L+LTD++MP MDG+ Sbjct: 1101 EKILIVEDNFDIRRYLSDELGKS-YHISEAGNGEEALALMKEQEADLILTDVMMPVMDGL 1159 Query: 63 ELARR 67 +L ++ Sbjct: 1160 QLCKQ 1164 >gi|328955049|ref|YP_004372382.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455373|gb|AEB06567.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 234 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 7/108 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+AEDD D+ L LG +GYEV + NGA A + +R E ++ L DI+MP+M+ Sbjct: 1 MADTVLIAEDDGDIIEILSLYLGGSGYEVRAARNGADALEILRREQVAVALVDIMMPKMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPF 105 G +L +A + + ++ I+ A A + D+ A ++KPF Sbjct: 61 GYDLI-KAARAESQVPIIIISARAEAADKIIGLDAGAD---GYITKPF 104 >gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] Length = 230 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L ++L GY V +GA A +K+ ++ L + D++MP++DG++ Sbjct: 2 KILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKLDGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR DL VM +T +V+ L KPF L +L+ V LL Sbjct: 62 VCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLL 116 >gi|213967563|ref|ZP_03395711.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. tomato T1] gi|301385732|ref|ZP_07234150.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. tomato Max13] gi|302059421|ref|ZP_07250962.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. tomato K40] gi|302134814|ref|ZP_07260804.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927864|gb|EEB61411.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. tomato T1] Length = 471 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MDG +L Sbjct: 5 VLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMDGHQL 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 65 LSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|253699979|ref|YP_003021168.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774829|gb|ACT17410.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 859 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGI 62 +LL EDD +RR + L + GY V+ A A+ + ++ ++LTD+VMP M+G Sbjct: 736 VLLVEDDPLVRRTTLNTLKEIGYHVIEAAGADEAIAFCRKKDTDLDVILTDVVMPGMNGK 795 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ P LKV+F++G+ + A + KPF + L ++ + K Sbjct: 796 EMVDAIESFRPGLKVLFMSGYTKDLVAQRGVADGGRHFIQKPFDIHSLAAKLREAMRQK 854 >gi|294852455|ref|ZP_06793128.1| nitrogen regulation protein NR(I) [Brucella sp. NVSL 07-0026] gi|294821044|gb|EFG38043.1| nitrogen regulation protein NR(I) [Brucella sp. NVSL 07-0026] Length = 480 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 62/113 (54%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66 +A+DD +R L +AL +AGY+V +N AS + V L+++D++MP+ + +L Sbjct: 1 MADDDAAIRTVLNQALSRAGYDVRVTSNAASLWRWVAAGDGDLVISDVMMPDENAFDLLP 60 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++ PDL V+ ++ ++ + L KPF L +L+N V R L+ Sbjct: 61 RIKKIRPDLPVVVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELINIVGRALS 113 >gi|148378896|ref|YP_001253437.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931468|ref|YP_001383278.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936439|ref|YP_001386827.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288380|emb|CAL82457.1| two component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927512|gb|ABS33012.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932353|gb|ABS37852.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 223 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDVLYKEYIDLIISDIMMPNMDGYT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + ++ ++ IT + + + KP + +++ V LL Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALL 117 >gi|330967109|gb|EGH67369.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. actinidiae str. M302091] Length = 471 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MDG +L Sbjct: 5 VLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMDGHQL 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 65 LSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 226 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GYE+V NNG + + + L+L DI++PE++G+E Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR D+ ++ +T AV ++KPF + +L+ + R++ Sbjct: 63 VLRRLRR-TSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKKRIV 121 Query: 119 TIKN 122 T++ Sbjct: 122 TVRK 125 >gi|114777249|ref|ZP_01452260.1| Signal transduction histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114552394|gb|EAU54877.1| Signal transduction histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 989 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMP 57 + Q +LL +D ++ K L Y V++ ++G A Y R E L++ D+VMP Sbjct: 869 LGQTVLLVDDHQELLDTNRKLLESLNYLVLTASDGEEAVGIYSARRNE-IELVILDVVMP 927 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +M G E + E++P +V+F TG+ + D + V++KPF L ++RL Sbjct: 928 KMGGTEACKAIREINPQARVLFATGYDNAGMQQDETV-ADIPVINKPFSAAKLSTIIHRL 986 Query: 118 LT 119 L+ Sbjct: 987 LS 988 >gi|167647260|ref|YP_001684923.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167349690|gb|ABZ72425.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 922 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + +L+ EDD +R +++ L + GY + +G A + LL++D+ +P ++G Sbjct: 801 ETVLVIEDDPGVRLLVMQVLEELGYRGIETADGRQAVPILESSRHIDLLISDVGLPGLNG 860 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A E P+L ++F+TG+A A + + +++SKPF + L + +L Sbjct: 861 RQLAEIARERRPNLPILFMTGYAKQAADQAAFLEGGMEIISKPFAIEQLGRRIGEIL 917 >gi|324009494|gb|EGB78713.1| response regulator receiver domain protein [Escherichia coli MS 57-2] Length = 425 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 48/85 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I ++ L+P + V+ +T +++V Sbjct: 65 IATLKKIKTLNPAIPVLIMTAYSSV 89 >gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1033 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ R + + L K G+ V +G A + +RE F L LTDI MP +DG+ Sbjct: 914 ILVAEDERVNRVVVQRILEKLGHRTVCVGSGEEALNILRERSFDLFLTDIQMPGLDGVAT 973 Query: 65 ARRA-TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R EL D+ V+ +T A A +SKPF + L E+ R+L Sbjct: 974 TRVIRNELKLDIPVIALTAHAMQGDRDRFIAAGMNGYVSKPFEIDSLQREIERVL 1028 >gi|224368297|ref|YP_002602460.1| sigma-54 dependent DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] gi|223691013|gb|ACN14296.1| sigma-54 dependent DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] Length = 128 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+D + + L + + C +G ++V + +LL D+ + +MDG Sbjct: 3 QRKILIIDDEDVICKACKMVLNEQEFSCDHCLSGVEGLERVMNGSYDMLLLDMKLKDMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ R + PDL V+ ITG++ +A + LSKPF +L+ V LL Sbjct: 63 MEILERVKKEKPDLYVIVITGYSTLANTVKAMKLGANDYLSKPFADHELIKAVKDLL 119 >gi|160932717|ref|ZP_02080106.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753] gi|156867791|gb|EDO61163.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753] Length = 219 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + + +L +GYE V C +G A VR E F L+L DI++P +DG + Sbjct: 3 KILIVEDDQTISKLIAASLSISGYESVPCFDGNEAVHMVRNEEFDLILLDIMLPGLDGFQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + E V+F+T V+ + KPF +L+ + +L Sbjct: 63 VMEKIRE--TGTPVIFLTAMGDVSDRVKGLKSGAEDYIVKPFEPLELLARIEIVL 115 >gi|254286632|ref|ZP_04961587.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae AM-19226] gi|150423216|gb|EDN15162.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae AM-19226] Length = 450 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +GASA + + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALEAIEQQNFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 1066 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ D+RR++ L AG+ V NGA ++K + +++TD++MP++ G+EL Sbjct: 847 VLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLEL 906 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R P+L+ ++ +T A + +SKPF+ R+L+ EV L +K Sbjct: 907 IRMIRS-SPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNLQALK 965 >gi|322417554|ref|YP_004196777.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320123941|gb|ADW11501.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 510 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D+ L L AG+E +G A + V E F+L++ DI MP MDG+E Sbjct: 5 KILIVDDEADIALILKLQLEDAGFETERARDGVEALEAVEREQFTLIMLDIKMPRMDGLE 64 Query: 64 -LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L+R ++ P V+ +T + + D+ +SKPF D++ +V R + I Sbjct: 65 VLSRIRSDETP---VVMMTAHGSEDIAVDAMKKGALDYISKPFSSDDMLQKVERAIKI 119 >gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1078 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ + + L KAG+ V NG D +REE F +L D+ MP M GIE Sbjct: 954 RLLLAEDEAINQLAMRTLLEKAGHRVSIAQNGQEVLDLLREEDFDCVLMDVQMPVMSGIE 1013 Query: 64 LARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 RR P+L K + I A A++ D + A + LSKP L DLV + +L Sbjct: 1014 ATRR-IRTSPELAARKDVPIIALTAHAMSGDRESFLQAGMDDYLSKPVGLDDLVKAIAKL 1072 >gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 248 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 63/115 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EVV+ +G A V +E L++ D+++P+MDG Sbjct: 15 RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGFT 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR E D ++F+T ++ ++KPF L ++V + +L Sbjct: 75 VARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAIL 129 >gi|332827844|gb|EGK00579.1| hypothetical protein HMPREF9455_03222 [Dysgonomonas gadei ATCC BAA-286] Length = 514 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 6/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL A+D+ D+ R I L + GYEV N+G A D V+ E F ++ D MP + G+ Sbjct: 4 KRILWADDEIDVLRAHILFLEEKGYEVTPVNSGQDALDSVKSESFDIIFLDENMPGLAGM 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E E+DP++ V+ IT + + K A L KP VN LL++K Sbjct: 64 ETLSLIKEIDPNIPVIMITKSEDEGIMTHAIGKKIADYLIKP------VNPNQILLSLK 116 >gi|170077968|ref|YP_001734606.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885637|gb|ACA99350.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 372 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 9/124 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D D + L ++V+ NNG A + V ++PF L+L D++MP MDG E Sbjct: 9 RVLVVDDSPDNLLLIQSILEDEDLDLVTVNNGQKALELVAQQPFHLILLDVMMPHMDGFE 68 Query: 64 LARRATELDPD---LKVMFITGFA--AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R DPD + ++ IT A +VAL D A + KP + +L+ V LL Sbjct: 69 ITRHIRN-DPDIPYIPILLITAHAQPSVALGLDIGAD---DFIRKPVEIDELIARVRSLL 124 Query: 119 TIKN 122 K+ Sbjct: 125 RFKH 128 >gi|156740891|ref|YP_001431020.1| GAF sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232219|gb|ABU57002.1| GAF sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 842 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + + + L + GY V C +GA+A D++ + LL+ D+ MP M G EL Sbjct: 723 VLVVDDEAAIAELIARLLRERGYTVDICRDGATALDRINRTAYDLLICDVRMPGMSGDEL 782 Query: 65 ARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ P L +V+F++G A + + + KPF + VN V ++L Sbjct: 783 FANLSQRAPHLTRRVLFVSGDTASYSTREFLERSGVRYVEKPFDAAEFVNIVRQVL 838 >gi|118581482|ref|YP_902732.1| two component sigma54 specific Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504192|gb|ABL00675.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 480 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 58/104 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D++ MR L KAL + G+ V ++G A ++E + L + DI MP M G++ Sbjct: 5 RILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 L R E+ DL V+ +T A++ ++ ++KPF L Sbjct: 65 LLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDL 108 >gi|312863278|ref|ZP_07723516.1| response regulator SaeR [Streptococcus vestibularis F0396] gi|322516455|ref|ZP_08069377.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|311100814|gb|EFQ59019.1| response regulator SaeR [Streptococcus vestibularis F0396] gi|322125048|gb|EFX96454.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 232 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|52695964|pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response Regulator Chey From The Thermophile Thermotoga Maritima Length = 118 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++L+ +D MR L + KAGYEV NG A +K +E ++ DI MPEM+ Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI+ + ++DP+ K++ + A+ ++ + KPF +V +N++ Sbjct: 61 GIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 117 >gi|326201109|ref|ZP_08190981.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988677|gb|EGD49501.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 KIL+A+D++ MRR + L K GY V+ +NG A + E E SL++ D++MP MDG Sbjct: 5 KILIADDEERMRRLVADFLKKQGYAVIEADNGMKALQIIIEQKETISLVILDVMMPIMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E A R+ + V+ +T A S + ++KPF L L+ V LL Sbjct: 65 WE-ALRSIRQYSKVPVIMLTAKCTEADELLSFGIGADEYITKPFSLMILLARVQALL 120 >gi|157164687|ref|YP_001466781.1| extracellular solute-binding protein [Campylobacter concisus 13826] gi|112800153|gb|EAT97497.1| DNA-binding response regulator [Campylobacter concisus 13826] Length = 220 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 10/113 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + + + LG+ GY+V + NN A D E F LL+ D+ +P+ DG Sbjct: 3 RILLVEDDETLLDLISEYLGENGYDVTTTNNAKDALDLAYERNFDLLILDVKLPQGDGFS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLV 111 L EL +F T +LN + K K L KPF L++L+ Sbjct: 63 LLSSLRELGVTTPSIFTT-----SLNTIDDLEKGYKSGCDDYLKKPFELKELL 110 >gi|28869160|ref|NP_791779.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. tomato str. DC3000] gi|28852400|gb|AAO55474.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. tomato str. DC3000] Length = 471 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MDG +L Sbjct: 5 VLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMDGHQL 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 65 LSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|329848262|ref|ZP_08263290.1| response regulator [Asticcacaulis biprosthecum C19] gi|328843325|gb|EGF92894.1| response regulator [Asticcacaulis biprosthecum C19] Length = 329 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +L+A+DDD +R L+ AG +V S +GA A++ ++ +S+ L D +MP D Sbjct: 204 LGSHVLIADDDDTVREMLVHKFQSAGCKVTSVESGADAWEALQHGDYSVALLDRMMPGYD 263 Query: 61 GIELAR--RATELDPDLKVMFITG--FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ L R +A + V+F+T + A L + + ++KPFH +++ V R Sbjct: 264 GVTLLRMMKADPRTARVPVVFLTARHYGADVLEGLNTGAVD--YITKPFHADEVLARVLR 321 Query: 117 LL 118 LL Sbjct: 322 LL 323 >gi|42519461|ref|NP_965391.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|41583749|gb|AAS09357.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|329667017|gb|AEB92965.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 221 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ + R L+ A+ YEV NG A + R+ + +++ DI+MP MDGI Sbjct: 2 KILLAEDEEQLSRVLVAAMQSVNYEVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T A V DS A L+KPF L++L+ Sbjct: 62 ALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|330953860|gb|EGH54120.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae Cit 7] Length = 685 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 564 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 624 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 681 >gi|325299898|ref|YP_004259815.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319451|gb|ADY37342.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1366 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD+++R ++ + L A Y V +C+NG A + + ++ +L+++D++MPEMDG+ L Sbjct: 1100 ILVVEDDEEIRNYISRELA-ADYHVGTCSNGKEALEVIFKQEPALIISDVMMPEMDGLTL 1158 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + + ++ +T N + L+KPF+++ L + V L+ Sbjct: 1159 CRMVKQNLHKRHIPIILLTAKTRDEDNIEGLETGADAYLTKPFNMKILRHTVENLI 1214 >gi|293365787|ref|ZP_06612493.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703345|ref|ZP_07640289.1| response regulator [Streptococcus oralis ATCC 35037] gi|291315720|gb|EFE56167.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623121|gb|EFO02114.1| response regulator [Streptococcus oralis ATCC 35037] Length = 245 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A+D ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWDLIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGIQLASLVRETYPQVHLVFLTGYDYFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|225869229|ref|YP_002745177.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702505|emb|CAX00433.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ ++ + L +AGY V + ++G+ A + ++ + L++TD++MP MD Sbjct: 1 MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIITDVMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRL 117 G + PD +FIT A PD S + +SKPF R+LV V + Sbjct: 61 GYDFIGEVLLEKPDQPFLFIT---AKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNI 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|223985682|ref|ZP_03635730.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM 12042] gi|223962373|gb|EEF66837.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM 12042] Length = 223 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+D +R + L AG++V C +GASA +K E F +++ D ++PE+ GIE Sbjct: 3 RILLIEDEDSIRHLISYDLKNAGFDVTGCPDGASAREKGLNESFDIMIIDWMLPEISGIE 62 Query: 64 LAR 66 L R Sbjct: 63 LVR 65 >gi|83717918|ref|YP_438357.1| chemotaxis response regulator [Burkholderia thailandensis E264] gi|167576628|ref|ZP_02369502.1| chemotaxis response regulator [Burkholderia thailandensis TXDOH] gi|167614803|ref|ZP_02383438.1| chemotaxis response regulator [Burkholderia thailandensis Bt4] gi|257141388|ref|ZP_05589650.1| chemotaxis response regulator [Burkholderia thailandensis E264] gi|83651743|gb|ABC35807.1| chemotaxis response regulator [Burkholderia thailandensis E264] Length = 120 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL +D +RR + L +GYEV +G + +K E + L+LTD MP MDGI Sbjct: 2 KKILSVDDTVTIRRLIAHVLTSSGYEVDEAQDGCAGLEKAAENDYDLILTDYNMPHMDGI 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R RA ++ +T L + KP H LV V RL+ Sbjct: 62 SMLRAIRALPAHGATPIVVVTTEFGADLKQQGRDAGATGWMVKPIHPGKLVEMVRRLI 119 >gi|315607267|ref|ZP_07882267.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250970|gb|EFU30959.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1302 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD DM FL + GY VV+ NGA ++++E SL+++D +MP MDG E Sbjct: 1059 VLIVEDDADMSGFLAANF-RPGYRVVTAENGAEGLERLKEHTVSLIVSDWMMPVMDGAEF 1117 Query: 65 ARR 67 RR Sbjct: 1118 CRR 1120 >gi|288925297|ref|ZP_06419232.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] gi|288338062|gb|EFC76413.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] Length = 1340 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD DM FL + GY VV+ NGA ++++E SL+++D +MP MDG E Sbjct: 1097 VLIVEDDADMSGFLAANF-RPGYRVVTAENGAEGLERLKEHTVSLIVSDWMMPVMDGAEF 1155 Query: 65 ARR 67 RR Sbjct: 1156 CRR 1158 >gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 235 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL +D++ + R L LGK G+ +G A EPF +L DI++P++D Sbjct: 1 MTKQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ + A+ L D L+KPF R+L+ Sbjct: 61 GIEVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|227890323|ref|ZP_04008128.1| two component response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849137|gb|EEJ59223.1| two component response regulator [Lactobacillus johnsonii ATCC 33200] Length = 221 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ + R L+ A+ YEV NG A + R+ + +++ DI+MP MDGI Sbjct: 2 KILLAEDEEQLSRVLVAAMQSVNYEVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T A V DS A L+KPF L++L+ Sbjct: 62 ALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|226305622|ref|YP_002765582.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|229489559|ref|ZP_04383422.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184739|dbj|BAH32843.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|229323656|gb|EEN89414.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 226 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD+ + L +ALG+ GY V G +A + E F LL+ D+ +P MDG+E+ Sbjct: 4 VLLAEDDEAIAAPLSRALGREGYSVTVEPTGPAALQQALEGDFDLLILDLGLPGMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ L V+ +T V L+ ++ +SKPF L +L+ V LL Sbjct: 64 CRQIRAHRTSLAVLMLTARTDEVDFVVGLDAGAD-----DYVSKPFRLAELMARVRALL 117 >gi|281420807|ref|ZP_06251806.1| DNA-binding response regulator RprY [Prevotella copri DSM 18205] gi|281405099|gb|EFB35779.1| DNA-binding response regulator RprY [Prevotella copri DSM 18205] Length = 232 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L G+ V C +G Y + + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGFTTVLCPDGEVGYKEFNKNKFDIAVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + DL ++F+T A L D + K+ ++KPF + +LV V +L Sbjct: 66 LAQEIRQTNADLPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVFRVEAIL 120 >gi|167033509|ref|YP_001668740.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859997|gb|ABY98404.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 707 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 +++LL +D+ ++R + + L + G+ V + +A D+ R PF L++TDI +P Sbjct: 588 ERLLLVDDELNLRAVMREYLTERGFNVTDVGDANTALDRFRHGGPFDLVITDIGLPGGFS 647 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A+ K++FITG+A + +++KPF L DL +E R+L Sbjct: 648 GRQVAKAMRMQLEQQKILFITGYADQPIEAQLLGQPGTALMNKPFSLADLADEAIRVL 705 >gi|186474188|ref|YP_001861530.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196520|gb|ACC74484.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 815 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 ++ +L+ EDD ++ ++ L + GY V++ N+ A A +R LL +D+VMP + Sbjct: 561 DETVLVVEDDRRVQLTVVDMLTQLGYSVLTANDAAEALTVLRSGAKVDLLFSDVVMPGSL 620 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-------HLRDLVN 112 E+AR+A + P LKV+F +G + D A +L KP+ LRD+ + Sbjct: 621 LSPEMARQALLMRPSLKVLFTSGHTRDMMGLDEQLRGGADLLQKPYSRTQLGRKLRDMFD 680 Query: 113 EVNR 116 R Sbjct: 681 GAGR 684 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ D R L + + G+ + + A ++++ PF +LLTD+ +P M G E Sbjct: 703 RILVVEDERDARDALCELIAMLGHTFEAAGSAEEALERLQLRPFDVLLTDLTLPGMSGFE 762 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 LAR A L +V+F +G A D++ P L KP+ L + ++ Sbjct: 763 LARAAVALRAAQRVVFSSGLDATV--SDASLPFAWTALRKPYSFDQLKDALD 812 >gi|116748835|ref|YP_845522.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697899|gb|ABK17087.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 721 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMPE 58 +++L+ +D+ ++ + L GYEV NG A + R E PF L++TD+ MP Sbjct: 597 ERVLIVDDEPELAIVTKRMLEFLGYEVEYRTNGIEALEAFRHRSKENPFDLVVTDLTMPH 656 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 + G +LAR L PDL V+ TGF+ Sbjct: 657 LTGEDLARELLRLQPDLPVILCTGFS 682 >gi|306829812|ref|ZP_07462999.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304427823|gb|EFM30916.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 245 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A+D ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWDLIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|291167113|gb|EFE29159.1| transcriptional regulator FeuP [Filifactor alocis ATCC 35896] Length = 225 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + L GYEV +C NG A+D E + L++ D+ +P MDG++ Sbjct: 2 RILVVEDEKTLCTSIANGLRIDGYEVDTCFNGDDAWDMALSESYDLIILDLNLPGMDGMD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R E D + ++ ++ + D L KPFH +L V L Sbjct: 62 VLRSIREEDSETGILILSARGQLQDKIDGLDNGANDYLCKPFHFEELEARVRSL 115 >gi|288929509|ref|ZP_06423353.1| response regulator [Prevotella sp. oral taxon 317 str. F0108] gi|288329014|gb|EFC67601.1| response regulator [Prevotella sp. oral taxon 317 str. F0108] Length = 521 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL A+D+ ++ + I L K GYEVV+ +NG A D+ ++ F L++ D +MP + G Sbjct: 5 NGLILWADDEIELLKAHIIFLEKKGYEVVTVSNGMDALDQCKQRNFDLIMLDEMMPGLSG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E +R E+ P V+ T + + K A L KP VN LLT+K Sbjct: 65 LETLQRIKEVQPATPVVMCTKSEEENIMEQAIGSKIADYLIKP------VNPSQILLTLK 118 >gi|150376823|ref|YP_001313419.1| two component, sigma54 specific, Fis family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031370|gb|ABR63486.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium medicae WSM419] Length = 447 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D++++RR +AL AG+ V + A +++ ++++DI MP MDG+ Sbjct: 5 RILLVDDEEELRRSSAQALELAGFRVDTFACAEDALERIAFSFHGVVISDIRMPGMDGMT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R E+D +L V+ +TG V L + + KPF + L + R L Sbjct: 65 FLQRIREIDAELPVILVTGHGDVQLAVRAMREGAYDFVEKPFTAQMLAGTIRRAL 119 >gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 232 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|289548273|ref|YP_003473261.1| Fis family transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181890|gb|ADC89134.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermocrinis albus DSM 14484] Length = 434 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 57/113 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ D+ L++ L + G VV G A V+ E F ++L D+ +P+MDG+E Sbjct: 2 RVLLVEDEVDLGSVLVEYLTERGASVVWVQRGGEALKTVQTESFDVVLLDLFLPDMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + E P +V+ +TG V + L+KP L ++ + R Sbjct: 62 LLKELRESAPLTEVVILTGHGTVRTAVSAVKMGAFDFLTKPCSLEEVFLALKR 114 >gi|262276397|ref|ZP_06054206.1| flagellar regulatory protein FleQ [Grimontia hollisae CIP 101886] gi|262220205|gb|EEY71521.1| flagellar regulatory protein FleQ [Grimontia hollisae CIP 101886] Length = 473 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 1/123 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ K+L+ EDD+ +R L+ L AGY+ + ++ A ++ E ++++D+ M M Sbjct: 1 MNQSKVLIVEDDEGLREALVDTLALAGYQWLEADSAEQALLLLKNETVDIVVSDVQMAGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ L R P+L V+ +T +A + + ++KPF L+N V+R Sbjct: 61 DGLGLLRNIKLNYPNLPVLLMTAYANIQDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAP 120 Query: 120 IKN 122 +K Sbjct: 121 VKT 123 >gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI++ EDD + R L LG GY V S ++G + + E L+L D+++P + Sbjct: 1 MAEKIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLG 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ R + DP+L ++ ++ A + L D L KPF L++L+ Sbjct: 61 GLEVVREIRKTDPELPILILSAKGQEGDKVAGLQLGADD-------YLVKPFGLKELLAR 113 Query: 114 VNRLL 118 ++ LL Sbjct: 114 IDALL 118 >gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 239 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 QKIL+ ED++ +R F+ L + G++ V +G A +KV + P ++ L D+++P +DG Sbjct: 2 QKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R E P L ++ +T A + KPF ++L+ +N L+ Sbjct: 62 FEVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALI 118 >gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] Length = 224 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + ++++ L +AGY SC +G A + E + L++ D ++P +DG+ Sbjct: 2 KILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRMLPSVDGMT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + L V+ ++ + V + + L+KPF +L+ V LL Sbjct: 62 ILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLL 116 >gi|323484472|ref|ZP_08089838.1| hypothetical protein HMPREF9474_01589 [Clostridium symbiosum WAL-14163] gi|323692533|ref|ZP_08106766.1| response regulator receiver protein [Clostridium symbiosum WAL-14673] gi|323402250|gb|EGA94582.1| hypothetical protein HMPREF9474_01589 [Clostridium symbiosum WAL-14163] gi|323503399|gb|EGB19228.1| response regulator receiver protein [Clostridium symbiosum WAL-14673] Length = 537 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KI+L +D++++R+ +I + AG+EV+ NG A +K+ + ++LTDI MP MD Sbjct: 5 KIMLVDDEEEVRKSIINKIDWADAGFEVIGDAENGKDALEKIEQNEPDVVLTDIKMPYMD 64 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+ +A +L P +K++ +GF Sbjct: 65 GLTMAETIRQLYPSVKIVIFSGF 87 >gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 230 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +ILL +D+ +MR+ L L Y + +NG A DK+ + + L+L DI+MPE+D Sbjct: 1 MNDRILLVDDEQEMRKLLRVCLTPYSYLLDEASNGEEAIDKISADFYDLILLDIMMPEVD 60 Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL + E LD V+ +T + L KPF ++L V ++ Sbjct: 61 GFELLKTLREHLDNKTPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVI 119 >gi|269961616|ref|ZP_06175978.1| Acetoacetate metabolism regulatory protein atoC [Vibrio harveyi 1DA3] gi|269833657|gb|EEZ87754.1| Acetoacetate metabolism regulatory protein atoC [Vibrio harveyi 1DA3] Length = 469 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKSNAVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R IK Sbjct: 63 LALLRNIKQNWPNLPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPIK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|260886647|ref|ZP_05897910.1| sporulation initiation phosphotransferase F [Selenomonas sputigena ATCC 35185] gi|330839522|ref|YP_004414102.1| response regulator receiver protein [Selenomonas sputigena ATCC 35185] gi|260863790|gb|EEX78290.1| sporulation initiation phosphotransferase F [Selenomonas sputigena ATCC 35185] gi|329747286|gb|AEC00643.1| response regulator receiver protein [Selenomonas sputigena ATCC 35185] Length = 120 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++L+ +D MR + L K GYE+V NG A +K +E L+ DI MPEM Sbjct: 1 MASRVLVVDDAAFMRMMVKDILSKNGYEIVGEAENGMKALEKYQELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + ++DP+ KV+ + A+ ++ + KPF ++ V + L Sbjct: 61 DGISAVKEIKKVDPNAKVVMCSAMGQQAMVIEAIQAGARDFIVKPFQADRVLEAVRKAL 119 >gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|149925123|ref|ZP_01913431.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149814000|gb|EDM73637.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 1521 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-----KVREEPFSLLLTDIVM 56 ++ +L+ EDD ++R + LG GY+V + + G +A + + L+LTD+VM Sbjct: 1394 DEHVLVVEDDPGVQRLVALLLGGHGYQVHTASGGEAALALAEELRAQGSQLDLVLTDVVM 1453 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P M G E+A L P + +F++G+ A+ A A L KPF L+ V Sbjct: 1454 PGMTGPEVAEAVRTLHPGVATLFMSGYTNDAMVRHGIATGGANFLQKPFTRPSLLQTVRS 1513 Query: 117 LL 118 L Sbjct: 1514 AL 1515 >gi|322375554|ref|ZP_08050066.1| DNA-binding response regulator [Streptococcus sp. C300] gi|321279262|gb|EFX56303.1| DNA-binding response regulator [Streptococcus sp. C300] Length = 251 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A+D ++++ ++LTDI MP Sbjct: 7 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWDLIQKQVPDIILTDINMP 66 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 67 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 119 >gi|120554916|ref|YP_959267.1| two component, sigma54 specific, Fis family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120324765|gb|ABM19080.1| two component, sigma54 specific, transcriptional regulator, Fis family [Marinobacter aquaeolei VT8] Length = 481 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+R L+ L A ++V + A + P ++++D+ MP M G E Sbjct: 5 QILIVEDDHDLREALVTTLELAKFQVREAASAEDALASLARAPVDMVVSDVNMPGMSGHE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L L P L +M IT + ++ + L KPF + LV V+R++ Sbjct: 65 LLAEVQRLYPGLPMMLITAYGQISHAVSAMQSGAIDYLVKPFEPQVLVEAVSRVV 119 >gi|168184125|ref|ZP_02618789.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794198|ref|YP_002861750.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672851|gb|EDT84812.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261611|gb|ACQ52644.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 223 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDILYKEYIDLIISDIMMPNMDGYT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + ++ ++ IT + + + KP + +++ V LL Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALL 117 >gi|294673424|ref|YP_003574040.1| sensor histidine kinase/response regulator [Prevotella ruminicola 23] gi|294473696|gb|ADE83085.1| sensor histidine kinase/response regulator [Prevotella ruminicola 23] Length = 409 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 61/117 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K +L +D+D L+K + Y ++ +NG A EE L+L DI MPEM+G Sbjct: 292 NKKTILVAEDEDSNYELVKIVLHKRYRLIRAHNGIEAVTMNEEEHPDLILMDIRMPEMNG 351 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ R E+D D V+ ++ +A D+ + ++KPF + +L+ V + L Sbjct: 352 LDATRIIKEIDTDTPVIALSAYAFEENIRDAKDAGCDEFMAKPFKVENLIEIVGKYL 408 >gi|281411689|ref|YP_003345768.1| response regulator receiver protein [Thermotoga naphthophila RKU-10] gi|281372792|gb|ADA66354.1| response regulator receiver protein [Thermotoga naphthophila RKU-10] Length = 122 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KILL +D +R+ + L K GYEV+ NG A +K+ E L++ DI+MP MD Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLLEFAPDLIVLDIMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK--NAKVLSKPFHLRDLVNEVNRLL 118 G + ++ E + ++ I A +S A KV+ KPF + EV LL Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGAKKVMRKPFSPSQFIEEVKHLL 120 >gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ EDD + R L LG GY V S +G + R E L++ D+++P M Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G+E+ R + DP+L ++ ++ A N +++ ++ L KPF L++L+ ++ Sbjct: 61 GLEVIREIRKEDPELPILILS-----AKNQETDKVAGLQLGADDYLGKPFGLKELLARID 115 >gi|4376185|gb|AAC61655.2| hybrid histidine protein kinase-phosphate acceptor regulatory protein CvgSY [Pseudomonas syringae pv. syringae] Length = 600 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 479 RTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMN 538 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 539 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 596 >gi|83310755|ref|YP_421019.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945596|dbj|BAE50460.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 445 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 57/113 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D++ MR + + LG AG++V A ++ + +L++D+ MP +DGI Sbjct: 5 QILFVDDEEPMRIAVKQWLGLAGFDVTVLARPEGALGRLSRDFPGILVSDVRMPGLDGIG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + A DPDL V+ +TG + L ++ + KPF L V R Sbjct: 65 LLKAAQAQDPDLPVILVTGHGDIPLAVEAMREGAYDFIEKPFAPERLAQAVGR 117 >gi|148265359|ref|YP_001232065.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398859|gb|ABQ27492.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 458 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +D++ +R L L GY + +G A V++E +L+L DI MP MD Sbjct: 1 MSATILVVDDEESIRTSLAGILEDEGYRTLFAVDGVEALSVVQQEMPALVLLDIWMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E ++ EL P L V+ ++G + S + KP L ++ VN Sbjct: 61 GMETLQKLKELYPVLTVIMMSGHGTIETAVKSTKMGAYDFVEKPLSLEKVLLSVN 115 >gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] Length = 228 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ + + L +AGY+V +GA A K + + L+++DI+MP MD Sbjct: 1 MTYKILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKFNQYQYDLIISDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRL 117 G + P+ +FIT A PD S + +SKPF R+LV V + Sbjct: 61 GYDFIGEVLLAKPNQPFLFIT---AKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNI 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] Length = 244 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ +R + L GY VV +G A DK + FSL+L DI+MP+ DG+E Sbjct: 25 KILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDNFSLVLLDIMMPKRDGLE 84 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +L D+ ++ +T + + +SKPF + LV V +L Sbjct: 85 VCAEIRKL-SDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSIL 138 >gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W] gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W] Length = 232 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|326204762|ref|ZP_08194617.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985133|gb|EGD45974.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 223 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD + + L K GY N+G A+D + ++ L+++DI+MP MDG EL Sbjct: 4 ILVVEDDQSLSKLFCTVLAKHGYSYYVANDGLEAWDIIEKQYIDLVISDIMMPNMDGYEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++ V+ IT + + KP ++ +++ VN LL Sbjct: 64 VKSLRDNGYNMPVLMITAKDTFEDMKNGFRVGTDDYMIKPVNVNEMILRVNALL 117 >gi|190892724|ref|YP_001979266.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Rhizobium etli CIAT 652] gi|190698003|gb|ACE92088.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Rhizobium etli CIAT 652] Length = 448 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + L +DD D+RR + L AG+ V + + +A D++ + ++TDI MPE+D Sbjct: 3 MAIPVALIDDDGDLRRATTQTLELAGFAVSAYDGAKAALDELAADFAGPVVTDIRMPEID 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G++L ++D DL V+ +TG + + + ++KPF LV V R Sbjct: 63 GLQLFTMLKDMDADLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFPADRLVQSVRR 118 >gi|220915997|ref|YP_002491301.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953851|gb|ACL64235.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 466 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++L+ +DD +R L + L G EV +G +A +K+ +P L+LTD+ MP +DG Sbjct: 10 GARVLVVDDDPGVRYTLREILASEGLEVEEATDGEAALEKLGAQPCPLVLTDLRMPRLDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + L R+ T P +V+ IT + ++ KPF +L+ V R Sbjct: 70 MALLRKITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRR 124 >gi|95931396|ref|ZP_01314106.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132552|gb|EAT14241.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 452 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 4/112 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +D+ MR L L + Y+V + NG A +KV + L+L D+ MPE+DG Sbjct: 4 NCSILIVDDESAMRHLLQTILEEEEYQVDAAENGKQALEKVEHNHYDLVLCDVRMPELDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAKVLSKPFHLRDLV 111 I R P L V+ ++ + ++ ALN N + +SKPF +++ Sbjct: 64 IGFLSRILPKFPSLTVIMMSAYGSLETALNCMKNGAYD--YISKPFRPDEII 113 >gi|289168318|ref|YP_003446587.1| response regulator [Streptococcus mitis B6] gi|288907885|emb|CBJ22725.1| response regulator [Streptococcus mitis B6] Length = 245 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A+D ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWDLIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|270292865|ref|ZP_06199076.1| DNA-binding response regulator [Streptococcus sp. M143] gi|270278844|gb|EFA24690.1| DNA-binding response regulator [Streptococcus sp. M143] Length = 251 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A+D ++++ ++LTDI MP Sbjct: 7 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWDLIQKQVPDIILTDINMP 66 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 67 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 119 >gi|254444971|ref|ZP_05058447.1| hypothetical protein VDG1235_3214 [Verrucomicrobiae bacterium DG1235] gi|198259279|gb|EDY83587.1| hypothetical protein VDG1235_3214 [Verrucomicrobiae bacterium DG1235] Length = 121 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL +D MR+ + L AG++V+ +G A+D V+ L++TD+ MP MDGI Sbjct: 2 KRILTVDDAATMRKMVGFTLKSAGHQVLEAADGIEAFDTVQRNQVDLVITDVNMPRMDGI 61 Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR L + ++ +T + A A + KPF L+ V+++L Sbjct: 62 ELTRRLRTLPAYRSVPIVLLTTESDPAKKSAGRAAGATGWIVKPFSQDQLLAVVSKVL 119 >gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae] gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae] Length = 231 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+A+DD ++ + L K GY V+ ++G D ++ +P LL+ DI+MP+MDG Sbjct: 3 NITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIMMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR E ++ ++F++ + ++KPF +LV VN L Sbjct: 63 FEVTRRIRE-KHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQL 118 >gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583] gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96] gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis] gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583] gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96] Length = 220 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDDD + + L +A YEV +C +G A+ K E + L++ DI++P M+ Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G EL R RA D ++ +T AL+ D N + ++KPF +R L+ Sbjct: 61 GHELLREFRAQN---DTPILMMT-----ALSDDENQIRAFDAEADDYVTKPFKMRILLKR 112 Query: 114 VNRLL 118 V LL Sbjct: 113 VEALL 117 >gi|154245063|ref|YP_001416021.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] gi|154159148|gb|ABS66364.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] Length = 127 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 ++L+ +D+ + L++ALG G+ +S GA A D +R +P ++LTD+ MP+MDGI Sbjct: 3 QVLVIDDEPEYLDELVEALGFLGHATISVGRGAEAIDTLRRDPAIRVILTDMRMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFI--TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + E P K+ F+ TG AA + A + KP DL + L Sbjct: 63 TLIKAVQETFPGRKIDFLMMTGHAAPGDIAQALAAGVVRCFRKPLAFEDLCAALVEL 119 >gi|194337739|ref|YP_002019533.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194310216|gb|ACF44916.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1275 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL +D+ + + + + K G+++ S ++ A + R+ P F LL+TD+ MPEM G+ Sbjct: 1154 ILFVDDEPTVLKMMTMMIAKLGFKIQSVSSPLQAIELFRKNPEQFDLLITDLTMPEMTGV 1213 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA +P L V+ +TG+ + N K L KP L +L + +N ++ Sbjct: 1214 ELADELHLKNPKLPVILMTGYEKDIEHTSHLNHHGICKFLKKPVKLIELASTINDVI 1270 >gi|283779436|ref|YP_003370191.1| response regulator receiver modulated diguanylate cyclase [Pirellula staleyi DSM 6068] gi|283437889|gb|ADB16331.1| response regulator receiver modulated diguanylate cyclase [Pirellula staleyi DSM 6068] Length = 569 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ K+LLA+DD M R L K L AGY V +GA A + ++ +L+TD MP MD Sbjct: 4 LSPKVLLADDDSAMLRLLSKWLESAGYNVQRAVDGAQAAAMIEQDCPQVLVTDWEMPHMD 63 Query: 61 GIELAR--RATELDPDLKVMFIT 81 G+EL R RA L + ++F+T Sbjct: 64 GLELVRWVRAQNLPNYVYIIFLT 86 >gi|257091671|ref|YP_003165312.1| two component Fis family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044195|gb|ACV33383.1| two component transcriptional regulator, Fis family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 188 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 60/112 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +DDD RR L +AL + GY V + +A K + + + D+ MP G+ L Sbjct: 16 LLLVDDDDAFRRVLARALERRGYAVSVAASVEAALVKAQAQAPEYAVVDLKMPGESGLRL 75 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ELDP+ +++ +TG+A++A ++ L+KP ++V +N+ Sbjct: 76 IDKLMELDPNTRIVMLTGYASIATAIEAIKLGAVHYLAKPCDADEIVAALNK 127 >gi|229590477|ref|YP_002872596.1| putative two-component response regulator [Pseudomonas fluorescens SBW25] gi|229362343|emb|CAY49245.1| putative two-component response regulator [Pseudomonas fluorescens SBW25] Length = 121 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 7/120 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE 58 + IL+ EDD +R ++ L + + V+ + A A V E L++TD+ +P+ Sbjct: 4 VTSTILVVEDDAIVRMLIVDVLEELAFSVLEAADAAEALAMVENTEHVIDLMMTDVGLPD 63 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG +LA + EL P L ++F +G+A + + P +V++KPF + L ++V +L Sbjct: 64 MDGKQLATKVRELRPTLPILFASGYAE-----NIDVPAGMQVIAKPFSIDQLRDKVKSML 118 >gi|197118047|ref|YP_002138474.1| response regulator [Geobacter bemidjiensis Bem] gi|253701163|ref|YP_003022352.1| response regulator receiver protein [Geobacter sp. M21] gi|197087407|gb|ACH38678.1| response regulator, putative [Geobacter bemidjiensis Bem] gi|251776013|gb|ACT18594.1| response regulator receiver protein [Geobacter sp. M21] Length = 126 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+++ R L + L K G+ V S NG A + +RE+ +L++TDI MPEM+GI Sbjct: 6 KRILVVDDEENARIGLSRLLAKEGFLVDSVANGFEALNYLREQEVNLIVTDINMPEMNGI 65 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 + P V+ IT + V Sbjct: 66 TFLKELNRSYPSSNVIMITAYGGV 89 >gi|70730616|ref|YP_260357.1| response regulator [Pseudomonas fluorescens Pf-5] gi|68344915|gb|AAY92521.1| response regulator [Pseudomonas fluorescens Pf-5] Length = 119 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 IL+ EDD +R ++ L + + V+ + +A + + + LL+TD+ +P M+G Sbjct: 8 ILVVEDDAIVRMLIVDVLEELEFSVLEADGSEAALSLLEDAGQHIDLLMTDVGLPGMNGR 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA RA L P L V+F +G+A P V+ KPF + L ++V +L Sbjct: 68 ELAERARTLRPQLPVLFASGYAE-----SIEVPAGMSVIGKPFSIDQLRDKVRSIL 118 >gi|148263613|ref|YP_001230319.1| response regulator receiver protein [Geobacter uraniireducens Rf4] gi|146397113|gb|ABQ25746.1| response regulator receiver protein [Geobacter uraniireducens Rf4] Length = 124 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPEMDG 61 +K+L+ ED+ D R + AL K GYEV+ G + +RE PF +++ DI +P +DG Sbjct: 2 KKVLVVEDNKDNMRLITYALQKVGYEVIPAETGEEGVELAIRERPFFIIM-DINLPGIDG 60 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E R RA+E D + ++ IT +A KP +V +++ + Sbjct: 61 LEATRRIRASEADGSVPIIAITSYAMFGDRDRVLQAGCTAYFEKPIDPLTIVERIHKAIG 120 Query: 120 IK 121 +K Sbjct: 121 VK 122 >gi|309792009|ref|ZP_07686487.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308226003|gb|EFO79753.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 119 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 53/117 (45%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ EDD RR L +GY VV +G +A +++ P +++TD+ MP M GIE+ Sbjct: 1 MIVEDDPATRRLYRFLLTNSGYVVVEAEDGLAALERLATTPCDVIITDMNMPRMGGIEMV 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R + + V+ +T F + + L+KPF +L V K Sbjct: 61 RTLRQQQSTIHVIMVTAFGTPDTEKHAYRAGVNEYLTKPFDFEELEQRVQLFFAHKQ 117 >gi|307634756|gb|ADI83684.2| sensor histidine kinase response regulator, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 754 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N++IL +D++D+ + L + GY+VV+ A +P F L++TD MP + Sbjct: 629 NERILYVDDEEDLVATTGEMLRRLGYDVVATTGSVEALRLFTAQPGLFDLIITDQTMPLL 688 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPD-------SNAPKNAKVLSKPFHLRDLVN 112 G EL R L PD+ V+ +GF +N D + A A VL KP ++ Sbjct: 689 TGTELTRELRRLRPDVPVLLCSGF----INQDERTILEEARAAGIADVLRKPVDRDEMAR 744 Query: 113 EVNRLL 118 V R+L Sbjct: 745 AVRRIL 750 >gi|296536069|ref|ZP_06898204.1| sensory box sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] gi|296263593|gb|EFH10083.1| sensory box sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] Length = 716 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ +L+ EDD+ +R +++ L + GY V+ + +A V LL TD+VMP + Sbjct: 589 HETVLVVEDDEAVREAVVEMLQELGYRVLRAGHAEAALTVVSSGVNVDLLFTDVVMPGPI 648 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RRA P +KV++ +G+ A A+ + ++LSKP+ DL +V L Sbjct: 649 PTPEMVRRAQARLPGMKVLYTSGYTANAIIHGGRLDPDVQLLSKPYRRDDLARQVRAAL 707 >gi|229590484|ref|YP_002872603.1| putative two-component sensor histidine kinase [Pseudomonas fluorescens SBW25] gi|229362350|emb|CAY49252.1| putative two-component sensor histidine kinase [Pseudomonas fluorescens SBW25] Length = 556 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + L + GY V + +A + E+ L+++D+ +P M+G Sbjct: 438 ETVLIVEDDPAVRVLVSAVLKELGYAFVEAGDADTALPIIESEQRIDLMISDVGLPGMNG 497 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA ++ P+LKV+FITG+A A ++++KPF L +V ++ Sbjct: 498 RQLAEIGRQIRPELKVLFITGYAEHAAVRGGFLDPGMQLITKPFTFDLLTAKVREMI 554 >gi|158421750|ref|YP_001523042.1| Fis-type transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158328639|dbj|BAF86124.1| Fis-type transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 442 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 8/119 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFS---LLLTDIVMPEM 59 K+L+ EDD+D+R ++AL G V+ GA ++V R P +++TDI MP M Sbjct: 5 KVLIVEDDEDVRLGCLQALELEGLTVI----GAKCVEQVPRMAPQDFPGVVVTDIRMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ R+ E D DL V+ ITG VA + + KPF LV V R L Sbjct: 61 DGMAYLRQLVEADADLPVILITGHGDVATAVQAMRDGAYDFIQKPFSPEQLVGVVQRAL 119 >gi|149174422|ref|ZP_01853048.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148846532|gb|EDL60869.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 648 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59 N+ ILL +D+ + R L GY+V++ N A + + LL++D+VMPEM Sbjct: 521 NEVILLIDDEAMLARTTRDILASLGYQVLTATNPREAIQAAQDFQGTIDLLISDVVMPEM 580 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 +G +L + P+LKV++I+G+ V + D K+ + L KPF L +V +++ Sbjct: 581 NGKDLFNTLKSIRPELKVLYISGY-TVNIIADHGVLKDGIIFLQKPFSRHQLAVKVRQVI 639 >gi|108760029|ref|YP_629504.1| sigma-54 dependent DNA-binding response regulator SasR [Myxococcus xanthus DK 1622] gi|12017937|gb|AAG45333.1|AF273214_1 SasR [Myxococcus xanthus] gi|108463909|gb|ABF89094.1| sigma-54 dependent DNA-binding response regulator SasR [Myxococcus xanthus DK 1622] Length = 477 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D D +R + L +AG+ V + +G R+ PF L++TD+ M MDGIE Sbjct: 11 RILVIDDHDTLREGMAVTLTRAGHTVSAVRSGQDGLAAYRKAPFDLVVTDLKMDGMDGIE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + LD VM +T F + + ++KPF L +V++ L + Sbjct: 71 VTKSLKALDAGAVVMVVTAFGTIETAVQAMQQGAYDFITKPFPPEVLRAKVDKGLEL 127 >gi|1711483|sp|P52942|SP0F_BACTK RecName: Full=Sporulation initiation phosphotransferase F; AltName: Full=Stage 0 sporulation protein F gi|520403|gb|AAA64587.1| Spo0F [Bacillus thuringiensis serovar kurstaki] Length = 122 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D +R L + K GY+ NG A D V+++ L++ D+ +P MD Sbjct: 1 MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E+D +KV+ ++ + + + ++ +KPF + ++ V L + Sbjct: 61 GIEIFKACKEIDESIKVILMSAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELAV 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|73748082|ref|YP_307321.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147668890|ref|YP_001213708.1| response regulator receiver protein [Dehalococcoides sp. BAV1] gi|289432108|ref|YP_003461981.1| response regulator receiver protein [Dehalococcoides sp. GT] gi|73659798|emb|CAI82405.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|146269838|gb|ABQ16830.1| response regulator receiver protein [Dehalococcoides sp. BAV1] gi|288945828|gb|ADC73525.1| response regulator receiver protein [Dehalococcoides sp. GT] Length = 123 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D++ +R+ + L K GY++V NG A + RE+ F L+L DI+MP++DG+ Sbjct: 5 KILIADDEEHIRQLVCSILDK-GYQIVQARNGEEAVKESREQNFDLILMDIMMPKLDGLA 63 Query: 64 LA--RRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 + + ++ +TG LN + A ++KPF+ ++L N+V+ + Sbjct: 64 ACCMLKGDKQTSSTPIIMLTG-VGYELNKKLSQQLGADGYITKPFNPQELRNKVSEFI 120 >gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 230 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 46/64 (71%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ ++ F+ + L + G+EV ++G +A+ +++ F LL+ D++MP+MDG+E Sbjct: 8 KILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKGVFDLLVLDVIMPKMDGLE 67 Query: 64 LARR 67 + R+ Sbjct: 68 VCRQ 71 >gi|326385623|ref|ZP_08207257.1| hypothetical protein Y88_1821 [Novosphingobium nitrogenifigens DSM 19370] gi|326209957|gb|EGD60740.1| hypothetical protein Y88_1821 [Novosphingobium nitrogenifigens DSM 19370] Length = 122 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R + AL AGY V +G K E F L++TD+ MP MD Sbjct: 1 MSASILTVDDSPSLRMAVRIALTGAGYAVTEAGDGTEGLAKAGAERFDLIITDLNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + R R + + + ++F+T + L + A L KPF+ LV ++L Sbjct: 61 GLTMIRELRKSPTNTGVPIIFLTTESEDGLKAQAKAAGATGWLVKPFNADQLVKIARKVL 120 >gi|300022124|ref|YP_003754735.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299523945|gb|ADJ22414.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 630 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 ++IL+ ED+ D+R ++ L + GYEVV G +A + ++ L+ +DI+MP M Sbjct: 509 ERILVVEDNGDVRALTVQRLERLGYEVVEFPTGTAAREALKGGLKVDLVFSDIIMPGGMT 568 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L +P L V+ TGFA A + + A + +L KP+ RDL V + L Sbjct: 569 GVDLRNWICAFEPALPVILTTGFAGDAGDIATIADE-WPILRKPYGQRDLAEIVRKTL 625 >gi|254283466|ref|ZP_04958434.1| two-component response regulator [gamma proteobacterium NOR51-B] gi|219679669|gb|EED36018.1| two-component response regulator [gamma proteobacterium NOR51-B] Length = 125 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ILL ED++ R L++ L +AG+ V+ +GA A D++R+E +L+L DI +P MDG Sbjct: 6 NNSILLVEDNEVNRDMLVRRLTRAGHTVICAGDGAQALDRMRDEQPALVLMDINLPVMDG 65 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R RA + + ++ +T A + + A +KP L+ ++ L+ Sbjct: 66 CTASREARADDAIAHIPIIALTAHAMASDREQALAAGCNDYATKPIDFPQLLAKIAELM 124 >gi|120435017|ref|YP_860703.1| two-component system response regulator [Gramella forsetii KT0803] gi|117577167|emb|CAL65636.1| two-component system response regulator [Gramella forsetii KT0803] Length = 240 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L YEV NG ++K +++ F L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGTVLKDYLAMNDYEVTHAKNGMEGFEKFKKDDFDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + ++ ++F+T A A+ D K KV L+KPF Sbjct: 65 FTLAKEIREKNEEIPIIFLT---AKAMKED--VLKGYKVGADDYLNKPF 108 >gi|307565274|ref|ZP_07627767.1| response regulator receiver domain protein [Prevotella amnii CRIS 21A-A] gi|307345943|gb|EFN91287.1| response regulator receiver domain protein [Prevotella amnii CRIS 21A-A] Length = 235 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GYE C +G + + + F + + D++MP+MDG Sbjct: 6 KILLCEDDENLGTLLSEYLQAKGYEAELCPDGEAGFKAFLKSKFDICVLDVMMPKMDGFA 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA +++ ++ ++F+T A + + K+ ++KPF + +LV + +L Sbjct: 66 LATEIRQVNAEIPIIFLT-----AKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|218887636|ref|YP_002436957.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758590|gb|ACL09489.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 685 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 54/104 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL +D++ +R L +L AGY+V + +G A + ++LTDI MP + Sbjct: 1 MGASILLVDDEEGIRTVLGISLADAGYDVTTAASGEEALARFAAHRPDIVLTDIKMPGLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 G++L R DP+++V+ +TG + L S L+KP Sbjct: 61 GLDLLERLKAADPEVEVIMLTGHGDMDLAIQSLKRDATDFLTKP 104 >gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 214 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +DD +R + + L G+ V S +G + ++ +E L+++DIVMP+MDG Sbjct: 2 QKILIVDDDRTLRAAITRYLEDRGFVVNSAASGLAGFNSFSQEVPDLIVSDIVMPDMDGF 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 EL R T+ L +F++ + + + L KPFH R+L+ ++ Sbjct: 62 ELCTKIRNTDAGQLLPFIFLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKI 115 >gi|327193726|gb|EGE60605.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Rhizobium etli CNPAF512] Length = 448 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + L +DD D+RR + L AG+ V + ++ +A D++ + ++TDI MPE+D Sbjct: 3 MAIPVALIDDDGDLRRATAQTLELAGFAVSAYDSAKTALDELAADFAGPVVTDIRMPEID 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G++L ++D DL V+ +TG + + + ++KPF LV V R Sbjct: 63 GLQLFTMLRDMDADLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFPADRLVQSVRR 118 >gi|258514030|ref|YP_003190252.1| response regulator receiver protein [Desulfotomaculum acetoxidans DSM 771] gi|257777735|gb|ACV61629.1| response regulator receiver protein [Desulfotomaculum acetoxidans DSM 771] Length = 121 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR + + K GYEVV NG A +E L+ DI MPEM Sbjct: 1 MTKRILIVDDAAFMRMMIKNIVVKHGYEVVGEAENGLQAIQLYKEVSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ + ++DP+ ++ + A+ ++ + KPF ++ + R+L Sbjct: 61 DGIQGVKEIRKIDPNANIIVCSAMGQQAMVLEAIQSGAKDFVVKPFQQDRIIQAIERVL 119 >gi|225414514|ref|ZP_03761703.1| hypothetical protein CLOSTASPAR_05737 [Clostridium asparagiforme DSM 15981] gi|225041958|gb|EEG52204.1| hypothetical protein CLOSTASPAR_05737 [Clostridium asparagiforme DSM 15981] Length = 186 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 59/114 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LL EDD + + KAL AG+EV + N A +R+ +++TD MP+M+G Sbjct: 69 RRVLLVEDDKKILKLFDKALTAAGFEVTAIGNPLDAEAVLRQGGIDVIVTDYAMPKMNGA 128 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++A A L KV+ ITG + ++L KP + L++ VNR Sbjct: 129 QIAALARTLGLHCKVILITGLVEDQVLEYYRKNLIHELLLKPLECQALIDAVNR 182 >gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 237 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 43/67 (64%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L GYE V NNG A D+ E F +L D+++P+++G+E Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62 Query: 64 LARRATE 70 +ARR + Sbjct: 63 IARRVRQ 69 >gi|298207240|ref|YP_003715419.1| two-component system, transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] gi|83849876|gb|EAP87744.1| two-component system, transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] Length = 234 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 16/126 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILLA+DD D L + L +EV +G A+D ++ F + + D++MP++D Sbjct: 1 MEKRILLADDDIDFGTTLKQYLELNKFEVFWAKDGVEAFDLLKMHSFDICIVDVMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--------VLSKPFHLRDLVN 112 G L+++ ++ P +F+T N P K +SKPF + +L+ Sbjct: 61 GFSLSKKISKKFPATPFLFLTA--------RKNKPDRIKGLSIGADDYISKPFEVEELIL 112 Query: 113 EVNRLL 118 +N ++ Sbjct: 113 RINNII 118 >gi|320450181|ref|YP_004202277.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01] gi|320150350|gb|ADW21728.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01] Length = 220 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LL EDD D+ R + +AL + G++VV + A++ + + PF L+ D+ +PE + Sbjct: 1 MGTRLLLVEDDPDLGRTVTQALEEHGFQVVWATSQEEAWEALWDVPFQALVLDVRLPEGE 60 Query: 61 --GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRL 117 G LAR E ++F+T A AL+ + + + L+KPF L +LV + L Sbjct: 61 EAGFHLARTLREAGFTQPILFLT--AKDALDDRLHGLELGEDYLTKPFALSELVARIRAL 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|308271995|emb|CBX28603.1| hypothetical protein N47_G39270 [uncultured Desulfobacterium sp.] Length = 491 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L GY V GA + +R+ F ++L D++MPEM G ++ Sbjct: 15 ILVVDDEVRIRDACRLVLEDCGYGVCVAATGAEGLELIRDRHFDIILLDLMMPEMSGFDV 74 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLR 108 + L PD ++ ITG+A + + D+ + KPF HLR Sbjct: 75 LAKVKALHPDTVIIVITGYATLEHSLDAMKKGAFDFIPKPFTPEHLR 121 >gi|228926973|ref|ZP_04090039.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832708|gb|EEM78279.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 76 CRRIRE-KHSLPIIFLSA 92 >gi|94265549|ref|ZP_01289296.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93453949|gb|EAT04299.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 730 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 45/83 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++ +D D R L+ L GY+ G +A D + E+P L L D+VMP MDGI Sbjct: 17 RIMVIDDRPDDRESLVALLEAHGYQATGLPGGRAALDHLTEQPADLALVDLVMPGMDGIT 76 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + + P+L V+ IT +A + Sbjct: 77 TLQELKRVAPELDVILITAYATL 99 >gi|86156932|ref|YP_463717.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773443|gb|ABC80280.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 443 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 62/115 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D+ + RF+ + L G+EVV GA A ++ E F +++TD+ MP++DG+ Sbjct: 2 SRVLVVDDEPKLGRFVQEMLELDGHEVVRAGGGAEALARLGEGAFDVVVTDLRMPQVDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R A P +V+ +T + ++ A ++KPF + +L V RL Sbjct: 62 AVLRAARARTPPPEVVMMTAHGSAESAVEAMKAGAADYVTKPFPMDELRLRVRRL 116 >gi|89901053|ref|YP_523524.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345790|gb|ABD69993.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 676 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 13/120 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 +LL EDD D+RR + L GY V+ ++ A A D + P +L++D+VMP MDG Sbjct: 565 VLLVEDDPDVRRVIRLQLVDLGYPVIEADHAADALDLLSTVPSVGILISDMVMPGSMDGR 624 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLT 119 L A+ P++K + I+G+A +P+NA +L KPF +L ++ L++ Sbjct: 625 TLCCEASLSAPNVKTLLISGYAM--------SPENAIGPPLLKKPFTAVELQRALDGLMS 676 >gi|328952068|ref|YP_004369402.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328452392|gb|AEB08221.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 455 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + + L AGYEV + ++G +A + R L++TD+ MP M GIEL Sbjct: 4 ILVVDDEKNYLLVMETLLAGAGYEVFTADSGETALELTRRNDLDLVVTDMKMPRMSGIEL 63 Query: 65 ARRATELDPDLKVMFITGFAAV----------ALNPDSNAPKNAKVL---SKPFHLRDLV 111 + ++ PDL V+ +T + V A + KN ++L +K LR L+ Sbjct: 64 LEQLKQVYPDLPVIMMTAYGTVEKAVEAMKKGAFDYILKPFKNEEILLTIAKALELRHLL 123 Query: 112 NEVNRL 117 E RL Sbjct: 124 TENRRL 129 >gi|227536221|ref|ZP_03966270.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772180|ref|ZP_07082050.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227243924|gb|EEI93939.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760483|gb|EFK57309.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 225 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + F++K L + G+ V C + A + V E F +++ D+++P +DGI+ Sbjct: 2 QILLVEDDARISDFIVKGLEENGFNVQLCVSAEEAREVVFEHSFDVIIMDVMLPGIDGIQ 61 Query: 64 LA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L R L P L + + DS A L KPFH ++L++ +N L Sbjct: 62 LTKMIRYKKNLTPILMLSALNEAEDKIAALDSGAD---DFLVKPFHFKELISRINAL 115 >gi|188579326|ref|YP_001922771.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342824|gb|ACB78236.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 809 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 Q+IL+ ED+ ++ RF + L G+E N A D + E F + +D+VMP M Sbjct: 681 QRILVVEDNVEVGRFATQILQDLGFETRWAANAEEALDALGTEGAAFEAVFSDVVMPGMG 740 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 GIELA+R P+L V+ +G++ V Sbjct: 741 GIELAKRLRRTHPNLPVILTSGYSHV 766 >gi|302344713|ref|YP_003809242.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641326|gb|ADK86648.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfarculus baarsii DSM 2075] Length = 467 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 48/82 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +RR L L + GY V + G A +K + F +++ D+ MP++DGI + Sbjct: 16 VLVVDDEQHVRRVLEVMLQRQGYGVETAGGGGEALEKFAADVFDVVILDLKMPDIDGITV 75 Query: 65 ARRATELDPDLKVMFITGFAAV 86 +LDPD V+ IT +A+V Sbjct: 76 LGHLRQLDPDQTVIMITAYASV 97 >gi|301167508|emb|CBW27091.1| putative two-component system response regulator [Bacteriovorax marinus SJ] Length = 126 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D+ D+ + + GY+ ++ + G A K+R F ++++D MP +G Sbjct: 6 NFRVLIVDDEPDILELMEEEFNYYGYQTMTADCGNDAISKLRSHQFDIIVSDYKMPNGNG 65 Query: 62 I----ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + E+ A E PD F++G A +++ D+ K SKPF L DL+ E+ + Sbjct: 66 MAVLDEVNTMAAETRPDF--FFVSGQADISIK-DAIDAGAKKFFSKPFDLDDLIKEIEKE 122 Query: 118 LTIK 121 L+ K Sbjct: 123 LSSK 126 >gi|262166238|ref|ZP_06033975.1| sigma-54 dependent response regulator [Vibrio mimicus VM223] gi|262025954|gb|EEY44622.1| sigma-54 dependent response regulator [Vibrio mimicus VM223] Length = 478 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEEALLKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P++ V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNMPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|288942690|ref|YP_003444930.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Allochromatium vinosum DSM 180] gi|288898062|gb|ADC63898.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Allochromatium vinosum DSM 180] Length = 475 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 60/112 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL KA +V NG + ++ E ++LTDI MP +DG+EL Sbjct: 7 VWVIDDDRSIRWVLDRALRKAEMQVTCFPNGVGILESLQREQPDVILTDIRMPGIDGLEL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R+ T P L V+ +T + + + + L KPF L + V++V+R Sbjct: 67 LRQVTSRYPGLPVIIMTAHSDLDSAVSAFQDGAFEYLPKPFDLDEAVSQVSR 118 >gi|220909913|ref|YP_002485224.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219866524|gb|ACL46863.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 406 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 11/125 (8%) Query: 4 KILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+A+D D RFLI+A L + GY + +G A K+ P L+L D++MPEMDG Sbjct: 14 KILVADDAPD-NRFLIEAILEEQGYALDFAEDGREALTKIEAAPPQLVLLDVMMPEMDGY 72 Query: 63 ELARRATELDPDLK---VMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E+ RR + +P+L ++ IT + VA D+ A + KP +L V L Sbjct: 73 EVTRRVRQ-NPNLSYIPILLITAYEQVTVAAGLDTGA---DDFIRKPLEPEELSARVRSL 128 Query: 118 LTIKN 122 L +K+ Sbjct: 129 LRLKH 133 >gi|163758090|ref|ZP_02165178.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43] gi|162284379|gb|EDQ34662.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43] Length = 223 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+ + +FL + L GY + NG + + R E F ++ D+++P MDG E Sbjct: 2 KLLVVEDDERIWQFLFRGLSAEGYSLTWEANGRAGLETARREQFDAIILDLMLPGMDGRE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 + RR K++ +T AL ++ K ++ LSKPF +L + L Sbjct: 62 ICRRLRAEGVSTKILMLT-----ALETTADLVKGLRMGADDYLSKPFAFDELTARLEVL 115 >gi|86747671|ref|YP_484167.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86570699|gb|ABD05256.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1053 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMP-EM 59 + IL+ EDD +R ++ L GY +S N +A + F LL TD+VMP Sbjct: 917 TETILVVEDDAMVRSYVNAQLKSLGYTTLSVGNATAALSIGDSDTQFDLLFTDVVMPGPY 976 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G++LA + P LKV+F +G++ AL + + +LSKP+ DL + L+ Sbjct: 977 NGVQLAAEMSLRRPGLKVLFTSGYSENALIHNDRIDSDILLLSKPYRRSDLARMIRLALS 1036 >gi|295109625|emb|CBL23578.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Ruminococcus obeum A2-162] Length = 509 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 6 LLAEDDDDMRRFLIKAL---GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L DD+ + R +K L + +V +NG A +R E L+LTDI MP MDG+ Sbjct: 4 VLIVDDEKIEREGLKYLLSREEGERKVFEASNGKQALQIIRTEDIQLILTDIKMPHMDGL 63 Query: 63 ELARRATELDPDLKVMFITGFA 84 EL+RRA E +P L+++ +G++ Sbjct: 64 ELSRRAKEENPALQIVIFSGYS 85 >gi|218781037|ref|YP_002432355.1| response regulator receiver modulated serine phosphatase [Desulfatibacillum alkenivorans AK-01] gi|218762421|gb|ACL04887.1| response regulator receiver modulated serine phosphatase [Desulfatibacillum alkenivorans AK-01] Length = 406 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 41/63 (65%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R L + L Y+VV +G A++ ++E P +L+++D +MP MDG+EL Sbjct: 6 ILIVDDDPGVRHLLKEGLSAWDYQVVEAQDGLEAWEILKETPVTLVISDWMMPGMDGVEL 65 Query: 65 ARR 67 RR Sbjct: 66 CRR 68 >gi|159043745|ref|YP_001532539.1| two component, sigma54 specific, transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911505|gb|ABV92938.1| two component, sigma54 specific, transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 448 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 56/116 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL +D++ +R + L A ++V +A ++ + +L+TDI MP MDG Sbjct: 6 ETILFVDDEEPLRHAAAQTLQLAEFDVACFAEAEAALPRIARDFPGILVTDIRMPGMDGT 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RA E+DP+ V+ +TG V L S L KP+ LV V R L Sbjct: 66 TLMARALEIDPEFPVILVTGHGDVDLAVQSMRDGAYDFLEKPYAPSRLVASVRRAL 121 >gi|114566398|ref|YP_753552.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337333|gb|ABI68181.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 120 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR + L K GY VV NG A +K +E L+ DI MPEM Sbjct: 1 MGKRVLIVDDAAFMRMMIKDILSKNGYTVVGEAENGNVAIEKYKELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + +DP +++ + A+ D+ + KPF ++ V++ L Sbjct: 61 DGIAAVKEIKAVDPAARIIMCSAMGQQAMVIDAIQAGAKDFIVKPFQPERVIEAVSKALV 120 >gi|332884576|gb|EGK04833.1| hypothetical protein HMPREF9456_00586 [Dysgonomonas mossii DSM 22836] Length = 230 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 57/111 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +DD L + L + Y V NNG A++ + L+L DI MPEMDG + Sbjct: 5 KILLVDDDLRNSMLLKRFLEEEDYRVTYANNGKEAWELFQPLKPDLVLLDINMPEMDGFQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +AR+ E D + + F+T ++ + K + KPF+ +L+ ++ Sbjct: 65 VARKIREKDKSVIIFFLTDRTEISDRLKGFSLKGNDYIPKPFYPEELIAKI 115 >gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 237 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 43/67 (64%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L GYE V NNG A D+ E F +L D+++P+++G+E Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62 Query: 64 LARRATE 70 +ARR + Sbjct: 63 IARRVRQ 69 >gi|196233248|ref|ZP_03132094.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196222719|gb|EDY17243.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 720 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + IL+ ED++ +R+ + L GY V+ ++ + A + LL+TDIVMPEM Sbjct: 589 ETILVVEDEEVVRQLICTVLKDVGYNVLCASSPSEALQLSAKHLGNIDLLVTDIVMPEMH 648 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G LAR+ L ++KV++++G++ ++ VL KPF L+ +V +L Sbjct: 649 GPTLARQILGLRSEVKVLYVSGYSENDISDQGVLEPGLDVLQKPFSKLFLLRKVREVLEG 708 Query: 121 KN 122 N Sbjct: 709 NN 710 >gi|170759997|ref|YP_001785638.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406986|gb|ACA55397.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 225 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L + GYEV + NG+SA +++++ P + + DI++P+++ Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQREGYEVTTFFNGSSAIERIKDVP-DIWILDIMLPDIN 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] Length = 228 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 +K+L+ ED+ ++R F++ L +AGYE + G A ++R P + L DI++P+MDG Sbjct: 2 KKVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRNPDIKVALLDIMLPDMDG 61 Query: 62 IELARRATELDPDLKVMFIT 81 E+ RR D + ++ +T Sbjct: 62 FEVCRRIRASDSQIGIIMLT 81 >gi|258621102|ref|ZP_05716136.1| Acetoacetate metabolism regulatory protein atoC [Vibrio mimicus VM573] gi|258586490|gb|EEW11205.1| Acetoacetate metabolism regulatory protein atoC [Vibrio mimicus VM573] Length = 478 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEEALLKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P++ V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNMPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|219847337|ref|YP_002461770.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541596|gb|ACL23334.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 793 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ +L EDD ++R+ ++ L + GY V+ + A ++ + +L+TD+V+P+ Sbjct: 673 HEVVLFVEDDPNVRQLGVRLLREHGYTVLEAKDANEALQLAQQYGDRVQILITDVVLPQT 732 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ LAR+ P L ++ ++G+ L S P VL+KPF+ L++ + + + Sbjct: 733 DGLTLARQLQSALPHLHIILMSGYLQRMLADGSTPP--YPVLAKPFNRYQLLSLIRQTI 789 >gi|196234507|ref|ZP_03133331.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196221434|gb|EDY15980.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 806 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED + L L + GY+V NG A D R SL+++D+VMPEMDG E Sbjct: 13 EILVAEDSPTQAQRLRHILEQQGYKVTVAGNGRIALDAARRSRPSLIISDVVMPEMDGYE 72 Query: 64 LARRATELDPDL 75 L RR DPDL Sbjct: 73 LCRRIKS-DPDL 83 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIVMPE 58 ++L+ +DD + L L G+ + + + G D E F + TD+ MP Sbjct: 682 RLLVIDDDPLLIMALRDILEGDGHSITAADGGQRGIDAFLEAQSTGATFDAVFTDLGMPY 741 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +DG +++ E P V+ +TG+ + P +VL+KP LR+L +++L Sbjct: 742 VDGRKVSAAVKEASPATPVILLTGWGQRLMTEGDVPPHVDRVLNKPPKLRELREALSQL 800 >gi|84386129|ref|ZP_00989158.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio splendidus 12B01] gi|84378899|gb|EAP95753.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio splendidus 12B01] Length = 446 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 55/103 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+I L EDD +R+ + L AG++V + G A + V + F +++D+ +P++DG+ Sbjct: 2 QRIALIEDDAIVRQATSQWLQLAGFDVTAFEVGQDALNAVEQGDFQTIISDVRLPDIDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 EL R L PD+ V+ ITG V + + + KPF Sbjct: 62 ELLGRFKHLVPDVPVILITGHGDVDMAVKALQQGAYDFIEKPF 104 >gi|160934161|ref|ZP_02081548.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753] gi|156866834|gb|EDO60206.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753] Length = 947 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 7/122 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 ILLAED+D I+ L G EV NG A + R+ P F ++L DI+MPEM+G Sbjct: 821 ILLAEDNDLNAEIAIELLQTQGAEVYRAENGKQALELFRDSPEGTFQVILMDIMMPEMNG 880 Query: 62 IELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 +E A L PD + + I A D + NA + +SKP + L E+N + Sbjct: 881 LEAASSIRALKHPDAERIPIIAMTANTFKEDVESALNAGMTGFVSKPIDVAYLYQELNSV 940 Query: 118 LT 119 L+ Sbjct: 941 LS 942 >gi|3402841|emb|CAA76904.1| NtrC-type response regulator [Eubacterium acidaminophilum] Length = 461 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 53/83 (63%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D+ R L + L Y+ + +G A K++++ + L+L+D++MP MDG+E Sbjct: 8 RILIVDDEDEYRDILKRILEINAYDADTAVSGQDALVKIKKDEYDLVLSDLIMPGMDGVE 67 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L ++ D++V+ +TG+ ++ Sbjct: 68 LLGEIKKIKKDIEVILVTGYGSI 90 >gi|51892678|ref|YP_075369.1| two-component response regulator involved in modulation of flagellar, CheY [Symbiobacterium thermophilum IAM 14863] gi|51856367|dbj|BAD40525.1| two-component response regulator involved in modulation of flagellar, CheY [Symbiobacterium thermophilum IAM 14863] Length = 119 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D MR K L + G+EV NG A + L+L DI MP MDGI Sbjct: 3 KILLVDDAAFMRMRCAKLLTEHGFEVAEAENGQEAIAMYQSYRPDLVLMDITMPVMDGIT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R LDPD KV+ ++ + ++ + KPF +++ V + + Sbjct: 63 ATREIKNLDPDAKVVMVSALGQQTMVIEAIKAGAKDFVVKPFEPEKILSTVRKFV 117 >gi|27380380|ref|NP_771909.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27353544|dbj|BAC50534.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 825 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDG 61 ++L+ ED+DD+ +F + L GY V N ++A + E F+ L+ +D++MP M+G Sbjct: 704 RVLVVEDNDDVGQFSTELLEDLGYVVRRVANASAALAILGENEFAVDLVFSDVIMPGMNG 763 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +ELA E P L V+ +G++ V NA + +++ KP+ + L + + +T K Sbjct: 764 VELAGIIRERYPGLPVVLTSGYSNVLA---ENAHRGFELIQKPYSVESLSRILRKAITEK 820 >gi|330880005|gb|EGH14154.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 953 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ ED+ +R + L GY V + ++ LL++D+ +P ++ Sbjct: 834 ETVLVVEDEPTVRLLVTDVLDDLGYIAVEAADSTGGLRVLQSNTRIDLLISDVGLPGGLN 893 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A + PDLKV+FITG+A AL D+ V++KPF + LV + LL Sbjct: 894 GRQMADAARVIRPDLKVLFITGYAENALLEDNQLDPGMSVMTKPFAVDTLVARIQELL 951 >gi|308271625|emb|CBX28233.1| Uncharacterized protein yfhA [uncultured Desulfobacterium sp.] Length = 467 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD ++ R L L GY S ++ A + REE F L L D+ + DGIE Sbjct: 18 KILIVDDDLNILRVLQMRLEAEGYATTSISDVQKAIEVTREEEFDLALVDLKLARKDGIE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L ++ P++ V+ +T F + ++ ++KPF R L LL IKN Sbjct: 78 LMGILHDIRPEMPVIILTAFGTIESTVNAMQKGAYSYITKPFDHRQL------LLQIKN 130 >gi|260575063|ref|ZP_05843064.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodobacter sp. SW2] gi|259022685|gb|EEW25980.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodobacter sp. SW2] Length = 454 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E R ++L P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLEALPRISKLRPGLPVIVISAQNTIMTAVKAAEAEAYDYLPKPFDLPDLMKRSARALDV 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|240142356|ref|YP_002966866.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium extorquens AM1] gi|240012300|gb|ACS43525.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium extorquens AM1] Length = 1072 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED + R ++ L AG+E + +G A +K F L+L DI MP MDGI Sbjct: 834 RILVVEDLEANRELVVSILSAAGHETEAVVDGVEAVEKAERGGFDLILMDIQMPRMDGIA 893 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 ARR EL + I A L A + A + + KPF ++ L V R Sbjct: 894 AARRIRELPGPAGEVPIVAMTANVLPSQVAAIREAGMDDHVGKPFEIQALERTVAR 949 >gi|228945524|ref|ZP_04107874.1| Two-component response regulator vanR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814042|gb|EEM60313.1| Two-component response regulator vanR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 190 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 76 CRRIRE-KHSLPIIFLSA 92 >gi|197119652|ref|YP_002140079.1| sigma-54-dependent transcriptional response regulator AtoC [Geobacter bemidjiensis Bem] gi|197089012|gb|ACH40283.1| sigma-54-dependent transcriptional response regulator AtoC [Geobacter bemidjiensis Bem] Length = 458 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 54/120 (45%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D++ +R L L GY V +G A E L+L DI MP+MD Sbjct: 1 MTETILIVDDEEGIRSSLAGILEDEGYRTVCAADGVEALALCARELPGLVLLDIWMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE +R E P L V+ ++G + S + KP L +V V L + Sbjct: 61 GIETLQRLKESHPFLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALAM 120 >gi|158523274|ref|YP_001531144.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512100|gb|ABW69067.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1134 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 +L+ ED+ + + + + L + GY V++ A A E + LL+TD++MPEM G Sbjct: 1017 VLVVEDEASVLKLVQRVLERLGYNVLTALGPARAITMADEHQGTIDLLITDVIMPEMSGR 1076 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +LA+ + PDL+V++++G+ A + + + KPF +D+ +V Sbjct: 1077 DLAKTMKKRFPDLRVLYMSGYTADIIGRRGELEADVNFIQKPFSNQDMAEKV 1128 >gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72] gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp. BH72] Length = 228 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + +++AL + GY V NGA A V +PF LL+ D+ +P + GIE Sbjct: 2 RILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPRLPGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + +R L V+ +T V L+KPF L +L V L Sbjct: 62 VLKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRAL 115 >gi|219848955|ref|YP_002463388.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219543214|gb|ACL24952.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 128 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 12/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D R + L + GY VV+ +G A ++ + L++TD+ MP MDGIEL Sbjct: 4 IMIVDDYIPSHRLMSFVLEQHGYTVVTAVDGEQALRRLEQFAVDLVVTDLTMPRMDGIEL 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 R RA E L ++ IT A + + K A V L+KPF DLV E+ RL Sbjct: 64 VRAIRADERYATLPIIMIT-----ASPKEQDEVKAAGVGVNAFLTKPFDSDDLVGEIERL 118 Query: 118 L 118 + Sbjct: 119 M 119 >gi|222053368|ref|YP_002535730.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221562657|gb|ACM18629.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 946 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 + +L+AED+ +++ L L GY VV+ +G + R+ + L++ D++MP Sbjct: 825 GETVLVAEDNSEVKALLEDVLQGYGYSVVTALDGHDCVESFRKKRDDIDLIIMDVMMPRK 884 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E +L P +KV+FI+G+ L+ A +N L+KP L+ +V +L Sbjct: 885 NGKEAYAEIEKLKPGMKVIFISGYTGDILHSADLAEENLNFLAKPLSPNRLLTKVREVL 943 >gi|94494936|ref|ZP_01301517.1| sensory box histidine kinase/response regulator [Sphingomonas sp. SKA58] gi|94425202|gb|EAT10222.1| sensory box histidine kinase/response regulator [Sphingomonas sp. SKA58] Length = 996 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +LL EDD +R + L GYEV +G +A + P LL++D+ +P M+G + Sbjct: 875 VLLVEDDPSVRLLVCDVLDDLGYEVWQAPDGQTAITLAQTMPRMDLLISDVGLPGMNGRQ 934 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA PDL+++FITG+A A + ++++KPF + L ++ ++ Sbjct: 935 LADILRGDRPDLRILFITGYAERATVRSEFLGQGMEMIAKPFAIDVLSAKIREMI 989 >gi|45658908|ref|YP_002994.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602153|gb|AAS71631.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 558 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+AED++ + + K L K GY+ V +NG A ++ +L DI MPE++G Sbjct: 433 NLNILVAEDNETNQMLIKKILEKLGYKPVIVSNGIEALHHIKMYKTDVLFLDIQMPELNG 492 Query: 62 IELARRATEL-DPDLK--VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE A+ T+ D ++ ++ +T A+ D A + LSKPFH ++ + +N+ + Sbjct: 493 IEAAKILTQQNDSSIRPYIIAMTANASQTDKEDCMASGIDQYLSKPFHKEEIADLLNQFI 552 Query: 119 TIK 121 + K Sbjct: 553 SHK 555 >gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 228 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++L+ +DD + FL ++L GY+V N+G A V P L++ DI+MP++D Sbjct: 1 MSLRVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E+ RR ++ +T AV+ L KPF L +L+ + L Sbjct: 61 GLEVCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRAL 117 >gi|330720537|gb|EGG98819.1| Sensor protein torS [gamma proteobacterium IMCC2047] Length = 995 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDDD R L + G++V S A + E F ++LTDI +P MDG+E Sbjct: 739 KVLLVEDDDINRMVSQSFLEEFGHQVSSATTAEKAIEMFAENHFDIILTDISLPGMDGLE 798 Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 L +R E DPD + I +A L + + + + L KP+ L + R + Sbjct: 799 LTKRIREFEDPDEASIPIVAISAHVLQQGGDYYQRSGISAFLGKPYEPETLNQVLQRCFS 858 Query: 120 IK 121 K Sbjct: 859 YK 860 >gi|297569352|ref|YP_003690696.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296925267|gb|ADH86077.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 450 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58 M + + +D++ M R+L K++ + GYEV + ++ + + E+ +LL DI MPE Sbjct: 1 MKGTVYICDDEEGMLRYLRKSVSEWGYEVKTHSSALALLRSLAEDGPRGGVLLLDIRMPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 MDG+E+ R L P+L V+ +TG+ + ++ L+KPF Sbjct: 61 MDGLEVLSRVKALRPELGVVMMTGYGTIDSAVEAIKLGAFDYLTKPF 107 >gi|300023202|ref|YP_003755813.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Hyphomicrobium denitrificans ATCC 51888] gi|299525023|gb|ADJ23492.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Hyphomicrobium denitrificans ATCC 51888] Length = 481 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R L +AL +AG+ + N A+ + V + +++TD+VMP+ + +L Sbjct: 6 VLIADDDTAIRTVLNQALARAGFAPRATGNAATLWRWVSQGEGDVVITDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R +L PDL ++ ++ + + + L KPF L ++V ++R L+ Sbjct: 66 IPRIKKLRPDLPIIVMSAQNTLMTALTATEKGAFEYLPKPFDLNEVVAVISRALS 120 >gi|224370332|ref|YP_002604496.1| predicted fusion protein, periplasmic substrate-binding protein (N-terminal) / sensory box regulatory protein (C-terminal) [Desulfobacterium autotrophicum HRM2] gi|223693049|gb|ACN16332.1| predicted fusion protein, periplasmic substrate-binding protein (N-terminal) / sensory box regulatory protein (C-terminal) [Desulfobacterium autotrophicum HRM2] Length = 926 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + I++ +D++ + + L GYE+ + N A AY + ++P F L++TD+ MP++ Sbjct: 806 EHIMVVDDEESILLSTQELLKDYGYEITAFENSADAYAEFEKDPLKFDLVITDMTMPQLS 865 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL+ + L +L ++ TG+ + A K + KP R L+ + L+ Sbjct: 866 GVELSTKMLNLRSELPIILCTGYCGTYDEKKALALGVKKYVQKPIDSRTLLGLIRELI 923 >gi|154503236|ref|ZP_02040296.1| hypothetical protein RUMGNA_01060 [Ruminococcus gnavus ATCC 29149] gi|153796230|gb|EDN78650.1| hypothetical protein RUMGNA_01060 [Ruminococcus gnavus ATCC 29149] Length = 573 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+LL +D+ +R + + G G+E+V C NG +A + ++E P ++LTDI MP +D Sbjct: 42 KVLLVDDEILVREAISAKIEWGHLGFELVGDCENGKAAIEFLKENPVDVVLTDICMPYLD 101 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ L++ E P +++ +G++ + K A+ L KP ++L + R+ Sbjct: 102 GMGLSKYIYENMPQTRIIIFSGYSDFEYAKQAIQYKVAEYLLKPVTAKELTEVLTRI 158 >gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92] gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92] Length = 230 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 14/119 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AEDD ++R L L GYE + +NG AY L+L DI+MP MDG Sbjct: 2 KVLIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMHQPDLVLLDIMMPGMDGYA 61 Query: 64 LARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + R+ +L+ + V+FIT + + L D + KPF R+++ +N Sbjct: 62 VCRKIRQLNEQVPVIFITAKSEEIDQVLGLELGADD-------YIKKPFGTREVIARIN 113 >gi|330876008|gb|EGH10157.1| sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 471 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R L + L AGY + + A +PFSL+++D+ MP MDG +L Sbjct: 5 VLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMDGHQL 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 65 LGLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|312960839|ref|ZP_07775344.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311284497|gb|EFQ63073.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 556 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + L + GY V + +A + E+ LL++D+ +P M+G Sbjct: 438 ETVLIVEDDPAVRVLVCAVLKELGYAYVEAGDANAAVPIIESEQRIDLLISDVGLPGMNG 497 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA ++ P+L+V+FITG+A A ++++KPF L +V ++ Sbjct: 498 RQLAEIGRQIRPELRVLFITGYAEHAAVRGGFLEPGMQLITKPFTFDLLTAKVREMI 554 >gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 237 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 43/67 (64%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L GYE V NNG A D+ E F +L D+++P+++G+E Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62 Query: 64 LARRATE 70 +ARR + Sbjct: 63 IARRVRQ 69 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] gi|300075072|gb|ADJ64471.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL +D +R+ ++ +L AGY V +G A +K + + F L+LTD MP MD Sbjct: 1 MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMD 60 Query: 61 GIELARRATELDPDLKV---MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ L R EL +V M T F+ + A L KPF + L V ++ Sbjct: 61 GLTLIRSLRELTSYARVPILMLTTEFSD-EMKAKGKAAGANGWLVKPFDPQRLTEVVRKV 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|258626175|ref|ZP_05721023.1| Acetoacetate metabolism regulatory protein atoC [Vibrio mimicus VM603] gi|258581530|gb|EEW06431.1| Acetoacetate metabolism regulatory protein atoC [Vibrio mimicus VM603] Length = 478 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEEALLKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P++ V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNMPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201] gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201] Length = 242 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 76 CRRIRE-KHSLPIIFLSA 92 >gi|39995882|ref|NP_951833.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982646|gb|AAR34106.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298504896|gb|ADI83619.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 465 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR---EEPFSLLLTDIVMP 57 + KIL+ +D++ +RR+L K +EV + +G S ++ + +LL D+ MP Sbjct: 2 LKAKILICDDEEGIRRYLQKMFQAKEFEVETFADGTSLLARIEAGTDGDADILLQDVRMP 61 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +MDGIE+ +R +L P L V+ +T F + D+ ++KPF Sbjct: 62 DMDGIEVLKRVKKLRPSLPVVVMTAFGTIDSAVDAIKLGAYDYVTKPF 109 >gi|15643234|ref|NP_228278.1| response regulator [Thermotoga maritima MSB8] gi|251836870|pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism gi|251836872|pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism gi|251836873|pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism gi|4980976|gb|AAD35552.1|AE001724_10 response regulator [Thermotoga maritima MSB8] Length = 122 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+LL +D +R+ + L K GYEV+ NG A +K+ E L++ DI+MP MD Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 G + ++ E + ++ I A +S A KV+ KPF + EV LL Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 >gi|330892264|gb|EGH24925.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 461 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAGKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|256420033|ref|YP_003120686.1| Fis family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256034941|gb|ACU58485.1| two component, sigma54 specific, transcriptional regulator, Fis family [Chitinophaga pinensis DSM 2588] Length = 489 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ ++ L K LGK G++V + +GA+A ++E+ F L+L D + + DG Sbjct: 2 RNILIIDDEINICTLLSKFLGKHGFKVDTTMSGATALKMMKEKTFDLVLCDYRLKDTDGA 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +L + +++P V+ ITG+ V + D LSKP + +++N V++ Sbjct: 62 QLLQDILQINPRTIVIIITGYTDVRVAVDMVKNGAYDYLSKPLYPDEILNLVHK 115 >gi|224367825|ref|YP_002601988.1| sigma-54 dependent DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] gi|223690541|gb|ACN13824.1| sigma-54 dependent DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] Length = 442 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +I++ +D+ + L + L K GY V + +N A + + P L+++D+ MP M+ Sbjct: 1 MKPRIVIIDDEPITLKQLRRILEKEGYGVSAFSNPQRALQHLEQAPCDLVISDVQMPLMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNE 113 G++L R PD +V+ ITG+A++ ++ L KPF +RD VN+ Sbjct: 61 GMDLMTRVKARFPDTEVILITGYASLDGAVEATKEGAFYYLEKPFTPTQVRDRVNQ 116 >gi|254521021|ref|ZP_05133076.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219718612|gb|EED37137.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 120 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 5/117 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE- 58 M +L ED+DD+R +++AL G++V +NG A +R F++++TD MP+ Sbjct: 1 MPIHVLFVEDEDDLRSVVVEALTSQGFQVTPASNGDEALVLLRGSAKFAVVVTDFNMPDS 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 DG+E+A A P +VM +G L P P+N + L KP+ R LV ++ Sbjct: 61 ADGLEVAAEAAVAQPQARVMLASGLQRSQLPP---LPENVRFLPKPYRFRQLVTAIH 114 >gi|197103437|ref|YP_002128815.1| response regulator receiver domain protein (CheY-like receiver) [Phenylobacterium zucineum HLK1] gi|196480713|gb|ACG80240.1| response regulator receiver domain protein (CheY-like receiver) [Phenylobacterium zucineum HLK1] Length = 131 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 7/115 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPE-MD 60 +L ED+ + + AL + G+ V S + GA A ++ E P F+ L+TDI + + Sbjct: 9 VLYVEDEPAVLELGVSALEEGGFRVASASTGAGAIRQL-ETPDAAFAALVTDIDLGDNSS 67 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G E+ARRA EL PDL V++++G +A S + +L+KPF L LV V+ Sbjct: 68 GWEVARRARELFPDLPVVYVSGGSAHEWA--SRGVPGSVMLTKPFALAQLVVAVS 120 >gi|24216557|ref|NP_714038.1| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|24197874|gb|AAN51056.1| histidine kinase and response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 440 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+AED++ + + K L K GY+ V +NG A ++ +L DI MPE++G Sbjct: 315 NLNILVAEDNETNQMLIKKILEKLGYKPVIVSNGIEALHHIKMYKTDVLFLDIQMPELNG 374 Query: 62 IELARRATEL-DPDLK--VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE A+ T+ D ++ ++ +T A+ D A + LSKPFH ++ + +N+ + Sbjct: 375 IEAAKILTQQNDSSIRPYIIAMTANASQTDKEDCMASGIDQYLSKPFHKEEIADLLNQFI 434 Query: 119 TIK 121 + K Sbjct: 435 SHK 437 >gi|56477555|ref|YP_159144.1| sensory box histidine kinase/response regulator,C-terminal part [Aromatoleum aromaticum EbN1] gi|56313598|emb|CAI08243.1| Sensory box histidine kinase/response regulator, C-terminal part [Aromatoleum aromaticum EbN1] Length = 439 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 +LL EDD ++RR + L G+ V+ +G A+ + P ++L+TD VMP + G Sbjct: 177 VLLVEDDSEVRRVIRLQLTALGHSVIEAADGVEAWSLIESVPEIAVLVTDTVMPGAIGGR 236 Query: 63 ELARRATELDPDLKVMFITGFA---AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL R+ L P L ++ ITG+A A+A + P VL KPF L + +L Sbjct: 237 ELVARSRALRPRLPILMITGYASDNALAGTAQLDVP----VLRKPFDQNTLATSLAAILD 292 Query: 120 I 120 + Sbjct: 293 V 293 >gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 232 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|320354178|ref|YP_004195517.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122680|gb|ADW18226.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 465 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 55/109 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q++L+ +D+++MR L L + GY+V +G + D + F ++L DI MP MDG Sbjct: 4 KQRLLIIDDEENMRHMLTSVLSRLGYQVEVAAHGQAGLDALATGDFDVVLCDIRMPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +E R+A ++ ++ F +V + +SKPF ++ Sbjct: 64 LEFLRQAIAAGISATIIMMSAFGSVDTALAAMRLGAYDYISKPFKAEEI 112 >gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 244 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++L+ EDD ++R L +L AG+EVV+ +G +A + L++ D+++P+ DG Sbjct: 16 GARLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDFDG 75 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR V+F+T AV ++KPF L +++ ++ +L Sbjct: 76 FAVVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAIL 132 >gi|182416433|ref|YP_001821499.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177843647|gb|ACB77899.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 841 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 + L+ +D++ +R + L G+E ++ +G A + R P F+L+L D+ MP MDG Sbjct: 717 RALVVDDEESVREIACRMLRHFGFEPIAAADGREALELFRAAPGAFALVLLDLSMPVMDG 776 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDL 110 E LDP V+ ++G+ PDS + P+ + V+ KPF L Sbjct: 777 RETFEEIFRLDPTTPVLLMSGYNKTGA-PDSFDDPRLSGVVQKPFETATL 825 >gi|330964355|gb|EGH64615.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 696 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + I++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 575 RTIMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALRVLESDVRIDLLVTDVGLPGGMN 634 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 635 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMI 692 >gi|311106449|ref|YP_003979302.1| sensory box protein 6 [Achromobacter xylosoxidans A8] gi|310761138|gb|ADP16587.1| sensory box protein 6 [Achromobacter xylosoxidans A8] Length = 1000 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 +L+ EDD ++R + + L + G EV++ +G + + ++ LL+TD+ +P ++G + Sbjct: 875 VLVVEDDANVREMVCECLAELGLEVLAAADGEAGLEFLQSARGIDLLVTDVGLPGLNGRQ 934 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A P L+V+ +TG+A A + +++ KPF L L V +L Sbjct: 935 LADAARVARPGLRVLLMTGYAESAARGQGFLEQGLELIVKPFRLDKLSERVQGML 989 >gi|262170878|ref|ZP_06038556.1| sigma-54 dependent response regulator [Vibrio mimicus MB-451] gi|261891954|gb|EEY37940.1| sigma-54 dependent response regulator [Vibrio mimicus MB-451] Length = 478 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R LI L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEEALLKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P++ V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRSIKQHWPNMPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|227892745|ref|ZP_04010550.1| two component response regulator [Lactobacillus ultunensis DSM 16047] gi|227865386|gb|EEJ72807.1| two component response regulator [Lactobacillus ultunensis DSM 16047] Length = 221 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + R L A+ AGY+V +NG A + +E + +++ DI+MP MDGI Sbjct: 2 RILVAEDEPQLLRVLTAAMKHAGYDVDPVDNGLKAVEHAKESSYDVIILDIMMPVMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T A V DS A ++KPF L++L+ Sbjct: 62 ALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGAD---DYITKPFSLKELL 109 >gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016] gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 237 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD +R + L G+ V NG A K+ EE L + DI+MP+MDG E Sbjct: 15 KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ D+ ++ +T + ++ L+KPF + +L+ + LL Sbjct: 75 FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALL 129 >gi|153812731|ref|ZP_01965399.1| hypothetical protein RUMOBE_03138 [Ruminococcus obeum ATCC 29174] gi|149831247|gb|EDM86336.1| hypothetical protein RUMOBE_03138 [Ruminococcus obeum ATCC 29174] Length = 509 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYE--VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L+ +D+ R L L + E V +NG A +R E L+LTDI MP MDG+ Sbjct: 4 VLIVDDEKIEREGLKYLLSREEGERNVFEASNGKQALQIIRSEDIQLVLTDIKMPHMDGL 63 Query: 63 ELARRATELDPDLKVMFITGFA 84 EL+RRA E +P L+++ +G++ Sbjct: 64 ELSRRAKEENPALQIIIFSGYS 85 >gi|126661765|ref|ZP_01732764.1| response regulatory protein, sigma 54 related [Flavobacteria bacterium BAL38] gi|126625144|gb|EAZ95833.1| response regulatory protein, sigma 54 related [Flavobacteria bacterium BAL38] Length = 387 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K L + Y V +G +KV+ E + L+L DI MP+MDG Sbjct: 3 KILIIEDEAAIRRVLTKILSEENDTYVVDEAEDGLQGVEKVKNEDYDLILCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E+ ++ P++ ++ I+G + ++ +SKP L L+N V L K Sbjct: 63 VEVLEAIKKIKPEIPMVMISGHGDLETAINTMRLGAFDYISKPPDLNRLLNTVRNALDKK 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|146309308|ref|YP_001189773.1| two component, sigma54 specific, Fis family transcriptional regulator [Pseudomonas mendocina ymp] gi|145577509|gb|ABP87041.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas mendocina ymp] Length = 461 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R+ L + L AG +V+S + ++ + ++++DI MP +DG++ Sbjct: 12 QVLLIDDDAHLRQALSQTLDLAGLKVLSLGDAQGLAQRIPADWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ E D +L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 72 LLQQLRERDTELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFANEALLDSVRRALELR 129 >gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614] gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614] Length = 228 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-VREEPFSLLLTDIVMPEMDGI 62 +IL+AEDD + L ++L +AG++V +NG AYD+ + + F + L D ++P MDG+ Sbjct: 2 RILVAEDDVRLAGLLEESLAEAGWQVEVVHNGRVAYDRLLSDTSFDVALLDWMLPGMDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +ARR L L ++ +T V D L KPF L +L+ + L Sbjct: 62 TVARRLRGLGLALPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRAL 116 >gi|328470507|gb|EGF41418.1| sensor histidine kinase/response regulator LuxN [Vibrio parahaemolyticus 10329] Length = 682 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + I++ +D++ +R+F L K G+EVV +G A D + +E L+L DI MP MD Sbjct: 562 IKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMD 621 Query: 61 GIELARR 67 G+E +RR Sbjct: 622 GVEASRR 628 >gi|308126420|ref|ZP_05910146.2| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|308108853|gb|EFO46393.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 662 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + I++ +D++ +R+F L K G+EVV +G A D + +E L+L DI MP MD Sbjct: 542 IKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMD 601 Query: 61 GIELARR 67 G+E +RR Sbjct: 602 GVEASRR 608 >gi|296876973|ref|ZP_06901017.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432008|gb|EFH17811.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 244 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED++ +R+ L + + + N NG A++K +E+P +LLTDI MP+M+G Sbjct: 4 IMIVEDEELIRQGLTSLVDYEQFGMTVINQAENGREAWEKFQEQPADILLTDINMPQMNG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 ++LA E P ++F+TG+ Sbjct: 64 LDLAHLVKEKSPSCHIIFLTGY 85 >gi|317152778|ref|YP_004120826.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316943029|gb|ADU62080.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 879 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 IL EDD+D + L GY+V + SA VR P F LL+TD MP + G Sbjct: 760 HILFVEDDEDQLDATPRLLEVMGYQVTPVRSPESALALVRMSPCPFDLLITDYDMPGLSG 819 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +LARR +L P L V+ ++G A+ S+ P +V+ KP+ DL + L + Sbjct: 820 TQLARRVGDLVPLLPVILVSGREDAAMAA-SDLPNIRQVVIKPYDKDDLATAIASALAV 877 >gi|218528519|ref|YP_002419335.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520822|gb|ACK81407.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1225 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%) Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIELARRATELDP 73 R +++ L + GY + +G S + VR LL+TD+ +P ++G +LA A L P Sbjct: 1118 RDLVVEVLRELGYRAIEAPDGPSGLEIVRSSARIDLLVTDVGLPGLNGRQLADHARTLRP 1177 Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L+V+F+TG+A A + ++++KPF + L + ++ + Sbjct: 1178 ELRVLFMTGYAENATFGGGPLDPDMQMITKPFSVERLAARIREMMEL 1224 >gi|153836341|ref|ZP_01989008.1| sensor histidine kinase/response regulator LuxN [Vibrio parahaemolyticus AQ3810] gi|308094467|ref|ZP_05889865.2| CAI-1 autoinducer sensor kinase/phosphatase CqsS [Vibrio parahaemolyticus AN-5034] gi|308095462|ref|ZP_05906045.2| CAI-1 autoinducer sensor kinase/phosphatase CqsS (Cholerae quorum-sensing sensor) [Vibrio parahaemolyticus Peru-466] gi|308125916|ref|ZP_05777982.2| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] gi|149750243|gb|EDM60988.1| sensor histidine kinase/response regulator LuxN [Vibrio parahaemolyticus AQ3810] gi|308087146|gb|EFO36841.1| CAI-1 autoinducer sensor kinase/phosphatase CqsS (Cholerae quorum-sensing sensor) [Vibrio parahaemolyticus Peru-466] gi|308090516|gb|EFO40211.1| CAI-1 autoinducer sensor kinase/phosphatase CqsS [Vibrio parahaemolyticus AN-5034] gi|308114418|gb|EFO51958.1| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] Length = 662 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + I++ +D++ +R+F L K G+EVV +G A D + +E L+L DI MP MD Sbjct: 542 IKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMD 601 Query: 61 GIELARR 67 G+E +RR Sbjct: 602 GVEASRR 608 >gi|104782260|ref|YP_608758.1| response regulator [Pseudomonas entomophila L48] gi|95111247|emb|CAK15967.1| putative response regulator [Pseudomonas entomophila L48] Length = 116 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 68/116 (58%), Gaps = 7/116 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +L+ EDDD +R +++ L + GY+ + + A+A + + +P +LL+TD+ +P+M G Sbjct: 3 LLVVEDDDIVRMLIVEVLDELGYKAIEADCAAAALKILEDPGQPLALLMTDVGLPDMRGE 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA +A ++ P L V+F +G+A P+ ++ KPF + L ++V +L Sbjct: 63 ELAGKARQVRPLLPVLFASGYAE-----SVEVPEGMHLIGKPFSIDQLRDKVVAIL 113 >gi|28900565|ref|NP_800220.1| sensor histidine kinase/response regulator LuxN [Vibrio parahaemolyticus RIMD 2210633] gi|28808945|dbj|BAC62053.1| sensor histidine kinase/response regulator LuxN [Vibrio parahaemolyticus RIMD 2210633] Length = 682 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + I++ +D++ +R+F L K G+EVV +G A D + +E L+L DI MP MD Sbjct: 562 IKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMD 621 Query: 61 GIELARR 67 G+E +RR Sbjct: 622 GVEASRR 628 >gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 76 CRRIRE-KHSLPIIFLSA 92 >gi|220919116|ref|YP_002494420.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956970|gb|ACL67354.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 138 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 7/115 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDDDD+R + L AG++V GA A + +++ D+++P+ G+ Sbjct: 11 KVLLVEDDDDLRVAMAGCLAGAGFDVTLVATGADAVRAALRDHPQVMVIDVMLPDSGGLG 70 Query: 64 LA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +A R EL+ + V+F TG AA A+ AP A VL KPF R LV+ V Sbjct: 71 VAEALHRYPELE-QVPVLFTTGLAAPAVK-ALLAP--APVLFKPFGRRQLVSAVR 121 >gi|148269592|ref|YP_001244052.1| response regulator receiver protein [Thermotoga petrophila RKU-1] gi|147735136|gb|ABQ46476.1| response regulator receiver protein [Thermotoga petrophila RKU-1] Length = 122 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KILL +D +R+ + L K GYEV+ NG A +K+ E L++ DI+MP MD Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 G + ++ E + ++ I A +S A KV+ KPF + EV LL Sbjct: 61 GFTVLKKLQEKENWKRIPVIVLTAKGGEEDESLAFSLGARKVMRKPFSPSQFIEEVKHLL 120 >gi|86160307|ref|YP_467092.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776818|gb|ABC83655.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 138 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 7/115 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDDDD+R + L AG++V GA A + +++ D+++P+ G+ Sbjct: 11 KVLLVEDDDDLRVAMAGCLAGAGFDVTLVATGADAVRAALRDHPQVMVIDVMLPDSGGLG 70 Query: 64 LA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +A R EL+ + V+F TG AA A+ AP A VL KPF R LV+ V Sbjct: 71 VAEALHRYPELE-QVPVLFTTGLAAPAVK-ALLAP--APVLFKPFGRRQLVSAVR 121 >gi|78221922|ref|YP_383669.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193177|gb|ABB30944.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 460 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 63/117 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++I+L ++++ + R + L +GY V A ++ R + L+++DI MP MDG Sbjct: 4 NKRIMLIDNEEGLCRMMEAVLLDSGYGVKGYTRSFEAVEEFRPGDWDLVVSDIKMPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ +R +P + V+ IT +A V ++ + +L+KPF +L+ V L Sbjct: 64 LEVLQRIKAKEPAIPVIMITAYATVEMSIQALRRGAYDMLTKPFEPEELLYRVKNAL 120 >gi|51893225|ref|YP_075916.1| sigma-54-dependent transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51856914|dbj|BAD41072.1| sigma-54-dependent transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 464 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 58/106 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ R L + LG+ GY V + +G A + + EE F + D+ MP +DGI Sbjct: 6 LLIADDEASFRELLQRRLGRKGYLVKAVGSGTEALEALAEEEFDAAIFDMKMPGLDGIAT 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 RRA E+ P L V+ +TG ++ ++ L+KP +L +L Sbjct: 66 LRRAREIQPSLPVLILTGHGSIETAVEAIRAGAYDYLTKPCNLAEL 111 >gi|163848872|ref|YP_001636916.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526828|ref|YP_002571299.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163670161|gb|ABY36527.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450707|gb|ACM54973.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1043 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 4/106 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 N+ ILL ED+ +R+ + L + GY V+ + A ++ + LL+TD+V+P Sbjct: 923 NETILLVEDEPGVRQMAARLLREQGYTVLEATHAQEAMALAQQHGDELHLLITDVVLPHT 982 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 DGI LA P L+V+ ++G+ + S P VL+KPF Sbjct: 983 DGITLAYELQASFPQLRVILMSGYLQRVMANGSEPP--YPVLNKPF 1026 >gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya zeae Ech1591] gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591] Length = 955 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 51/106 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D RR L LG GY+V++ N+G A D + + P ++LTD+ MP MDG Sbjct: 831 LLVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVLAKNPVDIVLTDVNMPNMDGYRF 890 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ E+ L V+ +T A LSKP L L Sbjct: 891 TQQLREMGQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLDTL 936 >gi|163750552|ref|ZP_02157790.1| flagellar regulatory protein C [Shewanella benthica KT99] gi|161329707|gb|EDQ00696.1| flagellar regulatory protein C [Shewanella benthica KT99] Length = 453 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE V + A K++ E F L+++D+ M + GI Sbjct: 5 KLLLVEDDHSLREALLDTLLLAQYECVDVASAEDAIIKIKAESFDLVISDVQMEGIGGIG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + L V+ +T +A + NA K K+ L+KPF L+N+V+R L Sbjct: 65 LLNYLRQNQAQLPVLLMTAYATI-----DNAVKAIKLGAVDYLAKPFAPEVLLNQVSRYL 119 Query: 119 TIK 121 K Sbjct: 120 KPK 122 >gi|89069983|ref|ZP_01157315.1| nitrogen metabolism transcriptional regulator, NtrC [Oceanicola granulosus HTCC2516] gi|89044431|gb|EAR50562.1| nitrogen metabolism transcriptional regulator, NtrC [Oceanicola granulosus HTCC2516] Length = 456 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + ++ + V E L+++D++MP+ + Sbjct: 1 MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVIMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E +E P L V+ I+ + + + L KPF L DL+ +R L I Sbjct: 61 GLEQLPMISEKRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRASRALDI 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|313673598|ref|YP_004051709.1| response regulator receiver modulated metal dependent phosphohydrolase [Calditerrivibrio nitroreducens DSM 19672] gi|312940354|gb|ADR19546.1| response regulator receiver modulated metal dependent phosphohydrolase [Calditerrivibrio nitroreducens DSM 19672] Length = 469 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+D +R + L + Y + +G A D + R++ +++TD+ MPEMDGI Sbjct: 7 ILVVDDEDYIRDSIKLILEEEKYGFIEAEDGFKALDILEKRKDEIDIVMTDLKMPEMDGI 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + E PD+ V+ ITG+ ++ ++ ++KPF++ D+ +++ R L K Sbjct: 67 TLLKIIKERYPDMTVIIITGYPSLETAIETLQIGADDYITKPFNVNDVHSKLKRALESKK 126 >gi|294140286|ref|YP_003556264.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326755|dbj|BAJ01486.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1214 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+++LLAED R L K+G+EV +NG A E + L+L D+ MPEMDG Sbjct: 910 NKRLLLAEDSPSNRVIAGAMLAKSGFEVEFAHNGKEAVKMSAEHDYGLILMDMRMPEMDG 969 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +E R PD ++ +T + D + NA + ++KP + +LV +N L Sbjct: 970 VEATRAILLAQPDTVILAMTANVS---KEDVESCLNAGMKDFVAKPVNQVELVKAINNWL 1026 >gi|190895483|ref|YP_001985775.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190699428|gb|ACE93512.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 923 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 + IL+AEDD+ +R +I+ L GY V+ + SA + LL TD+VMP + Sbjct: 657 TETILVAEDDEGVRATVIEMLSDLGYYVLKAKDAQSALTVIESGAHIDLLFTDVVMPGTL 716 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELAR A PD+ V++ +G+ ++ ++LSKP+ DL ++ +L Sbjct: 717 KSPELARLARARLPDIAVLYTSGYTEDSIVHGGRLDPGLELLSKPYTREDLARKIRHVLA 776 Query: 120 IK 121 + Sbjct: 777 SR 778 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R + L GY+V+ +G D + +++ D+ +P M G Sbjct: 808 KLLLVEDDAFIRMDTAEILHDLGYDVIEAESGEQGADILDHTLVDIIVVDLGLPGMSGSA 867 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 A RA E P + ++F TG + + PDSN + +L KPF+ Sbjct: 868 FAARAREALPSVGLVFATGGSDL---PDSNHLSGSVLLPKPFN 907 >gi|323496557|ref|ZP_08101611.1| flagellar regulatory protein FleQ [Vibrio sinaloensis DSM 21326] gi|323318401|gb|EGA71358.1| flagellar regulatory protein FleQ [Vibrio sinaloensis DSM 21326] Length = 468 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + ++ A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADSAEDALVKLKANNVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRNIKQHWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 232 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|150015427|ref|YP_001307681.1| response regulator receiver protein [Clostridium beijerinckii NCIMB 8052] gi|149901892|gb|ABR32725.1| response regulator receiver protein [Clostridium beijerinckii NCIMB 8052] Length = 121 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN KIL+ +D MR L +L K GY+VV NG +K ++ L+L DI MP M Sbjct: 1 MNDKILICDDARFMRVTLKNSLEKEGYQVVDEAENGEVLIEKYKQLNPDLILMDITMPVM 60 Query: 60 DGIELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DGI E++P+ KV+ + G + + K+ + KPF L+ V R+ Sbjct: 61 DGISALSSIMEINPNAKVIICSAMGQGDIVIKAIKTGAKD--FIVKPFRNERLIQSVRRV 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] Length = 1389 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L AGY+V +G A R L+++D++MP +DG+E Sbjct: 641 RVLVADDNADMREYLARLLTAAGYQVTEVTDGVEALAAARRRTPDLVVSDVMMPRLDGLE 700 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R DP + V+ ++ A + + L KPF +L+ V Sbjct: 701 LVSR-LRADPRTASVPVVLLSARAGQEASIEGLRAGADDYLVKPFAAAELLARV 753 >gi|256829586|ref|YP_003158314.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256578762|gb|ACU89898.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 139 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 56/107 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++D R +IK L K G + + G A + EEP +++ D+ MP MDG+E+ Sbjct: 6 VLLVDDEEDFLRTIIKRLAKRGLKAQGASRGEQALAMLAEEPRDVVVLDVKMPGMDGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 +R P +V+ +TG A++ + L KP L DL+ Sbjct: 66 LKRIKTNWPSTEVIMLTGHASIDAAMEGMNCGAFDYLMKPADLEDLL 112 >gi|182415942|ref|YP_001821008.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177843156|gb|ACB77408.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 711 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 11/110 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-VREEP-FSLLLTDIVMP-E 58 ++ IL+ ED+ +R F+ + LG GY V++ ++G A + R P LLLTD+VMP Sbjct: 588 SETILVVEDEPGVRMFVTRLLGSRGYTVLAASDGIEALEHWARHGPSIDLLLTDVVMPGG 647 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPF 105 + G +LA P LKV+F +G+ NP S+ P + L+KP+ Sbjct: 648 ITGHQLAATLLRQKPSLKVIFTSGY-----NPQTAGSSRPPSHSYLAKPY 692 >gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 225 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD +R + L G+ V NG A K+ EE L + DI+MP+MDG E Sbjct: 3 KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ D+ ++ +T + ++ L+KPF + +L+ + LL Sbjct: 63 FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALL 117 >gi|13472175|ref|NP_103742.1| sensor/response regulator hybrid protein [Mesorhizobium loti MAFF303099] gi|14022920|dbj|BAB49528.1| probable sensor/response regulator hybrid protein [Mesorhizobium loti MAFF303099] Length = 690 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 10/115 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-ASAYDKVREEP--FSLLLTDIVMPEMDG 61 ILL +D +R+ ++L + G+ VV+C G A A + P F +++TD MP + G Sbjct: 566 ILLIDDSSVLRQLTAQSLQQRGF-VVTCAAGSAEALAIIERAPHEFDVIVTDFAMPLVSG 624 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNA--PKNAKVLSKPFHLRDLVNEV 114 +E+ R A L D + ITG+A + DS A P + +L+KPF +DL+ + Sbjct: 625 VEVIRFARNLRSDWPAIIITGYA----DADSIADRPSDVPLLNKPFREKDLIESI 675 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 +LA DDD+ I+ + E+V+ +G A + ++ F+++L D++MP +DG E A Sbjct: 26 VLAVDDDERNLLAIQEVLAPIAEIVAVRSGEEALRCLLKQDFAVILLDVLMPGLDGYETA 85 Query: 66 R--RATELDPDLKVMFITGF 83 R E ++F+T Sbjct: 86 GLIRQREQSKRTPLIFLTAI 105 >gi|13470632|ref|NP_102201.1| nitrogen assimilation regulatory protein ntrC [Mesorhizobium loti MAFF303099] gi|14021374|dbj|BAB47987.1| nitrogen assimilation regulatory protein; NtrC [Mesorhizobium loti MAFF303099] Length = 486 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G+EV +N ++ + V L++TD+VMP+ + ++ Sbjct: 7 ILVADDDAAIRTVLNQALSRVGHEVRVTSNASTLWRWVAAGEGDLVITDVVMPDENAFDM 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + P+L V+ ++ ++ + L KPF L +L+N VNR L+ Sbjct: 67 LPRIKKARPELPVIVMSAQNTFMTAIRASETGAYEYLPKPFDLTELLNIVNRALS 121 >gi|319783401|ref|YP_004142877.1| nitrogen regulation protein NR(I) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169289|gb|ADV12827.1| nitrogen regulation protein NR(I) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 486 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G+EV +N ++ + V L++TD+VMP+ + ++ Sbjct: 7 ILVADDDAAIRTVLNQALSRVGHEVRVTSNASTLWRWVAAGEGDLVITDVVMPDENAFDM 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + P+L V+ ++ ++ + L KPF L +L+N VNR L+ Sbjct: 67 LPRIKKARPELPVIVMSAQNTFMTAIRASETGAYEYLPKPFDLTELLNIVNRALS 121 >gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|313204166|ref|YP_004042823.1| response regulator receiver protein [Paludibacter propionicigenes WB4] gi|312443482|gb|ADQ79838.1| response regulator receiver protein [Paludibacter propionicigenes WB4] Length = 515 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL A+D+ D+ R I L + GYEVV+ NG A + ++E + ++ D MP + G+E Sbjct: 5 RILWADDEMDLLRPYILFLEEKGYEVVTATNGKDAVELCQKETYDIIFLDENMPGLSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+DPD+ ++ IT + + K A L+KP VN LLT+K Sbjct: 65 TLALIKEIDPDVPMVMITKSEEENIMNMAIGSKIADYLTKP------VNPSQILLTLK 116 >gi|301063243|ref|ZP_07203792.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300442671|gb|EFK06887.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 133 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 56/104 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R L +AL G+EV +G + +K+ F L++TDI MP +DG+ Sbjct: 6 KVLVVDDEKGIRYLLSEALLHGGFEVSLARDGQESLEKLENNHFDLVVTDINMPRLDGVS 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 + + + + K++ +TG + D + P+ L KPF + Sbjct: 66 MLKSMRQSGREEKIIIMTGNPSDQRLTDKDLPQVVTRLCKPFDM 109 >gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + +LG+ GYEV C N A + E L L D+ +P+ G E Sbjct: 2 KILVVEDDLSIAMGIEYSLGQEGYEVKVCGNVAEGKAYIENEVVDLCLLDLTLPDGSGYE 61 Query: 64 LARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + A E + D+ V+F+T V + D A ++KPF +R+L++ + +L Sbjct: 62 LCKVAKE-NRDIPVIFLTACDDEVNVVMGLDMGAD---DYVTKPFRIRELISRIKSVLRR 117 Query: 121 KN 122 N Sbjct: 118 HN 119 >gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J] gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J] Length = 228 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 229 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+ + L K GY+V NNG A + + L++ DI+MP+MDGI Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRSLPDLIILDIMMPKMDGI 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E A R P+ K F+ A + A N ++KP R LV+ +N +L Sbjct: 66 E-ACRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAIL 123 >gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 229 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD+ + L + L GYEV++ NGA +K+ L++ D++MP++D Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120 Query: 121 KN 122 K Sbjct: 121 KT 122 >gi|260459489|ref|ZP_05807744.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Mesorhizobium opportunistum WSM2075] gi|259035043|gb|EEW36299.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Mesorhizobium opportunistum WSM2075] Length = 486 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G+EV +N ++ + V L++TD+VMP+ + ++ Sbjct: 7 ILVADDDAAIRTVLNQALSRVGHEVRVTSNASTLWRWVAAGEGDLVITDVVMPDENAFDM 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + P+L V+ ++ ++ + L KPF L +L+N VNR L+ Sbjct: 67 LPRIKKARPELPVIVMSAQNTFMTAIRASETGAYEYLPKPFDLTELLNIVNRALS 121 >gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED++D+ + L + + G+EV + +G + D +R + ++ DI++PEMDG E Sbjct: 2 RLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D+ V+ +T +V L+KPF ++L+ VN L+ Sbjct: 62 VMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALM 116 >gi|146302248|ref|YP_001196839.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156666|gb|ABQ07520.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 230 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 47/80 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LLAEDD D L + L +EV+ NG A D + + F + + D++MP++DG Sbjct: 2 KRLLLAEDDFDFAAILKQYLELHQFEVIWAENGEIALDYFKNQTFDICVFDVMMPKLDGF 61 Query: 63 ELARRATELDPDLKVMFITG 82 LA + ++P++ +F+T Sbjct: 62 SLAEKTITINPEIPFIFLTA 81 >gi|308272245|emb|CBX28851.1| hypothetical protein N47_B19970 [uncultured Desulfobacterium sp.] Length = 151 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL +D+ + F + L + Y V++ + A R ++L+TDIVMP M+G+ Sbjct: 35 LLLVDDEKAILEFCKEFLEQQRYTVLTADAPDVAIQVARNYSGRINMLITDIVMPVMNGL 94 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA + + PD+K +FI+G+ A+ S + + KPF L+D ++ +L Sbjct: 95 ELAETLSCIRPDIKCVFISGYPPEAIF-GSKMHEKMNFIQKPFKLKDFAEKIQYVL 149 >gi|302381354|ref|YP_003817177.1| response regulator receiver modulated diguanylate phosphodiesterase [Brevundimonas subvibrioides ATCC 15264] gi|302191982|gb|ADK99553.1| response regulator receiver modulated diguanylate phosphodiesterase [Brevundimonas subvibrioides ATCC 15264] Length = 1138 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D + R ++AL + G E + N+G A +++R + F L+L D MP +DG + Sbjct: 624 RVLVVDDSEVNREVAVEALSRLGVETFTANDGLQAVERLRLQRFDLVLMDGSMPVLDGFD 683 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 R RA E + I A + ++A K + V+ KPF L DLV E+ R Sbjct: 684 ATRAIRAEEAESGRPRAAIIALTAHVVGSGADAWKASGMDGVIHKPFTLEDLVRELARF 742 >gi|297568395|ref|YP_003689739.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924310|gb|ADH85120.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 785 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 6/116 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVREE--PFSLLLTDIV 55 ++++ILL +D++ +RR + L + G +V +G SAY + REE PF L++ D+ Sbjct: 654 LSRRILLMDDEEMVRRVAARILQQLGCQVQETTDGEAAISAYRQAREEGQPFDLVIMDLT 713 Query: 56 MP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +P M G E + LDP +V+ +G+A + + V+SKP+ L+DL Sbjct: 714 IPGGMGGKEAVKEIRRLDPQARVIVSSGYANDPIMAEPEKYGFDGVISKPYLLKDL 769 >gi|87119596|ref|ZP_01075493.1| DNA-binding response regulator OmpR [Marinomonas sp. MED121] gi|86165072|gb|EAQ66340.1| DNA-binding response regulator OmpR [Marinomonas sp. MED121] Length = 262 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + +L+ +DD D+R L AL + GY + NG + ++ EP SL++ D+ + + D Sbjct: 14 LKKTVLVVDDDADIRTLLSDALQQKGYLALLAENGEQMWQQLEAEPVSLIIMDLYLQDED 73 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G++LAR E+ + +M +TG + L D + KPF +R+++ Sbjct: 74 GLQLAREVREIH-QVPIMMLTGIGDETDRILGLELAADD-------YMMKPFSMREVMAR 125 Query: 114 VNRLL 118 ++ L+ Sbjct: 126 IHALI 130 >gi|86144202|ref|ZP_01062538.1| two-component system, transcriptional regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85829332|gb|EAQ47798.1| two-component system, transcriptional regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 238 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L Y+V NG ++K +++ F L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGTVLKDYLSMNDYDVTHAKNGMEGFEKFKKDDFDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + D+ ++F+T A A+ D K KV L+KPF Sbjct: 65 FTLAKEIREKNEDVPIIFLT---AKAMKED--VLKGYKVGADDYLNKPF 108 >gi|329961484|ref|ZP_08299565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531696|gb|EGF58525.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1361 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 44/64 (68%), Gaps = 1/64 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ D+R++L + LGK+ Y + NG A + ++E+ L+LTD++MP MDG+ Sbjct: 1108 ESILIVEDNADIRQYLSRELGKS-YRTLEAENGEEALNILKEQEIDLILTDVMMPVMDGL 1166 Query: 63 ELAR 66 +L + Sbjct: 1167 KLCK 1170 >gi|308049363|ref|YP_003912929.1| integral membrane sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307631553|gb|ADN75855.1| integral membrane sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 788 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +LL ED D R + + L K G +V NG A ++VR E F +L DI MP MDGI Sbjct: 672 LLLVEDVDINRLVMKRLLKKMGAQVHLACNGQQAVERVRAEGDTFDAILMDIHMPVMDGI 731 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E R+ L+P + ++ +T + L+KPF ++L+ +N++ Sbjct: 732 EATRQIRALNPSMPIIALTANITREMRATCQQAGFHDFLTKPFKEQELLEVLNQI 786 >gi|282878977|ref|ZP_06287741.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] gi|281298976|gb|EFA91381.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] Length = 517 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 13/128 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L +D+ ++ R I L K GY+VV+ +NG+ A D+ R+ F L+L D +MP + G Sbjct: 3 NGLLLWVDDEIELLRAHIIFLEKKGYQVVTVSNGSDAIDQCRQHTFDLVLLDEMMPGLTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP-------------FHLR 108 +E +R E+ P V+ +T + + K A L KP H + Sbjct: 63 LETLQRIKEISPATPVVMVTKSEEENIMDQAIGSKIADYLIKPVNPNQILLALKKNIHRK 122 Query: 109 DLVNEVNR 116 ++V EV + Sbjct: 123 EIVTEVTQ 130 >gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] Length = 232 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D + KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIVKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|269967865|ref|ZP_06181908.1| sensor histidine kinase/response regulator LuxN [Vibrio alginolyticus 40B] gi|269827515|gb|EEZ81806.1| sensor histidine kinase/response regulator LuxN [Vibrio alginolyticus 40B] Length = 681 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +R+F L K G+EV+ +G A D + +E L+L DI MP MDG+ Sbjct: 563 RTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQEDVDLILMDIEMPIMDGV 622 Query: 63 ELARRATELDPD 74 E +RR D + Sbjct: 623 EASRRIRSSDKN 634 >gi|261408865|ref|YP_003245106.1| two component AraC family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285328|gb|ACX67299.1| two component transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10] Length = 524 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 7/119 (5%) Query: 4 KILLAEDD----DDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+LLA+D+ + M+ F+ G +V+ S NNG +A + + E +L+TD+ MP Sbjct: 3 KVLLADDEILDLEGMKSFI--PWEDLGMKVIDSVNNGFAACEVLESEKVDILVTDVRMPN 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G+ELA+RA +L +L+++F++G+ + A + KP ++L++ + ++ Sbjct: 61 MTGLELAQRALKLQEELRIIFVSGYQDFGYVKQAIALNACSYVLKPMEDQELIDALTKV 119 >gi|188576032|ref|YP_001912961.1| chemotaxis response regulator [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520484|gb|ACD58429.1| chemotaxis response regulator [Xanthomonas oryzae pv. oryzae PXO99A] Length = 116 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ +D MR+ + AL AG+ V +GA A + + + F+ ++TD+ MP MDGI L Sbjct: 1 MVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMDGISLI 60 Query: 66 RRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L PD K ++ +T +A + A L KPF+ L+ V ++L Sbjct: 61 RELRQL-PDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKVL 115 >gi|220915717|ref|YP_002491021.1| response regulator receiver modulated GAF sensor protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953571|gb|ACL63955.1| response regulator receiver modulated GAF sensor protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 622 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 59/111 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL+ +D+ + L AG+ V + ++ A + + E LLLTD+VMP +DG Sbjct: 3 NGRILVVDDERFFQELFRDVLTGAGHAVRTSSSAEEALEVLAAERVDLLLTDMVMPGLDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 + L R A DP+L+V+ +TG V L +S + L+KP +L+ Sbjct: 63 LGLIREARRRDPELEVVAVTGREDVKLAVESMKAGCSDFLTKPLEPGELLR 113 >gi|218779018|ref|YP_002430336.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760402|gb|ACL02868.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 662 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +KILL +D+D + L +ALG+ GY + + + A+A + P F L + D+ MPEM Sbjct: 539 EKILLVDDEDSITMLLERALGRLGYRIDAYTSSAAALESFTANPDGFDLAILDVSMPEMT 598 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L ++ E+ PD + TG + ++L+KP + + + ++L Sbjct: 599 GDVLLKKIKEIRPDFPCILFTGNDHSMSKARALELGACQLLAKPLRTQAMTAAIRQVL 656 >gi|218531393|ref|YP_002422209.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523696|gb|ACK84281.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 533 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + IL+ +D D+ L GY + +G A + + + P LL +D++MP M Sbjct: 409 TETILIVDDRADVAELARAILRDYGYGTLMARHGREALEILNDHPEIDLLFSDLIMPGGM 468 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 DG+ LAR A PDLK++ TG+A +L +L+KP+ +LV V Sbjct: 469 DGLTLAREARRRHPDLKILLTTGYAEASLERTGIERPEFDILNKPYRRAELVRRV 523 >gi|91225491|ref|ZP_01260613.1| sensor histidine kinase/response regulator LuxN [Vibrio alginolyticus 12G01] gi|91189854|gb|EAS76127.1| sensor histidine kinase/response regulator LuxN [Vibrio alginolyticus 12G01] Length = 681 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +R+F L K G+EV+ +G A D + +E L+L DI MP MDG+ Sbjct: 563 RTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQEDVDLILMDIEMPIMDGV 622 Query: 63 ELARRATELDPD 74 E +RR D + Sbjct: 623 EASRRIRSSDKN 634 >gi|332703306|ref|ZP_08423394.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str. Walvis Bay] gi|332553455|gb|EGJ50499.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str. Walvis Bay] Length = 671 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 1/114 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D+ + LGK G+EV++ NG A + + L++TD+ M +MDG+ Sbjct: 120 RRVLVVDDERIALDNMAYVLGKDGHEVLTAENGRQAMEVLARTECDLVITDLKMNQMDGL 179 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 EL R P +++ +TGFA V ++ A L KP +L D++ V+R Sbjct: 180 ELLERLKAASPQTELILVTGFATVDTAVNALKKGAAHYLPKPLNL-DVLRSVSR 232 >gi|225405844|ref|ZP_03761033.1| hypothetical protein CLOSTASPAR_05065 [Clostridium asparagiforme DSM 15981] gi|225042626|gb|EEG52872.1| hypothetical protein CLOSTASPAR_05065 [Clostridium asparagiforme DSM 15981] Length = 216 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AEDD DM++ L L + GY+V + +GA+A D + E L++ D +MP +G++ Sbjct: 2 KVLIAEDDPDMQKILGLYLRREGYQVDAVGDGAAAVDFLAERQVDLVVLDWMMPVQNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 R L+ +K++ +T A N D A + L KPF ++ L+ V +L Sbjct: 62 TCREIRRLNIPVKILMLT---AKGQNEDEIAGLSCGADDYLRKPFDMQVLLLRVKKL 115 >gi|170761841|ref|YP_001786289.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408830|gb|ACA57241.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 223 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDVLYKEYIDLIISDIMMPNMDGYT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + ++ ++ IT + + + KP + +++ V LL Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALL 117 >gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 246 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV + +GA+A RE ++ D+++P++DG E Sbjct: 21 RVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDVDGFE 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P++ V+F+T AV ++KPF L +LV + LL Sbjct: 81 VLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLL 135 >gi|288958609|ref|YP_003448950.1| two-component response regulator [Azospirillum sp. B510] gi|288910917|dbj|BAI72406.1| two-component response regulator [Azospirillum sp. B510] Length = 133 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED +R + L G++V NG +A + F L++TD++MPE+D Sbjct: 6 MPSNILVVEDSPAVRLSVAGYLEGRGFDVTEAENGRAAIRALDRRSFDLIVTDVLMPEVD 65 Query: 61 GIELARRATELDPDLKVMFITGFA----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE+ + A PD+K++ ++G A A L + +++ KPF +L V R Sbjct: 66 GIEVIKVARSAQPDVKILAMSGGAPNMPAGYLLKMTRMFNADEIIYKPFLNEELGAAVAR 125 Query: 117 LL 118 LL Sbjct: 126 LL 127 >gi|258645697|ref|ZP_05733166.1| transcriptional regulatory protein CutR [Dialister invisus DSM 15470] gi|260403067|gb|EEW96614.1| transcriptional regulatory protein CutR [Dialister invisus DSM 15470] Length = 224 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ M L L GYEV + +G +A +K RE +S ++ DI+MP++DGIE Sbjct: 2 KILIAEDEKAMSDALAAVLKHFGYEVDAVYDGLAATEKARENSYSCMIFDIMMPKIDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +R + V+ +T + V + D+ A L+KPF + +L+ + + Sbjct: 62 ALKRIRDSGDMTPVIMLTAKSEVEDRIMGLDAGAD---DYLAKPFAMGELLARIRSM 115 >gi|237799232|ref|ZP_04587693.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022087|gb|EGI02144.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 470 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +LL EDD +R L + L A Y + + A V +PF+L+++D+ MP MD Sbjct: 1 MSINVLLVEDDRALREALGETLELASYGYKAVGSAEEALLAVEAQPFNLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV D+ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVAR 116 >gi|226226746|ref|YP_002760852.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226089937|dbj|BAH38382.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 862 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMD 60 + ILLAED++ +R + L GY V+ +NG A A E LL++D+ MP M Sbjct: 741 ETILLAEDEEGVRHIAARLLRSFGYTVLEASNGEQALAIADAYTEHIDLLVSDVTMPRMG 800 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA+ T P L+V+ ++G + N L KPF L +V +L Sbjct: 801 GGVLAQELTTRRPTLRVLHLSGHVDPVVIESGLFTGNTAFLQKPFSAESLSRKVREVL 858 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMP- 57 M+ IL ED L L AG+EV +NG +A + + F ++++DIVMP Sbjct: 1 MSHHILAVEDSPTQAEILRHLLESAGHEVAVASNGTAALELLASTRRRFDVVVSDIVMPG 60 Query: 58 EMDGIELARR 67 +DG EL RR Sbjct: 61 AVDGYELCRR 70 >gi|226225605|ref|YP_002759711.1| two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226088796|dbj|BAH37241.1| two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 353 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 59/114 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R L + L GYEV +G A + ++ FSL+L D+ MP + G+ Sbjct: 6 RRILVVDDESTIRLALSRFLRTRGYEVEMAESGTVALSILAQQRFSLMLCDLRMPGVSGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ +A DP L ++ +T D+ + L+KP L DL+ V R Sbjct: 66 EVVPQALTHDPHLGIIMLTAVNDAQSATDALSNGAFDYLTKPVELPDLLAAVER 119 >gi|224536093|ref|ZP_03676632.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM 14838] gi|224522312|gb|EEF91417.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM 14838] Length = 1346 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 11/124 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+DMR++++ L K Y V G SA RE+ L+++DI+MP MDG+E Sbjct: 1097 RILVVEDDEDMRQYIVSKLSKT-YNVQEAPEGKSAIHIAREQMPDLIISDIMMPVMDGLE 1155 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-----KPFHLRDLVNEVNRLL 118 L R + D+ + I A + + + + L+ KPF+ + L+ ++ L Sbjct: 1156 LCR---AIKNDMALAHIPVVLLTAKSLEEHVKDGYQALADDYILKPFNAQILLAKIESL- 1211 Query: 119 TIKN 122 IKN Sbjct: 1212 -IKN 1214 >gi|212639553|ref|YP_002316073.1| chemotaxis response regulator cheY [Anoxybacillus flavithermus WK1] gi|212561033|gb|ACJ34088.1| Chemotaxis response regulator CheY [Anoxybacillus flavithermus WK1] Length = 119 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MR + L K G+EVV+ +GA A +K +E L+ DI MPEMDGI Sbjct: 3 RILIVDDAAFMRMMIKDILTKNGHEVVAEAADGAQAVEKYKEFRPDLVTMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++D + KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 63 TALKEIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTL 118 >gi|254446399|ref|ZP_05059875.1| hypothetical protein VDG1235_4649 [Verrucomicrobiae bacterium DG1235] gi|198260707|gb|EDY85015.1| hypothetical protein VDG1235_4649 [Verrucomicrobiae bacterium DG1235] Length = 131 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 7/128 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KI+L EDD R + LG GYEV G A + +E L++ D+++P+M G Sbjct: 4 SKKIILLEDDKASARLVSTFLGTKGYEVRESYEGRFAIEMALKEKPDLMIVDVLLPDMHG 63 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLRDLVNEV 114 E + RAT DLKV+F+T + + A K LSKPF L V Sbjct: 64 SEAVKQLRATNSMHDLKVIFLTSLLSKSNTTGKETRLTVAGKEYPALSKPFKPAVLAEIV 123 Query: 115 NRLLTIKN 122 +R+L+ N Sbjct: 124 DRILSGDN 131 >gi|197121023|ref|YP_002132974.1| response regulator receiver modulated GAF sensor protein [Anaeromyxobacter sp. K] gi|196170872|gb|ACG71845.1| response regulator receiver modulated GAF sensor protein [Anaeromyxobacter sp. K] Length = 622 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 59/111 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL+ +D+ + L AG+ V + ++ A + + E LLLTD+VMP +DG Sbjct: 3 NGRILVVDDERFFQELFRDVLTGAGHAVRTSSSAEEALEVLAAERVDLLLTDMVMPGLDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 + L R A DP+L+V+ +TG V L +S + L+KP +L+ Sbjct: 63 LGLIREARRRDPELEVVAVTGREDVKLAVESMKAGCSDFLTKPLEPGELLR 113 >gi|116621238|ref|YP_823394.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224400|gb|ABJ83109.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1283 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +L+ ED+D +R +++ L K G+ V+ +GA A D +R ++L D+ +P Sbjct: 1166 VLVVEDEDPLRCAVVRMLRKTGFTVLEAADGAVAIDLLRANGNRIDMILLDMTIPGASSH 1225 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ A + P ++V+ + ++ L P +A + + KP+ L DLV + + Sbjct: 1226 EVVAAAAQARPSIRVILTSAYSQEMLTPPMSASQIHGFIRKPYQLGDLVQTLRK 1279 >gi|307131849|ref|YP_003883865.1| transcriptional regulatory protein tctD [Dickeya dadantii 3937] gi|306529378|gb|ADM99308.1| Transcriptional regulatory protein tctD [Dickeya dadantii 3937] Length = 224 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KAL +AG+ V +G +A + +E ++L++ D+ +P MDG+ Sbjct: 2 RLLLVEDHPELAHWLEKALSEAGFAVDRVGDGVAADQLLLQESYALVVLDVSLPRMDGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + +L V+ +T A+VA L+KPF L +L + LL Sbjct: 62 LLARLRKRGQNLPVLLLTARASVADRVRGLNLGADDYLTKPFELAELEARLRALL 116 >gi|198274194|ref|ZP_03206726.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135] gi|198272869|gb|EDY97138.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135] Length = 1312 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ D+R + +++ + YEV++ NG +D + + +++++DI+MP MDGIEL Sbjct: 1057 ILVVEDNRDIREY-VRSSFEEMYEVLTAANGKEGWDIAQSQIPNIIISDIMMPVMDGIEL 1115 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E + V+ +T + + A ++KPF R L + +N +L Sbjct: 1116 CRHIKEDMRTSHIPVILLTAKDTLQDKEEGYAAGADSFITKPFSARLLNSRINNIL 1171 >gi|89070748|ref|ZP_01158006.1| Signal transduction histidine kinase [Oceanicola granulosus HTCC2516] gi|89043647|gb|EAR49853.1| Signal transduction histidine kinase [Oceanicola granulosus HTCC2516] Length = 789 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%) Query: 6 LLAEDDDDMRRF-LIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 ++A DDD + + L G+EV+ C++G A + E + LL+TD MP M G+E Sbjct: 678 IVAVDDDVLVSMGTVGLLEDLGHEVIECHSGKEALAALAERDDVDLLITDHAMPRMTGVE 737 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEV 114 LAR L PDL ++ TG+A + P A L KPF L DL+ E+ Sbjct: 738 LAREVRALRPDLPIILATGYADM---PAGGADYITARLEKPFSDSALADLLAEL 788 >gi|86146138|ref|ZP_01064464.1| FlaM [Vibrio sp. MED222] gi|218708821|ref|YP_002416442.1| FlaM [Vibrio splendidus LGP32] gi|85836085|gb|EAQ54217.1| FlaM [Vibrio sp. MED222] gi|218321840|emb|CAV17813.1| FlaM [Vibrio splendidus LGP32] Length = 469 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRNIKQHWPNLPVLLMTAYANIEDAVAAMKEGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|254486449|ref|ZP_05099654.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. GAI101] gi|214043318|gb|EEB83956.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. GAI101] Length = 738 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ ED+ D+R+ L + G V S +G SA + + P L+L+D V+P MDG Sbjct: 622 VLIVEDNTDLRKTYGAMLDRMGCRVHSAADGPSAVEIAQTLPHVDLILSDEVLPGGMDGN 681 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ARR E P V+F++GF ++ + + +L KPF DL Sbjct: 682 QVARRLAEFYPKAAVIFMSGFTENSIIHNGRLDEGVTLLQKPFTANDL 729 >gi|110598173|ref|ZP_01386450.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110340187|gb|EAT58685.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 1014 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL +D+ + + + K G+ V + N+ A + R +P F LL+TD+ MPEM G Sbjct: 890 ILLVDDEQAALKVMSLMITKLGFNVDARNSPLQALEVFRRQPEQFDLLITDLTMPEMTGF 949 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELA + DP L ++ I+G+ + + N + L+KP + + + ++ +L + Sbjct: 950 ELAEEIHKTDPKLPIIMISGYGKNVHDLSTINRVGITRTLNKPVQMVQIASAIHEVLPV 1008 >gi|82546346|ref|YP_410293.1| response regulator of hydrogenase 3 activity [Shigella boydii Sb227] gi|81247757|gb|ABB68465.1| response regulator of hydrogenase 3 activity [Shigella boydii Sb227] gi|332092316|gb|EGI97391.1| transcriptional regulatory protein zraR [Shigella boydii 3594-74] Length = 408 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I + L+P + V+ +T +++V ++ L KP +L + + L Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 >gi|115523803|ref|YP_780714.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517750|gb|ABJ05734.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 931 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ EDD +R F++ L GY + +GA+A +V F LL TD++MP M+ Sbjct: 789 ETILVVEDDAMVRNFVVAQLRSLGYRTYTAASGAAALTEVDSGASFDLLFTDVIMPGGMN 848 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +LA + P +KV++ +G+ A+ +L KP+ +L V LT Sbjct: 849 GRQLADAVLQRRPGIKVLYTSGYTENAIVHHGRLDAGVFLLPKPYRKSELARMVRAALT 907 >gi|330997764|ref|ZP_08321599.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569652|gb|EGG51417.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1320 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+DD+R ++ + + GY VV+ NG + + + ++++DI+MPEMDGI L Sbjct: 1070 VLVVEDNDDIRDYVASSFDE-GYRVVTAMNGREGWREAQRLVPDIIVSDIMMPEMDGIGL 1128 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR E + V+ +T ++ + L+KPF L + V LL ++ Sbjct: 1129 CRRVKEDVRTSHIPVILLTAKDSIRDKEEGYDSGADSYLTKPFSATLLNSRVRNLLDMR 1187 >gi|170750821|ref|YP_001757081.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170657343|gb|ACB26398.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 858 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +GAS ++ + +L+TD+ +P M+ Sbjct: 737 ETVLVVDDEPTVRMLVTEVLEDLGYAAIEAADGASGLKVLQSDVRIDMLITDVGLPGGMN 796 Query: 61 GIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A + PDLKV+FITG+A ALN P +V++KPF L L + ++ Sbjct: 797 GRQMADAGRQHRPDLKVLFITGYAENAALNHGHLGP-GMQVMTKPFALEALATRIRGII 854 >gi|163786994|ref|ZP_02181441.1| two-component system, transcriptional regulatory protein [Flavobacteriales bacterium ALC-1] gi|159876882|gb|EDP70939.1| two-component system, transcriptional regulatory protein [Flavobacteriales bacterium ALC-1] Length = 228 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 10/121 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILLAEDD D L + L +GY + +G A + + +++ + D++MP+MDG Sbjct: 2 KHILLAEDDLDFGNILKQYLEISGYTITWAKDGKEALELFKNGAYNICVFDVMMPKMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 LA + +L+P++ +F+T A L D K K+ + KPF +LV +N + Sbjct: 62 TLAEKVVDLNPEIPFIFLT---ARKLKEDK--IKGLKLGADDYIVKPFEADELVLRLNNI 116 Query: 118 L 118 L Sbjct: 117 L 117 >gi|330505520|ref|YP_004382389.1| two component, sigma54 specific, fis family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328919806|gb|AEB60637.1| two component, sigma54 specific, fis family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 461 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 63/118 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R+ L + L AG +V+S + ++ ++++DI MP +DG++ Sbjct: 12 QVLLIDDDAHLRQALSQTLDLAGLKVLSLGDAQGLAARIPVGWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ E D +L V+ ITG V L + L KPF DL++ V R L ++ Sbjct: 72 LLQQLRERDAELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFANDDLLDSVRRALELR 129 >gi|170744258|ref|YP_001772913.1| response regulator receiver protein [Methylobacterium sp. 4-46] gi|168198532|gb|ACA20479.1| response regulator receiver protein [Methylobacterium sp. 4-46] Length = 177 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPE- 58 Q +L+ EDD +R + L +V +C +G A A K R +++ TD+ +P Sbjct: 53 TQLVLVVEDDPAVRDLAVALLRDTVLDVAACGSGEEAVALLKQRGTEVAMVFTDVRLPGG 112 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MDGI LAR ++L P ++V+ +GFA + + P+ A + KP+ D++ +V+ Sbjct: 113 MDGIALARAVSQLWPGVRVVVTSGFADARI---AGLPQGAVYMPKPWRALDVLAQVD 166 >gi|90409757|ref|ZP_01217774.1| hypothetical C4-dicarboxylate transport transcriptional regulatory protein [Photobacterium profundum 3TCK] gi|90329110|gb|EAS45367.1| hypothetical C4-dicarboxylate transport transcriptional regulatory protein [Photobacterium profundum 3TCK] Length = 450 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ ++ +D+ +R L + L Y+V ++ A D + + ++++DI MP +D Sbjct: 1 MNKHVIFIDDEKSIRNALGQTLELEDYDVSLFSSAKPALDIIDNQYTGVIISDINMPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ +RA +DP+L ++ +TG + + D+ L KPF L++ V R Sbjct: 61 GLTFLKRALAIDPELSIILLTGHGDITMAVDAMRIGAYDFLEKPFSTETLLDVVKR 116 >gi|84388109|ref|ZP_00991005.1| FlaM [Vibrio splendidus 12B01] gi|84377176|gb|EAP94046.1| FlaM [Vibrio splendidus 12B01] Length = 469 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRNIKQHWPNLPVLLMTAYANIEDAVAAMKEGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 842 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED++ R ++ L G+EV + +G A + + +E F L+L D+ MP+M G E Sbjct: 718 RILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALEILSKERFDLVLMDVQMPQMHGDE 777 Query: 64 LAR--RATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R RA E DP + ++ +T +A A LSKP +++L + R+ Sbjct: 778 VTRRIRAGEAGDPHVPIVALTAYALKGDRERFLAAGMDDYLSKPIDMQELERVLKRI 834 >gi|332534883|ref|ZP_08410705.1| putative sensory histidine kinase YfhA [Pseudoalteromonas haloplanktis ANT/505] gi|332035682|gb|EGI72171.1| putative sensory histidine kinase YfhA [Pseudoalteromonas haloplanktis ANT/505] Length = 449 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +DD + + L + GYEV +C +G +A ++ + F ++TD+ M EMDG+ Sbjct: 10 KVLLVDDDASLLKLLAIRIESKGYEVTTCESGLTALQILKSQVFDAVITDLRMDEMDGMA 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS 92 L R+ P L V+ +T ++ PD+ Sbjct: 70 LHRQLQSRYPALPVIMMTAHGSI---PDA 95 >gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 234 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|298505432|gb|ADI84155.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 461 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +RR L L + GY+V++ +G E +L++TD+ MP M G Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPALVVTDLKMPGMGGFR 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 L + PD V+ IT F AV D+ ++KPF+ Sbjct: 70 LLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFN 112 >gi|224025952|ref|ZP_03644318.1| hypothetical protein BACCOPRO_02699 [Bacteroides coprophilus DSM 18228] gi|224019188|gb|EEF77186.1| hypothetical protein BACCOPRO_02699 [Bacteroides coprophilus DSM 18228] Length = 449 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q IL+ EDD L LGK GYEV + + A A + FSL+L+D+ +P+ D Sbjct: 1 MTQSILIVEDDLTFATMLKTWLGKKGYEVETASTNARARKLLTTRDFSLILSDLRLPDQD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI L +L V+ +T +A + + A +SKP +L+ ++ ++ Sbjct: 61 GIHLLSWLRDLQKATPVIIMTSYAEIQGAVLAMKEGAADYVSKPVQPDELLKKIKEAIS 119 >gi|149920915|ref|ZP_01909376.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149818187|gb|EDM77642.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 289 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 19/127 (14%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPE 58 ++LL +DD +R + AL + GY V NGA A D + F LL+ D+ MPE Sbjct: 35 RLLLVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVSMPE 94 Query: 59 MDGIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLV 111 +DG +L RR D D V+F++ + + L D ++KPF R+L Sbjct: 95 IDGFDLVRRLRLRDADTPVLFLSARSDEIDRILGLELGGDD-------YVTKPFSTRELA 147 Query: 112 NEVNRLL 118 V LL Sbjct: 148 TRVKVLL 154 >gi|126665017|ref|ZP_01736000.1| sigma 54-dependent transcriptional activator containing CheY-like receiver domain [Marinobacter sp. ELB17] gi|126630387|gb|EBA01002.1| sigma 54-dependent transcriptional activator containing CheY-like receiver domain [Marinobacter sp. ELB17] Length = 496 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+R L+ L A + V +G A ++ + P ++++D+ MP + G E Sbjct: 5 RILIVEDDRDLREALVTTLELAKFRVHEAADGHEALRQLSQVPVDMVVSDVNMPGLSGHE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L L P L +M +T + ++ + L KPF LV+ V+++ Sbjct: 65 LLVEVQRLYPGLPMMLMTAYGQISHAVSAMQAGAIDYLVKPFEGHTLVDAVSKI 118 >gi|83646363|ref|YP_434798.1| CheY-like receiver protein [Hahella chejuensis KCTC 2396] gi|83634406|gb|ABC30373.1| FOG: CheY-like receiver [Hahella chejuensis KCTC 2396] Length = 243 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +LL +D+ + + L + L + GY S ++G +A +++ F +++TD MP M+ Sbjct: 1 MNGAVLLVDDEPGVTQSLTRLLHRRGYRTHSAHDGVAALRLMQQHDFDVVITDFNMPYMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E ++ P ++ + ++G + ++ D+ N+ + ++KP+ DLV V + L Sbjct: 61 GVEFLQKVGHKYPRIERVLMSGLSEFSMLRDAVNSARVNTFITKPWDDEDLVRVVTQSL 119 >gi|310822108|ref|YP_003954466.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309395180|gb|ADO72639.1| Sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 448 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 55/110 (50%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 +D +M R L + L GYEV GA A VR PF +L+D+ M E+DG ++ Sbjct: 2 DDHLEMGRMLQEPLSDEGYEVELATRGAEAIRLVRSRPFDAVLSDLRMEEVDGFDVLAAV 61 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DP++ V+ +T F V ++ +KPF L +++ + R L Sbjct: 62 QAVDPEVPVLLMTAFGGVENAVEAMKRGAWHYFTKPFRLDEVLIYLRRAL 111 >gi|89054729|ref|YP_510180.1| two component, sigma54 specific, Fis family transcriptional regulator [Jannaschia sp. CCS1] gi|88864278|gb|ABD55155.1| two component, sigma54 specific, transcriptional regulator, Fis family [Jannaschia sp. CCS1] Length = 459 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 63/122 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G++ + TE P L V+ I+ + + L KPF L DL+ R L + Sbjct: 61 GLDTLPQITEARPGLPVIIISAQNTIMTAIQATEKDAYDYLPKPFDLPDLMKRAARALDL 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|260062158|ref|YP_003195238.1| C4-dicarboxylate transport transcriptional regulatory protein [Robiginitalea biformata HTCC2501] gi|88783720|gb|EAR14891.1| C4-dicarboxylate transport transcriptional regulatory protein [Robiginitalea biformata HTCC2501] Length = 389 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 9/118 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ ED+ +RR L+K L + Y+V NGA +K++++ + L+L DI MP+MDG Sbjct: 5 RILVIEDEAAIRRVLVKILTEENDAYQVEEAENGAEGLEKLKKQEYDLVLCDIKMPKMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ + P+ + I+G + + +SKP L NRLLT Sbjct: 65 VEVLEAGRKSKPETPFIMISGHGDLDTAVQTMRMGAFDYISKPPDL-------NRLLT 115 >gi|320352745|ref|YP_004194084.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121247|gb|ADW16793.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1246 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + +LL ED+ + L GY V++ + A RE LL+TD++MPEM+ Sbjct: 1125 ETLLLVEDEPMNLDMTMSMLEHLGYTVLAAATPSEAIRLAREHEGAIRLLITDVIMPEMN 1184 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA+ L P LK++F++G+ A + + L KPF + L +V L Sbjct: 1185 GRDLAKTLGALHPRLKMLFMSGYTANVIAHHGVLDQGMHFLQKPFTMAALAAKVREAL 1242 >gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 224 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD + + + L GY VV +G SA + E + L+L DI++P+ DG++ Sbjct: 2 KVLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLPKFDGMK 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R E+ D+ V+ IT + V + + ++KPF ++++ +N +L Sbjct: 62 VLSRIREV-KDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVL 115 >gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 699 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+D + +K L G+EV + NG ++ E F L+L D+ MP+MDG+E Sbjct: 574 RILLAEDNDINQILAVKLLTLQGHEVATAENGREVLARLAESDFDLILMDVRMPDMDGVE 633 Query: 64 LARRATE-----LDPDLKVMFITGFA 84 RR + DPD+ ++ +T A Sbjct: 634 AMRRIRDGEVPGADPDIPIVAVTAHA 659 >gi|197119238|ref|YP_002139665.1| PAS/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088598|gb|ACH39869.1| sensor histidine kinase response regulator, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 853 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +LL EDD +RR + L + GY V+ A R+E L +LTD+VMP M+G Sbjct: 736 VLLVEDDPLVRRTTLNTLKEIGYHVIEAAGADEAIALCRKEDAELDVILTDVVMPGMNGK 795 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ P LKV+F++G+ + + KPF ++ L ++ + Sbjct: 796 EMVDAIESFRPGLKVLFMSGYTKDLVAQRGVVEGGRHFIQKPFDIQSLARKLRETM 851 >gi|188579375|ref|YP_001922820.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342873|gb|ACB78285.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 742 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +L+ ED+ D+ F + L G+ VV ++ A ++ + PF + +D+VMP M G+ Sbjct: 604 VLVVEDNLDVGSFCTQILEDLGHSVVWAHDAEEALAEMEKVPFRFDAVFSDVVMPGMGGV 663 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNA 94 ELARR PDL V+ TG++ V D++ Sbjct: 664 ELARRLRASHPDLPVILTTGYSDVLARDDAHG 695 >gi|218531287|ref|YP_002422103.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523590|gb|ACK84175.1| histidine kinase [Methylobacterium chloromethanicum CM4] Length = 632 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 9/116 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ F ++ L GY V NN A ++ + F ++ +D+VMP M+G+ Sbjct: 509 VLVVEDNAEVGTFAVQTLTDLGYVPVLANNAEEALAELARDADRFDVVFSDVVMPGMNGL 568 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LARR E DL V+ +G++ V N ++L KP+ V +++RLL Sbjct: 569 DLARRIREEHHDLPVLLASGYSHVMAQ---NGTYGFELLHKPYS----VEQLSRLL 617 >gi|170722859|ref|YP_001750547.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida W619] gi|169760862|gb|ACA74178.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida W619] Length = 458 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 57/113 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R+ L L G+ + + A + V+ + +SL+++D+ MP MDG + Sbjct: 4 KVLLVEDDRALRQALGDTLEIGGFAYRAVGSAEEALEAVQRDAYSLVISDVNMPGMDGHQ 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L P L V+ +T AAV ++ L KPF + L++ V R Sbjct: 64 LLAHLRRQHPQLPVLLMTAHAAVERAVEAMRQGAVDYLVKPFEPKALLSLVER 116 >gi|77464144|ref|YP_353648.1| response regulator receiver protein [Rhodobacter sphaeroides 2.4.1] gi|126462987|ref|YP_001044101.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|332559020|ref|ZP_08413342.1| response regulator receiver protein [Rhodobacter sphaeroides WS8N] gi|77388562|gb|ABA79747.1| response regulator receiver protein [Rhodobacter sphaeroides 2.4.1] gi|126104651|gb|ABN77329.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|332276732|gb|EGJ22047.1| response regulator receiver protein [Rhodobacter sphaeroides WS8N] Length = 129 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ ED+D++ L + + GYE +GA A ++R L+L D+++PE+ G Sbjct: 7 KRRILVVEDEDNIAIALDYLITREGYEHDRVASGAEALGRIRSTHPDLVLLDVMLPEVSG 66 Query: 62 IELARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + LDP L K++ +T + A +SKPF L+ L EV RLL Sbjct: 67 YEIC-QGVRLDPTLAHVKILMMTARGSAIERKKGLALGADGFISKPFELKALREEVRRLL 125 >gi|327470096|gb|EGF15560.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 237 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ +G + R++ L++TDI+MP MD Sbjct: 6 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLELFRKKSVDLIITDIMMPNMD 65 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 66 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 118 Query: 114 VNRLL 118 VN +L Sbjct: 119 VNNIL 123 >gi|327462258|gb|EGF08585.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|332360674|gb|EGJ38483.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 237 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ +G + R++ L++TDI+MP MD Sbjct: 6 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLELFRKKSVDLIITDIMMPNMD 65 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 66 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 118 Query: 114 VNRLL 118 VN +L Sbjct: 119 VNNIL 123 >gi|328543925|ref|YP_004304034.1| Response regulator containing chemotaxis protein CheY, AAA-t ype ATPase, and DNA-binding domains [polymorphum gilvum SL003B-26A1] gi|326413669|gb|ADZ70732.1| Response regulator containing CheY-like receiver, AAA-t ype ATPase, and DNA-binding domains [Polymorphum gilvum SL003B-26A1] Length = 479 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 62/114 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY V +N A+ + V L++TD+VMP+ + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYTVRLTSNAATLWRWVSSGDGDLVVTDVVMPDENIFDV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L PDL V+ ++ ++ + L KPF L++L ++R L Sbjct: 66 LPRIKKLRPDLPVIVMSAQNTFMTAIRASEKGAYEYLPKPFDLKELTGIISRAL 119 >gi|293605554|ref|ZP_06687935.1| two component hyrid sensor and regulator [Achromobacter piechaudii ATCC 43553] gi|292816079|gb|EFF75179.1| two component hyrid sensor and regulator [Achromobacter piechaudii ATCC 43553] Length = 1001 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +++ EDD ++R + + L + G +V++ +G + + V LL+TD+ +P ++G + Sbjct: 874 VVVVEDDANVRDMVRECLAELGMQVLTAADGEAGLELVLHTNDIDLLVTDVGLPALNGRQ 933 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA A P LKV+ +TG+A A +++ KPF L L V R+L Sbjct: 934 LADAARAAHPGLKVLLMTGYAESAARGGGFLEHGIELIVKPFSLEVLGERVQRML 988 >gi|289626553|ref|ZP_06459507.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 400 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 221 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R+F+ L GYEV + G A D++ +E ++L D+++PEM+ Sbjct: 1 MKAKVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMN 60 Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G + R E +L V+ +T + + KPFH+ +L+ + +L Sbjct: 61 GFTVLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLR 120 Query: 120 IKN 122 K Sbjct: 121 RKG 123 >gi|148976411|ref|ZP_01813117.1| FlaM [Vibrionales bacterium SWAT-3] gi|145964234|gb|EDK29490.1| FlaM [Vibrionales bacterium SWAT-3] Length = 469 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKSNSVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P+L V+ +T +A + + ++KPF L+N V+R +K Sbjct: 63 LALLRNIKQHWPNLPVLLMTAYANIEDAVAAMKEGAIDYMAKPFAPEVLLNMVSRYAPVK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|90411021|ref|ZP_01219035.1| putative response regulator [Photobacterium profundum 3TCK] gi|90328234|gb|EAS44545.1| putative response regulator [Photobacterium profundum 3TCK] Length = 466 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ ++L+ EDD +R L+ L AGY+ + ++ A ++ EP ++++D+ M M Sbjct: 1 MNQSRVLVVEDDKGLREALVDTLALAGYQWLEADSAEKALLILKSEPVDIVVSDVQMAGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DG+ L R + P V+ +T +A + + ++KPF L+N V+R Sbjct: 61 DGLGLLRNIKQNWPKTPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSR 117 >gi|305664862|ref|YP_003861149.1| C4-dicarboxylate transport transcriptional regulatory protein [Maribacter sp. HTCC2170] gi|88707984|gb|EAR00223.1| C4-dicarboxylate transport transcriptional regulatory protein [Maribacter sp. HTCC2170] Length = 387 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 9/119 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ ED+ +RR L+K L + Y+V +G + ++ + L+L DI MP+MD Sbjct: 2 SKILVVEDESAIRRVLVKILSEESDSYQVEEAEDGLRGIEAIKNNDYDLVLCDIKMPKMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E+ A+++ P++ + I+G + ++ +SKP L NRLLT Sbjct: 62 GVEVLEAASKIKPEIPFIMISGHGDLDTAVNTMRLGAFDYISKPPDL-------NRLLT 113 >gi|325479624|gb|EGC82716.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus prevotii ACS-065-V-Col13] Length = 219 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L EDD +R + AL + GYEV ++G++ DKVR+E LL+ DI++PE DG+ + Sbjct: 2 IYLVEDDKSIRNLVEYALREKGYEVCGFSDGSNIVDKVRDENVDLLILDIMLPEKDGLSI 61 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + E +L V+ +T + L D ++KPF + +L++ V + Sbjct: 62 LKEIREF-SNLPVIMLTARTDEFDKVTGLDLGADD-------YITKPFSILELISRVKAV 113 Query: 118 L 118 L Sbjct: 114 L 114 >gi|238920098|ref|YP_002933613.1| acetoacetate metabolism regulatory protein AtoC [Edwardsiella ictaluri 93-146] gi|238869668|gb|ACR69379.1| acetoacetate metabolism regulatory protein AtoC, putative [Edwardsiella ictaluri 93-146] Length = 458 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 58/118 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++++RR L A G+E +NG A + P ++L DI MP M GI+ Sbjct: 6 RILIVDDEENVRRMLTTAFALQGHETYDASNGEEALQCFADAPPDVVLMDIRMPTMSGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P V+ +T +A VA ++ + KPF L +L + R L ++ Sbjct: 66 ALKIMRTRQPRTPVILMTAYAEVATAVEALRSGAFDYVIKPFDLEELNLLIRRALQLQ 123 >gi|262200023|ref|YP_003271232.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262083370|gb|ACY19339.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 129 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ IL+ +DD ++ L LGK GY VVS +G A ++ R+E +L++ D++MP M+G Sbjct: 10 SETILVVDDDPEILGMLDLRLGKRGYRVVSAIDGEEALEQARKEKPALVVLDVMMPRMNG 69 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+AR R + +K++ +T A S L KPF L + LL Sbjct: 70 WEVARALRQDQATSKVKIVMLTAIGAQMNEMTSPLYGVDAYLDKPFEFSKLEQTIADLL 128 >gi|253700346|ref|YP_003021535.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775196|gb|ACT17777.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 664 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEM 59 + IL+AEDD +R + L K GY+V+ NG ++ L+L DI+MP Sbjct: 545 TETILVAEDDPSVRNLVDMVLTKHGYQVILAENGQEVVERFTAHSSDIGLILMDIIMPRK 604 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +GIE +L P+ KV+F +G+ + + + +++ KP L+ +V +L Sbjct: 605 NGIEAFAEIKKLQPEAKVLFTSGYTSDFIQ-SRGMEEGVELIMKPVQPVQLLRKVREVL 662 >gi|223936889|ref|ZP_03628798.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223894458|gb|EEF60910.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 938 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 + ILLAED+ +R+ +K L + GY V++ +NG D + + LLL D+VMP++ Sbjct: 817 ETILLAEDEPMVRQLAVKTLERVGYRVIAASNGEETCDLFALHAKDVDLLLLDVVMPKLG 876 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E R E P + V+F +G++ +L + ++L KP+ DL+ +V LL Sbjct: 877 GKEAYSRINETHPGVPVLFCSGYSGNSLEAGYFQVEGLELLQKPYSSNDLLLKVRELL 934 >gi|94266006|ref|ZP_01289728.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453435|gb|EAT03854.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 458 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVR---EEPFSLLLTDIVMP 57 +Q LL DD+ L+ + GY+V + N+G A ++R + P LLLTDI+MP Sbjct: 18 SQGRLLVVDDEPFVLQLVSLQARGLGYQVETANSGPKALLRLRNNNKPPIDLLLTDILMP 77 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +MDG+ L +A L P+L+V+ I+G + + L KPF +++L Sbjct: 78 KMDGLSLLEQARHLQPELEVIVISGQDEIKTAVAAMRRGARDYLQKPFSIQEL 130 >gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 240 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD DMR + + L GY+V NG A +R++ +S D+++P M G E Sbjct: 2 KLLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVMLPGMSGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + + ++ +T A+ L+KPF +L V LL Sbjct: 62 LCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALL 116 >gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 234 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|156975433|ref|YP_001446340.1| hypothetical protein VIBHAR_03164 [Vibrio harveyi ATCC BAA-1116] gi|156527027|gb|ABU72113.1| hypothetical protein VIBHAR_03164 [Vibrio harveyi ATCC BAA-1116] Length = 469 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M Sbjct: 2 VQSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKSNAVDIVVSDVQMAGMG 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L R + P++ V+ +T +A + + ++KPF L+N V+R I Sbjct: 62 GLALLRNIRQNWPNMPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPI 121 Query: 121 KN 122 K+ Sbjct: 122 KS 123 >gi|149921095|ref|ZP_01909554.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149818099|gb|EDM77556.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 776 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 ++++LL ED+D +RR L + LG+ GY VV+ + A + E LL++D+V+ + Sbjct: 657 DERVLLVEDEDAVRRTLTRTLGQLGYRVVAAADPEEAAQRAAALERLDLLVSDVVLAQGT 716 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + + P KV+FITG+ A + + +L KPF L ++ +L Sbjct: 717 GPMVRDAVLAIHPRAKVLFITGYTDDARVREGAEAGHEHLLQKPFTREQLAYKLRAVL 774 >gi|154484836|ref|ZP_02027284.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC 27560] gi|149733789|gb|EDM49908.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC 27560] Length = 236 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|121533862|ref|ZP_01665688.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermosinus carboxydivorans Nor1] gi|121307373|gb|EAX48289.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermosinus carboxydivorans Nor1] Length = 465 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 53/106 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+D R L L + GY + + +G RE+ F + L DI +P MDGI++ Sbjct: 11 VLIIEDEDSFRSLLESRLNRKGYCITATASGEEGLKAAREKSFDVALVDIRLPGMDGIQV 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +L +V+ +TG + ++ L+KP L++L Sbjct: 71 LQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKEL 116 >gi|116619595|ref|YP_821751.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116222757|gb|ABJ81466.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 519 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 + IL+ ED+ +R+ ++ L GY V+ G A K + L + D+VMPEM Sbjct: 391 RETILVVEDEARVRKLIVDVLTGRGYRVLEATRGEEALRICKTHADEIDLAVVDVVMPEM 450 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +L R+ + ++V++I+G+ A+ A L KPF L +V +L Sbjct: 451 NGPDLIRQMQPICKGIRVLYISGYTDEAMIHHGIPESGAAFLQKPFVPDQLARKVREVL 509 >gi|116748266|ref|YP_844953.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Syntrophobacter fumaroxidans MPOB] gi|116697330|gb|ABK16518.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Syntrophobacter fumaroxidans MPOB] Length = 1139 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R + + L +AG+ V +GA A + + + + LL D+ MP MDG+E Sbjct: 191 RILVVDDELVVRDSIKEWLDEAGFAVDMAASGAEAVEMLGRQSYGLLFLDVKMPGMDGVE 250 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + A E+ P+L + +T +A + ++ + KPF + L Sbjct: 251 VLKIAKEMHPELPAVMMTAYATIETAVEAMKVGAKDYIMKPFDIEAL 297 >gi|325274780|ref|ZP_08140810.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas sp. TJI-51] gi|324100077|gb|EGB97893.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas sp. TJI-51] Length = 113 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 57/112 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R+ L L G+ + + A + + + FSL+++D+ MP MD Sbjct: 1 MAIKVLLVEDDRVLRQALGDTLAIGGFAYQAVGSAEEALEALHDGAFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 G +L + P L V+ +T AAV ++ A L KPF + L++ Sbjct: 61 GHQLLAQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLS 112 >gi|187778014|ref|ZP_02994487.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC 15579] gi|187774942|gb|EDU38744.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC 15579] Length = 223 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKEYIDLIISDIMMPNMDGYT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + ++ ++ IT + + + KP + +++ V LL Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALL 117 >gi|163749758|ref|ZP_02157004.1| two-component hybrid sensor and regulator [Shewanella benthica KT99] gi|161330571|gb|EDQ01529.1| two-component hybrid sensor and regulator [Shewanella benthica KT99] Length = 1176 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+++LLAED R L K+G+EV +NG A E + L+L D+ MPEMDG Sbjct: 887 NKRLLLAEDSPSNRVIAGAMLAKSGFEVEFAHNGKEAVKMSAEHDYGLILMDMRMPEMDG 946 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +E R PD ++ +T A D + +A + ++KP + +LV +N+ L Sbjct: 947 VEATREILLAQPDTVILAMT---ANVSKEDVESCLDAGMKDFVAKPVNQLELVKAINKWL 1003 >gi|319427073|gb|ADV55147.1| flagella biosynthesis regulator, FlrC [Shewanella putrefaciens 200] Length = 447 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 59/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE + G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLLLAQYECIDVACGEDAILALKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + P L V+ +T +A + + L+KPF L+N+V+R L +K Sbjct: 65 LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLK 122 >gi|146293674|ref|YP_001184098.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145565364|gb|ABP76299.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella putrefaciens CN-32] Length = 446 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 59/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE + G A +++ F L+++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLLLAQYECIDVACGEDAILALKQHQFDLVISDVQMQGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + P L V+ +T +A + + L+KPF L+N+V+R L +K Sbjct: 65 LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLK 122 >gi|118579852|ref|YP_901102.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502562|gb|ABK99044.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 691 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 6/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVRE--EPFSLLLTDIVMPE 58 KIL+ +D++ +R + L G+ V + +G + Y + R+ +PF ++ D+ +P Sbjct: 565 KILVMDDEEMLRDVITSMLNMLGHRVETACDGKETLTRYQRARDSRDPFDAVILDLTVPG 624 Query: 59 -MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G E R E+DP++K + +G+A+ PD + +LSKP+ ++DL+ + L Sbjct: 625 GMGGRETMARLREIDPEVKGIVSSGYASDMALPDFRSHGFCTILSKPYSMQDLIRVLEEL 684 Query: 118 LT 119 T Sbjct: 685 FT 686 >gi|330954251|gb|EGH54511.1| helix-turn-helix, Fis-type [Pseudomonas syringae Cit 7] Length = 445 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPF---HLRDLVN 112 EL + P + V IT L+ NA K ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHG--NLDTAINALKAGAFDFVTKPVDLGRLRELVN 117 >gi|327482884|gb|AEA86194.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 801 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 ILL +DD +R + L G+ V +G A +R+ LLL D MP M+G Sbjct: 681 HSILLVDDDHSVREVTAQMLENLGFAVTEAESGDHALQLLRDGAAVDLLLADFAMPGMNG 740 Query: 62 IELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR P L V+F+TG+A + L D + ++ KPF L N+++ L Sbjct: 741 GELARAVRVRRPQLPVVFVTGYAELCELGLDGYS-----IIQKPFREEQLANKIHLAL 793 >gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160] Length = 234 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 234 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 64/116 (55%), Gaps = 4/116 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVREEPFSLLLTDIVMPEM 59 +K+L+ ED+D +R F++ L ++GYEVV N G AY++ E F + L DI+MP + Sbjct: 2 KKVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEE-NEGAFDVALLDIMMPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 DG+++ ++ E + + ++ ++ + ++KPF + +L+ V+ Sbjct: 61 DGMQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVD 116 >gi|289578117|ref|YP_003476744.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527830|gb|ADD02182.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 225 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L ED+ + L K L + GYEV + +G SA ++++ P L + DI++P +D Sbjct: 1 MPRKIYLVEDERSLNVLLEKYLQREGYEVTTFLDGNSAMQRIKDLP-DLWILDIMLPGID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + + + + V+FI+ + L D LSKPF R+LV Sbjct: 60 GYELIKAIKQYNQNTPVIFISARNEELDRVVGLELGSDD-------YLSKPFLPRELVIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|302878209|ref|YP_003846773.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580998|gb|ADL55009.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 635 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD +R L K+G+ V + NNG A + V+ P L+++D +MPEMDGIE Sbjct: 326 ILLVDDDRAIRLLYKALLEKSGHSVTTANNGREALESVKASPPQLIISDWMMPEMDGIEF 385 Query: 65 ARRATELDPDLKVMFI 80 R + +PD +++ Sbjct: 386 CRELRK-NPDWHRIYV 400 >gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 228 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 241 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E + ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|256425390|ref|YP_003126043.1| Fis family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256040298|gb|ACU63842.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Chitinophaga pinensis DSM 2588] Length = 394 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R+ L + L GY+V +GA + +++ + +L DI MP+MDG+E Sbjct: 4 ILIIDDEKSIRKTLSEILSYEGYKVEEAADGAEGFKLFKDKQYDAVLCDIKMPKMDGLEF 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +A E++ D+ ++ ++G + ++ +SKP L L L+T++N Sbjct: 64 LEKAREINTDVPIIMVSGHGNIDTAVEAVKKGAYDYISKPPDLNRL------LITLRN 115 >gi|254229239|ref|ZP_04922658.1| CqsS [Vibrio sp. Ex25] gi|262395589|ref|YP_003287442.1| sensor histidine kinase CqsS [Vibrio sp. Ex25] gi|151938324|gb|EDN57163.1| CqsS [Vibrio sp. Ex25] gi|262339183|gb|ACY52977.1| sensor histidine kinase CqsS [Vibrio sp. Ex25] Length = 681 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +R+F L K G+EV+ +G A D + +E L+L DI MP MDG+ Sbjct: 563 RTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQENVDLILMDIEMPIMDGV 622 Query: 63 ELARRATELDPD 74 E +RR D + Sbjct: 623 EASRRIRSSDKN 634 >gi|39996422|ref|NP_952373.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983302|gb|AAR34696.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 460 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +RR L L + GY+V++ +G E +L++TD+ MP M G Sbjct: 9 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPALVVTDLKMPGMGGFR 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 L + PD V+ IT F AV D+ ++KPF+ Sbjct: 69 LLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFN 111 >gi|109897855|ref|YP_661110.1| response regulator receiver protein [Pseudoalteromonas atlantica T6c] gi|109700136|gb|ABG40056.1| response regulator receiver protein [Pseudoalteromonas atlantica T6c] Length = 439 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 66/112 (58%), Gaps = 1/112 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +D+ ++ + + + L + +++++ +GA A + +++E ++++D+ MP M G E Sbjct: 14 VLCVDDEVNILKAIKRVLHRQDFKLITAESGAQALEILKQESVQVIVSDMRMPNMSGAEF 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVN 115 +++TE+ PD + +TG++ ++ D+ N + L KP+ +L+ VN Sbjct: 74 LQKSTEIIPDCYRILLTGYSDMSSTIDAVNKGDIDRYLQKPWDNHELITTVN 125 >gi|330811465|ref|YP_004355927.1| response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379573|gb|AEA70923.1| Putative response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 455 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++ + L + L YE++ ++GA A + ++E P L++TD MP MDG L Sbjct: 15 VLLVDDEESILNSLRRLLRSQPYEILLADSGAKALEILKERPVDLVMTDARMPNMDGATL 74 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +L P + +TG+A V + + N + + LSKP++ +LV + + L+ ++ Sbjct: 75 LAEIRKLYPSTLRILLTGYADVDMMTKAINEGQLYRYLSKPWNDEELVQALRQALSHQH 133 >gi|255264744|ref|ZP_05344086.1| nitrogen assimilation regulatory protein [Thalassiobium sp. R2A62] gi|255107079|gb|EET49753.1| nitrogen assimilation regulatory protein [Thalassiobium sp. R2A62] Length = 454 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 1 MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E + E P L V+ I+ + + L KPF L DL+ R L + Sbjct: 61 GLEALPKIGEARPGLPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRAARALEV 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|170745452|ref|YP_001766909.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170659053|gb|ACB28107.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 916 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + + + ++ + LL+TD+ +P M+ Sbjct: 796 ETVLIVDDEPSVRMLVTEVLEDLGYTAIEAADSVAGLKVLQSDVRIDLLVTDVGLPGGMN 855 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E PDLKV+FITG+A A+ + +VL+KPF L L + L+ Sbjct: 856 GRQMADAGRERRPDLKVLFITGYAENAVLGNGYLRPGMQVLTKPFVLETLATRIKDLI 913 >gi|170025129|ref|YP_001721634.1| two component, sigma54 specific, Fis family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186894605|ref|YP_001871717.1| two component, sigma54 specific, Fis family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|169751663|gb|ACA69181.1| two component, sigma54 specific, transcriptional regulator, Fis family [Yersinia pseudotuberculosis YPIII] gi|186697631|gb|ACC88260.1| two component, sigma54 specific, transcriptional regulator, Fis family [Yersinia pseudotuberculosis PB1/+] Length = 454 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD +I+AL K GY+ +NG A + +E PF L+LTD+ M EMDGIE Sbjct: 8 ILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDGIEA 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + +P + ++ +T ++ V ++ L+KP Sbjct: 68 LKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPL 108 >gi|166033276|ref|ZP_02236105.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC 27755] gi|226324215|ref|ZP_03799733.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758] gi|238925827|ref|YP_002939345.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656] gi|257414028|ref|ZP_04745025.2| DNA-binding response regulator VicR [Roseburia intestinalis L1-82] gi|323341562|ref|ZP_08081799.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|166027633|gb|EDR46390.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC 27755] gi|225207764|gb|EEG90118.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758] gi|238877504|gb|ACR77211.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656] gi|257201430|gb|EEU99714.1| DNA-binding response regulator VicR [Roseburia intestinalis L1-82] gi|291540566|emb|CBL13677.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] gi|323091013|gb|EFZ33648.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|197119995|ref|YP_002140422.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] gi|197089355|gb|ACH40626.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] Length = 379 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +K +L DD+ + R L K + Y+V+ +GA A + + ++LTD++MPEMD Sbjct: 16 IEKKTVLIVDDEAVIRDLCKRV-LHDYDVIEAGDGAEALEIFHKGGVDVILTDVMMPEMD 74 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+EL + E +P + V+ +TGFA L + ++KP +L L + V++ L Sbjct: 75 GLELLKNLKEREPTVVVIIMTGFADKELILKALKADADDFITKPLNLLQLKSAVDKALVK 134 Query: 121 K 121 K Sbjct: 135 K 135 >gi|329766393|ref|ZP_08257939.1| response regulator receiver protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137162|gb|EGG41452.1| response regulator receiver protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 121 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 22/125 (17%) Query: 1 MNQK--ILLAEDDDDM---RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 M+QK IL+ +DD D+ FLIK+ AGY+V+ NGA A K +E +L+L D+ Sbjct: 1 MSQKKVILIVDDDVDLLENTAFLIKS---AGYDVIMAQNGADAVHKYKETNPNLVLMDVR 57 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL------SKPF---H 106 MP +DG + + + D + KV+ IT +A D AK L SKP+ H Sbjct: 58 MPILDGYDAFFKIKQFDSNAKVILITAYA-----HDEKKHTKAKSLNLIDTISKPYTIEH 112 Query: 107 LRDLV 111 L +++ Sbjct: 113 LEEVI 117 >gi|315300747|gb|EFU59972.1| response regulator receiver domain protein [Escherichia coli MS 16-3] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I + L+P + V+ +T +++V ++ L KP +L + + + L Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQSTLEKAL 121 >gi|312879449|ref|ZP_07739249.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782740|gb|EFQ23138.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 985 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + ILL ED+D +R L + GY V+ +G A + LLLTD+VMPEM+ Sbjct: 865 ETILLVEDNDMVRSLACILLRRQGYTVLPAADGKEALSVLESHGGAVHLLLTDVVMPEMN 924 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L PD++V+F++G+ + L KPF L +V L Sbjct: 925 GRVLYDAMKVRVPDIRVLFMSGYTENVIAHQGVLDPGVHFLPKPFSAETLAAKVREAL 982 >gi|300979679|ref|ZP_07174651.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300409463|gb|EFJ93001.1| response regulator receiver domain protein [Escherichia coli MS 45-1] Length = 384 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSV 89 >gi|238922420|ref|YP_002935934.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] gi|238874092|gb|ACR73800.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|225027390|ref|ZP_03716582.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353] gi|224955287|gb|EEG36496.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|197302214|ref|ZP_03167273.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC 29176] gi|197298645|gb|EDY33186.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC 29176] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|218781758|ref|YP_002433076.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218763142|gb|ACL05608.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 122 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+AEDD R+ L K + G+ V+ NG A++ + P S+L+TD++MPEMDG Sbjct: 3 KILIAEDDLITRKVLYKIVEGMGHSVIMSPNGRHAWETLETNPDISMLITDVMMPEMDGR 62 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 EL RA E +L ++ I+ A V +N K LSKP + + + R + Sbjct: 63 ELIELVRAREEFQNLPIIIIS--AVVGPKAVANLLKMGATLFLSKPLKVDETRKYIERWV 120 Query: 119 TI 120 + Sbjct: 121 EV 122 >gi|197116480|ref|YP_002136907.1| response receiver-modulated cyclic diguanylate phosphodiesterase [Geobacter bemidjiensis Bem] gi|197085840|gb|ACH37111.1| response receiver-modulated cyclic diguanylate phosphodiesterase [Geobacter bemidjiensis Bem] Length = 357 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 59/113 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD + + L +G+EV S +NG A +R P ++LTD+ MP+M GIE Sbjct: 8 RVVLVDDDPYVLESVALLLSVSGFEVTSFSNGHEALQLLRRSPPDVVLTDVNMPQMSGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + + D D+ V+ +T +A + + + + KPF L+ V + Sbjct: 68 LLEQIHDFDRDIPVILMTAYAELEMAVSAIKKGAFDFIIKPFKTPYLIYAVEK 120 >gi|158522821|ref|YP_001530691.1| multi-sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511647|gb|ABW68614.1| multi-sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] Length = 498 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 55/102 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D+R ++ L + EV NG A + + E F +LL D+ MP +DG++ Sbjct: 8 KILVVDDEKDIREGCVRVLRRLDCEVSMAANGHEALELLGREFFDVLLLDLKMPGIDGMD 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + R + + D+ V+ ITGFA V ++ + KPF Sbjct: 68 VLREIQQQERDILVIVITGFATVETAIEAMKQGAYDFIPKPF 109 >gi|254182924|ref|ZP_04889517.1| chemotaxis protein CheY [Burkholderia pseudomallei 1655] gi|184213458|gb|EDU10501.1| chemotaxis protein CheY [Burkholderia pseudomallei 1655] Length = 123 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL +D +RR + L +GYEV +G + +K + + L+LTD MP MDGI Sbjct: 5 KKILSVDDTVTIRRLIAHVLTTSGYEVDEAQDGCAGLEKAAKNDYDLILTDYNMPHMDGI 64 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R RA + ++ +T L + KP H LV V RL+ Sbjct: 65 SMLRAIRALPVHGATPIVVVTTEFGADLKQQGRDAGATGWMVKPIHPGKLVEMVRRLI 122 >gi|322805225|emb|CBZ02789.1| two-component system response regulator QseB [Clostridium botulinum H04402 065] Length = 223 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKEYIDLIISDIMMPNMDGYT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + ++ ++ IT + + + KP + +++ V LL Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALL 117 >gi|322388998|ref|ZP_08062568.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321144303|gb|EFX39711.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 244 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED++ +R+ L + + ++ N NG A++K +++P +LLTDI MP+M+G Sbjct: 4 IMIVEDEELIRQGLTSLVDYEQFGMIVINQAENGREAWEKFQDQPADILLTDINMPQMNG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 ++LA E P ++F+TG+ Sbjct: 64 LDLAHLVKEQSPSCHIIFLTGY 85 >gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 7/115 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+ + RFL L GYE+ +G DK E + L+L DI++P+++G+ Sbjct: 7 ERILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIMLPKLNGM 66 Query: 63 ELARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ RR ++ D+ ++ +T + + D+ A ++KPF + +L+ + Sbjct: 67 EVCRRIRQI-SDIPIIMLTAKDETTDIVMGLDTGAD---DYITKPFAIEELLARI 117 >gi|166211745|ref|ZP_02237780.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar Antiqua str. B42003004] gi|167400429|ref|ZP_02305942.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424106|ref|ZP_02315859.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229894057|ref|ZP_04509243.1| response regulator of zinc sigma-54-dependent two-component system [Yersinia pestis Pestoides A] gi|229903422|ref|ZP_04518535.1| response regulator of zinc sigma-54-dependent two-component system [Yersinia pestis Nepal516] gi|294503177|ref|YP_003567239.1| transcriptional regulatory protein hydG [Yersinia pestis Z176003] gi|166207516|gb|EDR51996.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar Antiqua str. B42003004] gi|167050378|gb|EDR61786.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056955|gb|EDR66718.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679192|gb|EEO75295.1| response regulator of zinc sigma-54-dependent two-component system [Yersinia pestis Nepal516] gi|229703942|gb|EEO90955.1| response regulator of zinc sigma-54-dependent two-component system [Yersinia pestis Pestoides A] gi|262361214|gb|ACY57935.1| transcriptional regulatory protein hydG [Yersinia pestis D106004] gi|294353636|gb|ADE63977.1| transcriptional regulatory protein hydG [Yersinia pestis Z176003] gi|320014314|gb|ADV97885.1| Response regulator of zinc sigma-54-dependenttwo-component system [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 454 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD +I+AL K GY+ +NG A + +E PF L+LTD+ M EMDGIE Sbjct: 8 ILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDGIEA 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + +P + ++ +T ++ V ++ L+KP Sbjct: 68 LKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPL 108 >gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 229 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD D+RR L+ AL Y V +G A +E P+ L + D+ +P++ GIE Sbjct: 2 KLLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLPKLSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ + + ++ +T + L KPFH+ +L +N LL Sbjct: 62 VIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALL 116 >gi|322385260|ref|ZP_08058906.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270683|gb|EFX53597.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 232 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L + GY V+ +G D R++ L++TDI+MP MD Sbjct: 1 MGKTILLVDDEMDILDIQKRYLMQEGYHVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSDQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|315649918|ref|ZP_07903000.1| two component transcriptional regulator, AraC family protein [Paenibacillus vortex V453] gi|315274717|gb|EFU38099.1| two component transcriptional regulator, AraC family protein [Paenibacillus vortex V453] Length = 524 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 7/113 (6%) Query: 4 KILLAEDDD----DMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+LL +D++ MRRF+ E+V S NN SA + ++ + +L++D+ MP Sbjct: 3 KVLLVDDEELDLEGMRRFI--PWSDLDMELVGSVNNALSACEIIKNQEVDILVSDVNMPY 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 M G+ELAR A E P+++++F++G+ + + K + KP + R+LV Sbjct: 61 MSGLELARIAIEHKPNIRIIFVSGYQEFSYVQQALLLKAYSYVLKPMNDRELV 113 >gi|301309776|ref|ZP_07215715.1| putative DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 20_3] gi|300831350|gb|EFK61981.1| putative DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 20_3] Length = 911 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R +L L + V+ NGA A D + +E SL+++D++MPEM+G EL Sbjct: 660 ILIVEDDWDIRAYLQHEL-SGNFNVLVAENGAKALDILLKENVSLVVSDVMMPEMNGFEL 718 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLRDLVNEVNRLLT 119 RR + D+ + I AL+ DS + + KPF++ + + +LL Sbjct: 719 CRR---VKSDMALSHIPVILLTALSDDSQRLYGFEGGADEYIQKPFNIEIVKLRIIKLLE 775 Query: 120 IKN 122 +N Sbjct: 776 ERN 778 >gi|298376456|ref|ZP_06986411.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266334|gb|EFI07992.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 911 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R +L L + V+ NGA A D + +E SL+++D++MPEM+G EL Sbjct: 660 ILIVEDDWDIRAYLQHEL-SGNFNVLVAENGAKALDILLKENVSLVVSDVMMPEMNGFEL 718 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLRDLVNEVNRLLT 119 RR + D+ + I AL+ DS + + KPF++ + + +LL Sbjct: 719 CRR---VKSDMALSHIPVILLTALSDDSQRLYGFEGGADEYIQKPFNIEIVKLRIIKLLE 775 Query: 120 IKN 122 +N Sbjct: 776 ERN 778 >gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|260439186|ref|ZP_05793002.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292808388|gb|EFF67593.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 223 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 3 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 63 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 117 >gi|255014965|ref|ZP_05287091.1| two-component system sensor kinase/response regulator, hybrid [Bacteroides sp. 2_1_7] Length = 911 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R +L L + V+ NGA A D + +E SL+++D++MPEM+G EL Sbjct: 660 ILIVEDDWDIRAYLQHEL-SGNFNVLVAENGAKALDILLKENVSLVVSDVMMPEMNGFEL 718 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLRDLVNEVNRLLT 119 RR + D+ + I AL+ DS + + KPF++ + + +LL Sbjct: 719 CRR---VKSDMALSHIPVILLTALSDDSQRLYGFEGGADEYIQKPFNIEIVKLRIIKLLE 775 Query: 120 IKN 122 +N Sbjct: 776 ERN 778 >gi|212691087|ref|ZP_03299215.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855] gi|212666319|gb|EEB26891.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855] Length = 1308 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+DD RRFL+ L K Y+V +NG A + + ++ ++++D++MP MDG+EL Sbjct: 1067 VLVVEDNDDFRRFLVGCL-KEHYQVFEASNGKEALEILSQQSVQMVISDVMMPVMDGLEL 1125 Query: 65 ARRATELD---PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A + D + V+ +T A ++KPF+L L+ + +LL Sbjct: 1126 C-HAVKTDIRFSHIPVILLTARTAEEHVLGGLREGADDYITKPFNLDILLLRIQKLL 1181 >gi|170288268|ref|YP_001738506.1| response regulator receiver protein [Thermotoga sp. RQ2] gi|170175771|gb|ACB08823.1| response regulator receiver protein [Thermotoga sp. RQ2] Length = 122 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KILL +D +R+ + L K GYEV+ NG A +++ E L++ DI+MP MD Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALERLSEFTPDLIVLDIMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 G + ++ E + ++ I A +S A KV+ KPF + EV LL Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 >gi|153854281|ref|ZP_01995580.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814] gi|149753056|gb|EDM62987.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|83592771|ref|YP_426523.1| two component, sigma54 specific, Fis family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575685|gb|ABC22236.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodospirillum rubrum ATCC 11170] Length = 445 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + +DDD MR ++AL AG V A + +++TD+ MP +DG+EL Sbjct: 4 VAFIDDDDTMRAANVQALTLAGLTVAPFALPHEALAAIDGAFPGVVVTDVRMPRIDGLEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR +DPDL V+ ITG +A+ D+ L+KP+ L+ V L Sbjct: 64 FRRLRAIDPDLPVILITGHGDIAMAVDAMREGAYDFLAKPYAADRLLTSVRHAL 117 >gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 229 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED+ + R L L GYE +NG A +K+ +E + L+L DI++P++ Sbjct: 1 MAERILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E+ RR + ++ +T V ++KPF + +L+ V Sbjct: 61 GLEVLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARV 114 >gi|150019117|ref|YP_001311371.1| response regulator receiver protein [Clostridium beijerinckii NCIMB 8052] gi|149905582|gb|ABR36415.1| response regulator receiver protein [Clostridium beijerinckii NCIMB 8052] Length = 119 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR + L K +E+V NNG A D ++E ++ DI MP+MDGI Sbjct: 3 RVLIVDDAAFMRMMIKDILEKNDFEIVGEANNGIVAVDLYKKEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ E DPD KV+ + ++ D+ + KPF ++ + +++ Sbjct: 63 EAVKQIKEFDPDAKVIMCSAMGQQSMVMDAIRAGAKDFIVKPFQADRVLEAIKKVV 118 >gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 234 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|320353585|ref|YP_004194924.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122087|gb|ADW17633.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 453 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ KIL+ +D+ R L +GK G+ + +G A D ++++ L+LTD+ MP Sbjct: 1 MNQRKILIVDDEPIARDNLAHIVGKDGHTALVAADGQQAIDLLKKQEVDLVLTDLCMPGK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ + A + P ++V+ ITG A+V ++ ++KPF + +L V++ L Sbjct: 61 DGMAVLDEAKQRWPAVEVVVITGHASVDTAVEAMRRGAYHYVAKPFKINELRAVVDKAL 119 >gi|308048750|ref|YP_003912316.1| Fis family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307630940|gb|ADN75242.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ferrimonas balearica DSM 9799] Length = 450 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R L+ L GY V NG A ++ + P +L+++D+ M MDG+ L Sbjct: 6 ILVVEDDLGLREALVDTLLLGGYRCVEAGNGDEALVQLNQHPVALMISDVQMAGMDGMTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + L ++ +T + ++ ++ L+KPF + L+++++R L Sbjct: 66 LKTVRAQNSRLPILLMTAYGSIDAAVEAMRYGANDYLAKPFAPQVLLDQISRYL 119 >gi|297617152|ref|YP_003702311.1| response regulator receiver protein [Syntrophothermus lipocalidus DSM 12680] gi|297144989|gb|ADI01746.1| response regulator receiver protein [Syntrophothermus lipocalidus DSM 12680] Length = 120 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + +L+ +D MR + L K GY VV NG A +K +E L+ DI MPEM Sbjct: 1 MAKTVLVVDDAAFMRMMIKDILTKNGYAVVGEAENGLVALEKYKELNPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI R ++DP K++ + A+ D+ + KPF +V V++ + Sbjct: 61 DGITAVREIRKIDPGAKIIMCSAMGQQAMVIDAIQAGARDFVVKPFQPERVVEAVSKAI 119 >gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 238 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+D +RR L L + YEV NG A E + L+L DI+MP MDGIE Sbjct: 6 KILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPGMDGIE 65 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + R T+ P VM +T A + KPF R++V V LL Sbjct: 66 VCQELRKTKATP---VMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALL 119 >gi|257481623|ref|ZP_05635664.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 445 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPF---HLRDLVN 112 EL + P + V IT L+ +NA K ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHG--NLDTATNALKAGAFDFVTKPVDLGRLRELVN 117 >gi|218692285|ref|YP_002400497.1| transcriptional regulatory protein ZraR [Escherichia coli ED1a] gi|218429849|emb|CAR10817.2| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator ; sigma54 interaction protein [Escherichia coli ED1a] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSV 89 >gi|163781829|ref|ZP_02176829.1| transcriptional regulator (NtrC family) protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883049|gb|EDP76553.1| transcriptional regulator (NtrC family) protein [Hydrogenivirga sp. 128-5-R1-1] Length = 450 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+ +D++ +R L + L + GY V + A ++ EE F +++ D+ MP+ D Sbjct: 1 MSVKLLIVDDEEGIRNSLGEILREEGYRVSLAPTLSEAKRRISEEFFHVVVLDVWMPDGD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE EL PD V+ ITG V + + L KPF + L+TI Sbjct: 61 GIEFMDTLKELSPDTVVVVITGHGNVEMAVKAIRKGAYDFLEKPFSMDKF------LVTI 114 Query: 121 KN 122 K+ Sbjct: 115 KH 116 >gi|160884768|ref|ZP_02065771.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483] gi|156109803|gb|EDO11548.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483] Length = 1320 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 2/89 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + ILL +D+ ++ +L K LGK+ + +++ NG A ++++ SL+++D++MPE+D Sbjct: 1067 LEKTILLVDDNPEILNYLKKELGKS-FNILTATNGKEALGMLQQQNISLVVSDVMMPEID 1125 Query: 61 GIELARRATELDPDLKVMFITGFAAVALN 89 GIEL +R + D +L + I A A+N Sbjct: 1126 GIELCKR-IKTDHNLSHLPIILLTAKAMN 1153 >gi|78221996|ref|YP_383743.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193251|gb|ABB31018.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 454 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ IL+ +D+ ++R L L GY V +G A D ++E L+L DI MP +D Sbjct: 1 MNETILVVDDEQNIRTALAGILEDEGYRPVFAKDGLEALDMAKKENPDLVLLDIWMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E + E P L V+ ++G + S + KP L + L+T+ Sbjct: 61 GLETLQALKEFHPLLTVVMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKV------LVTV 114 Query: 121 KN 122 KN Sbjct: 115 KN 116 >gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 234 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|297570096|ref|YP_003691440.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926011|gb|ADH86821.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 909 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + ILL ED+ +R L + L GY++++ + A A + EP LL TD++MP +G Sbjct: 789 ETILLVEDEAAVRDILNRTLATLGYKIITARDPAEAEELFTAEPEIDLLFTDVIMPGGNG 848 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L ++ +LKV+F++G+ + + KPF D+V V L Sbjct: 849 MDLYQQLAAKRSNLKVLFMSGYNETIMKQKKMDFAGFPFIQKPFATVDVVLAVRNAL 905 >gi|322421560|ref|YP_004200783.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127947|gb|ADW15507.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 379 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K +L DD+ + R L K + Y VV +G AY+ ++LTD++MP MDGI Sbjct: 18 KKTVLIVDDEGVIRDLCKRV-LNDYHVVEAGDGQEAYEIFLRGGIDVILTDVMMPRMDGI 76 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 EL ++ E +P + V+ +TGFA L + ++KP +L L + + + L K Sbjct: 77 ELLKKLKEREPTMVVIIMTGFADKDLILKALKADADDFITKPLNLLQLKSAIGKALVKK 135 >gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032] gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KIL+ ED+ + R L L GYEV G + EE F L+L D+++PE+ Sbjct: 1 MNKGKILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVMLPEL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E+ RR + + +M IT +V PD + + ++KPF + +L+ + Sbjct: 61 SGLEVLRRVRKTNTATPIMLITARDSV---PDKVSGLDLGANDYITKPFDIEELLARI 115 >gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] Length = 234 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|108757101|ref|YP_633208.1| response regulator/GGDEF/GAF domain-containing protein [Myxococcus xanthus DK 1622] gi|108460981|gb|ABF86166.1| response regulator/GGDEF/GAF domain protein [Myxococcus xanthus DK 1622] Length = 616 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD R+ L G+ VV+ N A ++ F L++TD+VMP +D Sbjct: 1 MAGPILVVDDDMFFRQLASDLLTHNGHRVVAVENATLALEEAARTSFDLVITDVVMPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R E DPD +V+ ++ + + + A LSKP + D++ V+R L Sbjct: 61 GFALTARLRERDPDQEVILVSQRTDIRGSEVALRSGAADCLSKPVNANDMLLAVDRAL 118 >gi|71906414|ref|YP_284001.1| helix-turn-helix, Fis-type [Dechloromonas aromatica RCB] gi|71846035|gb|AAZ45531.1| Helix-turn-helix, Fis-type [Dechloromonas aromatica RCB] Length = 457 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ EDD +R + L AG V+ + G +A + E+ FS++++D+ M MDG Sbjct: 5 NLPILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMMPMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 I L + P L V+ +T +A V D+ L KPF + L+ +N+ Sbjct: 65 ITLLKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQALLAHINK 119 >gi|331006990|ref|ZP_08330228.1| sensor histidine kinase/response regulator [gamma proteobacterium IMCC1989] gi|330419208|gb|EGG93636.1| sensor histidine kinase/response regulator [gamma proteobacterium IMCC1989] Length = 2162 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +++ +D +R+ + L + G++V++ +G A + +R++ L+L DI MP MDG Sbjct: 2040 NPLVMVVDDSVTVRKVTTRFLERQGFDVITAKDGIHAIEVLRDQLPDLMLLDIEMPRMDG 2099 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+AR RAT L ++ IT A + + KPF L+ ++ LL Sbjct: 2100 FEVARRVRATSTTTHLPIIMITSRTGEKHRETGLAAGANEYMGKPFQEDILLENIHHLLQ 2159 Query: 120 IKN 122 IK+ Sbjct: 2160 IKH 2162 >gi|329929537|ref|ZP_08283261.1| putative bacteriochlorophyll 4-vinyl reductase [Paenibacillus sp. HGF5] gi|328936262|gb|EGG32711.1| putative bacteriochlorophyll 4-vinyl reductase [Paenibacillus sp. HGF5] Length = 391 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 2 NQKILLAEDDDDMRRFLIKAL--GKAGYEVVSCN-NGASAYDKVREEPFSLLLTDIVMPE 58 N K+++A+D+ +R+ L + + G EVV+ + NG +A++ E +++TDIVMPE Sbjct: 6 NIKVMIADDESIVRKGLRSTVPWERFGMEVVADSPNGQAAWEAFLEYRPQVVITDIVMPE 65 Query: 59 MDGIELARRATELDPDLKVMFIT 81 MDGIEL+R+ E P+ +++ ++ Sbjct: 66 MDGIELSRKVKEAAPETRIILLS 88 >gi|262407431|ref|ZP_06083979.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262354239|gb|EEZ03331.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1358 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE +L+++DI+MP++DGI Sbjct: 1106 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGGEGERKAIEENPNLIISDIMMPKVDGI 1164 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1222 >gi|225377469|ref|ZP_03754690.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM 16841] gi|225210686|gb|EEG93040.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM 16841] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|21629524|gb|AAL78043.1| response regulator CovR [Streptococcus dysgalactiae subsp. equisimilis] Length = 101 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVTRR 67 >gi|33863265|ref|NP_894825.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9313] gi|33640714|emb|CAE21169.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9313] Length = 245 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 17/118 (14%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 ++L+ EDDD +R + +AL G+E + C +G A + +P F L++ D+++P + Sbjct: 18 RLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVMLPGIG 77 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+++ RR E DP ++ I+ + + D L KPF +R+LV Sbjct: 78 GLDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADD-------YLVKPFSVRELV 128 >gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1681 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + ++ L +AG V N+G A +++ ++ F +L D MP +DG E Sbjct: 1344 EVLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIERIEQQYFDCVLMDCQMPVLDGYE 1403 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR EL P+ + I A A++ D + A ++KP H++DL + R +T Sbjct: 1404 ATRRIREL-PEFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMARRITP 1462 Query: 121 K 121 K Sbjct: 1463 K 1463 >gi|153949144|ref|YP_001401783.1| ZraR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|152960639|gb|ABS48100.1| transcriptional regulatory protein ZraR [Yersinia pseudotuberculosis IP 31758] Length = 454 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD +I+AL K GY+ +NG A + +E PF L+LTD+ M EMDGIE Sbjct: 8 ILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDGIEA 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + +P + ++ +T ++ V ++ L+KP Sbjct: 68 LKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPL 108 >gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 218 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 12/132 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ EDD + R + L AGY S +G A++++++E F L+L D+++P MD Sbjct: 1 MEHKVLIVEDDLSIARLIKLNLNLAGYLTESVEDGLLAFERIQKEKFDLILLDVMIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV--------- 111 G +L + L ++ V+F+T + D + KPF +L+ Sbjct: 61 GFKLMEKIRPL--NIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRR 118 Query: 112 -NEVNRLLTIKN 122 +V++LLT KN Sbjct: 119 YGKVHKLLTYKN 130 >gi|320353531|ref|YP_004194870.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122033|gb|ADW17579.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1145 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 Q +L+ ED++ M L GY V++ A K LL+ D++MPEM+ Sbjct: 1026 QTVLVVEDEEAMLTLNRSMLEYLGYTVLTAGTPGEALRLAKAHGASIELLVVDVIMPEMN 1085 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G EL++ L P +K +F +G+ A + + K + ++KPF +L +V Sbjct: 1086 GRELSKEIETLCPRVKTLFTSGYTANVIAHRAVLDKGVRFMTKPFSTGELARKV 1139 >gi|285019849|ref|YP_003377560.1| two-component regulatory system regulatory ntrc transcription regulator protein [Xanthomonas albilineans GPE PC73] gi|283475067|emb|CBA17566.1| probable two-component regulatory system regulatory ntrc transcription regulator protein [Xanthomonas albilineans] Length = 474 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-VREEPFSLLLTDIVMPEMDG 61 Q+I + +DD +R L AL AGY V S +N +A V P LL TD+ MP DG Sbjct: 9 QRIWVVDDDRSVRFVLSTALRDAGYSVDSFDNAIAALQALVERSPPDLLFTDVRMPGDDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L + P L V+ ++ + VA + + LSKPF L D V R L Sbjct: 69 LVLLDKLKAAHPQLPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAARAL 125 >gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC 49176] gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC 49176] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++ + K L GYEV +C +G A++ + E + L++ D+ +P++DG+E Sbjct: 14 RILVVEDEQELCESVAKGLRLDGYEVDTCFDGEEAWEIISVESYDLIILDLNLPKLDGME 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + D + V+ ++ + D L KPFH +L V L Sbjct: 74 VLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSL 127 >gi|193213865|ref|YP_001995064.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] gi|193087342|gb|ACF12617.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] Length = 123 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 KIL+ ED+ L L GY + G A D+VR FSL+L DI + M+GI Sbjct: 6 KILIVEDEAITSMLLEVELSNLGYACTCVSTGEEAIDRVRMMNFSLVLMDIRLAGGMNGI 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E A + + L ++F TG++ + D+N L KP L++L+ + LL Sbjct: 66 ETAAQIRQQAQTLPIIFATGYSDKKMIEDANHVNPVCYLVKPLKLKELLAVIQSLL 121 >gi|332521694|ref|ZP_08398147.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332042783|gb|EGI78983.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + + + ++L + V+ C NG A + + LL+ D++MP+ DG L Sbjct: 7 ILLAEDEPALGQIIKESLETRNFNVLLCENGEIALETYNLQKPELLVLDVMMPKKDGFTL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ E D ++ ++F+T + + L KPF + +L+ +N LL Sbjct: 67 AKEIRETDNEIPIIFLTAKSQTQDVVEGFHIGGNDYLKKPFSIEELIVRINNLL 120 >gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 249 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD D+ L AL G+EV + +GASA + R ++ D+++P+ DG+ Sbjct: 23 RVLVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDTDGLT 82 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E+ PD+ V+ +T AV ++KPF L +++ + LL Sbjct: 83 VLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLL 137 >gi|258512232|ref|YP_003185666.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478958|gb|ACV59277.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 221 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 1/107 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + FL L +G EV +G +A ++ R EP+ LLL DIV+P M G++ Sbjct: 2 RVLIVEDEPGLVEFLRLELELSGVEVDVAMDGETALERARSEPYDLLLVDIVLPGMSGVD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R ++ +M +T AVA L KPF + +L Sbjct: 62 LCREVRRFS-NVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEEL 107 >gi|226228635|ref|YP_002762741.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091826|dbj|BAH40271.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 1313 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 Q++LL +D+D + + + L + G+ V +NG A ++V P F L+LTD MP M G Sbjct: 1194 QRVLLVDDEDAVAGVIRRLLERNGFNVTLASNGVQALERVAAHPAFDLILTDQTMPMMTG 1253 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL R ++ +GF A ++ + KPF DL+ V Sbjct: 1254 LELVERLRATGHHTPIILASGFGASIDGERVAHLRDVHRIDKPFASNDLLRLV 1306 >gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 301 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D L+ L AG+EV +G SA +++ ++L D++MP +D Sbjct: 1 MTKTVLIIDDVPANVGVLLDVLAAAGFEVAVAESGQSALEQLAWLKPDIILLDVLMPGLD 60 Query: 61 GIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E RR A E D+ V+F+T V A L+KP H +++ VN L Sbjct: 61 GFETCRRLKAREATADVPVLFMTALTEVVDKVKGFAAGAVDYLAKPLHPEEVLARVNAHL 120 Query: 119 TIKN 122 I+ Sbjct: 121 KIRE 124 >gi|160942544|ref|ZP_02089792.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii M21/2] gi|158446160|gb|EDP23163.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii M21/2] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|157150116|ref|YP_001450468.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074910|gb|ABV09593.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 232 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + +++ L++TDI+MP MD Sbjct: 1 MEKTILLVDDEVDILDIQKRYLLQAGYQVLVAHDGLEGLELFKKKSVDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + L PD +F T ++L D ++KPF R+LV Sbjct: 61 GYDFISEVQYLAPDQPFLFTTAKTSEQDRIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match) [Frankia alni ACN14a] Length = 358 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +G A RE ++ DI++P+MDG+E Sbjct: 20 RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGLE 79 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR PD+ V+F+T AV ++KPF L +LV + L+ Sbjct: 80 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLM 134 >gi|51595549|ref|YP_069740.1| transcriptional regulatory protein hydG [Yersinia pseudotuberculosis IP 32953] gi|51588831|emb|CAH20445.1| transcriptional regulatory protein hydG [Yersinia pseudotuberculosis IP 32953] Length = 454 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD +I+AL K GY+ +NG A + +E PF L+LTD+ M EMDGIE Sbjct: 8 ILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDGIEA 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + +P + ++ +T ++ V ++ L+KP Sbjct: 68 LKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPL 108 >gi|26250776|ref|NP_756816.1| transcriptional regulatory protein ZraR [Escherichia coli CFT073] gi|110644339|ref|YP_672069.1| transcriptional regulatory protein ZraR [Escherichia coli 536] gi|191174305|ref|ZP_03035813.1| response regulator ZraR [Escherichia coli F11] gi|300985437|ref|ZP_07177440.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|306812019|ref|ZP_07446227.1| transcriptional regulatory protein ZraR [Escherichia coli NC101] gi|26111207|gb|AAN83390.1|AE016770_190 Transcriptional Regulatory protein zraR [Escherichia coli CFT073] gi|110345931|gb|ABG72168.1| transcriptional regulatory protein ZraR [Escherichia coli 536] gi|190905437|gb|EDV65068.1| response regulator ZraR [Escherichia coli F11] gi|300306529|gb|EFJ61049.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|305854624|gb|EFM55060.1| transcriptional regulatory protein ZraR [Escherichia coli NC101] gi|324015258|gb|EGB84477.1| response regulator receiver domain protein [Escherichia coli MS 60-1] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSV 89 >gi|331090682|ref|ZP_08339531.1| hypothetical protein HMPREF9477_00174 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400096|gb|EGG79747.1| hypothetical protein HMPREF9477_00174 [Lachnospiraceae bacterium 2_1_46FAA] Length = 265 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 4 KILLAEDDD-DMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KI++ +D+ +++F ++ G G E+ + N AY+ ++E P ++ TDI MPEM+G Sbjct: 2 KIVIVDDEWLQIKQFEMECEGLKGVEIAATFTNPLEAYEYLKEHPVEVVFTDIEMPEMNG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVA 87 + + EL PDL ++F+TG+ A Sbjct: 62 LAFGKELRELYPDLVLVFVTGYEEYA 87 >gi|302671848|ref|YP_003831808.1| response regulator domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396321|gb|ADL35226.1| response regulator domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 118 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +D RR L L +AGYEVV NG YD+ + ++ DI MP +DG Sbjct: 2 KKVLIVDDSRTSRRVLKDILDRAGYEVVGEAINGQEGYDQYIKLQPDIVTMDITMPVIDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE + + DPD KV+ IT ++ + ++KPF +V+ + L Sbjct: 62 IESLKLIRKYDPDAKVIMITAAGQKEKMVEAVKFGAVEFITKPFMEESVVSALQHCL 118 >gi|289649194|ref|ZP_06480537.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869501|gb|EGH04210.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 461 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|237715817|ref|ZP_04546298.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229443464|gb|EEO49255.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1360 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE +L+++DI+MP++DGI Sbjct: 1108 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGGEGERKAIEENPNLIISDIMMPKVDGI 1166 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1224 >gi|291087261|ref|ZP_06345880.2| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|313115944|ref|ZP_07801371.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|291075611|gb|EFE12975.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|310621708|gb|EFQ05236.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|218528555|ref|YP_002419371.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520858|gb|ACK81443.1| histidine kinase [Methylobacterium chloromethanicum CM4] Length = 632 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 9/116 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ F ++ L GY V NN A ++ + F ++ +D+VMP M+G+ Sbjct: 509 VLVVEDNAEVGTFAVQTLTDLGYVPVLANNAEEALAELARDADRFDVVFSDVVMPGMNGL 568 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LARR E DL V+ +G++ V N ++L KP+ V +++RLL Sbjct: 569 DLARRIREEHHDLPVLLASGYSHVMAQ---NGTYGFELLHKPYS----VEQLSRLL 617 >gi|320159552|ref|YP_004172776.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319993405|dbj|BAJ62176.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 394 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 13/128 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++IL+ +D D+ R + +AL A G VV + A + L++ DI +P M Sbjct: 4 RRILVVDDARDVGRMVQEALRSAYKGVPVVYAPSAEEAMLETSTMAVDLMIVDIRLPGMS 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK------NAKVLSKPFHLRDLVNEV 114 G +L RR P+++V+ ITG L+PD N + A++LSKP + DL++ V Sbjct: 64 GFDLVRRVRARQPEMQVIMITG-----LSPDENLKQMSAEVGAARLLSKPISIADLLSAV 118 Query: 115 NRLLTIKN 122 ++ +K Sbjct: 119 EEVVGVKG 126 >gi|319641388|ref|ZP_07996081.1| hypothetical protein HMPREF9011_01678 [Bacteroides sp. 3_1_40A] gi|317387003|gb|EFV67889.1| hypothetical protein HMPREF9011_01678 [Bacteroides sp. 3_1_40A] Length = 1329 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+DD+R +LI K Y SC NG A +RE L+++DI+MPE+ G Sbjct: 1077 QRVLIVEDNDDLRNYLIDMF-KTDYYTQSCPNGKEALAIIREFNPVLVISDIMMPELGGD 1135 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 +L + + DL+ I AL + N + + ++KPF + L V + Sbjct: 1136 KL---CSTIKGDLETSHIPVILLTALGDEKNMLEGLAIGADAYITKPFSVGILKATVKNI 1192 Query: 118 LT 119 LT Sbjct: 1193 LT 1194 >gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L ++++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|265755672|ref|ZP_06090293.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234278|gb|EEZ19871.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1329 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+DD+R +LI K Y SC NG A +RE L+++DI+MPE+ G Sbjct: 1077 QRVLIVEDNDDLRNYLIDMF-KTDYYTQSCPNGKEALAIIREFNPVLVISDIMMPELGGD 1135 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 +L + + DL+ I AL + N + + ++KPF + L V + Sbjct: 1136 KL---CSTIKGDLETSHIPVILLTALGDEKNMLEGLAIGADAYITKPFSVGILKATVKNI 1192 Query: 118 LT 119 LT Sbjct: 1193 LT 1194 >gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + L + L GY V + +G DK R+ P L++ D+++PEM G E Sbjct: 7 RILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMSGEE 66 Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 + RR E LDPDL ++ +T A D A +A ++KPF+ +L+ + Sbjct: 67 VCRRLREGLDPDLPIIILTAKDATE---DKIAGLDAGADDYITKPFNFEELLARIR 119 >gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1044 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 41/68 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD+ + F+ K L K G+ VV NNG A D +E+ F +L DI MP M G+E Sbjct: 865 ILLAEDDNLNQLFMKKMLEKQGHNVVLANNGQEAVDLFQEQNFDCILMDIQMPGMTGVEA 924 Query: 65 ARRATELD 72 +R ++ Sbjct: 925 TQRIRSME 932 >gi|16611832|gb|AAL27375.1|AF426171_6 HydG [Yersinia pestis] Length = 463 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD +I+AL K GY+ +NG A + +E PF L+LTD+ M EMDGIE Sbjct: 17 ILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDGIEA 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + +P + ++ +T ++ V ++ L+KP Sbjct: 77 LKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPL 117 >gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299] gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115] gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300] gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224] gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948] gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937] gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299] gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115] gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300] gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224] gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948] gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937] gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] Length = 247 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 7 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 67 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 123 >gi|331008765|gb|EGH88821.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 445 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPF---HLRDLVN 112 EL + P + V IT L+ +NA K ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHG--NLDTATNALKAGAFDFVTKPVDLGRLRELVN 117 >gi|313202560|ref|YP_004041217.1| integral membrane sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] gi|312441876|gb|ADQ78232.1| integral membrane sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] Length = 1346 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ ED+ ++ + ++ L + + V S NG A + V E P L+++D++MPEMDG Sbjct: 1094 NYNILVVEDNRELNQIIVNHL-ENRFTVYSAYNGNQALNSVNEHPIDLIISDVMMPEMDG 1152 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL + ++ + ++ +T + D NA +A + KPF L+ L VN L+ Sbjct: 1153 LELCKTLKSDITTSHIDILLLTAKISTDDQIDYFNAGADA-YMPKPFDLKVLEARVNNLI 1211 Query: 119 T 119 + Sbjct: 1212 S 1212 >gi|310778073|ref|YP_003966406.1| multi-sensor hybrid histidine kinase [Ilyobacter polytropus DSM 2926] gi|309747396|gb|ADO82058.1| multi-sensor hybrid histidine kinase [Ilyobacter polytropus DSM 2926] Length = 741 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 55/86 (63%), Gaps = 4/86 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS---AYDKVREEPFSLLLTDIVMPE 58 N+K+L+ +DD+ + L K L GY+ S +G +D ++ F +++TD+ MPE Sbjct: 623 NEKVLVVDDDEFIAEMLEKGLVDLGYKAESMTDGIEILKKFDYIKNN-FKIVITDLTMPE 681 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 ++GI+LA++ E +P++KV+ +T ++ Sbjct: 682 INGIQLAKKIKENNPEIKVILMTAYS 707 >gi|78223125|ref|YP_384872.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194380|gb|ABB32147.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 650 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 N+ IL+ ED+ + L + GYEV+ S + AS L+L+D++MPE Sbjct: 526 NETILVIEDEIGVLNLTAHTLKRNGYEVLQASSPSEASRIFSTNHHRIDLVLSDVIMPEK 585 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G L R E PDLK++F++G+ ++ ++A ++KPF LV V +L Sbjct: 586 NGPALVREFREKLPDLKILFMSGYTDDTISSPQIIDEHAAFINKPFTPDVLVERVRDVL 644 >gi|323974204|gb|EGB69336.1| sigma-54 interaction domain-containing protein [Escherichia coli TW10509] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] Length = 234 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|319940603|ref|ZP_08014946.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis 3_1_45B] gi|319805969|gb|EFW02727.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis 3_1_45B] Length = 241 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 IL+ +D+ +RR ++ L +AGY+V+S +G A + + P +L++ D++MPEMDG Sbjct: 8 ILVVDDESMIRRLVLANLERAGYDVMSAADGIRALEVYAKAPVKPNLVILDVMMPEMDGF 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ARR E D+ V+F+T A + KPF + +L+ + +L Sbjct: 68 ECARRLRE-KKDVPVIFMTAKTDSASKLRGFDLGADDYVCKPFSMEELLARIRAIL 122 >gi|302062958|ref|ZP_07254499.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] Length = 649 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 2/107 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + I++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 539 RTIMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALRILESDARIDLLVTDVGLPGGMN 598 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 G +LA A + PDLKV+FITG+A A+ + + VL+KPF + Sbjct: 599 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWVLTKPFTM 645 >gi|301047740|ref|ZP_07194798.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300300385|gb|EFJ56770.1| response regulator receiver domain protein [Escherichia coli MS 185-1] Length = 418 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSV 89 >gi|224540566|ref|ZP_03681105.1| hypothetical protein BACCELL_05480 [Bacteroides cellulosilyticus DSM 14838] gi|224517816|gb|EEF86921.1| hypothetical protein BACCELL_05480 [Bacteroides cellulosilyticus DSM 14838] Length = 1337 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 9/121 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D++R +L L Y + C++G A + V+E +++++DI+MPEM G E Sbjct: 1078 KILIVEDNDELREYLRNTLSD-DYNIQVCSDGKQALEIVKEYMPNMIISDIMMPEMRGDE 1136 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L L D++ I ALN D N + K + KPF++ L ++ +L Sbjct: 1137 LCH---VLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATISNIL 1193 Query: 119 T 119 T Sbjct: 1194 T 1194 >gi|229918640|ref|YP_002887286.1| response regulator receiver protein [Exiguobacterium sp. AT1b] gi|229470069|gb|ACQ71841.1| response regulator receiver protein [Exiguobacterium sp. AT1b] Length = 121 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ K+L+ +D MR + L K GY+VV NGA A K RE L+ DI MPEM Sbjct: 1 MSAKVLVVDDAAFMRMMIKDILTKNGYDVVGEAENGADAVAKYRELTPDLVTLDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ + D + K++ + A+ D+ + KPF+ ++ V++ + Sbjct: 61 DGLAALKEIRSFDSNAKIIMCSAMGQQAMVIDAIQAGAKDFIVKPFNAERVIEAVSKTV 119 >gi|153834162|ref|ZP_01986829.1| two-component response regulator [Vibrio harveyi HY01] gi|148869532|gb|EDL68530.1| two-component response regulator [Vibrio harveyi HY01] Length = 469 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKSNAVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P++ V+ +T +A + + ++KPF L+N V+R IK Sbjct: 63 LALLRNIKQNWPNMPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPIK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|108807081|ref|YP_650997.1| helix-turn-helix, Fis-type [Yersinia pestis Antiqua] gi|108812984|ref|YP_648751.1| helix-turn-helix, Fis-type [Yersinia pestis Nepal516] gi|108776632|gb|ABG19151.1| Helix-turn-helix, Fis-type [Yersinia pestis Nepal516] gi|108778994|gb|ABG13052.1| Helix-turn-helix, Fis-type [Yersinia pestis Antiqua] Length = 463 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD +I+AL K GY+ +NG A + +E PF L+LTD+ M EMDGIE Sbjct: 17 ILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDGIEA 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + +P + ++ +T ++ V ++ L+KP Sbjct: 77 LKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPL 117 >gi|95931140|ref|ZP_01313865.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132830|gb|EAT14504.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 454 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ ++R + L G++V + +GA+A D V EE L+L DI MP MDGI Sbjct: 2 KHILVVDDERNIRESITGILQDEGFQVTTSCDGATALDAVTEEKPDLVLLDIWMPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E + DL+V+ ++G A + + + KP L L+ ++ L + Sbjct: 62 ETLTQIRNQYDDLQVIMMSGHATIETAVTATKLGAYDFIEKPLSLEKLLVCIHNALKV 119 >gi|331685747|ref|ZP_08386329.1| transcriptional regulatory protein ZraR [Escherichia coli H299] gi|331077057|gb|EGI48273.1| transcriptional regulatory protein ZraR [Escherichia coli H299] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|288556814|ref|YP_003428749.1| modulation of CheA activity in response to attractants (chemotaxis protein) [Bacillus pseudofirmus OF4] gi|288547974|gb|ADC51857.1| modulation of CheA activity in response to attractants (chemotaxis protein) [Bacillus pseudofirmus OF4] Length = 299 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 9/92 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREE-------PFSLLLTDI 54 ++I++AED +R+ L L +AGYE +S NG A+D + E P L++TDI Sbjct: 174 KRIMIAEDSAILRKLLSDTLKEAGYEKLSFYENGRQAWDVLEEYKQSDGDLPVDLVITDI 233 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAV 86 MP+MDG L RR + DP LK + + F+++ Sbjct: 234 EMPQMDGHHLTRRIKQ-DPVLKQLPVLIFSSL 264 >gi|297568628|ref|YP_003689972.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924543|gb|ADH85353.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 460 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 46/88 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ +R+ L G V S G + E F ++L D MPE+D Sbjct: 1 MEGRILIIDDEASIRKGFGLLLTSEGLTVASAGGGPEGLALLERESFDIVLLDFAMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVAL 88 G+E+ RR L+ D V+ ITG+ VAL Sbjct: 61 GLEVLRRIKRLEQDPMVIMITGYDEVAL 88 >gi|238063370|ref|ZP_04608079.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. ATCC 39149] gi|237885181|gb|EEP74009.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. ATCC 39149] Length = 1347 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ D+R + + L + +EVV+ +G A + E PF L+LTD++MP +DG Sbjct: 646 RILLADDNADLREHVARLLCPS-WEVVAVPDGVEALRRAMETPFDLVLTDVMMPRLDGFG 704 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + ++ ++ A A A L+KPF ++L+ V Sbjct: 705 LVTALRADPRTRHVPIVLLSARAGSAEAVAGLAVGADDYLTKPFSSQELIARV 757 >gi|221209940|ref|ZP_03582921.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans CGD1] gi|221170628|gb|EEE03094.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans CGD1] Length = 588 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ ED+ D+R I+ L + GY+V+S +G +A ++ + F LL TD+VMP + Sbjct: 462 ETILVVEDNCDVRLAAIEMLARLGYKVLSAQDGDAALRLIQSGQCFDLLFTDVVMPGAVR 521 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR A+ V+F +G+ + D + ++ KP+ L DL V L Sbjct: 522 SSELARIASAPPYHASVLFASGYTRDIIFHDGKLDEGVALIGKPYALDDLARAVRDAL 579 >gi|153813051|ref|ZP_01965719.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174] gi|160894161|ref|ZP_02074939.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50] gi|149830853|gb|EDM85943.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174] gi|156864194|gb|EDO57625.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50] Length = 236 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFFSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|119503661|ref|ZP_01625744.1| two-component response regulator [marine gamma proteobacterium HTCC2080] gi|119460723|gb|EAW41815.1| two-component response regulator [marine gamma proteobacterium HTCC2080] Length = 442 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD +R L + + GY+V++ NG A + E L+++D+ M EMDG E Sbjct: 5 QVLIVEDDAILRGALCQTMEYGGYQVLNARNGKDALAVMDRETVDLVISDVQMDEMDGTE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + +P L + +T +V S L KPF L+ V+R+ T Sbjct: 65 LLQVVRRREPTLPFVMMTAHGSVQHAVQSMRDGATDYLQKPFEANVLLELVSRMET 120 >gi|332139809|ref|YP_004425547.1| chemotaxis protein CheY [Alteromonas macleodii str. 'Deep ecotype'] gi|327549831|gb|AEA96549.1| chemotaxis protein CheY [Alteromonas macleodii str. 'Deep ecotype'] Length = 121 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ + L AGY V + +G A+DK + + F+ +LTD MP MD Sbjct: 1 MSKHILVVDDSVSIRQMVEMTLKGAGYTVTTAQDGQEAFDKCKSQQFNFVLTDQNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + R ++ +T A + A + KPF L++ R+L Sbjct: 61 GLTLIKNLRGLGAYSRTPIVMLTTEAGGDMKAKGKAAGATGWMVKPFDPNKLLDVTRRVL 120 >gi|332519639|ref|ZP_08396103.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044198|gb|EGI80392.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 234 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KILL EDD + L L YEVV NG ++K +++ F L + D++MP DG Sbjct: 5 QKKILLVEDDPNFGTVLRDYLMMNDYEVVHAKNGMEGFEKFKKDDFDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + D+ ++F+T A A+ D K KV L+KPF Sbjct: 65 FTLAKEIREKNADVPIIFLT---AKAMKED--VLKGYKVGADDYLNKPF 108 >gi|330876582|gb|EGH10731.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 660 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + I++ +D+ +R + + L GY + GASA + + LL+TD+ +P M+ Sbjct: 539 RTIMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALRVLESDARIDLLVTDVGLPGGMN 598 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PDLKV+FITG+A A+ + + +L+KPF + + + ++ Sbjct: 599 GRQLADAARIIRPDLKVLFITGYAENAIIGNGHLDPGMWMLTKPFTMEAFASRIYEMI 656 >gi|319790077|ref|YP_004151710.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermovibrio ammonificans HB-1] gi|317114579|gb|ADU97069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermovibrio ammonificans HB-1] Length = 452 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 4/115 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D+ +R L K L G+ V+ +NG A +RE+ + DI MP++DG+ Sbjct: 3 KILVADDEKSIRLVLKKYLTSKGHSVIEASNGEEALKAIREQKPDVAFIDIKMPKLDGLS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R E+ V+ +T + + + L+KPF ++ ++++L Sbjct: 63 LLKRVKEIP----VVILTAYGTMEYTVKAMELGAVDYLTKPFSFEEIEEVLSKIL 113 >gi|227885465|ref|ZP_04003270.1| transcriptional regulatory protein ZraR [Escherichia coli 83972] gi|227837539|gb|EEJ48005.1| transcriptional regulatory protein ZraR [Escherichia coli 83972] gi|307556147|gb|ADN48922.1| transcriptional regulatory protein [Escherichia coli ABU 83972] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSV 89 >gi|163849887|ref|YP_001637930.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661492|gb|ABY28859.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 1225 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%) Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIELARRATELDP 73 R +++ L + GY + +G S + VR LL+TD+ +P ++G +LA A L P Sbjct: 1118 RDLVVEVLRELGYRAIEAPDGPSGLEIVRSSARIDLLVTDVGLPGLNGRQLADHARTLRP 1177 Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L+V+F+TG+A A + ++++KPF + L + ++ + Sbjct: 1178 ELRVLFMTGYAENATFGGGPLDPDMQMITKPFPVERLAARIREMMEL 1224 >gi|124265777|ref|YP_001019781.1| chemotaxis signal transduction protein CheY [Methylibium petroleiphilum PM1] gi|124258552|gb|ABM93546.1| Chemotaxis signal transduction protein CheY [Methylibium petroleiphilum PM1] Length = 120 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL +D MR+ + L AGY+V +G AYDK + F L+LTD MP++DGI Sbjct: 2 HSILAVDDSASMRQMVSFTLKSAGYDVTEAVDGQDAYDKAAQRQFDLVLTDQNMPQLDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ E P K ++ +T ++ + A + KPF L+ + +++ Sbjct: 62 GLTKKLRE-HPSFKATPILILTTESSDQMKQAGRAAGATGWMVKPFDPAKLLEVIKKVI 119 >gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1035 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + ++ L K GY NG D V+ +P+ ++L D+ MPEMDGI Sbjct: 909 RILVAEDNKVNQMVALRILEKLGYRGDIAANGLEVLDAVQRQPYDVILMDMQMPEMDGIT 968 Query: 64 LARRATELDPDLKV--MFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 R T+L LK I A A+ D +A + +SKP L +LV + + Sbjct: 969 ATREVTQLFQGLKKPRPRIIAMTANAMESDRQLCLDAGMDDYVSKPIRLEELVRALRQ 1026 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60 N+++L+ +D+ R+ L + K + + +G SA ++++ + L + D+ MPEMD Sbjct: 766 NRRVLIVDDNATNRQILALQIKKWKMQPLVAESGPSALALLQQQGWVDLAILDLQMPEMD 825 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ LAR+ +L ++ +T +S + ++SKP L N +N L Sbjct: 826 GVTLARQIRAAYGELPLILLTSLGNTL--TESEKALFSSLISKPVKQSTLYNALNSLFCE 883 Query: 121 K 121 K Sbjct: 884 K 884 >gi|312961364|ref|ZP_07775869.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311285022|gb|EFQ63598.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 724 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + +++ EDD +R ++ L + GY + +A + + LL+TD+ +P M+G Sbjct: 600 ESVVVVEDDPAVRMLVVNVLDELGYTAHQAADSRTALPLLESDLRVDLLVTDVGLPGMNG 659 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + PDLKV+F+TG+A A +++KPF + L ++ ++ Sbjct: 660 RQLAEIARQHRPDLKVLFMTGYAETAAERQGFLEAGMDMVAKPFSIDLLATKIRSMI 716 >gi|302338131|ref|YP_003803337.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301635316|gb|ADK80743.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 308 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 63/112 (56%), Gaps = 1/112 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D++++ + L + + K GY ++ + +++E S++++D+ MPEM+ Sbjct: 1 MDHTILFVDDEENILKALGRLMRKTGYTCFFASSAKEGLEIIKKERLSVVVSDMRMPEMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLV 111 G+EL R A E+DP + ++G++ + + N ++KP+ DL+ Sbjct: 61 GVELVRAANEIDPVSVKIILSGYSDIDDIMSAVNGGHIHSYITKPWREADLM 112 >gi|300938770|ref|ZP_07153483.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300456280|gb|EFK19773.1| response regulator receiver domain protein [Escherichia coli MS 21-1] Length = 318 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|331660565|ref|ZP_08361498.1| transcriptional regulatory protein ZraR [Escherichia coli TA206] gi|222035715|emb|CAP78460.1| Transcriptional regulatory protein zraR [Escherichia coli LF82] gi|312948578|gb|ADR29405.1| transcriptional regulatory protein ZraR [Escherichia coli O83:H1 str. NRG 857C] gi|331052348|gb|EGI24386.1| transcriptional regulatory protein ZraR [Escherichia coli TA206] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSV 89 >gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 228 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L GY+V++ NG A +K ++ L++ D++MPEMDGIE Sbjct: 7 KILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKKYKPHLIILDVMMPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R E + DL IT A + A +A ++KP + L+++V LL Sbjct: 67 ACERIRE-ESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALL 123 >gi|158522710|ref|YP_001530580.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511536|gb|ABW68503.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1102 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + IL+ EDD + + + GY V++ A + V L++TD+VMPEM+ Sbjct: 981 ETILIVEDDPVLLEMGTIMVQRLGYSVMAAATPQEALEMVDTHGTAIDLMITDVVMPEMN 1040 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA + E+ P+++++F++G+ A + + + KPF L++L ++ +L Sbjct: 1041 GKYLADQIQEICPEIRLIFMSGYTANVIVHQGVLEEGIDFIQKPFSLQNLAAKIREVL 1098 >gi|115523213|ref|YP_780124.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] gi|115517160|gb|ABJ05144.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] Length = 121 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L +D MR + L KAG+EV +G A + F L++TD+ MP MD Sbjct: 1 MAKRVLAVDDSKTMRDMVTFTLKKAGFEVAEAEDGQRALAVLNTAKFDLIITDLNMPNMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L + RA + ++ +T A D A L KPF LV V R+ Sbjct: 61 GITLIKQVRAASSHRAVPILILTTETDGAKKADGKAAGATGWLVKPFSPEKLVELVQRV 119 >gi|108763603|ref|YP_632616.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108467483|gb|ABF92668.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1109 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 16/127 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +L +D+ D+ L + + Y V++ +G++A + +R+EP +L+TD MPEM Sbjct: 4 LRHTLLFVDDEADVLDILTRMFQRR-YRVLTARSGSAALEILRKEPVDVLITDQRMPEMT 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-----NAPKNAKVLSKPFHLRDLVNEVN 115 GIEL A D+ + +TG+ +PD N + + ++KP+ + DL Sbjct: 63 GIELVATARAEGFDVTALLLTGYT----HPDDIIAAINQGQVYRYITKPWDVNDL----- 113 Query: 116 RLLTIKN 122 L+T+KN Sbjct: 114 -LITVKN 119 >gi|91974766|ref|YP_567425.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] gi|91681222|gb|ABE37524.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1105 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 6/113 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---DKVREEPFSLLLTDIVMP- 57 + IL+ EDD +R ++ L GY +S N +A D E F LL TD+VMP Sbjct: 953 TETILVVEDDAMVRSYVNAQLKSLGYTALSVGNATAALSISDSGAE--FDLLFTDVVMPG 1010 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +G++LA ++ P LKV+F +G++ AL + + +LSKP+ DL Sbjct: 1011 PYNGVQLAAEMSKRRPGLKVLFTSGYSENALIYNDRLDPDILLLSKPYRRADL 1063 >gi|331649858|ref|ZP_08350936.1| transcriptional regulatory protein ZraR [Escherichia coli M605] gi|330908320|gb|EGH36839.1| response regulator of zinc sigma-54-dependent two-component system [Escherichia coli AA86] gi|331041324|gb|EGI13476.1| transcriptional regulatory protein ZraR [Escherichia coli M605] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|170680150|ref|YP_001746389.1| transcriptional regulatory protein ZraR [Escherichia coli SMS-3-5] gi|170517868|gb|ACB16046.1| response regulator ZraR [Escherichia coli SMS-3-5] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|154502608|ref|ZP_02039668.1| hypothetical protein RUMGNA_00421 [Ruminococcus gnavus ATCC 29149] gi|153796800|gb|EDN79220.1| hypothetical protein RUMGNA_00421 [Ruminococcus gnavus ATCC 29149] Length = 287 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 49/79 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ + + + L +G++ C + A+AY+++ + L+++DI+MPE+DG E Sbjct: 67 RILVVEDDEKLNQIVCTYLNDSGFQAKGCLSAAAAYEEMYHTVYQLIISDIMMPEIDGFE 126 Query: 64 LARRATELDPDLKVMFITG 82 A ++ + ++F++ Sbjct: 127 FAGTVRRINETIPILFMSA 145 >gi|158520884|ref|YP_001528754.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158509710|gb|ABW66677.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 905 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 56/116 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD+ R L + L + + NG K + + L++TD MPEM+G Sbjct: 784 KVLVVDDDEHQRLLLSEYLKADKHRPDTAANGIEGMRKFADGWYDLVITDRAMPEMNGDT 843 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LAR E P V+ +TGF + P VLSKP L L + V ++L+ Sbjct: 844 LARTIKEAAPGKPVIMVTGFGDMMDAAGEAPPAVDMVLSKPVSLDRLRHAVRQVLS 899 >gi|330989096|gb|EGH87199.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 461 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1311 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ D+R ++ + L G+ V + +G +A + + P L+LTD++MP +DG Sbjct: 641 RILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHPPHLVLTDVMMPRLDGFG 700 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R +A E + V+ ++ A + L KPF ++LV+ V L I Sbjct: 701 LLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARLEI 759 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+ILL ED D+R L L + G+EV + +G +++ + L D+ +P +DG Sbjct: 1164 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLALRPDVALIDVGLPGIDGY 1223 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E+AR RA L ++ +TG+ + L+KP ++ +L Sbjct: 1224 EVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1273 >gi|293413440|ref|ZP_06656100.1| transcriptional regulatory protein ZraR [Escherichia coli B354] gi|291468035|gb|EFF10534.1| transcriptional regulatory protein ZraR [Escherichia coli B354] gi|325499264|gb|EGC97123.1| transcriptional regulatory protein ZraR [Escherichia fergusonii ECD227] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] Length = 247 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 7 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 67 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 123 >gi|240139889|ref|YP_002964366.1| putative hybrid histidine kinase with PAS/PAC and response regulator receiver domains [Methylobacterium extorquens AM1] gi|240009863|gb|ACS41089.1| putative hybrid histidine kinase with PAS/PAC and response regulator receiver domains [Methylobacterium extorquens AM1] Length = 533 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + IL+ +D D+ L GY + +G A + + + P LL +D++MP M Sbjct: 409 TETILIVDDRADVAELARAILRDYGYGTLMARHGREALEILNDHPEIDLLFSDLIMPGGM 468 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ LAR A PDLK++ TG+A +L +L+KP+ +L+ V + Sbjct: 469 DGLTLAREARRRHPDLKILLTTGYAEASLERTGIERPEFDILNKPYRRAELIRRVRAAID 528 Query: 120 IKN 122 N Sbjct: 529 APN 531 >gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 224 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + + K L GY V NG A + V + LL+ DI+MPEMDG+ Sbjct: 2 KILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L E + + V+F+T L KPF +L+ V LL Sbjct: 62 LVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALL 116 >gi|212695187|ref|ZP_03303315.1| hypothetical protein BACDOR_04725 [Bacteroides dorei DSM 17855] gi|212662273|gb|EEB22847.1| hypothetical protein BACDOR_04725 [Bacteroides dorei DSM 17855] Length = 1277 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ ED+DD+R +LI K Y SC NG A +RE L+++DI+MPE+ G Sbjct: 1025 QRVLIVEDNDDLRNYLIDMF-KTDYYTQSCPNGKEALAIIREFNPVLVISDIMMPELGGD 1083 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 +L + + DL+ I AL + N + + ++KPF + L V + Sbjct: 1084 KL---CSTIKGDLETSHIPVILLTALGDEKNMLEGLAIGADAYITKPFSVGILKATVKNI 1140 Query: 118 LT 119 LT Sbjct: 1141 LT 1142 >gi|196231769|ref|ZP_03130626.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chthoniobacter flavus Ellin428] gi|196224241|gb|EDY18754.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chthoniobacter flavus Ellin428] Length = 885 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 + ILL +D+ ++R L +AGY+VV +G A + R L++TD VMP +D Sbjct: 763 ETILLVDDEPNIRGVAELILQQAGYQVVLAADGTQAIARYAERRSEIKLVITDAVMPFLD 822 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI L R LDPD+KV+ +G + + + A L+KP+ L+ +++ L Sbjct: 823 GIALTRALRILDPDIKVIGTSGNSDDQRSAEMKGLGLAAFLTKPYDKHTLLMTLHQAL 880 >gi|315294338|gb|EFU53689.1| response regulator receiver domain protein [Escherichia coli MS 153-1] Length = 420 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSV 89 >gi|302186968|ref|ZP_07263641.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae 642] Length = 461 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|302342590|ref|YP_003807119.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301639203|gb|ADK84525.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 213 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 6/83 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF---SLLLTDIVMPEMD 60 ++L+ ED+D ++ L LG GY V + NGA +RE L++TD+VMP M+ Sbjct: 94 RVLVVEDEDGLKDNLADLLGLEGYHVATAANGALG---LREHLIFRPELVITDVVMPVMN 150 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+E+ R D LK +FI+GF Sbjct: 151 GVEMIRHLRRRDAALKAIFISGF 173 >gi|302038750|ref|YP_003799072.1| hypothetical protein NIDE3461 [Candidatus Nitrospira defluvii] gi|300606814|emb|CBK43147.1| protein of unknown function, putative CheY-like response regulator [Candidatus Nitrospira defluvii] Length = 250 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+A+D++ R ++ L +AGY + + A A + + E + LLL D+ MP Sbjct: 1 MPQRILIADDEETFRESTVEILAEAGYACSAARDAAEA-ESLLENGYDLLLADVRMPGNA 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E + P+L V+ ITGF V +S L KP + DL V R L Sbjct: 60 HLEFLENVSRRHPELPVLVITGFPTVGTAIESFRLSIVDYLIKPVGVDDLKRAVERGL 117 >gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 7/113 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILL ED+ M F+ L GY++ + +G A +KV ++ + L+L DI++P ++G Sbjct: 3 NFRILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPNLNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 IE+ RR + + ++ +T + + L D+ A LSKPF + +L+ Sbjct: 63 IEVCRRIRQF-SHVPIIMLTAKSDIPDKVLGLDAGAN---DYLSKPFAIEELL 111 >gi|316935080|ref|YP_004110062.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602794|gb|ADU45329.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 928 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 ++ ILL ED++ +R F + L GY ++ +GA+A +VR PF LLLTDI+MP + Sbjct: 790 SETILLVEDEELVRNFALAQLRGLGYRTIAAADGAAALAEVRRGTPFDLLLTDIIMPGGL 849 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G ELA + P +KV++ +G+ A+ +LSKPF DL V L+ Sbjct: 850 NGRELADAVARIRP-VKVLYTSGYTENAIVHHGRLDPGVLLLSKPFRRADLARLVRAALS 908 >gi|257483682|ref|ZP_05637723.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012164|gb|EGH92220.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 461 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|256828842|ref|YP_003157570.1| nitrogen-specific signal transduction histidine kinase NtrB [Desulfomicrobium baculatum DSM 4028] gi|256578018|gb|ACU89154.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfomicrobium baculatum DSM 4028] Length = 1121 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 N+++ EDD+D + + L + GYEV S N A A + EE PF L++TD MP M Sbjct: 1000 NERLAFIEDDEDQLLLIPRVLEQLGYEVHSFQNPAEAVFTLCEEGLPFDLVITDFDMPGM 1059 Query: 60 DGIELARRATELDPDLKVMFITG 82 +G ++A E PDL V+ ++G Sbjct: 1060 NGFDVAGILQERRPDLPVIMVSG 1082 >gi|253732135|ref|ZP_04866300.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724090|gb|EES92819.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 188 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 61 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|146340437|ref|YP_001205485.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146193243|emb|CAL77259.1| putative sensor histidine kinase with a CHASE3 and a response regulator receiver domain; signal peptide [Bradyrhizobium sp. ORS278] Length = 749 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EM 59 + IL+ EDD +R F++ L GY + + A A V + PF LL TD++MP + Sbjct: 625 TETILVVEDDPLVRDFVLAQLQGLGYVTLVASQAAEALSIVAHDRPFDLLFTDVIMPGGV 684 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA P L+V++ +G+ A+ + + +L+KP+ +L V R L Sbjct: 685 SGRQLAETIMASRPGLRVLYTSGYTDNAIIENRQLAPDTLLLTKPYRRAELAQMVRRAL 743 >gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1562 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + + L K G + NGA A + V F L+L D+ MP MDG E Sbjct: 1234 ILLAEDNALNQEVAWQMLEKTGAALSLAANGAEAVEMVEAGSFDLVLMDLQMPVMDGFEA 1293 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R+ E PDL V+ +A + D N + A + LSKP L + R L Sbjct: 1294 TRKILERFPDLPVI---ALSAAVMEEDRNKSRQAGMRDHLSKPIESTSLYRTLARWL 1347 >gi|77458877|ref|YP_348383.1| histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77382880|gb|ABA74393.1| histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 556 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + L + GY V ++ A + E+ LL++D+ +P M+G Sbjct: 438 ETVLIVEDDPAVRVLVSAVLSELGYGFVEASDADGAVPILDSEQRIDLLISDVGLPGMNG 497 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + PDLKV+FITG+A A ++++KPF L +V ++ Sbjct: 498 RQLAEIGRQYRPDLKVLFITGYAEHAAVRGGFLDPGMQMITKPFTFDLLTAKVREMI 554 >gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus 132] gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754] gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus MR1] gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796] gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus] gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus] gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus subsp. aureus TW20] gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus aureus 04-02981] gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754] gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796] gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED133] gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus T0131] gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21189] gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21172] gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21193] Length = 241 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 61 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|302341485|ref|YP_003806014.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301638098|gb|ADK83420.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 143 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 58/104 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + + + L G+ V + NG A K+ E + ++ D++MPE+DG+E Sbjct: 5 RILIVDDEKEFLDTVSERLSNRGFSVDAAQNGVEALGKIDEVAYDAIVLDLMMPELDGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +RA + PDL+V+ ++G A++ ++ L KP +L Sbjct: 65 TLKRALQKKPDLQVILLSGQASLEKGVEAMKLGAMDFLEKPANL 108 >gi|301061357|ref|ZP_07202137.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300444534|gb|EFK08519.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 492 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R + L GYE+ + NG+ A + + E +LL D+ MP M G E+ Sbjct: 7 VLVVDDEKVVRDGCRRVLSGRGYEITTAENGSQALEILGAEHIDILLLDLKMPVMSGEEV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R + PD+ V+ ITG V + ++KPF + + + R Sbjct: 67 LERTRDTHPDIPVIVITGHGTVDTAVECMKKGAYDFITKPFQIDQFLLTIER 118 >gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144] gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144] gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis FRI909] Length = 241 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E+ +G AY+ E ++ +L D+++PEMD Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|150396309|ref|YP_001326776.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Sinorhizobium medicae WSM419] gi|150027824|gb|ABR59941.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Sinorhizobium medicae WSM419] Length = 484 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 >gi|328954100|ref|YP_004371434.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328454424|gb|AEB10253.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 477 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD+ + FL + + GY V +C++G +A +++ E F L+L D MP ++G+ Sbjct: 2 ENILIVDDDEGLIHFLHRFFVRQGYGVCACSSGQAALERIAGEQFDLILLDYKMPGLNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN------EVNR 116 + R L V+ +T + ++ L KPF +L EVNR Sbjct: 62 DTLREVRRLQVKTPVIIMTAYGTTDTAIEAMKLGAYDYLLKPFDREELQRIAADALEVNR 121 Query: 117 LL 118 L+ Sbjct: 122 LM 123 >gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] Length = 243 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G+ V S +NG A + + L + DI+MP+MDGIEL Sbjct: 17 ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 77 CRRIRE-KYSLPIMFLSA 93 >gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 1514 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR + +K L + Y V + +G +A + ++++ LLLTDI+MP ++G+ Sbjct: 649 RILLADDNADMRDY-VKRLLQDHYLVETVADGVAALESIQQQRPDLLLTDIMMPRLNGLA 707 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + R++ DL ++ ++ A + K L KPF R+L+ V L + Sbjct: 708 LLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACLKM 766 >gi|163852555|ref|YP_001640598.1| histidine kinase [Methylobacterium extorquens PA1] gi|163664160|gb|ABY31527.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 533 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + IL+ +D D+ L GY + +G A + + + P LL +D++MP M Sbjct: 409 TETILIVDDRADVAELARAILRDYGYGTLMARHGREALEILNDHPEIDLLFSDLIMPGGM 468 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 DG+ LAR A PDLK++ TG+A +L +L+KP+ +L+ V Sbjct: 469 DGLTLAREARRRHPDLKILLTTGYAEASLERTGIERPEFDILNKPYRRAELIRRV 523 >gi|144898191|emb|CAM75055.1| Response regulator receiver [Magnetospirillum gryphiswaldense MSR-1] Length = 201 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ L L + GY V ++G A+D + + ++TDI MP MDG+EL Sbjct: 82 ILLVDDEVLAALMLADHLQQQGYAVDVAHDGQEAFDLCHQHVYDAVVTDIRMPRMDGMEL 141 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKN-AKVLSKPF 105 RR +L P V+ +G V N P + A+V+ KPF Sbjct: 142 IRRLYDLQPGTPVIVASGH--VRSGHAENFPDSVAQVIGKPF 181 >gi|320197100|gb|EFW71718.1| Response regulator of zinc sigma-54-dependent two-component system [Escherichia coli WV_060327] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|253579662|ref|ZP_04856931.1| response regulator receiver protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849163|gb|EES77124.1| response regulator receiver protein [Ruminococcus sp. 5_1_39BFAA] Length = 530 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 40/52 (76%) Query: 32 CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 C NG SA D +++EP L+++DI MP++DGI ++R+A +++P +K++ I+ + Sbjct: 30 CYNGTSAIDAMKKEPVDLIISDIEMPDLDGISMSRQALDINPMVKIILISAY 81 >gi|218707623|ref|YP_002415142.1| transcriptional regulatory protein ZraR [Escherichia coli UMN026] gi|293407621|ref|ZP_06651539.1| transcriptional regulatory protein ZraR [Escherichia coli FVEC1412] gi|298383369|ref|ZP_06992961.1| two-component system [Escherichia coli FVEC1302] gi|300897581|ref|ZP_07115990.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|331665661|ref|ZP_08366557.1| transcriptional regulatory protein ZraR [Escherichia coli TA143] gi|218434720|emb|CAR15652.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator ; sigma54 interaction protein [Escherichia coli UMN026] gi|291425389|gb|EFE98429.1| transcriptional regulatory protein ZraR [Escherichia coli FVEC1412] gi|298276248|gb|EFI17769.1| two-component system [Escherichia coli FVEC1302] gi|300358657|gb|EFJ74527.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|331057179|gb|EGI29171.1| transcriptional regulatory protein ZraR [Escherichia coli TA143] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|150002978|ref|YP_001297722.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254883620|ref|ZP_05256330.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|319642312|ref|ZP_07996970.1| two-component system response regulator [Bacteroides sp. 3_1_40A] gi|149931402|gb|ABR38100.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254836413|gb|EET16722.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|317386035|gb|EFV66956.1| two-component system response regulator [Bacteroides sp. 3_1_40A] Length = 460 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L LGK G+ V + ++ A A ++ +P+ L+L+D+ +P+ D Sbjct: 1 MPHSILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLPDQD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI L E ++ ++ +TG+A + + + +SKP +L+ ++N L Sbjct: 61 GIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEALQN 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|115377380|ref|ZP_01464585.1| sensory box histidine kinase/response regulator, putative [Stigmatella aurantiaca DW4/3-1] gi|115365591|gb|EAU64621.1| sensory box histidine kinase/response regulator, putative [Stigmatella aurantiaca DW4/3-1] Length = 1222 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 + ++L+ +DDD R L AL G V +GA+A ++R+ P+ +L DI +P M Sbjct: 1100 LQGRVLVIDDDDSSRDALTIALESLGMSVEGVASGAAALKQLRKGTPWDAVLCDIGLPGM 1159 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHL 107 G +A+R +L P L + ITG A P P N + +L+KP L Sbjct: 1160 RGWTVAQRMNKLAPQLPLYLITGSPGEA-PPKGTRPSNVRALLAKPLAL 1207 >gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1686 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + ++ L +AG V N+G A ++V ++ F +L D MP +DG E Sbjct: 1345 EVLLVEDNQLNQELAVELLRQAGINVTVANHGLEAIERVEQQYFDCVLMDCQMPVLDGYE 1404 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR EL P + I A A++ D + A ++KP H++DL + R +T Sbjct: 1405 ATRRIREL-PQFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMARWITP 1463 Query: 121 K 121 K Sbjct: 1464 K 1464 >gi|322387045|ref|ZP_08060657.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321142129|gb|EFX37622.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 134 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 VN ++ Sbjct: 114 VNNIM 118 >gi|317010045|gb|ADU80625.1| response regulator [Helicobacter pylori India7] Length = 213 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL + + V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKCIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037] Length = 232 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D + KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIVKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|283852522|ref|ZP_06369790.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283572130|gb|EFC20122.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 671 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ R F ++AL K G+ V + +G A + + PF L+L DI MP ++G+E Sbjct: 550 RILLAEDEPVNRIFTVRALQKLGHSVETAADGREALLLLGQSPFDLVLMDIQMPRLNGLE 609 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 R R+ ++ + + A A++ D +A + ++KPF +LV + R L Sbjct: 610 ATRMIRSGQVPGIATTIPVVALTAYAMDSDRERGLDAGMDEYVTKPFEPWELVEAMERAL 669 >gi|254562311|ref|YP_003069406.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254269589|emb|CAX25559.1| putative hybrid histidine kinase with PAS/PAC and response regulator receiver domains [Methylobacterium extorquens DM4] Length = 533 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + IL+ +D D+ L GY + +G A + + + P LL +D++MP M Sbjct: 409 TETILIVDDRADVAELARAILRDYGYGTLMARHGREALEILNDHPEIDLLFSDLIMPGGM 468 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 DG+ LAR A PDLK++ TG+A +L +L+KP+ +L+ V Sbjct: 469 DGLTLAREARRRHPDLKILLTTGYAEASLERTGIERPEFDILNKPYRRAELIRRV 523 >gi|237726641|ref|ZP_04557122.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435167|gb|EEO45244.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1350 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+D+RR++ + L + + SCN G A + + + L+++D++MPEMDG+ Sbjct: 1091 KVLVVEDDEDIRRYICRELASDYHTLESCN-GKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 LARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R+ + L+ + V+ +T N + ++KPFH+ L Sbjct: 1150 LCRKIKQNVNLN-HIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEIL 1198 >gi|239623923|ref|ZP_04666954.1| sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239521954|gb|EEQ61820.1| sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 227 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED++DMR L L K GY V S +GA A + L++ D+ +P MDG+E Sbjct: 2 RLLIIEDEEDMREALCYGLRKLGYAVDSSGDGAEAAQLCYINHYDLVVLDLNLPGMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + KV+ ++ + + + L+KPFH ++L + LL Sbjct: 62 VLRHIQSQENPTKVLILSARSELTDKIAGLDGGASDYLTKPFHFQELEARIRMLL 116 >gi|224370167|ref|YP_002604331.1| PhoR [Desulfobacterium autotrophicum HRM2] gi|223692884|gb|ACN16167.1| PhoR [Desulfobacterium autotrophicum HRM2] Length = 505 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI++ +D+ +R + L + GYEV G + + P S+ L D+ MP MDG+ Sbjct: 7 EKIVVIDDESSLREGAQRILSRMGYEVFLAERGEEGLNIINSHPISIALLDMKMPGMDGM 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRLLT 119 E+ + ++ + V+ ITG+A V + + KP+ LR ++ N L Sbjct: 67 EVLKEIMAMNRGIIVIVITGYATVETAIQAMKMGAYDFIPKPYEPDQLRMVIKRANETLR 126 Query: 120 IK 121 +K Sbjct: 127 LK 128 >gi|215489336|ref|YP_002331767.1| transcriptional regulatory protein ZraR [Escherichia coli O127:H6 str. E2348/69] gi|312965342|ref|ZP_07779575.1| transcriptional regulatory protein zraR [Escherichia coli 2362-75] gi|215267408|emb|CAS11859.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma 54 interaction protein [Escherichia coli O127:H6 str. E2348/69] gi|312290016|gb|EFR17903.1| transcriptional regulatory protein zraR [Escherichia coli 2362-75] gi|323190138|gb|EFZ75416.1| transcriptional regulatory protein zraR [Escherichia coli RN587/1] Length = 441 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1358 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ D+R ++ + L G+ V + +G +A + + P L+LTD++MP +DG Sbjct: 688 RILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHPPHLVLTDVMMPRLDGFG 747 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R +A E + V+ ++ A + L KPF ++LV+ V L I Sbjct: 748 LLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARLEI 806 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+ILL ED D+R L L + G+EV + +G +++ + L D+ +P +DG Sbjct: 1211 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLALRPDVALIDVGLPGIDGY 1270 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E+AR RA L ++ +TG+ + L+KP ++ +L Sbjct: 1271 EVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1320 >gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU144] gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU045] gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU028] Length = 241 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E+ +G AY+ E ++ +L D+++PEMD Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|284924096|emb|CBG37195.1| two-component system response regulator [Escherichia coli 042] Length = 441 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSV 89 >gi|281181068|dbj|BAI57398.1| two-component regulator [Escherichia coli SE15] Length = 441 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|260909575|ref|ZP_05916277.1| response regulator [Prevotella sp. oral taxon 472 str. F0295] gi|260636311|gb|EEX54299.1| response regulator [Prevotella sp. oral taxon 472 str. F0295] Length = 519 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL A+D+ ++ + I L K GYEVV+ +NG A D+ + F L++ D +MP + G Sbjct: 3 NGLILWADDEIELLKAHIIFLEKKGYEVVTVSNGMDALDQCTQRNFDLIMLDEMMPGLSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E +R E+ P V+ T + + K A L KP VN LLT+K Sbjct: 63 LETLQRIKEIQPATPVVMCTKSEEENIMEQAIGSKIADYLIKP------VNPSQILLTLK 116 >gi|260170267|ref|ZP_05756679.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] gi|315918629|ref|ZP_07914869.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692504|gb|EFS29339.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1329 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+D++R +L+ +L Y V +C NG A ++E L+L+DI+MPEM G Sbjct: 1063 QRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEALIIIKEFWPELVLSDIMMPEMGGD 1121 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I AL ++N + L KPF ++ L + L Sbjct: 1122 EL---CVAIKSDIETSHIPVLLLTALGDENNILDGLSIGADEYLIKPFSVKILRANIANL 1178 Query: 118 L 118 L Sbjct: 1179 L 1179 >gi|255279876|ref|ZP_05344431.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] gi|255269649|gb|EET62854.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] Length = 246 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDG 61 KILL EDD ++ R + + L K GY V C++G +A Y + + + + D ++P +DG Sbjct: 20 KILLIEDDRELCRSIRRELEKNGYMVECCSDGETAMFYALNTDYGYDIAIVDRMLPVVDG 79 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + R + + V+ ITG +A+ D L KPFH+R+L+ V L Sbjct: 80 LTIIRAMRRKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELLARVRAL 135 >gi|89094274|ref|ZP_01167216.1| chemotaxis response regulator [Oceanospirillum sp. MED92] gi|89081529|gb|EAR60759.1| chemotaxis response regulator [Oceanospirillum sp. MED92] Length = 120 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +R + L + GY+VV NG A K + F L+LTD+ MP MDGI L Sbjct: 4 ILVVDDSASLRNMVTFTLKQEGYQVVEAGNGQEALAKAQGARFDLVLTDVNMPIMDGITL 63 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L P K ++ +T ++ + A L KPF+ L++ + R++ Sbjct: 64 CAELRKL-PAFKFTPILVLTTESSADMKQRGKAAGATGWLVKPFNPEKLISTIKRVV 119 >gi|116624255|ref|YP_826411.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227417|gb|ABJ86126.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 505 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---DKVREEPFSLLLTDIVMPE 58 ++ +L+ EDD+ +R + + L ++GY V+ + A D R LL+TD+VMP+ Sbjct: 376 SETVLVVEDDEMVRNLVRETLNRSGYRVLDADGPLEARRIADAYRGR-IHLLITDVVMPK 434 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G ELA + TE D+KV++++G+ A+ K + KPF +V +L Sbjct: 435 VSGRELAAQLTERRRDMKVLYMSGYTDSAIVNTGILQKEVAFVQKPFTPAAFTQKVREVL 494 >gi|312877820|ref|ZP_07737769.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor lactoaceticus 6A] gi|311795404|gb|EFR11784.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor lactoaceticus 6A] Length = 509 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 14/125 (11%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL ED+ MR+ +IK + + G+E+ NG A D ++ E +++TDI MP MD Sbjct: 3 KILLVEDEIFMRKGIIKLIDWERLGFEIAYEAGNGQEALDILKSEKVDVIITDIKMPVMD 62 Query: 61 GIELARRAT-ELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIEL RR + E + ++ I+G FA A+ N L KP +L+ + Sbjct: 63 GIELIRRVSEEFESKPAIIIISGYNEFEFAKAAIKYGVN-----DYLLKPIDENELIQTL 117 Query: 115 NRLLT 119 R+ T Sbjct: 118 ERIKT 122 >gi|306824908|ref|ZP_07458252.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433119|gb|EFM36091.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 245 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMKIIGQAENGRQAWELIQQQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|294777730|ref|ZP_06743178.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448409|gb|EFG16961.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1350 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+D+RR++ + L + + SCN G A + + + L+++D++MPEMDG+ Sbjct: 1091 KVLVVEDDEDIRRYICRELASDYHTLESCN-GKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 LARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R+ + L+ + V+ +T N + ++KPFH+ L Sbjct: 1150 LCRKIKQNVNLN-HIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEIL 1198 >gi|291536536|emb|CBL09648.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291538595|emb|CBL11706.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 215 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 53/98 (54%) Query: 20 KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 K L AGYEV +C +G A++ V E + L++ D+ +P MDG+E+ + + + + KV+ Sbjct: 7 KRLYDAGYEVDTCYDGEEAFESVLTENYDLIVLDLNLPGMDGMEILKELRQRNEETKVLI 66 Query: 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ +A + + KPFHL++L + L Sbjct: 67 LSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSL 104 >gi|265752154|ref|ZP_06087947.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236946|gb|EEZ22416.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1349 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+D+RR++ + L + + SCN G A + + + L+++D++MPEMDG+ Sbjct: 1090 KVLVVEDDEDIRRYICRELASDYHTLESCN-GKEALESIFNKTPDLVISDVMMPEMDGLT 1148 Query: 64 LARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R+ + L+ + V+ +T N + ++KPFH+ L Sbjct: 1149 LCRKIKQNVNLN-HIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEIL 1197 >gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781] gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763] gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719] gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781] gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763] gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719] gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] Length = 244 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 4 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 64 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 120 >gi|218551012|ref|YP_002384803.1| transcriptional regulatory protein ZraR [Escherichia fergusonii ATCC 35469] gi|218358553|emb|CAQ91201.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator ; sigma54 interaction protein [Escherichia fergusonii ATCC 35469] gi|324110916|gb|EGC04908.1| sigma-54 interaction domain-containing protein [Escherichia fergusonii B253] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 1514 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR + +K L + Y V + +G +A + ++++ LLLTDI+MP ++G+ Sbjct: 649 RILLADDNADMRDY-VKRLLQDHYLVETVADGVAALESIQQQRPDLLLTDIMMPRLNGLA 707 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + R++ DL ++ ++ A + K L KPF R+L+ V L + Sbjct: 708 LLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACLKM 766 >gi|163788577|ref|ZP_02183022.1| two-component system, transcriptional regulatory protein [Flavobacteriales bacterium ALC-1] gi|159875814|gb|EDP69873.1| two-component system, transcriptional regulatory protein [Flavobacteriales bacterium ALC-1] Length = 150 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L Y+VV NG ++K +++ + L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGTVLKDYLMMNDYDVVHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + D+ ++F+T A A+ D K KV L+KPF Sbjct: 65 FTLAKEIREKNTDVPIIFLT---AKAMKED--VLKGYKVGADDYLNKPF 108 >gi|149918143|ref|ZP_01906636.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149821148|gb|EDM80554.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 471 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +DD D R L L G E V+C A + F +++TD+ MP M Sbjct: 1 MTGRLLIIDDDVDARELLAANLELRGLEAVACPGAEQALALLEAAGFDIVITDVHMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL TE P V+ +TG A++ L + ++KP + L + + + L Sbjct: 61 GIELCELLTERHPHTPVLVMTGQASMELAIAALRAGAHDFVTKPIDVEGLAHRIAKAL 118 >gi|193067813|ref|ZP_03048779.1| response regulator ZraR [Escherichia coli E110019] gi|192958788|gb|EDV89225.1| response regulator ZraR [Escherichia coli E110019] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|329954099|ref|ZP_08295194.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328528076|gb|EGF55056.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1356 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +R L K Y++++ NG + VR E ++++D+VMP+M G Sbjct: 1093 DAKMLIVEDNESIREMLANIF-KPFYQILTAANGEEGWQLVRSEMPCIVVSDVVMPKMSG 1151 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + ++ + V+ +T AV LN + ++KPFH L++ N L+ Sbjct: 1152 TELCKLIKSDFNTCHIPVVLLTARTAVELNIEGLRIGADDYITKPFHTNLLISRCNNLV 1210 >gi|312891997|ref|ZP_07751498.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295494|gb|EFQ72662.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1392 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ +MR++L +LG A Y++ NG + K L+++DI MP MDGIEL Sbjct: 1136 VLIVEDNSEMRQYLADSLG-ASYKISEAANGREGWHKALALHPDLVVSDISMPYMDGIEL 1194 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 +R+ D + I A+A D A V L+KPFH L ++ LL + Sbjct: 1195 SRKLKS-DKRTSHIPIILLTAMASQQDQLAGLELGVSDYLTKPFHFEILNIKIKNLLHV 1252 >gi|227821861|ref|YP_002825831.1| response regulator for gln [Sinorhizobium fredii NGR234] gi|227340860|gb|ACP25078.1| response regulator for gln [Sinorhizobium fredii NGR234] Length = 484 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 >gi|134078587|emb|CAK49115.1| unnamed protein product [Aspergillus niger] Length = 677 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 ++ILL ED+ +R L + L +G++V +NG A D ++++ F +L D VMP MDG Sbjct: 553 RRILLVEDNVINKRILSRKLQTSGFQVSEASNGQEAVDAIQQQGRFDCVLMDQVMPIMDG 612 Query: 62 IELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +R +LD + + I G A A + A ++ KP+ + DL+ + +L Sbjct: 613 TTASRTIRQLDGPMAQVPILGVTANVRTAQKDEMLAAGMNDIIYKPYKMPDLIERIKQL 671 >gi|87120685|ref|ZP_01076578.1| probable two-component response regulator [Marinomonas sp. MED121] gi|86163913|gb|EAQ65185.1| probable two-component response regulator [Marinomonas sp. MED121] Length = 175 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 55/104 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN K+L+ +DDD + L +A+ + G V + NGA AY + +E F+ D+ + Sbjct: 1 MNTKLLIIDDDDVLTSTLKRAMERRGLLVSTAMNGAEAYALLEKESFTYATLDLKLEHES 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 G+ + + + PDLKV+ +TG+A++ ++ L KP Sbjct: 61 GLGILTQLLSIQPDLKVVVLTGYASIPTTVEAIKRGAQDYLCKP 104 >gi|332998847|gb|EGK18442.1| transcriptional regulatory protein zraR [Shigella flexneri K-272] gi|333014307|gb|EGK33661.1| transcriptional regulatory protein zraR [Shigella flexneri K-227] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 234 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEKQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249] gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249] Length = 232 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D + KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIVKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|299145583|ref|ZP_07038651.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298516074|gb|EFI39955.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 1330 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ ED+D++R +L+ +L Y V +C NG A ++E L+L+DI+MPEM G Sbjct: 1062 SRRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEALIIIKEYWPELVLSDIMMPEMRG 1120 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + D+++ I AL ++N + L KPF ++ L + Sbjct: 1121 DEL---CVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIAN 1177 Query: 117 LL 118 LL Sbjct: 1178 LL 1179 >gi|266619280|ref|ZP_06112215.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM 13479] gi|288869197|gb|EFD01496.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM 13479] Length = 227 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED++DMR L L K GY V + +GA A ++ + L++ D+ +P +DG+E Sbjct: 2 RLLIVEDEEDMREALCYGLRKRGYAVDAAGDGADAVEQCGINEYDLVVLDLNLPGLDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++ KV+ ++ + + + L+KPFH +L + LL Sbjct: 62 VLKHIRSMEKPAKVLILSARSELTDKIRGLDSGASDYLTKPFHFEELEARIRMLL 116 >gi|262273972|ref|ZP_06051784.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262221782|gb|EEY73095.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1112 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 8/113 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED + ++ L G E +NG A ++ + PF L+L D MPEMDG E Sbjct: 841 KVLIAEDHLVNQDLMVLVLNSLGCESTLADNGLQALEQHKANPFDLILMDCQMPEMDGFE 900 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVN 112 R + D ++ ++ +T A AL+ D+ A NA L+KPF LVN Sbjct: 901 ATRNIRDFDQNVPIIAVT---ANALSGDAERCLEAGMNAH-LAKPFTKDQLVN 949 >gi|268316364|ref|YP_003290083.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodothermus marinus DSM 4252] gi|262333898|gb|ACY47695.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodothermus marinus DSM 4252] Length = 472 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 6/115 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL +D+ + + + G + SC N A + +++E F L++TD MP+MDG+ Sbjct: 11 ILLVDDEHLLHTLFERLFTRHGLRLTSCYNALQAMEVLKKEADAFDLVITDFKMPDMDGL 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVN 115 EL + PDL+V+ IT A V A +N + + KPF +LV V Sbjct: 71 ELLAYIRQEHPDLQVIMITAHANV--QHAVRAMQNGAIDYIPKPFSTEELVERVQ 123 >gi|224540415|ref|ZP_03680954.1| hypothetical protein BACCELL_05328 [Bacteroides cellulosilyticus DSM 14838] gi|224517967|gb|EEF87072.1| hypothetical protein BACCELL_05328 [Bacteroides cellulosilyticus DSM 14838] Length = 1368 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+D++R ++ + L Y V+ NNG A + E+ L+L+DI+MP+MDG+EL Sbjct: 1114 VLLAEDNDEVRAYVKECLDPYFY-VLDVNNGKDALELSMEKYPDLILSDIMMPQMDGLEL 1172 Query: 65 ARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + DL+ V+ +T + V + + + KPF + L+ +N LL Sbjct: 1173 CSRVKQ---DLQLGHIPVVLMTAKSMVVHIKEGFSVGADDYIVKPFSMDVLICRINSLL 1228 >gi|238490202|ref|XP_002376338.1| sensory transduction histidine kinase, putative [Aspergillus flavus NRRL3357] gi|220696751|gb|EED53092.1| sensory transduction histidine kinase, putative [Aspergillus flavus NRRL3357] Length = 655 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ ED+ +R + + L G++V + +NG A D V++ F +L D MP MDG Sbjct: 535 RRVLVVEDNVINQRIVARKLESLGFQVTAVSNGREALDMVQQSTFDCILMDQAMPVMDGN 594 Query: 63 ELARRATELD----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L+ + V+ +T + A V+ KP+ +RDL + + +L+ Sbjct: 595 SATRAVRDLEKHGMAHIPVLGVTANVRAEQQAEMKAAGMDDVIHKPYKMRDLCDRIQQLM 654 >gi|161520683|ref|YP_001584110.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189353132|ref|YP_001948759.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|160344733|gb|ABX17818.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189337154|dbj|BAG46223.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] Length = 588 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ ED+ D+R I+ L + GY+V+S +G +A ++ + F LL TD+VMP + Sbjct: 462 ETILVVEDNCDVRLAAIEMLARLGYKVLSAQDGDAALRLIQSGQRFDLLFTDVVMPGAVR 521 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR A+ V+F +G+ + D + ++ KP+ L DL V L Sbjct: 522 SSELARIASAPPYHAGVLFASGYTRDIIFHDGKLDEGVALIGKPYALDDLARAVRDAL 579 >gi|110807854|ref|YP_691374.1| transcriptional regulatory protein ZraR [Shigella flexneri 5 str. 8401] gi|110617402|gb|ABF06069.1| Transcriptional Regulatory protein [Shigella flexneri 5 str. 8401] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|152393|gb|AAA26346.1| ntrC [Sinorhizobium meliloti] Length = 482 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 >gi|74314498|ref|YP_312917.1| transcriptional regulatory protein ZraR [Shigella sonnei Ss046] gi|73857975|gb|AAZ90682.1| response regulator of hydrogenase 3 activity (sensor HydH) [Shigella sonnei Ss046] gi|323167475|gb|EFZ53183.1| transcriptional regulatory protein zraR [Shigella sonnei 53G] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|16131834|ref|NP_418432.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [Escherichia coli str. K-12 substr. MG1655] gi|89110034|ref|AP_003814.1| fused DNA-binding response regulator in two-component regulatory system with ZraS [Escherichia coli str. K-12 substr. W3110] gi|170083465|ref|YP_001732785.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator; sigma54 interaction protein [Escherichia coli str. K-12 substr. DH10B] gi|238903061|ref|YP_002928857.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [Escherichia coli BW2952] gi|254039261|ref|ZP_04873310.1| transcriptional regulatory protein zraR [Escherichia sp. 1_1_43] gi|256026320|ref|ZP_05440185.1| transcriptional regulatory protein ZraR [Escherichia sp. 4_1_40B] gi|300947388|ref|ZP_07161581.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300954764|ref|ZP_07167194.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|301023375|ref|ZP_07187165.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301645739|ref|ZP_07245660.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307140696|ref|ZP_07500052.1| transcriptional regulatory protein ZraR [Escherichia coli H736] gi|312974209|ref|ZP_07788379.1| transcriptional regulatory protein zraR [Escherichia coli 1827-70] gi|331644741|ref|ZP_08345859.1| transcriptional regulatory protein ZraR [Escherichia coli H736] gi|417166|sp|P14375|ZRAR_ECOLI RecName: Full=Transcriptional regulatory protein zraR gi|396343|gb|AAC43102.1| ORF_o441 [Escherichia coli str. K-12 substr. MG1655] gi|1790437|gb|AAC76978.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [Escherichia coli str. K-12 substr. MG1655] gi|85676065|dbj|BAE77315.1| fused DNA-binding response regulator in two-component regulatory system with ZraS [Escherichia coli str. K12 substr. W3110] gi|169891300|gb|ACB05007.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator; sigma54 interaction protein [Escherichia coli str. K-12 substr. DH10B] gi|226838496|gb|EEH70526.1| transcriptional regulatory protein zraR [Escherichia sp. 1_1_43] gi|238861185|gb|ACR63183.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [Escherichia coli BW2952] gi|260451167|gb|ACX41589.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli DH1] gi|299880895|gb|EFI89106.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300318263|gb|EFJ68047.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300452992|gb|EFK16612.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|301075988|gb|EFK90794.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|310331376|gb|EFP98641.1| transcriptional regulatory protein zraR [Escherichia coli 1827-70] gi|315138561|dbj|BAJ45720.1| transcriptional regulatory protein ZraR [Escherichia coli DH1] gi|315617369|gb|EFU97975.1| transcriptional regulatory protein zraR [Escherichia coli 3431] gi|323933954|gb|EGB30428.1| sigma-54 interaction domain-containing protein [Escherichia coli E1520] gi|323938879|gb|EGB35099.1| sigma-54 interaction domain-containing protein [Escherichia coli E482] gi|331036041|gb|EGI08278.1| transcriptional regulatory protein ZraR [Escherichia coli H736] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|193066408|ref|ZP_03047455.1| response regulator ZraR [Escherichia coli E22] gi|194429958|ref|ZP_03062467.1| response regulator ZraR [Escherichia coli B171] gi|218556559|ref|YP_002389473.1| transcriptional regulatory protein ZraR [Escherichia coli IAI1] gi|260846804|ref|YP_003224582.1| fused DNA-binding response regulator ZraR in two-component regulatory system with ZraS: response regulator/sigma 54 interaction protein [Escherichia coli O103:H2 str. 12009] gi|293474312|ref|ZP_06664721.1| two-component system [Escherichia coli B088] gi|300819816|ref|ZP_07100003.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|192925932|gb|EDV80579.1| response regulator ZraR [Escherichia coli E22] gi|194411987|gb|EDX28300.1| response regulator ZraR [Escherichia coli B171] gi|218363328|emb|CAR00978.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator ; sigma54 interaction protein [Escherichia coli IAI1] gi|257761951|dbj|BAI33448.1| fused DNA-binding response regulator ZraR in two-component regulatory system with ZraS: response regulator/sigma 54 interaction protein [Escherichia coli O103:H2 str. 12009] gi|291321342|gb|EFE60783.1| two-component system [Escherichia coli B088] gi|300527637|gb|EFK48699.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|323161303|gb|EFZ47212.1| transcriptional regulatory protein zraR [Escherichia coli E128010] gi|323943607|gb|EGB39715.1| sigma-54 interaction domain-containing protein [Escherichia coli H120] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|157157738|ref|YP_001465500.1| transcriptional regulatory protein ZraR [Escherichia coli E24377A] gi|300925874|ref|ZP_07141717.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|301325713|ref|ZP_07219172.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|157079768|gb|ABV19476.1| response regulator ZraR [Escherichia coli E24377A] gi|300418064|gb|EFK01375.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300847502|gb|EFK75262.1| response regulator receiver domain protein [Escherichia coli MS 78-1] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 228 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|295110414|emb|CBL24367.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Ruminococcus obeum A2-162] Length = 507 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 6 LLAEDDDDMRRFLIKAL---GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L DD+ + R I AL G E++ NG A ++E+ +LL+DI MP MDGI Sbjct: 4 VLIVDDERIEREGIAALLQMGNYNLEILEAVNGKEALTILKEKKPEILLSDIRMPFMDGI 63 Query: 63 ELARRATELDPDLKVMFITGFA 84 EL R+A ++PD+ V+ +GF+ Sbjct: 64 ELTRQAKIMNPDMAVVIFSGFS 85 >gi|323528534|ref|YP_004230686.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385536|gb|ADX57626.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 720 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 20/130 (15%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D R +++ L + G+E+V G K E +L++TDIVM +MDG+ Sbjct: 510 RKVLVIDDVPMNRAVMVEFLSRLGFEIVEATGGRQGLAKTLSERPALIVTDIVMADMDGL 569 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----------VLSKPFHLRDLV 111 E RR + + GFA V + S +P A+ LSKP +L+ Sbjct: 570 EATRRLRQ---------VQGFAEVPVIATSASPSGAEEERSLKAGANAFLSKPVDFDELL 620 Query: 112 NEVNRLLTIK 121 ++ RLL ++ Sbjct: 621 AQIARLLDLE 630 >gi|254559125|ref|YP_003066220.1| sensor hybrid histidine kinase with multiple PAS/PAC, GAF and response regulator receiver domains [Methylobacterium extorquens DM4] gi|254266403|emb|CAX22167.1| putative sensor hybrid histidine kinase with multiple PAS/PAC, GAF and response regulator receiver domains [Methylobacterium extorquens DM4] Length = 1222 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%) Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIELARRATELDP 73 R +++ L + GY + +G S + VR LL+TD+ +P ++G +LA A L P Sbjct: 1115 RDLVVEVLRELGYRAIEAPDGPSGLEIVRSSARIDLLVTDVGLPGLNGRQLADHARTLRP 1174 Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L+V+F+TG+A A + ++++KPF + L + ++ + Sbjct: 1175 ELRVLFMTGYAENATFGGGPLDPDMQMITKPFPVERLAARIREMMEL 1221 >gi|253699912|ref|YP_003021101.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774762|gb|ACT17343.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1322 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEM 59 ++ ILLAEDD +RR + L + GY V+ +G+ K + SL+L D++MP Sbjct: 1200 SETILLAEDDSGVRRLVETLLEQYGYRVILAVDGSECVRKYLAHRDEISLILMDVIMPGK 1259 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E +DP +V++ +G+ A + ++ ++ KP L+ +V +L Sbjct: 1260 NGREAFEEIRAIDPKARVLYCSGYTADFMKNRGVFEESVDLIMKPVQPMTLLKKVREVL 1318 >gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 880 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED++ R ++ L + G+ V + NG A + + +E F L+L D+ MPE++G+E Sbjct: 754 RILLAEDNEINRFLALELLKERGHVVTAVENGRDALNMLAKERFDLVLMDVQMPEINGVE 813 Query: 64 LARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 RR + DP + ++ +T + AL D +A + LSKP L++L + Sbjct: 814 ATRRIRAGKVPDTDPRIPIVALTAY---ALKGDREKFMSAGMDDYLSKPLDLKELDRVLE 870 Query: 116 RL 117 RL Sbjct: 871 RL 872 >gi|330809932|ref|YP_004354394.1| Response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378040|gb|AEA69390.1| putative Response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 101 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 7/105 (6%) Query: 17 FLIKALGKAGYEVVSCNN--GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD 74 ++ L + Y+V+ + A A+ +P +L++TD+ +P MDG ELA++A + P Sbjct: 2 LIVDVLEELEYQVLEADGCEQALAFLHNDAQPIALMMTDVGLPVMDGRELAKQARAVRPQ 61 Query: 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L V+F +G+A + P+ V+ KPF + L ++V R+L+ Sbjct: 62 LPVLFASGYAE-----SIDVPEGMSVIGKPFSIDQLRDKVKRILS 101 >gi|320102939|ref|YP_004178530.1| integral membrane sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319750221|gb|ADV61981.1| integral membrane sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1051 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++LL ED D RR + +L + G V + NG ++V EP F L+L DI MP MD Sbjct: 922 RRVLLVEDTPDNRRVISYSLKRLGLAVETAENGELGVERVLAEPEGFDLVLMDISMPVMD 981 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G + + E L ++ +T A + L+KPF RDL + R+ T Sbjct: 982 GRQAVKILRERKFTLPIVALTAHALEEERERCLREGFDEYLAKPFSSRDLKTILERVWT 1040 >gi|297569478|ref|YP_003690822.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925393|gb|ADH86203.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 639 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + IL+AEDD +R+ L K Y V+ +G A K ++ + LLL D++MP ++ Sbjct: 518 ETILVAEDDAAIRQMTRSVLEKFNYRVIEAVDGEDAVAKFQQHRDEIDLLLFDLIMPRLN 577 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E P ++ +F +G+A L + + +L KP + DL+ +V ++L Sbjct: 578 GKEAYDAIAAQAPGVRCLFASGYAPDLLRRKVSLDRQTPLLCKPMSINDLLTKVRQVL 635 >gi|322419012|ref|YP_004198235.1| response regulator receiver protein [Geobacter sp. M18] gi|320125399|gb|ADW12959.1| response regulator receiver protein [Geobacter sp. M18] Length = 126 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+++ R L + L K G+ V S NG A + +RE+ +L++TDI MPEM+GI Sbjct: 6 KRILVVDDEENARIGLSRLLAKEGFLVDSVANGFEALNYLREQEVNLIVTDINMPEMNGI 65 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 + P V+ IT + V Sbjct: 66 TFLKELNRSYPASNVIMITAYGGV 89 >gi|225619217|ref|YP_002720443.1| response regulatory protein AtoC [Brachyspira hyodysenteriae WA1] gi|225214036|gb|ACN82770.1| response regulatory protein (atoC) [Brachyspira hyodysenteriae WA1] Length = 449 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++R + K+L GYEVV+ NG + V + L++TD+ MPE G E Sbjct: 3 KILVIDDEKNIRDGIKKSLEFEGYEVVTAENGEKGIEAVYKGGIDLVITDLKMPEKTGEE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + D + V+ +TG V + ++KPF+L ++ + R L KN Sbjct: 63 FLKDILDFDKHIPVIVLTGHGNVETAVEMMRLGAYDFMTKPFNLDKMLLIIARALESKN 121 >gi|254476854|ref|ZP_05090240.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Ruegeria sp. R11] gi|214031097|gb|EEB71932.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Ruegeria sp. R11] Length = 747 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEP---FSLLLTDIVMPEM 59 +LL ED+ +R F +AL GY V+ + SA D +R E+P + +TD+VMP M Sbjct: 631 VLLVEDEAPVRAFASRALRMRGYTVLEAD---SAEDALRTLEDPGLTVDVFVTDVVMPGM 687 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG R A + PD +V+F++G+A A + + N+ L KPF L L V+ L Sbjct: 688 DGPSWVREALKTRPDTRVVFVSGYAEGAFGEEEPSVPNSVFLPKPFSLNQLTETVHEQL 746 >gi|168178301|ref|ZP_02612965.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226948175|ref|YP_002803266.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182671135|gb|EDT83109.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226842363|gb|ACO85029.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 223 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R+ L K GY+ + +G SA D + E L+++DI+MP MDG Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + ++ ++ IT + + + KP + +++ V LL Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALL 117 >gi|91202962|emb|CAJ72601.1| strongly similar to sigma 54 response regulatory protein [Candidatus Kuenenia stuttgartiensis] Length = 448 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D+ R + K L + GY V C +G ++E + + + D+ MP M+GIE Sbjct: 7 ILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMPVMNGIET 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDL 110 ++ ++P +V+ +TG ++ NA + K+ L+KP L++L Sbjct: 67 LKKVKTIEPTTEVIILTGQGSI-----ENAVQAIKLGAYDYLTKPCQLKEL 112 >gi|323698405|ref|ZP_08110317.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458337|gb|EGB14202.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 884 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58 + IL EDD D + + L GY V + A +V + P F L++TD MP Sbjct: 759 LGAHILFVEDDADQLQTTPRLLETMGYVVDGQESPLQALRRVNDMPGEFDLVITDYDMPG 818 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G +LARR +DP+L ++ I+G A++ ++ P V+ KP+ +DL +N +L Sbjct: 819 MSGTQLARRLAVIDPNLPIILISGRED-AVSAAADLPNIRLVVIKPYDKQDLSRAINTVL 877 >gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 232 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D + KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIVKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|320200155|gb|EFW74744.1| Response regulator of zinc sigma-54-dependent two-component system [Escherichia coli EC4100B] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|315288330|gb|EFU47729.1| response regulator receiver domain protein [Escherichia coli MS 110-3] Length = 417 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I + L+P + V+ +T ++++ ++ L KP +L + + + L Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSIETAVEALKTGALDYLIKPLDFDNLQSTLEKAL 121 >gi|307728325|ref|YP_003905549.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. CCGE1003] gi|307582860|gb|ADN56258.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. CCGE1003] Length = 450 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG++VV + SA + + ++++DI +P G+E Sbjct: 7 QVLYIEDDELVRRASVQSLQLAGFDVVGHASAESAAKSISADFCGVIVSDIRLPGASGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 67 LLAQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAL 121 >gi|209921484|ref|YP_002295568.1| transcriptional regulatory protein ZraR [Escherichia coli SE11] gi|209914743|dbj|BAG79817.1| two-component regulator [Escherichia coli SE11] gi|324017342|gb|EGB86561.1| response regulator receiver domain protein [Escherichia coli MS 117-3] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|162449999|ref|YP_001612366.1| hypothetical protein sce1728 [Sorangium cellulosum 'So ce 56'] gi|161160581|emb|CAN91886.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 123 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDG 61 ++IL+ +DD D+R L + L + GY V S +G A +R +P L+L D++MP MDG Sbjct: 7 KRILVVDDDPDIRETLAELLQEEGYAVASAAHGGEALSALRTDPRPGLILLDLMMPIMDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R + DP+L + + +A + ++ A+ L KP +L L+ V + Sbjct: 67 WQF-RAEQKKDPELAAIPVVIISATGRDEFVSSLGAAQFLKKPINLEQLLAAVEQ 120 >gi|188583015|ref|YP_001926460.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179346513|gb|ACB81925.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 492 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + + + ++ + LL+TD+ +P M+ Sbjct: 372 ETVLIVDDEPSVRMLVTEVLEDLGYTAIEAADSVAGLKVLQSDVRIDLLVTDVGLPGGMN 431 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E PDLKV+FITG+A A+ + +VL+KPF L L + L+ Sbjct: 432 GRQMADAGRERRPDLKVLFITGYAENAVLGNGYLRPGMQVLTKPFVLETLATRIKDLI 489 >gi|90578579|ref|ZP_01234389.1| hypothetical sensor protein LuxN [Vibrio angustum S14] gi|90439412|gb|EAS64593.1| hypothetical sensor protein LuxN [Vibrio angustum S14] Length = 964 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +N K +L DD R L+KA L K G V+ +G A ++V++ L+ DI MP M Sbjct: 840 LNDKTVLVVDDMHANRLLVKAYLSKEGINVIQAASGYEAIEQVKKNNIDLIFMDIHMPGM 899 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +GIE A++ ELD ++ I+G + D + + ++ KP LV+ ++ L Sbjct: 900 NGIETAKQLKELDSTKPIIAISGEYGEKIVSDIHKVMDDYIV-KPIEKSTLVSLTSKWLI 958 Query: 120 I 120 I Sbjct: 959 I 959 >gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 232 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + + + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|146428|gb|AAA24004.1| hydG protein [Escherichia coli] Length = 437 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 54/109 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I + L+P + V+ +T +++V ++ L KP +L Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL 113 >gi|24115288|ref|NP_709798.1| transcriptional regulatory protein ZraR [Shigella flexneri 2a str. 301] gi|30064714|ref|NP_838885.1| transcriptional regulatory protein ZraR [Shigella flexneri 2a str. 2457T] gi|24054583|gb|AAN45505.1| response regulator of hydrogenase 3 activity (sensor HydH) [Shigella flexneri 2a str. 301] gi|30042974|gb|AAP18696.1| response regulator of hydrogenase 3 activity (sensor HydH) [Shigella flexneri 2a str. 2457T] gi|281603388|gb|ADA76372.1| Two component, sigma54 specific, transcriptional regulator, Fis family [Shigella flexneri 2002017] gi|313648655|gb|EFS13095.1| transcriptional regulatory protein zraR [Shigella flexneri 2a str. 2457T] gi|332749202|gb|EGJ79624.1| transcriptional regulatory protein zraR [Shigella flexneri 2747-71] gi|332751441|gb|EGJ81843.1| transcriptional regulatory protein zraR [Shigella flexneri 4343-70] gi|332762843|gb|EGJ93102.1| response regulator [Shigella flexneri 2930-71] gi|332765543|gb|EGJ95757.1| transcriptional regulatory protein zraR [Shigella flexneri K-671] gi|332998986|gb|EGK18576.1| transcriptional regulatory protein zraR [Shigella flexneri K-218] gi|333014344|gb|EGK33697.1| transcriptional regulatory protein zraR [Shigella flexneri K-304] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|15965212|ref|NP_385565.1| nitrogen assimilation regulatory protein [Sinorhizobium meliloti 1021] gi|307309226|ref|ZP_07588897.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Sinorhizobium meliloti BL225C] gi|307321969|ref|ZP_07601350.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Sinorhizobium meliloti AK83] gi|7404399|sp|P10577|NTRC_RHIME RecName: Full=Nitrogen assimilation regulatory protein gi|15074392|emb|CAC46038.1| Nitrogen assimilation regulatory protein [Sinorhizobium meliloti 1021] gi|306892393|gb|EFN23198.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Sinorhizobium meliloti AK83] gi|306900372|gb|EFN30988.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Sinorhizobium meliloti BL225C] Length = 484 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY+V +N A+ + + L++TD+VMP+ + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL V+ ++ ++ L KPF L +L+ + R L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 >gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 247 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 14/123 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D++ +R+ L L K GYEV S +G +AYD E+ F ++ D+++P MDG+ Sbjct: 2 KKVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPSMDGM 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ ++ + + ++ +T + L D ++KPF R++V + Sbjct: 62 DVCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADD-------YMTKPFSPREVVARMK 114 Query: 116 RLL 118 +L Sbjct: 115 AIL 117 >gi|315127502|ref|YP_004069505.1| response regulator in two-component regulatory system [Pseudoalteromonas sp. SM9913] gi|315016016|gb|ADT69354.1| response regulator in two-component regulatory system [Pseudoalteromonas sp. SM9913] Length = 449 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +DD + + L + GYEV +C++G +A ++ + F ++TD+ M EMDG+ Sbjct: 10 KVLLVDDDASLLQLLAIRIQSKGYEVTTCDSGMNALQLLKNQVFDAVITDLRMDEMDGMA 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS 92 L R+ P L V+ +T ++ PD+ Sbjct: 70 LHRQLQNRYPALPVIMMTAHGSI---PDA 95 >gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 233 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ EDD +R L + L GY V + G A + P L++ D+++P MD Sbjct: 1 MSARILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ RR P + V+ +T ++ V L ++ ++KPF L +LV V Sbjct: 61 GLEVCRRLRARHPAVYVLMLTARSSELDRVVGLEVGAD-----DYVTKPFSLNELVARVR 115 >gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 837 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AEDD +K LG G V NG A + +R EPF L+L D+ MP MDG+E Sbjct: 704 VLMAEDDHFSGILGVKLLGAFGASVRHVQNGRQALEALRSEPFDLVLMDVQMPVMDGVEA 763 Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLL 118 R D + + I + A++ D A NA V SKP +++L++ ++ +L Sbjct: 764 TVRIRHGDAGDCARNIPIIAMTSYAMDGDREKFLKAGMNAYV-SKPVDIKELMSAISEML 822 >gi|170755580|ref|YP_001780537.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120792|gb|ACA44628.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 223 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R+ L K GY+ + +G SA D + E L+++DI+MP MDG Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + ++ ++ IT + + + KP + +++ V LL Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALL 117 >gi|124008550|ref|ZP_01693242.1| transcriptional regulatory protein RprY [Microscilla marina ATCC 23134] gi|123985924|gb|EAY25781.1| transcriptional regulatory protein RprY [Microscilla marina ATCC 23134] Length = 230 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL EDD + +L Y V C NG A ++ +++ F L L D+++P+MD Sbjct: 1 MKAHILFVEDDASLALVTKDSLELRDYRVTHCANGQLALEQFQQDNFDLCLFDVMLPQMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 G LA + L+ ++ ++F+T A A+ D A ++KPF + ++V ++ Sbjct: 61 GFTLAEKVRTLNHEIPIIFLT---AKAMQEDKIAGLKLGADDYITKPFSIEEVVLKIEVF 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|317475905|ref|ZP_07935161.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907938|gb|EFV29636.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1362 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+D+++ +L L Y+V +C+NG AYD + + L+++D++MPEMDG+ Sbjct: 1111 RVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDTPDLVISDVMMPEMDGLT 1169 Query: 64 LARR 67 L R+ Sbjct: 1170 LCRK 1173 >gi|268609373|ref|ZP_06143100.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 48/78 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ R + L +G+E C + + AYD++ + L+++DI+MP++DG E Sbjct: 4 ILVVDDDKDLNRLVCGYLNDSGFETKGCLSVSEAYDEMYANLYDLIISDIMMPKIDGFEF 63 Query: 65 ARRATELDPDLKVMFITG 82 A L+ ++ ++F++ Sbjct: 64 AETVRRLNANIPILFLSA 81 >gi|256811052|ref|YP_003128421.1| response regulator receiver protein [Methanocaldococcus fervens AG86] gi|256794252|gb|ACV24921.1| response regulator receiver protein [Methanocaldococcus fervens AG86] Length = 124 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K L+ +D MR L + L G VV +NG A +K +E L+ DIVMPEMDG Sbjct: 6 KTLVVDDSAFMRNILKRILTPTGKFVVVGEASNGKEAIEKAKELKPDLITMDIVMPEMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I R ++ PD+KV+ T ++ + KPF + ++ E+N+L Sbjct: 66 ITATREIKQILPDVKVVMCTSVDQEKKVIEAIEAGAEGYIVKPFQAQKVLEELNKLF 122 >gi|254418026|ref|ZP_05031750.1| PAS fold family [Brevundimonas sp. BAL3] gi|196184203|gb|EDX79179.1| PAS fold family [Brevundimonas sp. BAL3] Length = 878 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MDGI 62 +L+ +D+ +R + + L + GY+ + + + + LL+TD+ +P M+G Sbjct: 760 VLIVDDEATIRMLVSEGLSELGYDFIEAEDARAGLAVLGSGRVIDLLITDVGLPGGMNGR 819 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +LA A P LKV+FITG+A ++ + ++L+KPF L+ L V +L+ Sbjct: 820 QLADAARARQPGLKVLFITGYAETSVLSGGDLEAGMRILTKPFELKQLAQRVETILS 876 >gi|197118871|ref|YP_002139298.1| response receiver sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088231|gb|ACH39502.1| response receiver sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 663 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEM 59 + IL+AEDD +R + L K GY+V+ NG ++ L+L DI+MP Sbjct: 544 TETILVAEDDPSVRNLVDMVLTKHGYQVILAENGQEVVERFTAHSSDIGLILMDIIMPRK 603 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +GIE +L P+ KV+F +G+ + + +++ KP L+ +V +L Sbjct: 604 NGIEAFAEIKKLQPEAKVLFTSGYTSDFIQ-SRGMEDGVELIMKPVQPAQLLRKVREVL 661 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 10/124 (8%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMPEMDG 61 +LA DD+ +KAL K + ASA D +R E P ++LL DI MP MDG Sbjct: 3 ILAIDDNHDNLLTLKALLKIFMPEANLITSASAQDGIRRALLEAPDTILL-DIQMPVMDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAP----KNAKVLSKPFHLRDLVNEVNRL 117 E RR + +P + + I A +P LSKP +LV ++ + Sbjct: 62 YEATRR-LKGNPSTQHIPIILVTAHRTDPSGKVRGLECGADAFLSKPIDEAELVAQIRAM 120 Query: 118 LTIK 121 + IK Sbjct: 121 VRIK 124 >gi|71737745|ref|YP_272455.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558298|gb|AAZ37509.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326583|gb|EFW82633.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320331095|gb|EFW87067.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330871966|gb|EGH06115.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 461 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S + +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|89897646|ref|YP_521133.1| hypothetical protein DSY4900 [Desulfitobacterium hafniense Y51] gi|89337094|dbj|BAE86689.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 487 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 57/105 (54%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ +D++D+R L + LG+ GYE++ ++E F +L DI +P+ DG++L Sbjct: 1 MILDDEEDLRSILAQRLGRRGYEILEAATAQEGMALLQETIFEAVLLDIRLPDGDGLQLL 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + PDL+V+ +TG + ++ L+KP +L +L Sbjct: 61 QAMKKRQPDLQVIMLTGHGTLESAIEAMKAGAYDYLTKPCNLSEL 105 >gi|157163473|ref|YP_001460791.1| transcriptional regulatory protein ZraR [Escherichia coli HS] gi|157069153|gb|ABV08408.1| response regulator ZraR [Escherichia coli HS] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|187730825|ref|YP_001882690.1| transcriptional regulator ZraR [Shigella boydii CDC 3083-94] gi|191168666|ref|ZP_03030447.1| response regulator ZraR [Escherichia coli B7A] gi|300824615|ref|ZP_07104723.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300907558|ref|ZP_07125196.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|301302183|ref|ZP_07208315.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|307315022|ref|ZP_07594608.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli W] gi|309797709|ref|ZP_07692095.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331680128|ref|ZP_08380789.1| transcriptional regulatory protein ZraR [Escherichia coli H591] gi|187427817|gb|ACD07091.1| response regulator ZraR [Shigella boydii CDC 3083-94] gi|190901306|gb|EDV61074.1| response regulator ZraR [Escherichia coli B7A] gi|300400725|gb|EFJ84263.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300522864|gb|EFK43933.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300842346|gb|EFK70106.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|306905527|gb|EFN36060.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli W] gi|308118721|gb|EFO55983.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|315063330|gb|ADT77657.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [Escherichia coli W] gi|315252727|gb|EFU32695.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|323174483|gb|EFZ60108.1| transcriptional regulatory protein zraR [Escherichia coli LT-68] gi|323380606|gb|ADX52874.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli KO11] gi|331072283|gb|EGI43617.1| transcriptional regulatory protein ZraR [Escherichia coli H591] gi|333010738|gb|EGK30166.1| transcriptional regulatory protein zraR [Shigella flexneri VA-6] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|327481612|gb|AEA84922.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 695 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +LL EDDD +R L AL GY V + SA + + + LLLT++ +P ++G Sbjct: 574 RTVLLVEDDDTVRPLLQSALEDFGYRVHLAADSQSALEVAAQLDSLDLLLTNVGLPGLNG 633 Query: 62 IELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + P L V+ ITG+A A D AP ++++KPF L L V R + Sbjct: 634 RQLAEMLQQRRPGLPVVLITGYAEQAATRLDCLAP-GMQLMTKPFSLELLAETVARAI 690 >gi|257438018|ref|ZP_05613773.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257199678|gb|EEU97962.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 236 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAEALEVLVKEYIDLIISDIMMPVMDGYE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 130 >gi|255263715|ref|ZP_05343057.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Thalassiobium sp. R2A62] gi|255106050|gb|EET48724.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Thalassiobium sp. R2A62] Length = 149 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 19/125 (15%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+A+DD +R L AL +A ++VV +GA+A D V E L++ DI MPEMDG+ Sbjct: 2 SRILIADDDATIRDVLRIALEQAHHDVVEVADGAAALDAVSEHAPDLIVLDIGMPEMDGL 61 Query: 63 ELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 ++ + R T P V+F+T + L D ++KPF R++V Sbjct: 62 QVCQELRRTHATP---VLFLTARSDEIDRIVGLELGADDY-------VTKPFSPREVVAR 111 Query: 114 VNRLL 118 + +L Sbjct: 112 IKAIL 116 >gi|227515346|ref|ZP_03945395.1| two component response regulator [Lactobacillus fermentum ATCC 14931] gi|227086260|gb|EEI21572.1| two component response regulator [Lactobacillus fermentum ATCC 14931] Length = 223 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + R L+ A+ GY V NG A D + + +++ DI+MP+++GIE Sbjct: 3 ILLAEDEKQLSRALVTAMQANGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGIEA 62 Query: 65 ARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ + V+ +T A + D+ A L+KPF L++L+ + L Sbjct: 63 LKQLRQTGNKTYVIMLTAMAEIDDKVTGLDAGAD---DYLTKPFSLKELLARLRSL 115 >gi|117923646|ref|YP_864263.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607402|gb|ABK42857.1| amino acid-binding domain sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 843 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + ++ L AG++V +NGAS K +E + L+L DI MP MDGI Sbjct: 720 RILLVEDDPVNQMVAVELLESAGHKVEVADNGASGLVKAQECSYDLVLMDIRMPGMDGIT 779 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 R RA E + + + G A L A + A VL+KP + L + V RL Sbjct: 780 ATRMLRAFEQAEGRERVPVLGLTADTLKETLLACREAGMDDVLTKPVRVNVLTDRVARL 838 >gi|331655705|ref|ZP_08356695.1| transcriptional regulatory protein ZraR [Escherichia coli M718] gi|331046630|gb|EGI18717.1| transcriptional regulatory protein ZraR [Escherichia coli M718] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|291523701|emb|CBK89288.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] Length = 231 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + K L Y VV NG A +K+ +E FSL++ DI+MP++DGIE Sbjct: 3 KILVVEDDKTVYSGIKKLLELQHYSVVIAQNGMEALEKI-DESFSLVIMDIMMPQLDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E + ++F++ + + ++KPF +L+++V L+ Sbjct: 62 TCRRMRERHS-VPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALI 115 >gi|220918424|ref|YP_002493728.1| response regulator receiver modulated PilZ sensor protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956278|gb|ACL66662.1| response regulator receiver modulated PilZ sensor protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 470 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDG 61 + L+ +DD R L +AL G+EVV+ + + ++ EE FSL L+TD+VMPE+DG Sbjct: 334 RALVVDDDALARAMLSEALAGRGFEVVTERDALAGLLRLAEEIFSLDVLVTDVVMPEVDG 393 Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSK---PFHLRDLVNEVNR 116 EL RR + + DL ++ +TG AL A +VL+K P + D V +++R Sbjct: 394 GELVRRIRHVGGERDLPIVAVTGSEDPALAARLRASGADEVLAKRIGPDGIADAVVKLHR 453 >gi|218779137|ref|YP_002430455.1| PAS/PAC sensor protein [Desulfatibacillum alkenivorans AK-01] gi|218760521|gb|ACL02987.1| putative PAS/PAC sensor protein [Desulfatibacillum alkenivorans AK-01] Length = 901 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N++IL+ +D+ + + L + GY+V + + A A++K +E P F +++TD MP M Sbjct: 748 NERILMVDDEKPILDMTRQTLERLGYQVTALTSAAGAWEKFQENPGKFDIVITDYNMPGM 807 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA+ L P + V+ TGF+ + + ++KP +++ + + ++L Sbjct: 808 TGDKLAQNLFSLRPQIPVIMCTGFSEKFSESLARELGIVEYVTKPVLMQEFAHTIRKVL 866 >gi|163756173|ref|ZP_02163288.1| two-component system, transcriptional regulatory protein [Kordia algicida OT-1] gi|161323785|gb|EDP95119.1| two-component system, transcriptional regulatory protein [Kordia algicida OT-1] Length = 237 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L Y+VV NG ++K +++ + L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGTVLKDYLSMNDYDVVHAKNGMEGFEKFKKDNYDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + ++ ++F+T A AL D K KV L+KPF Sbjct: 65 FTLAKEIREKNTEVPIIFLT---AKALKED--VMKGYKVGADDYLNKPF 108 >gi|197123639|ref|YP_002135590.1| response regulator receiver modulated PilZ sensor protein [Anaeromyxobacter sp. K] gi|196173488|gb|ACG74461.1| response regulator receiver modulated PilZ sensor protein [Anaeromyxobacter sp. K] Length = 470 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDG 61 + L+ +DD R L +AL G+EVV+ + + ++ EE FSL L+TD+VMPE+DG Sbjct: 334 RALVVDDDALARAMLSEALAGRGFEVVTERDAMAGLLRLAEEIFSLDVLVTDVVMPEVDG 393 Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSK---PFHLRDLVNEVNR 116 EL RR + + DL ++ +TG AL A +VL+K P + D V +++R Sbjct: 394 GELVRRIRHVGGERDLPIVAVTGSEDPALAARLRASGADEVLAKRIGPDGIADAVVKLHR 453 >gi|17229131|ref|NP_485679.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135459|dbj|BAB78005.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 347 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 10/117 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +R +L Y+ ++ ++G A Y + R+E SL+LTD+VMP MDG Sbjct: 229 ILVVDDEAAIRDITKTSLESHNYKAITASDGIEAIALYAEHRDE-ISLVLTDMVMPSMDG 287 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 + R +++P +K++ ++G AA + N N + LSKP+ L+ +N Sbjct: 288 LTTIRTLQKINPHVKIIAVSGLAA---HDKVNTAYNMGIQAFLSKPYTAYQLLQTIN 341 >gi|170691561|ref|ZP_02882726.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia graminis C4D1M] gi|170143766|gb|EDT11929.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia graminis C4D1M] Length = 450 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG++VV + SA + + ++++DI +P G+E Sbjct: 7 QVLYIEDDELVRRASVQSLQLAGFDVVGHASAESAAKSISADFSGVIVSDIRLPGASGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 67 LLAQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAL 121 >gi|220920804|ref|YP_002496105.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219945410|gb|ACL55802.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 814 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + +L+ EDD +R +I+ L + GY+ + +G + ++ LL+TD+ +P ++G Sbjct: 696 ETVLVVEDDATVRALVIEVLQELGYQALEAPDGPAGLRLLQSNVHVDLLITDVGLPGING 755 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA + P L+V+F+TG+A A + ++++KPF + L ++ +L Sbjct: 756 RQLADQVRLFRPHLRVLFMTGYAENAAFGNGQIGPGMQMITKPFAVDALATKIRAML 812 >gi|163801843|ref|ZP_02195740.1| flagellar protein FliS [Vibrio sp. AND4] gi|159174351|gb|EDP59155.1| flagellar protein FliS [Vibrio sp. AND4] Length = 469 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALLKLKSNAVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P++ V+ +T +A + + ++KPF L+N V+R IK Sbjct: 63 LALLRNIKQNWPNMPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPIK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|121998936|ref|YP_001003723.1| response regulator receiver protein [Halorhodospira halophila SL1] gi|121590341|gb|ABM62921.1| response regulator receiver protein [Halorhodospira halophila SL1] Length = 577 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 L DD+ + L++A LG G+ V++ NG A + RE+P ++L DI+MP MDG + Sbjct: 12 FLVVDDEPVNTMLLEAILGARGFHVITATNGEEAVARFREQPVDMILMDIMMPRMDGYQA 71 Query: 65 ARRATELDPD--LKVMFITGF 83 R+ +D + + V+F+T Sbjct: 72 TRQIKAMDTEGFIPVLFVTAL 92 >gi|332187626|ref|ZP_08389362.1| sensory box protein [Sphingomonas sp. S17] gi|332012374|gb|EGI54443.1| sensory box protein [Sphingomonas sp. S17] Length = 868 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MD 60 + +L+ +D+ +R ++ L G +V+ + AS +R + LL+TD+ +P M+ Sbjct: 739 ETVLVVDDESTVRLMVVDVLRDMGLQVIEAVDSASGLALLRSDRRIDLLITDVGLPGGMN 798 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G +LA A E+ +L VMF+TG+A A+ + ++L+KPF + LV V Sbjct: 799 GRQLAEAAREIRHELNVMFVTGYAESAVLNSGHLAPGMQLLTKPFTVDALVTGV 852 >gi|320353326|ref|YP_004194665.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320121828|gb|ADW17374.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 1165 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++ILL +D+ + L + GY V+S + A ++ P F ++TD MP + Sbjct: 1037 ERILLVDDEAMLAEMGKTMLERLGYTVISQTSSLEALAMFQQRPRDFDAVITDQTMPSLT 1096 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+LA+R + PDL ++ TGF+++ + A L KP + L + R+L Sbjct: 1097 GIDLAQRMLRIRPDLPIILCTGFSSLVNEQQAKACGVRGFLMKPLTKKGLAELLRRVL 1154 >gi|315612077|ref|ZP_07886994.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315315879|gb|EFU63914.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 232 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D + KPF R+LV Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIVKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|331670859|ref|ZP_08371694.1| transcriptional regulatory protein ZraR [Escherichia coli TA271] gi|331061947|gb|EGI33871.1| transcriptional regulatory protein ZraR [Escherichia coli TA271] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|293417506|ref|ZP_06660129.1| two-component system [Escherichia coli B185] gi|291430833|gb|EFF03830.1| two-component system [Escherichia coli B185] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|255038791|ref|YP_003089412.1| response regulator receiver protein [Dyadobacter fermentans DSM 18053] gi|254951547|gb|ACT96247.1| response regulator receiver protein [Dyadobacter fermentans DSM 18053] Length = 521 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 59/121 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL A+D+ D+ + I L GY V N+GA A D++ + F ++ D +MP M Sbjct: 1 MQYNILWADDEIDLLKPHIMFLTNKGYNVTPVNSGADALDRIENDRFDIVFLDEMMPGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E + + P+L V+ IT + D+ K L KP + ++ V ++L Sbjct: 61 GLETLAQIKQQQPNLPVVMITKSEEEHIMEDAIGSKIDDYLIKPLNPNQILLSVKKILDN 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|197118650|ref|YP_002139077.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088010|gb|ACH39281.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 456 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS---LLLTDIVMPE 58 +KIL+ +D++ + +L K L GY+V + N GA+ +++E S LLL D+ MP+ Sbjct: 3 QEKILICDDEEGILIYLKKLLQTQGYQVETFNGGAALLRRLKEGDPSDADLLLQDVRMPD 62 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 MDGI + + L P L ++ +T F + ++ ++KPF Sbjct: 63 MDGITVLKEVKALRPSLPIVIMTAFGTIDAAVEAIKMGAYDYVTKPF 109 >gi|116621412|ref|YP_823568.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224574|gb|ABJ83283.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1149 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ +R + K LGKAG+ V+ +GA A + LLL D+ +P Sbjct: 1032 VLIVEDEAPLRVAVKKMLGKAGFTVLEAADGAEAVKLLHSTASRIDLLLLDMTIPGCSSD 1091 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ R E P +KV+ + ++ ++N +AP+ + KPF L L++ + L+ Sbjct: 1092 EVLREGAESWPQMKVILTSAYSEESVNGSMSAPQVRGFVRKPFRLGTLLSALRTALS 1148 >gi|308272875|emb|CBX29479.1| hypothetical protein N47_J04600 [uncultured Desulfobacterium sp.] Length = 143 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIE 63 +L+A+D+ D ++ L K E ++G +A ++E+PF ++L D+ MP MDGIE Sbjct: 6 VLIADDETDFLETIVNRLQKRKIEATGVSSGEAALKLIKEKPFDIVLLDVKMPGGMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R +L P +V+ +TG A+V + L KP +L+ ++ Sbjct: 66 VLREVKKLQPLTEVILLTGHASVETGIEGLKLGAFDYLLKPVKFAELLEKL 116 >gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1209 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ + ++ L + G++V ++G A D + E F L+L D+ MP MDG+E Sbjct: 955 KILLAEDNEVNQLLAVRILSQEGHQVRGVHDGREAVDALARENFDLVLMDVQMPVMDGLE 1014 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R RA E + L + A AL D A + + KP DL E+ +L Sbjct: 1015 ATRLIRAREQEEGLLRTPVIAITAHALKGDREKCLEAGMDSYVQKPIRKADLFKEIKAVL 1074 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 23/32 (71%) Query: 45 EPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 +PF ++L D+ MPEM+G+++ ++DP +K Sbjct: 854 DPFQVMLLDMHMPEMNGLDVLEAMQDMDPSVK 885 >gi|162454290|ref|YP_001616657.1| hypothetical protein sce6013 [Sorangium cellulosum 'So ce 56'] gi|161164872|emb|CAN96177.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 146 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPEMDGIE 63 ILL +DD R L + L + G+ V NGA A ++ P +L+TD MP DGI Sbjct: 11 ILLVDDDVQSARLLERLLEEDGFRVELATNGALAIARLARRPMPDILVTDFRMPHADGIA 70 Query: 64 LARRATELDPDLKVMFITGF 83 +AR A L PDL + F TG+ Sbjct: 71 VARYARSLRPDLPLFFFTGY 90 >gi|46579036|ref|YP_009844.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448449|gb|AAS95103.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311232883|gb|ADP85737.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 832 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 8/122 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL+A+D+ R FL AL AGY+V+ ++G A + + + FSL L D+ MP +DG+ Sbjct: 538 RILVADDNPVNRLFLHDALTGAGYDVMCASDGLEALECLADGRGFSLALLDVRMPGLDGL 597 Query: 63 ELARRATELD-----PDLKVMFITGFAAVALNPD-SNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ R D PD V+ +T AA NAP + V+ KP + L+ +V+R Sbjct: 598 DVLRHMRAGDVPGIRPDTPVLMVTASAAGDERAQLLNAPADG-VIIKPLRVATLLEQVHR 656 Query: 117 LL 118 +L Sbjct: 657 VL 658 >gi|67925033|ref|ZP_00518415.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853127|gb|EAM48504.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 204 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + + L L K GYEV +G A + V+ EP L+L DI MPE+DG E+ Sbjct: 11 ILIVDDIPENLQLLFTMLTKQGYEVRRVLSGKQALNVVKVEPPDLILLDIRMPELDGYEV 70 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R A E ++ V+F++ + +SKPF L++++ V L + Sbjct: 71 CQRLKADETTQNIPVIFLSALNETFDKVTAFQVGGVDYISKPFQLQEVIIRVENQLNL 128 >gi|308272462|emb|CBX29066.1| hypothetical protein N47_J00470 [uncultured Desulfobacterium sp.] Length = 143 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 60/112 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++ +D+ + + L L KA E+ + + A + E+ F +L+TD+ M EMDGI++ Sbjct: 26 VMILDDEPIVCKRLRSTLEKANMEIETFTDPNEAVKRFSEKFFQILITDLKMKEMDGIDV 85 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + A + P+ KV+ ITG A V ++ ++KPF L L N V R Sbjct: 86 LKLARRISPETKVIIITGVATVEKAKEALKLGAYDFIAKPFKLSQLRNLVMR 137 >gi|302689121|ref|XP_003034240.1| histidine kinase [Schizophyllum commune H4-8] gi|300107935|gb|EFI99337.1| histidine kinase [Schizophyllum commune H4-8] Length = 1636 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 8/119 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 ++L+ ED+ +R L + L KAG E V NNG A D++ E+PF +L DI MP MDG Sbjct: 1512 RVLITEDNLINQRILNRQLVKAGCETVLANNGLQALDRLTSAEKPFDAVLMDIEMPVMDG 1571 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRDLVNEV 114 IE RR +++ ++ A+ N K K VL KP+ + +++ + Sbjct: 1572 IEAVRRIRQMEASGELRARNRVYALTANAREGQVKLIKEAGMDTVLIKPYRIEEVLQVI 1630 Score = 40.0 bits (92), Expect = 0.096, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ +MR ++ L V +CN G A D + +++L+D++MP MDG+ L Sbjct: 912 VLIADDNSEMRHYMKTILAPYVTVVEACN-GQEALDLAIKTKPNVVLSDVMMPIMDGMAL 970 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + P+L+ V+ +T + + L+KPF +LV V+ L + Sbjct: 971 VGDMQNI-PELRYIPVILVTAKSGDDSRVEGLLSGADDYLAKPFRSAELVARVHLQLQL 1028 >gi|291528837|emb|CBK94423.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 231 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + K L Y VV NG A +K+ +E FSL++ DI+MP++DGIE Sbjct: 3 KILVVEDDKTVYSGIKKLLELQHYSVVIAQNGMEALEKI-DESFSLVIMDIMMPQLDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E + ++F++ + + ++KPF +L+++V L+ Sbjct: 62 TCRRMRERHS-VPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALI 115 >gi|291280024|ref|YP_003496859.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290754726|dbj|BAI81103.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 118 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++A+D+ +R+ + L K G++V +NG A + L++ DI MP MDG E Sbjct: 2 KIVIADDELRLRKIVSLHLKKNGFDVYEASNGKEAVELALSLNPDLIVLDINMPVMDGFE 61 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 AR +++E D+ ++F+T A + K A L+KPF +DL+N++ Sbjct: 62 AARELKSSEKLKDIPIIFLTAKADMESIEKGKDLKAAYYLTKPFSPKDLINKI 114 >gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 234 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ + R + L + GY V +G A +KV+ E F L++ D+++P + G E Sbjct: 7 QILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEKFDLIILDVMLPGIGGFE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R LD + V+ +T +A + A L KPF+L++ + V+ +L Sbjct: 67 VCERIRTLDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGML 121 >gi|149176531|ref|ZP_01855144.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148844644|gb|EDL58994.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1025 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + +L+ +D++ + + L K GY V+ + A R SLLLTD MP+M+ Sbjct: 904 ETLLVCDDEESVLTVVSALLEKLGYSVIKALGPSKAIQAARSHIGKISLLLTDFNMPDMN 963 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA T+LDPDLKV+ ++G L + +++ KP + L ++ ++L Sbjct: 964 GQQLAEELTQLDPDLKVILLSGMMGDILEYGD----DFELIQKPAKIGQLAQKIRKVL 1017 >gi|117923522|ref|YP_864139.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607278|gb|ABK42733.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 771 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD + I L + G++V NNG AY+ +++ + L+L D+ MP MDG++ Sbjct: 642 KILLAEDDPINQEVAIGILQEDGHQVHCANNGQQAYEMAQQQAYDLILMDLRMPIMDGLQ 701 Query: 64 LARRATELDPDLK-VMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 + L I A L A + A +VL+KP HL+ L + R+ Sbjct: 702 ATTKIRAAHTGLNHATPIFALTADVLKDSLQACRTAGMDEVLTKPIHLQHLRYMLERV 759 >gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L ++++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLNLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|254521427|ref|ZP_05133482.1| sensory box histidine kinase/response regulator [Stenotrophomonas sp. SKA14] gi|219719018|gb|EED37543.1| sensory box histidine kinase/response regulator [Stenotrophomonas sp. SKA14] Length = 914 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDI-VMPEM 59 ++ +LL ED+D +R + L G+ V NG+ A + + F LL+TD+ + + Sbjct: 779 SRSVLLVEDEDAVRGLVRDVLSGLGHAVTEAANGSEALALLDSGQHFDLLVTDVGLTGTL 838 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G ++A + DL V+FITG+AA A + ++L+KPF +L V++LL+ Sbjct: 839 NGRQVADAGRQRRRDLPVLFITGYAASAAVGGEHLEPGMEILTKPFKAVELERRVDQLLS 898 >gi|188583721|ref|YP_001927166.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347219|gb|ACB82631.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 785 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 5/109 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 +IL+ ED+ ++ RF + L + G+ V N +A ++ PF + +D+VMP M G Sbjct: 661 RILVVEDNLEVGRFCTQILEELGHRPVWAENAEAALVELERAAPPFDAVFSDVVMPGMGG 720 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I LAR E PDL V+ +G++ V D++ ++L KP+ +L Sbjct: 721 IALARILRERLPDLPVVLTSGYSHVLAQDDAHG---FELLRKPYSAEEL 766 >gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + + + DI+MP+MDGIEL Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 66 CRRIRE-KHSLPIIFLSA 82 >gi|330809926|ref|YP_004354388.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378034|gb|AEA69384.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 557 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + L + GY V + A ++ + LL++D+ +P M+G Sbjct: 438 ETVLIVEDDPAVRVLVSAVLSELGYAFVEAADANGAVPILQSGQRIDLLISDVGLPGMNG 497 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +LA ++ PDL ++FITG+A A ++++KPF L +V ++T+ Sbjct: 498 RQLAEIGRQIRPDLPILFITGYAEHAAVRGGFLDPGMQMITKPFTFDLLTAKVREMITV 556 >gi|323698958|ref|ZP_08110870.1| response regulator receiver protein [Desulfovibrio sp. ND132] gi|323458890|gb|EGB14755.1| response regulator receiver protein [Desulfovibrio desulfuricans ND132] Length = 117 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +DD ++R +L + LG GY V+ N+GA A + + E L+ D+ MP Sbjct: 1 MSKKILIVDDDQEIRSYLSELLGDNGYATVTANDGAEAVEIAKTEKPDLITLDLEMPNEW 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G R+ ++ D LK V+ I+G A+ PK L+KPF Sbjct: 61 GPRFYRKISQ-DDALKRTPVVVISGLNAIQY----AIPKAVASLTKPFE 104 >gi|262381306|ref|ZP_06074444.1| two-component system sensor kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262296483|gb|EEY84413.1| two-component system sensor kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 911 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R +L L + V+ NGA A D + +E SL+++D++MPEM+G EL Sbjct: 660 ILIVEDDWDIRAYLQHEL-SGNFNVLVAENGAKALDILLKENVSLVVSDVMMPEMNGFEL 718 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLRDLVNEVNRLLT 119 RR + D+ + I AL+ DS + + KPF++ + + +LL Sbjct: 719 CRR---VKSDMALSHIPVILLTALSDDSQRLYGFEGGADEYIQKPFNIEIVKLRIIKLLE 775 Query: 120 IKN 122 +N Sbjct: 776 ERN 778 >gi|188583775|ref|YP_001927220.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347273|gb|ACB82685.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 585 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ ++ F +AL + GY V + A ++ P F ++ TD+VMP M+G+ Sbjct: 465 VLLVEDNREVGAFATQALTELGYGTVWAMDAEQALAELGRTPERFDVVFTDVVMPGMNGV 524 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR PD+ ++ +G++ V L D + +L KP+ + DL + R + Sbjct: 525 ELARTILSRTPDMPIVLSSGYSHV-LAEDGH--HGFPLLHKPYSVEDLSRILRRAI 577 >gi|162448892|ref|YP_001611259.1| hypothetical protein sce0622 [Sorangium cellulosum 'So ce 56'] gi|161159474|emb|CAN90779.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 202 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 65/119 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + ++ L + GY+V + + + ++VR + L++ D++MP++DGIE Sbjct: 9 RILIVDDDRAICDYMQTLLERDGYQVKTLGDPTTVEEEVRTGGYHLIILDLMMPKLDGIE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +R ++D D+ V+ TGF + S + KPF++ + + R++ K Sbjct: 69 VLKRIRKVDNDIAVVIFTGFPNLESAVASMKLDAVDYIKKPFNVDEFREVLARVMRKKG 127 >gi|154249379|ref|YP_001410204.1| response regulator receiver protein [Fervidobacterium nodosum Rt17-B1] gi|154153315|gb|ABS60547.1| response regulator receiver protein [Fervidobacterium nodosum Rt17-B1] Length = 119 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR L L KAG+EVV NG A +K +E ++ DI MPEM+GI Sbjct: 3 KVLVVDDAAFMRMMLKDILTKAGHEVVGEAANGVEAVEKYKELKPDVVTMDITMPEMNGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + DP+ V+ + A+ ++ + KPF ++ + ++L Sbjct: 63 DAIKEIKKFDPNATVIVCSAMGQQAMVIEAIQAGAKDFIVKPFQAARVIEAIQKVL 118 >gi|54308114|ref|YP_129134.1| putative response regulator [Photobacterium profundum SS9] gi|46912540|emb|CAG19332.1| putative response regulator [Photobacterium profundum SS9] Length = 466 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ ++L+ EDD +R L+ L AGY+ + ++ A ++ EP ++++D+ M M Sbjct: 1 MNQSRVLVVEDDKGLREALVDTLALAGYQWLEADSAEKALLILKSEPVDIVVSDVQMAGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DG+ L R + P V+ +T +A + + ++KPF L+N V+R Sbjct: 61 DGLGLLRNIKKNWPKTPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSR 117 >gi|84499472|ref|ZP_00997760.1| PAS sensor Signal Tranduction Histidine Kinase [Oceanicola batsensis HTCC2597] gi|84392616|gb|EAQ04827.1| PAS sensor Signal Tranduction Histidine Kinase [Oceanicola batsensis HTCC2597] Length = 962 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ +R ++ L G +V G A + + F +L+ D+ +P+M G+E Sbjct: 839 RVLVCEDEVLIRMDIVAVLEDLGADVSQAATGGQALKALEDGEFDVLMVDVGLPDMTGVE 898 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +A A P+L ++F TG + VA ++ + VL KPF ++L V RL Sbjct: 899 VAHAARAARPELAIVFCTGRSEVA---SADEFERCAVLQKPFCDKELTAIVRRL 949 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 ++ +LL EDD D+R L + GY V + + +A + ++ + ++++D+VMP Sbjct: 695 HESLLLVEDDPDVRDSTAAILEELGYSVRTAPDPGAALEIMKAWDALDMVISDVVMPGDI 754 Query: 61 GIEL---ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ A RA + DL V+FI+G++ A+ D ++L KPF +L +V Sbjct: 755 GVGAMVDALRARQ--KDLPVLFISGYSRDAIARDGRVDAGVRLLIKPFSQEELAVKVREA 812 Query: 118 L 118 L Sbjct: 813 L 813 >gi|332707304|ref|ZP_08427357.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354038|gb|EGJ33525.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 876 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D R ++ L G+E++ NG +K E L++TD+VMP MDG+ Sbjct: 663 RKILVVDDKWQNRSVIVNVLQPLGFELLEATNGVEGLEKATECNPDLIITDLVMPVMDGL 722 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLT 119 E+ RR LD LK + I +A D +A + KP + +L+ ++ + L Sbjct: 723 EMMRRLRSLD-KLKDLLIIASSASVYELDQQQSWHAGCDDFIPKPVDVAELLEKLKQHLQ 781 Query: 120 IK 121 ++ Sbjct: 782 LE 783 >gi|325264868|ref|ZP_08131596.1| putative response regulator receiver domain protein [Clostridium sp. D5] gi|324029857|gb|EGB91144.1| putative response regulator receiver domain protein [Clostridium sp. D5] Length = 529 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++A+D++++RR ++ + + G++VV NG A + V + LLLTDI MP + G Sbjct: 4 VIVADDEEEIRRGIVWKVKWEEIGFQVVGEAENGIEALELVEKLEPDLLLTDIRMPFLSG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 IELAR+ E+ P +++ F++GF Sbjct: 64 IELARQVREVRPTVQIAFLSGF 85 >gi|298383847|ref|ZP_06993408.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298263451|gb|EFI06314.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1433 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G +EV +G S ++K R L++ D++MP M G Sbjct: 1172 RKVLIIEDDNDIREFLKEEVG-VYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1230 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1231 EVTKK-------LKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLAR 1283 Query: 114 VNRLL 118 V RL+ Sbjct: 1284 VFRLI 1288 >gi|322417990|ref|YP_004197213.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124377|gb|ADW11937.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 685 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS--AYDKVREEPFSLLLTDIVMPEMDGI 62 +LL EDDD +R L + GY+V+ + A VR +L+LTD++MP M G Sbjct: 566 VLLVEDDDMVRNVTRSYLEELGYQVIVAKTPQAGIAACAVRHNKINLVLTDVIMPGMSGK 625 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + E P +KV+F++G+ A + A + + KPF + L Sbjct: 626 VMVHAIKETLPRVKVLFMSGYTADLVARSGVAEEGMHFIQKPFDISTL 673 >gi|254881403|ref|ZP_05254113.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254834196|gb|EET14505.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1348 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+D+RR++ + L + + SCN G A + + + L+++D++MPEMDG+ Sbjct: 1091 KVLVVEDDEDIRRYICRELASDYHTLESCN-GKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 LARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R+ + L+ + V+ +T N + ++KPFH+ L Sbjct: 1150 LCRKIKQNVNLN-HIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEIL 1198 >gi|253570047|ref|ZP_04847456.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840428|gb|EES68510.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1433 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G +EV +G S ++K R L++ D++MP M G Sbjct: 1172 RKVLIIEDDNDIREFLKEEVG-VYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1230 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1231 EVTKK-------LKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLAR 1283 Query: 114 VNRLL 118 V RL+ Sbjct: 1284 VFRLI 1288 >gi|238792704|ref|ZP_04636336.1| Transcriptional regulatory protein zraR [Yersinia intermedia ATCC 29909] gi|238728060|gb|EEQ19582.1| Transcriptional regulatory protein zraR [Yersinia intermedia ATCC 29909] Length = 440 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Query: 10 DDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 DDD +I+AL GY+V +NG A ++ +E PF L++TD+ M EMDGIE + Sbjct: 3 DDDLSHCTIIRALMTGWGYQVSLAHNGREAVERTKEIPFDLIVTDVRMSEMDGIEALKTI 62 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +P + ++ +T ++ + D+ L+KP Sbjct: 63 KAYNPAIPILIMTAYSNIESAVDAIKSGAYDYLTKPL 99 >gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V S NG A + + + + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L ++F++ Sbjct: 76 CRRIRE-KHSLPIIFLSA 92 >gi|169832314|ref|YP_001718296.1| response regulator receiver protein [Candidatus Desulforudis audaxviator MP104C] gi|169639158|gb|ACA60664.1| response regulator receiver protein [Candidatus Desulforudis audaxviator MP104C] Length = 120 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 63/115 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +R+ L +AL G+ VV +NG A + R++ L+L D+ MP + G+E Sbjct: 2 LLVVDDQPAIRQLLSEALESEGHAVVVASNGYEAINITRQQKPELILLDLKMPGLGGLET 61 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + PD+ V+ IT + ++ ++ +++ KPF L ++ + V +L+ Sbjct: 62 LREIHKYSPDIPVILITAYGELSDLGEAERLGVRRLIIKPFDLNEVRSLVRSVLS 116 >gi|167761520|ref|ZP_02433647.1| hypothetical protein CLOSCI_03931 [Clostridium scindens ATCC 35704] gi|167661186|gb|EDS05316.1| hypothetical protein CLOSCI_03931 [Clostridium scindens ATCC 35704] Length = 241 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+ + R + L K GYEV+S A A + RE L+++DI M + +G+E Sbjct: 14 KILLLEDDESLNRGISLKLKKEGYEVLSATGVAEAKEMFRENEVDLIISDISMEDGNGLE 73 Query: 64 LARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ D+ ++F+T + D+ A ++KPF L L+++VN L+ Sbjct: 74 FGQSVRKV-SDVYLIFLTALDQEVDIVNGYDAGAD---DYITKPFSLMVLISKVNALM 127 >gi|150002641|ref|YP_001297385.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931065|gb|ABR37763.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1349 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+D+RR++ + L + + SCN G A + + + L+++D++MPEMDG+ Sbjct: 1090 KVLVVEDDEDIRRYICRELASDYHTLESCN-GKEALESIFNKTPDLVISDVMMPEMDGLT 1148 Query: 64 LARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R+ + L+ + V+ +T N + ++KPFH+ L Sbjct: 1149 LCRKIKQNVNLN-HIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEIL 1197 >gi|158521626|ref|YP_001529496.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158510452|gb|ABW67419.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 228 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 ++L+AED+D R+ L L K GYEV +G A++ + ++P ++L D +MP MDGI Sbjct: 2 RVLIAEDNDATRKMLETLLVKWGYEVSLARDGGQAWEILFSKDPPGMVLLDWMMPRMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL---VNEVNR 116 EL R ++ +I A + D A A + KPFH +L + R Sbjct: 62 ELCREIRAATSGVEASYIILLTARSERSDLIAGLEAGADDYVVKPFHADELKMRIQSGRR 121 Query: 117 LLTIKN 122 +L ++ Sbjct: 122 ILALQE 127 >gi|7019233|gb|AAF35253.1|AF060169_1 AS11 protein [Homo sapiens] Length = 122 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 ++ +++ EDD +R ++ L + GY V + +A + LL+TD+ +P M+ Sbjct: 1 DESVMVVEDDPAVRMLVLNVLDELGYTVHPAADARTALPLLESSLRIDLLVTDVGLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + P LKV+F+TG+A A +++KPF L L N V ++ Sbjct: 61 GRQLAEVARQHRPGLKVLFMTGYAEKAAERQGFLEPGMDLIAKPFTLDALANRVRDMI 118 >gi|85860826|ref|YP_463028.1| response regulator [Syntrophus aciditrophicus SB] gi|85723917|gb|ABC78860.1| response regulator with sigma 54 interaction domain [Syntrophus aciditrophicus SB] Length = 502 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D+ +MR L L K GY+V +G A + + +E +++TD+ MP++ G+ Sbjct: 2 EKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL--TI 120 L T P+ V+ IT + D+ ++KPF +L++ + + + I Sbjct: 62 GLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTRI 121 Query: 121 KN 122 KN Sbjct: 122 KN 123 >gi|66045680|ref|YP_235521.1| response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63256387|gb|AAY37483.1| Response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|330953353|gb|EGH53613.1| response regulator receiver [Pseudomonas syringae Cit 7] gi|330971299|gb|EGH71365.1| response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 123 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 7/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ EDD +R ++ L + Y+V+ + SA V ++ LL+TD +P+M Sbjct: 6 RTILVVEDDAIVRMLIVDVLEELEYKVLEAEDATSALTFVADDSNHIDLLMTDQGLPDMK 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA++ EL P L V+F +G++ + + P + KPF + L ++V +L Sbjct: 66 GTALAKKVIELRPQLPVLFASGYSE-----NIDVPPGMHSIGKPFSIDQLRDKVKSIL 118 >gi|29349586|ref|NP_813089.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341496|gb|AAO79283.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1433 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G +EV +G S ++K R L++ D++MP M G Sbjct: 1172 RKVLIIEDDNDIREFLKEEVG-VYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1230 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ ++KPF ++ L+ Sbjct: 1231 EVTKK-------LKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLAR 1283 Query: 114 VNRLL 118 V RL+ Sbjct: 1284 VFRLI 1288 >gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435] gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus haemolyticus JCSC1435] Length = 241 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + + + +NG AY+ E ++ +L D+++PEMD Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|307297209|ref|ZP_07577019.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877356|gb|EFN08589.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 869 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 Q +L+ EDD +R + + L + GY V +G A V + P L+++D+ +P M Sbjct: 751 GQTVLVVEDDPSVRILVREVLEELGYAAVEAGDGTEAI-PVLKSPRILDLMISDVGLPGM 809 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA A E P L ++F+TG+A A N +++KPF L L +++ ++ Sbjct: 810 NGRQLAEIAREHRPTLPILFVTGYAENAAIRAGFLGTNMDMITKPFALDMLAAKIHDMM 868 >gi|117626266|ref|YP_859589.1| transcriptional regulatory protein ZraR [Escherichia coli APEC O1] gi|218561070|ref|YP_002393983.1| transcriptional regulatory protein ZraR [Escherichia coli S88] gi|237702771|ref|ZP_04533252.1| transcriptional regulatory protein ZraR [Escherichia sp. 3_2_53FAA] gi|115515390|gb|ABJ03465.1| ZraR, fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [Escherichia coli APEC O1] gi|218367839|emb|CAR05634.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator ; sigma54 interaction protein [Escherichia coli S88] gi|226903084|gb|EEH89343.1| transcriptional regulatory protein ZraR [Escherichia sp. 3_2_53FAA] gi|294492135|gb|ADE90891.1| response regulator ZraR [Escherichia coli IHE3034] gi|323948825|gb|EGB44722.1| sigma-54 interaction domain-containing protein [Escherichia coli H252] gi|323953784|gb|EGB49591.1| sigma-54 interaction domain-containing protein [Escherichia coli H263] Length = 441 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I + L+P + V+ +T ++++ ++ L KP +L + + + L Sbjct: 65 IATLKEIKTLNPAIPVLIMTAYSSIETAVEALKTGALDYLIKPLDFDNLQSTLEKAL 121 >gi|158319790|ref|YP_001512297.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139989|gb|ABW18301.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus oremlandii OhILAs] Length = 455 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + R F LG GYEV + +G V + P L++TD+ M +DGI+ Sbjct: 5 RILIVDDESEFRDFYELILGDKGYEVYTAFSGEDCLQMVEKNPVDLVITDLKMTGIDGIQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + + P+ V+ ITG+ V ++ K + +L+ E+ +L+ +++ Sbjct: 65 LLEKLKDTVPECAVIIITGYGTVETAVEAIRKGAFGYFIKGHNPEELIIEIEKLVKMRS 123 >gi|33597530|ref|NP_885173.1| nitrogen regulation protein NR(I) [Bordetella parapertussis 12822] gi|33601928|ref|NP_889488.1| nitrogen regulation protein NR(I) [Bordetella bronchiseptica RB50] gi|33573958|emb|CAE38276.1| nitrogen regulation protein NR(I) [Bordetella parapertussis] gi|33576366|emb|CAE33444.1| nitrogen regulation protein NR(I) [Bordetella bronchiseptica RB50] Length = 496 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + + + +DD +R L KAL +AG S + A + + S+L++DI MP D Sbjct: 1 MMKPVWIVDDDQAIRWVLEKALARAGIATRSFSRAADVLQALAADVPSVLVSDIRMPGGD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R+ E +P L V+ +T FA + + L+KPF + + V + R + Sbjct: 61 GLELLRQIKERNPGLPVIVMTAFADLDSTVSAFQGGAFDYLAKPFDVNEAVALIQRAM 118 >gi|298483802|ref|ZP_07001975.1| one-component system sensor histidine kinase/response regulator [Bacteroides sp. D22] gi|298270096|gb|EFI11684.1| one-component system sensor histidine kinase/response regulator [Bacteroides sp. D22] Length = 1358 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE +L+++DI+MP++DGI Sbjct: 1106 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1164 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1222 >gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 222 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GY V NG D+ R L++ D+ +PEMDG+E+ Sbjct: 4 VLLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAGDIDLMVLDLGLPEMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 64 ARRLRAEGHGTPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|238922778|ref|YP_002936291.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656] gi|238874450|gb|ACR74157.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656] Length = 231 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + K L Y VV NG A +K+ +E FSL++ DI+MP++DGIE Sbjct: 3 KILVVEDDKTVYSGIKKLLELQHYSVVIAQNGMEALEKI-DESFSLVIMDIMMPQLDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E + ++F++ + + ++KPF +L+++V L+ Sbjct: 62 TCRRMRERHS-VPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALI 115 >gi|160887592|ref|ZP_02068595.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483] gi|156108003|gb|EDO09748.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483] Length = 1360 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE +L+++DI+MP++DGI Sbjct: 1108 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1224 >gi|94265291|ref|ZP_01289049.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454225|gb|EAT04543.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 564 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL +D+ + L + GY V + +G +A + +R +P + LL+TD MPE++ Sbjct: 442 ERILFVDDELPVIEAFAPMLERLGYRVDTTTSGKTALETIRRQPEGYDLLVTDYNMPEIN 501 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ELAR L+P L V+ TG++ + ++KPF + + + + L Sbjct: 502 GSELARAVLALNPQLPVVLCTGYSGPLSEQECFKMGITAYVAKPFRVDEFAATIRQALQN 561 Query: 121 K 121 K Sbjct: 562 K 562 >gi|91203948|emb|CAJ71601.1| strongly similar to sigma 54 response regulator protein ntrC [Candidatus Kuenenia stuttgartiensis] Length = 463 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-E 58 MN+ KIL+ +D++ R+ L AL + G++V + +G A + ++ FSL++ D+ +P Sbjct: 1 MNRTKILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGS 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DG+EL +RA E++ + ++ +T + + ++ ++KPF + +++ + R++ Sbjct: 61 IDGLELLQRAKEMN-NASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMI 119 >gi|70733806|ref|YP_257446.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68348105|gb|AAY95711.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 468 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +V+S ++ + ++++DI MP MDG+E Sbjct: 12 QVVLIDDDPHLRQALSQTLDLAGLKVLSLAEAQGLAPRLERDWPGVVVSDIRMPGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + DP+L V+ ITG V L + L KPF L++ V R L Sbjct: 72 LLNQLHAQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRAL 126 >gi|83311728|ref|YP_421992.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82946569|dbj|BAE51433.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 278 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++I + +D+ D+R L + L GY V +GA A +R +P L + D+ +P+MDG Sbjct: 44 RKRIYVVDDEPDIRALLRQVLEGYGYHVTPLASGALARQAIRRDPPDLCIVDLGLPDMDG 103 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R E D V+ +TG V+ + KPF R+LV VN ++ + Sbjct: 104 LTLVRELWE-DVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRR 162 Query: 122 N 122 + Sbjct: 163 D 163 >gi|299146431|ref|ZP_07039499.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298516922|gb|EFI40803.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1360 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE +L+++DI+MP++DGI Sbjct: 1108 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1224 >gi|294646909|ref|ZP_06724530.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292637854|gb|EFF56251.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1347 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE +L+++DI+MP++DGI Sbjct: 1095 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1153 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1154 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1211 >gi|293371358|ref|ZP_06617795.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|294810799|ref|ZP_06769445.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|315919426|ref|ZP_07915666.1| conserved hypothetical protein [Bacteroides sp. D2] gi|292633718|gb|EFF52273.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|294441987|gb|EFG10808.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|313693301|gb|EFS30136.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1358 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE +L+++DI+MP++DGI Sbjct: 1106 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1164 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1222 >gi|237722419|ref|ZP_04552900.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|260171106|ref|ZP_05757518.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|229448229|gb|EEO54020.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1360 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE +L+++DI+MP++DGI Sbjct: 1108 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1224 >gi|222054627|ref|YP_002536989.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221563916|gb|ACM19888.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 454 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 14/131 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +DD +RR L L + GYEV++ +G + E L++TD+ MP + Sbjct: 1 MTAKILLIDDDTSLRRVLEYNLQEEGYEVITAVDGETGLALFNEHSPPLVITDLKMPGIT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-------------L 107 G ++ E P V+ IT F A+ ++ ++KPF+ L Sbjct: 61 GFQVLSTIKERSPATLVIVITAFGAIDTAIEAMKLGAHDYITKPFNRDQLKLVVKKALEL 120 Query: 108 RDLVNEVNRLL 118 R L E NRLL Sbjct: 121 RGLTEE-NRLL 130 >gi|70730610|ref|YP_260351.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344909|gb|AAY92515.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 556 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 + +L+ EDD +R + L + GY V + SA + + LL++D+ +P M+G Sbjct: 438 ETVLIVEDDPAVRVLVCAVLSELGYAFVEAGDARSAMPILDSAQRIDLLISDVGLPGMNG 497 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA ++ P+LKV+FITG+A A ++++KPF L +V ++ Sbjct: 498 RQLAEIGRQIRPELKVLFITGYAEHAAARGGFLEPGMQLITKPFTFDLLTAKVREMI 554 >gi|319642790|ref|ZP_07997428.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317385534|gb|EFV66475.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1353 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+D+RR++ + L + + SCN G A + + + L+++D++MPEMDG+ Sbjct: 1091 KVLVVEDDEDIRRYICRELASDYHTLESCN-GKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 LARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R+ + L+ + V+ +T N + ++KPFH+ L Sbjct: 1150 LCRKIKQNVNLN-HIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEIL 1198 >gi|212690570|ref|ZP_03298698.1| hypothetical protein BACDOR_00056 [Bacteroides dorei DSM 17855] gi|212666919|gb|EEB27491.1| hypothetical protein BACDOR_00056 [Bacteroides dorei DSM 17855] Length = 474 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L LGK G+ V + ++ A A ++ +P+ L+L+D+ +P+ D Sbjct: 15 MPHSILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLPDQD 74 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI L E ++ ++ +TG+A + + + +SKP +L+ ++N L Sbjct: 75 GIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPVQPDELLKKINEALQN 134 Query: 121 K 121 K Sbjct: 135 K 135 >gi|168702165|ref|ZP_02734442.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 881 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 + +LL ED+D +R L GY V+ +G +A + R + LL+TD+VMPEM Sbjct: 760 ETVLLVEDEDAVRSLCSLVLEAQGYTVLPAADGRAALAAIAGRRDRIHLLVTDVVMPEMS 819 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA L PD +V+FI+G+ A+ + L KPF L +V +L Sbjct: 820 GRALADAVRTLQPDARVLFISGYTDDAVVRHGVRGEADAFLQKPFTPLGLARKVRAVL 877 >gi|218779448|ref|YP_002430766.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760832|gb|ACL03298.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 678 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD++ R+ ++AL K GYE +S NG A +K E +L+++D++MP+MDG EL Sbjct: 4 ILIVDDNEQNRYFLEALLKGFGYETLSAENGVQALEKAAECLPALVISDLLMPQMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNP 90 RR + P LK + + A P Sbjct: 64 CRR-WKAHPHLKDIPFVVYTATYTEP 88 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMD 60 ++ IL+A+D + + L + GY V+ NNG A R E L + D+VMP ++ Sbjct: 558 SETILVADDQEMLLDLTEHILEREGYTVLRANNGREAVSIARANENIDLAILDMVMPVLN 617 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + ++P +K +F +G++ ++ + K +++KP+ L+ +V +L Sbjct: 618 GKAAMEEISRINPKVKFLFASGYSQEGVHENYVLQKGLNLINKPYPSEQLLQKVRDIL 675 >gi|218781051|ref|YP_002432369.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218762435|gb|ACL04901.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 182 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 51/87 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ILL EDD +R + + L GY V + + G +A + + + F L+LTD+VM ++ G Sbjct: 3 DYSILLVEDDYYIRNAIARDLQSRGYRVAAASGGEAALELLTVQSFDLVLTDLVMEQVGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVAL 88 +E+ + A PD V+ +TG+ V++ Sbjct: 63 LEVLKAAKTRSPDTMVIILTGYGKVSI 89 >gi|120603378|ref|YP_967778.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120563607|gb|ABM29351.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 831 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 8/122 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL+A+D+ R FL AL AGY+V ++G A + + + FSL L D+ MP +DG+ Sbjct: 537 RILVADDNPVNRLFLHDALTGAGYDVTCASDGLEALECLADGHGFSLALLDVRMPGLDGL 596 Query: 63 ELARRATELD-----PDLKVMFITGFAAVALNPD-SNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ R D PD V+ +T AA NAP + V+ KP + L+ +V+R Sbjct: 597 DVLRHMRAGDVPGIRPDTPVLMVTASAAGDERAQLLNAPADG-VIIKPLRVATLLEQVHR 655 Query: 117 LL 118 +L Sbjct: 656 VL 657 >gi|84394301|ref|ZP_00993025.1| Response regulator [Vibrio splendidus 12B01] gi|84375069|gb|EAP91992.1| Response regulator [Vibrio splendidus 12B01] Length = 367 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +NQK ++L +DD RR L K GY+VV NG A K+R+ L++ D+ MP + Sbjct: 17 LNQKCVMLVDDDPIFRRITSAYLDKIGYKVVEAENGLDALQKLRDSAPDLIVCDLSMPIL 76 Query: 60 DGIELARRATELDPDLKVMFITG 82 DGIEL + P L ++ ++G Sbjct: 77 DGIELVEELSLEYPSLPMIVVSG 99 >gi|291532478|emb|CBL05591.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 194 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + RFL L G+ S +NG AY+++ +E + L+L DI++P+MDG+ Sbjct: 3 KILIVEDEHRIARFLQMELEHEGFSTASESNGLRAYERIIQEDYDLVLLDIMLPDMDGLT 62 Query: 64 LARRATELDPDLKVMFITG 82 + + +L D+ ++ +T Sbjct: 63 ICQNVRKLS-DIPIIMLTA 80 >gi|288799669|ref|ZP_06405128.1| DNA-binding response regulator RprY [Prevotella sp. oral taxon 299 str. F0039] gi|288332917|gb|EFC71396.1| DNA-binding response regulator RprY [Prevotella sp. oral taxon 299 str. F0039] Length = 232 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GY C +G + Y + + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYAATLCPDGEAGYKEFLKNKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + D+ ++F+T A L D + K+ ++KPF + +LV + +L Sbjct: 66 LAQEIRQSNADMPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|218708909|ref|YP_002416530.1| response regulator [Vibrio splendidus LGP32] gi|218321928|emb|CAV17922.1| response regulator [Vibrio splendidus LGP32] Length = 367 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +NQK ++L +DD RR L K GY+VV NG A K+R+ L++ D+ MP + Sbjct: 17 LNQKCVMLVDDDPIFRRITSAYLDKIGYKVVEAENGLDALQKLRDSAPDLIVCDLSMPIL 76 Query: 60 DGIELARRATELDPDLKVMFITG 82 DGIEL + P L ++ ++G Sbjct: 77 DGIELVEELSLEYPSLPMIVVSG 99 >gi|261404079|ref|YP_003240320.1| two component AraC family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280542|gb|ACX62513.1| two component transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10] Length = 270 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+LL ED+ +R + I A + G++V NGA A + +R P L+LTDIVMPEMD Sbjct: 3 KVLLVEDEVFVRESVREIIAWEELGFKVAGEAGNGAEALEMIRSNPPDLVLTDIVMPEMD 62 Query: 61 GIELARRATE 70 G+EL RR E Sbjct: 63 GVELLRRTRE 72 >gi|261405046|ref|YP_003241287.1| two component AraC family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281509|gb|ACX63480.1| two component transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10] Length = 390 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 2 NQKILLAEDDDDMRRFLIKAL--GKAGYEVVSCN-NGASAYDKVREEPFSLLLTDIVMPE 58 N K+++A+D+ +R+ L + + G EVV+ + NG +A++ E +++TDIVMPE Sbjct: 5 NIKVMIADDESIVRKGLRSTVPWERFGMEVVADSPNGQAAWEAFLEFRPQVVITDIVMPE 64 Query: 59 MDGIELARRATELDPDLKVMFIT 81 MDGIEL+R+ E P+ +++ ++ Sbjct: 65 MDGIELSRKVKEAAPETRIILLS 87 >gi|121533748|ref|ZP_01665575.1| response regulator receiver protein [Thermosinus carboxydivorans Nor1] gi|121307739|gb|EAX48654.1| response regulator receiver protein [Thermosinus carboxydivorans Nor1] Length = 120 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M KIL+ +D MR + L K GYEVV NG A +K +E L DI MPEM Sbjct: 1 MAAKILIVDDAAFMRMMIKDILTKNGYEVVGEAENGLKAIEKYQELRPDLTTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGI ++ ++DP K++ + A+ ++ + KPF Sbjct: 61 DGITAVKQIKKIDPAAKIIMCSAMGQQAMVIEAIQSGARDFIVKPFQ 107 >gi|329961774|ref|ZP_08299805.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531515|gb|EGF58355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1327 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ ED+D++R +L++ L Y V C+NG A V+E L+L+DI+MPEM G Sbjct: 1067 QKILIVEDNDELRAYLLQCLSST-YNVQVCSNGKEALVLVKEFWPELILSDIMMPEMGGD 1125 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + + D++ I AL + + + ++ + KPF L L + L Sbjct: 1126 EL---CSAIKNDMETSHIPVLLLTALADEKHILEGLQIGADEYIVKPFSLNILKASIANL 1182 Query: 118 L 118 L Sbjct: 1183 L 1183 >gi|303327193|ref|ZP_07357635.1| sigma-54 dependent DNA-binding response regulator Nla6 [Desulfovibrio sp. 3_1_syn3] gi|302863181|gb|EFL86113.1| sigma-54 dependent DNA-binding response regulator Nla6 [Desulfovibrio sp. 3_1_syn3] Length = 487 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D L K + + GYE C +G A D E +++TDI MP MDGIE Sbjct: 2 KILLIDDEKDFVSSLEKFIIQLGYETSVCYSGQEALDVFYREAPDIIITDIQMPRMDGIE 61 Query: 64 LARRATE-LDPDLKVMFITGFA 84 RR + + + ++ +TGF+ Sbjct: 62 FIRRVKQVIGHHIDIIVVTGFS 83 >gi|302036616|ref|YP_003796938.1| sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] gi|300604680|emb|CBK41012.1| Sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] Length = 464 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 1/106 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q K+ + +DD+ R L +AL K GYEV + ++G +A ++ ++ ++LTDI M + Sbjct: 1 MSQAKLFVVDDDEAARTLLAEALAKEGYEVEAFSSGQAAVERGKQSRADVVLTDIRMEQG 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 DG + + + PD ++ +T F ++ ++ L+KPF Sbjct: 61 DGFLVLKEFKKFSPDTSIVLLTAFGSLEGAIEAIKQGAYDYLAKPF 106 >gi|291279589|ref|YP_003496424.1| two-component system, chemotaxis family, response regulator CheY [Deferribacter desulfuricans SSM1] gi|290754291|dbj|BAI80668.1| two-component system, chemotaxis family, response regulator CheY [Deferribacter desulfuricans SSM1] Length = 122 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 14/126 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D MR+ + L AG++VV +NG A K+ ++ F+L++TD+ MP MD Sbjct: 1 MAKKILVIDDAVTMRQLVSATLKSAGFDVVDASNGKEALMKLEKDRFNLIITDLNMPIMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--------VLSKPFHLRDLVN 112 GI + + +P +++ I + L +S A K + + KPF DL+ Sbjct: 61 GITFIKEVKK-NPKYRLIPI-----IMLTTESGADKKEEGRKAGAKAWIVKPFKPNDLLT 114 Query: 113 EVNRLL 118 V ++L Sbjct: 115 VVKKIL 120 >gi|288958266|ref|YP_003448607.1| two-component response regulator [Azospirillum sp. B510] gi|288910574|dbj|BAI72063.1| two-component response regulator [Azospirillum sp. B510] Length = 126 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 58/116 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ L L G+ V NG A ++ EP L+TD+ MP MDG L Sbjct: 7 ILIAEDEVLAAMALDDFLSFKGFRVTVAANGVEALERYSNEPVDALVTDLRMPRMDGQTL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + D L V+ +TG+ + + K ++LSKP + R + +NR+L + Sbjct: 67 IREIRDRDARLPVVVMTGYLTQDSDLKDDRWKPLEILSKPVNPRVICATLNRMLGL 122 >gi|226227545|ref|YP_002761651.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226090736|dbj|BAH39181.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 699 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 +++L+ +D+ +R + + L GYE+ +G A + + F L+L+D+VMP Sbjct: 568 ERVLVVDDEQAVRAVVERVLASDGYELHVARDGGEALELFEAHNGAFDLILSDVVMPRTS 627 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ELA P + V+ ++G+ V D + ++SKPF+ L V R L Sbjct: 628 GVELAGAVRRRAPGIPVLLMSGYGDVQAVQDE-LERGTALISKPFNASTLREAVRRALND 686 Query: 121 KN 122 ++ Sbjct: 687 RD 688 >gi|251795686|ref|YP_003010417.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543312|gb|ACT00331.1| two component transcriptional regulator, AraC family [Paenibacillus sp. JDR-2] Length = 245 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ EDDD +RR ++K + K + S +NG A +K+R+ L++TDI+MP +DG Sbjct: 4 MLIIEDDDIIRRGIVKIVSKMDLPISSIEEASNGQEALEKIRQLVPELIITDIMMPFLDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L ++ E + + + I+GF + ++ A + L KP L +N+++ Sbjct: 64 LKLLKQIREWELPSRTIIISGFDEFSYAQEAIAYGVSAYLLKPVKKDKLYQVLNKMI 120 >gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ ED+D +R F + L +AGYEVV G A P F + + D++MP MD Sbjct: 2 KRILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ RR E + + ++ +T + + ++KPF +LV V+ L Sbjct: 62 GFEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDAL 118 >gi|77919590|ref|YP_357405.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545673|gb|ABA89235.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter carbinolicus DSM 2380] Length = 477 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 57/105 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+A+D++ +R L KAL K G+ V +G A + + L + DI MP++ G+ Sbjct: 4 QRILVADDEESIRWVLRKALTKQGFTVDLAADGEEAKTFFKRRQYDLAILDIKMPDLSGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 EL R E P++ V+ IT +++ ++ L+KPF L Sbjct: 64 ELLRYFQEQRPEMLVIIITAESSMKNAVEAMKLGAYDYLTKPFDL 108 >gi|317037824|ref|XP_001402418.2| histidine kinase G2 [Aspergillus niger CBS 513.88] Length = 652 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 ++ILL ED+ +R L + L +G++V +NG A D ++++ F +L D VMP MDG Sbjct: 528 RRILLVEDNVINKRILSRKLQTSGFQVSEASNGQEAVDAIQQQGRFDCVLMDQVMPIMDG 587 Query: 62 IELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +R +LD + + I G A A + A ++ KP+ + DL+ + +L Sbjct: 588 TTASRTIRQLDGPMAQVPILGVTANVRTAQKDEMLAAGMNDIIYKPYKMPDLIERIKQL 646 >gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 223 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ IL+ EDD D+ R L L +AG+ V +C G VRE L++ D+ +P++ G Sbjct: 4 SKHILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGLPDLSG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ARR + ++ +T VA + L+KPFH +L+ + L + Sbjct: 64 AEIARRVRKTS-STPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQLRHQ 122 Query: 122 N 122 N Sbjct: 123 N 123 >gi|262408078|ref|ZP_06084626.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645070|ref|ZP_06722796.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|262354886|gb|EEZ03978.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639576|gb|EFF57868.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1329 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+D++R +L+ +L Y V +C NG A ++E L+L+DI+MPEM G Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEALIIIKEYWPELVLSDIMMPEMRGD 1121 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D+++ I AL ++N + L KPF ++ L + L Sbjct: 1122 EL---CVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANL 1178 Query: 118 L 118 L Sbjct: 1179 L 1179 >gi|197106067|ref|YP_002131444.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196479487|gb|ACG79015.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 662 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 4/104 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDG 61 ++LLAEDD + + L G++VV + A A ++ P LLLTD++MP +M+G Sbjct: 541 RVLLAEDDAQVAELVEALLTDLGHQVVRAEDAAQALAVLKSGRPADLLLTDLIMPGDMNG 600 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++LAR A L P L V+ +G+ AL + AP +L KP+ Sbjct: 601 VDLAREAVRLRPGLPVILSSGYTGEALEAAAGAP--WPMLKKPY 642 >gi|218961907|ref|YP_001741682.1| Response regulator [Candidatus Cloacamonas acidaminovorans] gi|167730564|emb|CAO81476.1| Response regulator [Candidatus Cloacamonas acidaminovorans] Length = 519 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D+ D+ + I L + Y V +CNNG A +KV E + L++ D +MP +DG+ Sbjct: 5 QILWVDDEIDLLKPFILFLEERKYNVETCNNGTDAIEKVVENKYDLVILDEMMPGLDGLA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++P L ++ +T A L + A + + L KP + ++ + ++ Sbjct: 65 TLQEIKRINPALPIVMVTKSEAEGLMDKAIASQISDYLIKPINPNQIIMAIKKIF 119 >gi|218780097|ref|YP_002431415.1| response regulator receiver sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761481|gb|ACL03947.1| response regulator receiver sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 407 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +D+D R+ L K L + EV +G SA + ++ P ++++ D+ MP MDG+E Sbjct: 8 KVLLVDDEDAFRQALAKRLERRRMEVFQAADGNSALEALKAFPANVVVMDVKMPGMDGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 PD +V+ +TG AAV L KP DL+N++ + Sbjct: 68 TMACIKRDFPDTEVILLTGHAAVEDGIAGIRAGAFDYLQKPVETEDLLNKIRQ 120 >gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CMC 3f] gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CMC 3f] Length = 248 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG EL Sbjct: 24 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 83 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ + +P++ ++ +T + D + KPF R+L + LL Sbjct: 84 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLL 137 >gi|117617735|ref|YP_857328.1| transcriptional activator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559142|gb|ABK36090.1| transcriptional activator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 447 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ +R L+ L GYE ++G A + + F ++++DI M MDG+ Sbjct: 5 RILVVEDDNGLREALVDTLLLGGYECREVDSGERALLALSRQSFDMVISDIQMGGMDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + P + V+ +T +A + + L+KPF L+N+V+R Sbjct: 65 LLANIRQQYPQVPVLLMTAYANIDGAVRAMREGAIDYLAKPFSPEVLLNQVSR 117 >gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1293 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ R + + L + GY+ N+G + + +PF L+L D+ MP++DG+E Sbjct: 1172 KVLIAEDNAVNRVVMSRMLERLGYQPHLANDGPETLEAILNQPFDLVLMDVQMPKLDGLE 1231 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 + R P + I A A D A A + LSKP DLV+ + R+ Sbjct: 1232 VTRAVRRRLPLGQQPIIVALTANATREDRTACLEAGMDDFLSKPIRPGDLVHLLERV 1288 >gi|257094697|ref|YP_003168338.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047221|gb|ACV36409.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 122 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 72/128 (56%), Gaps = 14/128 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+A+D+ ++ + L + G+EV+ +G A +VR E L+L D++MP M+ Sbjct: 1 MSKKILIADDEQNIVISIEFLLRREGFEVLVAGDGEEALARVRAERPDLVLLDVMMPRMN 60 Query: 61 GIELARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVN 112 G ++ +A DPDL +++ +T A D+ K + ++KPF ++L+ Sbjct: 61 GFDVC-QALRADPDLSGTRILMLT-----AKGRDTEVSKGLGLGADGYMTKPFSTKELLA 114 Query: 113 EVNRLLTI 120 EV +LL + Sbjct: 115 EVRKLLGM 122 >gi|240139593|ref|YP_002964069.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens AM1] gi|240009566|gb|ACS40792.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens AM1] Length = 622 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 +IL+ +DD+++R L GY +G +A D + + E F L++ D+ MP M G+ Sbjct: 508 RILVVDDDEEVRHVTASFLSDFGYSETEAADGHTALDLMEKGERFDLVVADLAMPGMTGV 567 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA E + V+ +TG A P++ V++KPF +L V++LL Sbjct: 568 ELAAAIRERFSGVPVLLLTGHAEAV-----QIPEDLPVMTKPFASAELAARVSQLL 618 >gi|163852260|ref|YP_001640303.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|218531018|ref|YP_002421834.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|163663865|gb|ABY31232.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|218523321|gb|ACK83906.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 622 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 +IL+ +DD+++R L GY +G +A D + + E F L++ D+ MP M G+ Sbjct: 508 RILVVDDDEEVRHVTASFLSDFGYSETEAADGHTALDLMEKGERFDLVVADLAMPGMTGV 567 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA E + V+ +TG A P++ V++KPF +L V++LL Sbjct: 568 ELAAAIRERFSGVPVLLLTGHAEAV-----QIPEDLPVMTKPFASAELAARVSQLL 618 >gi|153824995|ref|ZP_01977662.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MZO-2] gi|149741320|gb|EDM55354.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MZO-2] Length = 450 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +GASA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQNFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|158522405|ref|YP_001530275.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158511231|gb|ABW68198.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 126 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++ +D++ + + L AL K G V + +G +A + ++PF +++TDI M ++DG+E Sbjct: 7 RIMVIDDENIVGKRLKPALEKTGDVVETFEDGETALARFEKQPFDIVVTDIRMEKIDGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNRLL 118 + + + KV+ ITG+A V + ++ + ++KPF LR ++ +R L Sbjct: 67 ILEQILAMSRQTKVILITGYATVEIAREALSKGAFDFIAKPFKPADLRAIIERASREL 124 >gi|219848052|ref|YP_002462485.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542311|gb|ACL24049.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 643 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 12/124 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNN---GAS-AYDKVREEPFSLLLTDIVMP 57 ++ +L+ +D+ + + AL GY V+ + G S A D RE+P LL+ D+++P Sbjct: 525 HETVLVVDDEPSVLYLITSALRLYGYRVLEATDPQHGISLAVD--REQPIDLLIADVMLP 582 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNR 116 + G EL R P+L V+FI+ A DS + P NA +L KPF L L+ +V Sbjct: 583 GITGDELYRSLAAQQPNLHVLFIS-----AQTDDSYDLPPNAPLLMKPFTLNQLLQKVRA 637 Query: 117 LLTI 120 L + Sbjct: 638 ALMV 641 >gi|319788476|ref|YP_004147951.1| response regulator receiver protein [Pseudoxanthomonas suwonensis 11-1] gi|317466988|gb|ADV28720.1| response regulator receiver protein [Pseudoxanthomonas suwonensis 11-1] Length = 120 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 7/114 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 K+LL ED ++R L L G EV + ++G +A + E P +L +DI MP +DG+ Sbjct: 6 KVLLVEDQFELRDLLCDVLQDMGMEVRTADDGNAALRILEEWPCDVLFSDIHMPGGVDGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL---RDLVNE 113 LA E P+ +V+ +G L P P + L KPF L DL+ E Sbjct: 66 ALAATLLERHPEARVILASGHPRYQLAP---LPAGTRFLQKPFRLGQFTDLIRE 116 >gi|254562007|ref|YP_003069102.1| sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens DM4] gi|254269285|emb|CAX25251.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens DM4] Length = 622 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 +IL+ +DD+++R L GY +G +A D + + E F L++ D+ MP M G+ Sbjct: 508 RILVVDDDEEVRHVTASFLSDFGYSETEAADGHTALDLMEKGERFDLVVADLAMPGMTGV 567 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA E + V+ +TG A P++ V++KPF +L V++LL Sbjct: 568 ELAAAIRERFSGVPVLLLTGHAEAV-----QIPEDLPVMTKPFASAELAARVSQLL 618 >gi|189466394|ref|ZP_03015179.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM 17393] gi|189434658|gb|EDV03643.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM 17393] Length = 1404 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ + Y V+ NGA A D + + +++D++MP MDGIEL Sbjct: 1153 ILVVEDNADMRGY-IRSILRDYYNVLEATNGAEALDVLNNQSVDFIISDLMMPVMDGIEL 1211 Query: 65 ARRATE 70 +RR E Sbjct: 1212 SRRVKE 1217 >gi|148256144|ref|YP_001240729.1| hypothetical protein BBta_4799 [Bradyrhizobium sp. BTAi1] gi|146408317|gb|ABQ36823.1| hypothetical protein BBta_4799 [Bradyrhizobium sp. BTAi1] Length = 867 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 3/110 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-MD 60 ++IL+ ED+ + L GY V N A+A ++ R EP +LLLTDIV+P+ + Sbjct: 740 ERILVVEDNPLVGAMASTMLSSMGYSPVVVVNAAAAIAELERPEPVALLLTDIVLPDGVT 799 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GI+LAR+ P+L ++F++GFA +L P+ + K+L+KPF L L Sbjct: 800 GIDLARQVRHRWPELPIVFMSGFADPSLVPE-DFRATTKLLAKPFRLGQL 848 >gi|114571083|ref|YP_757763.1| two component sigma54 specific Fis family transcriptional regulator [Maricaulis maris MCS10] gi|114341545|gb|ABI66825.1| two component, sigma54 specific, transcriptional regulator, Fis family [Maricaulis maris MCS10] Length = 487 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 45/86 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +DD RR L + K GY + +G +A D+V E ++L D++MP MD Sbjct: 1 MVKSVLIVDDDPTQRRLLQAVIEKQGYRAETAESGEAALDRVAEPGIDVMLLDLIMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+E PDL V+ +T + Sbjct: 61 GMETLEALKRKQPDLPVIVLTASGGI 86 >gi|86148372|ref|ZP_01066665.1| Response regulator [Vibrio sp. MED222] gi|85833855|gb|EAQ52020.1| Response regulator [Vibrio sp. MED222] Length = 367 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +NQK ++L +DD RR L K GY+VV NG A K+R+ L++ D+ MP + Sbjct: 17 LNQKCVMLVDDDPIFRRITSAYLDKIGYKVVEAENGLDALQKLRDSAPDLIVCDLSMPIL 76 Query: 60 DGIELARRATELDPDLKVMFITG 82 DGIEL + P L ++ ++G Sbjct: 77 DGIELVEELSLEYPSLPMIVVSG 99 >gi|332185368|ref|ZP_08387116.1| response regulator [Sphingomonas sp. S17] gi|332014346|gb|EGI56403.1| response regulator [Sphingomonas sp. S17] Length = 122 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL +D +R + AL AGY V ++GA K F L++TD+ MP MD Sbjct: 1 MTASILTVDDSASLRMAIRIALTGAGYAVTEASDGAEGLAKATATRFDLIVTDLNMPNMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + R R + ++F+T + A+ + A L KPF L+ ++L Sbjct: 61 GLSMIRALRQQPAQAGVPIIFLTTESDDAMKAQAKAAGATGWLVKPFQPEQLIRVAQKVL 120 >gi|322419999|ref|YP_004199222.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320126386|gb|ADW13946.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 457 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ MR FL L GY V N A + E+ + ++++D+ MP + Sbjct: 1 MRARILVVDDELSMREFLAILLDGEGYLVDQAENAEHALSCMAEQHYEMVISDVSMPGLG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIEL R PD V+ IT F ++ + KPF + ++ Sbjct: 61 GIELLTRIKAESPDTAVLMITAFTTAEQAVEAMKLGAYDYIGKPFKVEEV 110 >gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1] gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CC 2a] gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides xylanisolvens SD CC 1b] gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1] gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CC 2a] gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides xylanisolvens SD CC 1b] Length = 228 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ + +P++ ++ +T + D + KPF R+L + LL Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|237753146|ref|ZP_04583626.1| DNA-binding response regulator [Helicobacter winghamensis ATCC BAA-430] gi|229375413|gb|EEO25504.1| DNA-binding response regulator [Helicobacter winghamensis ATCC BAA-430] Length = 220 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 54/111 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD ++ + + L + GY VV C+NG A +K E F +LL D+++ + Sbjct: 1 MKAKVLLLEDDVALQEIIAECLEEEGYFVVCCDNGLEAANKAYEMDFDILLLDVMVAGQN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G + R E D +FIT ++ L KPF L +L+ Sbjct: 61 GFKALREIRESGKDTPAIFITALNSLKDLEVGFKSGCDDYLRKPFELSELL 111 >gi|170767484|ref|ZP_02901937.1| sigma-54 dependent response regulator AtoC [Escherichia albertii TW07627] gi|170123818|gb|EDS92749.1| sigma-54 dependent response regulator AtoC [Escherichia albertii TW07627] Length = 461 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGHTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRIPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|74055031|gb|AAZ95837.1| FlrC [Aeromonas hydrophila] Length = 447 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ +R L+ L GYE ++G A + + F ++++DI M MDG+ Sbjct: 5 RILVVEDDNGLREALVDTLLLGGYECREADSGERALLALSRQSFDMVISDIQMGGMDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + P + V+ +T +A + + L+KPF L+N+V+R Sbjct: 65 LLANIRQQYPQVPVLLMTAYANIDGAVRAMREGAIDYLAKPFSPEVLLNQVSR 117 >gi|332083895|gb|EGI89108.1| transcriptional regulatory protein zraR domain protein [Shigella boydii 5216-82] Length = 105 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|329928017|ref|ZP_08282021.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328938121|gb|EGG34518.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 268 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+LL ED+ +R + I A + G++V NGA A + +R P L+LTDIVMPEMD Sbjct: 3 KVLLVEDEVFVRESVREIIAWEELGFKVAGEAGNGAEALEMIRSNPPDLVLTDIVMPEMD 62 Query: 61 GIELARRATE 70 G+EL RR E Sbjct: 63 GVELLRRTRE 72 >gi|308273637|emb|CBX30239.1| hypothetical protein N47_D30480 [uncultured Desulfobacterium sp.] Length = 964 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ ILL +D+ ++ K L GY V N A + +E F L++TD+ MP M Sbjct: 808 SENILLVDDEKELASVEKKMLEVLGYHVTKTTNAMDALEIFKENADIFDLVITDMTMPFM 867 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L++ + P++ V+ TGF + S + + KP+ +R L + + R+L Sbjct: 868 TGIQLSKEIFRIRPEIPVVLCTGFNEHISSEKSFEIGISDFIMKPYDMRKLGSSIRRVL 926 >gi|302566228|pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain gi|302566229|pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain Length = 122 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++P D Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + E + V+ +T + V L KPF LR+L+ V L+ Sbjct: 61 GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|301060210|ref|ZP_07201077.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300445722|gb|EFK09620.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 680 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++ILL +D +++ + L + GY+V + + A + RE P F L+ TD+ MP M Sbjct: 555 DERILLVDDRENLLTVEKELLERLGYQVTAVMDPVEALEIFREHPYEFDLVYTDMTMPHM 614 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L++ E+ P+L ++ TG + + + L KP L DL + + +L Sbjct: 615 TGLTLSKEILEIRPELPIIIYTGLGDLVDAEEIKRSGISAFLKKPILLEDLASTIREVL 673 >gi|300869422|ref|ZP_07114007.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria sp. PCC 6506] gi|300332552|emb|CBN59205.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria sp. PCC 6506] Length = 237 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ + L GY +V NG A + E +L+L DI MP MDG+E Sbjct: 119 ILLAEDNEANISTVSSYLKAKGYRIVLAKNGEEAIALAKSENPNLILMDIQMPGMDGLE- 177 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLLT 119 A + LDP L + I A+A++ D + A +SKP L+ L + +LL Sbjct: 178 AMQQIRLDPKLVKVPIIALTALAMSSDRDRCLAAGANDYISKPVKLKQLAATIQQLLA 235 >gi|261410009|ref|YP_003246250.1| two component AraC family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286472|gb|ACX68443.1| two component transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10] Length = 516 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 37/53 (69%) Query: 31 SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 S N+G A +K+REEP LL+TDI+MP M+G+EL ++ + P K + ++G+ Sbjct: 33 SANDGLQALEKLREEPVDLLITDIMMPRMNGLELIKKVKAMHPRTKFIVLSGY 85 >gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49] Length = 239 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L GY+V++ NG +K ++E L++ D++MPEMDGIE Sbjct: 19 KILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEKPHLIILDVMMPEMDGIE 78 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + + P+L IT A + A +A ++KP + L+++V LL Sbjct: 79 ACEKIRSI-PELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKVKALL 135 >gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS [Shewanella putrefaciens 200] Length = 1234 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV +NG A D + PF +L DI MP MDG+ Sbjct: 1112 VLLVEDNFINQQVATELLKSAGYEVVLADNGQVALDIIDSRPFDAVLMDIQMPVMDGLTA 1171 Query: 65 ARRATE-LDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 AR E P +L ++ +T A S A ++KP L +L +N + KN Sbjct: 1172 ARALRERYSPEELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIQHKN 1231 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N + L+ +D+ + + +EV + +GA A K+ +P LLL D +MPEMDG Sbjct: 966 NLRTLVVDDNPTALQIYSAVMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDG 1025 Query: 62 ------IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+ LD ++ +T ++A L + + VL KPF L +E+ Sbjct: 1026 SDVISAIDTMVAEGRLDKRPVIIMMTAYSAEPLQYEVESANVFAVLQKPFKASSLFDEI 1084 >gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1403 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED ++ + L K GY NG ++++P+ L+L D+ MPEMDG+E Sbjct: 1131 RILLAEDTIVNQKVALLMLQKIGYSADVVTNGVEVLKALQKQPYDLVLMDVHMPEMDGLE 1190 Query: 64 LARRATELDPDLKVMF---ITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 ARR + + KV F I A A+ D A + +SKP L+ L +++ Sbjct: 1191 TARRICQ---EWKVGFRPHIIAITANAMRGDREVCLAAGMDDYISKPIQLQKLAQALSK 1246 >gi|301165551|emb|CBW25122.1| chemotaxis protein cheY homologue [Bacteriovorax marinus SJ] Length = 131 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 61/114 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D D R LI+ L K G+ VV + A+ + +L L DIVMPE+ GIE Sbjct: 10 KIVVVDDSDLSRNSLIEILEKNGFNVVGQASSANEAVPLLGTGANLFLIDIVMPEVSGIE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L++ +E K++ ++ ++ +S + LSKPF +DL+ V ++ Sbjct: 70 LSKIISENSKQAKIIMMSSLNMESIIIESISNGAVDFLSKPFSEKDLIRSVEKI 123 >gi|302382085|ref|YP_003817908.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192713|gb|ADL00285.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 1216 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDG 61 Q +LL EDD + + LG G EV + G A + F ++L+D+VMP M G Sbjct: 1100 QSLLLVEDDTSVAVIAVDLLGGMGLEVEAVETGPDALAALARRRFDIMLSDVVMPGGMTG 1159 Query: 62 IELARRATELDPDLKVMFITGFAA 85 ELAR+A + P ++++ +G+A Sbjct: 1160 FELARQAADQYPGMRIVLTSGYAG 1183 >gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2] gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22] gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2] gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22] gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2] Length = 228 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ + +P++ ++ +T + D + KPF R+L + LL Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W] gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W] Length = 242 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L + F++ Sbjct: 76 CRRIRE-KHSLPITFLSA 92 >gi|323341358|ref|ZP_08081602.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091235|gb|EFZ33863.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 120 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR L L K GYEV NG A+DK + E L+ DI MPE+ Sbjct: 1 MAKRILIVDDAVFMRMKLKDILEKNGYEVAGEAQNGQEAFDKYQAEKPDLVTMDITMPEV 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG++ + + D + KV+ + + D+ + KPF ++ +++ L+ Sbjct: 61 DGLQALKMIKQADANAKVVMCSAMGQQGMVMDAIKSGAVDFIVKPFDTERVIQSLDKALS 120 >gi|319951942|ref|YP_004163209.1| two component, sigma54 specific, transcriptional regulator [Cellulophaga algicola DSM 14237] gi|319420602|gb|ADV47711.1| putative two component, sigma54 specific, transcriptional regulator [Cellulophaga algicola DSM 14237] Length = 387 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 9/119 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +IL+ ED+ +RR L+K L + Y V +G + V++E + L+L DI MP+MD Sbjct: 2 SRILVIEDEAAIRRVLVKILSEESDTYTVEEAEDGLKGLEAVKKEDYDLVLCDIKMPKMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E+ A ++ P++ + I+G + ++ +SKP L NRLLT Sbjct: 62 GVEVLEAAKKIKPEIPFIMISGHGDLDTAVNTMRLGAFDYISKPPDL-------NRLLT 113 >gi|303235984|ref|ZP_07322587.1| PglZ domain protein [Prevotella disiens FB035-09AN] gi|302483857|gb|EFL46849.1| PglZ domain protein [Prevotella disiens FB035-09AN] Length = 523 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L +D+ ++ + I L K GYEVV+ +NGA A D+ R + F L+L D MP + G Sbjct: 3 NGLLLWVDDEIELLKAHIIFLEKKGYEVVTVSNGADAIDQFRTQTFDLVLLDEQMPGLSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E ++ E+ P ++ +T + + K A L KP VN LLT+K Sbjct: 63 LETLQKLKEIQPATPIVMVTKSEEEDIMNQAIGSKIADYLIKP------VNPSQILLTLK 116 >gi|302185251|ref|ZP_07261924.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae 642] Length = 445 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 EL + P + V IT V Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNV 88 >gi|150008119|ref|YP_001302862.1| two-component system sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149936543|gb|ABR43240.1| two-component system sensor kinase/response regulator, hybrid [Parabacteroides distasonis ATCC 8503] Length = 911 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R +L L + V+ NGA A D + +E SL+++D++MPEM+G EL Sbjct: 660 ILIVEDDWDIRAYLQHEL-SGNFNVLVAENGAKALDILLKENVSLVVSDVMMPEMNGFEL 718 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLRDLVNEVNRLLT 119 RR + D+ + I AL+ DS + + KPF++ + + +LL Sbjct: 719 CRR---VKSDMVLSHIPVILLTALSDDSQRLYGFEGGADEYIQKPFNIEIVKLRIIKLLE 775 Query: 120 IKN 122 +N Sbjct: 776 ERN 778 >gi|103486943|ref|YP_616504.1| two component, sigma54 specific, Fis family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977020|gb|ABF53171.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sphingopyxis alaskensis RB2256] Length = 445 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 56/117 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q IL +DD +R + L AG V + + S ++ + +++TDI MP MDG Sbjct: 7 EQTILFVDDDAALREANAQTLDLAGLAVETFADAQSVLPRIAADFAGIVITDIRMPGMDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +DPD+ V+ ITG A V + + L+KPF LV R L Sbjct: 67 LELRAAIHAIDPDIPVVLITGHADVTMAVRALHDGAFDFLAKPFAADHLVGVARRAL 123 >gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 234 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTYVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|332291405|ref|YP_004430014.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332169491|gb|AEE18746.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 227 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + + ++L G+ V C +G A ++ + + +L+ D++MP+ DG + Sbjct: 8 ILLAEDEPALGLIVKESLESRGFNVTLCTDGVQAINQYQLKKPDILVLDVMMPKKDGFTV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 A+ E D ++ ++F+T + A + + L KPF + +L+ + LL K Sbjct: 68 AKEVREQDDEIPIIFLTAKSQTADVVEGFSIGGNDYLKKPFSVEELIVRIQNLLQRKT 125 >gi|300702723|ref|YP_003744323.1| sensor protein [Ralstonia solanacearum CFBP2957] gi|299070384|emb|CBJ41679.1| Sensor protein [Ralstonia solanacearum CFBP2957] Length = 994 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+AED R L K L GY V +GA+A ++ E F LLTD MP ++ Sbjct: 730 LGAHILVAEDHPINRELLAKQLRLLGYRVTLAEDGAAALQRLSEARFDALLTDCCMPRLN 789 Query: 61 GIELARRATELD------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G ELARR + + P L ++ IT + A + KP L L + Sbjct: 790 GFELARRIRQREQHTPGGPRLAILAITATTLAEEHARCRAVGMDDCVLKPTTLATLQEAL 849 Query: 115 NRLLTIK 121 +RL I+ Sbjct: 850 SRLWHIE 856 >gi|260173134|ref|ZP_05759546.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1392 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD+D+R+FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1135 RKILIIEDDNDIRQFLKEEIG-AYFEVEVAADGTSGFEKARSYDADLIICDVLMPGMTGF 1193 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---------AKVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ + KPF ++ L+ Sbjct: 1194 EVTKK-------LKSDFDTSHIPIILLTALNSPEKYLEGIESGADAYIPKPFSIKLLLAR 1246 Query: 114 VNRLL 118 V +L+ Sbjct: 1247 VFQLI 1251 >gi|218782892|ref|YP_002434210.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218764276|gb|ACL06742.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 477 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ + R K L ++ YE+ NG A + + +E F L++TD+ M M G+E Sbjct: 7 KILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMNSMGGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + P +V+ ITG+A+V+ + L KPF +L V + L Sbjct: 67 VLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQAL 121 >gi|320526762|ref|ZP_08027952.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320132730|gb|EFW25270.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 226 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + K L GYEV C +G +A++ +E + L++ D+ +P MDG+E Sbjct: 2 RLLVVEDEITLCETIAKGLRLDGYEVDICYDGGTAWNMAMDESYDLIILDLNLPVMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL---VNEVNRLLTI 120 + + D + V+ ++ + D L KPFH +L V + R T+ Sbjct: 62 VLHNIRKEDSETAVLILSARGHLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRTV 121 Query: 121 KN 122 +N Sbjct: 122 QN 123 >gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] Length = 231 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ ED+ + FL++ L + GY V +G + + E + L++ D +P D Sbjct: 1 MSSRILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVED 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L RR + + V+F+T AV L+KPF +L+ V LL Sbjct: 61 GIQLLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALL 118 >gi|86359025|ref|YP_470917.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86283127|gb|ABC92190.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 444 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 62/117 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP MDG Sbjct: 3 DAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L ++ E+D ++ V+ +TG V L + + KPF L + R + Sbjct: 63 MTLMQKIREIDQEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAM 119 >gi|315921409|ref|ZP_07917649.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313695284|gb|EFS32119.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1436 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD+D+R+FL + +G A +EV +G S ++K R L++ D++MP M G Sbjct: 1179 RKILIIEDDNDIRQFLKEEIG-AYFEVEVAADGTSGFEKARSYDADLIICDVLMPGMTGF 1237 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---------AKVLSKPFHLRDLVNE 113 E+ ++ LK F T + L N+P+ + KPF ++ L+ Sbjct: 1238 EVTKK-------LKSDFDTSHIPIILLTALNSPEKYLEGIESGADAYIPKPFSIKLLLAR 1290 Query: 114 VNRLL 118 V +L+ Sbjct: 1291 VFQLI 1295 >gi|294806721|ref|ZP_06765549.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294446075|gb|EFG14714.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1212 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+D++R +L+ +L Y V +C NG A ++E L+L+DI+MPEM G Sbjct: 1035 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEALIIIKEYWPELVLSDIMMPEMRGD 1093 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D+++ I AL ++N + L KPF ++ L + L Sbjct: 1094 EL---CVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANL 1150 Query: 118 L 118 L Sbjct: 1151 L 1151 >gi|237709609|ref|ZP_04540090.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237725248|ref|ZP_04555729.1| two-component system response regulator [Bacteroides sp. D4] gi|265754239|ref|ZP_06089428.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|229436514|gb|EEO46591.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229456245|gb|EEO61966.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263234948|gb|EEZ20503.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 460 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L LGK G+ V + ++ A A ++ +P+ L+L+D+ +P+ D Sbjct: 1 MPHSILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLPDQD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI L E ++ ++ +TG+A + + + +SKP +L+ ++N L Sbjct: 61 GIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPVQPDELLKKINEALQN 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|289810865|ref|ZP_06541494.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 147 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L++ DI MP MDG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R + L V+ +T +AVA L KPF L +L + LL Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALL 116 >gi|195977456|ref|YP_002122700.1| DNA-binding response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974161|gb|ACG61687.1| DNA-binding response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 228 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ ++ + L +AGY V + ++G+ A + ++ + L+++D++MP MD Sbjct: 1 MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIISDVMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRL 117 G + PD +FIT A PD S + +SKPF R+LV V + Sbjct: 61 GYDFIGEVLLEKPDQPFLFIT---AKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNI 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille] gi|151282803|gb|ABR91213.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille] Length = 121 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ ++ +L AGY+V +G DK + + F L+LTD MP MD Sbjct: 1 MAKTILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAKTQVFDLVLTDQNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R RA + ++ +T ++ + A L KPF + L V +++ Sbjct: 61 GFSLIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120 >gi|148262168|ref|YP_001228874.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146395668|gb|ABQ24301.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 452 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GYEV + ++G + SL++TD+ M MD Sbjct: 1 MKAKILVIDDDSSLRRVLEYNLQEEGYEVQAASSGEEGLYLFGQSRPSLVITDMKMSGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G+ + + E P+ V+ IT F V + ++ ++KPF+ Sbjct: 61 GLMVLKSVKERSPETLVIIITAFGTVDVAVEAMKAGAYDYITKPFN 106 >gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4] Length = 228 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ + +P++ ++ +T + D + KPF R+L + LL Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|213865133|ref|ZP_03387252.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 177 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 59/107 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L++ DI MP MDG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF L +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEEL 108 >gi|254469521|ref|ZP_05082926.1| nitrogen regulation protein [Pseudovibrio sp. JE062] gi|211961356|gb|EEA96551.1| nitrogen regulation protein [Pseudovibrio sp. JE062] Length = 479 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY V +N + + V L+++D+VMP+ + ++ Sbjct: 6 ILVADDDSAIRTVLNQALSRAGYTVRLTSNATTLWRWVSSGEGDLVISDVVMPDENAFDV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L P+L V+ ++ ++ + L KPF L++L V R L Sbjct: 66 LPRIRKLRPELPVIIMSAQNTFMTAIKASEQGAYEYLPKPFDLKELTGIVGRAL 119 >gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] Length = 964 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 4/111 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED + R L L K G V +NG A D+++ E L+L D+ MPEMDG+E Sbjct: 719 KILIAEDIETNRFILRSMLIKLGMSVFEAHNGLEALDQLQRERPDLVLMDVSMPEMDGLE 778 Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 R+ +L D L I A + D++ K A + L+KPF +L Sbjct: 779 ATRQIRKLADTALASTPIIATTAHVIGVDADKCKEAGMDGFLAKPFEQAEL 829 >gi|145298504|ref|YP_001141345.1| two-component system flagellar response regulator FlrC [Aeromonas salmonicida subsp. salmonicida A449] gi|142851276|gb|ABO89597.1| two-component system flagellar response regulator FlrC [Aeromonas salmonicida subsp. salmonicida A449] Length = 447 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ +R L+ L GYE ++G A + + F ++++DI M MDG+ Sbjct: 5 RILVVEDDNGLREALVDTLLLGGYECREADSGERALLALSRQSFDMVISDIQMGGMDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + P + V+ +T +A + + L+KPF L+N+V+R Sbjct: 65 LLAAIRQQYPQIPVLLMTAYANIDGAVRAMREGAIDYLAKPFSPEVLLNQVSR 117 >gi|119475564|ref|ZP_01615917.1| two-component response regulator NtrC [marine gamma proteobacterium HTCC2143] gi|119451767|gb|EAW33000.1| two-component response regulator NtrC [marine gamma proteobacterium HTCC2143] Length = 482 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L KAL +AG + ++G + + +R+ +++DI MP MDG+EL Sbjct: 11 VWIVDDDRSIRWVLEKALNQAGITTQTFDSGETILNSLRQNTPDAIISDIRMPGMDGLEL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + E PDL V+ T + + S + L KPF + D V R L N Sbjct: 71 LGKINETHPDLPVIITTAHSDLDSAVASYQGGAFEYLPKPFDIDDAVAMTERALLHAN 128 >gi|28868051|ref|NP_790670.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tomato str. DC3000] gi|28851287|gb|AAO54365.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tomato str. DC3000] Length = 446 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVN 117 >gi|83593569|ref|YP_427321.1| response regulator receiver domain-containing protein [Rhodospirillum rubrum ATCC 11170] gi|83576483|gb|ABC23034.1| Response regulator receiver domain protein (CheY) [Rhodospirillum rubrum ATCC 11170] Length = 130 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ +DD ++R+ + + + G+ VV +G + E F L+++D+ MP++DG Sbjct: 4 GKTVLIVDDDTNVRKAIRLGVEELGWAVVEACDGEEGLRLLGERMFDLVVSDVWMPKVDG 63 Query: 62 IELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 I + A E+ P LKV+ ++ G A AL+ A +L KPF +L+ +++ L+ Sbjct: 64 ISFLKHAMEIRPGLKVLSVSGGGTAPAALSLKMTEMYGASDILFKPFTPNELLGKLSALM 123 >gi|85703239|ref|ZP_01034343.1| sensory box sensor histidine kianse/response regulator [Roseovarius sp. 217] gi|85672167|gb|EAQ27024.1| sensory box sensor histidine kianse/response regulator [Roseovarius sp. 217] Length = 765 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 +LL ED+ +R F +AL G+ V+ + A + + + + +TD+VMP +DG Sbjct: 649 VLLVEDEAPVRAFASRALQLRGFTVMEAESAEDALEILEDATLHVDVFVTDVVMPGIDGP 708 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 RRA P +V+F++G+A N+ L KPF L +L V R Sbjct: 709 GWVRRALTSRPKARVVFMSGYAEETFGDTQARIPNSVFLPKPFSLNELTEIVLR 762 >gi|84496371|ref|ZP_00995225.1| response regulator domain, but no DNA binding domain-containing protein [Janibacter sp. HTCC2649] gi|84383139|gb|EAP99020.1| response regulator domain, but no DNA binding domain-containing protein [Janibacter sp. HTCC2649] Length = 122 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 12/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++A+DD D+R + L ++GY V SC+NG A ++R +P +L + D++MP + GI++ Sbjct: 3 VVVADDDADIRDLVELKLSQSGYAVRSCSNGVDALAEIRRDPPALAVLDVMMPGLSGIDV 62 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 R RA + ++V+ +T A + D++ L KPF R+LV+ + L Sbjct: 63 LREIRADDALGGVRVVLLT-----ARSRDTDVDMGFSTGADDYLIKPFSPRELVHRIAGL 117 Query: 118 LT 119 + Sbjct: 118 IA 119 >gi|148255093|ref|YP_001239678.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407266|gb|ABQ35772.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 951 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 8/115 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGIE 63 +LL +D+D +R + L + G+EVV + A + F L++TD +MP M G E Sbjct: 841 VLLVDDEDLVRLSTAEMLIELGHEVVEAGSAEEALRLLNGGLFPDLVVTDHLMPGMSGTE 900 Query: 64 LARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 LARR P++KV+ ++G+A AV + PD P+ L+KPF +L ++ L Sbjct: 901 LARRIQAERPNVKVLIVSGYAEAVGIAPD--LPR----LTKPFRNLELAASLDSL 949 >gi|307154499|ref|YP_003889883.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7822] gi|306984727|gb|ADN16608.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7822] Length = 315 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD R L A+ + GY VV+ +G ++ ++L D VMPEMDG Sbjct: 15 ILVVDDDRSTRTLLKVAMEEEGYRVVTAKDGEECLNEYNRCQPDMVLLDAVMPEMDGFSC 74 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +R TE+ ++ ++ IT + A ++KP H L V RLLT Sbjct: 75 CKRLTEISQGHNIPILMITALDDQDSIDQAFACGAVDYITKPIHWAVLAQRVKRLLT 131 >gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1238 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D + PF +L DI MP MDG+ Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 AR E +L ++ +T A S A ++KP L +L +N + KN Sbjct: 1174 ARALRERFSADELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHKN 1233 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK------VMFI 80 +EV + +GA A K+ P LLL D +MPEMDG ++ + + + ++ + Sbjct: 991 FEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSDVVSAIDTMVAEGRLAKRPVIIMM 1050 Query: 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 T +AA L + ++ VL KPF L +E+ Sbjct: 1051 TAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|88604424|ref|YP_504602.1| response regulator receiver domain-containing protein [Methanospirillum hungatei JF-1] gi|88189886|gb|ABD42883.1| response regulator receiver domain protein (CheY-like) [Methanospirillum hungatei JF-1] Length = 143 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + L GYEV K+ E F+L L DI +P+M+G Sbjct: 2 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFDIKLPDMEGT 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL +A +L P +K + +TG+A++ + S NA +A ++ KP + RDL+ ++ L Sbjct: 62 ELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIM-KPVNPRDLLEKIKEKL 117 >gi|330878985|gb|EGH13134.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 446 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVN 117 >gi|329924373|ref|ZP_08279490.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328940724|gb|EGG37041.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 516 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 37/53 (69%) Query: 31 SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 S N+G A +K+REEP LL+TDI+MP M+G+EL ++ + P K + ++G+ Sbjct: 33 SANDGLQALEKLREEPVDLLITDIMMPRMNGLELIKKVKAMHPRTKFIVLSGY 85 >gi|294140201|ref|YP_003556179.1| flagellar regulatory protein C [Shewanella violacea DSS12] gi|293326670|dbj|BAJ01401.1| flagellar regulatory protein C [Shewanella violacea DSS12] Length = 453 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A YE V + A K++ E F L+++D+ M + GI Sbjct: 5 KLLLVEDDHPLREALVDTLLLAQYECVDVCSAEDAIIKLKAESFDLVISDVQMQGIGGIG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 L + L V+ +T +A + + NA K V L+KPF L+N+V+R L K Sbjct: 65 LLNYLKQNQAQLPVLLMTAYATI--DNAVNAIKLGAVDYLAKPFAPEVLLNQVSRYLKPK 122 >gi|258405057|ref|YP_003197799.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797284|gb|ACV68221.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 736 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 1/110 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 N+ ILL EDD +R ++ L + GY+V N A E LL TDIV+P+ + Sbjct: 613 NETILLVEDDQLLRELAVEMLEELGYKVFKAQNADEAITIFDELNSIDLLFTDIVLPDRN 672 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G ++ + ++KV++++G+ ++ K L KPF + +L Sbjct: 673 GRQVYDALIQKQKNIKVLYMSGYTQDVIDSHGILEKGVHFLQKPFSISEL 722 >gi|220926142|ref|YP_002501444.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950749|gb|ACL61141.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 699 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 IL+ +DD +R L G+ V+ +GA A + L++TD MP M G+E Sbjct: 584 ILVVDDDPLVRIGTAAMLEDLGHAVLEAPSGAEALTLLEGRTDIDLVVTDHAMPGMTGLE 643 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 LARR E+ P L V+ TGFA + + ++ P+ LSKPF +LV Sbjct: 644 LARRLREVCPQLPVILATGFAELPSDDEAAVPR----LSKPFSQEELV 687 >gi|213971046|ref|ZP_03399166.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tomato T1] gi|301384231|ref|ZP_07232649.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tomato Max13] gi|302059464|ref|ZP_07251005.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tomato K40] gi|302134994|ref|ZP_07260984.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924154|gb|EEB57729.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. tomato T1] Length = 446 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVN 117 >gi|167628800|ref|YP_001679299.1| sigma-54 dependent response regulator [Heliobacterium modesticaldum Ice1] gi|167591540|gb|ABZ83288.1| sigma-54 dependent response regulator [Heliobacterium modesticaldum Ice1] Length = 516 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDIVMPE 58 ++L+A+D++ MR FL AL +AG+ V + +G SA +K+ + P++L L D+ MP Sbjct: 6 RLLVADDEEAMRLFLSAALERAGHRVDAVEDGQSALEKIVAAERSKAPYALALIDLQMPR 65 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF----HLRDLVNEV 114 + G++L P L V+ +T ++ ++ A L KP HLR V+ V Sbjct: 66 LPGMDLLSHIRREWPRLPVIILTAHGSIPTAVEAMKLGAADFLVKPLPSPGHLRAAVSRV 125 >gi|158339630|ref|YP_001521019.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309871|gb|ABW31487.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 914 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 42/69 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D D R L+ L G+E+V G A ++++PF L++TD+ MP MDG Sbjct: 705 RRVLVVDDRWDNRSVLVSLLQPIGFEIVEAEEGQKALAVLQQQPFHLMITDLAMPVMDGF 764 Query: 63 ELARRATEL 71 EL R+ +L Sbjct: 765 ELLRQVQQL 773 >gi|157273298|gb|ABV27197.1| response regulator HsfA [Candidatus Chloracidobacterium thermophilum] Length = 480 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 51/106 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ MR L + GY NGA A + +R + F ++L+D+ MP + G EL Sbjct: 8 ILIVDDELSMRELLDHVFRREGYRTFIAENGAQALEALRGKVFDVVLSDVKMPRLSGTEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ PD V+ +T V ++ + KPF + +L Sbjct: 68 LHECRQISPDTVVILMTAHGTVEQAREAFKLGADDFIQKPFDIDEL 113 >gi|332876941|ref|ZP_08444694.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685049|gb|EGJ57893.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 249 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 47/81 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++ILL EDD + L L +G++VV NG ++K ++E F + + D++MP DG Sbjct: 14 NKRILLVEDDPNFGTVLKDYLVMSGFDVVLAKNGMEGFEKFKKETFDMCILDVMMPYKDG 73 Query: 62 IELARRATELDPDLKVMFITG 82 LA+ E + + ++F+T Sbjct: 74 FTLAKEIREKNEKIPIIFLTA 94 >gi|253699596|ref|YP_003020785.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251774446|gb|ACT17027.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 458 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 54/120 (45%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D++ +R L L GY V +G A E L+L DI MP+MD Sbjct: 1 MTETILIVDDEEGIRSSLAGILEDEGYRTVCAADGVEALALCARELPGLVLLDIWMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI+ +R E P L V+ ++G + S + KP L +V V L + Sbjct: 61 GIQTLQRLKESHPFLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALAM 120 >gi|297568910|ref|YP_003690254.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924825|gb|ADH85635.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 722 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL +D++ +R L G+EV++ +G A D V ++P ++ D+ MP MDG Sbjct: 592 ILLVDDEEMVRTTGATILRAKGFEVITAGDGREAVDIVAQQPERIECVVLDMNMPVMDGA 651 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + ++ PDL V+ +G+ A + + K A + KP+ + L+ + +++ Sbjct: 652 EAFQELRKIRPDLPVLLASGYNAQEIVQRFHGGKLAGFIQKPYQIEQLLGALQKIM 707 >gi|300778397|ref|ZP_07088255.1| sigma-54 dependent DNA-binding reponse regulator CrdA [Chryseobacterium gleum ATCC 35910] gi|300503907|gb|EFK35047.1| sigma-54 dependent DNA-binding reponse regulator CrdA [Chryseobacterium gleum ATCC 35910] Length = 394 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 QKIL+ ED+ + L L YE V +G Y +V +E F+L+++DI MP++ Sbjct: 2 QKILIVEDEKAISGVLHSILSDELTDYEFVIAEDGLEGYKQVEKEDFALVISDIKMPKLS 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT- 119 G EL +++ L P+ + I+G A + +SKP ++NRL+T Sbjct: 62 GTELLKQSLALKPETTFIMISGHADIDSAVSCLKEGAYDFISKPI-------DINRLITS 114 Query: 120 IKN 122 +KN Sbjct: 115 VKN 117 >gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061] gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061] Length = 228 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KIL+ ED+ + R L L GYEV G + EE F L+L D+++PE+ Sbjct: 1 MNKGKILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPEL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E+ RR + + ++ IT +V PD + + ++KPF + +L+ + Sbjct: 61 SGLEVLRRVRKTNTATPIILITARGSV---PDKVSGLDLGANDYITKPFDIEELLARI 115 >gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1238 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D + PF +L DI MP MDG+ Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 AR E +L ++ +T A S A ++KP L +L +N + KN Sbjct: 1174 ARALRERFSADELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHKN 1233 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK------VMFI 80 +EV + +GA A K+ P LLL D +MPEMDG ++ + + + ++ + Sbjct: 991 FEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSDVVSAIDTMVAEGRLAKRPVIIMM 1050 Query: 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 T +AA L + ++ VL KPF L +E+ Sbjct: 1051 TAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|16761566|ref|NP_457183.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143047|ref|NP_806389.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163396|ref|ZP_03349106.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427815|ref|ZP_03360565.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582713|ref|ZP_03364539.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650085|ref|ZP_03380138.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824413|ref|ZP_06544002.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300975|pir||AF0838 transcription regulator tctD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503867|emb|CAD05893.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29138680|gb|AAO70249.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 224 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 59/107 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L++ DI MP MDG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF L +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEEL 108 >gi|295090361|emb|CBK76468.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 229 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDG 61 KILL EDD D+ + + + L K GY V CN+G A Y + + L + D ++P +DG Sbjct: 3 KILLMEDDLDLCQSIQQELMKNGYSVDCCNDGEIAMLYALNTDYGYDLAIVDRMLPVIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + + + + V+ ITG +A+ D L KPFH+R+L+ V L Sbjct: 63 LTIIKAMRRKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELMARVRAL 118 >gi|149916661|ref|ZP_01905163.1| two-component hybrid sensor and regulator [Plesiocystis pacifica SIR-1] gi|149822378|gb|EDM81767.1| two-component hybrid sensor and regulator [Plesiocystis pacifica SIR-1] Length = 635 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 9/118 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---DKVREEPFSLLLTDIVMPEMDG 61 IL+ +DD +RR + + LG+ G+ VVS +G A D RE LLLTD+ MP +DG Sbjct: 521 ILVVDDDPTVRRAVGQMLGELGHAVVSACDGREALTCLDAHRE--VGLLLTDLAMPVLDG 578 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 L R P L + +TG AA A D A + A +L KP L L + RL+ Sbjct: 579 SGLLREVGRRWPQLPTVLMTGLAAEA---DPRAVEAAGALLRKPLELASLERTLARLI 633 >gi|325971110|ref|YP_004247301.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirochaeta sp. Buddy] gi|324026348|gb|ADY13107.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirochaeta sp. Buddy] Length = 453 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D+ ++R L A+ GYE V ++G A++K+ + L++TD+ MP+M Sbjct: 1 MKRSILICDDEKNIRSGLAMAMELEGYESVQASDGQEAWEKINKLGVDLVITDLRMPKMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +L ++ + P + V+ +TG + ++ +KP L L V + L+ Sbjct: 61 GEDLLKKISGAYPRMPVIILTGHGTIETAVEAMRGGAVDFFTKPVDLDRLSLVVKKALS 119 >gi|310642190|ref|YP_003946948.1| two component transcriptional regulator, arac family [Paenibacillus polymyxa SC2] gi|309247140|gb|ADO56707.1| Two component transcriptional regulator, AraC family [Paenibacillus polymyxa SC2] Length = 473 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ +DD +R+ + A+ + EVV +NG A D ++ +P L+LTD+ MP M Sbjct: 3 KVLIVDDDKLVRKGISSAMPWNEFNMEVVGEASNGLKALDFLKSQPVDLMLTDLAMPVMS 62 Query: 61 GIELARRATELDPDLKVMFIT 81 GIEL R A +L P+L ++ +T Sbjct: 63 GIELMRAARQLYPELHIVVLT 83 >gi|307154354|ref|YP_003889738.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306984582|gb|ADN16463.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 355 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L K+L GYEV +G A V+ EP L+L D+ MP MDG E+ Sbjct: 12 ILIVDDIPENLEILFKSLRDQGYEVRRVLSGKQALMVVKAEPPELILLDVKMPNMDGYEV 71 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +A ++ V+F++ V + ++KPFHL ++++ + LT++ Sbjct: 72 CQKLKANSETAEIPVIFLSALNEVFDKVKAFTVGGVDYITKPFHLEEVLSRIETQLTLQ 130 >gi|282859093|ref|ZP_06268224.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] gi|282588123|gb|EFB93297.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] Length = 235 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GYE C +G + + + F + + D++MP+MDG Sbjct: 6 KILLCEDDENLGTLLSEYLQAKGYEAELCPDGEAGFKAFVKSKFDICVLDVMMPKMDGFA 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA + + ++ ++F+T + ++KPF + +LV + +L Sbjct: 66 LATEIRQANAEIPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|197104399|ref|YP_002129776.1| cell cycle histidine kinase [Phenylobacterium zucineum HLK1] gi|196477819|gb|ACG77347.1| cell cycle histidine kinase [Phenylobacterium zucineum HLK1] Length = 701 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDG 61 +IL ED+D +R K L GYEV+ +G A + + L+++D+VMP M G Sbjct: 581 RILFVEDEDAVRGVAAKLLRARGYEVIEAASGEEALELAEANAGKIDLMISDVVMPGMQG 640 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L ++A VMFI+G+A + +N L KP ++ L V + L Sbjct: 641 PDLLKQARGYLGAAPVMFISGYAESEFSDLLEGERNVSFLPKPIDIKTLAERVKQEL 697 >gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 796 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ++L+ +DD D R L ++LG+ G+ V NG A ++V + SL+L D++MPEMDG Sbjct: 650 DARVLVVDDDADARERLRRSLGREGWTVDEAENGRIALERVSQARPSLILLDLMMPEMDG 709 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103 R RA D D+ V+ +T A +S + +V++K Sbjct: 710 FGFLRALRARP-DGDVPVVVLTAKEVTAAEKESLNRQADRVIAK 752 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +LL +DD R L + L + G+ V S N+G + R +L D+ MP MDG Sbjct: 529 HETVLLVDDDPAARELLQRFLEREGFHVRSANDGRAGLTLARALKPRAILLDVEMPRMDG 588 Query: 62 IELARRATELDPDL 75 + A DPDL Sbjct: 589 WAVL-HAVRNDPDL 601 >gi|197117067|ref|YP_002137494.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086427|gb|ACH37698.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 469 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L + L + V + +G A + ++++ F L++TD+ MP + G E+ Sbjct: 3 ILVVDDESVIRDGLARILEGDSFTVDTAKSGHVAIEHLQQKEFDLIITDLKMPGVSGFEV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L PD V+ ITGFA V D+ + KPF ++ +V+ L K Sbjct: 63 LAAVKTLQPDTPVIMITGFATVETAVDAMKNGTVDYIVKPFTPEQILEKVHLALEQK 119 >gi|330971947|gb|EGH72013.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aceris str. M302273PT] Length = 445 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVN 117 >gi|325106725|ref|YP_004267793.1| response regulator receiver protein [Planctomyces brasiliensis DSM 5305] gi|324966993|gb|ADY57771.1| response regulator receiver protein [Planctomyces brasiliensis DSM 5305] Length = 136 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QKI+L EDD ++ L L KAGY V C+NG + ++ L++TD++MP M G Sbjct: 3 GQKIVLIEDDREISTTLQTVLSKAGYSVTPCSNGIEGQQAITKDQPDLVITDMMMPRMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + LD KV+ +T + + L KPF + L++ + +L Sbjct: 63 FPVLEFLKTLDSPPKVIMVTANEGGRHKAYAEMLGVSAYLRKPFAMDLLLDTIRDVL 119 >gi|237718511|ref|ZP_04548992.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452218|gb|EEO58009.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1333 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD+++ +L + L + + + SC NG A + + ++ F+L+++DI+MPEMDGI L Sbjct: 1079 VLIVEDDEEINEYLCRELAE-DFHLTSCGNGKEAIELLHKQSFNLVVSDIMMPEMDGISL 1137 Query: 65 AR 66 + Sbjct: 1138 CK 1139 >gi|213610069|ref|ZP_03369895.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 215 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 59/107 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L++ DI MP MDG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF L +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEEL 108 >gi|254255244|ref|ZP_04948560.1| Response regulator receiver [Burkholderia dolosa AUO158] gi|124900981|gb|EAY71731.1| Response regulator receiver [Burkholderia dolosa AUO158] Length = 482 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ ++ L +A A YEV+ ++G +A + + L++TD+ MP M G E Sbjct: 38 ILLVDDEPNVLSALTRAFRPARYEVLCADSGEAALEILASTEVDLIVTDMRMPHMSGTEF 97 Query: 65 ARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG+A +A + N + L+KP+ DL+ + + L Sbjct: 98 LARARALYPDTMRILLTGYAEIASIVQAVNEGGVYRYLNKPWDDHDLLLTIEQAL 152 >gi|75910949|ref|YP_325245.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704674|gb|ABA24350.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 630 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 8/116 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+ +R +L Y+ ++ ++G A A R++ SL+LTD+VMP MDG+ Sbjct: 512 ILVVDDEAAIRDITKTSLESYNYKAITASDGIEAIALYAERQDEISLVLTDMVMPSMDGL 571 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 R +++P +K++ ++G AA + NA N + LSKP+ L+ +N Sbjct: 572 TTIRTLQKINPLVKIIAVSGLAA---HDKVNAAYNMGIQAFLSKPYTANQLLKTIN 624 >gi|51246573|ref|YP_066457.1| Ntr family protein two-component system response regulator [Desulfotalea psychrophila LSv54] gi|50877610|emb|CAG37450.1| related to two-component system response regulator (Ntr family) [Desulfotalea psychrophila LSv54] Length = 460 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ MR F L K GY+ + N A + +EP L++TDI MP G +L Sbjct: 4 ILVVDDERSMREFFKILLHKEGYKAYTTANINEAREIFSQEPIDLIITDIRMPSGSGFDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIKN 122 E +P + ++ IT F N A KN +SKPF++ ++ + V L N Sbjct: 64 LENIREENPHIPIILITAFTEP--NDALRAMKNGAFDYISKPFNIEEIKSVVKSALQKSN 121 >gi|162450832|ref|YP_001613199.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161161414|emb|CAN92719.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 481 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 56/104 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ ++RR L L + GYEV + +G ++E L++TD+ MP++DG Sbjct: 5 KKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++L R A DP V+ +T V ++ ++KPF Sbjct: 65 MDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPF 108 >gi|158338793|ref|YP_001519970.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158309034|gb|ABW30651.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 1318 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED ++ ++ L K GY NG A D + +P+ L+L D+ MPEMDG+ Sbjct: 1192 KILVAEDVVVNQKLVLLLLQKMGYRADVVQNGLEALDALHRQPYDLILMDMQMPEMDGLT 1251 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRL 117 AR+ E + + +I A A+ D +A NA + SKP + +LV + + Sbjct: 1252 AARQICEEYSEAERPYIIALTANAMQGDRQRCLDAGMNAYI-SKPIQVEELVRAIQAI 1308 >gi|153830709|ref|ZP_01983376.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae 623-39] gi|148873806|gb|EDL71941.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae 623-39] Length = 450 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +GASA + + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALEAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + + V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|71735452|ref|YP_274794.1| response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487873|ref|ZP_05641914.1| response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628469|ref|ZP_06461423.1| response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646780|ref|ZP_06478123.1| response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298487165|ref|ZP_07005214.1| Response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71556005|gb|AAZ35216.1| response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|298158189|gb|EFH99260.1| Response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324582|gb|EFW80659.1| response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328954|gb|EFW84953.1| response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330869963|gb|EGH04672.1| response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878818|gb|EGH12967.1| response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890754|gb|EGH23415.1| response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330892422|gb|EGH25083.1| response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330985281|gb|EGH83384.1| response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008580|gb|EGH88636.1| response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 119 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 7/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ EDD +R ++ L + Y+V+ + SA V ++ LL+TD +P+M Sbjct: 6 RTILVVEDDAIVRMLIVDVLEELEYKVLEAEDATSALTFVVDDTRHIDLLMTDQGLPDMK 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA++ EL P L V+F +G++ + + P + KPF + L ++V +L Sbjct: 66 GTALAKKVIELRPQLPVLFASGYSE-----NIDVPPGMHSIGKPFSIDQLRDKVKSIL 118 >gi|119715983|ref|YP_922948.1| response regulator receiver [Nocardioides sp. JS614] gi|119536644|gb|ABL81261.1| response regulator receiver [Nocardioides sp. JS614] Length = 123 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 10/122 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+DD D+R + L G++VV+ ++GA+A + + + L + D++MP + G++ Sbjct: 3 RILVADDDVDIRELVEFKLSTLGHDVVAVSDGAAAIEACQAQRPDLAVLDVMMPGVSGLD 62 Query: 64 LARRATELDP---DLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A RA DP DL V+ +T A V DS A ++KPF R+L + V L Sbjct: 63 -AIRAIRADPALADLPVILLTARAQESDVETGFDSGADDY---ITKPFSPRELASRVQAL 118 Query: 118 LT 119 LT Sbjct: 119 LT 120 >gi|330821098|ref|YP_004349960.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327373093|gb|AEA64448.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1246 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++A+D+ DMR +L+ LG A Y V + ++G A EP L+LTD++MP +DG Sbjct: 604 RIVVADDNADMRDYLLALLGGA-YRVEAVDDGLRALAAAHREPPDLVLTDVMMPNLDGFA 662 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A RA ++ V+ ++ A ++ L KPF R+L+ + +L Sbjct: 663 LREALRAEAATREVPVIMLSARAGEQARIEAIDAGVDDYLVKPFSARELLARIGAVL 719 >gi|160881162|ref|YP_001560130.1| two component AraC family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429828|gb|ABX43391.1| two component transcriptional regulator, AraC family [Clostridium phytofermentans ISDg] Length = 556 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 69/126 (54%), Gaps = 13/126 (10%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ ED+ + + ++ G+ G+E+ C NG A D+++++ ++++DI MPEMD Sbjct: 3 KLLVVEDEKSIAYGMANSIPWGEWGFEISGVCGNGLEALDQIKKDKPHVIISDIRMPEMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL----------RDL 110 GIEL + + P++K++ ++G+ S + ++ L KP L +D Sbjct: 63 GIELMQYLNQHYPEIKIIILSGYNDFEYMQMSIKSQVSEYLLKPTDLDEFEVMFRKMKDR 122 Query: 111 VNEVNR 116 ++E NR Sbjct: 123 LDEENR 128 >gi|120403380|ref|YP_953209.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956198|gb|ABM13203.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 52/115 (45%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ + F+ K L GY V +G SAY R F L+L D +P MDG + Sbjct: 4 ILIAEDEPRVSSFVRKGLSSNGYSVTLVTDGRSAYFSARNGGFDLMLLDTDLPGMDGFAV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RR L V+ + A VA + + KPF DL+ V LT Sbjct: 64 LRRLRADGSPLPVVMLMSRAGVADTTAALEEGADDYVVKPFRFEDLLARVRLRLT 118 >gi|66043987|ref|YP_233828.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae B728a] gi|63254694|gb|AAY35790.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae B728a] Length = 445 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVN 117 >gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120] gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120] Length = 225 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ N+G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF ++LV + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRRSN 121 >gi|307704476|ref|ZP_07641386.1| response regulator [Streptococcus mitis SK597] gi|307621996|gb|EFO01023.1| response regulator [Streptococcus mitis SK597] Length = 244 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|255692182|ref|ZP_05415857.1| putative response regulator receiver domain protein [Bacteroides finegoldii DSM 17565] gi|260622047|gb|EEX44918.1| putative response regulator receiver domain protein [Bacteroides finegoldii DSM 17565] Length = 1358 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ + R FL + L + Y+++ +G K EE L+++DI+MP++DGI Sbjct: 1106 KKLLLVEDNQEFRTFLKEQL-EDFYQIIEAADGEEGERKAIEENPDLIISDIMMPKVDGI 1164 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR T + + V+ +T A + +S +SKPF+ L+ + +L+ Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLI 1222 >gi|119468918|ref|ZP_01611943.1| predicted DNA-binding response regulator in two-component system [Alteromonadales bacterium TW-7] gi|119447570|gb|EAW28837.1| predicted DNA-binding response regulator in two-component system [Alteromonadales bacterium TW-7] Length = 449 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +DD + + L + GY+V +C +G +A ++ F +++TD+ M EMDG+ Sbjct: 10 KVLLVDDDASLLKLLAIRIESKGYQVTTCESGLAALQILKSHVFDVVITDLRMDEMDGMA 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS 92 L R+ P L V+ +T ++ PD+ Sbjct: 70 LHRQLQSRYPALPVIMMTAHGSI---PDA 95 >gi|147679175|ref|YP_001213390.1| FOG: CheY-like receiver [Pelotomaculum thermopropionicum SI] gi|146275272|dbj|BAF61021.1| FOG: CheY-like receiver [Pelotomaculum thermopropionicum SI] Length = 135 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +R L +A GY V ++G+ A KV+ SL+L DI MP M+G+E Sbjct: 8 LLIVDDQAGVRHLLCEAFKGEGYRVELASSGSEAIKKVKTRIPSLILLDIKMPGMNGLET 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 ++ PD V+ +T + + + ++ +SKPF L D Sbjct: 68 LEELRKIAPDTPVVIMTAYGELDIIAEAKKRGVQHYISKPFDLDD 112 >gi|94986969|ref|YP_594902.1| CheY-like receiver [Lawsonia intracellularis PHE/MN1-00] gi|94731218|emb|CAJ54580.1| CheY-like receiver [Lawsonia intracellularis PHE/MN1-00] Length = 126 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +N K+L+ +D MRR + L + G+ VV ++G +A++ + +E +++D MP+M Sbjct: 5 LNMKVLVVDDFSTMRRIIKNILRQLGFNNVVEADDGTTAWEMINKEKIDFVVSDWNMPQM 64 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIEL R RA+E +L + +T A ++ K + + KPF + +++++ Sbjct: 65 TGIELLRKVRASEQYSELPFLMVTAEAQQENIIEAVQAKVSNYIVKPFTAETMKQKIDKI 124 Query: 118 L 118 Sbjct: 125 F 125 >gi|29833315|ref|NP_827949.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610437|dbj|BAC74484.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 262 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD D+ L AL G+EV + +GA A D+ R+ ++ D+++P+ DG Sbjct: 35 RVLVVDDDPDLAEVLSGALRYEGWEVRAAGDGARAVDEARDLLPDAVVLDVMLPDTDGFA 94 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + PD+ V+F+T AV ++KPF L ++V + LL Sbjct: 95 VLRELRTVRPDVCVLFLTARDAVEDRIAGITAGGDDYVTKPFSLEEVVARLRGLL 149 >gi|118579804|ref|YP_901054.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118502514|gb|ABK98996.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 454 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 47/82 (57%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD R L GY+V ++G D++ F L++TD+VMP +DG+ Sbjct: 2 RRILVVEDDRFFRDLFYDLLVGQGYDVDRASSGEEGLDRLSTYAFDLVVTDLVMPGVDGM 61 Query: 63 ELARRATELDPDLKVMFITGFA 84 ++ RA E DP V+ +TG A Sbjct: 62 DILARARENDPSADVIMVTGNA 83 >gi|332702084|ref|ZP_08422172.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] gi|332552233|gb|EGJ49277.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] Length = 186 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD R + I L + G+ V + G A + +++E F L+L D+ MPEM+G E Sbjct: 60 RILLAEDDKISRIYAIAILEQRGHSVTAVGTGRKALEVLKDEHFDLVLMDVRMPEMNGEE 119 Query: 64 LAR--RATEL-DPDLKVMFITGFA 84 R RA E DP + ++ +T +A Sbjct: 120 ATRRIRAGEAGDPQVPIVALTAYA 143 >gi|330966366|gb|EGH66626.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. actinidiae str. M302091] Length = 446 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVN 117 >gi|327485366|gb|AEA79772.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae LMA3894-4] Length = 450 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +GASA + + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALEAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + + V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|312886453|ref|ZP_07746062.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311301081|gb|EFQ78141.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1346 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+DD R +L ++L K+ Y V NG + K L+++D+ MP MDGIEL Sbjct: 1085 ILLVDDNDDFRNYLKESLEKS-YTVTEATNGKDGWQKALSGHPDLVVSDVSMPVMDGIEL 1143 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLLT 119 R+ + D + FI AL + + + + L+KPF L + +++ Sbjct: 1144 CRK---IKTDKRTSFIPVILLTALGREEDHIRGLQTEANDYLTKPFSFEILNTRIKNMIS 1200 Query: 120 I 120 + Sbjct: 1201 L 1201 >gi|170751613|ref|YP_001757873.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658135|gb|ACB27190.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 946 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F ++AL + G+ V N A ++ + F ++ TD+VMP M+GI Sbjct: 823 VLVVEDNADVGGFSVQALIELGFRPVLAGNADEALAELSTDAGRFDVVFTDVVMPGMNGI 882 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +LA+ L P L V+ +G++ V ++ ++L KP+ DL R+ + Sbjct: 883 DLAKEIRRLHPGLPVVLTSGYSHVLAQEGTHG---FELLQKPYSADDLSRVFRRVTS 936 >gi|218782041|ref|YP_002433359.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763425|gb|ACL05891.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1110 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVM 56 ++ IL+ ED+ +M R +++ LG Y++++ N+ + A ++ P L++TD++M Sbjct: 988 HEMILVVEDEPAILNMARLMLEKLG---YKILAANSPSQAIQLAKDPPGEIRLVITDVIM 1044 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P M+G EL R + P++K +F++G+ A + + + L KPF + L V Sbjct: 1045 PNMNGRELEERLRMMHPNIKTLFMSGYTANVIAQHGVLDEEIRFLKKPFTKKILAARVRE 1104 Query: 117 LL 118 L Sbjct: 1105 AL 1106 >gi|50084547|ref|YP_046057.1| two-component regulatory system response regulator [Acinetobacter sp. ADP1] gi|49530523|emb|CAG68235.1| response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) [Acinetobacter sp. ADP1] Length = 491 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V S SA D++ ++ ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTSFEEAQSALDQLLDDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLGKVKNNYPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|312794028|ref|YP_004026951.1| two component transcriptional regulator, arac family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181168|gb|ADQ41338.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 509 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 14/125 (11%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL ED+ MR+ +IK + + G+E+ NG A D ++ E +++TDI MP MD Sbjct: 3 KILLVEDEIFMRKGIIKLIDWERLGFEIAYEAGNGQEALDILKSEKVDVIITDIKMPVMD 62 Query: 61 GIELARRAT-ELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIEL RR + E + ++ I+G FA A+ N L KP +L+ + Sbjct: 63 GIELIRRVSEEFENKPAIIIISGYNEFEFAKAAIKYGVN-----DYLLKPIDENELIQTL 117 Query: 115 NRLLT 119 R+ T Sbjct: 118 ERIKT 122 >gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 228 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ DM + L + G+ +++ +NG A ++ +EP L++ DI+MP+MDG E+ Sbjct: 7 ILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPDMDGFEV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 +R + + ++F+T A + + + + ++ + KPF LR+L + L Sbjct: 67 CQRIRQ-TSQIPILFLT-----ARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTL 119 >gi|94971055|ref|YP_593103.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94553105|gb|ABF43029.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 125 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 49/84 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL +D + + R + L GY+ VS N A K ++ F L++TD+ M M G+ Sbjct: 2 KQILFVDDHEVLARLSCEILEMQGYKAVSAYNAEDALRKFDDQTFDLIVTDMRMEGMSGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 ELA+R + +P++ V+ +TG+ + Sbjct: 62 ELAKRVHQKNPEVPVIIVTGYGPI 85 >gi|86609101|ref|YP_477863.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557643|gb|ABD02600.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 413 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ R + AL + GY+V+ ++G + + P ++L D VMP++DG E Sbjct: 34 VLVVDDERSQRLLVCYALEREGYQVLEASSGEACLQLAAQHPVDMVLLDAVMPDLDGFEC 93 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + DL ++ +T + ++ A + +SKP L + L+ Sbjct: 94 CRRLHAQNSDLPILIVTALEDESCVDEAFAAGASDYISKPIRWAVLKRRIRHLI 147 >gi|148256630|ref|YP_001241215.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146408803|gb|ABQ37309.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 936 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 ++ +L+ EDD +R+ +I + GY ++ N A A D + P LL TD++MP M Sbjct: 816 DETVLVVEDDPLVRQHVIAQVTSLGYRTLAAGNAAEALDVLERHPEIDLLFTDVIMPGAM 875 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +G +LA A + LK +F +G+ A+ +L+KP+ +L Sbjct: 876 NGRQLAEAAQKQRRSLKTLFTSGYTENAIVHHGRLDAGVLLLAKPYRKPEL 926 >gi|320536674|ref|ZP_08036689.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320146496|gb|EFW38097.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 456 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R L AL GYEV + ++G D L++TD+ MPE+ Sbjct: 1 MKFSILIIDDEKNIREGLQMALEDEGYEVFTASDGKKGLDIAFSNDIDLVITDLKMPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ RR + P + V+ +TG V ++ L+KP L L V R L Sbjct: 61 GEEVLRRISSETPGVPVIVLTGHGTVETAVEAMRTGAYDFLTKPLDLDRLSLLVRRAL 118 >gi|303326119|ref|ZP_07356562.1| nitrogen regulation protein NtrX [Desulfovibrio sp. 3_1_syn3] gi|302864035|gb|EFL86966.1| nitrogen regulation protein NtrX [Desulfovibrio sp. 3_1_syn3] Length = 133 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++D+ R L K L K GY NG A D + E F +++ D+ MP +DG+ Sbjct: 6 ILLVDDEEDVTRILAKRLEKRGYACARAANGREALDAMEGEFFPIVIMDVKMPVLDGMGA 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ T P +++ ++G A + L + + L KP +L+ ++ Sbjct: 66 LQQMTTRWPKTQIILLSGHADMQLAVQAMSQGAFGYLMKPVDFDELLFKIE 116 >gi|218887078|ref|YP_002436399.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758032|gb|ACL08931.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 119 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 49/84 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + + K L + G EV + +NG A +V + + ++ D+ MP MDG+E Sbjct: 2 KILIVDDETEFLDLMHKRLARRGMEVDTADNGTDAVARVEQGAYDAVVLDVKMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 RR L P++ V+ +TG A++ Sbjct: 62 TLRRIKALRPEVPVVLLTGHASLG 85 >gi|149377890|ref|ZP_01895619.1| sigma 54-dependent transcriptional activator containing CheY-like receiver domain [Marinobacter algicola DG893] gi|149357832|gb|EDM46325.1| sigma 54-dependent transcriptional activator containing CheY-like receiver domain [Marinobacter algicola DG893] Length = 488 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+R L+ L A + V + A ++ E P ++++D+ MP M G + Sbjct: 5 QILIVEDDQDLREALVTTLELAKFRVREAADAEQALAQLAESPVDMVVSDVNMPGMSGHD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L P L M IT + ++ + L KPF LV+ V R++ Sbjct: 65 LLHEIQRRYPGLPTMLITAYGQISHAVSAMQSGAIDYLVKPFEPSVLVDAVTRVV 119 >gi|315922180|ref|ZP_07918420.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313696055|gb|EFS32890.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1322 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+++ R+F+ + L + Y+V +NG A E+ ++++D++MP MDG Sbjct: 1074 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEAEAIANEKEVDIIVSDVMMPGMDGF 1132 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL R E ++K I A D N + L+KPF++ L N + L Sbjct: 1133 ELCLRLKE---NMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHL 1189 Query: 118 LTIK 121 L ++ Sbjct: 1190 LALQ 1193 >gi|301059985|ref|ZP_07200859.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300445864|gb|EFK09755.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 156 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 58/111 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++ + +L K L + GY V + +G A + +E F + + D+ MP MDG+E Sbjct: 1 VLLIDDEETLVEYLSKRLLREGYTVKATFSGEEAVEVSGKEDFDVAVVDLKMPGMDGVET 60 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +R ++ P L+ + +T + +S K L KP +L++ +N Sbjct: 61 QKRLKKIQPFLQSIVLTAHGTIDTALESGKEDAFKYLLKPIEYDNLLDTIN 111 >gi|289673812|ref|ZP_06494702.1| response regulator receiver [Pseudomonas syringae pv. syringae FF5] gi|330900704|gb|EGH32123.1| response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] gi|330982706|gb|EGH80809.1| response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330983368|gb|EGH81471.1| response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 123 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ EDD +R ++ L + Y V+ + SA V ++ LL+TD +P+M Sbjct: 6 RTILVVEDDAIVRMLIVDVLEELEYRVLEAEDATSALTFVADDSNHIDLLMTDQGLPDMK 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA++ EL P L V+F +G++ + + P + KPF + L ++V +L Sbjct: 66 GTALAKKVIELRPQLPVLFASGYSE-----NIDVPPGMHSIGKPFSIDQLRDKVKSIL 118 >gi|260173915|ref|ZP_05760327.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1308 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+++ R+F+ + L + Y+V +NG A E+ ++++D++MP MDG Sbjct: 1060 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEAEAIANEKEVDIIVSDVMMPGMDGF 1118 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL R E ++K I A D N + L+KPF++ L N + L Sbjct: 1119 ELCLRLKE---NMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHL 1175 Query: 118 LTIK 121 L ++ Sbjct: 1176 LALQ 1179 >gi|256060736|ref|ZP_05450900.1| DNA-binding response regulator [Brucella neotomae 5K33] gi|261324726|ref|ZP_05963923.1| FeuP [Brucella neotomae 5K33] gi|261300706|gb|EEY04203.1| FeuP [Brucella neotomae 5K33] Length = 229 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L +A+ AGY V S +G + + EP+ ++ DI +P+MDGI Sbjct: 2 RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYRGDTEPYDAVVLDIGLPQMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGAD---DYVAKPFHIEEVLARLRALI 116 >gi|237720705|ref|ZP_04551186.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|298484152|ref|ZP_07002318.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|229449540|gb|EEO55331.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|298269656|gb|EFI11251.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 1328 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+D++R +L+ +L Y V +C NG A ++E L+L+DI+MPEM G Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEALIIIKEYWPELVLSDIMMPEMRGD 1121 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D+++ I AL ++N + L KPF ++ L + L Sbjct: 1122 EL---CVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANL 1178 Query: 118 L 118 L Sbjct: 1179 L 1179 >gi|256828201|ref|YP_003156929.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfomicrobium baculatum DSM 4028] gi|256577377|gb|ACU88513.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfomicrobium baculatum DSM 4028] Length = 487 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R +AL AG+ V +NG A K+ + F L+++D+ MP+M+G +L Sbjct: 7 VLVVDDEPALREICEEALTGAGHAVTLASNGQDALGKLGAQGFDLVISDLRMPDMNGQDL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + D+ + +TG+ D A ++KPF ++ L+ V +L Sbjct: 67 LSQIRKRQLDVDFLVMTGYGTTETAVDIMKNGAADYIAKPFDIKHLLLRVRSIL 120 >gi|160882542|ref|ZP_02063545.1| hypothetical protein BACOVA_00493 [Bacteroides ovatus ATCC 8483] gi|156112123|gb|EDO13868.1| hypothetical protein BACOVA_00493 [Bacteroides ovatus ATCC 8483] Length = 1333 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD+++ +L + L + + + SC NG A + + ++ F+L+++DI+MPEMDGI L Sbjct: 1079 VLIVEDDEEINEYLCRELAE-DFHLTSCGNGKEAIELLHKQSFNLVVSDIMMPEMDGISL 1137 Query: 65 AR 66 + Sbjct: 1138 CK 1139 >gi|160882799|ref|ZP_02063802.1| hypothetical protein BACOVA_00761 [Bacteroides ovatus ATCC 8483] gi|156111823|gb|EDO13568.1| hypothetical protein BACOVA_00761 [Bacteroides ovatus ATCC 8483] Length = 1328 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+D++R +L+ +L Y V +C NG A ++E L+L+DI+MPEM G Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEALIIIKEYWPELVLSDIMMPEMRGD 1121 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D+++ I AL ++N + L KPF ++ L + L Sbjct: 1122 EL---CVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANL 1178 Query: 118 L 118 L Sbjct: 1179 L 1179 >gi|149174473|ref|ZP_01853099.1| alkaline phosphatase synthesis response regulator [Planctomyces maris DSM 8797] gi|148846583|gb|EDL60920.1| alkaline phosphatase synthesis response regulator [Planctomyces maris DSM 8797] Length = 129 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN I + +DD + R + L KAG++V +G ++K R++ +++TD+ MP M+ Sbjct: 1 MNHLIYICDDDSHIVRAISMKLRKAGFDVECFPDGFECWEKSRQQAPHMIITDLQMPRMN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDS--NAPKNAKVLSKPFHLRDLVNEVNR 116 G+EL RA E + + +TG + D K V+ KPF + L+ +V Sbjct: 61 GLELCEKIRALETTRLIPITLLTG-KGFEFDHDEYMQTLKITNVMVKPFSPKKLLMQVQE 119 Query: 117 LLTIKN 122 L + N Sbjct: 120 SLNLTN 125 >gi|13488379|ref|NP_109386.1| chemotaxis histidine kinase [Mesorhizobium loti MAFF303099] gi|14028133|dbj|BAB54725.1| chemotaxis histidine kinase [Mesorhizobium loti MAFF303099] Length = 757 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 39/65 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K LG GYEV +G ++ VR PF L++TDI MP MDG Sbjct: 633 RKRVLVIDDSLTVRELQRKMLGNYGYEVEVAVDGMDGWNAVRSGPFDLVVTDIDMPRMDG 692 Query: 62 IELAR 66 IEL R Sbjct: 693 IELVR 697 >gi|319778145|ref|YP_004134575.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171864|gb|ADV15401.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 125 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL +D+DD+R +L + +EV SC++G A E L+L D++MP+M Sbjct: 1 MRARILYVDDEDDIREIAQMSLELEPEFEVRSCSSGMQALADAAEWQPDLILLDVMMPDM 60 Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG E RR E + V+FIT A V++KPF L EV RL Sbjct: 61 DGPETLRRLAEAGATASIPVVFITARTQTHEVERYLAMGAVGVIAKPFDPLALAREVKRL 120 Query: 118 L 118 L Sbjct: 121 L 121 >gi|295135073|ref|YP_003585749.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294983088|gb|ADF53553.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 240 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L YEV NG ++K +++ + L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGTVLKDYLAMNEYEVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + ++ ++F+T A A+ D K KV L+KPF Sbjct: 65 FTLAKEIREKNEEIPIIFLT---AKAMKED--VLKGYKVGADDYLNKPF 108 >gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ +D+ +R + +AL GYEV + +G +A ++ EEP L+L ++++P +DG Sbjct: 4 TSRILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEPPDLVLLEVMLPGLDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +ARR + +M +TG +V + D+ A L KP+ +L+ V LL Sbjct: 64 LAVARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGA---DDYLVKPYASEELLARVRALL 120 >gi|162450926|ref|YP_001613293.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161161508|emb|CAN92813.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 126 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59 +++IL+ +DD +RR L + L + GY V NG A +R++P S L+L D++MP M Sbjct: 7 SKRILIVDDDAAIRRTLSELLEEEGYAVACAANGREALACLRDDPSSIALVLLDLMMPVM 66 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DG + R + DP L I A + +A +LSKPF + L++ + R Sbjct: 67 DGFQF-RAEQKRDPTLAATPIVVMTARGATERAGIDADA-ILSKPFDVLKLMDTIER 121 >gi|91201200|emb|CAJ74260.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1069 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 40/64 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A +D RFL + L K G EV S NG +A++ ++ F L++ DI+MP MDG + Sbjct: 54 KILIANYSEDDLRFLERMLEKHGGEVTSATNGLTAFETLQNNRFDLIICDILMPHMDGFQ 113 Query: 64 LARR 67 R+ Sbjct: 114 FCRK 117 >gi|87198062|ref|YP_495319.1| histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87133743|gb|ABD24485.1| histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 556 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 +L+ +D+ +R ++ AL G E + ++G +A + P LL+TD+ +P ++G Sbjct: 425 VLVVDDEPTVRMMMVDALDLIGVECLEAHDGPAALAMLERHPGIDLLVTDVGLPGGLNGR 484 Query: 63 ELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A A DL V+F+TG+A +V L D+ P +L+KPF + DL + V LL Sbjct: 485 QVADEARRRRSDLGVLFVTGYADSVILQRDTMEP-GIDILTKPFTIEDLQSRVAVLL 540 >gi|172057875|ref|YP_001814335.1| response regulator receiver protein [Exiguobacterium sibiricum 255-15] gi|171990396|gb|ACB61318.1| response regulator receiver protein [Exiguobacterium sibiricum 255-15] Length = 121 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ K+L+ +D MR + + L K GY+VV NG A K +E L+ DI MPEM Sbjct: 1 MSAKVLIVDDAAFMRMMIKEILSKNGYDVVGEAENGREAVSKYKELTPDLVTLDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + +P KV+ + ++ D+ + KPF ++ V++ ++ Sbjct: 61 DGISALKEIKAFNPAAKVIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAVSKTIS 120 >gi|260583532|ref|ZP_05851280.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC 700633] gi|260158158|gb|EEW93226.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC 700633] Length = 231 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 45/71 (63%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ+IL+ ED+ ++ RF+ L GYE C +G S +E + ++L D+++PE++ Sbjct: 3 MNQRILIIEDEKNLARFVELELQHEGYETKICFDGRSGLQAATDEDWDVILLDLMLPELN 62 Query: 61 GIELARRATEL 71 G+E+ RR ++ Sbjct: 63 GLEVVRRLRQV 73 >gi|218709714|ref|YP_002417335.1| sensor histidine kinase/response regulator [Vibrio splendidus LGP32] gi|218322733|emb|CAV18910.1| sensor histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 682 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +RRF L K G++VV +G A D + E L+L DI MP MDGI Sbjct: 564 RTIMVVDDNESLRRFTAMLLEKQGFDVVQKEDGQQALDALDTEDVDLILMDIEMPIMDGI 623 Query: 63 ELARR 67 E +RR Sbjct: 624 EASRR 628 >gi|319900535|ref|YP_004160263.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415566|gb|ADV42677.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 1317 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED +M+ F++K L + Y+V++ NG A + + E +L+++DI+MPEMDG+EL Sbjct: 1073 LLVVEDSLEMQAFVVKQL-SSEYQVLTAMNGVEAMNILEEHTVNLIISDIMMPEMDGLEL 1131 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R +ELD + ++ +T + + + KPF + L V+ LL+ Sbjct: 1132 CERLKSELDYSHIPIILLTAKTTLQAKIEGMKLGADVYIEKPFSVEYLRVCVSNLLS 1188 >gi|217970257|ref|YP_002355491.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thauera sp. MZ1T] gi|217507584|gb|ACK54595.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thauera sp. MZ1T] Length = 465 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +L+ +D++ R L LG+ GY + +G A + L L DI MP MDG Sbjct: 8 DRHVLIVDDEELYRELLGGRLGRQGYRISEAGDGEGALRCIEGGGVELALIDIKMPGMDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IEL R +L P +V+ +TG ++ + L+KP+ L +L V R L Sbjct: 68 IELLERIKQLAPRTEVVVLTGHGSIDSAIAAMKLGAFDYLTKPYQLTELDLVVARAL 124 >gi|242279329|ref|YP_002991458.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] gi|242122223|gb|ACS79919.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] Length = 138 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +I+L +D++ + K K G+EV++C +G A + + + ++ DI MP MDG Sbjct: 3 NTRIMLVDDEERLLCTTKKLFEKLGFEVLTCTSGKEALELLEQTDVHVVFLDIKMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 IE +R + P ++V+ +TG A++ + L KP +++L+ V Sbjct: 63 IETLQRIKKKFPFVEVVILTGHASMEAAVEGLKLGAFDFLIKPVSMKELLENVE 116 >gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Sorangium cellulosum 'So ce 56'] gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Sorangium cellulosum 'So ce 56'] Length = 1143 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLA+D+ DMR ++ + L + + V + +GA A R P +L+LTD++MP +DG Sbjct: 648 RVLLADDNADMREYVGRVL-RERWTVEAVADGAEALASARRSPPALVLTDVMMPNLDGFG 706 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R RA E + V+ ++ A + L KPF R+LV V Sbjct: 707 LLRALRADERTRAVPVVMLSARAGEESRVEGLEAGADDYLPKPFSARELVARV 759 >gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 939 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D + R L+ LG G++V NG+ A +KV +L+L DIVMP MDG Sbjct: 723 RKTILVVDDVAENRAVLVDMLGPLGFDVAEAANGSEALEKVEALRPALVLMDIVMPGMDG 782 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E R R T+ L ++ I+ A+ S A L KP L L+++V LL Sbjct: 783 LEAIRRLRQTQAFQHLPIVAISAGASRTDAAQSLAAGADVFLPKPIDLGGLLSQVATLLH 842 Query: 120 IK 121 ++ Sbjct: 843 VE 844 >gi|159900425|ref|YP_001546672.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893464|gb|ABX06544.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 850 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED++ +R L + L G+EVVS +G A K R F L++TD+ MP+M G ++ Sbjct: 725 ILIVEDEELVRIALSRMLAAWGHEVVSAESGRDALAKFRPGMFDLVITDLGMPDMMGWDV 784 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 R E + ++ M ++G+A ++P + A V++KPF L V LL Sbjct: 785 LRLIREREHGIRTMMLSGWAR-QIDPAEAKLRGADVVVAKPFDQAILRTTVAHLL 838 >gi|24216593|ref|NP_714074.1| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|24197918|gb|AAN51092.1| histidine kinase and response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 507 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 12/118 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++R L + + K GY+V+S + SA + +R + ++++DIVM GIE+ Sbjct: 12 VLVIDDEFEIRTVLERVISKEGYQVLSAKDSDSALEIIRNQKVDVVISDIVMNGKSGIEV 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVNR 116 + +++ ++ V+ +TG NPD N+ + A +SKP R+++ + R Sbjct: 72 VKEIRKINENIPVILMTG------NPDLNSAEEAVRNRAFDYISKPIRRRNILEILER 123 >gi|54303669|ref|YP_133662.1| C4-dicarboxylate transporttranscriptional regulatory protein [Photobacterium profundum SS9] gi|46917100|emb|CAG23862.1| hypothetical C4-dicarboxylate transporttranscriptional regulatory protein [Photobacterium profundum SS9] Length = 450 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ ++ +D+ +R L + L Y+V ++ A D + ++++DI MP +D Sbjct: 1 MNKHVIFIDDEKPIRDALGQTLELEDYDVSLFSSAKPALDTIDNHYTGVIISDINMPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ +RA +DP+L ++ +TG + + D+ L KPF L++ V R Sbjct: 61 GLTFLKRALAIDPELSIILLTGHGDITMAVDAMRIGAYDFLEKPFSTETLLDVVKR 116 >gi|307942247|ref|ZP_07657598.1| nitrogen regulation protein [Roseibium sp. TrichSKD4] gi|307774533|gb|EFO33743.1| nitrogen regulation protein [Roseibium sp. TrichSKD4] Length = 479 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY V +N + + V L++TD+VMP+ + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYTVRVTSNATTLWRWVSSGDGDLVITDVVMPDENIFDV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL ++ ++ ++ L KPF L++++N V R L Sbjct: 66 LPRMKKARPDLPILVMSAQNTFMTAIKASEKGAYDYLPKPFDLKEMINIVGRAL 119 >gi|307822870|ref|ZP_07653101.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacter tundripaludum SV96] gi|307736474|gb|EFO07320.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacter tundripaludum SV96] Length = 468 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 55/110 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD + L L +GY V+S NG A K+ F L+++D+ MP MDG +L Sbjct: 6 VLVVEDDLSLCEALCDTLEISGYRVISARNGTEALIKLELGHFKLVVSDVQMPVMDGFQL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + + V+ +T F + ++ + L KPF + LV++V Sbjct: 66 LKNMQHKYSETPVLLMTAFGTIPKAVEAMQAGASDYLIKPFDAQALVSKV 115 >gi|296133035|ref|YP_003640282.1| response regulator receiver protein [Thermincola sp. JR] gi|296031613|gb|ADG82381.1| response regulator receiver protein [Thermincola potens JR] Length = 120 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K GYE+V NG A +K +E L+ DI MPEM Sbjct: 1 MGTRILIVDDAAFMRMMIRDILSKNGYEIVGEAENGQVAVEKYQELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++DP+ ++ + + D+ + KPF ++ V + L+ Sbjct: 61 DGITAVKEIKKIDPNANIIMCSAMGQQPMVIDAIQAGARDFIVKPFQPDRVLEAVRKALS 120 >gi|114565066|ref|YP_752580.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Shewanella frigidimarina NCIMB 400] gi|114336359|gb|ABI73741.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella frigidimarina NCIMB 400] Length = 462 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ MR FL+KAL K V + + A A + F LL+ DI +P+ GIE Sbjct: 17 VLIVDDEPGMRSFLMKALAKKFALVETASTIAQAEELRSHGHFDLLIVDIRLPDRSGIEW 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 77 HEALDDPERQSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMITAVDRCI 130 >gi|23012219|ref|ZP_00052359.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 295 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +L+ +D D+ LG GY+V+ ++ +A + + E +L TD++MP M Sbjct: 170 TETVLVVDDRPDVAAVAGTILGDFGYKVLVVDSPRAAIEILDSEARIDVLFTDLIMPGGM 229 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A E P +KV+ TG+A +L ++++KP+ +L V R++ Sbjct: 230 NGVMLARAARERQPKIKVLLTTGYAEASLERTDAGGTEFEIINKPYKRMELARRVRRVI 288 >gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ ED++++ R L L GYE + G + RE+ + L+L DI++PEM Sbjct: 1 MTHRILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++ +R + V+ +T + V ++KPF + +L+ + L Sbjct: 61 GIDVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118 >gi|237714770|ref|ZP_04545251.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262406954|ref|ZP_06083503.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229445095|gb|EEO50886.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262355657|gb|EEZ04748.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1342 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED++++R L++ K Y V +G ++K +E ++L+DI+MP+M G Sbjct: 1090 SSKILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSG 1148 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+ R ++ + V+ +T A ++KPF+++ L N L+ Sbjct: 1149 IEMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1207 >gi|240145490|ref|ZP_04744091.1| sporulation initiation phosphotransferase F [Roseburia intestinalis L1-82] gi|257202305|gb|EEV00590.1| sporulation initiation phosphotransferase F [Roseburia intestinalis L1-82] gi|291536017|emb|CBL09129.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Roseburia intestinalis M50/1] Length = 119 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+++ +D MR + L K GYE+ + NGA A +K E L+L DI MP+MDGI Sbjct: 3 KVMICDDAAFMRMMIKDILTKNGYEIAAEAENGAIAVEKYPEAKPDLVLMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ E+D + V+ + A+ ++ + KPF ++ V +++ Sbjct: 63 QALKKIKEIDANANVIMCSAMGQQAMVIEAIQSGAKDFIVKPFQAERVLEAVKKVV 118 >gi|254461441|ref|ZP_05074857.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2083] gi|206678030|gb|EDZ42517.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium HTCC2083] Length = 735 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 +LL ED +R F +AL G+ V+ + A + + + + +TD+VMP MDG Sbjct: 618 VLLVEDKAPVRAFATRALSMRGFTVIEAESAEKALELLEDTALHVDVFVTDVVMPGMDGP 677 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + A P++ V+F++G+A A + + L KPF L +L + V L + Sbjct: 678 TWVQEALIARPNVNVVFVSGYAEGAFQGKNPKFLKSVFLPKPFSLAELTSTVQGQLDV 735 >gi|325168704|ref|YP_004280494.1| PAS/PAC sensor hybrid histidine kinase [Agrobacterium sp. H13-3] gi|325064427|gb|ADY68116.1| PAS/PAC sensor hybrid histidine kinase [Agrobacterium sp. H13-3] Length = 1061 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDDD +R + L GY V+ + SA+ V LL TD+VMP M Sbjct: 792 ETVLVVEDDDGVRETSVALLTDLGYRVLQARDAQSAFAVVSSGVQIDLLFTDVVMPGPMR 851 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LAR+A P + V+F +G+ ++ ++LSKP+ L +V +L Sbjct: 852 STDLARKAKAQFPGMAVLFTSGYTENSIVHGGRLDAGVELLSKPYTREALARKVRHVL 909 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 16/122 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ + + + + G+ V N+ A +LLTD+ +P M GIEL Sbjct: 948 VLIVEDEPLILMSTVDMVEELGHTVHEANSAEDALSVFETNRIDMLLTDVGLPGMSGIEL 1007 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAP-----KNAKVLSKPFH---LRDLVNEVNR 116 AR E P+++++F +G D NA +A+ LSKPF LR ++ + +R Sbjct: 1008 ARHVRERWPNVRIVFASG--------DDNAKTASGISDAQQLSKPFSIDGLRQVLGKADR 1059 Query: 117 LL 118 L Sbjct: 1060 TL 1061 >gi|298479786|ref|ZP_06997986.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298274176|gb|EFI15737.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1342 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED++++R L++ K Y V +G ++K +E ++L+DI+MP+M G Sbjct: 1090 SSKILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSG 1148 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+ R ++ + V+ +T A ++KPF+++ L N L+ Sbjct: 1149 IEMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1207 >gi|282878926|ref|ZP_06287690.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] gi|281298925|gb|EFA91330.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] Length = 232 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GY C +G Y + ++ F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYTATLCPDGEVGYREFLKDKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + D+ ++F+T A L D + K+ ++KPF + +LV V +L Sbjct: 66 LAQEIRQANADMPIIFLT---AKVLKED--ILEGFKIGADDYITKPFSMEELVLRVEAIL 120 >gi|167770186|ref|ZP_02442239.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM 17241] gi|167667508|gb|EDS11638.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 53/114 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD +R + L GY+V +GA A ++ L++ DI+MPE+DG L Sbjct: 10 ILVAEDDYSLRELMSDFLSDNGYQVYRAKDGAEALIQIERSHIDLMICDIMMPELDGYGL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E DL V+ +T + + KP +L+ V+ LL Sbjct: 70 TRELREAGFDLPVIMVTARETLEDKHMGFLAGTDDYMVKPIDFEELLWRVSALL 123 >gi|83311392|ref|YP_421656.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946233|dbj|BAE51097.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1196 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 14/123 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ + + + + GY + NG A+++++ + LLLTD MPEMDG EL Sbjct: 935 ILVAEDNPTNKVVIRHLMERLGYAIEVVGNGTEAWERMQIRDYGLLLTDCHMPEMDGYEL 994 Query: 65 ARRATELD----PDLKVMFIT-----GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +R E + DL ++ +T G A L+ NA L+KP L L + + Sbjct: 995 TQRIREWEVETGHDLPIVALTADALAGTARRCLDSGMNA-----FLAKPIDLVQLDSTIR 1049 Query: 116 RLL 118 RLL Sbjct: 1050 RLL 1052 >gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 228 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ +P++ ++ +T + D + KPF R+L + LL Sbjct: 64 AKEIRRTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|227873539|ref|ZP_03991784.1| response regulator [Oribacterium sinus F0268] gi|227840629|gb|EEJ51014.1| response regulator [Oribacterium sinus F0268] Length = 121 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL +D MR + +L K G+ V +G A K EE L++ DI MP MD Sbjct: 3 KILLVDDAAFMRMMVKNSLTKGGFADCTFVEAQDGMEAVKKFEEENPDLVIMDITMPNMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++ ++ E PD KV+ T ++ D+ + KPF+ + + V +L Sbjct: 63 GLQALKKIREAHPDAKVVMCTAMGQESMVVDAIKSGAKDFVVKPFNAERITSTVKNIL 120 >gi|226326076|ref|ZP_03801594.1| hypothetical protein COPCOM_03894 [Coprococcus comes ATCC 27758] gi|225205618|gb|EEG87972.1| hypothetical protein COPCOM_03894 [Coprococcus comes ATCC 27758] Length = 209 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 55/101 (54%) Query: 17 FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 + K+L AGYEV CN+G A + + E + L++ D+ +P +DG+E+ R + + + K Sbjct: 1 MIAKSLHLAGYEVDMCNDGEQALEMIYAELYDLIVLDLNLPGVDGMEILRELRKENEETK 60 Query: 77 VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 V+ ++ + +A + + KPFHL++L V L Sbjct: 61 VLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSL 101 >gi|196229659|ref|ZP_03128523.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196225985|gb|EDY20491.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1055 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 5/107 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMP- 57 ++ ILL ED+ +R L + GY V+S +GA A +K E P LLLTD+VMP Sbjct: 929 SETILLVEDEPMVRNLTRSVLERLGYHVISAESGAVALEK-WENPGIQVDLLLTDLVMPG 987 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 + G ELA P LKV++ +G++A A++ + + L KP Sbjct: 988 GISGRELADALIARQPSLKVIYCSGYSADAVDHHLPLGRGRRFLPKP 1034 >gi|218778516|ref|YP_002429834.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218759900|gb|ACL02366.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 464 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 64/119 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL +DD + L + L AGY + +GA A ++ ++ F +++TD+ MP MDG+ Sbjct: 8 EKILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMDGM 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + + D + + +TGF ++ + ++ ++KP +L++ V+ + K Sbjct: 68 GVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKFK 126 >gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1121 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ ++ ++ L + GY NG A + VR + + ++L D+ MPEMDG+E Sbjct: 883 KILLAEDNAVNQKVALRLLARLGYRADVVANGLEALEAVRRQSYDVVLMDVQMPEMDGLE 942 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 +RR + I A A+ D A + L+KP + LV+ + R Sbjct: 943 ASRRIKLGEAGRAAPRIIALTADAMQGDREKCLAAGMDDYLTKPIKVEALVDALTR 998 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 +++L +D+D RR L+ G V + A + R +PF L + D+ MP+M+ Sbjct: 739 GKRLLAVDDNDTNRRILVLQSQSWGMLVRDSRSPQEALGWIKRGDPFDLAILDMQMPDMN 798 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L R P+L ++ + + PD A A L+KP L + LLTI Sbjct: 799 GLMLGREIRAHRPNLPLVLYSSLGCREVGPD--AALFAFQLTKPIKPSQLYDA---LLTI 853 >gi|296448177|ref|ZP_06890075.1| integral membrane sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296254308|gb|EFH01437.1| integral membrane sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 526 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 K LL ED ++R + AL G VV + + A ++ + P LL+TD+ +P + G Sbjct: 405 KALLVEDQIEVRMLVAAALEGVGCTVVQAEDSSEALAILQSDAPLDLLVTDVGLPGISGR 464 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + ++ ITG+A +L+ P N ++L KPF L +L +V +L Sbjct: 465 QLAEAAQASRRGMPILLITGYAGRSLDGLRAEP-NVEILLKPFTLDELEQKVEAML 519 >gi|197117814|ref|YP_002138241.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087174|gb|ACH38445.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 444 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 46/79 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +RR L L + GY VV+ NG +A + E+ L+L D+ + MDG E+ Sbjct: 4 ILIADDDIAIRRTLELHLTEEGYSVVTAANGPNAVEVALEKEIDLMLLDLRLSGMDGFEV 63 Query: 65 ARRATELDPDLKVMFITGF 83 R E PDL V+ IT + Sbjct: 64 LGRVKERRPDLPVVMITAY 82 >gi|94968997|ref|YP_591045.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94551047|gb|ABF40971.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 123 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D+ + L L KAG++ G +A + R L+++D++MP+M+G Sbjct: 7 KRRVLVVDDEQVIADTLSIILNKAGFDASPVYTGTAAVESARSMQPDLIISDVIMPDMNG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEV 114 IE A + P K++ +G AA A +S K ++L+KP H +DL+ ++ Sbjct: 67 IEAAIQIRRFLPSCKILLFSGQAATADLLESARAKGHEFEILAKPVHPQDLLAKL 121 >gi|309388506|gb|ADO76386.1| response regulator receiver protein [Halanaerobium praevalens DSM 2228] Length = 118 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI++ +D MR L + + G+EV++ NG A +K + ++ DI MPEMDGI Sbjct: 3 KIIVVDDAAFMRLNLKQIMEGLGHEVIAEAENGKDAIEKYQASKPDIMFMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ E+DP+ K++ + G + +N + K+ + KPF + +++ L Sbjct: 63 EAVKKIKEIDPEAKIIMCSAMGQKKIVINAITAGAKD--FIVKPFKKDKIAETIDKFL 118 >gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GY+V+ ++G A + VR E LL+ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVMMPNMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ D A +A L KPF L +L+ V L+ Sbjct: 62 VCRTLRSEGWDRSILVLTARDGVS---DRVAGLDAGADDYLPKPFALEELLARVRSLV 116 >gi|182412767|ref|YP_001817833.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839981|gb|ACB74233.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 926 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 +L+A+D+ +R L + GY V++ +GA A R + +++TD+ MP +DG Sbjct: 803 VLVADDEPGIRNTAAAMLARHGYRVLTAADGAEAIALFAPRSKEIRVVITDLAMPNLDGA 862 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 LA L+PD++++ ++G A +P++ P N L KPF L+ V+ +L Sbjct: 863 ALASVVERLNPDVRIVAVSGHAP---DPEAKPPINQFTDAFLLKPFRPEVLLTTVHEVL 918 >gi|153807836|ref|ZP_01960504.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185] gi|149129445|gb|EDM20659.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185] Length = 1348 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL ED+ ++ L L + YEVV +NG DK EE ++++DI+MPEM GI Sbjct: 1092 RKVLLVEDNHELLNVL-SNLFSSTYEVVMAHNGKEGLDKAHEEFPDIIVSDIMMPEMTGI 1150 Query: 63 ELARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + D +L ++ +T A+ N + ++KPF+ L+ N L+ Sbjct: 1151 ELC-ETIKSDFNLCHIPIVLLTALASTQQNIEGLTKGADDYITKPFNTSILLVRCNNLV 1208 >gi|222054920|ref|YP_002537282.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221564209|gb|ACM20181.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 456 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +D++ +R L L GY+ +G A V++E SL+L DI MP MD Sbjct: 1 MSATILVVDDEESIRTSLAGILEDEGYKTAFAVDGVEALTVVQQEMPSLVLLDIWMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G++ ++ +L P+L V+ ++G + S + KP L ++ VN +++ Sbjct: 61 GMQTLQKLKDLYPNLTVVMMSGHGTIETAVRSTKMGAYDFVEKPLSLEKVLVCVNNAISM 120 >gi|254974012|ref|ZP_05270484.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091398|ref|ZP_05320876.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313058|ref|ZP_05354641.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255515815|ref|ZP_05383491.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255648907|ref|ZP_05395809.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260682120|ref|YP_003213405.1| two-component response regulator [Clostridium difficile CD196] gi|260685718|ref|YP_003216851.1| two-component response regulator [Clostridium difficile R20291] gi|306519022|ref|ZP_07405369.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260208283|emb|CBA60705.1| two-component response regulator [Clostridium difficile CD196] gi|260211734|emb|CBE02058.1| two-component response regulator [Clostridium difficile R20291] Length = 245 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ +DD +R + + ++GY V +G A + ++ E LL+ DI MP +G Sbjct: 3 KVLICDDDKIVRDDIANIVKESGYVDYVKKVKDGIEAIEFIKSEKIDLLIIDIDMPYKNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 I+ A+ +D D+ ++F+TGFA +L P + KPF +++ +N Sbjct: 63 IDSAKEILSIDKDIHIVFVTGFADYSLESFKVHP--IDFIVKPFKKEKILDSIN 114 >gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8] gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8] Length = 225 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++P D Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + E + V+ +T + V L KPF LR+L+ V L+ Sbjct: 61 GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|86146824|ref|ZP_01065144.1| sensor histidine kinase/response regulator LuxN [Vibrio sp. MED222] gi|85835474|gb|EAQ53612.1| sensor histidine kinase/response regulator LuxN [Vibrio sp. MED222] Length = 682 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 39/63 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D++ +RRF L K G++VV +G A D + E L+L DI MP MDGIE Sbjct: 566 IMVVDDNESLRRFTAMLLEKQGFDVVQKEDGQQALDALDTEDVDLILMDIEMPIMDGIEA 625 Query: 65 ARR 67 +RR Sbjct: 626 SRR 628 >gi|302342093|ref|YP_003806622.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] gi|301638706|gb|ADK84028.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] Length = 518 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ +D+ + + G E +S ++GA+A + R E L+L D++MP M+ Sbjct: 10 IKARILIVDDEPINIEIMSELFSLHGAETISASDGATALELARREMPDLVLLDVMMPGMN 69 Query: 61 GIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ RR A E+ L V+ +TG + LSKP H+ +LV LL Sbjct: 70 GYEVCRRLKADEVTRRLPVVMVTGLGQIDDKIKGLEAGADDFLSKPVHMAELVTRTRSLL 129 Query: 119 TIK 121 +K Sbjct: 130 RVK 132 >gi|298489788|ref|YP_003719965.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298231706|gb|ADI62842.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1418 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +R L Y+ ++ +NG A Y + ++ S +L D++MPEMDG Sbjct: 1300 ILVVDDEPQIRDVATIILENHNYQTLTASNGVEAIVLYAQHKKN-ISAVLMDMMMPEMDG 1358 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I R +++P ++V+ +G + P+S+ + VL KP+ +L+ +N+++ Sbjct: 1359 ITAIRTLKKMNPKVQVIACSGLNTKDVFPESDEMEVQSVLFKPYTANELLRNLNQII 1415 >gi|297568419|ref|YP_003689763.1| response regulator receiver sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924334|gb|ADH85144.1| response regulator receiver sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 482 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D+ + + + K Y V + +G +A + + E F LLLTDI+MPEMDG+ Sbjct: 28 RILAVDDEPLVLQLITLQAQKLHYRVSTAASGPAALEIMAGEHFDLLLTDILMPEMDGLS 87 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 A PD++V+ I+G + + A L KPF ++L Sbjct: 88 FMTEARRRQPDIEVIVISGQHEIKTAVAAMKQGAANYLQKPFSPQEL 134 >gi|224540196|ref|ZP_03680735.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM 14838] gi|224518186|gb|EEF87291.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM 14838] Length = 1316 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 5/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +D+ ++ +L K L + ++V++ NG A + + +E SL+++D++MPEMD Sbjct: 1063 ISETILLVDDNVEILTYLQKKLSR-NFKVITAQNGREALEVLGKENMSLVVSDVMMPEMD 1121 Query: 61 GIELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+EL E +P L V+ +T + + L KPF + L+ +N + Sbjct: 1122 GMELCTYIKE-NPSFCHLPVILLTAKSMTMYVEEGFQAGADDYLVKPFKVSTLIVRINNI 1180 Query: 118 LT 119 L+ Sbjct: 1181 LS 1182 >gi|188583962|ref|YP_001927407.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347460|gb|ACB82872.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1086 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +G S ++ + LL+TD+ +P M+ Sbjct: 966 ETVLIVDDEPTVRMLVTEVLEDLGYTAIEAADGPSGLKVLQSDVRIDLLVTDVGLPGGMN 1025 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A L P+LKV+FITG+A A + + +V++KPF + L + +++ Sbjct: 1026 GRQVADAGRVLRPELKVLFITGYAENAAVGNGHLEPGMQVITKPFVMEVLAGRIKEMIS 1084 >gi|218528583|ref|YP_002419399.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520886|gb|ACK81471.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1089 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY V +G S ++ + L++TD+ +P M+ Sbjct: 967 ETVLVVDDESSVRMLVTEVLEDLGYLAVEAADGPSGLKILQSDLRVDLMITDVGLPGGMN 1026 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A A P LKV+FITG+A A + ++L+KPF + L + +LT Sbjct: 1027 GRQVADAARATRPGLKVLFITGYAENAAIGSGHLEPGMQILTKPFVMETLAARIKEMLT 1085 >gi|152992275|ref|YP_001357996.1| two-component response regulator [Sulfurovum sp. NBC37-1] gi|151424136|dbj|BAF71639.1| two-component response regulator [Sulfurovum sp. NBC37-1] Length = 223 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD ++ + + L + G+EVVS +G A +K+ E + LLL DI +P +DG+E Sbjct: 3 KILLLEDDANLNETVTEFLEEEGHEVVSVYDGYEAQEKLYESKYDLLLFDINVPGIDGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + + +FIT +V + KPF L++L V LL Sbjct: 63 LLKESRKEGVVAPAIFITSMDSVDDLERGFKSGCDDYIRKPFALKELKIRVETLL 117 >gi|159044193|ref|YP_001532987.1| histidine kinase [Dinoroseobacter shibae DFL 12] gi|157911953|gb|ABV93386.1| histidine kinase [Dinoroseobacter shibae DFL 12] Length = 779 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGI 62 +LL ED+ +R F +AL G+ V+ N +A + + L +TD++MP +DG Sbjct: 651 VLLVEDEAPVRAFAARALRLNGFTVLEAENAEAALELLENPALEVDLFVTDVIMPGLDGP 710 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R+A L P + V+F++G+A L+ + + N+ L KPF L+ L+ V Sbjct: 711 SWVRQALALRPGIPVVFVSGYAEDLLSGEEDPIPNSVFLPKPFSLKQLIATV 762 >gi|21674869|ref|NP_662934.1| response regulator [Chlorobium tepidum TLS] gi|21648092|gb|AAM73276.1| response regulator [Chlorobium tepidum TLS] Length = 125 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 N IL+ ED+DD+R+ + L + GY V +NG +++ P +++TD++MPE + Sbjct: 4 NDPILVIEDEDDIRQMICDILEEDGYATVQASNGNEGLQLLQKTPEIRIVITDLLMPEKE 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD-----SNAPKNAKVLSKPF---HLRDLVN 112 GI + E P +KV+ I+G L P+ + A + L KPF L ++ Sbjct: 64 GIAMISELREDFPWIKVVAISGGG--ILIPENYLNRAKAVGSDATLCKPFESGELLSIIE 121 Query: 113 EVNR 116 E+NR Sbjct: 122 ELNR 125 >gi|88860379|ref|ZP_01135017.1| response regulator receiver (CheY-like) modulated metal-dependent phosphohydrolase [Pseudoalteromonas tunicata D2] gi|88817577|gb|EAR27394.1| response regulator receiver (CheY-like) modulated metal-dependent phosphohydrolase [Pseudoalteromonas tunicata D2] Length = 140 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 5/122 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ ++ L + L K YE+ + NN A D + + L+++DI MP M GIEL Sbjct: 4 ILLVDDEPEVLIALSRILRKQ-YELSTANNAHEALDLLNQTHVDLVISDIRMPTMSGIEL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKP---FHLRDLVNEVNRLLTI 120 ++ EL P + + ++G+A + + + + A+ +LSKP F L+D++ + L + Sbjct: 63 LKKIRELYPHMGRILLSGYADMEQCQQAISDEVARIILSKPWDNFELKDIIALIVELTEL 122 Query: 121 KN 122 K+ Sbjct: 123 KS 124 >gi|307823213|ref|ZP_07653443.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307735988|gb|EFO06835.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 229 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 57/113 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ ED + +R ++AL G++V+ + + D++ P L++ D+ +P DGI L Sbjct: 7 IIVVEDHEALREVTVQALRGEGHQVIGVDCAEALADQLGVMPVDLMVVDLNLPGEDGISL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + PD+ ++ +T +A D L+KP L +L ++ L Sbjct: 67 TRRIRQSQPDIGIVMVTARGELAEKMDGYQSGADIYLTKPVSLDELTAAIHAL 119 >gi|319953842|ref|YP_004165109.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319422502|gb|ADV49611.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 235 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ILL EDD+ + L + L G+E+ +G+ A + F L + D++MPEMDG Sbjct: 7 HSILLVEDDESLGYLLSEYLKMKGFEITRVKSGSEALTSMESSIFQLAILDVMMPEMDGF 66 Query: 63 ELARRATELDPDLKVMFITG 82 LA + P+L +F+T Sbjct: 67 TLASKIKSHFPELPFIFLTA 86 >gi|255263567|ref|ZP_05342909.1| PAS/PAC sensor hybrid histidine kinase [Thalassiobium sp. R2A62] gi|255105902|gb|EET48576.1| PAS/PAC sensor hybrid histidine kinase [Thalassiobium sp. R2A62] Length = 677 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDG 61 KIL+AED+ ++ L L AG+ V + N+G A + + E F LLLTD++MP + G Sbjct: 538 KILVAEDEIEVMNILKSILENAGHSVTTANSGDEALEVFKSECGFDLLLTDVIMPGTLLG 597 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 LA+ ++P++ +F++G+A+ + + L KP DL++ +++ L K Sbjct: 598 PNLAKEIRLINPNIPCIFLSGYASETAAQGNRLKPSEISLMKPVSRMDLLSAISKALEPK 657 Query: 122 N 122 + Sbjct: 658 D 658 >gi|258405768|ref|YP_003198510.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797995|gb|ACV68932.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1176 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 + +L+ ED++ + + L + GY V++ + A D + P L+LTD+VMP M+ Sbjct: 1055 ETLLVVEDEEQLLELIGSVLEEYGYTVLAAGSPQQAMDLAAKTKTPIELMLTDVVMPGMN 1114 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R P++K ++++G+ + + KPF + L +V R+L Sbjct: 1115 GKMLRARIQAEHPEIKTVYMSGYTDNVIVKQGMVEPGLAFIQKPFSMEGLARKVRRVL 1172 >gi|91772718|ref|YP_565410.1| response regulator receiver [Methanococcoides burtonii DSM 6242] gi|91711733|gb|ABE51660.1| PhoP response regulator receiver [Methanococcoides burtonii DSM 6242] Length = 170 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D+ D +AL GY V+ NNG A+D ++ + ++L D++MP+MDG Sbjct: 48 HKVLIVDDEPDAVIATKRALEADGYNVIEANNGTMAFDALKSDIPDVILLDVMMPDMDGF 107 Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR E L ++ V+ +T + + ++KPF+L++L + +L Sbjct: 108 EVCRRLKEEPLYENIPVIMLTAKGEINDKVEGLDIGADDYMTKPFNLKELKARIKTVL 165 >gi|312130452|ref|YP_003997792.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311906998|gb|ADQ17439.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 222 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 47/84 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +DD+D+ LI L K Y+V S NG A + +E ++L DI+MP +D Sbjct: 1 MNGKILVVDDDEDILELLIYNLEKEQYQVRSAENGLKAIEVAKEFQPDIILMDIMMPLLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA 84 GIE + P ++++T A Sbjct: 61 GIEAGKIIKTEQPQTHLIYLTARA 84 >gi|229514643|ref|ZP_04404104.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae TMA 21] gi|229348623|gb|EEO13581.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae TMA 21] Length = 450 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +GASA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVEMFADGASALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|284993343|ref|YP_003411898.1| response regulator receiver protein [Geodermatophilus obscurus DSM 43160] gi|284066589|gb|ADB77527.1| response regulator receiver protein [Geodermatophilus obscurus DSM 43160] Length = 120 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+A+D MR+ +I+ L +AGY+ +V +G AYDKV E L+L+D MP M Sbjct: 2 KILVADDSRVMRQIVIRTLRQAGYDDHDIVEAEDGRDAYDKVHAENPDLVLSDWNMPNMT 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G+E + + F+T + + ++A +++KPF Sbjct: 62 GLECLQALRSAGSAVPFGFVTSEGSAEMRDRASAAGALFLIAKPF 106 >gi|219130391|ref|XP_002185350.1| diatom histidine kinase 1 [Phaeodactylum tricornutum CCAP 1055/1] gi|217403265|gb|EEC43219.1| diatom histidine kinase 1 [Phaeodactylum tricornutum CCAP 1055/1] Length = 883 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 7/113 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+AED+ ++ L++ L + G +VV +NG A D+ EEPF ++L D+ MP M+G+ Sbjct: 753 RVLVAEDNIINQKVLLRILDRLGMKDVVMVDNGKKAVDREAEEPFDVVLMDMQMPVMNGV 812 Query: 63 E-----LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E + R AT P V+F+T + + + KPF++ ++ Sbjct: 813 EACKRIVGRHATR-HPQALVIFVTANVSHEFEAECQKAGAVGFMPKPFNIGEI 864 >gi|189466645|ref|ZP_03015430.1| hypothetical protein BACINT_03020 [Bacteroides intestinalis DSM 17393] gi|189434909|gb|EDV03894.1| hypothetical protein BACINT_03020 [Bacteroides intestinalis DSM 17393] Length = 1368 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+D++R ++ + L Y V+ NNG A + E+ L+L+DI+MP+MDG+EL Sbjct: 1114 VLLAEDNDEVRAYVKECLDPYFY-VLDVNNGKDALELSLEKYPDLILSDIMMPQMDGLEL 1172 Query: 65 ARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + DL+ V+ +T + V + + + KPF + L+ +N LL Sbjct: 1173 CSRVKQ---DLQLGHIPVVLMTAKSMVVHIKEGFSVGADDYIVKPFSMDVLICRINSLL 1228 >gi|28211381|ref|NP_782325.1| chemotaxis protein cheY [Clostridium tetani E88] gi|28203822|gb|AAO36262.1| chemotaxis protein cheY [Clostridium tetani E88] Length = 119 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K G+EVV +NG A + + E ++ DI MP+MDGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNGFEVVGEASNGVKAVELYKTEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + +DPD KV+ + + D+ + KPF ++ + +++ Sbjct: 63 EAVKEIKSIDPDAKVIMCSAMGQQTMVMDAIKAGAKDFIVKPFQPDRVLEAIKKVI 118 >gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 44/70 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD Sbjct: 1 MNNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GIELARRATE 70 GIE+ R+ E Sbjct: 61 GIEVCRKVRE 70 >gi|332361250|gb|EGJ39054.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 232 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L + GY V+ +G D R++ L++TDI+MP MD Sbjct: 1 MGKTILLVDDEMDILDIQKRYLMQDGYHVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + PD +F T ++L D ++KPF R+LV Sbjct: 61 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADD-------FIAKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|331018385|gb|EGH98441.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 446 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLPREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVN 117 >gi|323495664|ref|ZP_08100735.1| sensor protein LuxN [Vibrio sinaloensis DSM 21326] gi|323319299|gb|EGA72239.1| sensor protein LuxN [Vibrio sinaloensis DSM 21326] Length = 830 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 13/121 (10%) Query: 4 KILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L DD +++R L+K L + GY+VV NNG A + + P L+ DI MP MDG Sbjct: 710 QLILVVDDKEVQRALVKLYLEQLGYDVVLANNGKVAIEIINSNPIDLVFMDIQMPVMDGF 769 Query: 63 ELARRATELDPDLKVMFITGFAAVA------------LNPDSNAPKNAKVLSKPFHLRDL 110 E A + P + ++ ++G +A L+ ++ +KVL+ FHL + Sbjct: 770 EAAAIIKQSFPAIPIIALSGESAPQDLARINQLMDGRLSKPTSKQALSKVLNNTFHLEET 829 Query: 111 V 111 + Sbjct: 830 I 830 >gi|308270674|emb|CBX27285.1| hypothetical protein N47_I07050 [uncultured Desulfobacterium sp.] Length = 1252 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + I++ EDD+ +R F++K L GY+V++ NG A + EP L LTD++MP + Sbjct: 1133 ETIMVVEDDEMVRNFIVKVLEHYGYKVLTAANGEEAIQISGDYHEPIHLTLTDVIMPGIS 1192 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L P+++V++++G+ + + KPF L +V L Sbjct: 1193 SQVMELSLKSLRPEMRVLYMSGYTDNTIVHHGVLDSGKAFIGKPFSPESLGRKVRETL 1250 >gi|301058351|ref|ZP_07199384.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300447587|gb|EFK11319.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 302 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 53/103 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D+D R K L + GYE NG +A ++ +++ D+ MP MDG Sbjct: 4 NIRVLMVDDEDQFRSTTSKILTRRGYETTVAENGEAAVQIIKNAKQDVVVLDVKMPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 E ++DP+++V+ +TG +V S + L+KP Sbjct: 64 HEALHEIKKIDPNVQVIMLTGHGSVDSAKKSLKGEAFDYLNKP 106 >gi|302811550|ref|XP_002987464.1| hypothetical protein SELMODRAFT_426235 [Selaginella moellendorffii] gi|300144870|gb|EFJ11551.1| hypothetical protein SELMODRAFT_426235 [Selaginella moellendorffii] Length = 1209 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 7/123 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++ ++K L + GY NG A D V + + ++L D MPEMDG+E Sbjct: 1085 RILVAEDNIVNQKVILKLLLRLGYTADVVGNGREALDSVMRQVYDVILMDCFMPEMDGLE 1144 Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 +RR E + P ++ +T A AL + A A + +SKP +L+ + + Sbjct: 1145 ASRRIRENIRPTPVIVAVT---AAALKEEMQACLQAGMHMYISKPIQADELMQTLGKCWR 1201 Query: 120 IKN 122 +K+ Sbjct: 1202 MKH 1204 >gi|294674567|ref|YP_003575183.1| response regulator [Prevotella ruminicola 23] gi|294472888|gb|ADE82277.1| response regulator [Prevotella ruminicola 23] Length = 519 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L +D+ + + I L K GYE+V+ +NG A D R+ F L+L D MP + G Sbjct: 3 NGLLLWVDDEIEQLKGHIMFLEKKGYEIVTVSNGTDALDLCRQRNFDLVLLDEQMPGISG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E R+ E++P + V+ +T + + K A L KP VN LLT+K Sbjct: 63 LETLRQLKEINPSIPVVMVTKSEEENIMEQAIGQKIADYLIKP------VNPNQILLTLK 116 >gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 908 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 ++L +D ++ L L ++V +NG SA VR+ +PFSL + D MPE Sbjct: 501 RVLAVDDSENSLSILKNYLESFSFDVSVASNGRSALSTVRKANKDGKPFSLAILDWKMPE 560 Query: 59 MDGIELARR---ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MDG+ELAR TE + K++ I G+ N VL KPF+ L + ++ Sbjct: 561 MDGLELARELHAMTEAENKPKILLIAGYGQNGTPALRNNKVVDGVLEKPFNQNKLFDAIS 620 Query: 116 RL 117 R+ Sbjct: 621 RI 622 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED++ ++ + L G +V NG A ++ EE F +L D+ MP MDGI Sbjct: 653 LLLVEDNEINQQVAQELLEGFGIKVAVAENGEEAIARLNEEQFDGVLMDMQMPVMDGIS- 711 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNA 94 A R +P + I A + NA Sbjct: 712 ATREIRKNPKFATLPIIALTANVYVSEQNA 741 >gi|207721961|ref|YP_002252399.1| composite two component regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] gi|206587133|emb|CAQ17717.1| composite two component regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] Length = 875 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+AED R L K L GY V +GA+A ++ E F LLTD MP ++ Sbjct: 736 LGAHILVAEDHPINRELLAKQLRLLGYRVTLAEDGAAALQRLSETRFDALLTDCCMPRLN 795 Query: 61 GIELARRATELD------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G ELARR + + P L ++ IT + A + KP L L + Sbjct: 796 GFELARRIRQRERQTPGGPRLAILAITATTLAEEHARCRAVGMDDCVLKPTTLAALQEAL 855 Query: 115 NRLLTIK 121 +RL I+ Sbjct: 856 SRLWHIE 862 >gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes] Length = 228 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E F L+L D+++PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|312961435|ref|ZP_07775938.1| PAS [Pseudomonas fluorescens WH6] gi|311284330|gb|EFQ62908.1| PAS [Pseudomonas fluorescens WH6] Length = 519 Score = 56.6 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDG 61 ++IL+ ED ++ L GY + N A A K++ + L+ +D++MP EM+G Sbjct: 401 ERILIVEDRPEVAELAQVVLADYGYRTDTALNAAEALAKLKHTTYDLVFSDLIMPGEMNG 460 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR + L P +++ TG+A +L + +++ KP+ DL ++ +L Sbjct: 461 AALAREVSRLYPCTRILLTTGYAKDSLERADVQVQEFELIPKPYRPVDLPRKIRAVL 517 >gi|326318680|ref|YP_004236352.1| response regulator receiver protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375516|gb|ADX47785.1| response regulator receiver protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 153 Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL ED+ ++R + L EV SC A +PF +++TD+ +P M G + Sbjct: 33 RILYVEDNAELRETIGMLLEGDDREVTSCATAEEALKLDGPQPFDIVVTDVSLPGMSGTD 92 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R+ ++DP ++ +G+ D+ P N + L KPF L DL Sbjct: 93 LCRKLLQVDPQRWIVLCSGY-QFGHGLDTLGP-NVRALLKPFELEDL 137 >gi|237727859|ref|ZP_04558340.1| transcriptional regulatory protein ZraR [Citrobacter sp. 30_2] gi|226910416|gb|EEH96334.1| transcriptional regulatory protein ZraR [Citrobacter sp. 30_2] Length = 441 Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GYEV +G +A ++VRE F L+L D+ M EMDGI Sbjct: 8 ILVVDDDISHCTILQALLRGWGYEVALAYSGRAALEQVRERVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + V+ +T F++V Sbjct: 68 LKEIKALNPAIPVLIMTAFSSV 89 >gi|225569666|ref|ZP_03778691.1| hypothetical protein CLOHYLEM_05760 [Clostridium hylemonae DSM 15053] gi|225161136|gb|EEG73755.1| hypothetical protein CLOHYLEM_05760 [Clostridium hylemonae DSM 15053] Length = 536 Score = 56.6 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 67/118 (56%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+A+D+ + + ++ + G+E+V N+G SAY +++ ++++TDI MP D Sbjct: 3 KVLIADDEKKVCQLIVNLVEWKSFGFEIVGVVNDGISAYKFLQDNTVNVMITDIRMPGCD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL ++A L PD+ ++ I+G++ ++ L KP +DL + +++ Sbjct: 63 GMELIQKAKVLYPDMYIVIISGYSQFDYAQNAIRFGVEDYLLKPIRKKDLTATLEKII 120 >gi|310830489|ref|YP_003965590.1| Sporulation initiation phosphotransferase F [Paenibacillus polymyxa SC2] gi|309249956|gb|ADO59522.1| Sporulation initiation phosphotransferase F [Paenibacillus polymyxa SC2] Length = 312 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV----SCNNGASAYDKVREEPFSLLLTDIVM 56 M++++L+ +D MR + K L AGYEV+ + +G + Y ++ + + DI M Sbjct: 1 MSKRVLIVDDAYYMRSLIKKTLKDAGYEVIDEAKNAEDGIAKYFDLKPD---FVTMDINM 57 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P+M GIE R+ DP +++ +TG + + + A + L KPF L+++++ Sbjct: 58 PDMSGIEATRKIVSQDPQAQIIAVTGSNSEDIKAEMLAAGAKQYLKKPFQPAFLLSKIDH 117 Query: 117 LL 118 LL Sbjct: 118 LL 119 >gi|302384122|ref|YP_003819945.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302194750|gb|ADL02322.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 687 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 N +IL ED+ +R K L + GYEV+ +G A E +L++D++MP + Sbjct: 566 NGRILFVEDEAAVRGIAAKLLRQRGYEVIEAADGEEALILAEEWAGQIDMLISDVIMPGL 625 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG L ++A D VMFI+G+A + L KP ++ L V + L Sbjct: 626 DGPSLLKKARPFLGDAPVMFISGYAESDFSDLLQDEVGVSFLPKPLDIKTLAERVKQEL 684 >gi|170739552|ref|YP_001768207.1| two component, sigma54 specific, Fis family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193826|gb|ACA15773.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacterium sp. 4-46] Length = 452 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ EDD +R + +AL AG++V S + + +++TD+ +P MDG++ Sbjct: 6 KVIVIEDDPAVRAGIEQALDLAGFDVRSFGSAEWVRSHLPGGFAGVVVTDVKLPGMDGLQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + +LDP L V+ ITG +++ + ++KPF LV V R + +N Sbjct: 66 LLKHLRDLDPKLPVIVITGHGDISMAVQAMRDGAYDFITKPFASEQLVGVVRRAVENRN 124 >gi|149277743|ref|ZP_01883883.1| C4-dicarboxylate transport transcriptional regulatory protein [Pedobacter sp. BAL39] gi|149231431|gb|EDM36810.1| C4-dicarboxylate transport transcriptional regulatory protein [Pedobacter sp. BAL39] Length = 468 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R L + L YEV +NG + ++++ F L+L DI M +MDG+E Sbjct: 3 KLLIIDDERAIRSTLREILEYENYEVEDIDNGVDGLELIKKKKFDLVLCDIKMNKMDGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL-TIKN 122 + +A PDL + I+G V +++ +SKP ++NRLL T++N Sbjct: 63 VLEQALAYSPDLPFIMISGHGTVETAIEASKKGAFDFISKP-------PDLNRLLITVRN 115 >gi|120611204|ref|YP_970882.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589668|gb|ABM33108.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 688 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ EDD +R F+ + L G++V+S ++GA + F LL++D+ +P +G + Sbjct: 568 VLVVEDDATVREFVCELLRDLGFQVLSASSGAGGMAMLSGAIHFDLLVSDVGLPGPNGRQ 627 Query: 64 LARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +A A E P + V+ +TG+A A++P A + +++ KPF + LV +V Sbjct: 628 VADFARERLPGILVLLMTGYAEQAAMDPGFLAAHHMELIVKPFDAQALVRKV 679 >gi|170734937|ref|YP_001774051.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia cenocepacia MC0-3] gi|169820975|gb|ACA95556.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia cenocepacia MC0-3] Length = 470 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ ++ L + AGY++V+ ++G +A + + L+++D+ MP M G E Sbjct: 32 ILLVDDEPNVLSALRRVFRPAGYDIVTADSGETALEILASTDIDLIVSDMRMPHMSGAEF 91 Query: 65 ARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG+A +A + N + L+KP+ DL+ V + L Sbjct: 92 LARARALYPDTMRILLTGYAEIASVVQAVNEGGVYRYLNKPWDDHDLLLTVEQAL 146 >gi|91976178|ref|YP_568837.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682634|gb|ABE38936.1| cell cycle control histidine kinase CckA [Rhodopseudomonas palustris BisB5] Length = 850 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL ED++ +R + L GY V+ +NG A + E L+++D+VMPEMDG Sbjct: 732 ILLVEDEEGLRSLNARGLRSRGYNVIEASNGIEALEAFDEHGGSVDLVVSDVVMPEMDGP 791 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + + DLK++F++G+A A + + P+N + L+KPF L LV +V + Sbjct: 792 SLLKAMRARNSDLKIIFVSGYAEDAF--EKSLPENEQFAFLAKPFALSALVAKVKETM 847 >gi|329960128|ref|ZP_08298592.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328533080|gb|EGF59853.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 1343 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D++R +L L + Y + C+NG A +E +L+++DI+MPEM G E Sbjct: 1082 KILIVEDNDELREYLRNTLSET-YHIQVCSNGKMALTIAKEYLPNLIISDIMMPEMRGDE 1140 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + L D++ I ALN D N + + + KPF++ L + LL Sbjct: 1141 LCK---ALKNDIETSHIPIILLTALNTDKNIIEGLETGADEYIVKPFNIGILRATIANLL 1197 >gi|319791710|ref|YP_004153350.1| two component, sigma54 specific, Fis family transcriptional regulator [Variovorax paradoxus EPS] gi|315594173|gb|ADU35239.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Variovorax paradoxus EPS] Length = 462 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 62/117 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD DM R + L AGY+V + + +A ++ E L+L+D+ +P DG+ Sbjct: 7 RLLVVDDDPDMLRLISMRLVSAGYQVTAVTSAETALTQLEIEHPQLVLSDVRLPGRDGLA 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + P L V+ +T + ++ A L+KP+ R+L++++ + L + Sbjct: 67 LFDEIRKRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDARELLDKIGQALAL 123 >gi|300919423|ref|ZP_07135927.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300413516|gb|EFJ96826.1| response regulator receiver domain protein [Escherichia coli MS 115-1] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLCGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|253701540|ref|YP_003022729.1| transcriptional regulator [Geobacter sp. M21] gi|251776390|gb|ACT18971.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 234 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ + R + L + GY + +G A +KV+ E F L++ D+++P + G E Sbjct: 7 QILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVKVEKFDLIILDVMLPGIGGFE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R LD + V+ +T +A + A L KPF+L++ + V+ +L Sbjct: 67 VCERIRALDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGML 121 >gi|116694185|ref|YP_728396.1| chemotaxis response regulator [Ralstonia eutropha H16] gi|113528684|emb|CAJ95031.1| chemotaxis response regulator [Ralstonia eutropha H16] Length = 130 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D +RR + L G++V +G A+ F +L+TD VMP MDG Sbjct: 3 SPSILVVDDSPSLRRMIGACLRAGGFDVTEAADGDQAHALAAGASFGMLVTDQVMPGMDG 62 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L R RATE + ++ +T ++ + A + L KPF L+ V LL+ Sbjct: 63 LTLIRSLRATERYACIPILMLTTEQDGSIREQARAAGASGFLPKPFDPDQLMRAVTALLS 122 Query: 120 IKN 122 + Sbjct: 123 TAH 125 >gi|15600359|ref|NP_253853.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107104267|ref|ZP_01368185.1| hypothetical protein PaerPA_01005341 [Pseudomonas aeruginosa PACS2] gi|116053313|ref|YP_793637.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894266|ref|YP_002443136.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254238134|ref|ZP_04931457.1| hypothetical protein PACG_04253 [Pseudomonas aeruginosa C3719] gi|254243953|ref|ZP_04937275.1| hypothetical protein PA2G_04783 [Pseudomonas aeruginosa 2192] gi|296392021|ref|ZP_06881496.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313110229|ref|ZP_07796125.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9951468|gb|AAG08551.1|AE004929_6 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115588534|gb|ABJ14549.1| probable two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170065|gb|EAZ55576.1| hypothetical protein PACG_04253 [Pseudomonas aeruginosa C3719] gi|126197331|gb|EAZ61394.1| hypothetical protein PA2G_04783 [Pseudomonas aeruginosa 2192] gi|218774495|emb|CAW30312.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310882627|gb|EFQ41221.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 462 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62 ++LL +DD +R+ L + L AG +V + ++ A D + + + ++++DI MP +DG+ Sbjct: 12 QVLLIDDDPHLRQALRQTLDLAGLKVATLDD-ARQLDTAQCKDWPGVVVSDIRMPGIDGM 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 EL R+ E D DL V+ ITG V L + L KPF L++ V R L ++ Sbjct: 71 ELLRQLHEQDADLPVILITGHGDVPLAVQAMRGGAYDFLEKPFPSDALLDSVRRALEVR 129 >gi|332296765|ref|YP_004438687.1| response regulator receiver protein [Treponema brennaborense DSM 12168] gi|332179868|gb|AEE15556.1| response regulator receiver protein [Treponema brennaborense DSM 12168] Length = 122 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL +D +R+ + L + GYEVV +GA + + + F L++TDI MP MDG Sbjct: 3 SKKILAVDDSVSIRKSISFILSQEGYEVVEAEDGADGLVRAKADKFGLIITDINMPNMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-----NAPKNAKVLSKPFHLRDLVNEVNR 116 I+L + EL ++ F N DS A + KPF L+ V + Sbjct: 63 IQLIK---ELRQTVEYKFTPIIVLTTENQDSKMQEGKAAGATGWIVKPFASEKLIAVVKK 119 Query: 117 LL 118 ++ Sbjct: 120 II 121 >gi|308272468|emb|CBX29072.1| Transcriptional regulatory protein zraR [uncultured Desulfobacterium sp.] Length = 450 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 57/86 (66%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++I + +D+ + R L KAL K G++V + +G+ ++++ PF ++ D+++P+++ Sbjct: 4 MERRIAIVDDEITVCRILSKALTKDGFKVETYTSGSPFLERMKASPFGIVFVDLMLPDIN 63 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+EL +++ + +V+ ITG++++ Sbjct: 64 GMELLAEIKKINENSEVIIITGYSSI 89 >gi|253702489|ref|YP_003023678.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251777339|gb|ACT19920.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 455 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ R L L K GY++ + + G A +++ + F LLLTD+ M + Sbjct: 1 MIGSILIVDDEKGQRDILTAILTKMGYKIQTASGGEEALQQLQHKEFDLLLTDLKMQGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+EL R DP V+ +T + ++ L KP DL+ V R Sbjct: 61 GMELMERVLADDPSQCVVMMTAHGTIDSAVEAMKKGAFDYLEKPLEREDLILTVQR 116 >gi|227539864|ref|ZP_03969913.1| two-component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227240142|gb|EEI90157.1| two-component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 154 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 2 NQKI-LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N+KI +L DD++ KA + YEV + +GA A + V++ P ++++TD MPEM Sbjct: 3 NKKIAVLYVDDEENNLLSFKATFRLKYEVHTAISGADAIEIVKKNPVNVIITDQRMPEMT 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDL 110 G+E +LDP + +TG+ +A D+ N K L+KP+ +L Sbjct: 63 GVEFLEEIIKLDPHPMRILLTGYTDMAAVIDAVNKGKIFHYLNKPWSEEEL 113 >gi|94500213|ref|ZP_01306747.1| two component system response regulatory protein [Oceanobacter sp. RED65] gi|94427786|gb|EAT12762.1| two component system response regulatory protein [Oceanobacter sp. RED65] Length = 227 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 15/122 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD + L + L + G+EV++ +G A D + +EP L++ D++MPE++GIE Sbjct: 3 RLLLVDDDQALNSLLTEYLSQEGFEVINAYDGKQALDSLTQEP-DLMVLDVMMPELNGIE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + D L ++ +T + L D L+KP + R+L+ +N Sbjct: 62 VLKQLRQKDIQLPILMLTAKGDDLDRILGLELGADD-------YLAKPCNPRELLARINA 114 Query: 117 LL 118 +L Sbjct: 115 IL 116 >gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273] gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273] Length = 247 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G+ V S +NG A + + L + D++MP+MDGIEL Sbjct: 21 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 80 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 81 CRRIRE-KYSLPIMFLSA 97 >gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 236 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 18/125 (14%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD D+ L L K GY V++ +NG A D + L+L DI+MP++DGIE Sbjct: 12 KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIE 71 Query: 64 LARRATELDPDLK---VMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 R + +PD+K ++F+T AA + D ++KP R L++ Sbjct: 72 TGRILRQ-NPDIKNTYILFLTARSEEYSEVAAFEVGADD-------YITKPIKPRALMSR 123 Query: 114 VNRLL 118 +N L Sbjct: 124 INALF 128 >gi|300362057|ref|ZP_07058234.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03] gi|300354676|gb|EFJ70547.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03] Length = 221 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ + R L+ A+ Y+V + NG A + ++ + +++ DI+MP MDGI Sbjct: 2 KILLAEDEEQLSRVLVAAMKSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ + V+ +T A + DS A L+KPF L++L+ Sbjct: 62 ALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 235 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L +L G++V +G SA D+VR +++ DI+MP MDG+ Sbjct: 11 RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDGLG 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R + D +F+T +V ++KPF L ++V +N LL Sbjct: 71 LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLL 125 >gi|126443924|ref|YP_001061209.1| chemotaxis response regulator [Burkholderia pseudomallei 668] gi|134280939|ref|ZP_01767649.1| chemotaxis protein CheY [Burkholderia pseudomallei 305] gi|167725894|ref|ZP_02409130.1| chemotaxis response regulator [Burkholderia pseudomallei DM98] gi|167905053|ref|ZP_02492258.1| chemotaxis response regulator [Burkholderia pseudomallei NCTC 13177] gi|254299719|ref|ZP_04967168.1| chemotaxis protein CheY [Burkholderia pseudomallei 406e] gi|126223415|gb|ABN86920.1| chemotaxis response regulator [Burkholderia pseudomallei 668] gi|134247961|gb|EBA48045.1| chemotaxis protein CheY [Burkholderia pseudomallei 305] gi|157809560|gb|EDO86730.1| chemotaxis protein CheY [Burkholderia pseudomallei 406e] Length = 123 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL +D +RR + L +GYEV +G + +K + + L+LTD MP MDGI Sbjct: 5 KKILSVDDTVTIRRLIAHVLTTSGYEVDEAQDGCAGLEKAAKNDYDLILTDYNMPHMDGI 64 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R RA ++ +T L + KP H LV V RL+ Sbjct: 65 SMLRAIRALPAHGATPIVVVTTEFGADLKQQGRDAGATGWMVKPIHPGKLVEMVRRLI 122 >gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 234 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMIHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|295091372|emb|CBK77479.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 526 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 5/85 (5%) Query: 4 KILLAEDDDDMRRFLIKALGK---AGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 K+++A+D+ + R L++ALG EV NG A + + E +L+TDI MP Sbjct: 3 KVIIADDERLICR-LVQALGDWEALDMEVAGLAENGLEALELIERERPDILITDIRMPGC 61 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 DG+EL RRA EL P+L+++ I+G+A Sbjct: 62 DGLELIRRAKELRPELEIVIISGYA 86 >gi|291533552|emb|CBL06665.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 223 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 13/125 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ DM L L +GY+V S +G +A +K E + L+ DI+MP+M GIE Sbjct: 2 KILLAEDEKDMSSALTAILQHSGYDVDSVYDGQAAMEKALENVYDCLIFDIMMPKMSGIE 61 Query: 64 ---LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ L P V+ +T + + D+ A L KPF + +L+ + R Sbjct: 62 ALKIIRQKGNLSP---VIMLTAKSEIDDRITGLDAGAD---DYLMKPFSVGELLARI-RS 114 Query: 118 LTIKN 122 LT +N Sbjct: 115 LTRRN 119 >gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 620 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 44/70 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD Sbjct: 1 MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GIELARRATE 70 GIE+ R+ E Sbjct: 61 GIEVCRKVRE 70 >gi|197120180|ref|YP_002140607.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197089540|gb|ACH40811.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 455 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ R L L K GY + + + G A ++++E F LLLTD+ M + Sbjct: 1 MIGSILIVDDEKGQRDILTAILTKMGYNIQTASGGEEALQQLQQEEFDLLLTDLKMQGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+EL R +P V+ +T + ++ L KP DL+ V R Sbjct: 61 GMELMERVLADNPSQCVVMMTAHGTIDSAVEAMKKGAFDYLEKPLEREDLILTVQR 116 >gi|83954379|ref|ZP_00963099.1| C4-dicarboxylate transport transcriptional regulatory protein [Sulfitobacter sp. NAS-14.1] gi|83841416|gb|EAP80586.1| C4-dicarboxylate transport transcriptional regulatory protein [Sulfitobacter sp. NAS-14.1] Length = 409 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL +DD +R L + L A +VV+ + +A D++ E ++L+D+ MP D Sbjct: 1 MSRTVLLVDDDASVREALAQTLELADIDVVAAGSFVAAKDRITERFDGIILSDMRMPGRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G L A E DPDL V+ +TG + + + L KP LV + R L Sbjct: 61 GFHLLAYAHEQDPDLPVILLTGEGDIPMAVRAMEAGAFDFLEKPCAPAALVTVIERALKT 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 230 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+ + L K GY+V + NG A + R+ L++ D++MP+MDGI Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARKTSPDLIILDVMMPKMDGI 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E R + P+ K F+ A A N + KP R LV+ +N +L Sbjct: 66 EACRIMRGM-PEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAIL 123 >gi|312131206|ref|YP_003998546.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907752|gb|ADQ18193.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1314 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ ED+ D+R +L + G +V NG A+D ++++ +L+D++MPEMD Sbjct: 1059 MDAHLLIVEDNADLRNYLEEIFGST-LKVSMATNGKEAWDMIQKDTPDAVLSDVMMPEMD 1117 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL + L ++ IT AA + + KPF+ + L ++V LL Sbjct: 1118 GLELCSKVKNHPKFAHLPIVLITARAAAVHELEGIESGADDYIVKPFNPKILFSKVTALL 1177 >gi|307706237|ref|ZP_07643053.1| response regulator [Streptococcus mitis SK321] gi|307618378|gb|EFN97529.1| response regulator [Streptococcus mitis SK321] Length = 245 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|301309879|ref|ZP_07215818.1| sigma-54 dependent DNA-binding response regulator Nla6 [Bacteroides sp. 20_3] gi|300831453|gb|EFK62084.1| sigma-54 dependent DNA-binding response regulator Nla6 [Bacteroides sp. 20_3] Length = 455 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KI++A+D+ +R + L + GYEV + NG A D + ++L D MP + Sbjct: 1 MKAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+E + L P+ V+FIT F +V+L D+ + KPF L+ V+R Sbjct: 61 GVEALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSR 116 >gi|300866717|ref|ZP_07111401.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300335317|emb|CBN56561.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 401 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L L K+G++V+ NG SA ++ +L+L D++MP +DG E Sbjct: 11 ILIVDDNQNNLDVLFDLLKKSGFKVLVALNGESAIKQIERIHPTLILLDVMMPGIDGFET 70 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 RR D+ V+F+T + ++KPF ++++ +N LTI+N Sbjct: 71 CRRLKTNPTTQDIPVIFMTALSETVNKVQGFQVGAVDYITKPFQYEEVLSRLNTHLTIRN 130 >gi|146280450|ref|YP_001170603.1| chemotaxis protein CheY [Pseudomonas stutzeri A1501] gi|145568655|gb|ABP77761.1| chemotaxis protein CheY [Pseudomonas stutzeri A1501] gi|327478667|gb|AEA81977.1| chemotaxis protein CheY [Pseudomonas stutzeri DSM 4166] Length = 129 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL ED ++ AL K G+EV+SC +G +A D+V+ L+L D+++P+MDGI Sbjct: 7 RILHVEDVPSIQVVTRIALEKIGGFEVLSCPSGQAALDQVQAFAPDLILLDVMLPQMDGI 66 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EL R+ +L + V+F+TG + +VL+KPF L +++ ++ Sbjct: 67 ELVRQLGDLVDLQQIPVVFLTGHLQPERLQELRQLGVRQVLNKPFDPLQLASQLQQV 123 >gi|158319257|ref|YP_001511764.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139456|gb|ABW17768.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus oremlandii OhILAs] Length = 440 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 54/102 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++ L + L + GY V N A + + E F + L DI+M MDG+ Sbjct: 5 RVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGMDGLA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L +A ++ P+L+++ +TG+A V ++ L+KP Sbjct: 65 LLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPI 106 >gi|46198941|ref|YP_004608.1| two-component response regulator [Thermus thermophilus HB27] gi|46196565|gb|AAS80981.1| two-component response regulator [Thermus thermophilus HB27] Length = 322 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 39/67 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+AEDD R L +AL G EV +G A D E P L+LTD+ MP MD Sbjct: 1 MNPTVLVAEDDPVQRLLLRRALEPLGVEVRLARHGREALDLALEAPPHLVLTDLHMPYMD 60 Query: 61 GIELARR 67 G+EL RR Sbjct: 61 GLELTRR 67 >gi|328953201|ref|YP_004370535.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453525|gb|AEB09354.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 698 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + + K L GY V +NG A + + + L+L+D+ MPE+DG+E Sbjct: 6 KILVVDDESAVLEIIRKILVDRGYIVDVASNGLEALKFLEKSRYDLVLSDVKMPEIDGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ L PDL + ++ FA + + ++KP + DL+ + R L Sbjct: 66 LLQQIGLLYPDLTTVMLSAFATIRDAVAAIKLGAFDYIAKPVYPEDLLYSIERAL 120 >gi|297618456|ref|YP_003703615.1| response regulator receiver protein [Syntrophothermus lipocalidus DSM 12680] gi|297146293|gb|ADI03050.1| response regulator receiver protein [Syntrophothermus lipocalidus DSM 12680] Length = 119 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L+ +D +RR L + + G+EV +G A ++VR+ ++L D+ MP M+ Sbjct: 1 MARRMLVVDDQKGIRRLLEELFKQEGFEVTVAADGRQAVEEVRKSIPDIVLMDMKMPNMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNE 113 GIE + + ++ ++ +T + + L S + + KPF LR++V E Sbjct: 61 GIEASEEILNISENIPIILMTAYGEIELIEKSQKIGVRRYIVKPFDISVLREMVAE 116 >gi|294805707|ref|ZP_06764586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294447030|gb|EFG15618.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1333 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED++++R L++ K Y V +G ++K +E ++L+DI+MP+M G Sbjct: 1081 SSKILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSG 1139 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE+ R ++ + V+ +T A ++KPF+++ L N L+ Sbjct: 1140 IEMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1198 >gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 228 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M++K +L+ ED+ + RFL L G+ NG AY+++ +E F ++L D+++P Sbjct: 1 MDEKTHVLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 MDGIE+ RR + ++ ++ +T AV + ++KPF + +L+ V Sbjct: 61 MDGIEICRRVRTV-SNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARV 115 >gi|283795699|ref|ZP_06344852.1| two-component response regulator [Clostridium sp. M62/1] gi|291077374|gb|EFE14738.1| two-component response regulator [Clostridium sp. M62/1] Length = 526 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 5/85 (5%) Query: 4 KILLAEDDDDMRRFLIKALGK---AGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 K+++A+D+ + R L++ALG EV NG A + + E +L+TDI MP Sbjct: 3 KVIIADDERLICR-LVQALGDWEALDMEVAGLAENGLEALELIERERPDILITDIRMPGC 61 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 DG+EL RRA EL P+L+++ I+G+A Sbjct: 62 DGLELIRRAKELRPELEIVIISGYA 86 >gi|251794174|ref|YP_003008905.1| response regulator receiver protein [Paenibacillus sp. JDR-2] gi|247541800|gb|ACS98818.1| response regulator receiver protein [Paenibacillus sp. JDR-2] Length = 132 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 61/116 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D + +R L++ GY +NG A + V+ E L+L D+ +P MDG+ Sbjct: 4 KKLLIVDDQNGIRVLLMEVFSSEGYNTFQASNGRLALEIVKAENPDLVLLDMKIPGMDGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + ++ D+KV+ +T + + + ++ +KPF + ++ VN L Sbjct: 64 EILKHVKAINRDIKVIMMTAYGELDMIKEATDLGAVMHFTKPFDIDEMRIAVNMQL 119 >gi|146343748|ref|YP_001208796.1| response regulator receiver [Bradyrhizobium sp. ORS278] gi|146196554|emb|CAL80581.1| response regulator receiver (CheY-like protein) [Bradyrhizobium sp. ORS278] Length = 156 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD M+ + + L +AG+ V + +G A + E F L++ DI MP MDG+E Sbjct: 16 ILVVDDDPVMQLTIQRVLERAGHAVATAGDGQKALARFERESFDLVILDIFMPGMDGLEA 75 Query: 65 ARRATELDPDLKVMFITGFAAVALN---PD--SNAPKNAKV--LSKPFHLRDLVNEVNRL 117 R + P + ++ +G A + PD + A K V L KPF DLV V+ Sbjct: 76 MRMILQRAPGVPILMTSGRPQTASSISEPDYLTMATKLGAVSALPKPFKPADLVTMVSDC 135 Query: 118 L 118 L Sbjct: 136 L 136 >gi|70729028|ref|YP_258762.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas fluorescens Pf-5] gi|68343327|gb|AAY90933.1| sigma-54 dependent DNA-binding response regulator FleR [Pseudomonas fluorescens Pf-5] Length = 468 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R L L AG++ + + A + V EPFSL+++D+ MP MD Sbjct: 1 MAIKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEPFSLVVSDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV ++ A L KPF R L++ V R Sbjct: 61 GHQLLGLLRARQPQLPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPRALLDLVAR 116 >gi|148545534|ref|YP_001265636.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida F1] gi|148509592|gb|ABQ76452.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida F1] Length = 468 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +VV+ D++ + ++++DI MP +DG++ Sbjct: 12 QVILVDDDPHLRQALSQTLDLAGLKVVALPEAQGLADRIEADWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + D +L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 72 LLEQLHGRDSELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFATDALLDSVRRALALR 129 >gi|320190898|gb|EFW65548.1| Response regulator of zinc sigma-54-dependent two-component system [Escherichia coli O157:H7 str. EC1212] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+AED+ + R L L GY+V +G A + R + L++ DI++P Sbjct: 1 MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ RR D ++ +T ++V ++KPF + +L+ + L I Sbjct: 61 GIEILRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRI 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|325102980|ref|YP_004272634.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324971828|gb|ADY50812.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 234 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+ILL ED++ + + L G+ V + +G A +EE F+L++ D+++PE+DG Sbjct: 5 QRILLMEDEEHLLEAIKLNLEMEGFFVRAVTDGKKALKVFKEEKFNLIILDVMVPEIDGF 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 ++A + ++ +MF+T + + + K A L+KPF+L +L+ VN L+ Sbjct: 65 QVAETIRLENSEVPIMFLTA-KNTSEDRITGLKKGADDYLTKPFNLEELILRVNNLI 120 >gi|307720996|ref|YP_003892136.1| response regulator receiver protein [Sulfurimonas autotrophica DSM 16294] gi|306979089|gb|ADN09124.1| response regulator receiver protein [Sulfurimonas autotrophica DSM 16294] Length = 218 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KILL EDD+ + LI+ L +EV+ +G +A D E F+LLL D+ +P ++ Sbjct: 1 MSNKILLVEDDEILSETLIELLENEAFEVLHVKDGEAALDATFENKFTLLLLDVNVPLLN 60 Query: 61 GIEL---ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E R + ++ P + + ++ A++A D A K KPF +L+ ++ L Sbjct: 61 GFEFLKSLRESGDMTPAIFLTSLSDLASLANGFDVGADDYIK---KPFDFDELLIRIHAL 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|290352221|dbj|BAI78821.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ E + ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEGEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|300774064|ref|ZP_07083933.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300760235|gb|EFK57062.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 155 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 2 NQKI-LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N+KI +L DD++ KA + YEV + +GA A + V++ P ++++TD MPEM Sbjct: 4 NKKITVLYVDDEENNLLSFKATFRLKYEVHTAISGADAIEIVKKNPVNVIITDQRMPEMT 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDL 110 G+E +LDP + +TG+ +A D+ N K L+KP+ +L Sbjct: 64 GVEFLEEIIKLDPHPMRILLTGYTDMAAVIDAVNKGKIFHYLNKPWSEEEL 114 >gi|197119311|ref|YP_002139738.1| substrate-binding sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088671|gb|ACH39942.1| periplasmic substrate-binding sensor histidine kinase response regulator, PAS and Hist_Kin_Sens domain-containing protein [Geobacter bemidjiensis Bem] Length = 1279 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 ++ ILLAEDD +RR + L + GY V+ +G+ K + SL+L D++MP Sbjct: 1159 SETILLAEDDSGVRRLVESLLEQYGYRVILAADGSECVQKYFDHRDEISLILMDVIMPGK 1218 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E +DP +V++ +G+ A + ++ ++ KP L+ +V +L Sbjct: 1219 NGREAFEEIRTIDPKARVLYSSGYTADFMKIRGVFEESVDLVMKPVQPVALLKKVREVL 1277 >gi|146298401|ref|YP_001192992.1| two component, sigma54 specific, Fis family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152819|gb|ABQ03673.1| two component, sigma54 specific, transcriptional regulator, Fis family [Flavobacterium johnsoniae UW101] Length = 453 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 4/105 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + L K L K YEV + + A ++ E F L+LTD+ +P+ DGI Sbjct: 3 KILVIEDDISFCKLLEKFLTKNKYEVSVAFSASEARAIIKNESFDLILTDLRLPDSDGIG 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN--AKVLSKPFH 106 L P + V+ +TG++ V N A KN A +SKPF+ Sbjct: 63 LMSEFKNEYPQVPVILMTGYSDV--NTAVKAIKNGAADYISKPFN 105 >gi|307301499|ref|ZP_07581259.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium meliloti BL225C] gi|152173|gb|AAA63513.1| activator protein [Sinorhizobium meliloti] gi|306903556|gb|EFN34144.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sinorhizobium meliloti BL225C] Length = 460 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 57/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+R+ + + L AG+ V S + A ++ + ++++DI MP MDG+ L Sbjct: 7 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAELSADFAGIVISDIRMPGMDGLAL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + LDPDL ++ +TG + + + ++KPF LV R Sbjct: 67 FGKVLALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARR 118 >gi|83943244|ref|ZP_00955704.1| C4-dicarboxylate transport transcriptional regulatory protein [Sulfitobacter sp. EE-36] gi|83846252|gb|EAP84129.1| C4-dicarboxylate transport transcriptional regulatory protein [Sulfitobacter sp. EE-36] Length = 409 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL +DD +R L + L A +VV+ + +A D++ E ++L+D+ MP D Sbjct: 1 MSRTVLLVDDDASVREALAQTLELADIDVVAAGSFVAAKDRITERFDGIILSDMRMPGRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G L A E DPDL V+ +TG + + + L KP LV + R L Sbjct: 61 GFHLLAYAHEQDPDLPVILLTGEGDIPMAVRAMEAGAFDFLEKPCAPAALVTVIERALKT 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|311893560|dbj|BAJ25968.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD+ +RR + AL + GY V + +G S + RE LL+ D+++P +DGI Sbjct: 22 RVLLVEDDETIRRSIALALERYGYRVATAPDGLSGLEAFREGGHDLLILDVMLPHLDGIG 81 Query: 64 LARRATE 70 L RR E Sbjct: 82 LCRRIRE 88 >gi|262381398|ref|ZP_06074536.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|262296575|gb|EEY84505.1| two-component system response regulator [Bacteroides sp. 2_1_33B] Length = 455 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KI++A+D+ +R + L + GYEV + NG A D + ++L D MP + Sbjct: 1 MKAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+E + L P+ V+FIT F +V+L D+ + KPF L+ V+R Sbjct: 61 GVEALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSR 116 >gi|57233902|ref|YP_182006.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224350|gb|AAW39407.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 180 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 12/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R + L G+ V NG A ++++ + F L+ D+ MP ++G EL Sbjct: 61 VLVIDDESTVRSLFKETLEDQGHAVSMAKNGDEALEQLQSKDFDLVFLDLKMPGLNGAEL 120 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN------APKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + P L V ITG+ PDS+ A V++KPF D++N L Sbjct: 121 YQKIRAIKPKLPVTIITGY------PDSDTMAKVLAQGPFGVMNKPFGEMDIINATKNFL 174 Query: 119 TI 120 I Sbjct: 175 RI 176 >gi|319956805|ref|YP_004168068.1| two component transcriptional regulator, winged helix family [Nitratifractor salsuginis DSM 16511] gi|319419209|gb|ADV46319.1| two component transcriptional regulator, winged helix family [Nitratifractor salsuginis DSM 16511] Length = 219 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI L ED+ +R + + L GY V +G AY+ +R++ + L + DI P +DG+ Sbjct: 2 KIGLLEDELMLREAIREYLEATGYRVDVYEDGLEAYEAMRQKRYDLYILDINTPGIDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L R + +FI+ + + L KPFHL++L + RLL I + Sbjct: 62 LLERLQREKIFVPTIFISAITQIEQISRAYELGCYDYLKKPFHLKELTLHIERLLKIAD 120 >gi|261211327|ref|ZP_05925615.1| chemotaxis protein CheV [Vibrio sp. RC341] gi|260839282|gb|EEX65908.1| chemotaxis protein CheV [Vibrio sp. RC341] Length = 308 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV----REEP----FSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV+S +G AY+K+ RE P SL+++DI Sbjct: 182 RRILIADDSSVARKQVQRAIESIGFEVISTKDGKDAYEKLLEMSREGPILNQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR+ EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRSNELK-DLYVILHSSLSGV 275 >gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] Length = 242 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G+ V S +NG A + + L + D++MP+MDGIEL Sbjct: 16 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRIRE-KYSLPIMFLSA 92 >gi|226314437|ref|YP_002774333.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097387|dbj|BAH45829.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 11/114 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD + L +L GYEVV C +A + ++++ F L L D+ +P+ +G E Sbjct: 2 KVLVVEDDKTIAEGLHYSLSSEGYEVVLCEGKQTALEAIKQQRFDLYLLDLTLPDGNGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVN 112 + E + D V+F+T A + + N + + ++KPF +R+L++ Sbjct: 62 ICEYVKE-NQDAPVIFLT-----ACDDEINVVRGLDMGADDYITKPFRIRELIS 109 >gi|253702327|ref|YP_003023516.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251777177|gb|ACT19758.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 379 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +K +L DD+ + R L K + Y+V+ +GA A + ++LTD++MPEMD Sbjct: 16 IEKKTVLIVDDEAVIRDLCKRV-LHDYDVIEAGDGAEALEIFLRGGIDVILTDVMMPEMD 74 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+EL + E +P + V+ +TGFA L + ++KP +L L + V++ L Sbjct: 75 GLELLKNLKEREPTVVVIIMTGFADKELILKALKADADDFITKPLNLLQLKSAVDKALVK 134 Query: 121 K 121 K Sbjct: 135 K 135 >gi|39997496|ref|NP_953447.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984387|gb|AAR35774.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 1015 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ +LL ED+ + + L + GY V+ A E LL+TD++MPEM Sbjct: 896 NETVLLVEDEPAILAMTTEILTQLGYAVLQAPTPTEALRIGCEHKGEIHLLMTDVIMPEM 955 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA+ ++ P ++ ++++G+ + ++P + L KPF L ++ +L Sbjct: 956 NGRELAKSLSQFYPRIRCLYMSGYTSDIISPHGVLNDSVHFLQKPFDFTTLSLKLREVL 1014 >gi|77458870|ref|YP_348376.1| response regulator receiver domain-containing protein [Pseudomonas fluorescens Pf0-1] gi|77382873|gb|ABA74386.1| putative two-component response regulator [Pseudomonas fluorescens Pf0-1] Length = 121 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 IL+ EDD +R ++ L + ++V+ + A D +++ + L++TD+ +P MDG Sbjct: 8 ILVVEDDAIVRMLIVDVLEELEFKVLEADGSEQALDILKDVNQHIDLMMTDVGLPIMDGR 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + P L ++F +G+A P + V+ KPF + L ++V +L Sbjct: 68 QLATEARNIRPALPILFASGYAETI-----EVPADMHVIGKPFSIDQLRDKVKAVL 118 >gi|332521810|ref|ZP_08398261.1| sigma-54 factor interaction domain-containing protein [Lacinutrix algicola 5H-3-7-4] gi|332042640|gb|EGI78841.1| sigma-54 factor interaction domain-containing protein [Lacinutrix algicola 5H-3-7-4] Length = 387 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L+K L + Y V +G +K++++ + L+L DI MP+MDG Sbjct: 3 KILVIEDEAAIRRVLVKILTEENDKYAVEEAEDGLVGIEKIKKDDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ ++ P++ ++ I+G + ++ +SKP L L+N V L Sbjct: 63 VEVLEAVRKIKPEIPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 119 >gi|324115436|gb|EGC09381.1| sigma-54 interaction domain-containing protein [Escherichia coli E1167] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|294625821|ref|ZP_06704438.1| two-component system response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599896|gb|EFF44016.1| two-component system response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 457 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 124 >gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 231 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 62/116 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D+ ++ + AL G+EV S ++GA A +VR+ LLL D+++P+M+G Sbjct: 6 HRVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGF 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ARR + ++F+T A ++KPF L +LV + +L Sbjct: 66 EVARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTIL 121 >gi|283781778|ref|YP_003372533.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pirellula staleyi DSM 6068] gi|283440231|gb|ADB18673.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pirellula staleyi DSM 6068] Length = 478 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 52/83 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ++D + + + ++L + GY +G +V+++ F +++TD+VM ++DG+E Sbjct: 17 RVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVDGME 76 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + RA E P+ +V+ +TG A V Sbjct: 77 VLARAKEALPEAEVIMVTGHATV 99 >gi|238854218|ref|ZP_04644563.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] gi|238833154|gb|EEQ25446.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] Length = 221 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ + R L+ A+ Y+V + NG A + ++ + +++ DI+MP MDGI Sbjct: 2 KILLAEDEEQLSRVLVAAMQSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ + V+ +T A + DS A L+KPF L++L+ Sbjct: 62 ALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|296121892|ref|YP_003629670.1| sigma-54 factor interaction domain-containing protein [Planctomyces limnophilus DSM 3776] gi|296014232|gb|ADG67471.1| sigma-54 factor interaction domain-containing protein [Planctomyces limnophilus DSM 3776] Length = 473 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS----AYDKVREEPFSLLLTDIVMPEM 59 ++L+ ++D+ + + +L + GY+ + GA A D + E F +++T+++M E+ Sbjct: 16 RVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITELMMDEV 75 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DG+E+ RR+ PD +V+ +TG A++ + L+KP + +L V+R Sbjct: 76 DGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDR 132 >gi|218702639|ref|YP_002410268.1| transcriptional regulatory protein ZraR [Escherichia coli IAI39] gi|218372625|emb|CAR20500.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator ; sigma54 interaction protein [Escherichia coli IAI39] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] Length = 232 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 M +KIL+ ED+ +R F+ L + GYE++ GA A +K+ E S+ L D+++P+M Sbjct: 1 MKEKILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + + + ++ +T A + + KPF +++L+ V LL Sbjct: 61 SGIEVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALL 119 >gi|218780774|ref|YP_002432092.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218762158|gb|ACL04624.1| Response regulator receiver domain protein (CheY-like) [Desulfatibacillum alkenivorans AK-01] Length = 124 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 57/112 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ ++ + + L G G SA +K RE + +++ D+ MP MDGIE Sbjct: 2 RILLVDDEVELVSAMAERLNMRGVNADYVTCGKSAVEKARECHYDVMVVDLRMPGMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + E+ PD +F+TG+ + S A L KP + L+ +++ Sbjct: 62 VMKLVKEISPDTGFVFLTGYGSEEQKSASEAAGANCYLMKPVKISLLMEKID 113 >gi|162449444|ref|YP_001611811.1| response regulator [Sorangium cellulosum 'So ce 56'] gi|161160026|emb|CAN91331.1| response regulator [Sorangium cellulosum 'So ce 56'] Length = 127 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 +IL+ EDD D+R L + L GY+V +GA A +R + P +L+L D++MP MDG Sbjct: 7 RILVVEDDLDIRSILTQLLVFEGYDVEEAADGAEALALLRRDAPPALILLDLMMPVMDGW 66 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +L R + DP L + + +A V + +++ + A +L KP + L+ V+R+ Sbjct: 67 QL-RAELQRDPALASIPVVIVSADVRVEQEASRLRVAGLLKKPLQIEPLLELVHRI 121 >gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803] gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803] Length = 227 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ D+ + L GY V++ +NGA A +++ L++ D++MPEMDGIE Sbjct: 7 QILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKKPHLIILDVMMPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + ++ PD++ IT A + A +A ++KP + LV++V LL Sbjct: 67 ACEQIRKM-PDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALL 123 >gi|116629368|ref|YP_814540.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|282850958|ref|ZP_06260332.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311110978|ref|ZP_07712375.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22] gi|116094950|gb|ABJ60102.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|282557910|gb|EFB63498.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311066132|gb|EFQ46472.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22] Length = 221 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ + R L+ A+ Y+V + NG A + ++ + +++ DI+MP MDGI Sbjct: 2 KILLAEDEEQLSRVLVAAMQSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ + V+ +T A + DS A L+KPF L++L+ Sbjct: 62 ALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|319652280|ref|ZP_08006398.1| response regulator [Bacillus sp. 2_A_57_CT2] gi|317396103|gb|EFV76823.1| response regulator [Bacillus sp. 2_A_57_CT2] Length = 223 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD ++++ + L + GY+V+ NN A + E+ L + D++MP MDG E Sbjct: 2 KILVVDDDVNIQKLVTIHLNREGYQVLRANNAQEALALLEEQTADLAVVDVMMPGMDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R T D + V+ +T + + + KPF +R+L+ V Sbjct: 62 LTRLLTN-DFGIPVILLTAKGQLGDKEQGFLSGSEDYIVKPFEVRELLFRV 111 >gi|258591260|emb|CBE67557.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 234 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ ++RR L + L + GY V +G A E +++TD+ MP +DG+E Sbjct: 5 RILLVDDEPEIRRLLSRHLQRLGYTVREAGDGEEAVAAATAEIPDVVITDMSMPRLDGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L R +DP L V+ +TG ++ Sbjct: 65 LLERLRSMDPGLPVIVLTGHGSI 87 >gi|289672181|ref|ZP_06493071.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae FF5] Length = 197 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALRR 130 >gi|266620749|ref|ZP_06113684.1| two-component response regulator YesN [Clostridium hathewayi DSM 13479] gi|288867609|gb|EFC99907.1| two-component response regulator YesN [Clostridium hathewayi DSM 13479] Length = 511 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+++A+D+ +R + + + K G E+ C NG AYD + +E ++LTDI MP MD Sbjct: 3 KMIIADDERVIRESISRLIDWEKLGVELTGLCRNGLEAYDMIIDEDPDIVLTDIRMPGMD 62 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+EL R+ + +D D + + ++G+ Sbjct: 63 GLELIRKVSLMDLDTRFILLSGYG 86 >gi|255035592|ref|YP_003086213.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254948348|gb|ACT93048.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 226 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 14/121 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ + FL K L + GY V +GA A +++ + L + D+++P++DG + Sbjct: 2 KILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGFQ 61 Query: 64 LAR--RATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + R ++D + ++ G A A+ L D L+KP H +L++ +N Sbjct: 62 LTQLIRYKKIDTPVLILSALGEADDKIKALDLGADD-------YLTKPIHFPELLSRINA 114 Query: 117 L 117 L Sbjct: 115 L 115 >gi|196231391|ref|ZP_03130250.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196224727|gb|EDY19238.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 186 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 13/124 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+ ++ L KA + + G A ++++ F D+ +P++ G E+ Sbjct: 65 VLVVDDDEALQSMFKLFLKKANFSRLVVGTGKEALAALQKQKFDFCFLDLQLPDITGDEI 124 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKN------AKVLSKPFHLRDLVNEVNRLL 118 + A E+DPDL ++ ITG+ PDS N VL KP + L N+V R+L Sbjct: 125 YKYAKEIDPDLPIVIITGY------PDSQMLDNILKHGPVTVLKKPLQVEQL-NQVLRIL 177 Query: 119 TIKN 122 K+ Sbjct: 178 GHKS 181 >gi|170725971|ref|YP_001759997.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169811318|gb|ACA85902.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella woodyi ATCC 51908] Length = 452 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ V + A K++ E F ++++D+ M + G+ Sbjct: 5 KLLLVEDDHSLREALLDTLLIAHYDCVDVASAEDAIVKLKHESFDMVISDVQMEGVGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 L + P L ++ +T +A + + NA K V L+KPF L+N+V+R L K Sbjct: 65 LLNYLQQHHPQLPMLLMTAYATI--DNAVNAIKLGAVDYLAKPFAPEVLLNQVSRYLKPK 122 >gi|83952334|ref|ZP_00961065.1| hypothetical protein ISM_09291 [Roseovarius nubinhibens ISM] gi|83836007|gb|EAP75305.1| hypothetical protein ISM_09291 [Roseovarius nubinhibens ISM] Length = 446 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 57/116 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL +D+D +R ++L +V + + A V + +L+TDI MP MDG+ Sbjct: 4 ETILFVDDEDHLRLAAAQSLQLEDLDVACFADASEALSHVARDFPGILVTDIRMPGMDGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RA E+D + V+ +TG V L S L KP+ LV+ V R L Sbjct: 64 ELMARALEIDSAIPVILVTGHGDVDLAVQSMRDGAYDFLEKPYSPTRLVSSVRRAL 119 >gi|320352623|ref|YP_004193962.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320353275|ref|YP_004194614.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320121125|gb|ADW16671.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320121777|gb|ADW17323.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 146 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 60/115 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL +D+ D L L G +V + +G A + +++ + ++ D+ MP +D Sbjct: 5 MEAKVLLVDDEQDFLETLSSRLEMRGLKVSAVTSGEQAVTEAKQQDYDAIIVDLAMPGID 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E +R +P+ +++ +TG A+V ++ L KP L +L++++ Sbjct: 65 GLETLKRIKADNPNAEIIMLTGQASVQSGVEAMKLGAGDFLQKPVELSELMDKIG 119 >gi|317052666|ref|YP_004113782.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316947750|gb|ADU67226.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 130 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ +R L L GY V + NG ++V +E F L++TDI MP + G++ Sbjct: 9 RILVVEDDETLRNNLTTILALEGYSVATAENGQRGIERVSKEKFDLIITDISMPRLGGVQ 68 Query: 64 L---ARRATELDPDLKVMFITG 82 + R+ + L+ D ++ +G Sbjct: 69 MIDSIRKRSFLNADTPIIVFSG 90 >gi|260779258|ref|ZP_05888150.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605422|gb|EEX31717.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio coralliilyticus ATCC BAA-450] Length = 451 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 I L EDD +R+ + L AG+++ + +NG +A ++ + F +++D+ +P ++G+ Sbjct: 7 HSIALIEDDPIVRQTTAQWLQLAGFDITTFDNGQAALAEITQHKFMAIISDVRLPGINGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ + P + V+ ITG V + + + KPF L VN+ + Sbjct: 67 ELQQQVKQQAPGIPVILITGHGDVDMAVKALQQGAYDFIEKPFEPERLAQTVNQAI 122 >gi|302879056|ref|YP_003847620.1| response regulator receiver and Hpt phospho transfer protein [Gallionella capsiferriformans ES-2] gi|302581845|gb|ADL55856.1| response regulator receiver and Hpt phospho transfer protein [Gallionella capsiferriformans ES-2] Length = 318 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q ILLAED++ R +++ L GY +G A + R + +LLTD MP MDG Sbjct: 66 GQLILLAEDNETNREVILEQLRLLGYAAEVATDGVEALNMWRSGRYGMLLTDCHMPNMDG 125 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 EL R + + D + I A A+ ++ ++ + LSKP L +E+ R+L Sbjct: 126 FELTRAIRDAEVDGAHLPIIAVTANAMQGEAQHCRSCGMDDYLSKPLRL----DELGRML 181 Query: 119 T 119 + Sbjct: 182 S 182 >gi|291285419|ref|YP_003502237.1| transcriptional regulatory protein ZraR [Escherichia coli O55:H7 str. CB9615] gi|209751638|gb|ACI74126.1| response regulator HydG [Escherichia coli] gi|209751644|gb|ACI74129.1| response regulator HydG [Escherichia coli] gi|290765292|gb|ADD59253.1| transcriptional regulatory protein ZraR [Escherichia coli O55:H7 str. CB9615] gi|320639095|gb|EFX08735.1| transcriptional regulatory protein ZraR [Escherichia coli O157:H7 str. G5101] gi|320644489|gb|EFX13552.1| transcriptional regulatory protein ZraR [Escherichia coli O157:H- str. 493-89] gi|320649808|gb|EFX18329.1| transcriptional regulatory protein ZraR [Escherichia coli O157:H- str. H 2687] gi|320655141|gb|EFX23097.1| transcriptional regulatory protein ZraR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660785|gb|EFX28239.1| transcriptional regulatory protein ZraR [Escherichia coli O55:H7 str. USDA 5905] gi|320665903|gb|EFX32934.1| transcriptional regulatory protein ZraR [Escherichia coli O157:H7 str. LSU-61] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|227536214|ref|ZP_03966263.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772173|ref|ZP_07082043.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227244111|gb|EEI94126.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760476|gb|EFK57302.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 234 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 10/121 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+ILL ED++ + + L GY V + +G A +EE F+L++ D+++PE+DG Sbjct: 5 QRILLVEDEEHLLEAIKLNLELEGYRVTTATDGKKALKVFKEERFNLIILDVMIPEIDGF 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 ++A + ++ +MF+T A N + K L KPF+L +L+ V L Sbjct: 65 QVAETIRLQNSEVPIMFLT-----AKNSSEDRITGLKKGADDYLVKPFNLEELILRVGNL 119 Query: 118 L 118 + Sbjct: 120 V 120 >gi|307592364|ref|YP_003899955.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306986009|gb|ADN17889.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 125 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 9/128 (7%) Query: 1 MNQKILLAEDDDDMRRFL---IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++++L+ +D+ +R+ +KA+ AG+EV+ +G+ + EP ++L D++MP Sbjct: 1 MSKRVLIIDDEMGIRKITQISLKAI--AGWEVLVAASGSEGLSIAQTEPLDVILLDVMMP 58 Query: 58 EMDGIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 EMDGI ++ + +P + + +T A V+ + +++KPF DLV ++ Sbjct: 59 EMDGITTFKQL-QSNPSTRAIPTILLTAKAHVSEQQEFTKLPVKGIITKPFKAPDLVKQM 117 Query: 115 NRLLTIKN 122 LL K+ Sbjct: 118 KSLLNWKD 125 >gi|188583018|ref|YP_001926463.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179346516|gb|ACB81928.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 708 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPE 58 ++Q IL+ ED+ ++ RF + L GY +A ++ PF + +D+VMP Sbjct: 579 VDQCILVVEDNIEVGRFCTQILHDLGYGTFLAQTAEAALAEIEAVPFRFDAVFSDVVMPG 638 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 M G+ELA+R EL P+L V+ +G++ V + D++ +++ KP+ L Sbjct: 639 MGGVELAKRLRELHPELPVVLTSGYSHVLASDDAHG---FELVRKPYSAEQL 687 >gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483] gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483] Length = 228 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ + +P + ++ +T + D + KPF R+L + LL Sbjct: 64 AKEIRKTNPHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|114765552|ref|ZP_01444660.1| two-component response regulator [Pelagibaca bermudensis HTCC2601] gi|114542145|gb|EAU45177.1| two-component response regulator [Roseovarius sp. HTCC2601] Length = 213 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVREEPFSLLLTDIVMPE 58 NQ I + +DD D+R L +AL + G+EV + +G +AYD E + L+ D MP Sbjct: 5 NQMIFIVDDDQDIRTSLTRALTQRGFEVEAFASGREFLAAYDG---EQAACLVLDHGMPG 61 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G+EL L V+FITG V + + L KPF L+ + L Sbjct: 62 MSGLELQALLNGQGSPLAVVFITGHGGVPESVQAMKAGAVDFLEKPFRQSVLIERIETAL 121 Query: 119 TIKN 122 I + Sbjct: 122 EIAS 125 >gi|332703323|ref|ZP_08423411.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio africanus str. Walvis Bay] gi|332553472|gb|EGJ50516.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio africanus str. Walvis Bay] Length = 1157 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMP 57 +++IL EDD D + K LG+ GY VV+C +A + + F L++TD MP Sbjct: 1031 SERILFVEDDLDQLETIPKVLGRLGYSVVACRGADAALAALSSSDGDGRFDLVVTDFDMP 1090 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E G++ +R ++ P L V+ ++G A++ VL+KP+ R L + + Sbjct: 1091 EATGVDFSRTLHQIRPGLPVILVSGRRG-AIDAAMGVSNIRHVLTKPYSGRGLSEAIRAV 1149 Query: 118 L 118 L Sbjct: 1150 L 1150 >gi|330953745|gb|EGH54005.1| helix-turn-helix, Fis-type [Pseudomonas syringae Cit 7] Length = 391 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 54/116 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL EDD +R L + L AGY + + A PFSL+++D+ MP MD Sbjct: 1 MPINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEARPFSLVISDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +L P L V+ +T AV ++ A L KPF + L+ V R Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPKALIALVGR 116 >gi|309790695|ref|ZP_07685246.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227289|gb|EFO80966.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 255 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +I++ EDD R L L +AGY + + +A D +R F LL+TD+ +P M+G Sbjct: 3 QHRIIIVEDDGVTRLMLQLELQQAGYLTIGVPDPQTALDFLRHTHFDLLITDLDLPSMNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ A L P + V+ +T A+++ + + + L KP L+ VN +L Sbjct: 63 LQFISEARTLVPQIAVVILTATASLSSAVAALNQQVQRYLIKPMAPDVLLQHVNTIL 119 >gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V + N+G DK + ++L D++MP+MDG Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMPKMDG 62 Query: 62 IELARRATELDPDLKVMFIT 81 +E+ RR +L + VM +T Sbjct: 63 LEVCRRIRKL-GNTPVMMLT 81 >gi|218134349|ref|ZP_03463153.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC 43243] gi|217989734|gb|EEC55745.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC 43243] Length = 223 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 3 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGALALEILDKEYIDLIISDIMMPVMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 63 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 117 >gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 222 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + R + L +AGY V +G A+ + E + L + D+ +P+MDG+ Sbjct: 2 RILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDYDLAVLDLGLPKMDGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R DL V+ +T A A + L+KPF + +L+ V LL Sbjct: 62 VLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALL 116 >gi|197124378|ref|YP_002136329.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196174227|gb|ACG75200.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 138 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 7/117 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDDDD+R + L AG+ V GA A + +++ D+++P+ G Sbjct: 9 QPKVLLVEDDDDLRVAMAGCLAGAGFHVTLVATGADAVRAALRDHPEVMVIDVMLPDSGG 68 Query: 62 IELA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + +A R EL+ + V+F TG AA A+ AP A VL KPF R L++ V Sbjct: 69 LGVAEALHRYPELE-QVPVLFTTGLAAPAVK-ALLAP--APVLFKPFGRRQLLSAVR 121 >gi|116750365|ref|YP_847052.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116699429|gb|ABK18617.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 981 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++ILL +D+D + L GY+V + A + R +P F L++TD MP M Sbjct: 858 ERILLVDDEDVLVEMGKSVLEHLGYKVRGVTDSVEALELFRAQPDRFDLVITDYTMPRMT 917 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-KPFHLRDLVNEVNRLL 118 G+ LAR + PD+ ++ TGF+ + ++ + + L+ KP +R++ + +L Sbjct: 918 GVALAREMMRIRPDIPIVLCTGFSE-RVTEEAVKEEGIRTLAMKPLEMREIAEVIRGIL 975 >gi|317477120|ref|ZP_07936361.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316906663|gb|EFV28376.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1319 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD + +L LG Y + +C+NG A + F L+++DIVMP MDG E Sbjct: 1072 RILLVDDDRALCEYLQDKLGDI-YRITTCHNGQEALQVAMSQTFDLVISDIVMPIMDGFE 1130 Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R + P L V+ +T + K LSKPF++ +L+ Sbjct: 1131 LLHR-IKRTPQIGYLPVILLTSQTELENRIKGYKEKADAFLSKPFNIDELM 1180 >gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 236 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 26/143 (18%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++++ EDD+ + L + L K GYEV ++G + + F+L++ DI++PEMD Sbjct: 1 MGERLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF---------- 105 G L + ++ D+ V+ I+ A + + K K+ ++KPF Sbjct: 61 GFTLCKNIRWINEDIPVVIIS-----AKQTEMDKVKGLKLGADDYITKPFSLIEVSARIE 115 Query: 106 -HLR-----DLVNEVNRLLTIKN 122 HLR D + VN +L KN Sbjct: 116 AHLRRYKKVDRESAVNGILKFKN 138 >gi|260858114|ref|YP_003232005.1| fused DNA-binding response regulator ZraR in two-component regulatory system with ZraS: response regulator/sigma 54 interaction protein [Escherichia coli O26:H11 str. 11368] gi|257756763|dbj|BAI28265.1| fused DNA-binding response regulator ZraR in two-component regulatory system with ZraS: response regulator/sigma 54 interaction protein [Escherichia coli O26:H11 str. 11368] gi|323155546|gb|EFZ41723.1| transcriptional regulatory protein zraR [Escherichia coli EPECa14] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|322418727|ref|YP_004197950.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125114|gb|ADW12674.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 258 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+ + R + L + GY + +G A +KVR E F L++ D+++P + G E+ Sbjct: 8 ILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVRMEKFDLIILDVMLPGIGGFEV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ LD + V+ +T +A + A L KPF+L++ + V+ +L Sbjct: 68 CQKIRALDSRVPVLMLTARSAESDRISGLAAGADDYLIKPFNLKEFLLRVSGML 121 >gi|322420720|ref|YP_004199943.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320127107|gb|ADW14667.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 465 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R L L ++GY+V +G K R+E F+++L D+ MP +DGIE Sbjct: 11 KVLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKMPGVDGIE 70 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R RA + P++ +MF TG ++ + L+KP L +L Sbjct: 71 TLRQMRAETIVPEI-IMF-TGHGSIETAVECIKYGAYDYLTKPVKLDEL 117 >gi|296108932|ref|YP_003615881.1| response regulator receiver protein [Methanocaldococcus infernus ME] gi|295433746|gb|ADG12917.1| response regulator receiver protein [Methanocaldococcus infernus ME] Length = 125 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K L+ +D MR L K L G VV +NG A +K +E L+ DIVMPEMDG Sbjct: 6 KTLVVDDSAFMRNILKKILTSTGKFVVVGEASNGKEAIEKAKELQPDLITMDIVMPEMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I R ++ P++K++ T ++ + KPF + ++ E+N+L Sbjct: 66 ITATREIKKILPNVKIVMCTSIDQEKKVIEALEAGADGYIVKPFQAQKVIEELNKLF 122 >gi|255532413|ref|YP_003092785.1| sigma-54 factor interaction domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345397|gb|ACU04723.1| sigma-54 factor interaction domain-containing protein [Pedobacter heparinus DSM 2366] Length = 468 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R L + L YEV +NG + ++++ F L+L DI M +MDG+E Sbjct: 3 KLLIIDDERAIRSTLREILEYENYEVEDIDNGIDGLELIKKKKFDLVLCDIKMNKMDGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +A PDL + I+G V +++ +SKP L L L+T++N Sbjct: 63 VLEQALAYSPDLPFIMISGHGTVETAIEASKKGAFDFISKPPDLNRL------LITVRN 115 >gi|221196311|ref|ZP_03569358.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] gi|221202984|ref|ZP_03576003.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans CGD2] gi|221176918|gb|EEE09346.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans CGD2] gi|221182865|gb|EEE15265.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] Length = 588 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + IL+ ED+ D+R I+ L + GY+V+S +G +A ++ + F LL TD+VMP + Sbjct: 462 ETILVVEDNCDVRLAAIEMLARLGYKVLSAQDGDAALRLIQSGQRFDLLFTDVVMPGAVR 521 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR A+ V+F +G+ + D + ++ KP+ L DL V L Sbjct: 522 SSELARIASAPPYRAGVLFASGYTRDIIFHDGKLDEGVALIGKPYALDDLARAVRDAL 579 >gi|188587839|ref|YP_001922138.1| response regulator [Clostridium botulinum E3 str. Alaska E43] gi|188498120|gb|ACD51256.1| response regulator [Clostridium botulinum E3 str. Alaska E43] Length = 218 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ EDD+ + + L GY+ +G A++ ++EEPF L+L DI++P MD Sbjct: 1 MKINVLIIEDDEAISNLIKINLSMVGYQSKQLFDGLEAFNLLKEEPFDLILMDIMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL ++ +L ++ V+F+T +A + KPF +L+ + +L Sbjct: 61 GFELMKKIKDL--NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVL 116 >gi|167630095|ref|YP_001680594.1| chea signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592835|gb|ABZ84583.1| chea signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 804 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLA+D R L + + GYEVV+C NGA A+ +++ + +L+D+ MPEMDG Sbjct: 666 RVLLADDSITTRVQLKRVVESGGYEVVACVNGAEAWKRLQLQDVQAVLSDVEMPEMDGFA 725 Query: 64 LAR--RATELDPDLKVMFITGFAAVA 87 L R + DL V+ IT + A Sbjct: 726 LTEKIRQSPSLKDLPVILITSLSCDA 751 >gi|158522342|ref|YP_001530212.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158511168|gb|ABW68135.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 142 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+ +D+ D + + L +V + G A + +E + ++ D+ MP MD Sbjct: 1 MSDKVLIVDDEKDFLDLISERLKARDVDVSTATRGEDAVSLIDKESYDAVVLDLQMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+E +R E +PD++V+ +TG A V ++ ++ KP L +++ + R Sbjct: 61 GLEALKRIKEKNPDVQVILLTGHATVEKGVEAMKLGAMDLIEKPADLPTIIDRIKR 116 >gi|187926232|ref|YP_001892577.1| response regulator receiver protein [Ralstonia pickettii 12J] gi|241665720|ref|YP_002984079.1| response regulator receiver protein [Ralstonia pickettii 12D] gi|187727986|gb|ACD29150.1| response regulator receiver protein [Ralstonia pickettii 12J] gi|240867747|gb|ACS65407.1| response regulator receiver protein [Ralstonia pickettii 12D] Length = 137 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR---EEPFSLLLTDIVM 56 M++K IL+ +D +RR + L + G+ V +G++A + VR + L++TD VM Sbjct: 1 MSEKHILVVDDSTSIRRMIAACLRECGFAVTEAGDGSAALEAVRTSAQGSHHLVITDQVM 60 Query: 57 PEMDGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 P MDG+ L R RA D ++ +T A ++ + A L KPF L + V Sbjct: 61 PSMDGLTLIRALRALPAYADTPILMLTTEADNSIRDQARAAGATGFLPKPFDPDGLTDSV 120 Query: 115 NRLL 118 +LL Sbjct: 121 MQLL 124 >gi|116695984|ref|YP_841560.1| chemotaxis specific sensory transducer kinase [Ralstonia eutropha H16] gi|113530483|emb|CAJ96830.1| chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid) [Ralstonia eutropha H16] Length = 751 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R EPF L++TDI MP MDGI Sbjct: 628 RRVLVVDDSLTVRELQRKLLAGRGYDVAVAVDGMDGWNVLRAEPFDLVITDIDMPRMDGI 687 Query: 63 ELARR 67 EL RR Sbjct: 688 ELVRR 692 >gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 220 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 57/110 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + +FL + L + GY++ + N+G+ ++ + F L+L D ++P+++G++L Sbjct: 3 ILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGLDL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + D ++F+T V + + KPF +LV V Sbjct: 63 CKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERV 112 >gi|15804595|ref|NP_290636.1| transcriptional regulatory protein ZraR [Escherichia coli O157:H7 EDL933] gi|15834181|ref|NP_312954.1| transcriptional regulatory protein ZraR [Escherichia coli O157:H7 str. Sakai] gi|168752030|ref|ZP_02777052.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4113] gi|168758599|ref|ZP_02783606.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4401] gi|168764585|ref|ZP_02789592.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4501] gi|168771477|ref|ZP_02796484.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4486] gi|168777382|ref|ZP_02802389.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4196] gi|168780390|ref|ZP_02805397.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4076] gi|168790365|ref|ZP_02815372.1| response regulator ZraR [Escherichia coli O157:H7 str. EC869] gi|168798361|ref|ZP_02823368.1| response regulator ZraR [Escherichia coli O157:H7 str. EC508] gi|195939630|ref|ZP_03085012.1| transcriptional regulatory protein ZraR [Escherichia coli O157:H7 str. EC4024] gi|208805812|ref|ZP_03248149.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4206] gi|208812972|ref|ZP_03254301.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4045] gi|208821649|ref|ZP_03261969.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4042] gi|209396243|ref|YP_002273521.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4115] gi|217326117|ref|ZP_03442201.1| response regulator ZraR [Escherichia coli O157:H7 str. TW14588] gi|254796002|ref|YP_003080839.1| transcriptional regulatory protein ZraR [Escherichia coli O157:H7 str. TW14359] gi|261227284|ref|ZP_05941565.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator, sigma54 [Escherichia coli O157:H7 str. FRIK2000] gi|261257031|ref|ZP_05949564.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator, sigma54 [Escherichia coli O157:H7 str. FRIK966] gi|20140981|sp|Q8X613|ZRAR_ECO57 RecName: Full=Transcriptional regulatory protein zraR gi|12518936|gb|AAG59201.1|AE005632_2 response regulator of hydrogenase 3 activity (sensor HydH) [Escherichia coli O157:H7 str. EDL933] gi|13364403|dbj|BAB38350.1| response regulator HydG [Escherichia coli O157:H7 str. Sakai] gi|187767371|gb|EDU31215.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4196] gi|188014032|gb|EDU52154.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4113] gi|189001862|gb|EDU70848.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4076] gi|189354602|gb|EDU73021.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4401] gi|189359769|gb|EDU78188.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4486] gi|189365464|gb|EDU83880.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4501] gi|189370154|gb|EDU88570.1| response regulator ZraR [Escherichia coli O157:H7 str. EC869] gi|189379122|gb|EDU97538.1| response regulator ZraR [Escherichia coli O157:H7 str. EC508] gi|208725613|gb|EDZ75214.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4206] gi|208734249|gb|EDZ82936.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4045] gi|208741772|gb|EDZ89454.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4042] gi|209157643|gb|ACI35076.1| response regulator ZraR [Escherichia coli O157:H7 str. EC4115] gi|209751640|gb|ACI74127.1| response regulator HydG [Escherichia coli] gi|209751642|gb|ACI74128.1| response regulator HydG [Escherichia coli] gi|209751646|gb|ACI74130.1| response regulator HydG [Escherichia coli] gi|217322338|gb|EEC30762.1| response regulator ZraR [Escherichia coli O157:H7 str. TW14588] gi|254595402|gb|ACT74763.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator, sigma54 interaction protein [Escherichia coli O157:H7 str. TW14359] gi|326347144|gb|EGD70874.1| Response regulator of zinc sigma-54-dependent two-component system [Escherichia coli O157:H7 str. 1125] gi|326347605|gb|EGD71327.1| Response regulator of zinc sigma-54-dependent two-component system [Escherichia coli O157:H7 str. 1044] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 215 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 2/83 (2%) Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +ILL +D + + L LG + E+V NNGA A +KV++ ++L D++MP MDG Sbjct: 4 RILLVDDHPMVLKGLSLFLGTREEMEIVGEANNGAEALEKVKQLRPDVVLMDLMMPVMDG 63 Query: 62 IELARRATELDPDLKVMFITGFA 84 +E RR E+ PD+KV+ +T F+ Sbjct: 64 VEATRRIKEIHPDVKVVVLTSFS 86 >gi|229184109|ref|ZP_04311320.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1] gi|228599398|gb|EEK57007.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1] Length = 242 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L + G++V+S +NG A + L + DI+MP MD IEL Sbjct: 16 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDEIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 76 CRRIRE-KHSLPIMFLSA 92 >gi|218132096|ref|ZP_03460900.1| hypothetical protein BACEGG_03723 [Bacteroides eggerthii DSM 20697] gi|217985746|gb|EEC52087.1| hypothetical protein BACEGG_03723 [Bacteroides eggerthii DSM 20697] Length = 1296 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD + +L LG Y + +C+NG A + F L+++DIVMP MDG E Sbjct: 1049 RILLVDDDRALCEYLQDKLGDI-YRITTCHNGQEALQVAMSQTFDLVISDIVMPIMDGFE 1107 Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R + P L V+ +T + K LSKPF++ +L+ Sbjct: 1108 LLHR-IKRTPQIGYLPVILLTSQTELENRIKGYKEKADAFLSKPFNIDELM 1157 >gi|297519348|ref|ZP_06937734.1| transcriptional regulatory protein ZraR [Escherichia coli OP50] Length = 239 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|220904043|ref|YP_002479355.1| Fis family two component sigma-54 specific transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868342|gb|ACL48677.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 453 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 52/102 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD + R L L + GY V+ +NG A +E PF L+L D+ M M GIE Sbjct: 8 KLLVVDDDRNHREMLRALLEEWGYAPVTVDNGEEAVALCQESPFDLILMDVRMGGMSGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 R +P + V+ +T ++ VA ++ L+KP Sbjct: 68 ATRAIKGYNPAIPVLIMTAYSDVANAVEALKAGAYDYLTKPL 109 >gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1821 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ L L G+ VV NG A + ++ ++L DI MPEMDG+E Sbjct: 1704 ILLAEDNEANIITLTDYLHSKGFRVVLARNGIEAVQQAKQHTPDVILMDIQMPEMDGLES 1763 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA P + ++ +T A A + ++KP L+ LV + + L Sbjct: 1764 TRQIRADSGLPRMPIIAVTALAMPGDREKCLAAGATEYMAKPIRLKKLVTLIEQYL 1819 >gi|120612630|ref|YP_972308.1| response regulator receiver protein [Acidovorax citrulli AAC00-1] gi|120591094|gb|ABM34534.1| response regulator receiver protein [Acidovorax citrulli AAC00-1] Length = 153 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL ED+ ++R + L EV SC A +PF +++TD+ +P M G + Sbjct: 33 RILYVEDNAELRETIGMLLEGDDREVTSCATAEEALKLDGPQPFDIVVTDVSLPGMSGTD 92 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R+ ++DP ++ +G+ D+ P N + L KPF L DL Sbjct: 93 LCRKLLQVDPQRWIVLCSGY-QFGHGLDTLGP-NVRALLKPFELEDL 137 >gi|83951870|ref|ZP_00960602.1| sensory box sensor histidine kianse/response regulator [Roseovarius nubinhibens ISM] gi|83836876|gb|EAP76173.1| sensory box sensor histidine kianse/response regulator [Roseovarius nubinhibens ISM] Length = 754 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ +R F +A+ G VV + A + + +E + +TD+VMP MDG Sbjct: 625 VLLVEDEAPVRAFASRAMQLRGLTVVEAESAEEALELLADEDLAVDVFVTDVVMPGMDGP 684 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R+A E PD++ +F++G+A + +A + LSKPF L +L V + Sbjct: 685 SWVRKALEQRPDVRTIFMSGYAQEDFSDARSAIPRSTFLSKPFSLTELTEAVQQ 738 >gi|332523095|ref|ZP_08399347.1| response regulator SaeR [Streptococcus porcinus str. Jelinkova 176] gi|332314359|gb|EGJ27344.1| response regulator SaeR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ + + L +AG+ V ++G+ A +K R+ + L+++DI+MP MD Sbjct: 1 MTYKILLVDDEVSITDINKRYLQQAGHLVTVASDGSQALEKFRQNQYDLIISDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + P+ +FIT +++L D +SKPF R+LV Sbjct: 61 GYDFIGEVLLEKPNQPFLFITAKISEPDKIYSLSLGADD-------FISKPFSPRELVLR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKNIL 118 >gi|330901692|gb|EGH33111.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. japonica str. M301072PT] Length = 297 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALRR 130 >gi|312879296|ref|ZP_07739096.1| response regulator receiver modulated CheW protein [Aminomonas paucivorans DSM 12260] gi|310782587|gb|EFQ22985.1| response regulator receiver modulated CheW protein [Aminomonas paucivorans DSM 12260] Length = 301 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 KIL+AED +RR + AL + G+ + +G +A+D++ E+ F LL+TDI MP+MD Sbjct: 179 KILVAEDSPLIRRLIQDALAEGGFHNLELVGHGKAAWDRLNDEEDTFHLLITDIEMPKMD 238 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R+ E L + + + A + + + +SKP + LV V RLL Sbjct: 239 GLALTRKVKESSLLKHIPTIVFSSIVAEDIKRKAQSVGADAQISKP-EISLLVETVTRLL 297 >gi|298506437|gb|ADI85160.1| sensor histidine kinase response regulator, PAS, GAF and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 1004 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ +LL ED+ + + L + GY V+ A E LL+TD++MPEM Sbjct: 885 NETVLLVEDEPAILAMTTEILTQLGYAVLQAPTPTEALRIGCEHKGEIHLLMTDVIMPEM 944 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G ELA+ ++ P ++ ++++G+ + ++P + L KPF L ++ +L Sbjct: 945 NGRELAKSLSQFYPRIRCLYMSGYTSDIISPHGVLNDSVHFLQKPFDFTTLSLKLREVL 1003 >gi|283851785|ref|ZP_06369063.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572905|gb|EFC20887.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 310 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 39/67 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ R FL + L G+ + +G A + +R E F ++L DI MP MDGIE Sbjct: 189 KILLAEDNPINRLFLQELLRNEGHSITYAADGQEALEALRTEAFDIVLMDISMPRMDGIE 248 Query: 64 LARRATE 70 RR E Sbjct: 249 ATRRIRE 255 >gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] Length = 232 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 11/118 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q IL+ +DD D+ + + L + GY+V+ +G A + L+L D++MP MDG Sbjct: 3 QQSILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVMMPTMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +E+ RR E ++ VMF++ +A + L+ ++ ++KPF + +LV V Sbjct: 63 VEVCRRIRE-KFNIPVMFLSAKSADIDKVIGLSTGAD-----DYITKPFSMMELVARV 114 >gi|225571433|ref|ZP_03780429.1| hypothetical protein CLOHYLEM_07531 [Clostridium hylemonae DSM 15053] gi|225159909|gb|EEG72528.1| hypothetical protein CLOHYLEM_07531 [Clostridium hylemonae DSM 15053] Length = 562 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ +D+ + + L K + K+G + + S NNG A++ + +E +++TDI MP D Sbjct: 34 KILVVDDEFRVCKMLEKFINKSGLDLQVIASVNNGKDAFEIISKESPDIVVTDIRMPIFD 93 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL +R + +FI+G+ + + L KP + +D +N + +++ Sbjct: 94 GIELVKRVRAAGNNCDFIFISGYREFEYAHSAISYGVRHYLLKPINKQDFLNSLTKII 151 >gi|15615007|ref|NP_243310.1| two-component response regulator involved in modulation of flagellar [Bacillus halodurans C-125] gi|10175064|dbj|BAB06163.1| two-component response regulator involved in modulation of flagellar [Bacillus halodurans C-125] Length = 121 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K GY+VV ++G A +K +E L+ DI MPE Sbjct: 1 MAARILIVDDASFMRMMIKDILTKNGYDVVGEAHDGEQAVEKYKELSPDLVTMDITMPEK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + +DP+ KV+ + A+ D+ + KPF +++ + + L Sbjct: 61 DGIAALKDIRAIDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIDAIQKTL 119 >gi|320449815|ref|YP_004201911.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] gi|320149984|gb|ADW21362.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] Length = 119 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +IL+ +D++ + FL+K KAG+EVV G A + + F L++ D+++P MD Sbjct: 2 RILVVDDEESILVPLEFLLK---KAGHEVVLARTGEEALEALSRGAFDLMVLDLMLPGMD 58 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G + RA L KV+ +T A + A ++KPF ++DL+++V L Sbjct: 59 GFAVLERAKALSQRPKVLVLTARGREADRAKALALGAEAFMAKPFGIQDLLSQVEEL 115 >gi|313207349|ref|YP_004046526.1| two component, sigma54 specific, transcriptional regulator, fis family [Riemerella anatipestifer DSM 15868] gi|312446665|gb|ADQ83020.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Riemerella anatipestifer DSM 15868] Length = 394 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 QKIL+ ED+ + L L + YE++ ++G AY + ++ FSL+++DI MP++ Sbjct: 2 QKILIVEDEKAISGLLKNILSEEIKDYEILVADDGLEAYKLIEKDDFSLVISDIKMPKVS 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL ++A E+ PD + I+ + + KP L L+ V L Sbjct: 62 GTELLQKALEIKPDTAFVMISAHGDINTAVQCLKQGAYDFIEKPIDLNRLITSVRNTLER 121 Query: 121 K 121 K Sbjct: 122 K 122 >gi|258513413|ref|YP_003189635.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum acetoxidans DSM 771] gi|257777118|gb|ACV61012.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum acetoxidans DSM 771] Length = 486 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD D R +L + L K G+ +V +G A K F+L+++DI MP++ G+EL Sbjct: 3 ILLVEDDLDSRLYLGQFLRKLGHRIVESEDGEDALSKFPTGQFNLVISDIRMPKISGLEL 62 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + L D ++ TG V+L ++ L KP ++ +L + R+ Sbjct: 63 LQTIVHLPAGRDTDIILFTGHVDVSLAIEALRAGAYDYLLKPINVNELTAVIQRV 117 >gi|163758656|ref|ZP_02165743.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Hoeflea phototrophica DFL-43] gi|162283946|gb|EDQ34230.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Hoeflea phototrophica DFL-43] Length = 444 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+Q ++ +D++ +R + A + + G A +++ + +L+TDI MP MD Sbjct: 1 MSQTVVFVDDEEHLRIAAGQTFELAEIDCLCLAEGEDALNRMSRDFDGVLITDIRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L RR E+DPD+ V+ +TG V L L KP LV R + Sbjct: 61 GVTLLRRVLEIDPDIPVILVTGHGDVDLAVSCMKDGAYDFLEKPCEPARLVTSARRAMEW 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|153937923|ref|YP_001390256.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152933819|gb|ABS39317.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318352|gb|ADF98729.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 223 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD +R+ L K GY+ + +G SA D + E L+++DI+MP MDG Sbjct: 3 RVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E + ++ ++ IT + + + KP + +++ V LL Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALL 117 >gi|153873057|ref|ZP_02001767.1| chemotaxis protein CheY [Beggiatoa sp. PS] gi|152070476|gb|EDN68232.1| chemotaxis protein CheY [Beggiatoa sp. PS] Length = 142 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D MRR L L +A Y+V NG +A + + + F L+LTD+ MP++D Sbjct: 22 MMDKILICDDSVSMRRMLKLTLNQANYQVTEAENGLNALELAKNDQFDLILTDVNMPKLD 81 Query: 61 GIELAR 66 G+ L R Sbjct: 82 GLSLVR 87 >gi|323182104|gb|EFZ67514.1| transcriptional regulatory protein zraR [Escherichia coli 1357] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|315023244|gb|EFT36254.1| Sigma-54 dependent transcriptional regulator/response regulator [Riemerella anatipestifer RA-YM] gi|325335192|gb|ADZ11466.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Riemerella anatipestifer RA-GD] Length = 394 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 QKIL+ ED+ + L L + YE++ ++G AY + ++ FSL+++DI MP++ Sbjct: 2 QKILIVEDEKAISGLLKNILSEEIKDYEILVADDGLEAYKLIEKDDFSLVISDIKMPKVS 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL ++A E+ PD + I+ + + KP L L+ V L Sbjct: 62 GTELLQKALEIKPDTAFVMISAHGDINTAVQCLKQGAYDFIEKPIDLNRLITSVRNTLER 121 Query: 121 K 121 K Sbjct: 122 K 122 >gi|299137227|ref|ZP_07030409.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX8] gi|298600632|gb|EFI56788.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX8] Length = 167 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L L K G+ ++ +G +A + + E LL++D+VMP M GIEL Sbjct: 31 VLIVDDERVIADTLSIILKKNGFATLTVYDGKAALELAKAELPDLLISDVVMPGMSGIEL 90 Query: 65 ARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A T+ P+ K++ +G AA L N L+KP H +D++ ++ L Sbjct: 91 AISLTQNVPECKILLFSGQAATVDLLAKAREMGHNFTTLAKPVHPKDMLRRISECL 146 >gi|262171514|ref|ZP_06039192.1| signal transduction histidine kinase [Vibrio mimicus MB-451] gi|261892590|gb|EEY38576.1| signal transduction histidine kinase [Vibrio mimicus MB-451] Length = 573 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 N IL+ ED + + L K GY+V NG A + + + F L+L DI MP MD Sbjct: 451 NHHILVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEKSNAFDLVLMDISMPIMD 510 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI R+ D D+ ++ +T A + + ++ KP +D++N VNR L Sbjct: 511 GIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRGKDIMNVVNRFL 568 >gi|138894859|ref|YP_001125312.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|134266372|gb|ABO66567.1| Response regulator [Geobacillus thermodenitrificans NG80-2] Length = 118 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D + MR L + L KA + V NG A + R L++ DI MP M+GIE Sbjct: 4 ILVVDDANFMRVTLARILQKANHTVAGEAKNGKEAVELYRRLHPELVIMDITMPVMNGIE 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E+DP K++ + + ++ A + KPF D++ V RLL Sbjct: 64 AVRAIKEIDPGAKIIICSALGQQRMIVEAIEAGAADFIVKPFEESDVLEAVARLL 118 >gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 226 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R + L +AG+ V +G +A +K L++ DI MPEMDG+E+ Sbjct: 2 ILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAESLRPDLIILDIGMPEMDGLEV 61 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RA D+ ++F+T A V L ++ +SKPF R+LV V +L Sbjct: 62 C-RALRKTSDVPILFLTARADEIDRVVGLELGAD-----DYVSKPFSPRELVARVRAILK 115 Query: 120 IKN 122 N Sbjct: 116 RSN 118 >gi|188492788|ref|ZP_03000058.1| response regulator ZraR [Escherichia coli 53638] gi|188487987|gb|EDU63090.1| response regulator ZraR [Escherichia coli 53638] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|330000229|ref|ZP_08303657.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] gi|328538052|gb|EGF64222.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] Length = 415 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ILL +DD D+ + L +AGY V +CNN A ++V ++ ++L+D+ MP G Sbjct: 4 NCSILLIDDDADVLDAYTQLLEQAGYHVSACNNPFDAREQVPKDWPGIVLSDVCMPGCSG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I+L + D L ++FITG V + ++ L KP L+ V+ L Sbjct: 64 IDLMTLFHQDDDLLPILFITGHGDVPMAVEAVKKGAWDFLQKPIDPGKLLTLVDAAL 120 >gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+ +PEMD Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLKLPEMD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVTRR 67 >gi|262165686|ref|ZP_06033423.1| signal transduction histidine kinase [Vibrio mimicus VM223] gi|262025402|gb|EEY44070.1| signal transduction histidine kinase [Vibrio mimicus VM223] Length = 573 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 N IL+ ED + + L K GY+V NG A + + + F L+L DI MP MD Sbjct: 451 NHHILVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEKSNAFDLVLMDISMPIMD 510 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI R+ D D+ ++ +T A + + ++ KP +D++N VNR L Sbjct: 511 GIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRGKDIMNVVNRFL 568 >gi|258623303|ref|ZP_05718309.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573] gi|258584435|gb|EEW09178.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573] Length = 573 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 N IL+ ED + + L K GY+V NG A + + + F L+L DI MP MD Sbjct: 451 NHHILVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEKSNAFDLVLMDISMPIMD 510 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI R+ D D+ ++ +T A + + ++ KP +D++N VNR L Sbjct: 511 GIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRGKDIMNVVNRFL 568 >gi|242277764|ref|YP_002989893.1| Fis family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242120658|gb|ACS78354.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio salexigens DSM 2638] Length = 447 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 59/104 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D++ + + L K L V + N +A + VR+E + ++++DI +P+ DG+E Sbjct: 6 KVLVVDDEESILKLLSKELSSPERIVQTANCAKTAREMVRKERYEVIISDIRLPDGDGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 L +++PD++V+ ITG + ++ ++KPF L Sbjct: 66 LLTEFKDMEPDVEVILITGHGNIDNAVEAIRIGAYDYITKPFRL 109 >gi|218129748|ref|ZP_03458552.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697] gi|217987858|gb|EEC54183.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697] Length = 1362 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+D+++ +L L Y+V +C+NG AYD + + L ++D++MPEMDG+ Sbjct: 1111 RVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDTPDLAISDVMMPEMDGLT 1169 Query: 64 LARR 67 L R+ Sbjct: 1170 LCRK 1173 >gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1178 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + +LL EDD ++R + L + GY V+ A P LL+TD+VMP M Sbjct: 1059 ETVLLVEDDTEVRALAREVLRERGYTVLEAPGAGEALQTAAAHRGPLPLLITDVVMPGMG 1118 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA P L+V++++G+ A+ L KPF L +V +L Sbjct: 1119 GRQLAEALQWSRPGLRVLYVSGYTDDAVVRHGVRSAEVAFLQKPFTAEALARKVRAVL 1176 >gi|220915652|ref|YP_002490956.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953506|gb|ACL63890.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 443 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 61/115 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D+ + RF+ + L G+EVV G A ++ E F +++TD+ MP++DG+ Sbjct: 2 SRVLVVDDEPKLGRFVQEMLELDGHEVVRAGGGVEALARLGEGAFDVVVTDLRMPQVDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R A P +V+ +T + ++ A ++KPF + +L V RL Sbjct: 62 AVLRAARARTPPPEVVMMTAHGSAESAVEAMKAGAADYVTKPFPMDELRLRVRRL 116 >gi|197120954|ref|YP_002132905.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196170803|gb|ACG71776.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 446 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 61/115 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D+ + RF+ + L G+EVV G A ++ E F +++TD+ MP++DG+ Sbjct: 2 SRVLVVDDEPKLGRFVQEMLELDGHEVVRAGGGVEALARLGEGAFDVVVTDLRMPQVDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R A P +V+ +T + ++ A ++KPF + +L V RL Sbjct: 62 AVLRAARARTPPPEVVMMTAHGSAESAVEAMKAGAADYVTKPFPMDELRLRVRRL 116 >gi|75907998|ref|YP_322294.1| metal dependent phosphohydrolase, HD region with response regulator receiver modulation [Anabaena variabilis ATCC 29413] gi|75701723|gb|ABA21399.1| Metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation [Anabaena variabilis ATCC 29413] Length = 414 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 12/125 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D R LG GY V+ ++GA+A V ++ L+L D++MPEMDG E Sbjct: 95 KILVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQQPDLILLDVMMPEMDGFE 154 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 + + + E + V+FIT ALN + + +V LSKPF +LV V Sbjct: 155 VCQLLKQDEHTRLIPVIFIT-----ALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKS 209 Query: 117 LLTIK 121 L+ K Sbjct: 210 LVQQK 214 >gi|66048162|ref|YP_238003.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae B728a] gi|63258869|gb|AAY39965.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae B728a] gi|330970566|gb|EGH70632.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aceris str. M302273PT] Length = 463 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|170021993|ref|YP_001726947.1| transcriptional regulatory protein ZraR [Escherichia coli ATCC 8739] gi|194439783|ref|ZP_03071850.1| response regulator ZraR [Escherichia coli 101-1] gi|253775366|ref|YP_003038197.1| transcriptional regulatory protein ZraR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163946|ref|YP_003047054.1| transcriptional regulatory protein ZraR [Escherichia coli B str. REL606] gi|300928824|ref|ZP_07144332.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|169756921|gb|ACA79620.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli ATCC 8739] gi|194421280|gb|EDX37300.1| response regulator ZraR [Escherichia coli 101-1] gi|242379535|emb|CAQ34351.1| ZraR transcriptional activator [Escherichia coli BL21(DE3)] gi|253326410|gb|ACT31012.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975847|gb|ACT41518.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [Escherichia coli B str. REL606] gi|253980003|gb|ACT45673.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [Escherichia coli BL21(DE3)] gi|300463205|gb|EFK26698.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|309704420|emb|CBJ03769.1| two-component system response regulator [Escherichia coli ETEC H10407] gi|323958931|gb|EGB54606.1| sigma-54 interaction domain-containing protein [Escherichia coli H489] gi|323969078|gb|EGB64386.1| sigma-54 interaction domain-containing protein [Escherichia coli TA007] gi|332345995|gb|AEE59329.1| transcriptional regulatory protein ZraR [Escherichia coli UMNK88] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|332971441|gb|EGK10395.1| sporulation initiation phosphotransferase F [Desmospora sp. 8437] Length = 124 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++K+L+ +D +R L + + + NG A + +R+E L+L D+ MP MDG Sbjct: 4 DKKVLVVDDQYGIRILLTEVFSRERINIFQAANGKLALEIIRKEKPDLILLDMKMPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +EL R+ + D V+ +T + + + ++ +KPF + +L EV R LT Sbjct: 64 LELLRQLKKEQTDAIVIMMTAYGELDMVEEATKLGARAHFTKPFDVMELRTEVIRQLT 121 >gi|255020609|ref|ZP_05292672.1| Putative sensory histidine kinase YfhA [Acidithiobacillus caldus ATCC 51756] gi|254969994|gb|EET27493.1| Putative sensory histidine kinase YfhA [Acidithiobacillus caldus ATCC 51756] Length = 466 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD D R L L G++V + + A + E L++TD+ MPEMDG+E+ Sbjct: 13 ICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVITDLRMPEMDGMEV 72 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 ELDP+L V+ +T ++ P++ A A+ L KPF +L Sbjct: 73 LEAVQELDPELPVILLTAHGSI---PNAVAAMRAQAFGYLGKPFSSEEL 118 >gi|227874143|ref|ZP_03992349.1| response regulator receiver protein [Oribacterium sinus F0268] gi|227840055|gb|EEJ50479.1| response regulator receiver protein [Oribacterium sinus F0268] Length = 541 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +LL +D++D+ +++ + + GY + NG A + E+P ++LTDI MP MDG Sbjct: 6 VLLVDDEEDVVEAIVQKIDWDRLGYSLAGYAKNGLEALEIAEEKPIDVVLTDIKMPYMDG 65 Query: 62 IELARRATELDPDLKVMFITGF 83 + L+ R EL P +K++ +GF Sbjct: 66 LTLSHRLKELYPSIKIIIFSGF 87 >gi|261340650|ref|ZP_05968508.1| DNA-binding response regulator TctD [Enterobacter cancerogenus ATCC 35316] gi|288317064|gb|EFC56002.1| DNA-binding response regulator TctD [Enterobacter cancerogenus ATCC 35316] Length = 224 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V N+G +A ++ E +++ + DI MP DG+E Sbjct: 2 RLLLAEDNRELAHWLKKALVQNGFAVDCVNDGRAADHLLQGENYAVAILDIGMPGFDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + L V+F+T + VA L KPF L +L + LL Sbjct: 62 VVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALL 116 >gi|225389850|ref|ZP_03759574.1| hypothetical protein CLOSTASPAR_03599 [Clostridium asparagiforme DSM 15981] gi|225044097|gb|EEG54343.1| hypothetical protein CLOSTASPAR_03599 [Clostridium asparagiforme DSM 15981] Length = 229 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+DD ++ ++L GY C NG AY + +PF L+L DI M +DG Sbjct: 5 RILIADDDQEILTITSRSLQSQGYLTFECRNGIDAYQAIVSQPFDLILLDINMEGLDGFR 64 Query: 64 LARRATELDPDLKVMFITGFA 84 + ++ E ++ ITG A Sbjct: 65 IIQKVREQQIFTPILIITGNA 85 >gi|163814357|ref|ZP_02205746.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759] gi|158449992|gb|EDP26987.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759] Length = 223 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG E Sbjct: 3 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGALALEILDKEYIDLIISDIMMPVMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+ IT + + + KP ++ ++V V LL Sbjct: 63 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALL 117 >gi|188582501|ref|YP_001925946.1| Fis family transcriptional regulator [Methylobacterium populi BJ001] gi|179345999|gb|ACB81411.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacterium populi BJ001] Length = 450 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 61/117 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++I+ +D++D+RR ++L G+ V + A +R EP +++TD+ +P +DG Sbjct: 9 SERIVFIDDEEDVRRANRQSLELDGFTVETFEAAEPALAAIRAEPPGVVVTDVRLPGLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R DP+L V+ ITG +++ + L+KP+ L+ V R L Sbjct: 69 RALFERIRAEDPNLPVILITGHGDISMAVAAMRAGAYDFLAKPYPAEALMGSVRRAL 125 >gi|126732142|ref|ZP_01747944.1| sensor histidine kinase with a PAC motif and a response regulator receiver domain [Sagittula stellata E-37] gi|126707431|gb|EBA06495.1| sensor histidine kinase with a PAC motif and a response regulator receiver domain [Sagittula stellata E-37] Length = 1027 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 7/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEP--FSLLLTDIVMP-EMD 60 +L+ ED+ D+ FL L K+ GY V++ G +A D V +P F +LLTD+VMP + Sbjct: 904 VLIVEDESDL-LFLTSELVKSLGYRVLTAATGRAALDLVDADPDCFDILLTDVVMPGGIG 962 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L RR ++ PD+ +++++G+ + N +A ++ KP +L + R L Sbjct: 963 GFDLVRRIRDVRPDVAIVYMSGYTGITRENMGNV--SAPLVRKPCRPAELSRVLRRAL 1018 >gi|159898887|ref|YP_001545134.1| two component, sigma54 specific, Fis family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891926|gb|ABX05006.1| two component, sigma54 specific, transcriptional regulator, Fis family [Herpetosiphon aurantiacus ATCC 23779] Length = 385 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L+ +D+ ++R L +AL GY+VV N + +P +++ D+ + MD Sbjct: 1 MTKRLLVIDDEANLRWVLSEALSDQGYDVVVAANANDGLAAMSRQPADVVILDLKLKGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ R E P++ V+ +T + VA ++ A L KPF L ++ ++ R L Sbjct: 61 GLATLARLRERWPEVVVLILTAYGTVASAVEAMQLGAADYLRKPFDLEEIGFKLQRAL 118 >gi|91223542|ref|ZP_01258807.1| FlaM [Vibrio alginolyticus 12G01] gi|91191628|gb|EAS77892.1| FlaM [Vibrio alginolyticus 12G01] Length = 469 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALLKLKSNTVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L + + P+L V+ +T +A + + ++KPF L+N V+R IK Sbjct: 63 LALLKSIKQNWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPIK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|94313142|ref|YP_586351.1| response regulator receiver domain-containing protein [Cupriavidus metallidurans CH34] gi|93356994|gb|ABF11082.1| response regulator, signal receiver domain protein (CheY-like) [Cupriavidus metallidurans CH34] Length = 150 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++++AED L L G G EVV C NGA A + P +LLLTD+ +P ++G+ Sbjct: 16 RVIVAEDHPVCLLVLEDQLKGIGGCEVVLCENGADALRALESGPAALLLTDLSLPGIEGL 75 Query: 63 ELARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 LARR A ++ PDL ++ IT A VL+KP L + + R Sbjct: 76 ALARRIRTGKAGQVAPDLPIVAITATAGPEERLACLEAGIGMVLTKPVSYETLQSVLGRY 135 Query: 118 L 118 L Sbjct: 136 L 136 >gi|332992672|gb|AEF02727.1| putative two-component sensor histidine kinase and response regulator hybrid [Alteromonas sp. SN2] Length = 661 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 8/116 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD+D L L G++V++ N GA A + + E F +L D+ +P+ G Sbjct: 551 KKILVIEDDEDAAELLQLFLVHQGHDVITANTGADAIECMTEVVFDHVLMDLTLPDYHGY 610 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVN 115 +LA ++ P K++ ++G PD + K+ ++ L KP DL++ V+ Sbjct: 611 DLAAELNQIQPKAKLVIVSGN-----EPDKDTMKHLGVSQSLLKPVSKEDLISVVS 661 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 K+L+ +D ++RR + + V NG A + V + EPF L+L DI MP Sbjct: 404 KVLIVDDIREIRRLTGHLVSQCHATVAYAENGVKALEAVLQAEEDNEPFHLVLMDIHMPV 463 Query: 59 MDGIE 63 M+GIE Sbjct: 464 MNGIE 468 >gi|330980587|gb|EGH78690.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 461 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|308274444|emb|CBX31043.1| Acetoacetate metabolism regulatory protein atoC [uncultured Desulfobacterium sp.] Length = 464 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ MR L L + G+EV + +G A DK++E F +L DI M + G+E Sbjct: 21 RLLIVDDELIMRESLAGWLLRDGHEVETAASGEEALDKIKETRFDILFVDIKMEGISGLE 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + DPD+ ++ IT + ++ ++ L KPF +L + ++L Sbjct: 81 VLETVKGSDPDVAIVMITAYGSIQTAIEAIKKGAYDYLLKPFDPHELGVLIEKIL 135 >gi|256840702|ref|ZP_05546210.1| LOW QUALITY PROTEIN: two-component system sensor kinase/response regulator [Parabacteroides sp. D13] gi|256737974|gb|EEU51300.1| LOW QUALITY PROTEIN: two-component system sensor kinase/response regulator [Parabacteroides sp. D13] Length = 536 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R +L L + V+ NGA A D + +E SL+++D++MPEM+G EL Sbjct: 285 ILIVEDDWDIRAYLQHELS-GNFNVLVAENGAKALDILLKENVSLVVSDVMMPEMNGFEL 343 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLR-------DLVN 112 RR + D+ + I AL+ DS + + KPF++ L+ Sbjct: 344 CRR---VKSDMALSHIPVILLTALSDDSQRLYGFEGGADEYIQKPFNIEIVKLRIIKLLE 400 Query: 113 EVNRL 117 E NRL Sbjct: 401 ERNRL 405 >gi|242280041|ref|YP_002992170.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242122935|gb|ACS80631.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 886 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL EDD+D + L GY V + + A++ + +EP F L++TD MP + Sbjct: 758 ENILFVEDDEDQLETTPRILESLGYMVTALASPEKAFNLIVDEPGRFDLMITDYDMPHTN 817 Query: 61 GIELARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ELAR ++ PDL ++ ++G + + + + KVL KP++ + + + + Sbjct: 818 GLELARLVQDVAPDLPILVVSGRRNVLSYVADVEYDVKSVKKVLMKPYNKTIIADAIREV 877 Query: 118 LT 119 L+ Sbjct: 878 LS 879 >gi|218130279|ref|ZP_03459083.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697] gi|217987563|gb|EEC53891.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697] Length = 1359 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D++R +L + L + Y V C+NG SA ++E L+++DI+MPEM G E Sbjct: 1096 KILVVEDNDELREYLRRTLAE-NYHVQVCSNGKSALYIIKEYFPDLIISDIMMPEMRGDE 1154 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + D+ I ALN D N + + KPF++ L + LL Sbjct: 1155 LCQVVKN---DIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLL 1211 >gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] Length = 233 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 16/124 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 ++IL+ ED+D +R F++ L +AGY+VV N+G +A K E F + + DI+MP +D Sbjct: 2 KRILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGID 61 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+ + + + +L ++ +T + L D ++KPF +LV Sbjct: 62 GLTVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADD-------YVTKPFSPSELVAR 114 Query: 114 VNRL 117 V+ L Sbjct: 115 VDSL 118 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] gi|151280612|gb|ABR89022.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D +R K L GY+VV +G ++ VR E F L++TDI MP MDGI Sbjct: 635 KKVLVVDDSLTVRELERKLLSNCGYQVVVAVDGMDGWNAVRTEHFDLVITDIDMPRMDGI 694 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL R+A L L VM ++ Sbjct: 695 ELVSLIRQAANLQS-LPVMIVS 715 >gi|77919739|ref|YP_357554.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545822|gb|ABA89384.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter carbinolicus DSM 2380] Length = 492 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 53/104 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ +D++ MR FL L + GY V + ++G A ++E+ + L+++DI MP +DG Sbjct: 27 QHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDG 86 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L E ++ IT F+ D+ ++KPF Sbjct: 87 FGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPF 130 >gi|260870715|ref|YP_003237117.1| fused DNA-binding response regulator ZraR in two-component regulatory system with ZraS: response regulator/sigma 54 interaction protein [Escherichia coli O111:H- str. 11128] gi|257767071|dbj|BAI38566.1| fused DNA-binding response regulator ZraR in two-component regulatory system with ZraS: response regulator/sigma 54 interaction protein [Escherichia coli O111:H- str. 11128] gi|323177560|gb|EFZ63145.1| transcriptional regulatory protein zraR [Escherichia coli 1180] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|163749283|ref|ZP_02156532.1| response regulator receiver domain protein (CheY-like) [Shewanella benthica KT99] gi|161331002|gb|EDQ01928.1| response regulator receiver domain protein (CheY-like) [Shewanella benthica KT99] Length = 210 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AEDD D+R ++ L ++V++ A ++ F + L D+VM M G+E Sbjct: 3 KVLIAEDDKDLRLNMVDILELEDFDVIAVPCAEEAIAVCQKHSFDIALMDLVMSGMTGVE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +P + V+ +T +A V D+ VL+KPF V+R++TI+ Sbjct: 63 AISNLRQENPFMAVVIVTAYATVDTAVDAMKKGADSVLTKPF------KSVDRVMTIR 114 >gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A + + E + LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R+ D+ V+F+T V L KPF +L+ V LL N Sbjct: 62 VLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120 >gi|317473767|ref|ZP_07933048.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316910024|gb|EFV31697.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1359 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D++R +L + L + Y V C+NG SA ++E L+++DI+MPEM G E Sbjct: 1096 KILVVEDNDELREYLRRTLAE-NYHVQVCSNGKSALYIIKEYFPDLIISDIMMPEMRGDE 1154 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + D+ I ALN D N + + KPF++ L + LL Sbjct: 1155 LCQVVKN---DIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLL 1211 >gi|255012063|ref|ZP_05284189.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis 3_1_12] gi|313149906|ref|ZP_07812099.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138673|gb|EFR56033.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 447 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ EDD L LGK G+ V S +N A A + +P L+L+D+ +P+ DGI Sbjct: 2 RSILIVEDDITFGMMLKTWLGKKGFNVSSVSNIARAQKHIDAQPTDLILSDLRLPDHDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E + + ++ +TG+A + + ++KP + +L+ ++ L +K Sbjct: 62 HLLKWMGEKELHIPLIIMTGYADIQSAVQAMKLGAQDYIAKPVNPEELLKKITEALQVK 120 >gi|217077265|ref|YP_002334983.1| putative Chemotaxis protein CheY-like protein [Thermosipho africanus TCF52B] gi|217037120|gb|ACJ75642.1| putative Chemotaxis protein CheY-like protein [Thermosipho africanus TCF52B] Length = 120 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR L + KAG+EVV NG A +K +E ++ DI MPEM Sbjct: 1 MGKRILIVDDAAFMRMMLKDIVTKAGHEVVGEAANGKEAVEKYKELKPDIVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +GI+ + ++DP+ ++ + A+ ++ + KPF ++ + ++ Sbjct: 61 NGIDAIKEIKKIDPNATIIVCSAMGQQAMVIEAIQAGAKDFIVKPFQPARVIEAIQKV 118 >gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 15/123 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 K+L+ ED++ +R F++ L + G+EV+ NG A ++ P + L D+++P +DG Sbjct: 3 KVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGIDGF 62 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ RR E + + ++F+T A+++ D + +SKPF +L+ + Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDH-------VSKPFSPTELIARLQ 115 Query: 116 RLL 118 LL Sbjct: 116 SLL 118 >gi|168334559|ref|ZP_02692715.1| response regulator receiver protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 120 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q IL+ +D MR + + K GYEV NG A K +E L+L DI MPEM Sbjct: 1 MAQTILIVDDAAFMRMMIKDIITKNGYEVAGEAENGQIAVAKYKELKPDLVLMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ + D KV+ + A+ ++ + KPF ++ V ++L Sbjct: 61 DGIQAVKAIKAADAGAKVIMCSAMGQQAMVIEAIQAGAKDFIVKPFQADRILEAVKKVL 119 >gi|120609566|ref|YP_969244.1| Fis family two component sigma-54 specific transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120588030|gb|ABM31470.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidovorax citrulli AAC00-1] Length = 471 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD DM R L L AGYE+ + + +A ++ L+L+D+ +P DG+ Sbjct: 15 RILVVDDDADMLRLLSLRLNAAGYEITAVPSAEAALAQLETSRPQLVLSDVRLPGRDGLA 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L P L V+ +T + ++ A L+KP+ +DL++++ + L + Sbjct: 75 LFDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDAKDLLDKIAQALALS 132 >gi|91783974|ref|YP_559180.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91687928|gb|ABE31128.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 782 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 5/108 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD + + L G+E ++ A + ++ F +L+ D+ MP M GIE Sbjct: 670 RILLVDDDPESTEAIGALLKMLGHEPAMTDSPGEALNWLKTRSFDILIADLAMPGMSGIE 729 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDL 110 LA++A + P+L+V+F +G PD K L KP+ L DL Sbjct: 730 LAQKAVQRRPELRVVFASGREM----PDVPGLDFVWKALRKPYALEDL 773 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD ++ ++ L GY V+ ++ A +R LL TD+VMP + Sbjct: 527 ETVLVVEDDRKVQSTVVDTLSGLGYSVLKADDAEQAMAVIRSGVHIDLLFTDVVMPGPLR 586 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A +A + P LKV+F +G+ A+ ++LSKP+ L ++ +LL Sbjct: 587 SPDMAAQALQFLPRLKVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREQLAYKIRQLL 644 >gi|85860540|ref|YP_462742.1| sigma-54-dependent transcriptional regulator [Syntrophus aciditrophicus SB] gi|85723631|gb|ABC78574.1| sigma-54-dependent transcriptional regulator [Syntrophus aciditrophicus SB] Length = 443 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPE 58 M+ +I++ +DD FL +AL +A Y+V C SA D ++ + + L+++DI MP+ Sbjct: 1 MSIRIIVIDDDAVACEFLQEALRRADYDVDICT---SARDVLKGDLSRYDLVISDIRMPD 57 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG++L RR + P L V+ +T + ++ ++ +SKPF + N V ++L Sbjct: 58 MDGLQLLRRIHQQWPALPVILMTAYGSLESTMEALQLGAWDYISKPFSPEAIRNMVKKVL 117 Query: 119 TIK 121 ++ Sbjct: 118 GMR 120 >gi|17231412|ref|NP_487960.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133054|dbj|BAB75619.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 414 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 12/125 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D R LG GY V+ ++GA+A V ++ L+L D++MPEMDG E Sbjct: 95 KVLVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQQPDLILLDVMMPEMDGFE 154 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 + + + E + V+FIT ALN + + +V LSKPF +LV V Sbjct: 155 VCQLLKQDEHTRLIPVIFIT-----ALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKS 209 Query: 117 LLTIK 121 L+ K Sbjct: 210 LVQQK 214 >gi|89075511|ref|ZP_01161922.1| putative response regulator [Photobacterium sp. SKA34] gi|89048783|gb|EAR54354.1| putative response regulator [Photobacterium sp. SKA34] Length = 459 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ ++L+ EDD+ +R L+ L AGY+ + + A ++ E ++++D+ M M Sbjct: 1 MNQTRVLVVEDDEGLREALVDTLALAGYQWIEAESAEHALVIMKSETVDIVVSDVQMAGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ L R P + V+ +T +A + + ++KPF L+N V R Sbjct: 61 DGLALLRSIKLNWPKIPVLLMTAYANIEDAVAAMREGAIDYMAKPFAPEVLLNMVGRYAP 120 Query: 120 IKN 122 IK Sbjct: 121 IKK 123 >gi|269965707|ref|ZP_06179820.1| Acetoacetate metabolism regulatory protein atoC [Vibrio alginolyticus 40B] gi|269829775|gb|EEZ84011.1| Acetoacetate metabolism regulatory protein atoC [Vibrio alginolyticus 40B] Length = 468 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALLKLKSNTVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L + + P+L V+ +T +A + + ++KPF L+N V+R IK Sbjct: 63 LALLKSIKQNWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPIK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|254883604|ref|ZP_05256314.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254836397|gb|EET16706.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1446 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED+ ++R+F+ + L Y VV +G A +K+ EE ++TDI+MP MDGIE Sbjct: 1190 KVMVVEDNAELRQFICEIL-SGTYRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1248 Query: 64 LARRATE 70 L R E Sbjct: 1249 LIRHIKE 1255 >gi|150002960|ref|YP_001297704.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931384|gb|ABR38082.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1440 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED+ ++R+F+ + L Y VV +G A +K+ EE ++TDI+MP MDGIE Sbjct: 1184 KVMVVEDNAELRQFICEIL-SGTYRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1242 Query: 64 LARRATE 70 L R E Sbjct: 1243 LIRHIKE 1249 >gi|300727906|ref|ZP_07061284.1| DNA-binding response regulator RprY [Prevotella bryantii B14] gi|299774748|gb|EFI71362.1| DNA-binding response regulator RprY [Prevotella bryantii B14] Length = 232 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KILL EDD+++ L + L GY C +G Y + + F + + D++MP+ DG Sbjct: 4 NLKILLCEDDENLGMLLREYLQAKGYAATLCPDGEIGYKEFMKSKFDICVLDVMMPKKDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV + Sbjct: 64 FTLAQEIRQANAEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVFRIEA 118 Query: 117 LL 118 +L Sbjct: 119 IL 120 >gi|291519584|emb|CBK74805.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Butyrivibrio fibrisolvens 16/4] Length = 120 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D MR + L K GY VV NG A DK E L+L DI MPEM Sbjct: 1 MAKNILICDDAAFMRMMIKDILTKNGYNVVGEAENGKIAVDKYAELTPDLVLLDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + E DP+ V+ + A+ ++ + KPF ++ V +++ Sbjct: 61 DGIGALKAIKEKDPNACVIMCSAMGQQAMVIEAIQSGAKDFIVKPFQAERVLEAVKKVI 119 >gi|326315622|ref|YP_004233294.1| putative two component, sigma54 specific, transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372458|gb|ADX44727.1| putative two component, sigma54 specific, transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] Length = 471 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD DM R L L AGYE+ + + +A ++ L+L+D+ +P DG+ Sbjct: 15 RILVVDDDADMLRLLSLRLNAAGYEITAVPSAEAALAQLETSRPQLVLSDVRLPGRDGLA 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L P L V+ +T + ++ A L+KP+ +DL++++ + L + Sbjct: 75 LFDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDAKDLLDKIAQALALS 132 >gi|218697712|ref|YP_002405379.1| transcriptional regulatory protein ZraR [Escherichia coli 55989] gi|256021675|ref|ZP_05435540.1| transcriptional regulatory protein ZraR [Shigella sp. D9] gi|332282918|ref|ZP_08395331.1| transcriptional regulatory protein ZraR [Shigella sp. D9] gi|218354444|emb|CAV01260.1| fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator ; sigma54 interaction protein [Escherichia coli 55989] gi|332105270|gb|EGJ08616.1| transcriptional regulatory protein ZraR [Shigella sp. D9] Length = 441 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|78222276|ref|YP_384023.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193531|gb|ABB31298.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 462 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR---EEPFSLLLTDIVMP 57 M +IL+ +D++ +RR+L K Y+V + +G S ++ E +LL D+ MP Sbjct: 1 MKARILICDDEEGIRRYLQKMFLAKEYDVETFADGTSLLARIEGGTEGDADILLQDVRMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +MDGIE+ +R +L P + V+ +T F + ++ ++KPF Sbjct: 61 DMDGIEVLKRVKKLRPAMPVVVMTAFGTIDAAVEAIKLGAYDYVTKPF 108 >gi|330954843|gb|EGH55103.1| helix-turn-helix, Fis-type [Pseudomonas syringae Cit 7] Length = 461 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|320162523|ref|YP_004175748.1| putative response regulator [Anaerolinea thermophila UNI-1] gi|319996377|dbj|BAJ65148.1| putative response regulator [Anaerolinea thermophila UNI-1] Length = 325 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + + L AGY V++ NG A R+ L+L+DI+MP MDG + Sbjct: 9 RILLVEDDGSLLEVVRDILSDAGYHVITAANGEEALQAFRQAHPDLILSDIMMPVMDGFQ 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVN 115 L +++ + V FI A SNA + L KPF +L+ V Sbjct: 69 LLEAVRQMEAGMLVPFIFLSARTERYDTSNARRLGADDYLFKPFSADELLTAVE 122 >gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 235 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+Q ILL EDD + L+KAL K GY + + +G + + L+L D++MP++D Sbjct: 1 MSQHILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLMMPKVD 60 Query: 61 GIELARR 67 G+E+ RR Sbjct: 61 GMEVIRR 67 >gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 230 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+ + L + GY+V + +NG A + +E L++ D++MP+MDGI Sbjct: 6 QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGI 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E R + P+ K F+ A + A + ++KP R L++ +N +L Sbjct: 66 EACRLMRAM-PEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAIL 123 >gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] Length = 224 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED++D+R L K L K Y C NG A D + + ++ DI++P +DG+E Sbjct: 2 RLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGIDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ E D V+F+T + L KPF +L+ V ++ K Sbjct: 62 LLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRK 119 >gi|90579925|ref|ZP_01235733.1| putative response regulator [Vibrio angustum S14] gi|90438810|gb|EAS63993.1| putative response regulator [Vibrio angustum S14] Length = 459 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ ++L+ EDD+ +R L+ L AGY+ + + A ++ E ++++D+ M M Sbjct: 1 MNQTRVLVVEDDEGLREALVDTLALAGYQWIEAESAEHALVIMKSETVDIVVSDVQMAGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ L R P + V+ +T +A + + ++KPF L+N V R Sbjct: 61 DGLALLRSIKLNWPKIPVLLMTAYANIEDAVAAMREGAIDYMAKPFAPEVLLNMVGRYAP 120 Query: 120 IKN 122 IK Sbjct: 121 IKK 123 >gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU121] Length = 241 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E ++G AY E ++ +L D+++PEMD Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVATQLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 15/123 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 K+L+ ED++ +R F++ L + G++V+ +G A K++ P + L D+++P +DG Sbjct: 3 KVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGIDGF 62 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ RR E + + ++F+T A+++ D + +SKPF +L+ + Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDH-------VSKPFSPTELIARIQ 115 Query: 116 RLL 118 LL Sbjct: 116 SLL 118 >gi|256824206|ref|YP_003148166.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687599|gb|ACV05401.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 229 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%) Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 MNQ +LL EDD+ +R L + G+ V + ++G D +R E F + + D++ Sbjct: 1 MNQTQTAVHVLLVEDDEMLRETTALVLERQGFTVSTASDGVEGLDALRRETFDVAVVDVM 60 Query: 56 MPEMDGIELARRATELDPDLKVMFIT 81 MP MDGI AR+ E DL ++ +T Sbjct: 61 MPRMDGITFARKVRE-GSDLPIVLLT 85 >gi|258404338|ref|YP_003197080.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] gi|257796565|gb|ACV67502.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] Length = 449 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 55/106 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +RR L K L A V + N A + V + P+ +L+ DI +P+ DG++L Sbjct: 7 VLIVDDEASIRRLLHKELSSANRAVHTAENAQQAREAVGQHPYDVLVLDIRLPDGDGLDL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E+ PD + + ITG + ++ ++KPF+L L Sbjct: 67 LAEFKEVLPDAETILITGHGDIDSAVEAMKIGAYDYITKPFNLDRL 112 >gi|239625722|ref|ZP_04668753.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519952|gb|EEQ59818.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 529 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 5/85 (5%) Query: 4 KILLAEDDDDMRRFLIKALG---KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 K+++A+D+ + R L++AL G EV + NG A + ++ +L+TDI MP Sbjct: 3 KVIIADDERLICR-LVQALADWDSLGMEVTALAENGLEALELIKSREPDILITDIRMPGC 61 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 DG+EL R A EL PDL+V+ I+G+A Sbjct: 62 DGLELIRSAKELMPDLEVVIISGYA 86 >gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 228 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ MR L+ L K Y+ + +NG A D ++ + F L+L D++MPEMDG+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 64 LARRATEL 71 R E Sbjct: 67 ACMRIREF 74 >gi|119513685|ref|ZP_01632685.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119461659|gb|EAW42696.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 366 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 10/125 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D D FLIK + + GY + + NGA A ++ + P L+L D++MP MDG Sbjct: 9 EKILVVDDSPD-NVFLIKTILQGEGYIISTAENGADALVELEKSPCDLVLLDLMMPGMDG 67 Query: 62 IELARRA---TELDPDLKVMFITGFAA--VALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ RR T+ P + ++ IT A VA D A + KP L +L+ V Sbjct: 68 YEVTRRIRGDTKFQPYIPILLITAHDAPNVAKGLDLGAD---DFIRKPVTLDELLARVRS 124 Query: 117 LLTIK 121 LL +K Sbjct: 125 LLRLK 129 >gi|116751182|ref|YP_847869.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700246|gb|ABK19434.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 463 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 64/119 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + ++++L GY+V ++GA A ++ F +++TD+ MP M G+E Sbjct: 6 RVLVVDDEPLTLQLVVESLTVEGYDVQIVSSGAEAISASQKNDFDVVITDLAMPGMGGME 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + TE PD V+ +TG+ + + L+KP +L +L+ + R I++ Sbjct: 66 VLAHFTEHHPDTFVVVVTGYGTIETAVGAMKRGAFDYLAKPANLDELLFTLKRAQEIRS 124 >gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 235 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D++++R L +L GYEVV+ +G A D VR +L+ D++MP MDG Sbjct: 9 KVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGFG 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR D +F++ +V + ++KPF L ++V + LL Sbjct: 69 LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLL 123 >gi|320353635|ref|YP_004194974.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122137|gb|ADW17683.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1066 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ILL ED+ + L GY V+ + A RE LL+TD++MP M+G Sbjct: 940 ILLVEDEQVLLEMSEAMLETLGYTVLIASTAEEALRWAREYTGVIDLLITDVIMPGMNGK 999 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA R T + P ++ +F++G+ A + + + + KPF L +V L Sbjct: 1000 ELAARLTAIRPAMRCLFMSGYPADVIAHQGMIEQGVRFIQKPFTKTALAAKVREAL 1055 >gi|224372016|ref|YP_002606181.1| sensory box histidine kinase/response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223694735|gb|ACN18017.1| sensory box histidine kinase/response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 1050 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL +D++ + AL + GY V S + A + R P F L++TD+ MP+M Sbjct: 927 EGILLVDDEEGIITMEKLALERLGYRVTSRTSSIEALEAFRVNPDKFDLVITDMAMPKMP 986 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA ++ PD+ ++ TGF+ + +L KP ++DL ++ +L Sbjct: 987 GDKLAVELIKIRPDIPILLCTGFSESMSEEKIKSLGVRGLLLKPIIIKDLAKKIREIL 1044 >gi|83648468|ref|YP_436903.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636511|gb|ABC32478.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 120 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+K+L+ +D + + L + + A Y+ V+ +G A K R+E SL+L DI+M +MD Sbjct: 1 MNKKVLIVDDSETDLKHLEQIVSGAAYQTVTARSGEEAISKARKEKPSLILMDIIMGDMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVL-SKPFHLRDLVNEVN 115 G R + DP+L V+F++ ++ A + AK L SKP+ +++++++ Sbjct: 61 GFSTCREIAQ-DPELSKIPVVFVSS-KNQKVDHIWAAKQGAKALVSKPYKNEEILSQLH 117 >gi|313901708|ref|ZP_07835138.1| response regulator receiver protein [Thermaerobacter subterraneus DSM 13965] gi|313468026|gb|EFR63510.1| response regulator receiver protein [Thermaerobacter subterraneus DSM 13965] Length = 131 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R FL AL + GY+V+ +G +A RE L+L D VMP M+G Sbjct: 9 GRRVLVVDDVPAVRAFLQLALAEQGYQVMLAGDGQTALQMAREVQPDLILLDWVMPRMNG 68 Query: 62 IELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ RA DP LK V+ +TG +V ++ + +L KPF + DL Sbjct: 69 AQVL-RALRRDPRLKQVPVVLMTG--SVGVDEIAAGYGVQWILEKPFGVTDL 117 >gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 1010 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 6/120 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL ED+ + L GY V NNG A D + + L+L DI MP MDGI Sbjct: 892 RRILLVEDNTVNILTISDYLHSRGYTVAVANNGQEALDSIEQAQPELILMDIQMPVMDGI 951 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSN----APKNAKVLSKPFHLRDLVNEVNRLL 118 E RR + P + I A+A+ D A NA L+KP LR LV + ++ Sbjct: 952 EATRRLRAM-PAYSEIPIIALTALAMPGDRERCLAAGANA-YLTKPISLRHLVQMIEEMV 1009 >gi|307296785|ref|ZP_07576603.1| response regulator receiver protein [Sphingobium chlorophenolicum L-1] gi|306877698|gb|EFN08924.1| response regulator receiver protein [Sphingobium chlorophenolicum L-1] Length = 95 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD +R+ L+ A GKAG E + +G +A V L++ DI MP MD Sbjct: 6 MPSTILIVDDDPHIRQLLVFAFGKAGLETIEATDGEAALAAVERHAPDLVILDINMPRMD 65 Query: 61 GIELARR 67 G+E+ RR Sbjct: 66 GLEVCRR 72 >gi|251772448|gb|EES53015.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Leptospirillum ferrodiazotrophum] Length = 465 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 53/106 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +M L + L + G+ V NG A +K+ E + +++D+ MP +DG+EL Sbjct: 9 ILVVDDEPEMAIALGETLRQDGFRVSLAQNGKEALEKLSREEYGWVISDVRMPSVDGMEL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 P +V+ +TG+ V + L+KPF DL Sbjct: 69 LSHLRSTAPLTRVILMTGYGTVPQAVAAMQQGAVNFLTKPFKAEDL 114 >gi|251771974|gb|EES52546.1| response regulator receiver protein [Leptospirillum ferrodiazotrophum] Length = 139 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 65/118 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ EDDD L + L + ++V + ++ A+A + + E P L+L+DI MPE G Sbjct: 21 KRSILVVEDDDVALDLLAEILRRHHFQVWTASSVAAALEFLEERPVDLVLSDIRMPERGG 80 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++L ++ E + V+ ++ F L ++ + ++ KPF +++++ +N+ L Sbjct: 81 MDLLKQIRESQSRIPVVLLSAFGDEHLWVEALSAGAVDLIPKPFKKQEIIDVINKTLA 138 >gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 230 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+ + L + GY+V + +NG A + +E L++ D++MP+MDGI Sbjct: 6 QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGI 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E R + P+ K F+ A + A + ++KP R L++ +N +L Sbjct: 66 EACRLMRAM-PEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAIL 123 >gi|239626319|ref|ZP_04669350.1| response regulator receiver protein [Clostridiales bacterium 1_7_47_FAA] gi|239516465|gb|EEQ56331.1| response regulator receiver protein [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 54/114 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +ILL EDD ++ + L +AGYE C G A+ E P+ +++ D ++P+MD Sbjct: 5 MNMRILLVEDDRELSGTIKLQLEQAGYETDCCGQGQEAFYYASEYPYDVIILDRMLPQMD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+ + + +D V+ T V D L KP+ +L+ + Sbjct: 65 GLSVLQGLRRMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARI 118 >gi|255039089|ref|YP_003089710.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254951845|gb|ACT96545.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 224 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L ED+ + + +L G+EV+ NG ++ R +++ DI+MP+MDG + Sbjct: 4 VLFIEDEPALGMIVKDSLTYRGFEVLYAANGVEGLEQFRLHRPDIVVADIMMPDMDGFTM 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A DP + +MF+T + A L KPF L +L+ +N LL Sbjct: 64 AEHIRRDDPHVPIMFLTARSQTADVVRGFELGGNDYLKKPFSLEELIVRINALL 117 >gi|198276924|ref|ZP_03209455.1| hypothetical protein BACPLE_03129 [Bacteroides plebeius DSM 17135] gi|198270449|gb|EDY94719.1| hypothetical protein BACPLE_03129 [Bacteroides plebeius DSM 17135] Length = 1393 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+D+R FL + LG +EVV+ +G + ++ R L+++D+VMP G E Sbjct: 1128 KVLIVEDDNDVREFLKEELG-VYFEVVAEADGDAGLERARNYDADLIISDVVMPGCSGFE 1186 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L R+ L D I A+ N K + ++KPF R L+ +L+ Sbjct: 1187 LTRK---LKTDFNTSHIPVILLTAMTSVDNHVKGVECGADAYITKPFSPRLLLTRAFKLI 1243 >gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 510 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D + + L KAG+ V++ +G A V L+L D+VMPEMDG E Sbjct: 7 QILLVDDTVANLQLVSDFLMKAGFNVLAVKSGIQALKIVAITEPDLILLDVVMPEMDGFE 66 Query: 64 LARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 + RR A E D+ V+F+T A A NP S K K+ +SKP L +++ V Sbjct: 67 VCRRLKAQEETQDIPVIFMTAVADRA-NP-SYKIKGLKLGAVDYISKPIQLEEVLLRVQT 124 Query: 117 LLTIK 121 L ++ Sbjct: 125 HLQLR 129 >gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 226 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + + L + L + GY+ +G V ++ + L++ DI++P+++GI+L Sbjct: 3 ILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAYDLIIMDIILPKINGIDL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E PDL ++ +T + L KPF R+L + LL Sbjct: 63 CREIKESYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLL 116 >gi|312884914|ref|ZP_07744604.1| flagellar regulatory protein FleQ [Vibrio caribbenthicus ATCC BAA-2122] gi|309367391|gb|EFP94953.1| flagellar regulatory protein FleQ [Vibrio caribbenthicus ATCC BAA-2122] Length = 469 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 59/121 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGY + ++ A K++ ++++D+ M M G Sbjct: 5 QSKVLIVEDDEGLREALVDTLALAGYSWLEADSAEDALVKLKSHHIDIVVSDVQMAGMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L R + P L V+ +T +A + + ++KPF L+N V+R K Sbjct: 65 LALLRNIKQHWPHLPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAPTK 124 Query: 122 N 122 + Sbjct: 125 S 125 >gi|298484713|ref|ZP_07002815.1| Sigma-54 dependent DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160746|gb|EFI01765.1| Sigma-54 dependent DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 515 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129 >gi|289649621|ref|ZP_06480964.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 678 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 +L+ ED+ +R +++ L + GY+V + A + + L+++D+ +P M+G + Sbjct: 559 VLVVEDETVVRSLIVEVLCELGYQVREAADAQEAIPILESIQRIDLMISDVGLPGMNGRQ 618 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA P LKV+ TG+A + N N ++++KPF + L N+++ LL+ Sbjct: 619 LADLGQARRPGLKVLLATGYAEGS-NVSGYLASNMEIITKPFAIDTLANKISELLS 673 >gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1138 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ ++ + L +AG + +NG A + V P+ L+L D+ MP MDG+ Sbjct: 880 RVLVAEDNPVNQQLTLALLRRAGLNAEAVSNGEEAVEAVTARPYDLVLMDVQMPVMDGLM 939 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR L + + I A A+ D+ A + LSKP + R L++ + R + Sbjct: 940 ATRRIRGLSGRVARIPIIALTANAMQGDATICLEAGMDDYLSKPINARKLLDAIARFV 997 >gi|224367384|ref|YP_002601547.1| histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223690100|gb|ACN13383.1| histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 381 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 7/84 (8%) Query: 3 QKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPE 58 + IL +DD+ +M R +++ LG Y V++ N+GA+A + E F L++ D++M + Sbjct: 262 ETILFVDDDELILEMGRHMLEDLG---YRVITSNSGANAIEIYTSGEDFDLVVLDMIMDD 318 Query: 59 MDGIELARRATELDPDLKVMFITG 82 MDG E RR +DPD+KV+ TG Sbjct: 319 MDGPETFRRLQAIDPDVKVLISTG 342 >gi|168705337|ref|ZP_02737614.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1013 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMD 60 + +LL ED+D +R+F AL GY V+ NG A A P LLLTD+VMP M Sbjct: 892 ETVLLVEDEDGVRQFSRLALETQGYTVLEAANGFDALAAADAHAGPIHLLLTDVVMPRMS 951 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E++ +KV++++G+ A+ L KPF L ++ +L Sbjct: 952 GREVSEAVRARYEGVKVLYVSGYTDDAVVRHGIVEATDAFLQKPFTPWSLARKIRTVL 1009 >gi|156934011|ref|YP_001437927.1| hypothetical protein ESA_01837 [Cronobacter sakazakii ATCC BAA-894] gi|156532265|gb|ABU77091.1| hypothetical protein ESA_01837 [Cronobacter sakazakii ATCC BAA-894] Length = 406 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 11/131 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ +D RR L LGK GYEV+ NG +A D + +P +++L+D MP MDG+ Sbjct: 5 QRVLIVDDSTVYRRLLGSMLGKWGYEVLEAVNGVAALDVLATQPVNMVLSDWEMPVMDGL 64 Query: 63 ELAR--RATELDPDLKVMFITGFAAV---ALNPDSNA------PKNAKVLSKPFHLRDLV 111 L + RA + + ++ +T +V AL ++ A P N L H + + Sbjct: 65 TLCQEIRARFQEHYIYLILLTARESVDDLALGFEAGADDFLSKPVNQSELRARLHAGERI 124 Query: 112 NEVNRLLTIKN 122 E+ L +N Sbjct: 125 LELEATLAARN 135 >gi|194434761|ref|ZP_03067012.1| response regulator ZraR [Shigella dysenteriae 1012] gi|194416985|gb|EDX33103.1| response regulator ZraR [Shigella dysenteriae 1012] gi|320179532|gb|EFW54483.1| Response regulator of zinc sigma-54-dependent two-component system [Shigella boydii ATCC 9905] gi|332085401|gb|EGI90571.1| transcriptional regulatory protein zraR [Shigella dysenteriae 155-74] Length = 441 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+G A ++VRE F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L+P + V+ +T +++V Sbjct: 65 IATLKEIKALNPAIPVLIMTAYSSV 89 >gi|332994800|gb|AEF04855.1| chemotaxis protein CheY [Alteromonas sp. SN2] Length = 121 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ + L AGY V + +G A DK + + F +LTD MP MD Sbjct: 1 MSKHILVVDDSISIRQMVEMTLKGAGYTVTTAQDGQEALDKCKSQQFGFVLTDQNMPRMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + L ++ +T A + A + KPF L++ R+L Sbjct: 61 GLTLIKNLRSLSGFNRTPIVMLTTEAGPEMKAKGKAAGATGWMVKPFDPNKLLDVTKRVL 120 >gi|331009953|gb|EGH90009.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 161 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV K+ E ++LTD+ MP M Sbjct: 1 MLNAVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAKLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|330889159|gb|EGH21820.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 191 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M Sbjct: 64 GETVLIVDDEPSVRMLVAEVITGLGYNCLEAGDAQSGLQILQSDTRIDLLISDIGLPGGM 123 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 124 NGREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 182 >gi|242310769|ref|ZP_04809924.1| signal-transduction regulatory protein [Helicobacter pullorum MIT 98-5489] gi|239523167|gb|EEQ63033.1| signal-transduction regulatory protein [Helicobacter pullorum MIT 98-5489] Length = 432 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI + EDD +MR+ L AL + +EVVS + A K+ ++ L++TDI MP+MDGI Sbjct: 2 KIAIVEDDINMRKSLEIALAEYEEFEVVSFKSAKDALKKL-DDSIDLVITDINMPQMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E R L+ + + ITG A + DS L+KPF + LV ++R Sbjct: 61 EFLRT---LNGRYEALIITGNATLNKAIDSIRLGVKDFLTKPFDIETLVEAIHR 111 >gi|218660355|ref|ZP_03516285.1| two-component response regulator protein [Rhizobium etli IE4771] Length = 149 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP + Sbjct: 1 MNEAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ L ++ E+D ++ V+ +TG V L + + KPF L + R + Sbjct: 61 DGMTLMQKIREIDQEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAM 119 >gi|328952161|ref|YP_004369495.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452485|gb|AEB08314.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 978 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL +D+ + + L + GYEVV+ ++ A + + +P F L++ D MP + Sbjct: 853 ERILFVDDETTLMEIVKLMLERLGYEVVAKSSSLEALETFKSQPDAFDLIIADQTMPHIT 912 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ LA + PDL + TG + A +VL+KP L +L V L Sbjct: 913 GVALAHEINRIRPDLPFILCTGMIDSSKLEPEKAASIRQVLTKPVSLNELARVVRHTLDT 972 Query: 121 KN 122 K+ Sbjct: 973 KS 974 >gi|294776618|ref|ZP_06742087.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294449533|gb|EFG18064.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1441 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED+ ++R+F+ + L Y VV +G A +K+ EE ++TDI+MP MDGIE Sbjct: 1185 KVMVVEDNAELRQFICEIL-SGTYRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1243 Query: 64 LARRATE 70 L R E Sbjct: 1244 LIRHIKE 1250 >gi|262402142|ref|ZP_06078703.1| signal transduction histidine kinase [Vibrio sp. RC586] gi|262350924|gb|EEZ00057.1| signal transduction histidine kinase [Vibrio sp. RC586] Length = 569 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 NQ IL+ ED + + L K GY+V NG A + + F L+L DI MP MD Sbjct: 451 NQHILVVEDTKTNQMVIQLLLNKMGYDVTIAENGREAIELLEMNSIFDLILMDISMPIMD 510 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI ++ + D+ ++ +T A + + ++ KP +D+VN VNR +T Sbjct: 511 GIAATKKIRSKNIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRGKDIVNVVNRFIT 569 >gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] Length = 224 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED ++ +L KAL G+ V N+G A ++ E ++L++ D+ +P ++G+E Sbjct: 2 RILLVEDHPELSHWLQKALTHVGFAVDVANDGIEADHLLQHEKYALVVLDVALPRLNGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + L V+ +T VA L+KPF L +L + LL Sbjct: 62 LLARLRKRGQTLPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALL 116 >gi|253702551|ref|YP_003023740.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251777401|gb|ACT19982.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 677 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + IL+ ED+ D+R L L AGY V+ NG A ++ +L+L D++MP M Sbjct: 556 ETILVVEDEPDLRLLLQNILSGAGYCVLLAENGQVAVERYAAGAGGEIALVLMDMIMPGM 615 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E R +DP KV++ +G+ + + ++L KP +L+ +V +L Sbjct: 616 SGKEACRAIRAIDPAAKVLYTSGYTMDIIKSRDLLEEGTELLMKPVRPLELLKKVREML 674 >gi|218782540|ref|YP_002433858.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763924|gb|ACL06390.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 934 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEM 59 ++ ILL +D+ D+ GY V + C++ A A E F L++TD MPE+ Sbjct: 781 DETILLVDDESDLLDSYTALFRHYGYHVSAHQCSSQAFARFMSGPEQFDLVVTDQTMPEL 840 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 G+ELA + ++ P L V+ TG+++ A + S K++ KPF + + +V ++L Sbjct: 841 TGLELAAKIMKVRPGLPVILCTGYSSDAGDEQSFEKAGIRKMIMKPFAFDEFMKDVRKIL 900 >gi|163853656|ref|YP_001641699.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665261|gb|ABY32628.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 1086 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +G + ++ + LL+TD+ +P M+ Sbjct: 966 ETVLIVDDEPTVRMLVTEVLEDLGYTAIEAADGPAGLKVLQSDVRLDLLVTDVGLPGGMN 1025 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A L PDLKV+FITG+A A + + +V++KPF + L + ++ Sbjct: 1026 GRQVADAGRVLRPDLKVLFITGYAENAAVGNGHLEPGMQVITKPFVMEVLAARIKEMI 1083 >gi|330939479|gb|EGH42820.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. pisi str. 1704B] Length = 461 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG V+S +++ + ++++DI M MDG+E Sbjct: 12 QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + DPDL V+ ITG V L + L KPF +++ V R L ++ Sbjct: 72 LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALRR 130 >gi|327390391|gb|EGE88732.1| response regulator [Streptococcus pneumoniae GA04375] Length = 245 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 HLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|193213574|ref|YP_001999527.1| response regulator receiver protein [Chlorobaculum parvum NCIB 8327] gi|193087051|gb|ACF12327.1| response regulator receiver protein [Chlorobaculum parvum NCIB 8327] Length = 120 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 8/114 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +DD +R+F+ L Y V NG K +EE +++TD++MP+ +GI Sbjct: 2 KILVIDDDPSVRKFIATTLKNENYTVTEAENGEDGLKKFQEERDIGIIITDLLMPDKEGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPD-----SNAPKNAKVLSKPFHLRDLV 111 E +++P +K++ I+G P+ ++A L KPF ++L+ Sbjct: 62 ETIMEIRKVNPSIKILAISGGGKAG--PENYLLLADAVGANATLKKPFSGQELI 113 >gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 14/121 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD D+ + LGK GY+++ +G A V+ L++ DI+MP MDG E+ Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R E + ++F++ + + + D ++KPF+ +L+ VN Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADD-------YMTKPFNPMELLARVNAQ 120 Query: 118 L 118 L Sbjct: 121 L 121 >gi|167623377|ref|YP_001673671.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167353399|gb|ABZ76012.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella halifaxensis HAW-EB4] Length = 450 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ V + A ++ + F L+++D+ M + GI Sbjct: 5 KLLLVEDDASLREALLDTLMLAHYDCVDVGSAEEAILALKADRFDLVISDVQMEGIGGIG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 L + P L V+ +T +A + + NA K V L+KPF L+N+V+R L K Sbjct: 65 LLNYLQQHQPKLPVLLMTAYATI--DNAVNAMKLGAVDYLAKPFSPEVLLNQVSRYLPAK 122 >gi|15896896|ref|NP_350245.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026765|gb|AAK81585.1|AE007861_7 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325511071|gb|ADZ22707.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 225 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++I L ED+ + L K L K GY V + +G SA +++++ P L + DI++P++D Sbjct: 1 MGKRIYLVEDEQSLNILLDKYLTKEGYSVTTFADGNSAKERIKDMP-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + + + V+F++ + L D LSKPF R+LV Sbjct: 60 GYELIKSIKQNNKATPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELVIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|332291060|ref|YP_004429669.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332169146|gb|AEE18401.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 236 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L Y V NG ++K +++ + L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGTVLKDYLMMNDYNVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + D+ ++F+T A AL D K KV L+KPF Sbjct: 65 FTLAKEIREKNEDIPIIFLT---AKALKED--VLKGYKVGADDYLNKPF 108 >gi|313204333|ref|YP_004042990.1| integral membrane sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] gi|312443649|gb|ADQ80005.1| integral membrane sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] Length = 1279 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 3/106 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ F+I AL A ++V + +G A++ ++ E ++++D++MP MDG E Sbjct: 1033 RLLIVEDNVDLQNFMISAL-SAEFDVSAAKDGVVAWEIIKNEIPDIIISDVMMPNMDGFE 1091 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 L R ++T + V+ +T A A L+KPF + Sbjct: 1092 LCRLIKSTYETSHIPVVLLTALAGKAEQLHGLGLGADSYLTKPFDM 1137 >gi|309791780|ref|ZP_07686268.1| response regulator receiver sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226186|gb|EFO79926.1| response regulator receiver sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 396 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 14/123 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL ED+ D +R + + LG GY V+ +G S RE +L+L D+ +P +DG E Sbjct: 5 KILYIEDNRDNQRLVERVLGARGYHVLIAEDGPSGISLARESHPALILVDLGLPGLDGYE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN--APKNAKV------LSKPFHLRDLVNEVN 115 R L P L TG +AL D++ A + A V L+KP R L N++ Sbjct: 65 TTTRLRSL-PHL-----TGIPIIALTADASNEAREQALVAGCDGYLTKPIDTRQLPNQIA 118 Query: 116 RLL 118 L Sbjct: 119 EFL 121 >gi|303241292|ref|ZP_07327797.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] gi|302591131|gb|EFL60874.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] Length = 310 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 16/125 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D + M + + L A Y+VV +NG KVREE L++ D+VMP MDG Sbjct: 4 KKILIIDDTEFMTKLITDILSSADYDVVIASNGLQGIQKVREEKPDLVILDVVMPGMDGF 63 Query: 63 ELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 E+ + R E + + ++ +T A + + D + KPF+ R+LV+ Sbjct: 64 EVCKILRDDESNNLMPIIMLTAQDNEDDKLAGLEIGADD-------YIIKPFNGRELVSR 116 Query: 114 VNRLL 118 V L Sbjct: 117 VRNTL 121 >gi|293555105|ref|ZP_06674701.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291601706|gb|EFF31962.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] Length = 85 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + L++ L K GY V S G A D + ++ F L L DI++PE+DG E Sbjct: 2 KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 61 Query: 64 LARRATELDPDLKVMFITG 82 + E DL V+F+T Sbjct: 62 VFAYMREY--DLPVIFLTA 78 >gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1385 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L AGY+V + +G +A VR L+++D++MP +DG+ Sbjct: 637 RLLVADDNADMREYLARLLHSAGYQVDTVKDGLAALQAVRAHAPDLVISDVMMPGLDGLG 696 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + V+ ++ A + + L KPF +L+ V Sbjct: 697 LVAALRADPRTASVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARV 749 >gi|238927451|ref|ZP_04659211.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238884733|gb|EEQ48371.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 138 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++L+ +D MR + L K GYE+V NG A +K +E L+ DI MPEM Sbjct: 19 MATRVLVVDDAAFMRMMVKDILSKNGYEIVGEAENGMKALEKYQELKPDLVTMDITMPEM 78 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGI + ++DP KV+ + A+ ++ + KPF Sbjct: 79 DGITAVKEIKKVDPGAKVVMCSAMGQQAMVIEAIQAGARDFIVKPFQ 125 >gi|86131377|ref|ZP_01049975.1| two-component system response regulator [Dokdonia donghaensis MED134] gi|85817822|gb|EAQ38990.1| two-component system response regulator [Dokdonia donghaensis MED134] Length = 225 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 63/114 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+ + + + ++L + V C +G A+ K +++ +L+ D++MP+MDG L Sbjct: 6 LLLAEDEPALGQIVKESLETRDFTVTLCPDGEIAFKKFKQDTPDILVLDVMMPKMDGFTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ ++ ++ ++F+T + A + + L KPF + +L+ + LL Sbjct: 66 AKEVRAVNDEIPIIFLTAKSQPADVVEGFSIGGNDYLKKPFSMEELIVRIKNLL 119 >gi|330811807|ref|YP_004356269.1| two-component system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379915|gb|AEA71265.1| two-component system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 448 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ D+R L LG+ + S N A A + E F L LTD+ +P+ G+ Sbjct: 7 QRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 EL + + P L V IT + ++ D+ L+KP LR+LV RL Sbjct: 67 ELVQHIQQRYPQLPVAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRL 124 >gi|307824939|ref|ZP_07655161.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307733986|gb|EFO04841.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 2035 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ +D + R LI L + G+E NG D V L+L D+VMPEM G+ Sbjct: 1816 QRVLVVDDAEVNRALLIDMLCRLGFETDEAANGRVCLDSVETRKPDLILLDMVMPEMGGL 1875 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 E ARR ++ P I +A A D A V L+KP ++ L+ ++ LL Sbjct: 1876 ETARRLRQM-PGFGQTPIVAVSAGASGIDVAEAMAAGVNVFLTKPIEIKRLMGQIAGLLK 1934 Query: 120 I 120 + Sbjct: 1935 L 1935 >gi|304438438|ref|ZP_07398378.1| chemotaxis response regulator CheY [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368521|gb|EFM22206.1| chemotaxis response regulator CheY [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 120 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++L+ +D MR + L K GYE+V NG A +K +E L+ DI MPEM Sbjct: 1 MATRVLVVDDAAFMRMMVKDILSKNGYEIVGEAENGMKALEKYQELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGI + ++DP KV+ + A+ ++ + KPF Sbjct: 61 DGITAVKEIKKVDPGAKVVMCSAMGQQAMVIEAIQAGARDFIVKPFQ 107 >gi|291278497|ref|YP_003495332.1| hypothetical protein DEFDS_0064 [Deferribacter desulfuricans SSM1] gi|290753199|dbj|BAI79576.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 124 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ ED+ D L + G+ V +NG AY +++ +SL++TDI MP MD Sbjct: 1 MPYKLLIVEDNTDTLLGLKTYFERKGFSVDIVDNGKDAYAMIQDNSYSLVITDINMPFMD 60 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+ + +D +L V+ IT F+ Sbjct: 61 GLNFLSKIRSIDEELPVIVITAFS 84 >gi|218532511|ref|YP_002423327.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524814|gb|ACK85399.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1092 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +G + ++ + LL+TD+ +P M+ Sbjct: 972 ETVLIVDDEPTVRMLVTEVLEDLGYTAIEAADGPAGLKVLQSDVRLDLLVTDVGLPGGMN 1031 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A L PDLKV+FITG+A A + + +V++KPF + L + ++ Sbjct: 1032 GRQVADAGRVLRPDLKVLFITGYAENAAVGNGHLEPGMQVITKPFVMEVLAARIKEMI 1089 >gi|158319716|ref|YP_001512223.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139915|gb|ABW18227.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 220 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI L ED+ + L + +AGY + S +NG A + + E+P L + DI++P MDG Sbjct: 2 KKIFLVEDEKLLVDLLTSYIMEAGYCIKSFHNGLDAKNSILEKP-DLWVLDIMLPGMDGY 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + PD+ V+F++ A L KPF R+LV +NR+L+ Sbjct: 61 ALIKEIKSKTPDVPVIFMSARNAELDRVVGLEMGGDDYLPKPFLPRELVLRINRILS 117 >gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 222 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ ED+ D+ R + L +AGYE ++ +G S REE L++ D+ +P++D Sbjct: 1 MEQRILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPDLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G E+ RR + + + ++ +T A+ ++KPF+ +LV V Sbjct: 61 GAEVTRRLRK-NSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVK 114 >gi|303245719|ref|ZP_07332002.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] gi|302492982|gb|EFL52847.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] Length = 120 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ ++ L + L G E +G A DKVR + L + D+ MP + G++ Sbjct: 2 RILLVDDEKELVSALAERLNLRGIEAAYATDGDEASDKVRAGAYDLAVLDMKMPGLSGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L ++ L P ++ +F+TG + + + + + A L KP + DL+ +N L Sbjct: 62 LKKKLQRLRPGMRFIFMTGHGSEE-DFRAGSAEAAGYLVKPVRIDDLIAAINTALA 116 >gi|239623645|ref|ZP_04666676.1| response regulator receiver protein [Clostridiales bacterium 1_7_47_FAA] gi|239521676|gb|EEQ61542.1| response regulator receiver protein [Clostridiales bacterium 1_7_47FAA] Length = 546 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +I+L +D++++R+ +I+ + +AG++VV NG A +KV L+LTDI MP MD Sbjct: 5 RIILVDDEEEVRQSIIRKINWTEAGFQVVGDAENGEDAMEKVEALEPDLILTDIRMPYMD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ LA + + P +K++ +G+ + + + KP ++ +L + R+ Sbjct: 65 GLTLAEKVRQKYPSIKIVIFSGYDDFEYAKQAIKLNVTEYILKPVNVEELTAILKRI 121 >gi|227537308|ref|ZP_03967357.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242811|gb|EEI92826.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 234 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 8/126 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ ILL ED+ ++ +I+ L + GY+V+ +G A + VR + L++ DI++P+M+ Sbjct: 1 MNE-ILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQMN 59 Query: 61 GIELARRATELD-PDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+++ + + DL V+ +T + V L D+ A +SKPF L +L + Sbjct: 60 GLDVCKAIRDSGYTDLPVLMLTALGSPENVVLGLDNGAD---DYMSKPFKLIELKARIRT 116 Query: 117 LLTIKN 122 LL K+ Sbjct: 117 LLRRKS 122 >gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae OXC141] Length = 235 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + R L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ + A+ L D L+KPF R+L+ Sbjct: 61 GIEVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAVL 118 >gi|157369271|ref|YP_001477260.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568] gi|157321035|gb|ABV40132.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568] Length = 870 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 +L+ ED++D+R L + L + GY + C + A +R+ P +L++D+++P E+DG+ Sbjct: 745 VLVLEDENDVRHTLCEHLHQLGYLTLDCADSHEALALLRQTPDIGVLVSDLMLPGELDGV 804 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ A E++P L + I+G + + + P N ++L KPF R L + R Sbjct: 805 QVIGLAREINPRLTALLISG-QDIRRHHEDTLP-NVELLRKPFSQRQLALALQR 856 >gi|83647885|ref|YP_436320.1| response regulator [Hahella chejuensis KCTC 2396] gi|83635928|gb|ABC31895.1| Response regulator [Hahella chejuensis KCTC 2396] Length = 203 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL---LLTDIVMP 57 MNQ + + EDD+ +R L+ L GY S +SA + EE L L+ DI MP Sbjct: 4 MNQIVYVVEDDEAVRDSLLLLLRAEGY---STKGYSSAQSFLEEEVADLNGCLVLDIRMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G+EL ++ E+ L V+F+TG VA+ ++ + KP+ DL+ +V Sbjct: 61 GMTGMELHKKLLEMGCALPVIFVTGHGDVAMAVEAMKLGAVDFVQKPYREEDLLEKVKGA 120 Query: 118 LTI 120 L + Sbjct: 121 LAM 123 >gi|330505053|ref|YP_004381922.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas mendocina NK-01] gi|328919339|gb|AEB60170.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas mendocina NK-01] Length = 751 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++++L+ +D +R K L GY+V +G ++ +R EPF LL+TDI MP MD Sbjct: 626 ISKRVLVVDDSLTVRELERKLLLSRGYQVAVAVDGMDGWNALRAEPFDLLITDIDMPRMD 685 Query: 61 GIELARRATELDPDLKVM 78 GIEL + + DP L+ + Sbjct: 686 GIELVTQVRQ-DPRLRSL 702 >gi|323698770|ref|ZP_08110682.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. ND132] gi|323458702|gb|EGB14567.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio desulfuricans ND132] Length = 450 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 59/110 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL +D+ ++ L ++LG+ GY V + + G A+ + E + L+++D+ M M Sbjct: 1 MPEKILLVDDEQELLAVLKRSLGRQGYVVDTASTGQEAWKALSETAYDLVVSDLAMEPMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+EL ++ +D + +TG + ++ ++KPF ++L Sbjct: 61 GLELLKQIRTIDHIQPFIIMTGAGTIETAVEAIKLGAYHYITKPFKTQEL 110 >gi|301059863|ref|ZP_07200754.1| putative Nitrogen assimilation regulatory protein [delta proteobacterium NaphS2] gi|300446013|gb|EFK09887.1| putative Nitrogen assimilation regulatory protein [delta proteobacterium NaphS2] Length = 480 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DDD +R K L + GY V + +G + ++ P L++ D+ +P ++G+E Sbjct: 4 ILIIDDDDQLRASFEKLLKEEGYRVETAPSGETGLKRIEALPPDLVILDMRLPGINGLET 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R LDP L V+ +T F ++ + KPF + ++++ + + L Sbjct: 64 FKRINALDPKLPVIIMTAFGTTETAIEATKMGAFDYILKPFDIPEMLDVIRKAL 117 >gi|295098097|emb|CBK87187.1| transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 224 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V N+G +A ++ E +++ + DI MP DG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVNDGRAADHLLQGENYAVAILDIGMPGFDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R + L V+F+T + VA L KPF L +L Sbjct: 62 VVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEEL 108 >gi|295088174|emb|CBK69697.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Bacteroides xylanisolvens XB1A] Length = 457 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ + Sbjct: 1 MMSSILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQSVDLVLSDLRLPDHE 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 GIDLLKWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYIAKPVNPEELLKKISECL 118 >gi|295706008|ref|YP_003599083.1| two-component response regulator CssR [Bacillus megaterium DSM 319] gi|294803667|gb|ADF40733.1| two-component response regulator CssR [Bacillus megaterium DSM 319] Length = 223 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ + L ED+ ++ L L K G++V S NG A + + P L + DI++P++D Sbjct: 1 MSFTLYLVEDEQNLNEVLTLYLQKEGWDVRSFFNGTDAKEMITTPP-HLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G +L R + P + V+FI+ A + L S+ LSKPF R+LV N Sbjct: 60 GYQLIREIKQQTPHVPVIFISARDADIDRVLGLEMGSD-----DYLSKPFLPRELVIRAN 114 Query: 116 RLL 118 +LL Sbjct: 115 KLL 117 >gi|237718881|ref|ZP_04549362.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451659|gb|EEO57450.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1331 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D +R L+ K+ Y V++ NG +K E ++++DI+MPEM G E Sbjct: 1084 KILIVEDNDSLREMLVNIF-KSLYTVITAVNGKEGLEKTCSEMPHIVISDIIMPEMSGTE 1142 Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A + + D + V+ +T A+ N + ++KPF++ L++ N L+ Sbjct: 1143 LC-LAIKQNFDTCHIPVVLLTAKTAIEHNLEGLKMGADDYITKPFNINILLSRCNNLV 1199 >gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 245 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+ Sbjct: 26 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDSTYQLVILDILLPGMN 85 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G EL R +L+ + V+ +T AL+ D N + ++KPF ++ L+ V Sbjct: 86 GHELLREFRKLN-NTPVLMMT-----ALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVE 139 Query: 116 RLL 118 LL Sbjct: 140 ALL 142 >gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 719 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 +ILLAED+ + ++ L + G+EV + NG A D + PF ++L D+ MPEMDG+ Sbjct: 599 RILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLDNSGPFDVILMDVQMPEMDGL 658 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ E ++ ++ +T +A + SKP ++ +LV + +L+ Sbjct: 659 EATKKIREQGNEIPIIALTAYAMEGDREKFLSNGMDAYSSKPVNIDELVQIIGKLV 714 >gi|167842128|ref|ZP_02468812.1| Response regulator [Burkholderia thailandensis MSMB43] Length = 240 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD R L + L AG+++ + N A A D +R P +LL DI +P+ DGI Sbjct: 7 RILVVEDDPITRTMLARYLCSAGFDLRTSGNVAQARDALRAAPADVLLLDINLPDGDGIS 66 Query: 64 LARRATELDPDLKVMFIT---GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR E ++F+T G L ++ ++KPF LR+L+ V LL Sbjct: 67 LARELRE-HSTAGIIFVTQRDGDLDRVLGLETAGD---DYITKPFRLRELLARVRALL 120 >gi|154483227|ref|ZP_02025675.1| hypothetical protein EUBVEN_00928 [Eubacterium ventriosum ATCC 27560] gi|149736035|gb|EDM51921.1| hypothetical protein EUBVEN_00928 [Eubacterium ventriosum ATCC 27560] Length = 223 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 6/112 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L + YE ++ +G A +K++ +P ++L DI MP MD Sbjct: 22 MKYKILVVDDDKELVKMLCRYFNMKQYETITATDGMEALNKIKMKP-DIILLDINMPRMD 80 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE+ R R+ L P ++F+T + ++KPF LR+L Sbjct: 81 GIEVCRLIRSKVLCP---ILFLTARVDEDDKINGLLSGGDDYITKPFSLREL 129 >gi|86159417|ref|YP_466202.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775928|gb|ABC82765.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 135 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D++ +R L +AL GY ++ ++ SA D R +P L + D VMP M G Sbjct: 7 HRILVVDDNEILRTLLAQALESGGYVALAADSAESALDVARFDPPDLCVVDEVMPGMRGS 66 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLLT 119 +L R RA+ DP L+ M I G + VA + A V + KPF L+ V R L Sbjct: 67 DLIRVFRASP-DPRLRTMPIIGLSGVAGADRALLEAGADVAIRKPFAEGPLLELVGRWLA 125 >gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB] gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB] Length = 787 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LLAED R +++ L V NG +A ++VRE + L+L D+ MPEMDG+ Sbjct: 661 RSVLLAEDSWVNREVVVEMLEDQLLVVDVVENGVAAVERVRERDYDLVLMDVQMPEMDGL 720 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPF 105 E RR + P + + I A A D A A + L+KPF Sbjct: 721 EATRRIRAM-PQRERLPIIALTANAFAEDRQACLEAGMNDYLAKPF 765 >gi|254228435|ref|ZP_04921861.1| sigma-54 interaction domain family [Vibrio sp. Ex25] gi|262393586|ref|YP_003285440.1| flagellar regulatory protein FleQ [Vibrio sp. Ex25] gi|151939023|gb|EDN57855.1| sigma-54 interaction domain family [Vibrio sp. Ex25] gi|262337180|gb|ACY50975.1| flagellar regulatory protein FleQ [Vibrio sp. Ex25] Length = 469 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ EDD+ +R L+ L AGYE + + A K++ ++++D+ M M G Sbjct: 3 QSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALLKLKSNTVDIVVSDVQMAGMGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L + + P+L V+ +T +A + + ++KPF L+N V+R IK Sbjct: 63 LALLKNIKQNWPNLPVLLMTAYANIEDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPIK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|319407929|emb|CBI81583.1| transcriptional regulator BatR [Bartonella schoenbuchensis R1] Length = 240 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MD Sbjct: 7 ITQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + DL V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLLTIKN 122 V +L N Sbjct: 119 VKAILRRSN 127 >gi|262376196|ref|ZP_06069426.1| nitrogen regulation protein NR(I) [Acinetobacter lwoffii SH145] gi|262308797|gb|EEY89930.1| nitrogen regulation protein NR(I) [Acinetobacter lwoffii SH145] Length = 491 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G +V S SA D++ E ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGLDVTSFEEAQSALDQLSLEAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLGKVKHSYPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|218778503|ref|YP_002429821.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218759887|gb|ACL02353.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 231 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 60/107 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + ++ +DD + L + +G+ EV + + A + + + P +++TD++MP++DG+E Sbjct: 11 RCVIVDDDRAVGALLAELVGRDNVEVETFTDSRKAVEAIGDRPADIVITDLMMPDVDGLE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RA E +PD+ V+ +TG + ++ + KPF L+++ Sbjct: 71 VLSRAKESNPDVVVIIVTGHGTLESAIEAIKEGAYNYIRKPFKLQEM 117 >gi|154149275|ref|YP_001407283.1| two component transcriptional regulator [Campylobacter hominis ATCC BAA-381] gi|153805284|gb|ABS52291.1| two component transcriptional regulator, winged helix family [Campylobacter hominis ATCC BAA-381] Length = 217 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD R + + L GYEV NG +A K+ + + LL+ D+ +PE+ G E Sbjct: 2 KILLLEDDFSYRISVAEYLSSLGYEVDEAGNGETACTKIAKNSYHLLILDVKVPEISGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + A + M +T A+ + L KPF+L +L Sbjct: 62 VLKYARNIGLKTPTMMMTSLTAIEDLATGYELGCNEYLKKPFNLAEL 108 >gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 902 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD ++ + L K + NG A E F L+L D+ MPEMDGIE Sbjct: 667 ILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFEENEFDLILMDVQMPEMDGIEA 726 Query: 65 ARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +R +++ + + I A A D A + +SKPF D+ +NR+L Sbjct: 727 TKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMDDYISKPFSFDDIYAAINRVL 784 >gi|254563591|ref|YP_003070686.1| sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains [Methylobacterium extorquens DM4] gi|254270869|emb|CAX26874.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains [Methylobacterium extorquens DM4] Length = 1092 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +G + ++ + LL+TD+ +P M+ Sbjct: 972 ETVLIVDDEPTVRMLVTEVLEDLGYTAIEAADGPAGLKVLQSDVRLDLLVTDVGLPGGMN 1031 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A L PDLKV+FITG+A A + + +V++KPF + L + ++ Sbjct: 1032 GRQVADAGRVLRPDLKVLFITGYAENAAVGNGHLEPGMQVITKPFVMEVLAARIKEMI 1089 >gi|240141079|ref|YP_002965559.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains [Methylobacterium extorquens AM1] gi|240011056|gb|ACS42282.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains [Methylobacterium extorquens AM1] Length = 1086 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +G + ++ + LL+TD+ +P M+ Sbjct: 966 ETVLIVDDEPTVRMLVTEVLEDLGYTAIEAADGPAGLKVLQSDVRLDLLVTDVGLPGGMN 1025 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A L PDLKV+FITG+A A + + +V++KPF + L + ++ Sbjct: 1026 GRQVADAGRVLRPDLKVLFITGYAENAAVGNGHLEPGMQVITKPFVMEVLAARIKEMI 1083 >gi|255034925|ref|YP_003085546.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947681|gb|ACT92381.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 647 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 7/122 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+AED+ L K L V NG A +++REEPF L++ D MPEMDG Sbjct: 519 GKKVLVAEDNPINALLLKKYLKAWQLNAVIVGNGKEAVEQLREEPFDLIIMDTRMPEMDG 578 Query: 62 IELARRATELDPDLKVMF-ITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 + AR A E +L V I +A L + A + LSKPF L +++ L Sbjct: 579 FQAARMARE---ELHVKTPILSLSATVLPEEVAQALEAGMNDTLSKPFEPEKLHQKIDLL 635 Query: 118 LT 119 L+ Sbjct: 636 LS 637 >gi|206603014|gb|EDZ39494.1| Putative response regulator receiver protein [Leptospirillum sp. Group II '5-way CG'] Length = 148 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD L + L + G+ V + A ++++++ SL+LTDI MP G++ Sbjct: 19 KVLVVEDDVVALDLLEEILKRGGFGVSVAQSCEEALERLKKDSISLILTDIKMPGKTGMD 78 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + +L P+L V+ +T F L ++ + ++ KPF +++++ V R L+ Sbjct: 79 LLKTVQDLYPELPVVLLTAFGDEHLWVEALSSGAIDLIPKPFRKQEVLDIVQRTLS 134 >gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 902 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD ++ + L K + NG A E F L+L D+ MPEMDGIE Sbjct: 667 ILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFEENEFDLILMDVQMPEMDGIEA 726 Query: 65 ARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +R +++ + + I A A D A + +SKPF D+ +NR+L Sbjct: 727 TKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMDDYISKPFSFDDIYAAINRVL 784 >gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila SL1] gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family [Halorhodospira halophila SL1] Length = 229 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ EDD +R LI +L + G+EV+ + +++R+ P L+L D ++P++ Sbjct: 1 MAVRILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLRQRPPDLILLDWMLPQVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E AR E D ++ I A D ++ V ++KPF R+L V + Sbjct: 61 GVEWARELKEDDQTRQIPIIL-LTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|259047168|ref|ZP_05737569.1| response regulator [Granulicatella adiacens ATCC 49175] gi|259036218|gb|EEW37473.1| response regulator [Granulicatella adiacens ATCC 49175] Length = 245 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 44/70 (62%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 NQ+IL+ ED+ ++ RF+ L GYE C++G + +E + +L D+++PEM+G Sbjct: 18 NQRILIIEDEKNLSRFVELELQHEGYETKVCSDGRTGLQTAIDESWDAILLDLMLPEMNG 77 Query: 62 IELARRATEL 71 +E+ RR ++ Sbjct: 78 LEVVRRLRQV 87 >gi|207744619|ref|YP_002261011.1| composite two component regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] gi|206596025|emb|CAQ62952.1| composite two component regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] Length = 1003 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+AED R L K L GY V +GA+A ++ E F LLTD MP ++ Sbjct: 739 LGAHILVAEDHPINRELLAKQLRLLGYRVTLAEDGAAALQRLSETRFDALLTDCCMPRLN 798 Query: 61 GIELARRATELD------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G ELARR + + P L ++ IT + A + KP L L + Sbjct: 799 GFELARRIRQRERQTPGGPRLAILAITATTLAEEHARCRAVGMDDCVLKPTTLAALQEAL 858 Query: 115 NRLLTIK 121 +RL I+ Sbjct: 859 SRLWHIE 865 >gi|163741068|ref|ZP_02148460.1| sensory box sensor histidine kianse/response regulator [Phaeobacter gallaeciensis 2.10] gi|161385421|gb|EDQ09798.1| sensory box sensor histidine kianse/response regulator [Phaeobacter gallaeciensis 2.10] Length = 741 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEP---FSLLLTDIVMPEM 59 +LL ED+ +R F +AL GY V+ SA D +R E+P + +TD+VMP M Sbjct: 625 VLLVEDEAPVRAFASRALRMRGYTVLEAE---SAEDALRTLEDPGLTVDVFVTDVVMPGM 681 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG R A + PD +V+F++G+A A + N+ L KPF L L V+ L Sbjct: 682 DGPSWVREALKTRPDTRVVFVSGYAEGAFGEAEPSVPNSVFLPKPFSLNQLTETVHEQL 740 >gi|157151302|ref|YP_001449801.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157076096|gb|ABV10779.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 228 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 56/108 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + R ++ AL GY+V S NG A + + +++++ DI+MP M G+E Sbjct: 2 RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTYNVIILDIMMPIMTGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + V+ +T A V + L+KPF L++L+ Sbjct: 62 ALKEIRATGNTTHVIMLTAMAEVDDRVNGLDAGADDYLTKPFSLKELL 109 >gi|148974231|ref|ZP_01811764.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrionales bacterium SWAT-3] gi|145965928|gb|EDK31176.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrionales bacterium SWAT-3] Length = 446 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 55/103 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+I L EDD +R+ + L AG++V + G A V++ F +++D+ +P++DG+ Sbjct: 2 QRIALIEDDAIVRQATSQWLQLAGFDVTAFEVGQDALSAVKQGDFHTIISDVRLPDIDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 EL R L P++ V+ ITG V + + + KPF Sbjct: 62 ELLGRFKSLVPEVPVILITGHGDVDMAVKALHQGAYDFIEKPF 104 >gi|109946812|ref|YP_664040.1| putative two-component regulator [Helicobacter acinonychis str. Sheeba] gi|109714033|emb|CAJ99041.1| putative two-component regulator [Helicobacter acinonychis str. Sheeba] Length = 213 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GY+VV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYKVVCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL + + V+FIT A + + L KPF L +L + R Sbjct: 61 SLELFKCIKNDFLISTPVIFITALQDNATLKCAFNLGASDYLKKPFDLDELEARIKRFF 119 >gi|83747379|ref|ZP_00944419.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551] gi|83725966|gb|EAP73104.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551] Length = 1000 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+AED R L K L GY V +GA+A ++ E F LLTD MP ++ Sbjct: 736 LGAHILVAEDHPINRELLAKQLRLLGYRVTLAEDGAAALQRLSETRFDALLTDCCMPRLN 795 Query: 61 GIELARRATELD------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G ELARR + + P L ++ IT + A + KP L L + Sbjct: 796 GFELARRIRQRERQTPGGPRLAILAITATTLAEEHARCRAVGMDDCVLKPTTLAALQEAL 855 Query: 115 NRLLTIK 121 +RL I+ Sbjct: 856 SRLWHIE 862 >gi|328954056|ref|YP_004371390.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328454380|gb|AEB10209.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 477 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R+ K L G+ V++ +G +A +R+ P L++ D+ MP M G+E Sbjct: 4 ILIVDDDPQLRQSFEKLLLDEGHAVLTAPDGEAALTLIRQAPPDLVIMDVRMPGMSGLEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +L+P L V+ +T F ++ + KPF + D++ + + L Sbjct: 64 FKTMHDLEPKLPVVIMTAFGTTETAIEATKLGAYDYILKPFEIPDILVIIGQAL 117 >gi|290769853|gb|ADD61625.1| putative protein [uncultured organism] Length = 225 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 63/114 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ +R + K L ++GYE+ C +G +A + + E + L+L D+ +P+++G+ Sbjct: 2 RLLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNLPKVNGMT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + D + V+ ++ + ++ + L+KPFHL +L V L Sbjct: 62 VLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSL 115 >gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 226 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + + +++ L G+ V +G +A +V EE + L++ DI++P+ DG++ Sbjct: 3 RILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLPKFDGMK 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ E D+ V+ +T + + + + ++KPF ++L + +L Sbjct: 63 VCRKIRE-TKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVL 116 >gi|168492264|ref|ZP_02716407.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|225860652|ref|YP_002742161.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|183573502|gb|EDT94030.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|225727089|gb|ACO22940.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] Length = 245 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 HLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|149203377|ref|ZP_01880347.1| putative two-component response regulator protein [Roseovarius sp. TM1035] gi|149143210|gb|EDM31249.1| putative two-component response regulator protein [Roseovarius sp. TM1035] Length = 458 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD D+R ++AL AG V ++ A D + ++L+DI MP MDG+ Sbjct: 9 RVLIVDDDADLRASTVQALEIAGAAVQDLSSAERALDFISFGFPGVVLSDIRMPGMDGLT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L R E+D ++ V+ +TG V L + + KPF + V R L+ + Sbjct: 69 LMSRIHEIDREIPVILMTGHGDVQLAVRAMREGAHDFIEKPFSASQMTELVARALSFRR 127 >gi|71282062|ref|YP_271129.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71147802|gb|AAZ28275.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 982 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 35/60 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED DD RR + + L G EV+ NG A E L+L DI MPEMDG+E Sbjct: 738 KILLAEDHDDNRRLIARLLTSLGLEVIVARNGKEAVKLCVEHQPDLVLLDIQMPEMDGVE 797 >gi|66044744|ref|YP_234585.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63255451|gb|AAY36547.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] Length = 228 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A D+ E + LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + + V+F+T V L KPF +L+ V LL Sbjct: 62 VIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLL 116 >gi|23011796|ref|ZP_00052052.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 770 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+A+DD R + + L G+ V +G + +E +L+L DI MP M G Sbjct: 549 RTVLVADDDQAHRALMREILEPLGFAVAEAPDGPACLASAKEREPALILLDIAMPGMSGW 608 Query: 63 ELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ARR E P M ++ ++AP + +++KPF ++D + + +LL Sbjct: 609 EVARRLREAGCPARIAMMSANVHEISPTRGADAPHD-DIIAKPFDMQDFLERITKLL 664 >gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 243 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ EDD D+ L L YEVV C NG ++ + + L+ D+++P +DG Sbjct: 4 QKRILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLMLPGVDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ RRA ++ ++ I+ ++ L+KPF + +LV V LL Sbjct: 64 LEICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALL 120 >gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 233 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 +IL+ +DD + + AL G+E++ C++G A +K+ E SL++ DI+MP+MDG+ Sbjct: 3 RILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMDGL 62 Query: 63 ELARRA 68 EL RR Sbjct: 63 ELCRRV 68 >gi|253995418|ref|YP_003047482.1| Fis family two component sigma54 specific transcriptional regulator [Methylotenera mobilis JLW8] gi|253982097|gb|ACT46955.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylotenera mobilis JLW8] Length = 457 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D+ M R L +L +AGY+ ++ +G A + + + ++TD+ MP MDG++L Sbjct: 8 ILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMPRMDGLQL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + D +L V+ +T + D+ + + +PF L +L + R L+ Sbjct: 68 LKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRALS 122 >gi|163736397|ref|ZP_02143816.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161390267|gb|EDQ14617.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 771 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEP---FSLLLTDIVMPEM 59 +LL ED+ +R F +AL GY V+ SA D +R E+P + +TD+VMP M Sbjct: 655 VLLVEDEAPVRAFASRALRMRGYTVLEAE---SAEDALRTLEDPGLTVDVFVTDVVMPGM 711 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG R A + PD +V+F++G+A A + N+ L KPF L L V+ L Sbjct: 712 DGPSWVREALKTRPDTRVVFVSGYAEGAFGEAEPSVPNSVFLPKPFSLNQLTETVHEQL 770 >gi|158522412|ref|YP_001530282.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511238|gb|ABW68205.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 449 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I++ +D+ + L + L K G+ V + +N A D + +L++D+ MP MD Sbjct: 1 MISHIVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 G+EL R PD++V+ ITG+A++ ++ L KPF +R+ V + L Sbjct: 61 GMELMTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHL 120 Query: 118 LTIK 121 L+ + Sbjct: 121 LSAR 124 >gi|104781165|ref|YP_607663.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95110152|emb|CAK14859.1| putative sensor histidine kinase/response regulator hybrid [Pseudomonas entomophila L48] Length = 726 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 13/120 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 ++LL ED+ +R+ + L + GYEV + A A + + P +LLTD VM M G Sbjct: 613 RVLLVEDEPLVRQATVLQLLELGYEVTEADGAAQAQVLLDDGLCP-DVLLTDHVMAGMTG 671 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 + AR+ E DL V+ ITG+A + AP+ +VL KPF +L + RLL Sbjct: 672 VRFARQVRERFADLPVLVITGYANL-------APRELHGFEVLRKPFRQEELARSLARLL 724 >gi|320160702|ref|YP_004173926.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994555|dbj|BAJ63326.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 381 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD R + L + GY++++ +NG A R E L+L D++MP++D Sbjct: 1 MAEKILIVDDDVQTLRLVGLMLERQGYKILAASNGTQAISMARTERPDLILLDVMMPDVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G +AR + +P+ + I F A A D A A L+KP H +L + + Sbjct: 61 GFSVARTLRK-EPETADIPILMFTAKAQVEDKIAGYEAGADDYLTKPIHPAELTAHMRAI 119 Query: 118 LT 119 L+ Sbjct: 120 LS 121 >gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 233 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 +IL+ +DD + + AL G+E++ C++G A +K+ E SL++ DI+MP+MDG+ Sbjct: 3 RILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMDGL 62 Query: 63 ELARRA 68 EL RR Sbjct: 63 ELCRRV 68 >gi|300769838|ref|ZP_07079718.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300763289|gb|EFK60105.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 234 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 8/126 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ ILL ED+ ++ +I+ L + GY+V+ +G A + VR + L++ DI++P+M+ Sbjct: 1 MNE-ILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQMN 59 Query: 61 GIELARRATELD-PDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+++ + + DL V+ +T + V L D+ A +SKPF L +L + Sbjct: 60 GLDVCKAIRDSGYTDLPVLMLTALGSPENVVLGLDNGAD---DYMSKPFKLIELKARIRT 116 Query: 117 LLTIKN 122 LL K+ Sbjct: 117 LLRRKS 122 >gi|182683587|ref|YP_001835334.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|182628921|gb|ACB89869.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] Length = 251 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 7 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 66 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 67 HLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 119 >gi|160903063|ref|YP_001568644.1| response regulator receiver protein [Petrotoga mobilis SJ95] gi|160360707|gb|ABX32321.1| response regulator receiver protein [Petrotoga mobilis SJ95] Length = 119 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 70/120 (58%), Gaps = 3/120 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 K+L+ +D++++R + + L +AGYEV + +N A + + ++ ++ TDI MP+++G Sbjct: 2 SKVLIVDDEENIRTLIKEELEEAGYEVTAASNAKDALETLENDKDIDIICTDIEMPDVNG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +ELA + P+ K++F+T ++ S A +A V+ K L ++ + + LL I+ Sbjct: 62 LELASEIRKRYPNKKIIFLTAYSHYKSEMASWAA-DAYVV-KSMDLTEIKDTIENLLKIQ 119 >gi|319642327|ref|ZP_07996985.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317386050|gb|EFV66971.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1343 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED+ ++R+F+ + L Y VV +G A +K+ EE ++TDI+MP MDGIE Sbjct: 1087 KVMVVEDNAELRQFICEIL-SGTYRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1145 Query: 64 LARRATE 70 L R E Sbjct: 1146 LIRHIKE 1152 >gi|303246970|ref|ZP_07333246.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] gi|302491677|gb|EFL51560.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] Length = 124 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +DD +R + L AGY V+ +G A + +P L++ DI MPEMDG+ Sbjct: 2 KTVLVVDDDPSIRALIRLYLEGAGYVVMEAADGKLAMQSLSGQPADLVVLDIFMPEMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLT 119 E+ + E KVM I+G +A V ++ +A VL KPF L+ +V L+ Sbjct: 62 EVLQVLRETCRTCKVMAISGGSAKVGMDLLGHATIFGADDVLQKPFSSETLLEKVEALIG 121 Query: 120 I 120 + Sbjct: 122 L 122 >gi|256828232|ref|YP_003156960.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256577408|gb|ACU88544.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 123 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +DD M L K L AGY VV ++G R + F L++TD++MP+ +GI Sbjct: 2 QNILVIDDDKLMCLALAKILISAGYNVVQASDGEEGLKLYRSQDFDLVITDLIMPDKEGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV------LSKPFHLRDLVNEVNR 116 ++ R EL + + I +A ++ K A++ LSKP DL++ V Sbjct: 62 QIIR---ELRKENSCIRIIAMSAGGRGGATDYLKWARLMGAKQCLSKPIKREDLLDAVQT 118 Query: 117 LLTI 120 +L + Sbjct: 119 VLAL 122 >gi|254000327|ref|YP_003052390.1| Fis family two component sigma54 specific transcriptional regulator [Methylovorus sp. SIP3-4] gi|253987006|gb|ACT51863.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylovorus sp. SIP3-4] Length = 457 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 63/118 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL +D+ +MRR L +L +AGY+ V NG A D +RE L+++D+ MP MDG+ Sbjct: 5 KRILALDDEPNMRRLLEISLRQAGYQPVVAENGREALDILREGGADLVVSDLHMPVMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L + + + V+ +T ++ + + + +PF L L + R L++ Sbjct: 65 QLLQAMQKEGLQVPVIIVTAQGEISTAVAAMKLGASDYILRPFDLETLEIAIERALSL 122 >gi|86160262|ref|YP_467047.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776773|gb|ABC83610.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 124 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R+ + + L + G++VVS +G A ++R L+L D++MP M+G E Sbjct: 3 RVLIVDDESDIRQAVAEVLAEEGHQVVSAGDGEEALAQIRAFHPELVLLDLMMPVMNGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R A + DPD+ + + +A+ A + KPF L L++ V R Sbjct: 63 F-RAAQKGDPDISAIPVVILSAMGRE---GAIDADGYIQKPFDLEMLLSAVRR 111 >gi|91977555|ref|YP_570214.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91684011|gb|ABE40313.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 847 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + L GY + + ++ E LL+TD+ +P M+ Sbjct: 728 ETVLVVDDEPTVRMLVADVLEDLGYTALEAADSVGGLRILQSEARIDLLVTDVGLPGGMN 787 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A E P+L V+FITGFA AL + VL+KPF + L + L+ Sbjct: 788 GRQLADAARESRPNLNVLFITGFAENALLNNGQLEPGMAVLTKPFAVDTLAARIRELI 845 >gi|330988802|gb|EGH86905.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 445 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPF---HLRDLVN 112 EL + P + V IT L+ NA K ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHG--NLDTAINALKAGAFDFVTKPVDLGRLRELVN 117 >gi|325279600|ref|YP_004252142.1| putative two component, sigma54 specific, transcriptional regulator [Odoribacter splanchnicus DSM 20712] gi|324311409|gb|ADY31962.1| putative two component, sigma54 specific, transcriptional regulator [Odoribacter splanchnicus DSM 20712] Length = 383 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L G+EVV NG V+ E ++ DI MP+M+GIE Sbjct: 3 KILVIDDERSIRNSMKDILSFEGHEVVLAENGMEGLVSVKTEKPEVVFCDIKMPKMEGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R E D+ V+ I+G + ++ + KP L + L+TIKN Sbjct: 63 VLERIKEFTSDVPVIMISGHGTIDTAIEAIKKGAYDFIEKPLDLNRI------LITIKN 115 >gi|317500294|ref|ZP_07958520.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium 8_1_57FAA] gi|316898302|gb|EFV20347.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium 8_1_57FAA] Length = 224 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + + ++L + Y V C +G +A + ++ F L++ D+ +P+ DG+ + Sbjct: 3 ILVVEDERILCETIARSLKRLAYSVDCCYDGITAMQMLADDNFDLVVLDLNLPDADGMTV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R + D D KV+ ++ + V+ D L+KPFHL +L + R LT++ Sbjct: 63 LRTLRKTDRDTKVLILSARSEVSDKVDGLDAGANDYLAKPFHLEELAARI-RSLTLRQ 119 >gi|313681572|ref|YP_004059310.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313154432|gb|ADR33110.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 217 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ +R + + L + GYEV +NG AYD + E F L L D+ +P M+G E Sbjct: 2 RVLLLEDEYMLRVSITEFLEELGYEVAGFSNGEKAYDAIYETRFDLYLLDVNVPGMNGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R + +F+T V + + KPF L +L Sbjct: 62 LLRALRKEGNKTPAIFLTSMVNVNDLQEGYKSGCCDYIRKPFDLTEL 108 >gi|313202285|ref|YP_004040943.1| Fis family two component sigma54 specific transcriptional regulator [Methylovorus sp. MP688] gi|312441601|gb|ADQ85707.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylovorus sp. MP688] Length = 457 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 63/118 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL +D+ +MRR L +L +AGY+ V NG A D +RE L+++D+ MP MDG+ Sbjct: 5 KRILALDDEPNMRRLLEISLRQAGYQPVVAENGREALDILREGGADLVVSDLHMPVMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L + + + V+ +T ++ + + + +PF L L + R L++ Sbjct: 65 QLLQAMQKEGLQVPVIIVTAQGEISTAVAAMKLGASDYILRPFDLETLEIAIERALSL 122 >gi|302339584|ref|YP_003804790.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301636769|gb|ADK82196.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 136 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD R ++ LGK G+ +NG A + F L+L D+ MPEM+G+E Sbjct: 10 ILIAEDDGISRLYIATVLGKRGFSTAEADNGLEAVHLATQREFDLILMDVNMPEMNGMEA 69 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNRLL 118 + RA E + + A A D A K + L+KPF R L++ + + Sbjct: 70 TQLIRAHEKKQGAIPVPVIALTAHAYAEDIKACKAVGMSDCLAKPFSERQLLSLLEKFF 128 >gi|224368229|ref|YP_002602392.1| transcriptional regulator (FIS family protein) [Desulfobacterium autotrophicum HRM2] gi|223690945|gb|ACN14228.1| transcriptional regulator (FIS family protein) [Desulfobacterium autotrophicum HRM2] Length = 450 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 55/121 (45%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L L G+EV NG A K+ E ++L DI MP MD Sbjct: 1 MYPAILIVDDEASIIESLEGILADDGFEVSHAFNGYEALKKIEAESPDIVLLDIWMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + + P+L V+ ITG + D+ L KP + ++ +N L Sbjct: 61 GIETLKEIKKNFPNLPVVMITGHGTIEAAVDATKSGAFDFLEKPLSIDKIIVTINNALNF 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|167625595|ref|YP_001675889.1| response regulator receiver protein [Shewanella halifaxensis HAW-EB4] gi|167355617|gb|ABZ78230.1| response regulator receiver protein [Shewanella halifaxensis HAW-EB4] Length = 212 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD ++R +++ L G+ V + + +A ++ F + L D++M M G+E Sbjct: 4 ILLAEDDVELRLNMVEILELEGFSVTAVESAEAAIRVSEKQHFDIALMDLLMAGMTGVEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P + V+ IT +A V D+ V++KPF +L+ + R L K Sbjct: 64 ISNLRQNQPLIAVIIITAYATVDTAVDAMKKGADSVMTKPFKSNELIVTIRRSLAEKQ 121 >gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +R L L G+ V+ +GA VR++ L++ D++MPEMDG Sbjct: 6 QRRILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDG 65 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR E P L + T + +S A L+KPF++ +L + LL Sbjct: 66 WEVCRRLREFSQMPVLMLTARTQSKDIVTGLESGA---DDYLTKPFNMDELTARIRALL 121 >gi|28869898|ref|NP_792517.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213967063|ref|ZP_03395213.1| response regulator [Pseudomonas syringae pv. tomato T1] gi|301385248|ref|ZP_07233666.1| response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063303|ref|ZP_07254844.1| response regulator [Pseudomonas syringae pv. tomato K40] gi|302130189|ref|ZP_07256179.1| response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853143|gb|AAO56212.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213928385|gb|EEB61930.1| response regulator [Pseudomonas syringae pv. tomato T1] gi|331014371|gb|EGH94427.1| response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 119 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ EDD +R ++ L + Y V+ + +A V + LL+TD +P+M Sbjct: 6 RTILVVEDDAIVRMLIVDVLEELEYTVLEAEDATTALAIVTDNANHIDLLMTDQGLPDMK 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA++ EL P+L V+F +G++ + + P + KPF + L ++V +L Sbjct: 66 GTALAKKVIELRPELPVLFASGYSE-----NIDVPPGMYAIGKPFSIDQLRDKVKSIL 118 >gi|332878122|ref|ZP_08445851.1| Sigma-54 interaction domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683860|gb|EGJ56728.1| Sigma-54 interaction domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 465 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL EDD + L + L + GY+V+ C + A +K ++ TD+ +P+ D Sbjct: 1 MKTPILLVEDDVVFSKMLSRFLERNGYDVIGCYSLEEA-EKNLTPAIKMIFTDLRLPDGD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 GI ++ ++ P+L V+ +T +A V+ ++ +SKPF D++N Sbjct: 60 GINFLKQVKDIFPNLPVVVMTSYAEVSTAVEAMKLGAFDYISKPFQQEDVLN 111 >gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 501 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L GY+V + NG A + +R EP +L+L D+ MP M +E+ Sbjct: 7 ILVVDDEKVIRDGCALILQPEGYQVATAANGQEALEILRTEPINLVLCDLKMPVMGALEV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A P++ ++ ITG VA + ++KPF + L V R+L Sbjct: 67 LEVAGTHYPEVPIIIITGHGTVANAVECMQKGAYDFVTKPFRVDHLTLVVKRVL 120 >gi|217034442|ref|ZP_03439855.1| hypothetical protein HP9810_11g24 [Helicobacter pylori 98-10] gi|216943112|gb|EEC22586.1| hypothetical protein HP9810_11g24 [Helicobacter pylori 98-10] Length = 213 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVSCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARRATE----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +EL + P V+FIT A ++ + L KPF L +L + R Sbjct: 61 SLELFKCIKNDFLIFTP---VIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 Query: 117 LL 118 Sbjct: 118 FF 119 >gi|93005532|ref|YP_579969.1| two component heavy metal response transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92393210|gb|ABE74485.1| two component heavy metal response transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 238 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ + ++ K L +AG+ V G Y + E FS++L D+++P++ G E Sbjct: 2 KVLLVEDEQKLGEYIKKGLTEAGFIVDHYMTGLDGYHALMTEEFSVVLMDVMLPDVSGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L +R + V+F+T A + S+ K ++ L+KPF +L+ + LL Sbjct: 62 LIQRYRAAEKHTPVLFLT-----AKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLL 116 >gi|332528692|ref|ZP_08404669.1| pas/pac sensor hybrid histidine kinase [Hylemonella gracilis ATCC 19624] gi|332041758|gb|EGI78107.1| pas/pac sensor hybrid histidine kinase [Hylemonella gracilis ATCC 19624] Length = 863 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +++ +D+ + L +L GYE V + A + + F L+LTD +PE+ Sbjct: 715 ETLMVVDDEPALVELLEDSLAALGYEAVGYTSSTKALQAFQADADRFDLVLTDQQLPELS 774 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL R L P L V+ +TG L P + VL KP RD+ + R+L Sbjct: 775 GAELIARLRVLRPLLPVVLMTGHGGAGLEPRIQSVNIDAVLHKPVSARDIAVCIARVL 832 >gi|315224461|ref|ZP_07866288.1| response regulator [Capnocytophaga ochracea F0287] gi|314945482|gb|EFS97504.1| response regulator [Capnocytophaga ochracea F0287] Length = 251 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 58/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ ILL EDD + L L +G++V NG ++K ++E + + + D++MP DG Sbjct: 16 NKHILLVEDDPNFGTVLKDYLVMSGFDVTLAKNGMEGFEKFKKETYDMCILDVMMPYKDG 75 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 LA+ E D + ++F+T L+KPF L+ ++ +L K Sbjct: 76 FTLAKEIREKDEKIPIIFLTARTMREDVIKGYRSGADDYLNKPFDSEILLMKIRSILQRK 135 Query: 122 N 122 N Sbjct: 136 N 136 >gi|308272870|emb|CBX29474.1| hypothetical protein N47_J04550 [uncultured Desulfobacterium sp.] Length = 137 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 61/112 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++D R L L + ++ +G A + ++++ F + + DI MP MDGIE Sbjct: 5 RLLLVDDEEDFRATLAARLKRRNLDISDVASGEDALELLKQKSFDIAIVDIKMPGMDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R ++DP ++V+ +TG A++ + + KP ++ L++++ Sbjct: 65 TLRHIKKIDPLMEVILLTGHASIEAGIEGIKSGAYDYVIKPCNIDALLDKIE 116 >gi|309792001|ref|ZP_07686479.1| CheA signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225995|gb|EFO79745.1| CheA signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 757 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%) Query: 3 QKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q LL DD R +I++ L AGY V + +GA A DK+R + + L+++D+ MP +DG Sbjct: 634 QAQLLVCDDSFTTREMIRSILQSAGYRVTAAVDGADALDKLRSQAYDLVVSDVEMPRVDG 693 Query: 62 IELARRA-TELD-PDLKVMFITGFAA 85 +L R EL PDL V+ IT A+ Sbjct: 694 FQLTTRIRNELALPDLPVVLITSLAS 719 >gi|218778925|ref|YP_002430243.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760309|gb|ACL02775.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 832 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++KIL +D+ + + L + GY V + +A + + +P F L++TD+ MP M Sbjct: 711 DEKILFVDDEGPVALMGKQMLERLGYTVTVETSSIAALEIFKAQPHNFDLVVTDMSMPLM 770 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G AR+ E P++ ++ TGF+ V ++ A ++ + KP + ++ N V ++L Sbjct: 771 TGDVFARKILETRPNMPIVLCTGFSEVVTQENAQAMGISEYIMKPMVMSEIANTVRKVL 829 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 47/83 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D++ +R+ L GYEV+S NG + +E+ L+L D+ MPE+DG+E+ Sbjct: 12 ILTIDDEEAIRQSFAAFLEDFGYEVLSAPNGKVGLEIFKEKKPHLILVDLRMPEVDGLEV 71 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 T+ P+ ++ ++G +A Sbjct: 72 LSSVTQASPETPIIVVSGTGVIA 94 >gi|116620984|ref|YP_823140.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224146|gb|ABJ82855.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1155 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L +D++ +R + K L + G+ V+S +G +A D ++ P LLL D+ +P Sbjct: 1037 LLFVDDEESLRESVSKLLSRRGFSVLSAGDGCAAVDLLQRHPEKIDLLLLDMTLPGTPSR 1096 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 E+ A + P +K++ + ++ + ++P + KPF L DLV Sbjct: 1097 EIIAEAQRVRPSIKIILTSAYSREMVAHSLDSPAVRGFIRKPFQLADLV 1145 >gi|323698462|ref|ZP_08110374.1| response regulator receiver protein [Desulfovibrio sp. ND132] gi|323458394|gb|EGB14259.1| response regulator receiver protein [Desulfovibrio desulfuricans ND132] Length = 128 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 KIL+AEDD ++ +K + + G+ +G AY+ + F LLLTDI+MPEMDG Sbjct: 3 KILIAEDDRISQKLAVKIVEELGHTAFVSPHGRHAYESLMANNDFELLLTDIMMPEMDGQ 62 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 +L + R + DL ++ ++ A V +N SN K L+KP +L + + R L Sbjct: 63 QLIKTLRGDQQFDDLPIIIMS--AVVGINDISNLLKLGATLFLAKPLEREELQDYITRCL 120 >gi|257054664|ref|YP_003132496.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584536|gb|ACU95669.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 230 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 45/77 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GYEV +G SA D ++ LL+ D+ +P MDG+E+ Sbjct: 2 VLLAEDDPAIAEPLSRALRREGYEVTVVADGPSALDTAAQDRIDLLVLDLGLPGMDGLEV 61 Query: 65 ARRATELDPDLKVMFIT 81 RR D L V+ +T Sbjct: 62 CRRLRATDRTLPVLMLT 78 >gi|224535281|ref|ZP_03675820.1| hypothetical protein BACCELL_00142 [Bacteroides cellulosilyticus DSM 14838] gi|224523089|gb|EEF92194.1| hypothetical protein BACCELL_00142 [Bacteroides cellulosilyticus DSM 14838] Length = 1328 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +LL ED++D+ +++ L + Y ++ NG A + +E +L+++DI+MPEMDG Sbjct: 1076 SSSLLLVEDNEDLLSSMVRLL-QGRYHILQARNGVEALAVLEKEEVNLIVSDIMMPEMDG 1134 Query: 62 IELARRATE 70 IEL RR E Sbjct: 1135 IELCRRIKE 1143 >gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185] gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185] Length = 917 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 2/108 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+D L+K + K Y++ NG A +KVR+E F ++L D+ MP M G+E Sbjct: 805 QILIAEDNDS-NYSLVKHILKE-YQITRVVNGVEAVEKVRDEEFDIVLMDMKMPIMGGLE 862 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 R+ EL+P + ++ +T A A + L+KP +L+ Sbjct: 863 ATRKIRELNPIIPIIALTANAFDADRVSAMEAGCNAFLTKPLKKEELL 910 >gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 669 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 6/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++ILL ED++ + + L + GYE +G A +K++E F L+L DI MPE++G Sbjct: 549 NKRILLVEDNEINIKITCEMLNRLGYEYEYVYDGKQALEKLKENTFDLILMDIQMPELNG 608 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 + R R E+ V I A ++N D + +SKPF + L N + R Sbjct: 609 YDTTRIIREKEIKTKEHVNII-AMTAYSMNGDRERCIEVGMDDYISKPFDMNKLKNVILR 667 Query: 117 LL 118 + Sbjct: 668 FI 669 >gi|307243531|ref|ZP_07525679.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306493087|gb|EFM65092.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 191 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ ED+ +R F+ L + GY+V+ G+ A +K+ EP ++ L DI++P+M G+ Sbjct: 3 KILILEDEIGIRSFVSINLKREGYDVIEAGTGSEAIEKLNSEPNITIALLDIMLPDMSGV 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ R E ++ ++ +T A + + KPF +++L+ V+ L+ Sbjct: 63 DVCRYIREKYENMGIIMLTAKAQEDDKIEGFVAGADDYMIKPFSIKELLFRVSALI 118 >gi|237801865|ref|ZP_04590326.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024723|gb|EGI04779.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 446 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A++ + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQQGYPQVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVN 117 >gi|218437977|ref|YP_002376306.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218170705|gb|ACK69438.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 353 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L K L + GYEV +G A V +P L+L D+ MP +DG E+ Sbjct: 12 ILIVDDIPENLEILFKTLQEQGYEVRRVLSGQQALMVVEADPPDLILLDVKMPHIDGYEV 71 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R +A E + V+F++ V + ++KPFHL ++++ + L I+ Sbjct: 72 CRHLKAQEKTAQIPVIFLSALHEVFDKVKAFRVGGVDYITKPFHLEEVLSRIETQLLIQ 130 >gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630] gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196] gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291] gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium difficile] gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196] gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291] Length = 230 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 44/70 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD Sbjct: 1 MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GIELARRATE 70 GIE+ R+ E Sbjct: 61 GIEVCRKVRE 70 >gi|33592687|ref|NP_880331.1| nitrogen regulation protein NR(I) [Bordetella pertussis Tohama I] gi|33572333|emb|CAE41887.1| nitrogen regulation protein NR(I) [Bordetella pertussis Tohama I] gi|332382102|gb|AEE66949.1| nitrogen regulation protein [Bordetella pertussis CS] Length = 495 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 59/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + + + +DD +R L KAL +AG S + A + + S+L++DI MP DG+ Sbjct: 2 KPVWIVDDDQAIRWVLEKALARAGIATRSFSRAADVLQALAADVPSVLVSDIRMPGGDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R+ E +P L V+ +T FA + + L+KPF + + V + R + Sbjct: 62 ELLRQIKERNPGLPVIVMTAFADLDSTVSAFQGGAFDYLAKPFDVNEAVALIQRAM 117 >gi|330891578|gb|EGH24239.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. mori str. 301020] Length = 445 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPF---HLRDLVN 112 EL + P + V IT L+ NA K ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHG--NLDTAINALKAGAFDFVTKPVDLGRLRELVN 117 >gi|329928806|ref|ZP_08282645.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937449|gb|EGG33870.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 86 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 7/85 (8%) Query: 4 KILLAEDD----DDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+LLA+D+ + M+ F+ G +V+ S NNG +A + + E +L+TD+ MP Sbjct: 3 KVLLADDEILDLEGMKSFI--PWEDLGMKVIDSVNNGFAACEVLEREKVDILVTDVRMPN 60 Query: 59 MDGIELARRATELDPDLKVMFITGF 83 M G+ELA+RA +L +L+++F++G+ Sbjct: 61 MTGLELAQRALKLQEELRIIFVSGY 85 >gi|323952014|gb|EGB47888.1| response regulator receiver domain-containing protein [Escherichia coli H252] Length = 165 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|304391820|ref|ZP_07373762.1| sensor kinase [Ahrensia sp. R2A130] gi|303296049|gb|EFL90407.1| sensor kinase [Ahrensia sp. R2A130] Length = 906 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 I+ ED+D +R + L GY V NG A + + E + +L+++D+VMPEMDG Sbjct: 777 IVFVEDEDSVRAVGCRTLQARGYTVHEAENGVEALELLEEYGDEVTLVVSDVVMPEMDGP 836 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L +L + +F +G+A A + ++ K + KP+ L+ L V L Sbjct: 837 TLLSEVRKLGNSVPFIFASGYAEDAFEKNLPESEHGKFGFIPKPYSLKQLATAVKEQL 894 >gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 267 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 45 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 104 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 105 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 159 >gi|292669769|ref|ZP_06603195.1| chemotaxis protein CheY [Selenomonas noxia ATCC 43541] gi|292648566|gb|EFF66538.1| chemotaxis protein CheY [Selenomonas noxia ATCC 43541] Length = 120 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++L+ +D MR + L K GYE+V NG A +K +E L+ DI MPEM Sbjct: 1 MATRVLIVDDAAFMRMMVKDILSKNGYEIVGEAENGMKALEKYQELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGI + ++DP KV+ + A+ ++ + KPF Sbjct: 61 DGITAVKEIKKVDPAAKVVMCSAMGQQAMVIEAIQAGARDFIVKPFQ 107 >gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 1236 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+D ++ + + L GY ++G A + + + LLLTD+ MPEMDG EL Sbjct: 981 ILVAEDNDINQKVIRQQLNLLGYAADIASDGKEALKRWQTGDYDLLLTDLHMPEMDGFEL 1040 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 R ++ + K + I A AL + + LSKP L DL Sbjct: 1041 TREIRTIEANQKRIPIVALTANALKGEKERCLQTGMDDYLSKPVQLEDL 1089 >gi|220913397|ref|YP_002488706.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219860275|gb|ACL40617.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 264 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 7/116 (6%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ EDD D+R L L +AG+EV + N+G + + VR + S++ DI +P++DG E+ Sbjct: 9 VVIEDDADVRNLLEGVLSQAGFEVHTANDGRAGVEVVRSKQASVVTLDIGLPDIDGFEVL 68 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR + V+ +TG PD + NA ++KPF R+L V+ ++ Sbjct: 69 RRIRHFS-NAYVVMLTGRTE---EPDLLSALNAGADDYIAKPFRPRELRARVSAMM 120 >gi|89899377|ref|YP_521848.1| response regulator receiver domain-containing protein [Rhodoferax ferrireducens T118] gi|89344114|gb|ABD68317.1| response regulator receiver domain protein [Rhodoferax ferrireducens T118] Length = 120 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D MR+ + L AGY+VV +G AY+K + + F L+LTD MP +DG+ L Sbjct: 4 ILAVDDSPSMRKMVSFTLTGAGYQVVEAVDGVDAYEKAQAQSFDLVLTDQNMPRLDGLGL 63 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ + P K ++ +T ++ + A L KPF L+ + +++ Sbjct: 64 TRKLRD-HPQFKTVPILVLTTESSDLMKQAGRAAGATGWLVKPFDPARLLEVIKKVI 119 >gi|71734676|ref|YP_273028.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555229|gb|AAZ34440.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 445 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPF---HLRDLVN 112 EL + P + V IT L+ NA K ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHG--NLDTAINALKAGAFDFVTKPVDLGRLRELVN 117 >gi|73748979|ref|YP_308218.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669746|ref|YP_001214564.1| response regulator receiver protein [Dehalococcoides sp. BAV1] gi|289432975|ref|YP_003462848.1| response regulator receiver protein [Dehalococcoides sp. GT] gi|73660695|emb|CAI83302.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|146270694|gb|ABQ17686.1| response regulator receiver protein [Dehalococcoides sp. BAV1] gi|288946695|gb|ADC74392.1| response regulator receiver protein [Dehalococcoides sp. GT] Length = 180 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 12/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R + L + G+ V NG A ++++ + F L+ D+ MP ++G EL Sbjct: 61 VLVIDDEITVRSLFKETLEEQGHVVSMAKNGEEALEQLQSKDFDLVFLDLKMPGLNGAEL 120 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN------APKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + P L V ITG+ PDS+ A V++KPF D++N L Sbjct: 121 YQKIRAIKPKLPVTIITGY------PDSDTMAKVLAQGPFGVMNKPFGEMDIINATKNFL 174 Query: 119 TI 120 I Sbjct: 175 RI 176 >gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 229 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++++ +F+ L GYE + N+G S D E + ++L D+++PE++G+E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR E+ ++ +T +V L KPF + +L+ + LL Sbjct: 63 VARRLREV-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLL 116 >gi|325276623|ref|ZP_08142359.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324098241|gb|EGB96351.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 230 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LLAEDD +R+ L + G++V++C NG+ A +R+ F L+L DI++P +D Sbjct: 1 MPTSLLLAEDDPRLRQDLERHFLNRGFQVLACANGSQALSAIRQSRFDLVLLDIMLPGID 60 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R + P VM ++ A L KPF L +L V+ LL Sbjct: 61 GLSLLDELRHQQAVP---VMLMSALGAEQDRIRGFTRGADDYLPKPFSLAELDARVDALL 117 >gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEM Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMY 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|290352159|dbj|BAI78790.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ E + ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD Sbjct: 1 MTKKILIIEYEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEV 114 G E+ RR + + +M +T ++ ++ + + A + KPF + +L+ + Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSI-MDVVAGLDRGADDYIVKPFAIEELLARI 113 >gi|290473292|ref|YP_003466158.1| response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) [Xenorhabdus bovienii SS-2004] gi|289172591|emb|CBJ79360.1| response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) [Xenorhabdus bovienii SS-2004] Length = 476 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 56/116 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+ + +DD +R L +AL AG E VS N S + + +LL+DI MP +DG+ Sbjct: 5 KVWIVDDDSSIRWVLERALSGAGLECVSFENADSVLTALSQNCPEVLLSDIRMPGLDGLN 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + + P L V+ +T + + + L KPF + + V V R L+ Sbjct: 65 LLNQIKQSHPQLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDETVTLVERALS 120 >gi|312114267|ref|YP_004011863.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311219396|gb|ADP70764.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 836 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++ R+ + L G+ V + +A + + F L+ TD +MP +G+EL Sbjct: 660 ILLVDDEELARKSAAEMLADLGHSVTQAGSAETAIELLGAHQFDLIATDYLMPRRNGLEL 719 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 A + P L + ITGFA + P A + VLSKPF +L Sbjct: 720 VEDARSIRPGLAAVIITGFANI---PKERA-ADLVVLSKPFRQTEL 761 >gi|238753119|ref|ZP_04614568.1| hypothetical protein yrohd0001_39490 [Yersinia rohdei ATCC 43380] gi|238708669|gb|EEQ00938.1| hypothetical protein yrohd0001_39490 [Yersinia rohdei ATCC 43380] Length = 1195 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+A+D + R L + L GY + +G A + V++ + LL+TDI MP MDG Sbjct: 958 NLKILIADDHPNNRLLLRRQLDNLGYHIDEAIDGIQALELVKQNKYDLLITDINMPNMDG 1017 Query: 62 IELARRATELDPDLKVMFITGFA---------AVALNPDSNAPKNAKVLSKPFHLRDLVN 112 I L R D ++ + +T A AV +N P N + L L + Sbjct: 1018 ITLTRHIRGFDENIVIWGLTANAQEEERERCLAVGMNLCLFKPVNLQQLESSLRLVNTQQ 1077 Query: 113 EVNRL 117 +RL Sbjct: 1078 PASRL 1082 >gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 229 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++++ +F+ L GYE + N+G S D E + ++L D+++PE++G+E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR E+ ++ +T +V L KPF + +L+ + LL Sbjct: 63 VARRLREV-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLL 116 >gi|224537465|ref|ZP_03678004.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM 14838] gi|224520903|gb|EEF90008.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM 14838] Length = 1390 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR + I+ L Y + +G A + V++ L+++D++MP MDG+ Sbjct: 1139 ETILIVEDNKDMRSY-IRTLLVGDYRLFEAGDGQEALEIVQKHTVDLIVSDLMMPVMDGM 1197 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL+RR E +L I AL D ++ ++ L KPF L + + Sbjct: 1198 ELSRRIKE---NLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNI 1254 Query: 118 LTIK 121 L+++ Sbjct: 1255 LSLR 1258 >gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] Length = 224 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ D+ + + + L K Y V SC +G A D + P+ ++ DI+MP++DG+ Sbjct: 2 RILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIMMPKLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ + + V+ +T +V L KPF +L+ V L+ Sbjct: 62 VLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLV 116 >gi|182677184|ref|YP_001831330.1| two component, sigma54 specific, Fis family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633067|gb|ACB93841.1| two component, sigma54 specific, transcriptional regulator, Fis family [Beijerinckia indica subsp. indica ATCC 9039] Length = 446 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 57/100 (57%) Query: 19 IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 ++AL AG +VV+ ++ +A D++ E ++++DI MP +DG++ + ++DPDL V+ Sbjct: 17 VQALVLAGLDVVTYHSAMAALDELNSEFTGVVVSDIRMPGIDGLQFFKYLKKIDPDLPVI 76 Query: 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ITG +++ D+ +SKP+ L+ + L Sbjct: 77 LITGHGDISMAVDALRDGVYDFISKPYTFDRLLGSIRHAL 116 >gi|149920340|ref|ZP_01908810.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149818782|gb|EDM78224.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 920 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +L+ ED + + R ++L GY V+ ++G A ++VR P LLL+DI+MP + Sbjct: 784 ETVLVLEDSEVVGRVTARSLENFGYTVLLASDGRQALERVRAYPGTIDLLLSDILMPGLS 843 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + A +L P+L V+++TG +A++L KPF +L V L Sbjct: 844 GPDAAAELRKLRPELAVLYMTGHIDDERVSIEALGADAEILPKPFRQAELAARVRAAL 901 >gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ +DD + + + L AGY+V +G SA V EP L++ D+++P +D Sbjct: 1 MTQRVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RR + ++ +T A LSKPF R+LV V +L Sbjct: 61 GLEVCRRLRTKPGGVPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVL 118 >gi|45658933|ref|YP_003019.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602178|gb|AAS71656.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 507 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 12/118 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++R L + + K GY+V+S + SA + +R + ++++DIVM GIE+ Sbjct: 12 VLVIDDEFEIRIVLERVISKEGYQVLSAKDSDSALEIIRNQKVDVVISDIVMNGKSGIEV 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVNR 116 + +++ ++ V+ +TG NPD N+ + A +SKP R+++ + R Sbjct: 72 VKEIRKINENIPVILMTG------NPDLNSAEEAVRNRAFDYISKPIRRRNILEILER 123 >gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX] gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX] Length = 222 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GY V +G D+ R LL+ D+ +PE+DG+E+ Sbjct: 4 VLLAEDDASISEPLARALRREGYSVDVTVDGMETLDRARSGDIDLLVLDLGLPELDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 64 ARRLRSEGHGTPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces bingchenggensis BCW-1] Length = 249 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ EDD +R L ALG +GY+V S G A V LLL D+++P++D Sbjct: 9 LTHRILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVMLPDLD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ R + V+F+T V + KPF + +++ + +L Sbjct: 69 GFEVTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAIL 126 >gi|291572094|dbj|BAI94366.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 378 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L + L K GY+VV +NG +K +E +L++ D +MP + GIE Sbjct: 3 KILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTGIE 62 Query: 64 LARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R+ + P+L + +T AV LSKP + +L V Sbjct: 63 VCRQVKAM-PELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARV 115 >gi|268678739|ref|YP_003303170.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268616770|gb|ACZ11135.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 222 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LL EDD ++ + + L G+EV +G A +K+ E+ F L L D+ +P + Sbjct: 1 MKNRLLLLEDDTNLSETVCEFLESKGFEVTPVYDGEEAEEKIYEKHFDLFLLDVNVPTQN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL ++ +F+T A+ L KPF L++L+ ++ LL Sbjct: 61 GFELLKKCRLQGNTTPAIFLTSLNAIEDLEHGYESGCDDYLRKPFALKELLFRIDTLL 118 >gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5] gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD+ + L + L GY+V++ +NGA + E +++ D++MP++D Sbjct: 1 MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRR 120 Query: 121 KN 122 K Sbjct: 121 KT 122 >gi|167644579|ref|YP_001682242.1| response regulator receiver protein [Caulobacter sp. K31] gi|167347009|gb|ABZ69744.1| response regulator receiver protein [Caulobacter sp. K31] Length = 121 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D +R+ + AL GY V NGA +K F L++TD+ MP MDG+ + Sbjct: 4 ILTVDDSASIRQAIKIALSGEGYSVTEAVNGAEGLEKGSAGGFDLIVTDLNMPVMDGLAM 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R R + ++F+T + + + A L+KPF LV V ++L Sbjct: 64 IRELRQRPAGAGVPILFLTTESDAEIKAQAKAAGATGWLTKPFDPEQLVRVVKKVL 119 >gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans UA159] gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans NN2025] gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus mutans UA159] gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans] gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans NN2025] Length = 230 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ + +F+ L GYEV +G S ++ E+ F L+L D+++PEMD Sbjct: 1 MAKDILIIEDEKKLAKFVSLELQHEGYEVEVTYDGRSGLERALEKDFDLILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEV 114 G E+ RR +L+ V+ IT ++ ++ + + A + KPF + +L+ V Sbjct: 61 GYEVIRR-LQLEKTTYVIIITARDSI-MDIVTGLDRGADGYIVKPFAIEELLARV 113 >gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 229 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD+ + L + L GYEV++ NGA +K+ +++ D++MP++D Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120 Query: 121 KN 122 K Sbjct: 121 KT 122 >gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201] gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201] gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 245 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+ Sbjct: 26 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMN 85 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G EL R +L+ + V+ +T AL+ D N + ++KPF ++ L+ V Sbjct: 86 GHELLREFRKLN-NTPVLMMT-----ALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVE 139 Query: 116 RLL 118 LL Sbjct: 140 ALL 142 >gi|170742879|ref|YP_001771534.1| two component, sigma54 specific, Fis family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197153|gb|ACA19100.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacterium sp. 4-46] Length = 446 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +I+ +D++D+RR ++L G V + A + +P +++TD+ +P +DG Sbjct: 5 SDRIVFVDDEEDVRRANRQSLELDGLAVEAFPAAEPALRAILADPPGVVVTDVRLPGLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L R E DPDL V+ ITG + + + L+KP+ L+ V R L Sbjct: 65 LGLFRAVAEADPDLPVILITGHGDITMAVRAMREGAYDFLAKPYPAEQLIGSVRRAL 121 >gi|157736715|ref|YP_001489398.1| two-component response regulator [Arcobacter butzleri RM4018] gi|157698569|gb|ABV66729.1| two-component response regulator [Arcobacter butzleri RM4018] Length = 135 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 4 KILLAEDD----DDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 K+L EDD +++ FL K LG E+ NG A + + +++TDI MP+M Sbjct: 13 KLLYVEDDLMTQEEVSFFLQKYLG----ELYLAKNGEEAINIFLKNKIDMIITDIQMPKM 68 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G+E+++R E++P + ++ T + + K +SKPF+L L+ + + L+ Sbjct: 69 NGLEMSKRILEINPKIPIIITTAYNDCEYLNQAMELGIDKYISKPFNLEALLTMIEKSLS 128 Query: 120 IKN 122 +++ Sbjct: 129 LEH 131 >gi|325288787|ref|YP_004264968.1| response regulator receiver protein [Syntrophobotulus glycolicus DSM 8271] gi|324964188|gb|ADY54967.1| response regulator receiver protein [Syntrophobotulus glycolicus DSM 8271] Length = 120 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ K+LL +D MR L L GY++V NGA A +K E +++ DI MPEM Sbjct: 1 MSHKVLLVDDAAFMRMMLKDILSNNGYQIVGEAENGAVAIEKYAELKPDIVIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG++ + DP KV+ + + ++ + KPF ++ V + L Sbjct: 61 DGLQAIKEIKAKDPQAKVIMCSAMGQQGMVIEAIQSGAKDFVVKPFQPDRVLEAVGKAL 119 >gi|320326245|gb|EFW82299.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. glycinea str. B076] gi|320330669|gb|EFW86646.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. glycinea str. race 4] gi|330881344|gb|EGH15493.1| type IV fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. glycinea str. race 4] Length = 445 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + N A A+D + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPF---HLRDLVN 112 EL + P + V IT L+ NA K ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPHVPVAMITAHG--NLDTAINALKAGAFDFVTKPVDLGRLRELVN 117 >gi|320354105|ref|YP_004195444.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122607|gb|ADW18153.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 445 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 57/103 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +RR L K L + E+++ +GA A +R F +++ D+ +P++ +EL Sbjct: 8 ILVVDDEESIRRLLQKELANSRREILTAADGAEALAMIRNHWFDVIIMDLWLPDVSDLEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 + E P ++V+ ITG V + ++ + KPF+L Sbjct: 68 LIKIRESIPHIEVIMITGHGDVDIAVEAMKLGACDFIRKPFNL 110 >gi|307825418|ref|ZP_07655637.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307733593|gb|EFO04451.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 224 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD + L L +GY V S G A ++ + F L++ D+ +P+MDG+EL Sbjct: 3 ILLIEDDAVLADGLTHTLSGSGYSVTSATTGGYADQLLQAQGFDLIVLDLGLPDMDGLEL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 R+ L ++ +T A +N N + ++KPF LR+L V+ L+ Sbjct: 63 LRKLRSRKIPLPILILT--ARDGVNDRINGIEQGADDYMTKPFELRELEARVHALI 116 >gi|288556153|ref|YP_003428088.1| chemotaxis protein CheV [Bacillus pseudofirmus OF4] gi|288547313|gb|ADC51196.1| Chemotaxis protein CheV (CheW-REC domains) [Bacillus pseudofirmus OF4] Length = 302 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 12/96 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVR----------EEPFSLL 50 ++KI++AED +R+ L + L +AGYE V+ NG A D + EE L+ Sbjct: 174 HKKIVVAEDSAMLRKLLHQTLAEAGYEQVTFFENGKEALDYLEYLQTSDEHTVEEEVQLV 233 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 +TD+ MP+MDG+ L RR E D D K + + F+++ Sbjct: 234 ITDLEMPKMDGLHLTRRIKE-DDDFKRIPVIIFSSL 268 >gi|262409757|ref|ZP_06086294.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262352374|gb|EEZ01477.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1321 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L + L K Y V +C+NG A RE L+L+D++MPEM G Sbjct: 1069 QRILIVEDNDDLRTYL-EGLLKEEYLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL + D++ I AL + + + + ++KPF + L + + Sbjct: 1128 EL---CASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNI 1184 Query: 118 L 118 L Sbjct: 1185 L 1185 >gi|253576274|ref|ZP_04853605.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844401|gb|EES72418.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 224 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD + +R + L + GY NG A + + E F L++ D++MPEMDG +L Sbjct: 4 ILVVEDDVNTQRLICAVLQRGGYNSHVAGNGIEALNLMEERHFDLVVLDLMMPEMDGYQL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ ++ +T + + ++KPF ++L+ + LL Sbjct: 64 CEDLRSAGDNIPILMVTAAHDIKFKHNGFLVGTDDYMTKPFDEQELLFRIKALL 117 >gi|237800716|ref|ZP_04589177.1| response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023575|gb|EGI03632.1| response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] Length = 119 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 7/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 IL+ EDD +R ++ L + Y+V+ N SA + LL+TD +P+M Sbjct: 5 GSTILVVEDDAIVRMLIVDVLEELNYKVLVAENAESALTIATLENNHIDLLMTDQGLPDM 64 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G LA++ EL P L V+F +G++ + + P + KPF + L ++V +L Sbjct: 65 KGTVLAKKIVELRPALPVLFASGYSE-----NIDVPPGMHSIGKPFSIDQLRDKVKSILV 119 >gi|237717798|ref|ZP_04548279.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452897|gb|EEO58688.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1321 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L + L K Y V +C+NG A RE L+L+D++MPEM G Sbjct: 1069 QRILIVEDNDDLRTYL-EGLLKEEYLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL + D++ I AL + + + + ++KPF + L + + Sbjct: 1128 EL---CASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNI 1184 Query: 118 L 118 L Sbjct: 1185 L 1185 >gi|163867364|ref|YP_001608558.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476] gi|161017005|emb|CAK00563.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476] Length = 240 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MD Sbjct: 7 ITQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + DL V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLLTIKN 122 V +L N Sbjct: 119 VRAILRRSN 127 >gi|153006208|ref|YP_001380533.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152029781|gb|ABS27549.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 142 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 8/115 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 +L+ EDD D+R L +ALG GY+V+ NG D +RE P +LL D++MP M G Sbjct: 26 VLVIEDDPDIREALAEALGYEGYDVLLAENGQEGLDVLREHSRPHVILL-DLLMPVMSGW 84 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ DP L + + V+ +P +A + + L KPF + DL+ V L Sbjct: 85 QF-RQEQLADPALAGIPVV---VVSASPPGDA-RPDRYLPKPFSIDDLLCAVAEL 134 >gi|118589889|ref|ZP_01547293.1| two-component response regulator [Stappia aggregata IAM 12614] gi|118437386|gb|EAV44023.1| two-component response regulator [Stappia aggregata IAM 12614] Length = 479 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 62/114 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY V +N ++ + V L++TD+VMP+ + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYTVRLTSNASTLWRWVSSGDGDLVITDVVMPDENIFDV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++L + V R L Sbjct: 66 LPRMKKMRPELPVLVMSAQNTFMTAIKASEKGAYEYLPKPFDLKELTSIVQRAL 119 >gi|24217076|ref|NP_714559.1| two-component response regulator [Leptospira interrogans serovar Lai str. 56601] gi|24202100|gb|AAN51574.1| response regulator [Leptospira interrogans serovar Lai str. 56601] Length = 230 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD + L + L K GYEV+ + SA V++E L+L D+ +P+ D Sbjct: 1 MRAKLLLVEDDRSLGETLQERLEKEGYEVLWTVSAVSAKKLVKDERPHLILLDVRLPDGD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA E +F+T A + + KPFHL++L+ V +L Sbjct: 61 GFALAEELKESKDCPPFLFLTAQAGAPERLRGFELGAEEFIPKPFHLKELLLRVKHVL 118 >gi|154245720|ref|YP_001416678.1| two component, sigma54 specific, Fis family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159805|gb|ABS67021.1| two component, sigma54 specific, transcriptional regulator, Fis family [Xanthobacter autotrophicus Py2] Length = 455 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 55/97 (56%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 +DDD +R ++AL A V + +A +++ + ++++D+ MP +DG+EL RR Sbjct: 8 DDDDLLRAANVQALMLADLTVTGYGSALAALEEIGADFPGVVVSDVRMPGIDGLELFRRL 67 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +DPDL V+ ITG +A+ D+ L+KP+ Sbjct: 68 RRIDPDLPVILITGHGDIAMAVDAMREGAYDFLAKPY 104 >gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 2028 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ D+R ++ LG+ V + NG A ++VR +P L+L D++MP +DG Sbjct: 1657 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQPPDLVLADVMMPGLDGFG 1716 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 L RA D D + + I +A A + + + L KPF R+L+ V Sbjct: 1717 LV-RALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRV 1769 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR +L + L + V + G+ A R P SL+++D++MP ++G+E Sbjct: 642 RILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANPPSLIISDVMMPGVNGLE 700 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + RA + ++ ++ A + L KPF ++L+ V LLT+ Sbjct: 701 LVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTV 759 >gi|311278386|ref|YP_003940617.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae SCF1] gi|308747581|gb|ADO47333.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae SCF1] Length = 1061 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D R L + L G +NGA+A +++ + LL+TD MP M+GIE Sbjct: 832 RVLIADDHPSSRLLLKRQLAMLGIAADEVDNGAAALRYIQQGHYDLLITDFNMPVMNGIE 891 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R+ DP+L + +T A S A L KP L +++++LL+ Sbjct: 892 LTRQIRRFDPELTIWGLTATAQEHERDRSLAAGMNACLFKPITL----SQISQLLS 943 >gi|297570521|ref|YP_003691865.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926436|gb|ADH87246.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 528 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++ILL +D++ + + L GY V NG + R++P + L++TD+ MP M Sbjct: 406 SEQILLVDDEESIAELGREVLTFYGYRVTVRCNGVQGLESFRKDPDRYDLVITDLTMPAM 465 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LA L P V+ +G + + + A L KP + +LV V +L Sbjct: 466 NGLRLAAAVKALRPRTPVILCSGHSEITSKARAEAQGIDLYLQKPLDMTELVQAVRGVL 524 >gi|170681202|ref|YP_001744414.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli SMS-3-5] gi|170518920|gb|ACB17098.1| sigma-54 dependent response regulator AtoC [Escherichia coli SMS-3-5] Length = 461 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRTLQLQS 124 >gi|126739384|ref|ZP_01755077.1| sensory box histidine kinase/response regulator [Roseobacter sp. SK209-2-6] gi|126719484|gb|EBA16193.1| sensory box histidine kinase/response regulator [Roseobacter sp. SK209-2-6] Length = 857 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 14/121 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+D R L + L + G+EV + GA A E F L+L DI MPE+DGIE Sbjct: 603 RVLVVEDNDINRELLKQMLEQQGHEVTTAPGGAEAVAACAEHSFDLVLMDISMPEVDGIE 662 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL--------SKPFHLRDLVNEVN 115 R K G VAL + A +A+++ +KP DL + + Sbjct: 663 AITRIR------KRKLAEGTEIVALTAHTAAEDHARIIRAGFAEVATKPISRHDLASVIA 716 Query: 116 R 116 R Sbjct: 717 R 717 >gi|90415547|ref|ZP_01223481.1| two-component response regulator NtrC [marine gamma proteobacterium HTCC2207] gi|90332870|gb|EAS48040.1| two-component response regulator NtrC [marine gamma proteobacterium HTCC2207] Length = 472 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 60/116 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I +AEDD +R + KA+ + G EV S NG ++ ++++DI MP +DG+E Sbjct: 6 EIWIAEDDRSLRWVMEKAISREGIEVRSFENGDDLLVALQSSLPEIIISDIRMPGIDGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L ++ PD+ V+ T + + + + L KPF L +LV+ R +T Sbjct: 66 LLKKIHSTRPDIPVIITTAHSDLDSAVAAYQGGAFEYLPKPFDLDELVDVARRGVT 121 >gi|15902622|ref|NP_358172.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|15458157|gb|AAK99382.1| Response regulator [Streptococcus pneumoniae R6] Length = 251 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 7 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 66 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 67 HLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 119 >gi|333030914|ref|ZP_08458975.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332741511|gb|EGJ71993.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 226 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 10/118 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ + F++K L + + V NG A + + +SL++ DI++P++DGIEL Sbjct: 3 LLLVEDNSRISEFMVKGLQENNFSVTLAVNGVEARQLITSKEWSLIILDIMLPDIDGIEL 62 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + ++ ++ ALN ++ LSKPFH +LV +N L Sbjct: 63 LQYTRFKKINTPILVVSALGDPEDKIKALNYGAD-----DYLSKPFHFGELVARINAL 115 >gi|332702075|ref|ZP_08422163.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552224|gb|EGJ49268.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 675 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLAED+D + L + G+EV+ +G A ++ EPF L+L D MP++DG+E Sbjct: 535 KVLLAEDNDVNALLAEELLRRRGHEVLRVQDGQEALQALQREPFDLVLMDWRMPKLDGLE 594 Query: 64 ---LARRA--TELDPDLKVMFITGFA 84 + RR+ +DPD+ ++ +T A Sbjct: 595 ATKIIRRSPPAGVDPDIPIIAVTASA 620 >gi|332096243|gb|EGJ01246.1| acetoacetate metabolism regulatory protein atoC domain protein [Shigella dysenteriae 155-74] Length = 133 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|330796122|ref|XP_003286118.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum] gi|325083937|gb|EGC37377.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum] Length = 1758 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL ED+ + K L +GY+ NNG A +KV+E + L+L D MPEMDG Sbjct: 1627 NEKILLVEDNFVNVKIFSKLLKDSGYKFTVANNGIEAVEKVKESEYDLILMDCQMPEMDG 1686 Query: 62 IE 63 E Sbjct: 1687 FE 1688 >gi|313899606|ref|ZP_07833114.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] gi|312955591|gb|EFR37251.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] Length = 229 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 11/119 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L EDD + L+ L K GYEVV C++ SA ++ ++ F LLL D+ +P+ Sbjct: 1 MLMKLLFVEDDQAIAMGLVYTLKKEGYEVVWCDHKRSALQQLDQQTFDLLLLDVGLPDGS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 G ++ A D+ V+F+T AL+ + N + ++KPF + +L++ + Sbjct: 61 GYDICTYAKS-RQDVPVLFLT-----ALDDEGNVVMGLDMGGDDYITKPFRINELLSRM 113 >gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 47/79 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD +RR + AL + GY+ + ++G A D + + L+++DI+MP MDG E Sbjct: 3 QILVVEDDASLRRLMSAALKQNGYQPFTASDGIEALDMLEKTNIDLIISDIMMPNMDGYE 62 Query: 64 LARRATELDPDLKVMFITG 82 L R+ + + ++ +T Sbjct: 63 LTRQLRNANFQMPIIMVTA 81 >gi|284044594|ref|YP_003394934.1| response regulator receiver protein [Conexibacter woesei DSM 14684] gi|283948815|gb|ADB51559.1| response regulator receiver protein [Conexibacter woesei DSM 14684] Length = 128 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D D MR I AL AG+E S +GA A +L D+ MPEMDG Sbjct: 6 ERRILIIDDSDVMREMAIIALEGAGWEATSVGSGAEAVSAATARQPDAVLLDVEMPEMDG 65 Query: 62 IEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 A R + + V+F+TG A+ A A L KPF + L E++ Sbjct: 66 PATLAALRRDDATTHIPVVFLTGHDEPAVLEGLVALGAAATLPKPFSVALLAGEIS 121 >gi|262402560|ref|ZP_06079121.1| response regulator [Vibrio sp. RC586] gi|262351342|gb|EEZ00475.1| response regulator [Vibrio sp. RC586] Length = 447 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++D+ + L + L + Y VV+ +NGA A + + ++++D+ MPEMDG + Sbjct: 13 ILLLDDENDILKALNRVL-RMEYNVVTFDNGAEALQYLEQNLIHIIISDMRMPEMDGADF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 +A E+ P + +TG+A + + NA +SKP+ Sbjct: 72 LAKAREMQPQTVRLLLTGYADIQSTVRAVNAGGIHTYISKPW 113 >gi|188579432|ref|YP_001922877.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342930|gb|ACB78342.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 581 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 5/117 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 Q++L+ ED+ ++ RF + L GYE N A + + F + +D+VMP M+ Sbjct: 461 QRVLVVEDNVEVGRFATQILEDLGYETTWAANAGEALAHLGPDGAGFDAVFSDVVMPGMN 520 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ELAR P L V+ +G++ V + ++L KP+ R L + + R+ Sbjct: 521 GVELAREIRRRFPSLPVVLASGYSHVLAQEGGHG---FELLHKPYSARQLSHILQRV 574 >gi|154492762|ref|ZP_02032388.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184] gi|154087067|gb|EDN86112.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184] Length = 1346 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+ D+RR++ K L + ++V+ NG A++K+ E L+++DI+MP+ DG++L Sbjct: 1093 LLLAEDNPDVRRYICKHL-EPYFDVLEAENGVDAFNKIAETLPDLVVSDIMMPKKDGLQL 1151 Query: 65 ARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ DL+ V+ IT + V + + KPF++ L+ + +L Sbjct: 1152 ---CSEIKQDLRTGHIPVIIITAKSMVMHIKEGFQCGADDYIVKPFNMEVLLCRIRNIL 1207 >gi|84684886|ref|ZP_01012786.1| nitrogen metabolism transcriptional regulator, NtrC [Maritimibacter alkaliphilus HTCC2654] gi|84667221|gb|EAQ13691.1| nitrogen metabolism transcriptional regulator, NtrC [Rhodobacterales bacterium HTCC2654] Length = 453 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG V + ++ + V E L+++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCRVHATSSLVTLKRWVEEGRGDLVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E ++ PDL V+ I+ + + + L KPF L DL+ +R L Sbjct: 61 GLEALPEIAQMRPDLPVIVISAQNTIMTAIQAAEAEAFDYLPKPFDLPDLMKRASRALEQ 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|15900562|ref|NP_345166.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111658662|ref|ZP_01409305.1| hypothetical protein SpneT_02000168 [Streptococcus pneumoniae TIGR4] gi|116516390|ref|YP_816073.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148989033|ref|ZP_01820433.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148992230|ref|ZP_01821953.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148997259|ref|ZP_01824913.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149002349|ref|ZP_01827291.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149005776|ref|ZP_01829515.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149010717|ref|ZP_01832088.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|149020275|ref|ZP_01835167.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168482889|ref|ZP_02707841.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|168487247|ref|ZP_02711755.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|168488342|ref|ZP_02712541.1| response regulator [Streptococcus pneumoniae SP195] gi|168492819|ref|ZP_02716962.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|168575331|ref|ZP_02721267.1| response regulator [Streptococcus pneumoniae MLV-016] gi|169832464|ref|YP_001694134.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194397419|ref|YP_002037317.1| response regulator [Streptococcus pneumoniae G54] gi|221231477|ref|YP_002510629.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225854187|ref|YP_002735699.1| response regulator [Streptococcus pneumoniae JJA] gi|225856355|ref|YP_002737866.1| response regulator [Streptococcus pneumoniae P1031] gi|225858489|ref|YP_002739999.1| response regulator [Streptococcus pneumoniae 70585] gi|237650328|ref|ZP_04524580.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821687|ref|ZP_04597532.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|303254758|ref|ZP_07340859.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|303259934|ref|ZP_07345908.1| Response regulator [Streptococcus pneumoniae SP-BS293] gi|303261339|ref|ZP_07347287.1| Response regulator [Streptococcus pneumoniae SP14-BS292] gi|303264005|ref|ZP_07349926.1| Response regulator [Streptococcus pneumoniae BS397] gi|303266319|ref|ZP_07352209.1| Response regulator [Streptococcus pneumoniae BS457] gi|303268786|ref|ZP_07354574.1| Response regulator [Streptococcus pneumoniae BS458] gi|307067279|ref|YP_003876245.1| CheY-like receiver/AraC DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126856|ref|YP_003878887.1| DNA-binding response regulator [Streptococcus pneumoniae 670-6B] gi|6911255|gb|AAF31452.1|AF221126_1 putative response regulator [Streptococcus pneumoniae] gi|5830541|emb|CAB54580.1| response regulator [Streptococcus pneumoniae] gi|14972134|gb|AAK74806.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116076966|gb|ABJ54686.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147756959|gb|EDK63999.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147759664|gb|EDK66655.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147762716|gb|EDK69676.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147765198|gb|EDK72127.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147925530|gb|EDK76607.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147928856|gb|EDK79868.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147930577|gb|EDK81559.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168994966|gb|ACA35578.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|172043833|gb|EDT51879.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|183569870|gb|EDT90398.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|183573021|gb|EDT93549.1| response regulator [Streptococcus pneumoniae SP195] gi|183577036|gb|EDT97564.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|183578558|gb|EDT99086.1| response regulator [Streptococcus pneumoniae MLV-016] gi|194357086|gb|ACF55534.1| response regulator TCS09 [Streptococcus pneumoniae G54] gi|220673937|emb|CAR68446.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225721136|gb|ACO16990.1| response regulator [Streptococcus pneumoniae 70585] gi|225723266|gb|ACO19119.1| response regulator [Streptococcus pneumoniae JJA] gi|225725020|gb|ACO20872.1| response regulator [Streptococcus pneumoniae P1031] gi|301793842|emb|CBW36235.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301801524|emb|CBW34216.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598298|gb|EFL65343.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|302637473|gb|EFL67960.1| Response regulator [Streptococcus pneumoniae SP14-BS292] gi|302638853|gb|EFL69314.1| Response regulator [Streptococcus pneumoniae SP-BS293] gi|302641651|gb|EFL72010.1| Response regulator [Streptococcus pneumoniae BS458] gi|302644130|gb|EFL74387.1| Response regulator [Streptococcus pneumoniae BS457] gi|302646410|gb|EFL76636.1| Response regulator [Streptococcus pneumoniae BS397] gi|306408816|gb|ADM84243.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483918|gb|ADM90787.1| DNA-binding response regulator [Streptococcus pneumoniae 670-6B] gi|332074466|gb|EGI84942.1| response regulator [Streptococcus pneumoniae GA17570] gi|332075955|gb|EGI86421.1| response regulator [Streptococcus pneumoniae GA41301] gi|332077088|gb|EGI87550.1| response regulator [Streptococcus pneumoniae GA17545] gi|332202538|gb|EGJ16607.1| response regulator [Streptococcus pneumoniae GA41317] gi|332203820|gb|EGJ17887.1| response regulator [Streptococcus pneumoniae GA47368] gi|332204678|gb|EGJ18743.1| response regulator [Streptococcus pneumoniae GA47901] Length = 245 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 HLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 232 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 19/125 (15%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPEMD 60 K+L+ ED++ +R F++ L + G+EV+ + G A + VR+ +LL D+++P MD Sbjct: 3 KVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALL--DVMVPGMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G E+ RR E + + ++F+T A+++ D + +SKPF +L+ Sbjct: 61 GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDH-------VSKPFSPTELIAR 113 Query: 114 VNRLL 118 + LL Sbjct: 114 IQSLL 118 >gi|298242638|ref|ZP_06966445.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] gi|297555692|gb|EFH89556.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] Length = 130 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ E++ R + + L GY +S +NG A + E L+LTD+ MP +DG Sbjct: 11 QRTILIIENEISNRILIERVLSTRGYRCISASNGREALSILDREHADLILTDLSMPVLDG 70 Query: 62 IELARRATEL---DPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVN 115 R T+L P ++ + I A AL+ + A + + L+KPF R L+ V Sbjct: 71 Y----RTTQLIRSRPGMQQIPIIAVTAYALHDEGEAAREIGCTEYLTKPFKPRQLLEIVG 126 Query: 116 RLL 118 RLL Sbjct: 127 RLL 129 >gi|294810650|ref|ZP_06769299.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442119|gb|EFG10937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1321 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L + L K Y V +C+NG A RE L+L+D++MPEM G Sbjct: 1069 QRILIVEDNDDLRTYL-EGLLKEEYLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL + D++ I AL + + + + ++KPF + L + + Sbjct: 1128 EL---CASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNI 1184 Query: 118 L 118 L Sbjct: 1185 L 1185 >gi|293369031|ref|ZP_06615630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635903|gb|EFF54396.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1321 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L + L K Y V +C+NG A RE L+L+D++MPEM G Sbjct: 1069 QRILIVEDNDDLRTYL-EGLLKEEYLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL + D++ I AL + + + + ++KPF + L + + Sbjct: 1128 EL---CASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNI 1184 Query: 118 L 118 L Sbjct: 1185 L 1185 >gi|297569079|ref|YP_003690423.1| response regulator receiver protein [Desulfurivibrio alkaliphilus AHT2] gi|296924994|gb|ADH85804.1| response regulator receiver protein [Desulfurivibrio alkaliphilus AHT2] Length = 191 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 57/107 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D++ +R L L +AGY V + G A + R F L++TD++M MDG+E Sbjct: 7 KILLVDDEELIRASLAMDLAEAGYSVAAAAGGEEALEMFRRGEFDLVITDLLMEGMDGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R P++ VM +TG+ A+ ++ L KP+ +L Sbjct: 67 LLRGLRSEAPEVGVMILTGYGALPTAIEAIRLGADDYLLKPYQFEEL 113 >gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 229 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ ED+ + RF+ L GYEV ++G + +E + L+L DI++P M+ Sbjct: 1 MKGKILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPSMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 GIE+ RR E D+ V+ +T + D A ++KPF + +L+ Sbjct: 61 GIEILRRLRE-SSDIPVIMLTAKDETMDKVMGLDMGAD---DYVTKPFEIEELL 110 >gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] Length = 241 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E +G AY E ++ +L D+++PEMD Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVATQLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|310659029|ref|YP_003936750.1| regulator of chemotaxis and motility [Clostridium sticklandii DSM 519] gi|308825807|emb|CBH21845.1| regulator of chemotaxis and motility [Clostridium sticklandii] Length = 120 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + ILL +D MR L L K GY+V+ NG A +K +E L++ DI MPEM Sbjct: 1 MAKGILLVDDAAFMRMMLKDILVKNGYDVLGEAENGLKALEKYKELNPDLVIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGIE + +++P V+ + ++ ++ + KPF ++ V +++ Sbjct: 61 DGIEAVKEIKKVNPSAAVIMCSAMGQQSMVIEAIQSGAKDFIVKPFQADRIIEAVRKVI 119 >gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 247 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +GA A VRE ++ DI++P+MDG+ Sbjct: 23 RVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGLA 82 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R PD+ V+F+T AV ++KPF L ++V + L+ Sbjct: 83 VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLI 137 >gi|255035253|ref|YP_003085874.1| multi-sensor signal transduction histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948009|gb|ACT92709.1| multi-sensor signal transduction histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1118 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 5/110 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ DMR+ + LG + Y+ ++ +NG A + +R +L+L+D++MPEMDGI L Sbjct: 625 VLIADDNADMRQHIQSLLG-SEYDTLTASNGVEALEIIRRHRPALVLSDVMMPEMDGIAL 683 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 +A + DP + ++ IT A + + KPF R+L+ Sbjct: 684 L-KAVKNDPVIAQTPIILITARAGEESRIEGIEIGADDYIVKPFSSRELI 732 >gi|194292500|ref|YP_002008407.1| response regulator receiver ATP-binding histidine kinase, chea family [Cupriavidus taiwanensis LMG 19424] gi|193226404|emb|CAQ72353.1| Response regulator receiver ATP-binding histidine kinase, cheA family [Cupriavidus taiwanensis LMG 19424] Length = 771 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R EPF L++TDI MP MDGI Sbjct: 648 RRVLVVDDSLTVRELQRKLLAGRGYDVSVAVDGMDGWNVLRAEPFDLVITDIDMPRMDGI 707 Query: 63 ELARR 67 EL RR Sbjct: 708 ELVRR 712 >gi|170751195|ref|YP_001757455.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] gi|170657717|gb|ACB26772.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] Length = 121 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +D +R+ + LG AG+ V+ +GA K R E +L++TD+ MP M+G+E+ Sbjct: 4 VLAVDDSPSIRQMIKVVLGPAGHTVIEAGDGAEGLAKARSESVNLVITDLNMPVMNGLEM 63 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ L + ++F++ + + + A ++KPF L+ V +L+ Sbjct: 64 IKQLRTLPSFTGVPILFLSTESDEGIKQQAKAAGATGWITKPFKPEQLLAVVGKLV 119 >gi|167623448|ref|YP_001673742.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167353470|gb|ABZ76083.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1180 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 55/112 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED + L K+G++V NNG A + + L+L D+ MPEMDGIE Sbjct: 878 ILLAEDSPANQIVASALLNKSGFKVEIANNGIEALKMASTKEYGLILMDMRMPEMDGIEA 937 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ +LDP V+ +T + + KP + +LVN VN+ Sbjct: 938 TQKILQLDPSQIVIAMTANVQKEDVELCMSAGMKDFVPKPVNRENLVNVVNQ 989 >gi|218779891|ref|YP_002431209.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761275|gb|ACL03741.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 865 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++I+L ED++ + + L K GY+V + A + ++ P LLLTD+ MP M Sbjct: 745 DERIMLVEDEEAILDMTHRMLKKLGYKVTPFQSSQEALEAFKDAPRAHDLLLTDMTMPHM 804 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 G ELA + E+ D+ ++ TGF+ Sbjct: 805 TGFELAVKIREIRSDMPILLCTGFS 829 >gi|157151021|ref|YP_001450462.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075815|gb|ABV10498.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 244 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 17/116 (14%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED+ +R+ + + + G +V++ NG A+ K +E P +LLTDI MP M+G Sbjct: 4 IMIVEDEYLVRQGIASLVNYEQFGMQVIAQAENGREAWQKFQENPVDILLTDINMPLMNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +ELA+ A E P ++F+TG+ A+ L D L KPF D+ Sbjct: 64 LELAKLAREKAPKCHIVFLTGYDDFDYARTAIKLGADD-------YLLKPFSKTDV 112 >gi|298208466|ref|YP_003716645.1| two-component system, transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] gi|83848389|gb|EAP86258.1| two-component system, transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] Length = 236 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L YEV NG ++K +++ + L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGIVLKDYLSMNDYEVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + ++ ++F+T A A+ D K KV L+KPF Sbjct: 65 FTLAKEIREKNEEVPIIFLT---AKAMKED--VLKGYKVGADDYLNKPF 108 >gi|84516238|ref|ZP_01003598.1| nitrogen metabolism transcriptional regulator, NtrC [Loktanella vestfoldensis SKA53] gi|84509934|gb|EAQ06391.1| nitrogen metabolism transcriptional regulator, NtrC [Loktanella vestfoldensis SKA53] Length = 458 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + ++ + V E L+++D++MP+ + Sbjct: 2 MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVIMPDGN 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E + L P L V+ I+ + + L KPF L DL+ R L Sbjct: 62 GLEQLPKIAALRPGLPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRAARALET 121 Query: 121 K 121 K Sbjct: 122 K 122 >gi|328946836|gb|EGG40973.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 234 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY V + +G A D +E + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMIHEGYHVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|325104183|ref|YP_004273837.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pedobacter saltans DSM 12145] gi|324973031|gb|ADY52015.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pedobacter saltans DSM 12145] Length = 466 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L L +EV +NG D ++++ F L+L DI M +MDG+E Sbjct: 3 KILIIDDERAIRSTLRDILEYENFEVEDVDNGIDGLDLIKKKNFDLVLCDIKMNKMDGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + PDL + I+G V +++ +SKP L L L+T++N Sbjct: 63 VLTKGLSVKPDLPFIMISGHGTVETAVEASKKGAFDFISKPPDLNRL------LITVRN 115 >gi|308271786|emb|CBX28394.1| hypothetical protein N47_G37180 [uncultured Desulfobacterium sp.] Length = 331 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 2/103 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 IL+ +D++ +R L K L K GYEV +GA D V+++ +++D MP +DG+ Sbjct: 4 ILVVDDEEGIRIALQKVLKKDGYEVFLAESGAEGIDIVKKQINEIETVISDFKMPGLDGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E ++ ++P++ + +TG+A + +S L+KPF Sbjct: 64 ETLQQIGRINPEITRIILTGYATLERAIESVNSDIDGFLTKPF 106 >gi|302343424|ref|YP_003807953.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301640037|gb|ADK85359.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfarculus baarsii DSM 2075] Length = 460 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD R + +AL G+EV+ +G SA +R + F L+LTD+ +P G+E+ Sbjct: 7 ILVVEDDRQSRIMVRQALALDGHEVIEAADGDSAMALLRRQGFQLVLTDLRLPGAGGLEI 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 TE P V+ ++GF ++ L ++ KP + L V+R L Sbjct: 67 LGYITENMPGTPVIVMSGFGSIDLAVEAMRRGAYDFQEKPLNTDHLRMTVDRAL 120 >gi|288962440|ref|YP_003452735.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288914706|dbj|BAI76191.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 797 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED R + L +AG++V N+GA+A V+++P+ ++L D+ MP MDG+E Sbjct: 633 RILLAEDLAMNRDLAVTMLTRAGHQVDVVNDGAAALAAVQDQPYDVVLMDVQMPVMDGLE 692 Query: 64 LARRATEL 71 RR L Sbjct: 693 ATRRIRAL 700 >gi|256842620|ref|ZP_05548121.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256735757|gb|EEU49090.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1321 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L + L K Y V +C+NG A RE L+L+D++MPEM G Sbjct: 1069 QRILIVEDNDDLRTYL-EGLLKEEYLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL + D++ I AL + + + + ++KPF + L + + Sbjct: 1128 EL---CASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNI 1184 Query: 118 L 118 L Sbjct: 1185 L 1185 >gi|307592392|ref|YP_003899983.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986037|gb|ADN17917.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 395 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + R L LG+AGY+V S NG +A ++ + L+L D+ MP MDG EL Sbjct: 8 ILIIDDEVENLRLLALILGEAGYQVRSAINGRAALGVIKNQIPDLILLDVKMPVMDGFEL 67 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +A D+ ++F++ V+ + ++KP+H +++ V+ L++ Sbjct: 68 CQTLKAASDWCDIPIVFLSAAEGVSDKVKAFELGGVDYITKPYHAAEVIARVHIHLSL 125 >gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39] gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + QKIL+ +D+ D+ + L K GY+V NNG ++ L++ DI+MP+MD Sbjct: 4 VKQKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GIE R + P+ K F+ A + A N ++KP R LV+ +N + Sbjct: 64 GIEACRLMRAI-PEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAI 122 Query: 118 L 118 L Sbjct: 123 L 123 >gi|319762875|ref|YP_004126812.1| pas sensor protein [Alicycliphilus denitrificans BC] gi|317117436|gb|ADU99924.1| PAS sensor protein [Alicycliphilus denitrificans BC] Length = 722 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 Q+ ++ DDD FL+ + L + GYEV + A D +R P + LL+TD MP Sbjct: 601 QRHVMYVDDDAALVFLVQRLLRRRGYEVSGFTDPHEATDALRAAPGRYDLLVTDYNMPGY 660 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G++L R A + PDL V +G+ + + A ++ KP + +L V+RL Sbjct: 661 SGLDLVRAARAIRPDLPVALASGYVTAEIEQAALAEGARALIHKPNDVEELCATVDRL 718 >gi|283851819|ref|ZP_06369096.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] gi|283572735|gb|EFC20718.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] Length = 453 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +K +LA DDD + L L AGY+VV+ +GA A + + + P L+++DI MP MD Sbjct: 7 TRKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPGMD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L L ++F+T ++ ++ L+KPF ++L+ V + Sbjct: 67 GMRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVF 124 >gi|261253619|ref|ZP_05946192.1| chemotaxis protein CheV [Vibrio orientalis CIP 102891] gi|260937010|gb|EEX92999.1| chemotaxis protein CheV [Vibrio orientalis CIP 102891] Length = 308 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 9/86 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EVVS +G AYDK+ E + SL+++DI Sbjct: 182 RRILIADDSTVARKQVERAITSLGFEVVSAKDGKEAYDKLVEMAATGSIYDQISLVISDI 241 Query: 55 VMPEMDGIELARRATELDPDLKVMFI 80 MPEMDG L PDLK +++ Sbjct: 242 EMPEMDGYTLTAEVRR-HPDLKDLYV 266 >gi|251779963|ref|ZP_04822883.1| response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084278|gb|EES50168.1| response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 218 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ EDD+ + + L GY+ +G A++ ++EEPF L+L DI++P MD Sbjct: 1 MKINVLIIEDDEAISNLIKINLSMVGYKSKQLFDGLEAFNLLKEEPFDLILMDIMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL ++ +L ++ V+F+T +A + KPF +L+ + +L Sbjct: 61 GFELMKKIKDL--NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVL 116 >gi|300773206|ref|ZP_07083075.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759377|gb|EFK56204.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 230 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 56/107 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ M + + +AL G+ V +G A+ R + + + D++MP DG L Sbjct: 6 ILLAEDEVLMGKIIKEALESRGFTVTWVTDGLKAFSSFRAQRPDICIFDVMMPVQDGFTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 A+ ++D D+ ++F+T ++ A + L KPF + +L+ Sbjct: 66 AKEIRKIDNDIPILFLTAKSSTADIVEGFELGANDYLKKPFSMEELI 112 >gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|238028729|ref|YP_002912960.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia glumae BGR1] gi|237877923|gb|ACR30256.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia glumae BGR1] Length = 455 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD+ +RR +++L AG+EV + +A + E +++DI +P G+E Sbjct: 6 QVIYIEDDELVRRAAVQSLQLAGFEVAGFGSAEAAEKAILGERVGAVVSDIRLPGASGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R + Sbjct: 66 LLAQCRERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAI 120 >gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|160880833|ref|YP_001559801.1| response regulator receiver protein [Clostridium phytofermentans ISDg] gi|160429499|gb|ABX43062.1| response regulator receiver protein [Clostridium phytofermentans ISDg] Length = 120 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D MR + L K GY V NG A ++ E L++ DI MPEM Sbjct: 1 MAKSILICDDAAFMRMMIKDILTKNGYSVAGEAENGLKAVERYNETKPDLVMMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ ++ +DP+ V+ + A+ +S + KPF ++ V + + Sbjct: 61 DGIQALKKIKSVDPNATVIMCSAMGQQAMVIESIQSGAKDFIVKPFQADRVLEAVKKAI 119 >gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRSEGHTVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|325917908|ref|ZP_08180081.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325535888|gb|EGD07711.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 692 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 Q++L+ EDD+ +R + + LG+ GY+ + +A + + LL+TD+ +P ++G Sbjct: 572 QQVLVVEDDEQVRLLVTELLGELGYQAEVVADADAALPILASQRRIDLLVTDVGLPGLNG 631 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 632 RQLAEIARQSRRDLPVIFMTGYAETARDRGEFLAEGMSMIAKPFTLGEFSGKLHEVL 688 >gi|302337012|ref|YP_003802218.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301634197|gb|ADK79624.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 944 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED++ +R + L +AG+ V NG A + ++ EPF L+L D+ MPEMDG+E Sbjct: 680 RVLLAEDNELNQRSISYFLEEAGHLVTIAANGREAIEVLKREPFDLILMDVQMPEMDGME 739 Query: 64 ---LARRATE--LDPDLKVMFITGFA 84 + R T+ +P++ ++ +T +A Sbjct: 740 ATGIIRSHTDRLFNPNIPIIALTAYA 765 >gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 237 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +ILL +D+ ++ L L + GYEVV +G A + E PF L++ D+++P++DG Sbjct: 5 STRILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVMLPQLDG 64 Query: 62 IELARR 67 +E+ RR Sbjct: 65 LEVCRR 70 >gi|240849737|ref|YP_002971125.1| transcriptional regulator BatR [Bartonella grahamii as4aup] gi|240266860|gb|ACS50448.1| transcriptional regulator BatR [Bartonella grahamii as4aup] Length = 240 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MD Sbjct: 7 ITQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + DL V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLLTIKN 122 V +L N Sbjct: 119 VKAILRRSN 127 >gi|239908712|ref|YP_002955454.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239798579|dbj|BAH77568.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 389 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 8/125 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL+AEDD R+ L L K GY+VV+ NG A+ +++ + L + D +MPE+DG+ Sbjct: 2 RILIAEDDPASRKILTVCLEKLGYQVVATTNGLEAWQAMQQADAPKLAILDWMMPEIDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN---R 116 E+ RR ++ + I +A+ D +A L+KPF++ +L + R Sbjct: 62 EVCRRLRAINARQQPYLIL-LSALGTKEDIAKGLDAGADDYLTKPFNVLELQARIKVGVR 120 Query: 117 LLTIK 121 LL ++ Sbjct: 121 LLEMQ 125 >gi|239907910|ref|YP_002954651.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239797776|dbj|BAH76765.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 132 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDDD + L K G+E+ NG A++ + E F L+L DI MP MDGIE Sbjct: 2 KILVAEDDDVNIIVYTRMLSKLGHEITLARNGKEAFEASKVENFDLILMDINMPLMDGIE 61 Query: 64 ---LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVN 112 L R++T L+ + IT + + ++L KP L++L N Sbjct: 62 STHLIRKST-LNTSTSIYAITATTTDIVLAQAGKRTFDRILMKPISFMALKELTN 115 >gi|227820416|ref|YP_002824387.1| DctD, C4-dicarboxylate transport transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227339415|gb|ACP23634.1| DctD, C4-dicarboxylate transport transcriptional regulatory protein [Sinorhizobium fredii NGR234] Length = 453 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ + L +DD D+R+ + + L AG+ V S + A A + + ++++DI MP MD Sbjct: 1 MSGSVFLVDDDRDLRKAMQQTLELAGFTVSSFASAAEALAALTADFSGVVISDIRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ L R+ ELD DL V+ +TG + + + ++KPF LV R Sbjct: 61 GLALFRKIAELDADLPVILVTGHGDIPMAVQAIQDGVYDFIAKPFAADRLVQSARR 116 >gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 2/114 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ ILL +D++++ F+ +L GY V++ +G A + + +P SL++ D++MPEMDG Sbjct: 5 NETILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEALIQSKRQP-SLIILDVMMPEMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 IE+ ++ E ++F++ + A L KPF L +L ++ Sbjct: 64 IEVCKQLRE-TTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIH 116 >gi|218779127|ref|YP_002430445.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218760511|gb|ACL02977.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 134 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 59/109 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +LL +D+ + + L AL K G EV N A ++ E+ F +++TDI M E+DG Sbjct: 3 NLDVLLLDDEPIVGKRLKPALAKVGCEVEVFQNPVEALKRIDEKDFDIVVTDISMAEVDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++ + + KV+ ITGFA ++L ++ ++KPF DL Sbjct: 63 MQVLEQVVAKNNATKVIMITGFAMMSLAREAMEKGAFDFIAKPFKPDDL 111 >gi|163753061|ref|ZP_02160185.1| hypothetical protein KAOT1_12912 [Kordia algicida OT-1] gi|161326793|gb|EDP98118.1| hypothetical protein KAOT1_12912 [Kordia algicida OT-1] Length = 227 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMD 60 K+LLAED+ + + + ++L +EV C NG A Y KV+ E +L+ D++MP+ D Sbjct: 7 KLLLAEDEPALGQIVKESLESRDFEVFLCENGEEAWRIYQKVQPE---ILVLDVMMPKKD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA+ + + + ++F+T + V + L KPF + +L+ ++ LL Sbjct: 64 GFTLAQEIRQENATIPIIFLTAKSQVKDVVEGFQHGGNDYLKKPFSMEELIVRIHALL 121 >gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 846 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED ++ + + + G+++ NG K+RE+ F ++L DI MP MDGI+ Sbjct: 687 RVLLAEDQPVNQKLMCAVMERLGHQLTIAENGVEVIRKLREQSFDIILMDIQMPLMDGIQ 746 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +D D+ ++ +T A A +SKPF + LV E+ R L+ Sbjct: 747 TTKVIRAVDEPWNDIPIVALTAHAMEGHCELYMAAGMNGFVSKPFKIDVLVEEMARALS 805 >gi|222055651|ref|YP_002538013.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221564940|gb|ACM20912.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 452 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 57/110 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD+ +RR L L + GYEV + ++G + L++TD+ M MD Sbjct: 1 MKGKILVIDDDNSLRRVLEYNLKEEGYEVQAASSGEEGLFLFGQSQPDLVITDMKMSGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ + + E P+ V+ IT F V + ++ ++KPF+ +L Sbjct: 61 GLMVLKSIKERSPETLVIIITAFGTVNIAVEAMKAGAYDYITKPFNRDEL 110 >gi|148264719|ref|YP_001231425.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398219|gb|ABQ26852.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 457 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ MR FL L + GY V N A + + + L+++D+ MP ++ Sbjct: 1 MQTKILVVDDEQSMREFLAILLEREGYYVAQAENAEVALKLLESDTYDLVVSDVSMPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ L R P+ V+ IT + ++ ++KPF + ++ Sbjct: 61 GMALLARIKTTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEV 110 >gi|332663454|ref|YP_004446242.1| putative two component sigma-54 specific transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332268|gb|AEE49369.1| putative two component, sigma54 specific, transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] Length = 399 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ +RR L + L ++V +G K++E+ F +L DI MP +D Sbjct: 1 MTTQILIVDDEASIRRALREILEFEKFKVSEAADGLDCLAKLKEQTFDAILMDIKMPNLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL-T 119 G++ R E+ PD V+ I+G A + ++ +SKP ++NRLL T Sbjct: 61 GMDTLERLQEVAPDTPVIMISGHATIDTAVEAVKRGAFDFISKP-------PDLNRLLIT 113 Query: 120 IKN 122 ++N Sbjct: 114 LRN 116 >gi|330824954|ref|YP_004388257.1| PAS/PAC sensor hybrid histidine kinase [Alicycliphilus denitrificans K601] gi|329310326|gb|AEB84741.1| PAS/PAC sensor hybrid histidine kinase [Alicycliphilus denitrificans K601] Length = 722 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 Q+ ++ DDD FL+ + L + GYEV + A D +R P + LL+TD MP Sbjct: 601 QRHVMYVDDDAALVFLVQRLLRRRGYEVSGFTDPHEATDALRAAPGRYDLLVTDYNMPGY 660 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G++L R A + PDL V +G+ + + A ++ KP + +L V+RL Sbjct: 661 SGLDLVRAARAIRPDLPVALASGYVTAEIEQAALAEGARALIHKPNDVEELCATVDRL 718 >gi|328952250|ref|YP_004369584.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452574|gb|AEB08403.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 822 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ +D+ + + + L + GY+V + N A + P F L++TD+ MP + Sbjct: 700 ERILVVDDEPPIADLVQQLLQRLGYQVTAVTNSQEALKIFQANPDAFDLVITDLTMPHLT 759 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL+R+ + DL ++ +G++ + + + + L KP R + R+L Sbjct: 760 GLELSRKILQRRADLPIILCSGYSDITVAAEMRKIGIKEYLMKPISARTYGETIRRIL 817 Score = 40.4 bits (93), Expect = 0.089, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMP-EMD 60 ++IL+AED+ + + + L K GY+VV ++GA K E L+L DIV+ +M+ Sbjct: 4 KRILIAEDEAIVAEDIRRTLEKFGYQVVGMVSSGAEVLAKTAEFNPDLVLMDIVLQGKMN 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE A + V+F+T +A A + + + KPF + L Sbjct: 64 GIE-AAEVIQTRHQTPVIFLTAYADAATLERAKVTEPFGYILKPFEDQSL 112 >gi|315606340|ref|ZP_07881356.1| response regulator [Prevotella buccae ATCC 33574] gi|315252031|gb|EFU32004.1| response regulator [Prevotella buccae ATCC 33574] Length = 535 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ +LL DD+ ++ + I L K YEV + NNG+ A D R++ F L+L D +MP + Sbjct: 1 MSNGLLLWIDDEIELLKAHIIFLEKKEYEVTTVNNGSDAIDLCRQQTFDLILLDEMMPGL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E R E+ P V+ T + + K A L KP VN LLT Sbjct: 61 SGLETLHRLKEIQPSTPVVMCTKSEEENIMEQAIGSKIADYLIKP------VNPSQILLT 114 Query: 120 IK 121 +K Sbjct: 115 LK 116 >gi|303246663|ref|ZP_07332941.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio fructosovorans JJ] gi|302492003|gb|EFL51881.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio fructosovorans JJ] Length = 459 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL +DD + L L AGY+VV+ +G A + + P LL++DI MP MDG+ Sbjct: 11 KTILAVDDDPHILEVLEVRLVSAGYDVVTAEDGTEALEILSSRPVRLLISDIRMPGMDGM 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L L ++F+T ++ ++ L+KPF ++L++ V Sbjct: 71 RLQEEMVRRGLSLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLSRV 122 >gi|301057951|ref|ZP_07199008.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] gi|300447918|gb|EFK11626.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] Length = 453 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ + + L L G+EV + +G A KV E L+L DI M MD Sbjct: 1 MSKTILVVDDETSILQSLEGILSDEGFEVATAESGLEALKKVEETMPDLVLLDIWMSGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE + +L P L+V+ ++G + + + KP L L+ +N L Sbjct: 61 GIETLEKIKDLYPRLQVIMMSGHGNIETAVKATKVGAYDYIEKPLSLEKLLLSINNAL 118 >gi|257468828|ref|ZP_05632922.1| response regulator receiver protein [Fusobacterium ulcerans ATCC 49185] Length = 223 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPE 58 M +KIL+ +D+ ++R L L G+E+ + +NG+ A + + E+ + L+L DI MP+ Sbjct: 1 MKKKILITDDEKNIRTTLNYCLSAEGFEIETASNGSEALELLLEQGKSYDLILLDIKMPD 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 + G+E+ R+ D ++ +T + + ++ +SKPF +R LV +V Sbjct: 61 ISGMEVLRKLRGADNKTNIIMMTAYGTIKEAVEAMKLNAIDFISKPFTPEQIRVLVKKV 119 >gi|239833780|ref|ZP_04682108.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Ochrobactrum intermedium LMG 3301] gi|239821843|gb|EEQ93412.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Ochrobactrum intermedium LMG 3301] Length = 450 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 58/112 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++L +DD +RR + L AG++V N A + V +++TD+ MP++DG++L Sbjct: 8 VILVDDDRALRRATRQTLELAGFDVADFPNALDALNSVTSAYDGVVVTDVRMPQIDGLQL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R +D +L V+ ITG + + + ++KPF LV+ + R Sbjct: 68 FARIKAVDAELPVILITGHGDIPMAVQAIQDGAYDFIAKPFAADRLVHSIRR 119 >gi|227536955|ref|ZP_03967004.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227243151|gb|EEI93166.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 230 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 56/107 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ M + + +AL G+ V +G A+ R + + + D++MP DG L Sbjct: 6 ILLAEDEVLMGKIIKEALESRGFTVTWVTDGLKAFSSFRAQRPDICIFDVMMPVQDGFTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 A+ ++D D+ ++F+T ++ A + L KPF + +L+ Sbjct: 66 AKEIRKIDNDIPILFLTAKSSTADIVEGFELGANDYLKKPFSMEELI 112 >gi|118581064|ref|YP_902314.1| histidine kinase [Pelobacter propionicus DSM 2379] gi|118503774|gb|ABL00257.1| histidine kinase [Pelobacter propionicus DSM 2379] Length = 718 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 + ILLAEDD+ +R L GYEV+ +G A K E +LLL D+VMP+M Sbjct: 596 ETILLAEDDEAVRNMAEAILQHFGYEVIVAVDGEDAVQKYLKHAERINLLLFDLVMPKMS 655 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G E + P++KV+F +G + +NA ++ KP+ Sbjct: 656 GQEAYVEIKKHAPNIKVVFASGHTPEIIKQRKLVDENALLIFKPY 700 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + R L L + G V+ +G D +++++ +MP MDG +L Sbjct: 3 ILIVEDNPNEREILRFTLERHGCMVIEAADGLEGLDLAIHRQPDIIVSNTLMPRMDGFQL 62 Query: 65 ARRATELDPDL 75 A + DP L Sbjct: 63 L-WALKADPKL 72 >gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V++ ++G A V E L + D++MP MDG Sbjct: 2 KRILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|108761028|ref|YP_634745.1| response regulator [Myxococcus xanthus DK 1622] gi|108464908|gb|ABF90093.1| response regulator [Myxococcus xanthus DK 1622] Length = 470 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ ++ L + +AGYEV+ + G A + + +P + + DI++P+M Sbjct: 32 MAPRILVVDDNQELLSLLTQLFEEAGYEVIGASRGKQAVELAKAQPPAAAVLDILLPDMM 91 Query: 61 GIELARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G LA + +P L ++FITG AV A A KPF + L+ + Sbjct: 92 GYHLADALRKDNPQLPLLFITGVFKGGKHAVEARTKYQA---AGYFEKPFEAQKLLEAMT 148 Query: 116 RLL 118 ++L Sbjct: 149 KVL 151 >gi|78223875|ref|YP_385622.1| response regulator receiver domain-containing protein [Geobacter metallireducens GS-15] gi|78195130|gb|ABB32897.1| response regulator receiver domain protein (CheY-like) [Geobacter metallireducens GS-15] Length = 129 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 60/108 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+++ R L K L + G+EV S +NG A + + + ++++TDI MPEM+GI Sbjct: 7 KRILVVDDEENARIGLSKLLEREGFEVESVSNGYEALNYLNQRQVNVIVTDINMPEMNGI 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + P V+ IT + V ++ + ++KP + +L Sbjct: 67 TFLKELNKNFPASNVIMITAYGGVESYIEAMNLGAFEYINKPIKIDEL 114 >gi|116748079|ref|YP_844766.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] gi|116697143|gb|ABK16331.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] Length = 135 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 56/113 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D++ L K L + GY V ++G SA V EE F +++ D+ MP MDGIE Sbjct: 5 RILLVDDEEAFANNLSKLLSRRGYAVAVVHDGQSAVRAVDEEEFDVVILDLRMPGMDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + P ++V+ +TG ++ D KP L +L ++ + Sbjct: 65 TLKILKRRKPLVEVIILTGEGSIETGLDGMQYGAFDYTLKPIQLDELQEKIGQ 117 >gi|146302027|ref|YP_001196618.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156445|gb|ABQ07299.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 223 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 10/118 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD + F+IK L + + V G A D V+E + ++L DI++P +DGI+L Sbjct: 3 VLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGIQL 62 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + ++ ++ + AL DS A L KPFH ++L++ VN L Sbjct: 63 VKLMRFKKIHTPILILSALSNTDDKVTAL--DSGAD---DYLVKPFHFKELISRVNAL 115 >gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAEGHTIPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|45655596|ref|YP_003405.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602567|gb|AAS72042.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 230 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD + L + L K GYEV+ + SA V++E L+L D+ +P+ D Sbjct: 1 MRAKLLLVEDDRSLGETLQERLEKEGYEVLWTVSAVSAKKLVKDERPHLILLDVRLPDGD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA E +F+T A + + KPFHL++L+ V +L Sbjct: 61 GFALAEELKESKDCPPFLFLTAQAGAPERLRGFELGAEEFIPKPFHLKELLLRVKHVL 118 >gi|260061560|ref|YP_003194640.1| putative two-component response regulator transcriptional regulatory protein [Robiginitalea biformata HTCC2501] gi|88785692|gb|EAR16861.1| putative two-component response regulator transcriptional regulatory protein [Robiginitalea biformata HTCC2501] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS-AYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD + L + L + GY+V C GA A + + LLLTD+ +P DGI Sbjct: 3 KILIIEDDAAFGQMLSRYLERNGYQV-QCFPGAEPAMESLDRGGVDLLLTDLRLPASDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E+ + P+ V+ +TG+A V S A +SKPF Sbjct: 62 EIMESVKKKHPETAVIIMTGYAEVETAVSSMKKGAADYISKPF 104 >gi|172056761|ref|YP_001813221.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989282|gb|ACB60204.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 221 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I L +D+ ++ R L+K L + G++V S +G +A + E+P L + DI++P++D Sbjct: 1 MMHTIYLVDDEVNLNRVLVKYLEQEGWQVKSFTSGEAAASAIIEKP-DLWILDIMLPDLD 59 Query: 61 GIELARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G +L +R D V+FI+ + L S+ ++KPF R+LV V Sbjct: 60 GFQLIKRIKAHDETTPVIFISARDEDIDKIIGLEMGSD-----DYIAKPFLPRELVIRVK 114 Query: 116 RLL 118 ++L Sbjct: 115 KIL 117 >gi|324976995|ref|YP_004263998.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] gi|324320344|gb|ADY38233.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] Length = 232 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 20/129 (15%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD ++ + L GYEV++ NG E ++++DI MPEMDG Sbjct: 3 KLLLVEDDVNLCYIVQAGLQDVIGGYEVITAGNGLEGLHAWEEHKPDIIISDIDMPEMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---------VLSKPFHLRDLVN 112 E+ RR E D D ++F + +PK+ K + KPF ++ Sbjct: 63 FEMVRRIRETDGDTPILFASAM---------TSPKDVKHGYELGVNNYVKKPFVPEEIDA 113 Query: 113 EVNRLLTIK 121 ++ +L +K Sbjct: 114 HIHAILKMK 122 >gi|323699563|ref|ZP_08111475.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459495|gb|EGB15360.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 813 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 11/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLA+D+ R L + G+ V++ NG A + +RE PF L+L D+ MP MDG+ Sbjct: 555 VLLADDNPLNRELATTLLSERGHRVLAVKNGIEALNALREAPFDLVLMDVQMPIMDGVSA 614 Query: 65 AR-----RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 R + L+P++ ++ +T A AL D +A + ++KP +RD + + R Sbjct: 615 TRAIRDPNSGALNPNVPIIALT---AHALKGDRERFLDAGMNDYIAKPIKMRDFYHTIAR 671 Query: 117 LL 118 + Sbjct: 672 AM 673 >gi|317494184|ref|ZP_07952600.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917957|gb|EFV39300.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 464 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++ R L + G +V +NG A +E ++L DI MP M+G+E Sbjct: 6 RILIVDDEKNVLRMLNTVFSQEGNQVFCADNGQDALAIFEQERPDVVLMDIRMPTMNGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +R E D ++ +T +AAV ++ + KPF L +L +NR L ++N Sbjct: 66 ALQRMREKWLDTPIILMTAYAAVETAVEALRLGAFDYVIKPFELDELKLLINRALQLRN 124 >gi|312967522|ref|ZP_07781737.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 2362-75] gi|312287719|gb|EFR15624.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 2362-75] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGALDYVIKPFDLDELNLIVQRALQLQS 124 >gi|302035627|ref|YP_003795949.1| signal transduction response regulator, receiver domain [Candidatus Nitrospira defluvii] gi|300603691|emb|CBK40022.1| Signal transduction response regulator, receiver domain [Candidatus Nitrospira defluvii] Length = 123 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D++ +RR + L +AGY V +G + R+ P L++ DI+MP+ DG+E Sbjct: 3 SVLIVDDEEAIRRLIRSTLEQAGYHVREAADGKAGLSHYRQSPADLVIMDILMPDQDGLE 62 Query: 64 LARRATELDPDLKVMFITG---------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 P+ ++M ITG F VA + + L KPF ++ L++ V Sbjct: 63 SILTLRREFPEARIMAITGGSDMIGILNFLDVARMLGAR-----RTLQKPFEMQQLLDAV 117 Query: 115 N 115 Sbjct: 118 Q 118 >gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 244 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 7/117 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMD 60 Q IL+ ED+ + FL + L GY V + GA A D VR++P L++ DI++P ++D Sbjct: 4 EQHILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDID 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E+ RR + ++ +T VA D A +A L KPF +L+ V Sbjct: 64 GLEVCRRIRAAGEGMPILMLTARDEVA---DRVAGLDAGADDYLIKPFAFEELLARV 117 >gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1991 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ D+R ++ LG+ V + NG A ++VR +P L+L D++MP +DG Sbjct: 1620 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQPPDLVLADVMMPGLDGFG 1679 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 L RA D D + + I +A A + + + L KPF R+L+ V Sbjct: 1680 LV-RALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRV 1732 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR +L + L + V + G+ A R P SL+++D++MP ++G+E Sbjct: 605 RILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANPPSLIISDVMMPGVNGLE 663 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + RA + ++ ++ A + L KPF ++L+ V LLT+ Sbjct: 664 LVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTV 722 >gi|68637867|emb|CAI36072.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola] Length = 786 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 5/103 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL +DDD +R L G+ VV+ ++G A K+ +E +++TD MP M G Sbjct: 673 KHVLLVDDDDAVREVTQLLLSSLGHHVVTASSGHDALIKLTQE-IDIVVTDYSMPGMTGS 731 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +LA P+L V+ ITGFA +A KVL KPF Sbjct: 732 DLALEIYTRRPELPVIVITGFADIA----DVGLGTLKVLEKPF 770 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEV--VSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL ED + L AG + V ++ ASA ++ + F++++ D ++P G Sbjct: 7 KLLLVEDSIHDVELTLLTLENAGLSIDPVVVHSHASAEVALKRQTFNVIVCDYLLPSSSG 66 Query: 62 IELARRATELDPDLKVMFITG 82 +++ + A PD +F++G Sbjct: 67 LQVLQVAQAHAPDTPFIFLSG 87 >gi|239995253|ref|ZP_04715777.1| chemotaxis protein CheY [Alteromonas macleodii ATCC 27126] Length = 121 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ + L AGY V + +G A DK + + F+ +LTD MP MD Sbjct: 1 MSKHILVVDDSVSIRQMVEMTLKGAGYTVTTAQDGQDALDKCKSQQFNFVLTDQNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + R V+ +T A + A + KPF L++ R+L Sbjct: 61 GLTLIKNLRGLGTYSRTPVVMLTTEAGDDMKAKGKAAGATGWMVKPFDPNKLLDVTKRVL 120 >gi|229119146|ref|ZP_04248471.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3] gi|228664299|gb|EEL19815.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3] Length = 230 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+ Sbjct: 11 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMN 70 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G EL R +L+ + V+ +T AL+ D N + ++KPF ++ L+ V Sbjct: 71 GHELLREFRKLN-NTPVLMMT-----ALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVE 124 Query: 116 RLL 118 LL Sbjct: 125 ALL 127 >gi|242278609|ref|YP_002990738.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] gi|242121503|gb|ACS79199.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] Length = 142 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+LL +D+ + L + + G V +C N A DKV E F ++ D+ MP +D Sbjct: 1 MAEKVLLVDDEKEFVEGLAERMELRGMNVTACTNPQEALDKVDSETFDAIVLDLQMPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE + + P+++V+ ++G A V ++ + KP + L +++ + Sbjct: 61 GIEALKHIRKSRPEMQVILLSGHATVEKGIEAMKLGAMDFVEKPADINVLTDKIKK 116 >gi|209523776|ref|ZP_03272329.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|209495808|gb|EDZ96110.1| response regulator receiver protein [Arthrospira maxima CS-328] Length = 141 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L LG Y+V NG A V +P L+L DI MPEMDG ++ Sbjct: 11 ILIVDDTPDNLRVLSATLGDRDYDVQCAINGKLALMAVANQPPDLVLLDIKMPEMDGYQV 70 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 A ++ + ++ V+F++ V + A ++KPF + +++ V LTI+ Sbjct: 71 CEALKSQQKTAEIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQLTIR 129 >gi|206889466|ref|YP_002249856.1| putative Chemotaxis protein CheY [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741404|gb|ACI20461.1| putative Chemotaxis protein CheY [Thermodesulfovibrio yellowstonii DSM 11347] Length = 124 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD R+ + L GYEVV+ NG A K+ E +L+LTD+ MP MDGIE Sbjct: 2 KVLIVDDDKTTRKMISLILKSKGYEVVTAENGIEALQKLGLERINLILTDMNMPYMDGIE 61 Query: 64 LARRATELDPDL 75 ++ +PD+ Sbjct: 62 FIKQV-RANPDI 72 >gi|134094525|ref|YP_001099600.1| chemotactic response regulator [Herminiimonas arsenicoxydans] gi|133738428|emb|CAL61473.1| Putative chemotaxis protein CheY [Herminiimonas arsenicoxydans] Length = 121 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ ++ +L AGY+V +G DK + + F L+LTD MP MD Sbjct: 1 MTKTILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAQMQVFDLVLTDQNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R RA + ++ +T ++ + A L KPF + L V +++ Sbjct: 61 GFSLIRALRALPTYQKVPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120 >gi|77359575|ref|YP_339150.1| response regulator in two-component regulatory system [Pseudoalteromonas haloplanktis TAC125] gi|76874486|emb|CAI85707.1| putative response regulator in two-component regulatory system [Pseudoalteromonas haloplanktis TAC125] Length = 449 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +DD + + L + GYEV +C +G A ++ + F ++TD+ M EMDG+ Sbjct: 10 KVLLVDDDASLLKLLAIRIESKGYEVTTCESGLIALQILKSQVFDAVVTDLRMDEMDGMA 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS 92 L R+ P L V+ +T ++ PD+ Sbjct: 70 LHRQLQSRYPALPVIMMTAHGSI---PDA 95 >gi|163847239|ref|YP_001635283.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525080|ref|YP_002569551.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] gi|163668528|gb|ABY34894.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448959|gb|ACM53225.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] Length = 126 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 12/116 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I++ EDD RR L +GY+V+ +G A +K+ +++TD+ MP M Sbjct: 1 MPHTIMVVEDDAATRRLYRFLLRNSGYDVIEAEDGIDALEKLAVHDCDVVITDMNMPRMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDL 110 GIEL R + + V+ +T F PD+ KNA + L+KPF +L Sbjct: 61 GIELVRTLRQNQSQVYVILVTAFG----TPDTE--KNALRAGVNEYLTKPFDFDEL 110 >gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 228 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ + RFL L G+ NG AY+++ +E F ++L D+++P MDGIE+ Sbjct: 7 VLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIEI 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 RR + ++ ++ +T AV + ++KPF + +L+ + Sbjct: 67 CRRVRTV-SNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARI 115 >gi|302036583|ref|YP_003796905.1| sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] gi|300604647|emb|CBK40979.1| Sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] Length = 466 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 54/118 (45%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +D+ + L L GYEV +G A P L++ DI MP+MD Sbjct: 1 MSASILIVDDEVSILNSLSSILEDEGYEVSVAKSGIEALKLCAVSPPELMMLDIWMPDMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E RR EL P +VM ++G ++ + + KP L ++ V L Sbjct: 61 GLETLRRLRELVPQTQVMMMSGHGSIETAVKAIKLGAYDYIEKPLSLENVTLRVKHAL 118 >gi|300864563|ref|ZP_07109425.1| hypothetical protein OSCI_960001 [Oscillatoria sp. PCC 6506] gi|300337436|emb|CBN54573.1| hypothetical protein OSCI_960001 [Oscillatoria sp. PCC 6506] Length = 391 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L + GY NNG A + ++ + + +L D+ MPEMDG+E Sbjct: 136 RILLAEDNLVNQKVALRILERLGYRADVANNGLEALEALQHKTYDTVLMDVQMPEMDGLE 195 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 AR + P + I A A+ D A + +SKP +L+ +++ ++ Sbjct: 196 TARYINQHWPIQRRPRIIAMTANAMQGDREKCLEAGMDDYISKPIQFTELIQALSQCQSL 255 >gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 211 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L K +E+V NG A+ VR E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTKEEFEIVGEAGNGEEAFTFVRTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRIKQYDETIKILILSSFS 86 >gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM 18228] gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM 18228] Length = 228 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED++ + L L + GY+ +GA ++ F L+++D+++P+MDG EL Sbjct: 4 ILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHTFQLVISDVILPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +++P + ++ +T + + + KPF R+L + LL Sbjct: 64 CKEIRKINPSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|218705751|ref|YP_002413270.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UMN026] gi|293405687|ref|ZP_06649679.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1412] gi|298381369|ref|ZP_06990968.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1302] gi|300897713|ref|ZP_07116110.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|218432848|emb|CAR13742.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli UMN026] gi|291427895|gb|EFF00922.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1412] gi|298278811|gb|EFI20325.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1302] gi|300358553|gb|EFJ74423.1| response regulator receiver domain protein [Escherichia coli MS 198-1] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|170076628|ref|YP_001733267.1| two-component response regulator; transcriptional regulatory protein [Synechococcus sp. PCC 7002] gi|169887490|gb|ACB01198.1| two-component response regulator; transcriptional regulatory protein [Synechococcus sp. PCC 7002] Length = 223 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILLAEDD ++ +F+ L GY + +NG + + +RE + LL+ D +MP + Sbjct: 1 MKPHILLAEDDQNLAQFVASELRLEGYLITVAHNGIDSLNLIRENTYDLLIFDWLMPGLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 G++L R + ++ +T ++ D + NA ++KPF + +L+ VN Sbjct: 61 GLDLCLRLRSSGIETPILLLTAKDEIS---DRVSGLNAGADDYVTKPFSIEELLARVN 115 >gi|146343865|ref|YP_001208913.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146196671|emb|CAL80698.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 527 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE- 58 ++ IL+ EDD +R ++I + + GY ++ + A + + P LL TDI+MP Sbjct: 407 DETILIVEDDSLVREYVIAQIKRLGYTTLAASKADEALSLI-DSPARIDLLFTDIIMPGG 465 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M+G +LA A + P+LKV++ +G+ A+ +L+KP+ DL + L Sbjct: 466 MNGRQLAIEALKRRPNLKVLYTSGYTENAIVHHGRLDAGVLLLTKPYQSADLARMIRTAL 525 >gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 223 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ +L + LG+AGY V +G + E F L++ D+++P +DG E Sbjct: 2 RILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + V+F+T AV L KPF +L+ V LL Sbjct: 62 LL-RLIRRHGQVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLL 115 >gi|325275471|ref|ZP_08141399.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099402|gb|EGB97320.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas sp. TJI-51] Length = 396 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +VV+ + +++ + ++++DI MP +DG++ Sbjct: 12 QVILVDDDPHLRQALSQTLDLAGLKVVALGDAQGLAERIESDWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + D +L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 72 LLEQLHGRDAELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALR 129 >gi|311746236|ref|ZP_07720021.1| response regulator [Algoriphagus sp. PR1] gi|311302484|gb|EAZ80744.2| response regulator [Algoriphagus sp. PR1] Length = 535 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M+QK IL A+D+ D+ + I L + GYE+ + N+G A ++V F ++ D +MP Sbjct: 17 MSQKFNILWADDEIDLLKPHILFLEQKGYEITTANSGVDAIEEVEAHNFDVIFLDEMMPG 76 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G+E ++ + P + V+ IT + D+ K A L KP + ++ V +LL Sbjct: 77 MTGLETLQQIKLIKPQIPVVMITKSEEEHIMNDAIGGKIADYLIKPLNPNQILLSVKKLL 136 Query: 119 TIK 121 K Sbjct: 137 QNK 139 >gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 668 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ R F ++AL K G++V + +G A + PF L+L DI MP ++G++ Sbjct: 546 RILLAEDEPVNRIFTVRALTKLGHQVETAVDGREALALLGRAPFDLVLMDIQMPRLNGLD 605 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 R R+ ++ + + A A++ D A + ++KPF ++LV + R L Sbjct: 606 ATRMIRSGQVPGLSASIPVVALTAYAMDSDRERGLEAGMDEYVTKPFEPQELVAAMERAL 665 >gi|281356705|ref|ZP_06243196.1| response regulator receiver protein [Victivallis vadensis ATCC BAA-548] gi|281316832|gb|EFB00855.1| response regulator receiver protein [Victivallis vadensis ATCC BAA-548] Length = 137 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL+ +D + + FLI+AL + GY V+ NG A + P L+L D++MP+ Sbjct: 12 SETILIVDDHETIWDFLIEALQQLGYSVLLAENGLDAVEIYEANPKEIDLVLLDMIMPKA 71 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + + LDP+ K++ +GF + A D L KP L + + ++L Sbjct: 72 GGHQTFYKIRSLDPEAKILLSSGFVSEAEVHDLLQQGACGFLPKPHRLPAVARAIRQVL 130 >gi|237712721|ref|ZP_04543202.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229447235|gb|EEO53026.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1026 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+DD+R +L + L K Y V +C+NG A RE L+L+D++MPEM G Sbjct: 780 QRILIVEDNDDLRTYL-EGLLKEEYLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 838 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL + D++ I AL + + + + ++KPF + L + + Sbjct: 839 EL---CASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNI 895 Query: 118 L 118 L Sbjct: 896 L 896 >gi|239617405|ref|YP_002940727.1| response regulator receiver protein [Kosmotoga olearia TBF 19.5.1] gi|239506236|gb|ACR79723.1| response regulator receiver protein [Kosmotoga olearia TBF 19.5.1] Length = 134 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ +D++ + L GYEV++ +G K E+ L+L DI +PE+D Sbjct: 1 MKKKVLVIDDNEQNLYLITFLLESKGYEVITAIDGIKGIKKAIEKKPDLILLDIQLPELD 60 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A+R +D + ++ +T +A A + A + KPF + + E+ + L Sbjct: 61 GYEVAKRIKSIDEISHIPIVAVTSYAMPADEEKALAIGCVGYIKKPFFPENFIPEIEKYL 120 >gi|193216423|ref|YP_001997622.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089900|gb|ACF15175.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1111 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +I+L +D+ + K L + GY+V S + A++ +R+ P F L++TD+ MP + G Sbjct: 990 RIMLVDDETLIVNVQKKFLVQLGYQVASFTSSIDAFEALRDNPSAFDLVVTDLSMPMISG 1049 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA ++ PDL V+ TGF+ + K L KPF LVN + LL Sbjct: 1050 DKLAMEIKKIRPDLPVILCTGFSEKINEETAKNYGIDKFLIKPFGKAVLVNALRELL 1106 >gi|253699384|ref|YP_003020573.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774234|gb|ACT16815.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1193 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 +LL ED+D +R ++ L G + ++ +G A + R E S ++ D+ MP MDG + Sbjct: 1069 VLLVEDEDTVREIGVQMLESLGLKALTAKDGEEAVEVFRRGEEVSFVILDLTMPRMDGKQ 1128 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R LDP +KV+ +GF + D + + KP+ L +L + + + Sbjct: 1129 CLRELRRLDPAVKVIMSSGFNEQEIARDLDGGP-CGFIQKPYDLPELQQAIGKYI 1182 >gi|197118407|ref|YP_002138834.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] gi|197087767|gb|ACH39038.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] Length = 452 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 12/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L + L GY V NG+ A +++RE L+++DI+MPEMDG EL Sbjct: 14 ILIVDDSPTQAKLLEQLLAGEGYRVAIARNGSDALEQIRERQPDLVISDILMPEMDGFEL 73 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 RR ++ D ++ +T LN S+ + + +SKP+ + L+N + + Sbjct: 74 CRRVRGMESIKDTPIVLLT-----HLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRDV 128 Query: 118 L 118 L Sbjct: 129 L 129 >gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 241 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ N+G AY E ++ +L D+++PEMD Sbjct: 1 MSNEILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI +A + E + ++ +T + + KPF R++V V LL Sbjct: 61 GITVASKLRE-HKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|54301888|ref|YP_131881.1| sensor protein LuxN [Photobacterium profundum SS9] gi|46915308|emb|CAG22081.1| hypothetical sensor protein LuxN [Photobacterium profundum SS9] Length = 960 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 4 KILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K +L DD + R L++A L G VV ++G A +KV++EPF+L+L DI MP M GI Sbjct: 845 KTVLVVDDMQVNRMLVQAYLASEGITVVQASSGDEAIEKVKKEPFNLVLMDIQMPGMSGI 904 Query: 63 ELARRATELDPDLKVMFITG 82 E + L + ++ ++G Sbjct: 905 EATHQIRHLFDAIPIVALSG 924 >gi|88802299|ref|ZP_01117826.1| C4-dicarboxylate transport transcriptional regulatory protein [Polaribacter irgensii 23-P] gi|88781157|gb|EAR12335.1| C4-dicarboxylate transport transcriptional regulatory protein [Polaribacter irgensii 23-P] Length = 387 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 7/127 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +IL+ ED+ +RR L K + + Y V +G + +++ + L+L DI MP+MD Sbjct: 2 SRILIIEDEGAIRRVLKKIISEENDAYIVEEAADGLQGIEMIKDHDYDLILCDIKMPKMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----N 115 G+E+ + ++ P++ ++ I+G + ++ +SKP L L+N V N Sbjct: 62 GVEVLEKTKKIKPEIPIVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNALDN 121 Query: 116 RLLTIKN 122 ++L ++N Sbjct: 122 KVLVVEN 128 >gi|116750713|ref|YP_847400.1| response regulator receiver modulated metal dependent phosphohydrolase [Syntrophobacter fumaroxidans MPOB] gi|116699777|gb|ABK18965.1| response regulator receiver modulated metal dependent phosphohydrolase [Syntrophobacter fumaroxidans MPOB] Length = 502 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +I++ EDD + + L + L G+E V C +G A + +E F D+ +P+++G+ Sbjct: 2 RIVIIEDDPHLGKLLDECLHHLGHEKVQLCVSGREARLAMEQETFDCAFIDLKLPDINGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EL DP L V+ ++GF + ++ + L+KPF ++++V + R+ Sbjct: 62 ELLEEFKRRDPRLPVVMMSGFPTMHATIEAMQKGASDFLTKPFTMQNVVLALERI 116 >gi|332344002|gb|AEE57336.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UMNK88] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|330830132|ref|YP_004393084.1| Tricarboxylic transport regulatory protein [Aeromonas veronii B565] gi|328805268|gb|AEB50467.1| Tricarboxylic transport regulatory protein [Aeromonas veronii B565] Length = 224 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L +AL AG+ V +GA A +R E ++L + DI MP++DG+ Sbjct: 2 RLLLAEDNHELAHWLSRALTSAGFAVDWVADGAQADHLLRHEQYALAVLDIEMPKLDGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T AV LN ++ L+KPF L +L + LL Sbjct: 62 VLGRLRSRGQGVPVLLLTARGAVEERICGLNAGAD-----DYLAKPFDLGELDARLRALL 116 >gi|293410584|ref|ZP_06654160.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli B354] gi|291471052|gb|EFF13536.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli B354] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETYCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|257482848|ref|ZP_05636889.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 245 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M Sbjct: 118 GETVLIVDDEPSVRMLVAEVITGLGYNCLEAGDAQSGLQILQSDTRIDLLISDIGLPGGM 177 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 178 NGREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 236 >gi|225408038|ref|ZP_03761227.1| hypothetical protein CLOSTASPAR_05259 [Clostridium asparagiforme DSM 15981] gi|225042471|gb|EEG52717.1| hypothetical protein CLOSTASPAR_05259 [Clostridium asparagiforme DSM 15981] Length = 268 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + I++ +++ MR+F I+ E+V N A D R L DI MP+M+G Sbjct: 2 RTIVVDDEELSMRQFEIECAQVREIELVGRFTNPLEALDYARNNTVDFALLDIEMPQMNG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 IELARR E+ D+ ++F++G++ L D+ K+ + KP+ D+++ +NR Sbjct: 62 IELARRLREIKRDMIIIFVSGYSDYVL--DALKMKSDYYVFKPYSREDILDALNR 114 >gi|224370879|ref|YP_002605043.1| two-component response regulator (CheY-like receiver domain and a winged-helix DNA-binding domain) [Desulfobacterium autotrophicum HRM2] gi|223693596|gb|ACN16879.1| two-component response regulator (CheY-like receiver domain and a winged-helix DNA-binding domain) [Desulfobacterium autotrophicum HRM2] Length = 147 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EM 59 M K+L+ +D+ D +IK L K G V ++G +A +K++E F ++L DI M M Sbjct: 1 MEIKVLVVDDEIDFLETIIKRLNKKGINTVGVSSGEAAVEKIKESAFDVILLDIKMAGGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DGI+ + L P +V+ +TG V + + + KP DL ++ + Sbjct: 61 DGIDTLQEIKRLRPLAQVILLTGHGTVESSVEGMKLGAFDYVLKPARFEDLCEKITK 117 >gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 7/113 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KILL ED++ M F+ L GY+V +G A +KV + L+L DI++P ++G Sbjct: 3 NFKILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMIPGLNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLV 111 IE+ RR + + ++ +T + V+ L D A L+KPF + +L+ Sbjct: 63 IEVCRRIRQFSC-VPIIMLTAKSDVSDKVLGLDVGAN---DYLTKPFAIEELL 111 >gi|169829969|ref|YP_001700127.1| response regulator [Lysinibacillus sphaericus C3-41] gi|168994457|gb|ACA41997.1| Response regulator [Lysinibacillus sphaericus C3-41] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD +R+ ++ L K + V+ +NG A D E F LL+ D +MP++ G+E Sbjct: 2 KILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGLE 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ + ++ +T + + DS A L KPF + +L+ + +L Sbjct: 62 VCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGAD---DYLVKPFKMEELLARIRAVL 116 >gi|148556802|ref|YP_001264384.1| integral membrane sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148501992|gb|ABQ70246.1| integral membrane sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 661 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 ILL EDD ++ L + G+ V +C +G A + E+ L+LTD++MP M G Sbjct: 536 SILLVEDDPRVQASTRAGLTELGHIVRACASGEEALAMLAEDGGVDLVLTDVMMPGMTGP 595 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + P++ +F+TG+ A D A +VL KPF + L N V R + Sbjct: 596 ELIAAISRDYPEIAALFVTGYVGEAGQSDDFA--GYEVLRKPFTIAALGNAVARAI 649 >gi|108757358|ref|YP_632748.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|34329394|gb|AAQ63901.1| mutant NtrC-like activator [Myxococcus xanthus] gi|108461238|gb|ABF86423.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 457 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D +M + L + L GY+V GA A ++R + +L D+ M ++DG + Sbjct: 6 RVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQDVDGFD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A +LDPDL V+ +T F V ++ +KPF L ++ + R L Sbjct: 66 VLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERAL 120 >gi|95928222|ref|ZP_01310970.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135493|gb|EAT17144.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 239 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 11/121 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 +ILL ED+ + + LI L + GYEV+ G A + +E FSL + D ++P ++DG+ Sbjct: 7 RILLVEDEQHIAQGLIFNLQQEGYEVIHAITGEEALHSLDKESFSLAILDRMLPGKIDGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLRDLVNEVNRL 117 E+ R DP L V+ +T A+N + + L KPF L +L+ V + Sbjct: 67 EICRHIRRADPQLPVLMLT-----AMNREQDRVAGLGEGADDYLGKPFSLDELLLRVAGM 121 Query: 118 L 118 L Sbjct: 122 L 122 >gi|296536415|ref|ZP_06898515.1| sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] gi|296263265|gb|EFH09790.1| sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] Length = 1111 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 54/116 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD R + L G+ V +GA R+E L L DI MP M G EL Sbjct: 913 VLVADDDAAHRALVRDLLEPLGFVVREAADGAECLALARQEAPDLYLLDIAMPGMTGWEL 972 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 A+R E + + + + A+ L P + VL KP L L+ ++ LL + Sbjct: 973 AQRLREAEGERVPILMVSANALELAPPREGQHHDDVLPKPLSLPALLEKIGTLLGV 1028 >gi|290998694|ref|XP_002681915.1| multi-sensor hybrid histidine kinase [Naegleria gruberi] gi|284095541|gb|EFC49171.1| multi-sensor hybrid histidine kinase [Naegleria gruberi] Length = 702 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI+LAED+ R+ LIK G + S +G D + E L++TD+ MP ++G+E Sbjct: 590 KIILAEDNFVNRKVLIKLFESLGQSLDSVRDGKELVDSFKPEQHKLIITDMHMPILNGLE 649 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ E P+ K++ IT A +N S KV+SKP DL ++ L Sbjct: 650 ASKVIREKHPNSKIVMIT--ADALINISSYLEVVDKVISKPCSKDDLKKVISEYL 702 >gi|226954090|ref|ZP_03824554.1| nitrogen regulation protein NR(I) [Acinetobacter sp. ATCC 27244] gi|294650303|ref|ZP_06727671.1| nitrogen assimilation regulatory protein [Acinetobacter haemolyticus ATCC 19194] gi|226835131|gb|EEH67514.1| nitrogen regulation protein NR(I) [Acinetobacter sp. ATCC 27244] gi|292823833|gb|EFF82668.1| nitrogen assimilation regulatory protein [Acinetobacter haemolyticus ATCC 19194] Length = 499 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V + +A +++ ++ ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHDDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLSKVKNSHPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|189465171|ref|ZP_03013956.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM 17393] gi|189437445|gb|EDV06430.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM 17393] Length = 1391 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR + I+ L Y + +G A + V++ L+++D++MP MDG+ Sbjct: 1140 ETILIVEDNKDMRSY-IRTLLVGDYRLFEAGDGQEALEIVQKHTIDLIVSDLMMPVMDGM 1198 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL+RR E +L I AL D ++ ++ L KPF L + + Sbjct: 1199 ELSRRIKE---NLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNI 1255 Query: 118 LTIK 121 L ++ Sbjct: 1256 LNLR 1259 >gi|168703591|ref|ZP_02735868.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 634 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 ++ +LL ED++ +RR L ++GY V+ +GA+ P LL+T +VMP + Sbjct: 513 HETVLLVEDEEMVRRMTRLVLERSGYTVLEAGDGAAGVAAAERHAGPIHLLITGLVMPHL 572 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A R L ++V+F +G+ S P L KPF L L ++V +L Sbjct: 573 SGRQVAERVARLKKGVRVLFTSGYTEDTPTHPSVGPAACDFLHKPFSLDALKDKVREVL 631 >gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 847 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ F L K G+ V + +G A +RE+ F L+L D+ MPEMDG E Sbjct: 727 RILLAEDNRINSLFAAYLLEKLGHSVRAVASGVQALTALREDRFDLVLMDVRMPEMDGAE 786 Query: 64 LAR--RATEL-DPDLKVMFITGFA 84 R RA E DP + ++ +T +A Sbjct: 787 ATRRIRAGEAGDPKIPIVALTAYA 810 >gi|332184987|ref|ZP_08386736.1| response regulator [Sphingomonas sp. S17] gi|332014711|gb|EGI56767.1| response regulator [Sphingomonas sp. S17] Length = 447 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 63/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R+ L ++ AG +V + + +A + + ++++DI MP +DGIE Sbjct: 11 RVLLVDDDTVLRQALAQSFELAGIDVEAHGDPLAALAAITPDFPGMVVSDIRMPGIDGIE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 LARR +D ++ V+ +TG V + + ++KPF L+ R L ++ Sbjct: 71 LARRVAAIDAEIPVILMTGHGDVPMAVAALKQGVFDFVAKPFAADHLIASAGRALEMRR 129 >gi|304317956|ref|YP_003853101.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779458|gb|ADL70017.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ I L ED+ + L K L + GY V + +G++A D++++ P L + DI++P++D Sbjct: 1 MSRNIYLVEDEKSLNLLLQKYLEREGYSVTTFFDGSTAMDRIKDLP-DLWILDIMLPDVD 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + + + V+F++ + L D LSKPF R+LV Sbjct: 60 GYELIKAIKDHNKSTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELVIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|322421474|ref|YP_004200697.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127861|gb|ADW15421.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 669 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 N+ ILLAEDD +R L GYEV+ NG A + E+ L++ +++MP+M Sbjct: 549 NETILLAEDDAQVRIVTRMTLETFGYEVIEAANGKEAIARFMEHEDEIKLIILNVIMPKM 608 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G + +L P +F +G+ A + + ++KP DL+ +V LL Sbjct: 609 NGKDAYDEIRKLRPGAMALFTSGYPADVFHQEDVVENGFHFIAKPSTPTDLLRKVRGLL 667 >gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 241 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AGYEV S +G A E L++ D+++P+MDG Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ D+ ++F+T + + ++KPF L ++V +N +L Sbjct: 71 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAIL 125 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + L +AL +AGY V +NG A+ + + ++LLL DI +P+MDG+ Sbjct: 2 RILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGLA 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR E L V+ +T A + L D ++KPF L + V Sbjct: 62 VLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADD-------YMTKPFDLPEFEARVRA 114 Query: 117 LL 118 L+ Sbjct: 115 LI 116 >gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ +DD + R + L AG++ ++ ++GA+A R E L++ D+++P++D Sbjct: 1 MPQRILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G +L RA DP + M I A + D ++KPF+ R++V V + Sbjct: 61 GADLT-RAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|114777121|ref|ZP_01452141.1| Multi-sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] gi|114552642|gb|EAU55102.1| Multi-sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] Length = 600 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDM-RRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 +K LL DD D+ R L + L GY V+ NG K E + +L+++DIVMP + Sbjct: 457 KKTLLVIDDSDIVRATLSQLLQSLGYTVLLAKNGRRGVKKFYEYSDQIALVISDIVMPVL 516 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG E+ P++ +F+TG+ + D+ ++ KPF + L V+ LL Sbjct: 517 DGPSAVTLMREIRPEIPAIFLTGYTNDNVLDDTYDNHLTVIMEKPFSIVTLSQTVHNLL 575 >gi|108763462|ref|YP_630279.1| response regulator [Myxococcus xanthus DK 1622] gi|108467342|gb|ABF92527.1| response regulator [Myxococcus xanthus DK 1622] Length = 927 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL + D R + +L KAG+ V + +G A +KV+ P L+L D MPEMDG Sbjct: 4 QHLLLVDGDAKSLRVMEVSLKKAGFSVTTAIHGKDALEKVQISPPDLVLADTKMPEMDGF 63 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + ++ E + +F+T +V L+KP +++++V V +L Sbjct: 64 ELCKTLKSDERFKFIPFVFLTSQKSVEFKVRGLELGGDDYLTKPIYIKEIVTRVKMIL 121 >gi|91203574|emb|CAJ71227.1| hypothetical two-component response regulator protein [Candidatus Kuenenia stuttgartiensis] Length = 247 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 55/113 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D+ D I GY + ++G A + V+E PF L+L DI MP M+G++ Sbjct: 12 HILIVDDNADFCTNCIDIFESKGYSATAVHDGFDAIEAVKENPFDLVLMDIKMPVMNGVD 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + +++P L V+ I+ +A L ++ + KP + L + + Sbjct: 72 TYKTLKQINPLLPVIMISAYAVEGLLVNALREGAFAIFHKPLNFGKLFSTIEH 124 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 9/118 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +DD+D+ L L + GY V + N+G++A RE F ++L D+ +P M+G++ Sbjct: 132 IMVVDDDNDICESLSDLLHEKGYRVKTANDGSTAVQMSRENLFDVILLDMKLPTMNGLDA 191 Query: 65 ARRATELDPDLKVMFITGFAAVALN-PDSNAPKNAKV-LSKPFHLRDLVNEVNRLLTI 120 ++ P + V+ ITG+ N D +NA V L KP +++RLL I Sbjct: 192 YLAIRDIRPSVVVILITGYRNELRNLVDRALQRNACVCLDKPL-------DIDRLLDI 242 >gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 234 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 56/111 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + R L LG GYE N G K E+ + L+L D+++PE++G+E Sbjct: 3 KILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVMLPELNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + +R + + + V+ +T + + ++KPF +L+ + Sbjct: 63 VLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARI 113 >gi|323967662|gb|EGB63074.1| sigma-54 interaction domain-containing protein [Escherichia coli M863] gi|327252489|gb|EGE64148.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli STEC_7v] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|310640280|ref|YP_003945038.1| two component transcriptional regulator, arac family [Paenibacillus polymyxa SC2] gi|309245230|gb|ADO54797.1| Two component transcriptional regulator, AraC family [Paenibacillus polymyxa SC2] Length = 519 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 11/87 (12%) Query: 4 KILLAEDDDDMRRFLIKAL------GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVM 56 K+LL +D+ R +++ + GKAG +V + NG AYD+++ P +++DI M Sbjct: 3 KVLLVDDE----RMILEGISQVVDWGKAGTRLVGTARNGIEAYDQIQASPPDFVISDISM 58 Query: 57 PEMDGIELARRATELDPDLKVMFITGF 83 P +DGI L + TE PD++ + ++G+ Sbjct: 59 PGLDGIGLVAKTTEHFPDVRFILLSGY 85 >gi|304312700|ref|YP_003812298.1| Nitrogen assimilation response regulator [gamma proteobacterium HdN1] gi|301798433|emb|CBL46658.1| Nitrogen assimilation response regulator [gamma proteobacterium HdN1] Length = 510 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 58/117 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I + +DD +R L KAL +AG V + + +R + + +L+DI MP M G+ Sbjct: 4 EAIWVIDDDKSIRWVLEKALKQAGMNVTVFDRADGVLEALRTQQPAAILSDIRMPGMSGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL + + P L V+ +T + + S + L KPF L D ++ V R LT Sbjct: 64 ELLAKVHKQYPQLPVIIMTAHSDLDSAVQSYQGGAFEYLPKPFDLDDAISLVQRALT 120 >gi|300724027|ref|YP_003713342.1| transcriptional regulatory protein tctD [Xenorhabdus nematophila ATCC 19061] gi|297630559|emb|CBJ91224.1| Transcriptional regulatory protein tctD [Xenorhabdus nematophila ATCC 19061] Length = 221 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED D+ +L KAL +G+ V +G A ++ E ++LL+ D+ +P +DGI Sbjct: 2 RLLLVEDHPDLSHWLQKALSTSGFVVDLAEDGIMADQLLQTESYALLILDVALPRLDGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + +L V+ +T + V L+KPF ++L + LL Sbjct: 62 LLLRLRKRGQNLPVLLLTAKSGVTDRVKGLNSGADDYLTKPFDFQELEARIRALL 116 >gi|222055710|ref|YP_002538072.1| diguanylate cyclase [Geobacter sp. FRC-32] gi|221564999|gb|ACM20971.1| diguanylate cyclase [Geobacter sp. FRC-32] Length = 460 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ EDD R L G+ V V+C+ G A + +R ++L++TD+VMP++ G Sbjct: 2 ERILVVEDDSFFREVFADLLRDDGFAVDVACS-GEKALEMLRSSEYALVVTDLVMPDITG 60 Query: 62 IELARRATELDPDLKVMFITGFA 84 ++L + + DP + V+ +TG A Sbjct: 61 LDLLSKVKQFDPSIDVILVTGHA 83 >gi|323188052|gb|EFZ73347.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli RN587/1] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|323171898|gb|EFZ57542.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli LT-68] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|322376991|ref|ZP_08051484.1| DNA-binding response regulator [Streptococcus sp. M334] gi|321282798|gb|EFX59805.1| DNA-binding response regulator [Streptococcus sp. M334] Length = 251 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 7 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIVLTDINMP 66 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +A+ L D L KPF +D+ Sbjct: 67 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAIKLGVDD-------YLLKPFSRQDI 119 >gi|300863678|ref|ZP_07108612.1| putative two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300338310|emb|CBN53758.1| putative two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 424 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 9/125 (7%) Query: 1 MNQKILLAEDDDDM-----RRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDI 54 M KIL+ +D+ + +RF K K E V +NG A +K+ E P F L+LTDI Sbjct: 1 MTAKILVVDDEQLLEYVIQQRFRQKIRVKE-IEFVFAHNGREALEKIAESPPFDLVLTDI 59 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNE 113 MPEMDG+ L + +E+D LK + I+ + + N + + A L+KP +D+ Sbjct: 60 NMPEMDGLTLLEKLSEIDNTLKAVVISAYGDMQ-NIRTAMNRGAFDFLTKPIDFQDMEIT 118 Query: 114 VNRLL 118 + R L Sbjct: 119 IQRAL 123 >gi|299769698|ref|YP_003731724.1| response regulator [Acinetobacter sp. DR1] gi|298699786|gb|ADI90351.1| response regulator [Acinetobacter sp. DR1] Length = 497 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V + +A +++ + ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLSKVKNTHPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|331663726|ref|ZP_08364636.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA143] gi|284922212|emb|CBG35294.1| acetoacetate metabolism regulator (two-component system response regulator) [Escherichia coli 042] gi|331059525|gb|EGI31502.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA143] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|256839824|ref|ZP_05545333.1| two-component sensor histidine kinase [Parabacteroides sp. D13] gi|256738754|gb|EEU52079.1| two-component sensor histidine kinase [Parabacteroides sp. D13] Length = 968 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 13/125 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ D+ ++ + L A Y+++ NGA + E+ L+LTD++MPEMD Sbjct: 715 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 773 Query: 61 GIELARRA--TELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL RR +E+ + ++ IT + L ++A L KPF+ +L Sbjct: 774 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADA-----YLEKPFNAEELNIR 828 Query: 114 VNRLL 118 + +LL Sbjct: 829 ITKLL 833 >gi|85857912|ref|YP_460114.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85721003|gb|ABC75946.1| signal transduction histidine kinase with receiver domain [Syntrophus aciditrophicus SB] Length = 615 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL +D+ + R + L + GY++V+ + A + R P F L++TD+ MP+M Sbjct: 494 ERILFVDDEKCLVRIAEQLLTRLGYKIVASMSSIEALEAFRSRPESFDLVITDLNMPDMT 553 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI+L+R + D+ ++ TGF+ + + + + KPF + + + +L Sbjct: 554 GIDLSRELLHIRADIPIILCTGFSEQIIEEKARKLGIREFIFKPFIMSTMAQVIRDVLEC 613 Query: 121 K 121 + Sbjct: 614 R 614 >gi|74312742|ref|YP_311161.1| acetoacetate metabolism regulatory protein AtoC [Shigella sonnei Ss046] gi|73856219|gb|AAZ88926.1| response regulator of ato [Shigella sonnei Ss046] gi|323168621|gb|EFZ54301.1| acetoacetate metabolism regulatory protein atoC [Shigella sonnei 53G] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|148264474|ref|YP_001231180.1| integral membrane sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146397974|gb|ABQ26607.1| integral membrane sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 656 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 N+ +L+AEDD + + LGK GY ++ +G A K E + ++L D++MP+ Sbjct: 536 NETLLVAEDDKLVMGLTREILGKHGYRIIEAADGEDAVAKFTENADRIEMVLLDVIMPKK 595 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E+ ++ P +K +F++G+ + + +SKP +L++++ +L Sbjct: 596 NGKEVFEEIKKIKPGIKTLFMSGYTNDIIAGKGVIEEGINFISKPVQPGELLHKIKEVL 654 >gi|186682208|ref|YP_001865404.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464660|gb|ACC80461.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 371 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L + GYEV S NG+ A ++ +P L+L DI MP M+G E+ Sbjct: 11 ILIVDDTLDNLRLLSAMLTEQGYEVRSVTNGSMALIGIQAQPPDLILLDITMPGMNGYEV 70 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R + ++ V+FI+ V + + ++KPF + ++V + L + Sbjct: 71 CQRLKSNPQTQEIPVIFISALNEVFDKVKAFSVGGVDFINKPFQIEEVVARMEHQLKL 128 >gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] Length = 656 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + L++ L K GY+ +NG + + + ++L DI MP+MDG E Sbjct: 539 ILLAEDNAVNQMVLLQMLRKIGYQADLASNGFDVLAALDRQAYDVVLMDIQMPDMDGFEA 598 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 RR P +K I A ALN D A + LSKP + DL Sbjct: 599 TRRILARFPKMKRPRIIALTAHALNGDRERCLEAGMDGYLSKPVKIEDL 647 >gi|262282112|ref|ZP_06059881.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] gi|262262566|gb|EEY81263.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + R ++ AL GY+V S NG A + + +++++ DI+MP M G+E Sbjct: 3 RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTYNVIILDIMMPIMTGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + V+ +T A V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRATGNTTHVIMLTAMAEVDDRVTGLDAGAD---DYLTKPFSLKELL 110 >gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22] gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces scabiei 87.22] Length = 241 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 19 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 78 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 79 VARRLRAEGHTVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 133 >gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 221 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + + L +GY VV+ NG A + + LL+TDIVMPEMDG +L Sbjct: 5 ILIVDDEPGISLSVSDYLQLSGYSVVTAANGKQALEMLNRYQPHLLITDIVMPEMDGYDL 64 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ + P + V+F+TG LSKPF L +L V LL Sbjct: 65 VRQVRQ-QPAFRLLPVIFLTGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLL 120 >gi|158521660|ref|YP_001529530.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510486|gb|ABW67453.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 479 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 58/116 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD+ + FL + + GY+V +C G A + ++ F L+L D MP+++G+++ Sbjct: 4 ILIIDDDEGLVHFLRRFFQRKGYDVTACLTGREALAAIPKQSFDLILLDYKMPDINGLDM 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ V+ +T + L ++ L+KPF +DL V L + Sbjct: 64 LAEIRRIEIKTPVILMTAYGTTDLAIETMKLGAYDYLTKPFDRKDLSRIVTEALAV 119 >gi|153868898|ref|ZP_01998627.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074527|gb|EDN71372.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 378 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D D R LI L + GY+V NG A R P L+L DI+MPEMDG Sbjct: 4 ETILVVDDLADNLRVLIGILSQQGYKVRPARNGQQALLMARTSPPDLILLDIMMPEMDGY 63 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + +A + + ++FI+ V + + ++KPF +++ V L + Sbjct: 64 EVCQQLKADQKTHHIPIIFISALNEVLDKIKAFSLGAVDYITKPFQAEEVLARVETHLKL 123 >gi|197119319|ref|YP_002139746.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088679|gb|ACH39950.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 642 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ +LL EDD+ +R L GY V+ G A + E+ LLLTD+VMP + Sbjct: 517 NETVLLVEDDETVRTMTRLLLQHNGYRVLCAREGEEALNIFAEQGDGVDLLLTDLVMPRL 576 Query: 60 DGIELARRATELDPDLKVMFITGFAA 85 +G EL R PD +F++G+ A Sbjct: 577 NGTELGLRIHAQRPDFPTIFMSGYPA 602 >gi|88707342|gb|ABD49453.1| two-component-like hybrid sensor histidine kinase 2 [Cryptococcus neoformans var. grubii] Length = 1691 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 5/117 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ ED+ DMR + I+ L V+ +NG AY+ + P +L+L+D++MP++ G Sbjct: 950 NDIVLIVEDNVDMREY-IRQLFAPYCTVLEASNGEQAYNMATQNPPNLILSDVLMPKLSG 1008 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNA--KVLSKPFHLRDLVNEVN 115 +EL +R PD +++ + +A+A + A N L+KPF ++L+ V+ Sbjct: 1009 MELLQRIRS-HPDTRIVPMVLISAIAGDESRVEALLNGADDYLAKPFKPKELIARVH 1064 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 18/133 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-------------EPFSL 49 + +L+ ED+ + L + L KAG +NG A + +RE F + Sbjct: 1544 EHVLIVEDNLINQTVLKRQLVKAGLSCNVASNGLEALNVIREVHRQHRRGGPNRKRLFDV 1603 Query: 50 LLTDIVMPEMDGIELAR--RATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKP 104 +L D+ MP MDGI R R +E L V+ +TG A + A V+ KP Sbjct: 1604 VLMDLEMPVMDGITAVREIRQSEAAGTLGRNMVIALTGNARQGQIDHALASGFDDVVIKP 1663 Query: 105 FHLRDLVNEVNRL 117 + L DL+N++ + Sbjct: 1664 YILVDLLNKIKSM 1676 >gi|94497265|ref|ZP_01303837.1| sensory box histidine kinase/response regulator [Sphingomonas sp. SKA58] gi|94423370|gb|EAT08399.1| sensory box histidine kinase/response regulator [Sphingomonas sp. SKA58] Length = 540 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + AL G+ + +G + + E LL+TD+ +P ++ Sbjct: 420 ETVLIIDDEPSVRMLVSDALTDLGFRCLEAGDGPAGLRLLESEARIDLLVTDVGLPGGLN 479 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A L DL+++FITG+A A+ + +VL+KPF + DL V LL Sbjct: 480 GRQVAEAARGLRADLRILFITGYAENAVLNHGHIEPGMEVLTKPFAVDDLRRRVATLL 537 >gi|85858961|ref|YP_461163.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85722052|gb|ABC76995.1| signal transduction histidine kinase with reciever domain protein [Syntrophus aciditrophicus SB] Length = 649 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-MDG 61 + IL+ +D + R + L + GY V + G +A D +R + L++ D++MP MDG Sbjct: 531 ESILVVDDIPEQREMALSMLKRLGYRVDAVPGGEAAVDYLRSQAMDLVVLDMIMPPGMDG 590 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +E R E++P K + ++GF+ + + KP+ L +L Sbjct: 591 LETYERILEINPAQKAIIVSGFSRTERVEKAQKLGAGAYVRKPYILENL 639 >gi|55821369|ref|YP_139811.1| response regulator, truncated [Streptococcus thermophilus LMG 18311] gi|55823293|ref|YP_141734.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55737354|gb|AAV60996.1| response regulator (homolog to RR08 Spn) uncoupled, truncated [Streptococcus thermophilus LMG 18311] gi|55739278|gb|AAV62919.1| response regulator (homolog to RR08 Spn) uncoupled, truncated [Streptococcus thermophilus CNRZ1066] Length = 120 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 7/120 (5%) Query: 1 MNQKILLAEDDDDM--RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + ILL +++ D+ R FL +AGY+V+ ++G + R++ L++TDI+MP Sbjct: 1 MKKTILLVDNEIDVQNRYFL-----QAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPN 55 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M+G + + P+ +F T + + ++KPF LR+LV VN +L Sbjct: 56 MNGYDFISEVQYIAPNQPFLFTTAKTSEQDKIYGLSLGGYDFIAKPFSLRELVLRVNNIL 115 >gi|86134089|ref|ZP_01052671.1| two component, sigma54 specific, transcriptional regulator [Polaribacter sp. MED152] gi|85820952|gb|EAQ42099.1| two component, sigma54 specific, transcriptional regulator [Polaribacter sp. MED152] Length = 387 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K + + Y V +G + ++ + L+L DI MP+MDG Sbjct: 3 KILIIEDEAAIRRVLKKIISEENDAYNVEEAEDGLQGMEMIKNNDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ +A ++ P++ ++ I+G + ++ +SKP L L+N V L Sbjct: 63 VEVLEKAKKIKPEVPIVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 119 >gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 235 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL +D++ + R L L K G+ +G A EPF +L DI++P +D Sbjct: 1 MTKQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ + A+ L D L+KPF R+LV Sbjct: 61 GIEVCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELVAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|237716479|ref|ZP_04546960.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444126|gb|EEO49917.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 853 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+D++R +L+ +L Y V +C NG A ++E L+L+DI+MPEM G Sbjct: 587 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEALIIIKEYWPELVLSDIMMPEMRGD 645 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D+++ I AL ++N + L KPF ++ L + L Sbjct: 646 EL---CVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANL 702 Query: 118 L 118 L Sbjct: 703 L 703 >gi|215487439|ref|YP_002329870.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli O127:H6 str. E2348/69] gi|215265511|emb|CAS09913.1| fused response regulator of ato operon, in two-component system with AtoS [Escherichia coli O127:H6 str. E2348/69] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|110597241|ref|ZP_01385529.1| Response regulator receiver [Chlorobium ferrooxidans DSM 13031] gi|110341077|gb|EAT59545.1| Response regulator receiver [Chlorobium ferrooxidans DSM 13031] Length = 119 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +DD D+R+F++ L + + V +G ++E S+++TD++MPE +G+ Sbjct: 2 KILVIDDDGDVRKFILTTLTRENHTVFEAGDGNQGLQLLQEHRDISVVITDLIMPEKEGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPD-----SNAPKNAKVLSKPFHLRDLVNEVNRL 117 E L P +K++ I+G V PD ++ L KPF ++L++ + L Sbjct: 62 ETIIEIRSLLPAIKILAISGGGKVG--PDNYLVLADTLGANSTLKKPFTGKELLDALRNL 119 >gi|148264075|ref|YP_001230781.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397575|gb|ABQ26208.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 447 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 49/105 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ EDD+ R FL L G+EV +G +R E F L+++D+ MP Sbjct: 1 MTGRILIVEDDETFRSFLRTILEDVGHEVQEAGDGLKGLRLLRRENFDLVISDLKMPGKS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G+EL R + + +F+T F V + L+KP Sbjct: 61 GLELFRETRQDSSPPQFIFLTAFGKVEEAVSAIKEGAVDFLTKPL 105 >gi|310823438|ref|YP_003955796.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|309396510|gb|ADO73969.1| Response regulator [Stigmatella aurantiaca DW4/3-1] Length = 929 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL + D R + +L KAG+ V + +G A +KV+ P L+L D MPEMDG Sbjct: 4 QHLLLVDGDAKSLRVMEVSLKKAGFSVTTAIHGKDALEKVQISPPDLVLADTKMPEMDGF 63 Query: 63 EL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL A ++ E + +F+T +V L+KP +++++V V +L Sbjct: 64 ELCKALKSDERFKFIPFVFLTNQKSVEFKVRGLELGGDDYLTKPIYIKEIVTRVRMIL 121 >gi|331647875|ref|ZP_08348967.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M605] gi|281179312|dbj|BAI55642.1| two-component response regulator [Escherichia coli SE15] gi|330912051|gb|EGH40561.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli AA86] gi|331043599|gb|EGI15737.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M605] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|209523935|ref|ZP_03272487.1| response regulator receiver modulated serine phosphatase [Arthrospira maxima CS-328] gi|209495607|gb|EDZ95910.1| response regulator receiver modulated serine phosphatase [Arthrospira maxima CS-328] Length = 394 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L + L K GY+VV +NG +K +E +L++ D +MP + GIE Sbjct: 19 KILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTGIE 78 Query: 64 LARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R+ + P+L + +T AV LSKP + +L V Sbjct: 79 VCRQVKAM-PELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARV 131 >gi|196032134|ref|ZP_03099548.1| transcriptional regulatory protein VanRB [Bacillus cereus W] gi|218904325|ref|YP_002452159.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus cereus AH820] gi|195994885|gb|EDX58839.1| transcriptional regulatory protein VanRB [Bacillus cereus W] gi|218538575|gb|ACK90973.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus cereus AH820] Length = 220 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+ Sbjct: 1 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G EL R +L+ + V+ +T AL+ D N + ++KPF ++ L+ V Sbjct: 61 GHELLREFRKLN-NTPVLMMT-----ALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVE 114 Query: 116 RLL 118 LL Sbjct: 115 ALL 117 >gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37] gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37] Length = 228 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 15/122 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L AL +AG+ V+ +GA A E L++ DI +PEMDG E Sbjct: 2 KILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGLPEMDGFE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D+ V+F+T + + D ++KPF R++V V Sbjct: 62 VCRR-LRARSDVPVLFLTARDDEVDRIVGLEMGADD-------YVTKPFSPREVVARVAA 113 Query: 117 LL 118 +L Sbjct: 114 IL 115 >gi|163846310|ref|YP_001634354.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524071|ref|YP_002568542.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] gi|163667599|gb|ABY33965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447950|gb|ACM52216.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] Length = 123 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD ++ L AL AGY+VV +G + SL+++DI+MP MDG+E Sbjct: 8 IFIIDDDLGLQNILSIALRNAGYDVVLARDGLEGLRMLEHLSPSLVISDIMMPNMDGVET 67 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +R E D + + IT D A + A ++ KPF + LV ++R L+ Sbjct: 68 FQRIKERLQDNGIPIFLITALNRKPWFADLEA-EGAVIIQKPFEVHHLVELIDRTLS 123 >gi|16130157|ref|NP_416724.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli str. K-12 substr. MG1655] gi|89109039|ref|AP_002819.1| fused response regulator of ato opeon, in two-component system with AtoS [Escherichia coli str. K-12 substr. W3110] gi|157161704|ref|YP_001459022.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli HS] gi|170081840|ref|YP_001731160.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator and sigma 54 interaction protein [Escherichia coli str. K-12 substr. DH10B] gi|188494177|ref|ZP_03001447.1| sigma-54 dependent response regulator AtoC [Escherichia coli 53638] gi|238901395|ref|YP_002927191.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli BW2952] gi|253772856|ref|YP_003035687.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162232|ref|YP_003045340.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli B str. REL606] gi|256022097|ref|ZP_05435962.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp. 4_1_40B] gi|300903602|ref|ZP_07121520.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300931434|ref|ZP_07146763.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300948915|ref|ZP_07162977.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300958905|ref|ZP_07171009.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|301024238|ref|ZP_07187933.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301306547|ref|ZP_07212610.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301647689|ref|ZP_07247483.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307138879|ref|ZP_07498235.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli H736] gi|312973526|ref|ZP_07787698.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 1827-70] gi|331642850|ref|ZP_08343985.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli H736] gi|1168553|sp|Q06065|ATOC_ECOLI RecName: Full=Acetoacetate metabolism regulatory protein AtoC; AltName: Full=Ornithine decarboxylase antizyme; AltName: Full=Ornithine/arginine decarboxylase inhibitor gi|619917|gb|AAA60332.1| NtrC/NifA-like protein regulator [Escherichia coli] gi|1736875|dbj|BAA16016.1| fused response regulator of ato opeon, in two-component system with AtoS [Escherichia coli str. K12 substr. W3110] gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli str. K-12 substr. MG1655] gi|157067384|gb|ABV06639.1| sigma-54 dependent response regulator AtoC [Escherichia coli HS] gi|169889675|gb|ACB03382.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator and sigma 54 interaction protein [Escherichia coli str. K-12 substr. DH10B] gi|188489376|gb|EDU64479.1| sigma-54 dependent response regulator AtoC [Escherichia coli 53638] gi|238861249|gb|ACR63247.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli BW2952] gi|242377856|emb|CAQ32623.1| AtoC transcriptional activator; Az protein inhibitor of ODC [Escherichia coli BL21(DE3)] gi|253323900|gb|ACT28502.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974133|gb|ACT39804.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli B str. REL606] gi|253978300|gb|ACT43970.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli BL21(DE3)] gi|260448686|gb|ACX39108.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli DH1] gi|299880501|gb|EFI88712.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300314468|gb|EFJ64252.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300404338|gb|EFJ87876.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300451611|gb|EFK15231.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300460804|gb|EFK24297.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300838207|gb|EFK65967.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301074219|gb|EFK89025.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|309702531|emb|CBJ01858.1| acetoacetate metabolism regulator (two-component system response regulator) [Escherichia coli ETEC H10407] gi|310332121|gb|EFP99356.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 1827-70] gi|315136852|dbj|BAJ44011.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli DH1] gi|315255155|gb|EFU35123.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315615482|gb|EFU96114.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 3431] gi|320199815|gb|EFW74404.1| Acetoacetate metabolism regulatory protein AtoC [Escherichia coli EC4100B] gi|323936835|gb|EGB33120.1| sigma-54 interaction domain-containing protein [Escherichia coli E1520] gi|323941085|gb|EGB37272.1| sigma-54 interaction domain-containing protein [Escherichia coli E482] gi|323961526|gb|EGB57134.1| sigma-54 interaction domain-containing protein [Escherichia coli H489] gi|323973079|gb|EGB68273.1| sigma-54 interaction domain-containing protein [Escherichia coli TA007] gi|331039648|gb|EGI11868.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli H736] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|308067509|ref|YP_003869114.1| response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Paenibacillus polymyxa E681] gi|305856788|gb|ADM68576.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Paenibacillus polymyxa E681] Length = 519 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 11/87 (12%) Query: 4 KILLAEDDDDMRRFLIKAL------GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVM 56 K+LL +D+ R +++ + GKAG +V + NG AYD+++ P +++DI M Sbjct: 3 KVLLVDDE----RMILEGISQVVDWGKAGTRLVGTARNGIEAYDQIQASPPDFVISDISM 58 Query: 57 PEMDGIELARRATELDPDLKVMFITGF 83 P +DGI L + TE PD++ + ++G+ Sbjct: 59 PGLDGIGLVAKTTEHFPDVRFILLSGY 85 >gi|304309829|ref|YP_003809427.1| predicted response regulator receiver [gamma proteobacterium HdN1] gi|301795562|emb|CBL43760.1| predicted response regulator receiver [gamma proteobacterium HdN1] Length = 122 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 43/71 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +L+ +D R+ + ++L AGYEVV NG A +K+ + SL+++D+ MP MD Sbjct: 1 MSKTVLVVDDSSTFRQVVAQSLKTAGYEVVEGANGKDALEKLNGQKISLIVSDVNMPIMD 60 Query: 61 GIELARRATEL 71 G+ R +L Sbjct: 61 GLAFVREVKKL 71 >gi|260172047|ref|ZP_05758459.1| rteB, two-component system response regulator [Bacteroides sp. D2] gi|315920358|ref|ZP_07916598.1| rteB [Bacteroides sp. D2] gi|313694233|gb|EFS31068.1| rteB [Bacteroides sp. D2] Length = 457 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ + Sbjct: 1 MMSSILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQNVDLILSDLRLPDHE 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 GIDLLKWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYIAKPVNPEELLKKISECL 118 >gi|297570503|ref|YP_003691847.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926418|gb|ADH87228.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 898 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPE 58 +IL+ +D++ +RR L + L G++V + +G A + R PF L++ D+ +P Sbjct: 776 RILVMDDEEMVRRVLQQTLEHLGHQVSTVTDGKQALEAYRAARDANNPFDLVIMDLTIPG 835 Query: 59 -MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G E ++ LDP +V+ +G+A + D A A L+KP L DL + +L Sbjct: 836 GMGGQEAVQKLHALDPKARVVVASGYADNPVLADYQAHGFAARLNKPIMLADLQRVMQQL 895 Query: 118 L 118 L Sbjct: 896 L 896 >gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GYEV+ +G A + V E LL+ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ D A +A L KPF L +L+ V L+ Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVS---DRVAGLDAGADDYLPKPFALEELLARVRSLV 116 >gi|210611481|ref|ZP_03288917.1| hypothetical protein CLONEX_01107 [Clostridium nexile DSM 1787] gi|210151981|gb|EEA82988.1| hypothetical protein CLONEX_01107 [Clostridium nexile DSM 1787] Length = 243 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAG--YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +LL +D++D+ + ++K + G + V+ NNG A + V E +++TDI MP MDG Sbjct: 11 VLLVDDEEDVIQVIMKKINWEGLGFSVIGYANNGVKALEMVEEYQPDVVMTDIKMPYMDG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +ELA E P K++ TGF ++ + + L KP + +L N Sbjct: 71 MELAHHIKEEFPATKLLIFTGFDEFEYAKEAVHLEVEEYLLKPVNSVELTN 121 >gi|182679920|ref|YP_001834066.1| integral membrane sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182635803|gb|ACB96577.1| integral membrane sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 762 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+ EDD ++R + ++ L GY V+ A + + LL TDI +P M+G Sbjct: 631 ETLLIVEDDAEVRGYSVEILRSLGYTVLVAKQANEALAYLHQSRAIDLLFTDIGLPGMNG 690 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +LA A L P L V+F +G+A + + + ++L KPF +L + LL + Sbjct: 691 RDLAEAARMLRPGLPVLFTSGYARSGVLDEEHLDLGMQLLRKPFSRTELAWRLRFLLATR 750 >gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 1307 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR ++ + L A + V + ++GA+A D R P L++ D++MP +DG Sbjct: 655 RILLADDNADMRMYVRRIL-DARWTVEAVSDGAAALDVARRSPPDLVIADVMMPGLDGFG 713 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R RA + + V+ ++ A + A L KPF R+L+ V Sbjct: 714 LLRALRADPVTRCVPVIMLSARAGEESRVEGLAAGADDYLVKPFSARELIARV 766 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL +D+ D L ++LG GY +G SA E + L DI +P MDG Sbjct: 1185 RRILLVDDNLDAVELLAESLGAMGYTTRVAPDGPSALRIAEEFAPDVALLDIGLPVMDGY 1244 Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 ELARR E ++++ ITG+ A S L KP + L + Sbjct: 1245 ELARRLREQPAGERVRLIAITGYGQEADFRRSEGAGFETHLVKPIQIERLTS 1296 >gi|114330760|ref|YP_746982.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Nitrosomonas eutropha C91] gi|114307774|gb|ABI59017.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Nitrosomonas eutropha C91] Length = 437 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ EDD D+ L L GY ++ + G A D +R P L+++D+ M MDG Sbjct: 3 NLPVLIVEDDPDLLEALCATLKLKGYTSLAASGGERALDLLRSHPVGLVISDVQMRPMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLTI 120 L + P + V+ +T + V + L KPF L+ V R LLTI Sbjct: 63 HTLLQNIRRSHPWIPVVLMTAYGEVDKAVAAMRAGARDYLPKPFDPHSLLAYVERYLLTI 122 Query: 121 KN 122 N Sbjct: 123 SN 124 >gi|26248609|ref|NP_754649.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli CFT073] gi|91211514|ref|YP_541500.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UTI89] gi|110642430|ref|YP_670160.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 536] gi|117624414|ref|YP_853327.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli APEC O1] gi|191170007|ref|ZP_03031561.1| sigma-54 dependent response regulator AtoC [Escherichia coli F11] gi|218559138|ref|YP_002392051.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli S88] gi|218690383|ref|YP_002398595.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli ED1a] gi|227887278|ref|ZP_04005083.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 83972] gi|237704695|ref|ZP_04535176.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp. 3_2_53FAA] gi|300936771|ref|ZP_07151664.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300981267|ref|ZP_07175444.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300983213|ref|ZP_07176490.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301022434|ref|ZP_07186316.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301048968|ref|ZP_07195957.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|306814666|ref|ZP_07448828.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli NC101] gi|331658300|ref|ZP_08359262.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA206] gi|26109014|gb|AAN81217.1|AE016763_176 Acetoacetate metabolism Regulatory protein atoC [Escherichia coli CFT073] gi|91073088|gb|ABE07969.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UTI89] gi|110344022|gb|ABG70259.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 536] gi|115513538|gb|ABJ01613.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli APEC O1] gi|190909523|gb|EDV69108.1| sigma-54 dependent response regulator AtoC [Escherichia coli F11] gi|218365907|emb|CAR03649.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli S88] gi|218427947|emb|CAR08718.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli ED1a] gi|222033982|emb|CAP76723.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli LF82] gi|226901061|gb|EEH87320.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp. 3_2_53FAA] gi|227835628|gb|EEJ46094.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 83972] gi|294494076|gb|ADE92832.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli IHE3034] gi|300299219|gb|EFJ55604.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300307631|gb|EFJ62151.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300397535|gb|EFJ81073.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300408614|gb|EFJ92152.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300458101|gb|EFK21594.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|305852060|gb|EFM52512.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli NC101] gi|307554287|gb|ADN47062.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli ABU 83972] gi|307626241|gb|ADN70545.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UM146] gi|312946842|gb|ADR27669.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli O83:H1 str. NRG 857C] gi|315285840|gb|EFU45280.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315292172|gb|EFU51524.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315298046|gb|EFU57315.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|323955988|gb|EGB51741.1| sigma-54 interaction domain-containing protein [Escherichia coli H263] gi|324006598|gb|EGB75817.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324013105|gb|EGB82324.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|331056548|gb|EGI28557.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA206] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] Length = 248 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV + +G +A +E +++ DI++P+ DG+E Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P++ V+F+T AV ++KPF L ++V + LL Sbjct: 78 VMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALL 132 >gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 382 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 8/126 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+A+D+ D L K L GY++ + +G A V +E LL+ DI+MP++D Sbjct: 27 MKKKILIADDNPDNVELLRKRLSAQGYQIAAAFDGEEALQAVLKENPDLLILDIMMPKLD 86 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 G E+ RR + D +L V+ +T + PD + ++KPF+ ++L+ V Sbjct: 87 GYEVLRRLKKQDEYRNLPVILLTAKKEI---PDKLKGLDIGADDYITKPFNPQELLARVR 143 Query: 116 RLLTIK 121 L+ ++ Sbjct: 144 SLMALR 149 >gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596] gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++ + + L K G+ V++ NNG A + E LL+ DI+MP+MDG L Sbjct: 4 ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDGHTL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL+ D ++++ +SKPF R+LV V +L Sbjct: 64 VMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNIL 117 >gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 220 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|170019466|ref|YP_001724420.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli ATCC 8739] gi|169754394|gb|ACA77093.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli ATCC 8739] Length = 461 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|89891885|ref|ZP_01203385.1| response regulator [Flavobacteria bacterium BBFL7] gi|89515738|gb|EAS18540.1| response regulator [Flavobacteria bacterium BBFL7] Length = 387 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ILL ED+ +RR L K L + Y V +G + +++E + L+L DI MP+MDG+ Sbjct: 4 ILLIEDEAAIRRVLSKILSEENKNYTVTEAVDGLEGIEYIKKEDYDLVLCDIKMPKMDGV 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ ++ P++ V+ I+G + ++ +SKP L L+N V L Sbjct: 64 EVLEAMKKIKPEIPVVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 119 >gi|28211448|ref|NP_782392.1| two-component response regulator [Clostridium tetani E88] gi|28203889|gb|AAO36329.1| two-component response regulator [Clostridium tetani E88] Length = 240 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ EDD ++ + KAL K G+ VV G Y K R+ FS+++ DI++P ++G Sbjct: 11 NANVLIVEDDKEINNLISKALIKEGFSVVQAFEGIEGYSKYRKIDFSIIILDIMLPYLNG 70 Query: 62 IELARRATE 70 IE+ ++ E Sbjct: 71 IEIMKKIRE 79 >gi|310824787|ref|YP_003957145.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397859|gb|ADO75318.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 555 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 + ++L+ +DDD R L AL G V +GA+A ++R+ P+ +L DI +P M Sbjct: 433 LQGRVLVIDDDDSSRDALTIALESLGMSVEGVASGAAALKQLRKGTPWDAVLCDIGLPGM 492 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHL 107 G +A+R +L P L + ITG A P P N + +L+KP L Sbjct: 493 RGWTVAQRMNKLAPQLPLYLITGSPGEA-PPKGTRPSNVRALLAKPLAL 540 >gi|262405064|ref|ZP_06081614.1| nitrogen regulation protein NR(I) [Bacteroides sp. 2_1_22] gi|294643591|ref|ZP_06721395.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|262355939|gb|EEZ05029.1| nitrogen regulation protein NR(I) [Bacteroides sp. 2_1_22] gi|292641086|gb|EFF59300.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] Length = 457 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ + Sbjct: 1 MMSSILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQNVDLILSDLRLPDHE 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 GIDLLKWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYIAKPVNPEELLKKISECL 118 >gi|262372670|ref|ZP_06065949.1| nitrogen regulation protein NR(I) [Acinetobacter junii SH205] gi|262312695|gb|EEY93780.1| nitrogen regulation protein NR(I) [Acinetobacter junii SH205] Length = 499 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V + +A +++ +E ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHDEAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P+L V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLSKVKNTHPELPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|260431985|ref|ZP_05785956.1| response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260415813|gb|EEX09072.1| response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 421 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QK+L+ +D RR L+ +L + G+ VV ++G A D R+ L+L+D VMP M G+ Sbjct: 17 QKVLVVDDSRLQRRILVASLKRWGFTVVEADSGEEALDLCRQGLPDLVLSDWVMPGMGGL 76 Query: 63 ELARRATELDPDLKVMFI 80 E R E++ D FI Sbjct: 77 EFCRAFREMEKDQYTYFI 94 >gi|196037899|ref|ZP_03105209.1| regulatory protein VanRB [Bacillus cereus NVH0597-99] gi|196031169|gb|EDX69766.1| regulatory protein VanRB [Bacillus cereus NVH0597-99] Length = 220 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+ Sbjct: 1 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G EL R +L+ + V+ +T AL+ D N + ++KPF ++ L+ V Sbjct: 61 GHELLREFRKLN-NTPVLMMT-----ALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVE 114 Query: 116 RLL 118 LL Sbjct: 115 ALL 117 >gi|87200632|ref|YP_497889.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87136313|gb|ABD27055.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 240 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 15/122 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 I+L EDD +R +AL + GY V + GA + + EP L++ DI++P GIE Sbjct: 5 SIVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPADLVVLDIMLPGTSGIE 64 Query: 64 LARRATELDPDLKVMFITGFAA-------VALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L RR D+ ++F++ + + L D P KPF R+LV + Sbjct: 65 LFRRLRR-QSDVPIIFVSARGSEEDRVLGLELGADDYLP-------KPFSTRELVARIGA 116 Query: 117 LL 118 +L Sbjct: 117 VL 118 >gi|254227084|ref|ZP_04920639.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae V51] gi|125620389|gb|EAZ48768.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae V51] Length = 450 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVEMFADGTSALAAIEQQSFAAIVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTSVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|328949663|ref|YP_004366998.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328449987|gb|AEB10888.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 1/113 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD ++ R L L +AG+E++ NG +RE L++ D+ +P+++G Sbjct: 4 KRILVIEDDPEIARLLELELCEAGFEMIWAPNGMQGLVALRERSPDLVILDLGLPDLEGG 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ARRA + ++ ++ +T AV + + ++KPFH +L+ + Sbjct: 64 EIARRAKQAG-EIPIIVLTAADAVERKVELLSGGADDYVTKPFHPAELIARIQ 115 >gi|313896054|ref|ZP_07829608.1| chemotaxis protein CheY [Selenomonas sp. oral taxon 137 str. F0430] gi|320529420|ref|ZP_08030508.1| chemotaxis protein CheY [Selenomonas artemidis F0399] gi|312975479|gb|EFR40940.1| chemotaxis protein CheY [Selenomonas sp. oral taxon 137 str. F0430] gi|320138386|gb|EFW30280.1| chemotaxis protein CheY [Selenomonas artemidis F0399] Length = 120 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++L+ +D MR + L K GYE+V NG A +K +E L+ DI MPEM Sbjct: 1 MATRVLVVDDAAFMRMMVKDILSKNGYEIVGEAENGMKALEKYQELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGI + ++DP KV+ + A+ ++ + KPF Sbjct: 61 DGITAVKEIKKVDPAAKVVMCSAMGQQAMVIEAIQAGARDFIVKPFQ 107 >gi|290770163|gb|ADD61922.1| putative protein [uncultured organism] Length = 241 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A + +R+ F L+L DI +P+ +G Sbjct: 13 KQILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINLPDGNGF 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF +R L ++ + Sbjct: 73 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIRALQRKIKAM 127 Query: 118 LTI 120 + Sbjct: 128 FAM 130 >gi|262370218|ref|ZP_06063544.1| two-component system response regulatory system response regulator [Acinetobacter johnsonii SH046] gi|262314560|gb|EEY95601.1| two-component system response regulatory system response regulator [Acinetobacter johnsonii SH046] Length = 493 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V S SA D++ + ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTSFEEAQSALDQLSLDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLAKVKANYPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|225568533|ref|ZP_03777558.1| hypothetical protein CLOHYLEM_04610 [Clostridium hylemonae DSM 15053] gi|225162761|gb|EEG75380.1| hypothetical protein CLOHYLEM_04610 [Clostridium hylemonae DSM 15053] Length = 545 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL +D+ ++R +I+ L K GY+V + NG A +K + +++TDI MP MD Sbjct: 6 KILLVDDELEIRDGMIQKLDWHKLGYDVAAAAENGVEALEKAEQVQPDVIMTDIRMPFMD 65 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+E + EL P +K++ +GF Sbjct: 66 GLEFIGKVIELRPAVKIIVFSGF 88 >gi|160885644|ref|ZP_02066647.1| hypothetical protein BACOVA_03647 [Bacteroides ovatus ATCC 8483] gi|156109266|gb|EDO11011.1| hypothetical protein BACOVA_03647 [Bacteroides ovatus ATCC 8483] Length = 457 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ + Sbjct: 1 MMSSILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQNVDLILSDLRLPDHE 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 GIDLLKWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYIAKPVNPEELLKKISECL 118 >gi|157963415|ref|YP_001503449.1| response regulator receiver protein [Shewanella pealeana ATCC 700345] gi|157848415|gb|ABV88914.1| response regulator receiver protein [Shewanella pealeana ATCC 700345] Length = 224 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 59/118 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD ++ + +++ L G+ V + + +A ++ F + L D++M M G+E Sbjct: 4 VLLAEDDRELSQNMVEILELEGFSVTAVESAEAAIRASEKQHFDIALMDLLMAGMTGVEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P + V+ IT +A V D+ V++KPF +L+ + R L K Sbjct: 64 ISNLRQNQPLIAVIIITAYATVDTAVDAMKKGADSVMTKPFKSSELIVTIRRSLAEKQ 121 >gi|91776289|ref|YP_546045.1| response regulator receiver domain-containing protein [Methylobacillus flagellatus KT] gi|91710276|gb|ABE50204.1| response regulator receiver domain protein (CheY-like) [Methylobacillus flagellatus KT] Length = 121 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ ++ +L AGY+V+ +G A +K + + L+LTD MP MD Sbjct: 1 MGKTILAVDDSGSLRQMVVFSLNAAGYQVIEAVDGEDALNKAQTQVVDLVLTDQNMPNMD 60 Query: 61 GIELARRATELDPDLKV--MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + L KV + +T ++ + A L KPF + L++ V R++ Sbjct: 61 GLTLIKSLRNLSSYQKVPILMLTTESSDEMKALGRAAGATGWLVKPFDPKRLLDVVQRVI 120 >gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++ + + L K G+ V++ NNG A + E LL+ DI+MP+MDG L Sbjct: 4 ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDGHTL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL+ D ++++ +SKPF R+LV V +L Sbjct: 64 VMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNIL 117 >gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590] Length = 241 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ +D+D +RR L L + + + ++G AY+ + ++ +L D+++PEMD Sbjct: 1 MSKEILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|262371774|ref|ZP_06065053.1| chemotactic signal transduction system component [Acinetobacter junii SH205] gi|262311799|gb|EEY92884.1| chemotactic signal transduction system component [Acinetobacter junii SH205] Length = 1687 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ L+L DI MP MDG E+ Sbjct: 1569 IMIVDDSVTVRKVTSRLLERHGYDVVTAKDGVDAIEQLETIKPDLMLLDIEMPRMDGFEV 1628 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R EL DL ++ IT + + ++ + KPF L+ + LLT++ Sbjct: 1629 TNLVRHHELHRDLPIIMITSRTGEKHRERALSLGVSQYMGKPFQEETLLENIESLLTVR 1687 >gi|253699327|ref|YP_003020516.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251774177|gb|ACT16758.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 469 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L + L + V + +G A + ++++ F L++TD+ MP M G E+ Sbjct: 3 ILVVDDESVIRDGLARILEGDSFTVDTAKSGHVAIEHLQQKEFDLIITDLKMPGMSGFEV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L P+ V+ ITGFA V ++ + KPF ++ +V+ L K Sbjct: 63 LAAVKTLQPETPVIMITGFATVETAVEAMKNGTVDYIVKPFTPEQILEKVHLALEQK 119 >gi|254481325|ref|ZP_05094570.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214038488|gb|EEB79150.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 231 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 54/116 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +LL EDD + +F+ L + G+ V C G AYD R++ F + + D ++P DG Sbjct: 4 NMNVLLVEDDQSVAKFICSELERVGHRSVHCTEGDLAYDTARDQAFDVWVVDRMLPGRDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++L + E+ + + ++ V L KPF + +L+ + L Sbjct: 64 LQLIQDLREIGNETPALVLSALGEVDDRVKGLRSGADDYLVKPFAMDELLARLQAL 119 >gi|332879261|ref|ZP_08446958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682681|gb|EGJ55581.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1414 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED D+ R FL++ L K + VV +G R E L+++D++MP MDG+ Sbjct: 1156 KKILVVEDHDEFRHFLMEQLQK-DFCVVEARDGVEGEQAARTELPDLIVSDLMMPRMDGM 1214 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL RR L D++ I A + D + + +SKPF+ L + +L Sbjct: 1215 ELCRR---LKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQL 1271 Query: 118 LTIK 121 + K Sbjct: 1272 IEQK 1275 >gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++L+ ED+D +R F++ L ++GYEVV N G A E F + L DI+MP +D Sbjct: 2 KRVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMPGID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+++ ++ E + + ++ ++ + ++KPF + +L+ V+ Sbjct: 62 GMQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVD 116 >gi|284038156|ref|YP_003388086.1| response regulator receiver protein [Spirosoma linguale DSM 74] gi|283817449|gb|ADB39287.1| response regulator receiver protein [Spirosoma linguale DSM 74] Length = 126 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+AED ++ K L Y++ + NG + +E FS+LL DI MP MDG Sbjct: 4 SKRVLIAEDSSVIQNLARKILEFQNYDITAVKNGEQVLQILEKEDFSILLLDINMPLMDG 63 Query: 62 IELARRATELDPDLK----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +E RR L K ++ ITG A + VL KP + LV VN+L Sbjct: 64 MECVRRVRALPEKEKAAVPIVAITGNAKNYTEEEFKTAGFNDVLVKPLNFDRLVEVVNQL 123 >gi|160902838|ref|YP_001568419.1| response regulator receiver protein [Petrotoga mobilis SJ95] gi|160360482|gb|ABX32096.1| response regulator receiver protein [Petrotoga mobilis SJ95] Length = 119 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + +L+ +D MR L L KA YEVV +NG A +K +E + + DI MP Sbjct: 1 MAKTVLIVDDAAFMRMMLKDILTKANYEVVGEASNGQEAVEKYQELKPNFVTMDITMPIK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DGI+ + ++DP+ K++ + A+ +S + KPF ++ + +L Sbjct: 61 DGIQAIKEIKKIDPNAKIIVCSAMGQQAMVIESIQAGAKDFIVKPFQANRVIEALQKL 118 >gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 808 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 1/108 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++ + K L K GY NG + + + ++L DI MPEMDG++ Sbjct: 674 RILVAEDNIINQKVIKKMLHKLGYRADVAANGLEVLVALDRQDYDVILMDIQMPEMDGLD 733 Query: 64 LARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 AR+ E P L K++ IT FA +SKP +L +L Sbjct: 734 AARKIRETRPTLPKIIAITAFAMEGDKEKCIDSGMDGYISKPVNLEEL 781 >gi|308272553|emb|CBX29157.1| Acetoacetate metabolism regulatory protein atoC [uncultured Desulfobacterium sp.] Length = 445 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD L + L +A Y+V C + A K ++LL++DI MPE D Sbjct: 5 MRNRILVIDDDLVACEVLQETLIRAQYDVDICTSAKEALGK-DLSSYNLLISDIRMPEAD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L + + P+L V+ +T + ++ +S + +SKPF + +V +LL + Sbjct: 64 GLNLLHQVQKQWPELPVIMVTAYGSLETTMESLRLGASDYISKPFSPEAIRLKVKKLLDV 123 Query: 121 KN 122 K+ Sbjct: 124 KD 125 >gi|262279366|ref|ZP_06057151.1| two-component system response regulatory system response regulator [Acinetobacter calcoaceticus RUH2202] gi|262259717|gb|EEY78450.1| two-component system response regulatory system response regulator [Acinetobacter calcoaceticus RUH2202] Length = 497 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V + +A +++ + ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLSKVKNTHPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1050 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILLAEDD + LGKAG+ V NG A + +RE F L+L D+ MP MDG Sbjct: 904 NLRILLAEDDPVNMFAARRILGKAGHAVTPATNGGQAVELLRESEFDLILMDVQMPVMDG 963 Query: 62 IE 63 +E Sbjct: 964 LE 965 >gi|255281904|ref|ZP_05346459.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267577|gb|EET60782.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 224 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD R L L +AGY V + +NG +A D + +E L++ DI+MP+MDG E Sbjct: 4 ILVVDDDKHTRMLLQAILEEAGYTVTTADNGETALDVLDKEHIDLVVLDIMMPKMDGYEF 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + E + L ++ +T D+ K ++ ++ ++E LL IK Sbjct: 64 TKTIRETNDALPILMVTA------KQDAADEKQGFLVGTDDYITKPIDEEKMLLRIK 114 >gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus DSM 14838] gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus DSM 14838] Length = 243 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 55/120 (45%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ ED+ + L L + GY+ + +G R F L+++DI++P+MDG Sbjct: 17 HTILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHTFDLVISDIILPKMDGF 76 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL + + +P + ++ +T + D + KPF R+L + LL N Sbjct: 77 ELCKEIRKTNPGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRNN 136 >gi|119896363|ref|YP_931576.1| sigma-54 dependent response regulator [Azoarcus sp. BH72] gi|119668776|emb|CAL92689.1| sigma-54 dependent response regulator [Azoarcus sp. BH72] Length = 451 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 57/114 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+ +D+ MR FL +AL G+ V + + +K+ F L++ DI +P GI Sbjct: 13 QSVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPGKAGI 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E + T +V+ IT FA + D+ A + KPF + ++N ++R Sbjct: 73 EWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHR 126 >gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae] Length = 227 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A D+ E + LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T V L KPF L +L+ V LL Sbjct: 62 VIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLL 116 >gi|325269999|ref|ZP_08136608.1| response regulator [Prevotella multiformis DSM 16608] gi|324987722|gb|EGC19696.1| response regulator [Prevotella multiformis DSM 16608] Length = 539 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN +LL DD+ ++ + I L K GYEV++ +NGA A ++ + + F L+L D MP + Sbjct: 1 MNNGLLLWVDDEIELLKAHIIFLEKKGYEVITVSNGADAIEQCQTQTFDLVLLDEQMPGL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E +R ++ P V+ +T + + K A L KP VN LLT Sbjct: 61 SGLETLQRIKDIQPATPVVMVTKSEEEDIMNQAIGAKIADYLIKP------VNPNQILLT 114 Query: 120 IK 121 +K Sbjct: 115 LK 116 >gi|325261941|ref|ZP_08128679.1| DNA-binding response regulator [Clostridium sp. D5] gi|324033395|gb|EGB94672.1| DNA-binding response regulator [Clostridium sp. D5] Length = 528 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 4/76 (5%) Query: 10 DDDDMRRFLIKALG---KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 DDD + R +K LG KAGY++ + C +G A D + E +++TDI MP MDGIEL Sbjct: 8 DDDFLVRSYLKQLGAWQKAGYQITADCRDGEEALDVIERERPDVVITDISMPLMDGIELI 67 Query: 66 RRATELDPDLKVMFIT 81 RR ++ + ++ ++ Sbjct: 68 RRVRKMSQSIYLIVLS 83 >gi|284041535|ref|YP_003391875.1| response regulator receiver protein [Conexibacter woesei DSM 14684] gi|283945756|gb|ADB48500.1| response regulator receiver protein [Conexibacter woesei DSM 14684] Length = 119 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR+ L AL G+EVV NG A + +E L+ DI MPE DG+ Sbjct: 3 RVLVVDDAAFMRKMLTDALSNGGHEVVGEAGNGVEAIQRFQELRPELITLDITMPEKDGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E R +DP KV+ + A +S + KPF +++ V + L Sbjct: 63 EALREIMAIDPSAKVVMCSALGQEAKVLESIKLGAKDFVVKPFQADRVLDAVGKALA 119 >gi|317154598|ref|YP_004122646.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944849|gb|ADU63900.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 777 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 +IL +D+ + + L G+EVV+ + A + R E + L++TD MP M G Sbjct: 658 RILFVDDEKPLTDIGREMLESCGFEVVTRTSSIEALEAFRHRAEDYDLVITDQTMPNMTG 717 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +ELAR ++ PD+ ++ TGF+ + KP DL+ ++RLL+ K Sbjct: 718 MELAREILKIRPDMPIILCTGFSDAVSYDRLRDIGIGDFIMKPILKHDLIGSLSRLLSPK 777 >gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL +DD + + L +LGK G+EV++ ++G A K R+ L++ D++MP MD Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GIELARR 67 G E ++ Sbjct: 61 GFETYQK 67 >gi|222528859|ref|YP_002572741.1| AraC family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455706|gb|ACM59968.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor bescii DSM 6725] Length = 509 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 14/125 (11%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL ED+ MR+ +IK + + G+E+ NG A D ++ E +++TDI MP MD Sbjct: 3 KILLVEDEIFMRKGIIKLIDWERLGFEIAYEAGNGQEALDILKSEKVDVIITDIKMPVMD 62 Query: 61 GIELARRATE-LDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIEL +R +E + ++ I+G FA A+ N L KP +L+ + Sbjct: 63 GIELIKRVSEKFENKPAIIIISGYNEFEFAKAAIKYGVN-----DYLLKPIDENELIQTL 117 Query: 115 NRLLT 119 R+ T Sbjct: 118 ERIKT 122 >gi|254410199|ref|ZP_05023979.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196183235|gb|EDX78219.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1855 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ + L L GYE++ +G A + L+L DI MPE+DG+ Sbjct: 1738 ILLAEDNEANTQTLSDYLQGIGYEMIMAKDGKEAVQLSQRRKPDLILMDIQMPELDGLS- 1796 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A + +P + I A+A++ D A V ++KP +L+ L +N LLT Sbjct: 1797 ATQQIRANPRTATIPIIAITALAMSGDREKCLAAGVSYYMTKPVNLKKLATIINALLT 1854 >gi|153802617|ref|ZP_01957203.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MZO-3] gi|124121833|gb|EAY40576.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MZO-3] Length = 450 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +GASA + + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALEAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQSLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|322372348|ref|ZP_08046884.1| DNA-binding response regulator DltR [Streptococcus sp. C150] gi|321277390|gb|EFX54459.1| DNA-binding response regulator DltR [Streptococcus sp. C150] Length = 228 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAED++ + R AL GYEV NG A D E + +++ DI+MP Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAENAYQVMIMDIMMPIKT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE R V+ +T A + D+ A L+KP L++L+ + L Sbjct: 61 GIEALREIRSTGNTTHVIMLTAMAEIDDRVTGLDAGAD---DYLTKPMSLKELLARLRSL 117 >gi|298482492|ref|ZP_07000678.1| transcriptional regulatory protein ZraR [Bacteroides sp. D22] gi|298271471|gb|EFI13046.1| transcriptional regulatory protein ZraR [Bacteroides sp. D22] Length = 457 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ + Sbjct: 1 MMSSILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQNVDLVLSDLRLPDHE 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 GIDLLKWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYIAKPVNPEELLKKISECL 118 >gi|150016360|ref|YP_001308614.1| LytTR family two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902825|gb|ABR33658.1| two component transcriptional regulator, LytTR family [Clostridium beijerinckii NCIMB 8052] Length = 247 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG-YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 MN K+L+ +D+ +R + K L K+G +EVV +NG A D +E +++ DI MP+ Sbjct: 1 MNIKVLIVDDEIGIRTIIKKILDKSGGFEVVGETDNGEEAIDIFKEHRPNVVFFDIEMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +GI+ AR T++DP ++F T A ++ L KPF + ++ ++R+ Sbjct: 61 CNGIDCARILTDIDPKTIIIFATAHAEYM--SEAFQLYAFDYLIKPFKIERVMQTLDRI 117 >gi|197105541|ref|YP_002130918.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196478961|gb|ACG78489.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 694 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MD 60 ++ILL EDD + + L GY+V + N + A + LL TD+VMP + Sbjct: 563 ERILLVEDDPTVLALTLDVLTGLGYQVQTATNASEALQIIHSGAEIDLLFTDVVMPGGVS 622 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 G+ LAR A EL P LKV+ +GF + + A+ +L KP+ + + + +LL Sbjct: 623 GVSLARTARELRPGLKVLLTSGFVG-----ERQVMEGAEFPLLDKPYETSAMASMLRKLL 677 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ +DD+ ++AL G+E+V +G A ++ E F+L+L D+ MP MD Sbjct: 28 LKARILIVDDDERNAFAAVQALEDLGHELVVARSGEEALKRLLSEEFALILLDLHMPGMD 87 Query: 61 GIELAR--RATELDPDLKVMFIT 81 G E A R+ + D ++F+T Sbjct: 88 GYETAALIRSRKRTADTPIVFLT 110 >gi|188579381|ref|YP_001922826.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342879|gb|ACB78291.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1050 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 2/105 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + + AS ++ LL+TD+ +P M+ Sbjct: 930 ETVLVVDDEPTVRMLVTEVLEDLGYTAIEAADSASGLKVLQSGVRIDLLITDVGLPGGMN 989 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G ++A E PDLKV+FITG+A A + + +VL+KPF Sbjct: 990 GRQMADAGRETRPDLKVLFITGYAENAAVGNGHLEPGMEVLTKPF 1034 >gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +R + L G+ V+ +GA VRE+ L++ D++MPEMDG Sbjct: 6 QRRILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDG 65 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR E P L + T + +S A L+KPF++ +L + LL Sbjct: 66 WEVCRRLREFSQIPVLMLTARTQSKDIVTGLESGA---DDYLTKPFNMDELTARIRALL 121 >gi|327312381|ref|YP_004327818.1| PglZ domain-containing protein [Prevotella denticola F0289] gi|326945555|gb|AEA21440.1| PglZ domain protein [Prevotella denticola F0289] Length = 539 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN +LL DD+ ++ + I L K GYEV++ +NGA A ++ + + F L+L D MP + Sbjct: 1 MNNGLLLWVDDEIELLKAHIIFLEKKGYEVITVSNGADAIEQCQTQTFDLVLLDEQMPGL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E +R ++ P V+ +T + + K A L KP VN LLT Sbjct: 61 SGLETLQRIKDIQPATPVVMVTKSEEENIMNQAIGAKIADYLIKP------VNPNQILLT 114 Query: 120 IK 121 +K Sbjct: 115 LK 116 >gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR [Solobacterium moorei F0204] gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR [Solobacterium moorei F0204] Length = 230 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++ L L + GY+V++ +NGA +++P L++ DI+MPEMDG E Sbjct: 3 KILIIDDEKELVALLQDELTERGYQVLAAHNGADGVTLSKKQP-DLIVLDIMMPEMDGFE 61 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + R+ + L P ++F++ A + + +SKPF LR+L+ ++ Sbjct: 62 VCRKIRDEVLCP---ILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARID 112 >gi|313885857|ref|ZP_07819598.1| transcriptional regulatory protein RprY [Porphyromonas asaccharolytica PR426713P-I] gi|332300686|ref|YP_004442607.1| two component transcriptional regulator, winged helix family [Porphyromonas asaccharolytica DSM 20707] gi|312924686|gb|EFR35454.1| transcriptional regulatory protein RprY [Porphyromonas asaccharolytica PR426713P-I] gi|332177749|gb|AEE13439.1| two component transcriptional regulator, winged helix family [Porphyromonas asaccharolytica DSM 20707] Length = 243 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 10/112 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++ L EDD+ + L + L YEV +G + + ++ +SL L D++MP+MDG E Sbjct: 7 RVFLCEDDESLGLMLQEYLIAKDYEVDLFTDGETGLEAFGKKEYSLCLIDVMMPKMDGFE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDL 110 LA++ + +P++ ++F+T A + + + K+ ++KPF +++L Sbjct: 67 LAKQIRDANPNIPIIFVT-----AKDQKKDVLRGFKLGADDYITKPFSMQEL 113 >gi|299147503|ref|ZP_07040568.1| transcriptional regulatory protein ZraR [Bacteroides sp. 3_1_23] gi|298514781|gb|EFI38665.1| transcriptional regulatory protein ZraR [Bacteroides sp. 3_1_23] Length = 457 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ + Sbjct: 1 MMRSILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQNVDLILSDLRLPDHE 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 GIDLLKWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYVAKPVNPEELLKKISEAL 118 >gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 224 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + + K L Y V NG A D + + LL+ DI+MPEMDG+ Sbjct: 2 KILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIMMPEMDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L ++ + + V+F+T + L KPF +L+ + LL N Sbjct: 62 LVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRSN 120 >gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] Length = 255 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AGYEV S +G A E L++ D+++P+MDG Sbjct: 25 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 84 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ D+ ++F+T + + ++KPF L ++V +N +L Sbjct: 85 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAIL 139 >gi|260597937|ref|YP_003210508.1| hypothetical protein CTU_21450 [Cronobacter turicensis z3032] gi|260217114|emb|CBA30897.1| hypothetical protein CTU_21450 [Cronobacter turicensis z3032] Length = 406 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 40/64 (62%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D RR + LGK GYEV+ NG +A D + +P +++L+D MP MDG+ Sbjct: 5 QRILIVDDSTVYRRLIGSMLGKWGYEVLEAVNGVAALDVLATQPVNMVLSDWEMPVMDGL 64 Query: 63 ELAR 66 L + Sbjct: 65 TLCQ 68 >gi|327480279|gb|AEA83589.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 394 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G+ V+ NG D E L++ D+ MP+MDG+EL Sbjct: 8 LLIIDDDDVVRASLAAYLDDSGFRVLQAANGPQGMDLFESEQPDLVICDLRMPQMDGLEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 R+ +E DL V+ ++G ++ ++ A L KP L L + V R L Sbjct: 68 IRQISERQIDLPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAMLEHSVRRAL 122 >gi|317481392|ref|ZP_07940460.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316902488|gb|EFV24374.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1330 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ ED+D++R +L ++ K Y V CNNG A V++ L+L+DI+MPEM G Sbjct: 1067 HRILIVEDNDELRNYLFQSFSKI-YNVQVCNNGKEALTIVKQFWPELILSDIMMPEMRGD 1125 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I AL + N + + + KPF + L + L Sbjct: 1126 EL---CIAIKNDIETSHIPVVLLTALGDEKNILEGLHIGADEYIVKPFSINILKASIANL 1182 Query: 118 L 118 L Sbjct: 1183 L 1183 >gi|310821327|ref|YP_003953685.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394399|gb|ADO71858.1| Sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 478 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 56/107 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R+ L L + GY+V NG + + +++TD+VMP++ G+E Sbjct: 3 KVLVLDDEANLRKVLAAMLRREGYDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R +PD+ V+ IT V ++ ++KPF +L Sbjct: 63 VLRSVNAANPDVPVIIITAHGTVDSAVEAIKAGAFDYITKPFEQSEL 109 >gi|291545404|emb|CBL18512.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Ruminococcus sp. SR1/5] Length = 375 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + L+A+DD +R +L + + +AGYE+V +G AY +++E +L+TD+ MP MD Sbjct: 3 RTLVADDDFLVRSYLKTLDSWERAGYEIVDDAEDGEEAYGFLQKEKIDVLVTDLTMPVMD 62 Query: 61 GIELARRATELDPDLKVMFIT 81 GIEL R+ E + D+ ++ ++ Sbjct: 63 GIELIRKIREENRDIYIIVLS 83 >gi|255530419|ref|YP_003090791.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255343403|gb|ACU02729.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 1334 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 13/127 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ ++R F+ L K +EV+ NG A D ++E+ L+++DI+MP +DGI L Sbjct: 1076 ILVVEDNTEIRTFIAGKLAK-DFEVLQAGNGQEALDILKEKSTHLIISDIMMPVLDGIAL 1134 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLLT 119 R E +L+ I A N + + +V L KPF L+ +V+ LL Sbjct: 1135 CRAVKE---NLEYAHIPIILLTAKNTLQSKIEGLEVGADAYLEKPFSPDHLLTQVSNLLA 1191 Query: 120 ----IKN 122 IKN Sbjct: 1192 GRDKIKN 1198 >gi|182418435|ref|ZP_02949729.1| sporulation initiation phosphotransferase F [Clostridium butyricum 5521] gi|237666452|ref|ZP_04526437.1| sporulation initiation phosphotransferase F (Stage 0sporulation protein F) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377817|gb|EDT75361.1| sporulation initiation phosphotransferase F [Clostridium butyricum 5521] gi|237657651|gb|EEP55206.1| chemotaxis protein CheY [Clostridium butyricum E4 str. BoNT E BL5262] Length = 119 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K +E+V NNG A D ++E ++ DI MP+MDGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNDFEIVGEANNGIVAVDMYKKEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ DP+ K++ + ++ D+ + KPF ++ + +++ Sbjct: 63 EAVKQIKAFDPNAKIIMCSAMGQQSMVMDAIRAGAKDFIVKPFQAERVLEAIKKVI 118 >gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38] gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 12/122 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 KILL +D+ D+ + L + GY++V+ +NG A ++E L++ D++MPEMDG+ Sbjct: 7 KILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKELPQLIIMDVMMPEMDGME 66 Query: 63 --ELARRATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ R+ EL D + F+T ++ VA D+ A ++KP + LV++V Sbjct: 67 ACEIIRKTPELQ-DTVITFLTARSEDYSQVA-GFDAGAD---DYIAKPIKPKVLVSKVQA 121 Query: 117 LL 118 LL Sbjct: 122 LL 123 >gi|75909975|ref|YP_324271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703700|gb|ABA23376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 714 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+ + +L Y+ ++ NG A A ++ S++L DI+MP MDG+ Sbjct: 594 ILIVDDEAAIVEITKTSLEDYNYKTLTAKNGIEAIALYAQHQDKISMVLMDIMMPSMDGL 653 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E++P LK++ I+G L +NA NA L KP+++ DLV+ ++ + Sbjct: 654 TAIRILQEMNPQLKIIAISGITGNNQLAEAANAGVNA-FLRKPYNIYDLVHAIHNIF 709 >gi|24374082|ref|NP_718125.1| response regulator [Shewanella oneidensis MR-1] gi|24348563|gb|AAN55569.1|AE015695_11 response regulator [Shewanella oneidensis MR-1] Length = 658 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL +DD + + L + L ++GY V + +G A + ++LTD MP MD Sbjct: 1 MDKSLLLVDDDVGILKALTRLLTRSGYSVKTAQSGEEALTLLLNYDCKVVLTDFRMPYMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +L + L PD+ + I+G++ ++ NA + L KP+ +L+ E+ T Sbjct: 61 GGQLLSKIKRLYPDIVSLVISGYSDFESVKSLLNAGSAYRFLQKPWEDDELLGEIANAFT 120 >gi|330953651|gb|EGH53911.1| PAS protein [Pseudomonas syringae Cit 7] Length = 326 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M Sbjct: 198 GETVLIVDDEPSVRMLVAEVISGLGYNCLEAADAQSGLQILQSDTRIDLLISDIGLPGGM 257 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 258 NGREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 316 >gi|325276365|ref|ZP_08142142.1| histidine kinase [Pseudomonas sp. TJI-51] gi|324098516|gb|EGB96585.1| histidine kinase [Pseudomonas sp. TJI-51] Length = 135 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-M 59 ++ IL+ ED D+ L GY N A ++ E + LL TD++MP M Sbjct: 10 SESILIVEDRPDVAELAKMVLEDYGYAADMVLNAREALKLIQAGERYDLLFTDLIMPGGM 69 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR L P +KV+ TG+A ++ +V+SKP DL V ++L Sbjct: 70 NGVMLAREVRRLQPQIKVLLTTGYAENSIERTDIGGSEFEVISKPCQPHDLARRVRQVL 128 >gi|299141252|ref|ZP_07034389.1| response regulator [Prevotella oris C735] gi|298577212|gb|EFI49081.1| response regulator [Prevotella oris C735] Length = 519 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 13/128 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N K+L +D+ D+ + I L K GY V + +NG A + REE F L+L D +MP + G Sbjct: 3 NGKLLWVDDEIDLLKGHIIFLEKKGYNVTTMSNGIDAVELCREETFDLILLDEMMPGLTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP-------------FHLR 108 +E +R ++ P ++ +T + + K A L KP H R Sbjct: 63 LETLQRIKDIQPATPIVMVTKSEEEDIMNQAIGRKIADYLIKPVNPNQILITLKKNIHNR 122 Query: 109 DLVNEVNR 116 ++V EV + Sbjct: 123 EIVTEVTQ 130 >gi|281423680|ref|ZP_06254593.1| response regulator [Prevotella oris F0302] gi|281402232|gb|EFB33063.1| response regulator [Prevotella oris F0302] Length = 519 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 13/128 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N K+L +D+ D+ + I L K GY V + +NG A + REE F L+L D +MP + G Sbjct: 3 NGKLLWVDDEIDLLKGHIIFLEKKGYNVTTMSNGIDAVELCREETFDLILLDEMMPGLTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP-------------FHLR 108 +E +R ++ P ++ +T + + K A L KP H R Sbjct: 63 LETLQRIKDIQPATPIVMVTKSEEEDIMNQAIGRKIADYLIKPVNPNQILITLKKNIHNR 122 Query: 109 DLVNEVNR 116 ++V EV + Sbjct: 123 EIVTEVTQ 130 >gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2] gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2] Length = 240 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI L EDD D+ L +L GYE+V +GA A +++ + + ++ D+++P +DG+ Sbjct: 5 KKIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLMLPGVDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L V+ I+ + L+KPF + +L+ V L Sbjct: 65 EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALF 120 >gi|224373076|ref|YP_002607448.1| ggdef domain protein [Nautilia profundicola AmH] gi|223589136|gb|ACM92872.1| ggdef domain protein [Nautilia profundicola AmH] Length = 391 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L EDD+++R + L K EV NG + ++ ++L+DI MP MDG+E++ Sbjct: 15 LYVEDDENIRESFLIILNKIFKEVFVAKNGKEGLELFKKHSPDIILSDIKMPIMDGLEMS 74 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + LDPD ++ +T F + + ++KP + L +++N L I Sbjct: 75 KEIKALDPDAYIILLTAFTDIEFLKKAIDLGVEGYITKPVDKKKLYHKLNFLAEI 129 >gi|254507287|ref|ZP_05119423.1| nitrogen regulation protein NR (I) [Vibrio parahaemolyticus 16] gi|219549747|gb|EED26736.1| nitrogen regulation protein NR (I) [Vibrio parahaemolyticus 16] Length = 467 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 59/115 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R + K L AG + + ++ S + E +L++DI MP +DGIEL Sbjct: 6 VWVVDDDSSIRWVMEKTLSSAGIKCDTFSDAESVLLALERESPDVLVSDIRMPGIDGIEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R+ E PDL V+ +T + + ++ + L KPF + + + V R +T Sbjct: 66 LRQVHERSPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPKPFDVDETLTLVERAIT 120 >gi|207110063|ref|ZP_03244225.1| response regulator [Helicobacter pylori HPKX_438_CA4C1] Length = 80 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI L EDD + + + L GYEV NG AY+++ E F+LLL D+ +PEM+ Sbjct: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60 Query: 61 GIELARR 67 +EL +R Sbjct: 61 SLELFKR 67 >gi|189464820|ref|ZP_03013605.1| hypothetical protein BACINT_01164 [Bacteroides intestinalis DSM 17393] gi|189437094|gb|EDV06079.1| hypothetical protein BACINT_01164 [Bacteroides intestinalis DSM 17393] Length = 233 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 20/128 (15%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD +R + L GYEV++ NG RE ++L+DI MP MDG Sbjct: 5 KLLLVEDDPSLRYIVQSGLEDIIEGYEVLAAANGEEGLAMWREHRPDVILSDIEMPIMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVN 112 E+ +R E+D + ++F +G +PKN + KPF +L Sbjct: 65 YEMVKRIREVDKETPIIFSSGLV---------SPKNVLKGYELGANNYIKKPFIPEELDA 115 Query: 113 EVNRLLTI 120 ++ LL + Sbjct: 116 HIHALLKL 123 >gi|39996595|ref|NP_952546.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983476|gb|AAR34869.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505611|gb|ADI84334.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 458 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ +D+ MR FL L + GY V + A + + + L+++D+ MP +D Sbjct: 1 MEIHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLERKTYDLVISDVKMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GI L R E+ PD V+ +T F+ ++ ++KPF + ++ Sbjct: 61 GITLLGRIKEMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEV 110 >gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24] gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans TK24] gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRSEGHAVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|15600912|ref|NP_232542.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587984|ref|ZP_01677737.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae 2740-80] gi|121729671|ref|ZP_01682132.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae V52] gi|147671570|ref|YP_001215971.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae O395] gi|153819707|ref|ZP_01972374.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae NCTC 8457] gi|153823646|ref|ZP_01976313.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae B33] gi|227811768|ref|YP_002811778.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae M66-2] gi|229506692|ref|ZP_04396201.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae BX 330286] gi|229510513|ref|ZP_04399993.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae B33] gi|229517356|ref|ZP_04406801.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae RC9] gi|229605166|ref|YP_002875870.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MJ-1236] gi|254850409|ref|ZP_05239759.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MO10] gi|255746042|ref|ZP_05419989.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholera CIRS 101] gi|262167052|ref|ZP_06034768.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae RC27] gi|298500002|ref|ZP_07009808.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MAK 757] gi|9657530|gb|AAF96055.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547782|gb|EAX57871.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae 2740-80] gi|121628569|gb|EAX61049.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae V52] gi|126509750|gb|EAZ72344.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae NCTC 8457] gi|126518829|gb|EAZ76052.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae B33] gi|146313953|gb|ABQ18493.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae O395] gi|227010910|gb|ACP07121.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae M66-2] gi|227014770|gb|ACP10979.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae O395] gi|229345392|gb|EEO10365.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae RC9] gi|229352958|gb|EEO17898.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae B33] gi|229357043|gb|EEO21961.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae BX 330286] gi|229371652|gb|ACQ62074.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MJ-1236] gi|254846114|gb|EET24528.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MO10] gi|255735796|gb|EET91194.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholera CIRS 101] gi|262024507|gb|EEY43192.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae RC27] gi|297541983|gb|EFH78034.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae MAK 757] Length = 450 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +GASA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + + V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|317154582|ref|YP_004122630.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316944833|gb|ADU63884.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 237 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 52/110 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ L G+EV + NG + E ++LTDI MP MD Sbjct: 1 MPLKILVIDDERPTLSMFKLFLDAYGFEVYTAENGDQGIELFCEHNMPIVLTDIKMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E+ RR E+ P +V+ ITG + L + ++KP R L Sbjct: 61 GLEVLRRIKEISPKTEVIIITGHGDMDLAIKALGLDATDFINKPIQQRSL 110 >gi|255013833|ref|ZP_05285959.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 878 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 13/125 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ D+ ++ + L A Y+++ NGA + E+ L+LTD++MPEMD Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 683 Query: 61 GIELARRA--TELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL RR +E+ + ++ IT + L ++A L KPF+ +L Sbjct: 684 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADA-----YLEKPFNAEELNIR 738 Query: 114 VNRLL 118 + +LL Sbjct: 739 ITKLL 743 >gi|251798357|ref|YP_003013088.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545983|gb|ACT03002.1| two component transcriptional regulator, AraC family [Paenibacillus sp. JDR-2] Length = 267 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 9/87 (10%) Query: 4 KILLAEDD----DDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPE 58 K+L+A+D+ + MR F+ + G EVV+ NNG AY+ ++ +L+TD+ MP Sbjct: 3 KVLIADDEVLDLEGMRLFI--PWTELGLEVVAAVNNGFDAYEVLKGGKIDILVTDVHMPS 60 Query: 59 MDGIELARRATELDP--DLKVMFITGF 83 M G+ELAR+A E + L+V+F++G+ Sbjct: 61 MSGLELARKAQETESCLGLRVIFVSGY 87 >gi|116619730|ref|YP_821886.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116222892|gb|ABJ81601.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 603 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 9/120 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPE 58 ++ ILL +D++ +R+ L GY V++ G +A Y+K LLLTDIVM E Sbjct: 485 SETILLVDDEEGVRKLCSAVLETNGYTVLAAAGGPAAIAAYEK-NAHKVDLLLTDIVMSE 543 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G EL R+ E P LK+++++G+ ++ LSKPF L+ +V +L Sbjct: 544 MSGFELGRKLAERTPSLKILYMSGYRENIVD-----KPEILFLSKPFTPDALLQKVREVL 598 >gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 218 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED++ + F+ K L AGY+ V+ ++GA A D L+L D+ +P +DG E Sbjct: 3 RILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDGFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R L V+ +T + D ++KPF +L+ V L Sbjct: 63 VLRTLRGQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRL 117 >gi|295399822|ref|ZP_06809803.1| response regulator receiver protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978225|gb|EFG53822.1| response regulator receiver protein [Geobacillus thermoglucosidasius C56-YS93] Length = 119 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MR + L K G+EVV+ +G A +K +E ++ DI MPEMDGI Sbjct: 3 RILVVDDAAFMRMMIKDILTKNGHEVVAEAADGLQAIEKYKETHPDIVTMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++D + KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 63 TALKEIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFVVKPFQADRVIEAINKTL 118 >gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 8/118 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD + L +ALG+ GYEV + G +A +V +++ D+ +P+MDG++ Sbjct: 3 KVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMDGLD 60 Query: 64 LAR--RATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR RA + P L + TG + + DS A ++KPF L +L+ V LL Sbjct: 61 VARTIRAQGITIPILILTARTGEVDMVVGLDSGAD---DYVTKPFRLGELLARVRALL 115 >gi|254420539|ref|ZP_05034263.1| hypothetical protein BBAL3_2849 [Brevundimonas sp. BAL3] gi|196186716|gb|EDX81692.1| hypothetical protein BBAL3_2849 [Brevundimonas sp. BAL3] Length = 122 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL +D +R L AL AGY V NGA +K + F L++TD+ MP MD Sbjct: 1 MTASILTVDDSPSIRVALKIALTNAGYSVAEAVNGAEGIEKAKASAFDLIITDLNMPVMD 60 Query: 61 GIELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ + + PD + ++F+T + + A L+KPF LV ++ Sbjct: 61 GLTMIEEMRRM-PDQMGVPIVFLTTESDEGFKARAKAAGATGWLTKPFDPDQLVRVAKKV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|189425992|ref|YP_001953169.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189422251|gb|ACD96649.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 451 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD R L L GYE+V +G +A ++ + F L+L+D+ +P ++G+E Sbjct: 6 RILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLPGLNGLE 65 Query: 64 LARRATELDPDLKVMFITGFA----AVALNPDSNAPKNAKVLSKPFHLRDLVN 112 L RRA + +T F AVA + A K L P LR LV Sbjct: 66 LFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVR 118 >gi|162450323|ref|YP_001612690.1| two component response regulator [Sorangium cellulosum 'So ce 56'] gi|161160905|emb|CAN92210.1| two component response regulator [Sorangium cellulosum 'So ce 56'] Length = 124 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 +ILL ED D +RR + +G +G+EV+ G A ++ EPF +LL D+++P MDG Sbjct: 2 RILLCEDQDAIRRMIEALVGASGHEVIGVGTGREAVERALTEPFDVLLLDLMLPGSMDGF 61 Query: 63 ELARR 67 E+ R Sbjct: 62 EVCER 66 >gi|120437378|ref|YP_863064.1| two-component response transcriptional regulator [Gramella forsetii KT0803] gi|117579528|emb|CAL67997.1| two-component system response regulator containing sigma-54 interaction domain [Gramella forsetii KT0803] Length = 450 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD L L K Y+V + + A+ K+ F L+LTD+ +P+ DG+E Sbjct: 3 KVLVVEDDVAFGTMLKTFLEKRNYKVTLVYSASEAFKKISSNKFDLVLTDVRLPDNDGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + +P +V+ +T +A +++ ++ +SKPF ++ + L Sbjct: 63 ILKNVKAENPSTQVIVMTSYAEISMAVNAMKEGAFDYVSKPFRPESILQTIENAL 117 >gi|86156730|ref|YP_463515.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773241|gb|ABC80078.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 465 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D ++MR+ L K L GY V +GA A V + +++TDI MP DG E Sbjct: 7 RVLVADDKENMRKLLAKILAD-GYAVEEAEDGARALSLVATRAYDVVVTDIRMPGADGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS 92 L PD +V+ +TG+A + PD+ Sbjct: 66 LLGAVKARAPDTEVVMMTGYATI---PDA 91 >gi|77456515|ref|YP_346020.1| two component, sigma-54 specific, Fis family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77380518|gb|ABA72031.1| putative sigma-54 interactive two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 462 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +++ + ++ + ++++DI MP MDG+E Sbjct: 8 QVVLIDDDPHLRQALGQTLDLAGLKILPLSEAKGLAAQLERDWPGVVVSDIRMPGMDGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L DP+L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 68 LLSELHAQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALR 125 >gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 233 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++++ L L K GY V +G A V +P LL+ DI+MP+MDG E+ Sbjct: 6 ILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 RR E ++ ++F++ + ++KPF +LV VN Sbjct: 66 TRRIRETH-NMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVN 115 >gi|330962683|gb|EGH62943.1| type 4 fimbriae expression regulatory protein pilR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 446 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A A++ + EPF + LTD+ +P+ +G+ Sbjct: 5 QKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 EL + P + V IT + + ++KP LR+LVN Sbjct: 65 ELVQHIQHGYPQVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVN 117 >gi|307943050|ref|ZP_07658395.1| PAS/PAC sensor hybrid histidine kinase [Roseibium sp. TrichSKD4] gi|307773846|gb|EFO33062.1| PAS/PAC sensor hybrid histidine kinase [Roseibium sp. TrichSKD4] Length = 769 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 N ILL ED+DD+R L GY V+ +G + ++ S +L DI MP M Sbjct: 644 NSTILLVEDEDDLRDIANSLLDVLGYRVLFAQDGKEGVEIYAANKDLISAVLLDINMPRM 703 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + +DP++ + ++GFA A + P L KP+ L L + LT Sbjct: 704 DGGQALAEMKAIDPNVCAIIVSGFAEEAQSDILKDPNVFTTLRKPYTLNRLRETLVAALT 763 Query: 120 IK 121 K Sbjct: 764 SK 765 >gi|307706033|ref|ZP_07642856.1| response regulator [Streptococcus mitis SK564] gi|307620452|gb|EFN99565.1| response regulator [Streptococcus mitis SK564] Length = 245 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++G++LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGLQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] Length = 224 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD R + L GY V++ NG A V E L++TD+ MPEMDG E Sbjct: 5 VLVADDDLGTRLSIGDYLEICGYSVITAQNGKQALGLVEEYQPHLIVTDVTMPEMDGYEF 64 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR L P + V+F+T + L KPF L +L + LL Sbjct: 65 VRRV-RLRPAFRLLPVIFLTERTSTQERIRGYQLGADNYLRKPFELEELGAVIRSLL 120 >gi|258593571|emb|CBE69912.1| Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) [NC10 bacterium 'Dutch sediment'] Length = 487 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 53/113 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R L L GY V + G A + +E+ + L+LTD+ MP DG+ Sbjct: 5 RILVVDDEGPQREILRTILSAEGYSVETAPGGTEALRRCQEKSYDLVLTDLRMPGTDGLS 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R DP V+ +T + ++ + L+KP +L+ V R Sbjct: 65 LVERLIRDDPPTLVVLMTAYGSLDSAEQALKKGAFDYLTKPLEREELLLTVKR 117 >gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 225 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++P D Sbjct: 1 MNVRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + E + V+ +T + V L KPF LR+L+ V L+ Sbjct: 61 GWEILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|322417862|ref|YP_004197085.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320124249|gb|ADW11809.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 456 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L + L K GYEV + G A REE L+L D +P ++G+E Sbjct: 5 KIMVVDDEHLIRWSLEQNLKKQGYEVYTAGTGEDALRIAREEQPELVLLDYHLPGINGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R E+D ++ V+ +T + ++ ++KPF+L ++ V + L Sbjct: 65 VLQRLKEIDEEILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEMALVVRKAL 119 >gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 228 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD ++ FL +AL AGYEV + +NG L++ D +MP+MDGIE+ Sbjct: 6 ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R D ++ ++ +T V+ L KPF +L+ V LL Sbjct: 66 CKRLRSAD-NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALL 118 >gi|197250760|ref|YP_002147681.1| DNA-binding response regulator TctD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214463|gb|ACH51860.1| DNA-binding response regulator TctD [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 224 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP MDG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF L +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEEL 108 >gi|29348743|ref|NP_812246.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340649|gb|AAO78440.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1354 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L+ + + Y+V + ++G A D ++++ S++L+D+VMP M G Sbjct: 1092 DAKMLIVEDNESIKQMLV-GIFETFYQVTTASDGVEALDIIQKDMPSIILSDVVMPRMSG 1150 Query: 62 IELARRA-TELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T AV N + ++KPF+ L++ N L+ Sbjct: 1151 TELCKQVKTDFNTCHIPVVLLTARTAVEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1209 >gi|332093887|gb|EGI98941.1| acetoacetate metabolism regulatory protein atoC [Shigella boydii 5216-82] Length = 299 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|298375583|ref|ZP_06985540.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268083|gb|EFI09739.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 826 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 13/125 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ D+ ++ + L A Y+++ NGA + E+ L+LTD++MPEMD Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 683 Query: 61 GIELARRA--TELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL RR +E+ + ++ IT + L ++A L KPF+ +L Sbjct: 684 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADA-----YLEKPFNAEELNIR 738 Query: 114 VNRLL 118 + +LL Sbjct: 739 ITKLL 743 >gi|223985998|ref|ZP_03636030.1| hypothetical protein HOLDEFILI_03336 [Holdemania filiformis DSM 12042] gi|223962054|gb|EEF66534.1| hypothetical protein HOLDEFILI_03336 [Holdemania filiformis DSM 12042] Length = 230 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A D +R+ F L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 T+ Sbjct: 117 FTM 119 >gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] Length = 226 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 56/111 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AEDD +R L+ GY++ NG A D E + DI+MPE++G + Sbjct: 2 KVLIAEDDILIREGLVDIFEDEGYQIAEAANGREALDLYHNEKPDFICLDIMMPEINGYD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R ++D D+ V+F++ + ++KPF +++++ V Sbjct: 62 VCREIRKVDSDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARV 112 >gi|116624450|ref|YP_826606.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116227612|gb|ABJ86321.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 128 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 21/133 (15%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSC---NNGASAYDKVREEPFSLLLTDIVMP 57 M ++L+ +D MR F+ + + +G+E+ C NG A D +R E +LTDI MP Sbjct: 1 MAYRVLITDDSPAMRSFVRRVIELSGFELSHCYEAGNGEEALDLLRREWVDAILTDINMP 60 Query: 58 EMDGIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS--------KPFHL 107 +DG EL RR A EL + A+ ++ D+ + +++LS KPF Sbjct: 61 GVDGEELLRRLAADEL--------LRSVPAIVISTDATENRISRLLSLGARGYVTKPFRP 112 Query: 108 RDLVNEVNRLLTI 120 L E+ R+L + Sbjct: 113 ETLRAELERILGV 125 >gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1] gi|315263676|gb|ADU00418.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1] Length = 1386 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L GY V + +G A + +R EP L+++D++MP +DG+ Sbjct: 630 RVLVADDNADMREYLGRLLRSDGYAVEAVVDGRQALEAIRAEPPDLVISDVMMPRLDGLG 689 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L RA + V+ ++ A + L KPF +L+ V Sbjct: 690 LVSELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARV 742 >gi|297539092|ref|YP_003674861.1| Fis family two component sigma54 specific transcriptional regulator [Methylotenera sp. 301] gi|297258439|gb|ADI30284.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylotenera sp. 301] Length = 456 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MNQ +IL +D+ MRR L +L +AGY+ V NG A +R + L+++D+ MP Sbjct: 1 MNQQKRILAVDDEPHMRRLLEISLRQAGYQPVVAENGKEALTILRNDNIDLVVSDLHMPV 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG++L + D V+ +T ++ + + + +PF L L ++R L Sbjct: 61 MDGLKLLEALRAENIDTPVIIVTAQGEISSAVQAMKLGASDYILRPFDLETLEIAISRAL 120 Query: 119 TI 120 ++ Sbjct: 121 SV 122 >gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135] gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135] Length = 231 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD + L L + GY + +GA + F L+++DI++P++DG EL Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + +P + V+ +T + D + KPF R+L + LL K Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRK 120 >gi|153871221|ref|ZP_02000448.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072313|gb|EDN69552.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 711 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 39/60 (65%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++L EDD R+ +I+ L K G++V+ NG A KV+++ L+L D++MP+MDG E Sbjct: 580 VMLIEDDPTTRQMMIRMLQKVGWQVIEAENGEVALQKVQKQQPDLILLDLMMPKMDGFEF 639 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ +DD+ +R L L K GY+V+ +G ++ + D++MP MDG Sbjct: 457 NSVLLVIDDDETVRDILEAYLSKVGYQVIGAASGPEGIKLAKQMRPDAITLDVMMPGMDG 516 Query: 62 IELARRATELDPDL 75 ++ + + DP+L Sbjct: 517 WDVLSQ-LKADPEL 529 >gi|170724104|ref|YP_001751792.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida W619] gi|169762107|gb|ACA75423.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida W619] Length = 469 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R+ L + L AG +VV+ + +++ + ++++DI MP +DG++ Sbjct: 12 QVLLVDDDPHLRQALSQTLDLAGLKVVALADAQGLAERLEPDWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + D +L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 72 LLEQLHGRDNELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASEALLDSVRRALALR 129 >gi|108763352|ref|YP_629198.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108467232|gb|ABF92417.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 455 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 49/86 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ +MR L K L + G+ V+ + A ++ E F ++LTD+ MP MD Sbjct: 1 MPGRVLVVEDEREMRAMLEKGLTRRGFTPVALPSADEALVRLAAEDFDVVLTDLRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L R PD+ V+ +T F ++ Sbjct: 61 GLALCERIALNRPDIPVVVVTAFGSL 86 >gi|119386915|ref|YP_917970.1| response regulator receiver protein [Paracoccus denitrificans PD1222] gi|119377510|gb|ABL72274.1| response regulator receiver protein [Paracoccus denitrificans PD1222] Length = 123 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ ED+D++ L L +AG+ G A D++R L+L DI++P++ G E Sbjct: 3 HILIVEDEDNIAAALEFLLARAGHSYRRIAGGGGALDEIRANRPDLVLLDIMLPDISGYE 62 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + A RA D++V+ +T +V A ++KPF L +L E+ RLL Sbjct: 63 IVGALRADPALRDVRVLLMTARGSVVERRKGLALGADGFIAKPFELSELRAEIARLLGAT 122 Query: 122 N 122 N Sbjct: 123 N 123 >gi|330888465|gb|EGH21126.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 444 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV K+ E ++LTD+ MP M Sbjct: 1 MLNAVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAKLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|302187736|ref|ZP_07264409.1| response regulator receiver [Pseudomonas syringae pv. syringae 642] Length = 123 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ EDD +R ++ L + Y+V+ + SA V ++ LL+TD +P+M Sbjct: 6 RTILVVEDDAIVRMLIVDVLEELEYKVLEAEDATSALTFVADDSNHIDLLMTDQGLPDMK 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA++ E P L V+F +G++ + + P + KPF + L ++V +L Sbjct: 66 GTALAKKVIEYRPQLPVLFASGYSE-----NIDVPPGMHSIGKPFSIDQLRDKVKSIL 118 >gi|296273538|ref|YP_003656169.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296097712|gb|ADG93662.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 229 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 61/111 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++K+L AED+D +R+ +++ L +VV+ NG SA D++ + +L+ DI MP MDG Sbjct: 12 DKKVLYAEDEDGIRKNVVEILELFFEKVVAVENGMSAMDEMMLNSYDVLIFDICMPHMDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +E ++ + + ++ ++ + + K K L+KP+ L+N Sbjct: 72 LEAIKQIRLKNKKIPIIILSAHTEQSYLWRAVELKITKYLTKPYDKNTLIN 122 >gi|300024259|ref|YP_003756870.1| response regulator receiver protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526080|gb|ADJ24549.1| response regulator receiver protein [Hyphomicrobium denitrificans ATCC 51888] Length = 120 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 ILLA+DD +R + +AL G+ V +G A + P LL+TD+ MP++DGI Sbjct: 4 ILLADDDAAVRDLVRRALSAEGHTVHVTQDGLEALEFFNANGGPIDLLVTDVDMPQLDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LA +A +L V+ ++GF+ + ++KPF L D + +V R Sbjct: 64 SLAEKALTAQSNLAVVLMSGFSDQLERAAGLRARRLLSIAKPFTL-DQIKQVVR 116 >gi|237711528|ref|ZP_04542009.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454223|gb|EEO59944.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1379 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED D+R +L K L A Y ++ NG R+E L++TD++MP M+G E Sbjct: 1119 KLLVVEDHADIRLYL-KVLFSATYNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E DLK I AL D N K ++ + KPF+ L +V RL+ Sbjct: 1178 CCRILKE---DLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234 >gi|226365769|ref|YP_002783552.1| OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226244259|dbj|BAH54607.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 226 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 10/112 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD+ + L +ALG+ GY+V G +A ++ + + LL+ D+ +P MDG+E+ Sbjct: 4 VLLAEDDEAIAAPLSRALGREGYDVTIEQTGPAALEQALDGAYDLLILDLGLPGMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLV 111 R+ +L V+ +T V L+ ++ + KPF L +L+ Sbjct: 64 CRQVRAHSSELAVLMLTARTDEVDFVVGLDAGAD-----DYVGKPFRLAELM 110 >gi|220926833|ref|YP_002502135.1| response regulator receiver protein [Methylobacterium nodulans ORS 2060] gi|219951440|gb|ACL61832.1| response regulator receiver protein [Methylobacterium nodulans ORS 2060] Length = 196 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 6/118 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMP-E 58 Q +L+ EDD +R + L + +VV+C +G +A K R +++ TD+ +P + Sbjct: 72 TQLVLVVEDDPAVRDLAVALLTETVLDVVACESGEAAVALLKQRGNDVAMVFTDVRLPGD 131 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 MDG+ LAR ++L P ++++ +G+A + + P +A + KP+ D++ +V+ Sbjct: 132 MDGVALARAVSQLWPGVRLVVTSGYADGRV---AGLPPSAVYMPKPWRALDVLAQVDH 186 >gi|34329392|gb|AAQ63900.1| mutant NtrC-like activator [Myxococcus xanthus] Length = 455 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 49/86 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ +MR L K L + G+ V+ + A ++ E F ++LTD+ MP MD Sbjct: 1 MPGRVLVVEDEREMRAMLEKGLTRRGFTPVALPSADEALVRLAAEDFDVVLTDLRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L R PD+ V+ +T F ++ Sbjct: 61 GLALCERIALNRPDIPVVVVTAFGSL 86 >gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 254 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 13/125 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMPE 58 +++L+ EDDD +R + +AL G+EV +C +GASA + +P L++ D+++P Sbjct: 24 TRRLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPG 83 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 + G++L R L+ ++ I+ A + +++ +V L KPF LR+LV Sbjct: 84 LGGLDLCRELRRLNNTTPILVIS-----ARDSETDRVLGLEVGADDYLVKPFGLRELVAR 138 Query: 114 VNRLL 118 LL Sbjct: 139 CRALL 143 >gi|16766096|ref|NP_461711.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414742|ref|YP_151817.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181286|ref|YP_217703.1| tricarboxylic transport: regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615674|ref|YP_001589639.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552720|ref|ZP_02346472.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992501|ref|ZP_02573599.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233741|ref|ZP_02658799.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238695|ref|ZP_02663753.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244578|ref|ZP_02669510.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262111|ref|ZP_02684084.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464100|ref|ZP_02698017.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822904|ref|ZP_02834904.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444892|ref|YP_002042026.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450259|ref|YP_002046745.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472936|ref|ZP_03078920.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737394|ref|YP_002115739.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197266024|ref|ZP_03166098.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363670|ref|YP_002143307.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242096|ref|YP_002216758.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386900|ref|ZP_03213512.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929393|ref|ZP_03220467.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353737|ref|YP_002227538.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858053|ref|YP_002244704.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238909555|ref|ZP_04653392.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|325530291|sp|E1WA34|TCTD_SALTS RecName: Full=Transcriptional regulatory protein tctD gi|325530292|sp|P0CL17|TCTD_SALTY RecName: Full=Transcriptional regulatory protein tctD gi|11128401|gb|AAG31204.1|AF020810_5 TctD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|295218|gb|AAA27232.1| membrane associated regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421333|gb|AAL21670.1| tricarboxylic transport regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128999|gb|AAV78505.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128919|gb|AAX66622.1| tricarboxylic transport: regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365038|gb|ABX68806.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403555|gb|ACF63777.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408563|gb|ACF68782.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459300|gb|EDX48139.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712896|gb|ACF92117.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633172|gb|EDX51586.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095147|emb|CAR60696.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197244279|gb|EDY26899.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288507|gb|EDY27884.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936612|gb|ACH73945.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603998|gb|EDZ02543.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321112|gb|EDZ06312.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273518|emb|CAR38501.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322727|gb|EDZ10566.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329319|gb|EDZ16083.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332210|gb|EDZ18974.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336574|gb|EDZ23338.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340766|gb|EDZ27530.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349080|gb|EDZ35711.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709856|emb|CAR34209.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247926|emb|CBG25759.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994894|gb|ACY89779.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159349|emb|CBW18867.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913807|dbj|BAJ37781.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087188|emb|CBY96954.1| Response regulator mprA Mycobacterial persistence regulator A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223577|gb|EFX48642.1| Tricarboxylate transport transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614392|gb|EFY11323.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621543|gb|EFY18396.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624404|gb|EFY21237.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626602|gb|EFY23407.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633538|gb|EFY30280.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638419|gb|EFY35117.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639722|gb|EFY36406.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643768|gb|EFY40318.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649454|gb|EFY45888.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655956|gb|EFY52256.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661351|gb|EFY57576.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662549|gb|EFY58757.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666923|gb|EFY63098.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671293|gb|EFY67416.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677700|gb|EFY73763.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681473|gb|EFY77503.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683872|gb|EFY79882.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715771|gb|EFZ07342.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131137|gb|ADX18567.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193739|gb|EFZ78942.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197473|gb|EFZ82610.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203288|gb|EFZ88317.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205234|gb|EFZ90209.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212753|gb|EFZ97564.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218105|gb|EGA02817.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221632|gb|EGA06045.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227156|gb|EGA11330.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230868|gb|EGA14986.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234781|gb|EGA18867.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238820|gb|EGA22870.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241520|gb|EGA25551.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248333|gb|EGA32269.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252901|gb|EGA36735.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256977|gb|EGA40686.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260548|gb|EGA44159.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264394|gb|EGA47900.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269528|gb|EGA52981.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624516|gb|EGE30861.1| regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628844|gb|EGE35187.1| regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989661|gb|AEF08644.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 224 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP MDG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF L +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEEL 108 >gi|315635889|ref|ZP_07891151.1| two component system response regulator [Arcobacter butzleri JV22] gi|315479868|gb|EFU70539.1| two component system response regulator [Arcobacter butzleri JV22] Length = 135 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 8/125 (6%) Query: 2 NQKILLAEDD----DDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 N K+L EDD +++ FL K LG E+ NG A + + +++TDI MP Sbjct: 11 NIKLLYVEDDLMTQEEVSFFLQKYLG----ELYLAKNGEEAINIFLKNKIDMIITDIQMP 66 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +M+G+E+++R E++P + ++ T + + K +SKPF+L L+ + + Sbjct: 67 KMNGLEMSKRILEINPKIPIIITTAYNDCEYLNQAMDLGIDKYISKPFNLETLLTMIEKS 126 Query: 118 LTIKN 122 L +++ Sbjct: 127 LPLEH 131 >gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] Length = 241 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + + + ++G AY+ E ++ +L D+++PEMD Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE++ + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEMSSKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|224372018|ref|YP_002606183.1| putative sensorkinase/phosphatase protein [Desulfobacterium autotrophicum HRM2] gi|223694737|gb|ACN18019.1| putative sensorkinase/phosphatase protein [Desulfobacterium autotrophicum HRM2] Length = 875 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++ILL +D+ + R + L + GY+V + +N A + P + L+++D+ MP M Sbjct: 749 ERILLVDDEISVVRLEKQMLERLGYKVSAWSNSIEALETFNSNPDGYDLVISDMTMPNMT 808 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA+ + PD+ ++ TGF+ + A K L KP ++ V ++L Sbjct: 809 GDQLAKELMAIRPDIPIIICTGFSERINKEQAEANKVKGFLMKPVVKSEMAQMVRKVL 866 >gi|154495137|ref|ZP_02034142.1| hypothetical protein PARMER_04184 [Parabacteroides merdae ATCC 43184] gi|154085687|gb|EDN84732.1| hypothetical protein PARMER_04184 [Parabacteroides merdae ATCC 43184] Length = 230 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ILL ED+ + + AL + ++V++ NG D+ + L++ D++MPE+DG Sbjct: 4 KKSILLVEDEASLSMIIKDALEEEDFQVITAGNGLQGIDRFYKYAPDLIIADVMMPEIDG 63 Query: 62 IELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR + + ++ V+F++ ++ + + A + KPF LR+LV LL Sbjct: 64 FEMIRRIRKENKEVPVLFLSARSSTDDIVFGFELGANDYVR---KPFSLRELVVRAKALL 120 >gi|300864283|ref|ZP_07109163.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337748|emb|CBN54309.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 942 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D + ++ L G+E++ NG +K E F L+++D+VMP +DG Sbjct: 728 QKILVVDDKWENCSVIVNLLEPLGFEIIEAKNGQEGLEKAAEFKFDLIISDLVMPVLDGF 787 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLT 119 E+ RR P+ K + I +A D + L KP +L + + L Sbjct: 788 EMMRRLRH-SPEYKDVVIVASSASVFATDQHKSLKGGANDFLGKPVQAEELFEMLQKYLK 846 Query: 120 IK 121 I+ Sbjct: 847 IQ 848 >gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 267 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 8/118 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD + L +ALG+ GYEV + G +A +V +++ D+ +P+MDG++ Sbjct: 45 KVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMDGLD 102 Query: 64 LAR--RATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR RA + P L + TG + + DS A ++KPF L +L+ V LL Sbjct: 103 VARTIRAQGITIPILILTARTGEVDMVVGLDSGAD---DYVTKPFRLGELLARVRALL 157 >gi|206895294|ref|YP_002246698.1| putative chemotaxis protein CheY [Coprothermobacter proteolyticus DSM 5265] gi|206737911|gb|ACI16989.1| putative chemotaxis protein CheY [Coprothermobacter proteolyticus DSM 5265] Length = 122 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASA---YDKVREEPFSLLLTDIVM 56 M++++L+ +D MR + L + GYEV +NG A Y+KV+ + +L DI M Sbjct: 1 MSKRVLIVDDAAFMRMMIKNVLTQNGYEVAGEASNGQEALVLYEKVKPDLVTL---DITM 57 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 PEMDGI+ + ++DP V+ +T L ++ + KPF L+ V + Sbjct: 58 PEMDGIQTLKELLKMDPSANVIMVTAMGQQQLVIEAIQVGAKDFVVKPFQPDRLIEAVRK 117 Query: 117 LL 118 L Sbjct: 118 AL 119 >gi|297584049|ref|YP_003699829.1| response regulator receiver protein [Bacillus selenitireducens MLS10] gi|297142506|gb|ADH99263.1| response regulator receiver protein [Bacillus selenitireducens MLS10] Length = 120 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +L+ +D MR + L K G++VV +G A D +E+ L+ DI MPEM Sbjct: 1 MATTVLIVDDAAFMRMMIKDILSKNGFDVVGEAGDGQQAVDMYKEQSPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + DP+ KV+ + A+ D+ + KPF ++ +++ L Sbjct: 61 DGITALKEIKTHDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVLEAISKTL 119 >gi|156744122|ref|YP_001434251.1| CheA signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156235450|gb|ABU60233.1| CheA signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 741 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 8/119 (6%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DD R LI++ L AGYEV + +G A D++R E + L+++D+ MP +DG L Sbjct: 623 LLVVDDSFATRELIRSILSAAGYEVATAVDGLDALDRIRAETYDLVVSDVEMPRVDGFTL 682 Query: 65 ARRA-TEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R +EL DL V+ +T A+ +++ + +V ++ + ++ N+ N L TI+ Sbjct: 683 TSRIRSELGKTDLPVIIVTSLAS-----EAHRRRGLEVGAQAYIVKSQFNQNNLLETIR 736 >gi|83643354|ref|YP_431789.1| CheY-like receiver protein [Hahella chejuensis KCTC 2396] gi|83631397|gb|ABC27364.1| FOG: CheY-like receiver [Hahella chejuensis KCTC 2396] Length = 120 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D MR+ + L AGY+V NG A K + + L++TD+ MP MDGI Sbjct: 3 KILAVDDSASMRQMVTFTLKGAGYQVDEAANGQEALSKAKSGKYDLVITDVNMPVMDGIS 62 Query: 64 L-----ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A A + P ++ +T + + A + KPF+ LV V ++L Sbjct: 63 LIKNLRAEGAYKFTP---LLMLTTESGADKKAEGKAAGATGWIVKPFNPDQLVATVKKVL 119 >gi|332532983|ref|ZP_08408855.1| C4-dicarboxylate transport transcriptional regulatory protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037649|gb|EGI74101.1| C4-dicarboxylate transport transcriptional regulatory protein [Pseudoalteromonas haloplanktis ANT/505] Length = 454 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D+ +R L + L GY V N+ ++A K+ ++L+DI MP MDG+ Sbjct: 8 KHIIVVDDEAMIRDSLKQLLTLEGYTVECFNDASTALTKLNRRFMGVVLSDINMPAMDGL 67 Query: 63 ELARRATELDPDLKVMFITGFAAVAL 88 L + T D +L V+F+TG+A V + Sbjct: 68 TLLEQVTAFDSELPVIFLTGYADVTI 93 >gi|319794228|ref|YP_004155868.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] gi|315596691|gb|ADU37757.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] Length = 752 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPE-MD 60 +L+ +D+ +R +++ + GY + +GA A ++ + P LL++D+ +P M+ Sbjct: 633 VLVVDDEPALRMIIVEVMRGLGYATLEAADGAGAL-RILQSPRQRIDLLVSDVGLPGGMN 691 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A P LKV+FITG+A A+ + + V++KPF + L V L+ Sbjct: 692 GRQVADAARTARPGLKVLFITGYAENAVLSHGHLDRGMHVMTKPFEMDVLARRVKALI 749 >gi|320107338|ref|YP_004182928.1| Fis family two component sigma54 specific transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925859|gb|ADV82934.1| two component, sigma54 specific, transcriptional regulator, Fis family [Terriglobus saanensis SP1PR4] Length = 468 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M QK IL+ +DD +RR + L +AGYEV ++G A+ K++E L++TD+ MP Sbjct: 1 MKQKHILVVDDDSSLRRVMKMQLEEAGYEVSLASDGEEAWIKLQETEPYLVITDLRMPTT 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+EL R T+ V+ IT F V ++ ++KP L+ V+R + Sbjct: 61 -GLELLRCITKEGLQTTVIVITAFGTVETAVEAMKLGAYDYVTKPVDFDALLVVVHRAME 119 Query: 120 IKN 122 +N Sbjct: 120 RQN 122 >gi|258626569|ref|ZP_05721405.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603] gi|258581160|gb|EEW06073.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603] Length = 573 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 N IL+ ED + + L K GY+V NG A + + + F L+L DI MP MD Sbjct: 451 NYHILVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEKSNAFDLVLMDISMPIMD 510 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI R+ D D+ ++ +T A + + ++ KP +D++N VNR L Sbjct: 511 GIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRGKDIMNVVNRFL 568 >gi|192361059|ref|YP_001981583.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190687224|gb|ACE84902.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 198 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAED +R L LG + G+E+ +G A+ ++++ F +LLTDI MP G+ Sbjct: 2 KILLAEDQSMVRGALAALLGMEEGFEITQAEDGDRAWLMMKQQSFDILLTDIEMPGRSGL 61 Query: 63 ELARRATELDPDLKVMFITGFA 84 ELA+ + K++ IT F Sbjct: 62 ELAQWVLQQKLPTKIIIITTFG 83 >gi|218437440|ref|YP_002375769.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218170168|gb|ACK68901.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 703 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 12/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA-------YDKVREEPFSLLLTDIVMP 57 IL+ +D+ ++ + L GY+V++ NNG A +DK+ +L D++MP Sbjct: 586 ILVVDDEANINQTTKHLLNTFGYQVLTANNGIEALALYAQYHDKIEA-----ILMDMIMP 640 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDGI R +++P +K++ +G +++ + D L KP+ +DL+ + ++ Sbjct: 641 SMDGITAIRTLQKINPQVKIIATSGLSSIEESADIFDDNVKAFLHKPYTSQDLLTTLYKV 700 Query: 118 LT 119 L+ Sbjct: 701 LS 702 >gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces ambofaciens ATCC 23877] Length = 1368 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+A+D+ DMR +L + L AGY+V + ++G +A + VR + L+++D++MP +DG+ L Sbjct: 621 LVADDNADMREYLTRLLDGAGYQVDTVDDGLAALEAVRADAPDLVISDVMMPGLDGLGLV 680 Query: 66 RRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A DP + V+ ++ A + + L KPF +L+ V Sbjct: 681 -AALRTDPRTVSVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARV 731 >gi|119490861|ref|ZP_01623144.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106] gi|119453679|gb|EAW34838.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106] Length = 1161 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 4/124 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+ +D+ D+RR+L L A + VV NGA +++ + +++TD++MP + Sbjct: 802 LENTILVVDDNPDLRRYLSNILKPAKFHVVMARNGAEGFEQAKTYRPEVIITDLMMPVVS 861 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G++L R E D L+ ++ +T A + +SKPF+ R+L+ EV L Sbjct: 862 GLDLIRMIRE-DVQLRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELLAEVRNL 920 Query: 118 LTIK 121 +K Sbjct: 921 RALK 924 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 KIL+ +D+ D L + +A Y+V+ ++ A + + +EE +++++D MP+M G Sbjct: 10 KILVVDDEPDNLDLLYRTFYRA-YKVLRADSAPQALEILAQEEDVAVIISDQRMPQMSGT 68 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 EL A PD + +TG+ V L N+ + K ++KP+ +L VN+ L Sbjct: 69 ELLSVAATQYPDAIRILLTGYTDVEDLVEAINSGQVFKYVTKPWEAEELKVIVNQALETH 128 Query: 122 N 122 N Sbjct: 129 N 129 >gi|116626896|ref|YP_829052.1| two component sigma54-specific Fis family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230058|gb|ABJ88767.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Solibacter usitatus Ellin6076] Length = 457 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD + L +A AG+E C+N + A + V+ + F ++L+D+VMP DG+ L Sbjct: 4 LLIVDDDANTLASLARAFRLAGHEATVCDNASRALELVKGQGFDMMLSDVVMPGKDGLTL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L L V+ I+G A + + + L KP L+ V+ +L +K Sbjct: 64 LEEVRGLGITLPVVMISGQANIEMAVRATRLGAIDFLEKPLSTDKLLLTVDNVLKLK 120 >gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51] gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 225 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +DD +R + L + G++ +G A +K+ E SL + D++MP MDG E Sbjct: 3 KIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLMMPNMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ + DL V+ +T L+KPF +L+ V LL Sbjct: 63 LCRQLRQYYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALL 117 >gi|317122699|ref|YP_004102702.1| response regulator receiver protein [Thermaerobacter marianensis DSM 12885] gi|315592679|gb|ADU51975.1| response regulator receiver protein [Thermaerobacter marianensis DSM 12885] Length = 124 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D MR L L +AG+ V+ NGA A + ++E L++ DI MP MDG+ Sbjct: 3 RILIADDASFMRLRLGTLLKEAGHTVLEAANGAEAVETYQKEHPDLVILDITMPVMDGLA 62 Query: 64 LARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LDP +++ + G ++ L K+ V KPF +V V R+L+ Sbjct: 63 AMEAILHLDPKARIIVCSSLGQQSIVLQAIRAGAKDFVV--KPFQPERVVAAVERVLS 118 >gi|315123064|ref|YP_004065070.1| response regulator [Pseudoalteromonas sp. SM9913] gi|315016824|gb|ADT70161.1| response regulator [Pseudoalteromonas sp. SM9913] Length = 192 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R + + L ++G++VV G A + + L+ D+ MP + GIE Sbjct: 68 QVLIIDDEANVRSVIKRVLKRSGFDVVEAAGGFEAGTLMHQRKPELITVDLSMPGLSGIE 127 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R R+ E D+KV+ I+G L NA + + KPF L+N VN L Sbjct: 128 VIRFIRSCEEFKDIKVLVISGMPETQLIDAVNAGADGYI-CKPFSNDTLINSVNILF 183 >gi|301063485|ref|ZP_07204017.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] gi|300442424|gb|EFK06657.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] Length = 453 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 56/113 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD D R L L + GYE ++ +G +A ++ E L+L D MP + G Sbjct: 9 KILIVDDDPDQRELLKGFLDRQGYETLTAGDGETALHLLKREMVQLVLLDHRMPGLTGDA 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + + E +P +V+ IT F V + ++ + L KP L L+ + + Sbjct: 69 VLAKIRETNPTQRVIMITAFGDVDMAVNAMKMGACEFLEKPVDLSLLLKRIQQ 121 >gi|289677370|ref|ZP_06498260.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 214 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M Sbjct: 86 GETVLIVDDEPSVRMLVAEVISGLGYNCLEAADAQSGLQILQSDTRIDLLISDIGLPGGM 145 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 146 NGREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 204 >gi|302384109|ref|YP_003819932.1| Fis family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302194737|gb|ADL02309.1| two component, sigma54 specific, transcriptional regulator, Fis family [Brevundimonas subvibrioides ATCC 15264] Length = 445 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + + L +DDDD R L + L YEV + + +A ++ + +++TD+ MP +DG Sbjct: 7 RAVALIDDDDDFREALHERLALEAYEVQAFGSAEAALKRIGPDFPGVVVTDLRMPGIDGR 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R +D L V+ ITG +A D+ ++KPF L +NR L Sbjct: 67 ALLSRLQAIDDGLPVVMITGHGDIAEAVDALTQGAYDFVAKPFAFERLATSLNRAL 122 >gi|257486466|ref|ZP_05640507.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987804|gb|EGH85907.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 444 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV K+ E ++LTD+ MP M Sbjct: 1 MLNAVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAKLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 236 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED++ + L L + GY V +G A + F L++ D+++P +DG E Sbjct: 8 RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +AR + P L ++ +T L+KPFHL++L+ V +L K Sbjct: 68 VAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQ 126 >gi|255691095|ref|ZP_05414770.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623447|gb|EEX46318.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1444 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD+D+R+FL + +G +EV +G S ++K L++ D++MP M G Sbjct: 1171 RKILIIEDDNDIRQFLQEEIG-VYFEVEVAADGISGFEKATTYDADLIICDVLMPGMTGF 1229 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL ++ L D I ALN + + ++KPF ++ L+ V RL Sbjct: 1230 ELTKK---LKTDFATSHIPIILLTALNSAEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1286 Query: 118 L 118 + Sbjct: 1287 I 1287 >gi|220904833|ref|YP_002480145.1| response regulator receiver protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869132|gb|ACL49467.1| response regulator receiver protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 126 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE------EPFSLLLTDIVMP 57 + L +D+ + + K L + G EVV+ +G +A + V E EPF++++ D+ MP Sbjct: 2 RALFVDDELEFLELMQKRLARRGMEVVTAPDGQTALNMVEENLASGGEPFNIVVMDVRMP 61 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 MDG+E R + P L V+ +TG A + + + + KP + +L+ Sbjct: 62 GMDGLETLRHMKQKSPGLPVILLTGHACMGVAVEGLDLGAYDYMLKPVAISELI 115 >gi|212692193|ref|ZP_03300321.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855] gi|212665314|gb|EEB25886.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855] Length = 1373 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED D+R +L K L A Y ++ NG R+E L++TD++MP M+G E Sbjct: 1113 KLLVVEDHADIRLYL-KVLFSATYNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1171 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E DLK I AL D N K ++ + KPF+ L +V RL+ Sbjct: 1172 CCRILKE---DLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1228 >gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAEGHAVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|170750658|ref|YP_001756918.1| histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170657180|gb|ACB26235.1| histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 575 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 1/112 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 ++L+ +DD ++R L +AGY V +G A + +P L++ D MP M+G Sbjct: 442 RLLVVDDDAEVREVTTTRLIEAGYAVREAASGLQALAALEADPAVDLVVMDFAMPGMNGA 501 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E A + P L V+F+TGFA + + A ++ KPF + +L +V Sbjct: 502 ETALEVRKRWPALPVLFVTGFADTSALTKAGAVGTDAIVLKPFRVGELEGKV 553 >gi|197124469|ref|YP_002136420.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196174318|gb|ACG75291.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 123 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 +IL+ EDD +R + + L + GY V +NGA A D++ ++P +L++ D++MP MDG Sbjct: 6 RILVVEDDVAIRETIAELLQEEGYAVSCASNGAEALDRLAAVDQPPNLIVLDLMMPIMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 R DP L + + +A DS A N L KPF L V+ V+RL Sbjct: 66 WAF-RSVQREDPRLSAIPVLVLSA-GHGGDSRAVANLAAEAFLPKPFDLASFVDAVHRL 122 >gi|150003100|ref|YP_001297844.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931524|gb|ABR38222.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1340 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL Sbjct: 1090 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1148 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1149 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1207 >gi|153217166|ref|ZP_01950930.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae 1587] gi|124113809|gb|EAY32629.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae 1587] Length = 450 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGTSALAAIEQQNFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|110644400|ref|YP_672130.1| two component response regulator [Escherichia coli 536] gi|110345992|gb|ABG72229.1| two component response regulator [Escherichia coli 536] Length = 452 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 18/136 (13%) Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 MN K I+ ED DD+R + L AGY V+SC + + ++ + ++LTD+ Sbjct: 1 MNNKSSEITIVYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSISLIQSQANIIILTDVR 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPD-------------SNAPKNAKVLS 102 +P + G+EL E+D + V+ ITG V + D S++ K +++ Sbjct: 61 LPGISGLELLSYINEMDSKIPVILITGHGDVEMAVDAMRNGAFDFIEKPSSSDKLLSIIA 120 Query: 103 KPFHLRDLVNEVNRLL 118 + R LV E +LL Sbjct: 121 RAVEKRRLVLENQQLL 136 >gi|94969525|ref|YP_591573.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] gi|94551575|gb|ABF41499.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] Length = 367 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL+ +D++ +R + L AGY+ +G A + E F L+L+D++M E+DGI Sbjct: 5 RILVVDDEEPIREIVSSMLSNAGYKTQQAGSGLQALAVLESGEEFELMLSDLMMAELDGI 64 Query: 63 ELARRATELDPDLKVMFITGFA--AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +T +VAL N + L KPF L+ V R L Sbjct: 65 GLLEKTKERYPDMPVVMVTAVHDISVALAAIRNGAYD--YLLKPFEREQLLAMVRRAL 120 >gi|27381216|ref|NP_772745.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27354383|dbj|BAC51370.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 131 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDI-VMPEMDG 61 IL+ ED++ ++ + AL + G+++ + +G A V +S L+TD+ + M G Sbjct: 11 ILVVEDEEPLQEIVHDALKEGGFDLTTVASGQEAVAMVESGVVKYSALVTDVNLKGPMKG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+AR ++DP V+++TG A A + S N+ +L KPF LV V++LL Sbjct: 71 WEIARLIRQIDPAFPVVYMTG--AAAEDWASEGVPNSVLLEKPFAPAQLVTAVSQLL 125 >gi|191172038|ref|ZP_03033583.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli F11] gi|300980464|ref|ZP_07175011.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 200-1] gi|190907803|gb|EDV67397.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli F11] gi|300307766|gb|EFJ62286.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 200-1] gi|324014863|gb|EGB84082.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 60-1] Length = 452 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 18/136 (13%) Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 MN K I+ ED DD+R + L AGY V+SC + + ++ + ++LTD+ Sbjct: 1 MNNKSSEITIVYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSISLIQSQANIIILTDVR 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPD-------------SNAPKNAKVLS 102 +P + G+EL E+D + V+ ITG V + D S++ K +++ Sbjct: 61 LPGISGLELLSYINEMDSKIPVILITGHGDVEMAVDAMRNGAFDFIEKPSSSDKLLSIIA 120 Query: 103 KPFHLRDLVNEVNRLL 118 + R LV E +LL Sbjct: 121 RAVEKRRLVLENQQLL 136 >gi|326408629|gb|ADZ65694.1| Transcriptional regulatory protein PHOP [Brucella melitensis M28] gi|326538351|gb|ADZ86566.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis M5-90] Length = 229 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L +A+ AGY V S +G + EP+ ++ DI +P+MDGI Sbjct: 2 RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGAD---DYVAKPFHIEEVLTRLRALI 116 >gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 657 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 4/114 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++D L+ L GY + NG A D RE +L DI MP MDGIE Sbjct: 537 ILLAEDNEDNISLLLDFLPFHGYALTIARNGQEALDLARECHPDAILMDIQMPVMDGIEA 596 Query: 65 ARR-ATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEV 114 RR + DP L + A+A+ D + A + KP L DL +++ Sbjct: 597 IRRLRADPDPGLAHTPVIALTALAMPGDRDRCLAAGADAYIVKPLVLHDLPDQI 650 >gi|265752955|ref|ZP_06088524.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236141|gb|EEZ21636.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1379 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED D+R +L K L A Y ++ NG R+E L++TD++MP M+G E Sbjct: 1119 KLLVVEDHADIRLYL-KVLFSATYNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E DLK I AL D N K ++ + KPF+ L +V RL+ Sbjct: 1178 CCRILKE---DLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234 >gi|237726015|ref|ZP_04556496.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435823|gb|EEO45900.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1379 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED D+R +L K L A Y ++ NG R+E L++TD++MP M+G E Sbjct: 1119 KLLVVEDHADIRLYL-KVLFSATYNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E DLK I AL D N K ++ + KPF+ L +V RL+ Sbjct: 1178 CCRILKE---DLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234 >gi|126698112|ref|YP_001087009.1| chemotaxis protein [Clostridium difficile 630] gi|115249549|emb|CAJ67366.1| Chemotaxis protein CheY [Clostridium difficile] Length = 120 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M KIL+ +D MR + +AL K+GY ++ N+G A + + E L+L DI MP+ Sbjct: 1 MENKILIVDDAIFMRMIIKEALSKSGYNNLIEANDGEEACNIFKYEKPDLMLLDITMPKK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E+ R +LD KV+ + + ++ + KPF LV V+ L Sbjct: 61 DGLEVLREIKKLDSSAKVVMCSAIGQENMIVEAIKLGALDFIVKPFKTETLVKVVDNAL 119 >gi|94265045|ref|ZP_01288813.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454478|gb|EAT04766.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 462 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDDD R+++KA L + G++ +G +A + VR++PF +L D+ M MDG+E Sbjct: 10 ILVVDDDDAHRYMLKAMLAQWGWQTAEAVDGQAAVEAVRQQPFDAVLMDVRMARMDGMEA 69 Query: 65 ARRATELDPDLKVMFITGFAAV 86 +P + V+ +T ++++ Sbjct: 70 LGLIQAHNPAIPVVIMTAYSSI 91 >gi|86138309|ref|ZP_01056883.1| sensory box sensor histidine kianse/response regulator [Roseobacter sp. MED193] gi|85824834|gb|EAQ45035.1| sensory box sensor histidine kianse/response regulator [Roseobacter sp. MED193] Length = 771 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 8/116 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEP---FSLLLTDIVMPEM 59 +LL ED+ +R F +AL GY V+ SA D +R E+P + +TD+VMP M Sbjct: 655 VLLVEDEAPVRAFASRALRMRGYTVLEAE---SAEDALRTLEDPGLTVDVFVTDVVMPGM 711 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 DG R A + PD +V+F++G+A A N+ L KPF L L V+ Sbjct: 712 DGPSWVREALKTRPDTRVVFVSGYAEGAFGESEPDVPNSVFLPKPFSLNQLTETVH 767 >gi|119718578|ref|YP_925543.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119539239|gb|ABL83856.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 494 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++++ +D D+R L AL +AGY VV +G + + VRE+ L++ D+ MP +DG Sbjct: 11 RRVVIVDDTPDLRALLRIALERAGYVVVGEAGDGRAGIEVVREQRPDLVMLDLSMPVLDG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E L PD ++ ++GF ++ + A + K LR ++ VN L+ Sbjct: 71 LEALPPIRRLIPDGTIVVLSGFGPTTMSERALARGADGYVQKGAPLRSIIQSVNGLV 127 >gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] Length = 234 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 48/80 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L K GY+VVS ++G AY+ +PF ++ D+++P MDGI Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPNMDGI 61 Query: 63 ELARRATELDPDLKVMFITG 82 E+ ++ + + ++ +T Sbjct: 62 EITKKLRQEKIETPILVLTA 81 >gi|302385369|ref|YP_003821191.1| two component transcriptional regulator, AraC family [Clostridium saccharolyticum WM1] gi|302195997|gb|ADL03568.1| two component transcriptional regulator, AraC family [Clostridium saccharolyticum WM1] Length = 511 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSC---NNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+++AED+ ++ L+K L + ++ C G A D + + L++TDI MPEMD Sbjct: 2 KVIVAEDEYYAKKMLVKLLTNSTMDITVCLEAETGKQAADYLAGQDADLVITDIRMPEMD 61 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+ LA+ E P VM ++G++ Sbjct: 62 GLSLAKYVEEHCPATDVMIVSGYS 85 >gi|298384668|ref|ZP_06994228.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298262947|gb|EFI05811.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1420 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ + Y V+ NG A + P +++D++MP MDGIEL Sbjct: 1169 ILVVEDNADMRGY-IRSILREQYHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIEL 1227 Query: 65 ARRATE 70 +RR E Sbjct: 1228 SRRVKE 1233 >gi|296271901|ref|YP_003654532.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096076|gb|ADG92026.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 226 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L DD+ + +I + Y + NG S Y+ + SL+++DI MP M+ Sbjct: 1 MGKLTILVVDDESINIQIISEILTDIYNIKIAKNGKSGYEAYEKYSPSLIISDINMPLMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 GIE+ + + D + KV+F T + + S++ K K + KP +L+ VN Sbjct: 61 GIEMVSKIRQKDQNTKVIFTTSHSELDYLLQSSSLKLTKYILKPIQREELLEAVN 115 >gi|167645350|ref|YP_001683013.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347780|gb|ABZ70515.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 695 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL ED+D +R + L GYEV+ +G A E LL++D++MP +DG Sbjct: 576 RILFVEDEDAVRGVAARLLRARGYEVLEACDGEEALIIAEEHAGTIDLLISDVIMPGIDG 635 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++A + VMFI+G+A + L KP ++ L V + L Sbjct: 636 PTLLKKARPYLGNAPVMFISGYAEAEFSDLLEGETGVTFLPKPIDIKTLAERVKQQL 692 >gi|107028322|ref|YP_625417.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia cenocepacia AU 1054] gi|116686318|ref|YP_839565.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia cenocepacia HI2424] gi|105897486|gb|ABF80444.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia cenocepacia AU 1054] gi|116652033|gb|ABK12672.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia cenocepacia HI2424] Length = 472 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ ++ L + AGY++V+ ++G +A + + L+++D+ MP M G E Sbjct: 34 ILLVDDEPNVVSALRRVFRPAGYDIVTADSGETALEILASTDIDLIVSDMRMPHMSGAEF 93 Query: 65 ARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG+A +A + N + L+KP+ DL+ + + L Sbjct: 94 LARARALYPDTMRILLTGYAELASVVQAVNEGGVYRYLNKPWDDHDLLLTIEQAL 148 >gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM 22836] Length = 229 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ + L K L + GY V +G V + L++TD+++P ++G Sbjct: 2 KKILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMGKRLVNNHIYDLIITDVILPHINGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL + + P++ ++ +T D + KPF LR+L ++ LL KN Sbjct: 62 ELCKEIRAVHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLKRKN 121 >gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 675 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 11/126 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIV 55 + +IL+A+D D +R L + L +AG +V NG A + PF+L+L D+ Sbjct: 532 LTGRILVADDGIDNQRLLRQILTRAGADVTVAENGLEAVRAWQAANLAGCPFALILMDMQ 591 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVN 112 MPE+DG + RR EL + ++ +T A A+ D + A L+KPF + L+ Sbjct: 592 MPELDGYQATRRLRELGATIPIIALT---AHAMTGDRDLCLQAGCDDYLTKPFERKRLLE 648 Query: 113 EVNRLL 118 + + L Sbjct: 649 TLRKRL 654 >gi|262118598|pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism gi|262118599|pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism gi|262118600|pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism gi|262118601|pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism Length = 122 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+LL +D +R+ + L K GYEV+ NG A +K+ E L++ I+MP MD Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 G + ++ E + ++ I A +S A KV+ KPF + EV LL Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 >gi|284037825|ref|YP_003387755.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283817118|gb|ADB38956.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 54/106 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++ + F+ K + GYEV ++G + R + + +++ D+ +P M+G + Sbjct: 2 KILLVEDEERLASFIRKGISAEGYEVEVAHDGRTGLSLFRRDIYDIIILDVNLPHMNGFD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 L R + + V+ +T ++A D L+KPF ++ Sbjct: 62 LCRHIRSENEAVPVLMLTALDSMADKSDGFNAGADDYLAKPFEFQE 107 >gi|253698719|ref|YP_003019908.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M21] gi|251773569|gb|ACT16150.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M21] Length = 357 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD + + L +G+EV S +NG A +R P ++LTD+ MP M GIE Sbjct: 8 RVVLVDDDPYVLESVALLLSVSGFEVTSFSNGHEALALLRHSPPDVVLTDVNMPLMSGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + + D D+ V+ +T +A + + + + KPF L+ V + Sbjct: 68 LLEQIHDFDRDIPVILMTAYAELEMAVSAIKKGAFDFIIKPFKTPYLIYAVEK 120 >gi|168182092|ref|ZP_02616756.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793617|ref|YP_002861169.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182674528|gb|EDT86489.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229260586|gb|ACQ51619.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 224 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+ L ED+ + L K L GYEV + NG+SA +++++ L + DI++P++D Sbjct: 1 MGRKVYLVEDEKSLNILLEKYLQCEGYEVTTFFNGSSAIERIKDVS-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ + E + + V+F++ + L D LSKPF R+L+ Sbjct: 60 GYQIIKAVKENNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELIIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|163845836|ref|YP_001633880.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523547|ref|YP_002568017.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667125|gb|ABY33491.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447426|gb|ACM51692.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 642 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 ++ +L+ ED+ + + AL GY+V+ + + LL+TD+++P + Sbjct: 524 HETVLVVEDEPAVLHLIASALRLHGYQVIEATDAQYGLGLAASHQGTIDLLITDVMLPTL 583 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G EL R+ L P +V++I+ + ++ + P +L+KPF L+ L+ +V +LT Sbjct: 584 NGDELYRQLRGLYPQARVLYISAY----VDSEHVGPDVTPILAKPFTLQRLLQQVRAILT 639 >gi|302344107|ref|YP_003808636.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640720|gb|ADK86042.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1027 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL +D+ +R K L + GY V +G A + +P L++ D+ MP M Sbjct: 907 ETILLVDDEPALREIGAKMLARRGYHVTRAASGEEALEIFDADPSAIDLVILDVSMPGMG 966 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G R+ E DP +KV+ +G++ + A + ++KPF DL+ V ++L Sbjct: 967 GHACLRKLREADPQVKVIIASGYSRETQLKEIAAVGASGYVAKPFRAYDLLTLVRQVL 1024 >gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL ED++D+ + +++ L AGYEV +G A D ++L D ++P ++G+ Sbjct: 11 EKILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWMLPRLNGL 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR + V+ +T + A L+KPF +R+LV V LL Sbjct: 71 EVLRRLRQ-SSATPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALL 125 >gi|215433465|gb|ACJ66698.1| sigma-54 dependent DNA-binding response regulator [Myxococcus fulvus HW-1] Length = 454 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 49/86 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ +MR L K L + G+ V+ + A ++ E F ++LTD+ MP MD Sbjct: 1 MPGRVLVVEDEREMRAMLEKGLTRRGFTPVAMPSADEALVRLAAEDFDVVLTDLRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L R PD+ V+ +T F ++ Sbjct: 61 GLALCERIALNRPDIPVVVVTAFGSL 86 >gi|117168620|gb|ABK32284.1| Jer4 [Sorangium cellulosum] Length = 461 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D+ + L L K G++ + A A + + E F +++TD+ M M+ Sbjct: 1 MTGRVLIVDDERGVCELLDAGLKKRGFQAAWRTSAAEALELLGAEDFDVVVTDMTMRGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R + PDL V+ IT F ++ + ++KPF L L V R L Sbjct: 61 GLELCERIAQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERAL 118 >gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 964 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ ++ + L + G +V +G A V E F L+L DI MPEMDG E Sbjct: 695 RVLLVEDNPINQQVAQELLEQCGLQVSIAQDGVKAVAAVERERFDLILMDIQMPEMDGYE 754 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR +L P+ + I A A++ D++ A + L+KP ++ L + + + L Sbjct: 755 ATRRIRQL-PERARLPIIAMTAHAMSGDADRSLAAGMQGHLTKPIEIQPLYDMLGKWL 811 >gi|260063103|ref|YP_003196183.1| two-component system, transcriptional regulatory protein [Robiginitalea biformata HTCC2501] gi|88784672|gb|EAR15842.1| two-component system, transcriptional regulatory protein [Robiginitalea biformata HTCC2501] Length = 240 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L ++V NG ++K ++EPF + + D++MP DG Sbjct: 5 NKKILLVEDDPNFGIVLKDYLSMNDFDVTLAKNGMEGFEKFKKEPFDVCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITG 82 LA+ E + + ++F+T Sbjct: 65 FTLAKEIREKNDHIPIIFLTA 85 >gi|302876196|ref|YP_003844829.1| two component transcriptional regulator, LytTR family [Clostridium cellulovorans 743B] gi|307686927|ref|ZP_07629373.1| two component transcriptional regulator, LytTR family protein [Clostridium cellulovorans 743B] gi|302579053|gb|ADL53065.1| two component transcriptional regulator, LytTR family [Clostridium cellulovorans 743B] Length = 247 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG-YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 MN K+L+ +D+ MR + K L K+G +EV+ +NG A +E ++ DI MP Sbjct: 1 MNIKVLIVDDEQGMRTIIKKVLTKSGGFEVIGDTDNGEEAISIFKEHRPEVVFFDIEMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +GI+ A+ T++DP V+F T A D+ L KPF + ++ ++R+ Sbjct: 61 FNGIDCAKILTDIDPKTIVIFAT--AHQEYMSDAFQLYAFDYLIKPFKIERILQTLDRI 117 >gi|291285993|ref|YP_003502809.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] gi|290883153|gb|ADD66853.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] Length = 137 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++ EDD+ +R L++ L + + S +GA D E +++TDI MP MDG+E+ Sbjct: 17 VMHVEDDNSVRESLMRFLKRRFDTIYSAKDGAEGLDIYTEHKPDIVITDIQMPVMDGVEM 76 Query: 65 ARRATELDPDLKVMFITGF 83 +RR EL+P ++ T F Sbjct: 77 SRRIKELNPSALIIVTTAF 95 >gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED++ + RF+ L + V + +G + P+ LL+ D+++PE++G E Sbjct: 2 RILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLMLPEINGTE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR + + D+ ++ +T A++ + L+KPF +L+ + LL Sbjct: 62 LIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALL 116 >gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QKIL+ ED+ + R L L + GYE +GA Y + L++ DI++P M+ Sbjct: 1 MSQKILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIMLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVN 115 G E+ + + V+ +T A N + + K ++KPF + +L++ V+ Sbjct: 61 GFEVLSKLRQKGSKTPVIILT-----ARNAEEEVVQGLKFGADDYITKPFGVAELLSRVS 115 Query: 116 RLL 118 +L Sbjct: 116 AVL 118 >gi|322417615|ref|YP_004196838.1| response regulator receiver protein [Geobacter sp. M18] gi|320124002|gb|ADW11562.1| response regulator receiver protein [Geobacter sp. M18] Length = 325 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QK+L+ +DD M + + L G++ + +G A KVR E F +L D+ MP +DG Sbjct: 70 KQKVLVVDDDRRMVKTICDILRVKGHDPHTAYSGEEAVAKVRGEGFDCVLMDLKMPGIDG 129 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 +E R E P L V+ ++ +A +++ VL+KP ++ Sbjct: 130 VEALRMIKEAAPGLPVVLMSAYATELQTEEASRHGAFGVLTKPIDVQ 176 >gi|307708413|ref|ZP_07644879.1| response regulator [Streptococcus mitis NCTC 12261] gi|307615512|gb|EFN94719.1| response regulator [Streptococcus mitis NCTC 12261] Length = 245 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAVYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 QLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|226315391|ref|YP_002775287.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098341|dbj|BAH46783.1| probable two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 397 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 5/85 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKAL---GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVM 56 M+ K+++ +D+ +RR L KA+ + G EVV+ NG ++ + L++TDIVM Sbjct: 1 MSIKVMIVDDEVLVRRGL-KAMVPWSRYGMEVVADAPNGRKGWEAFLQIQPELVITDIVM 59 Query: 57 PEMDGIELARRATELDPDLKVMFIT 81 PEMDG+EL RR E P KV+ ++ Sbjct: 60 PEMDGLELCRRVKEHAPQTKVLLLS 84 >gi|84387185|ref|ZP_00990207.1| sensor histidine kinase/response regulator LuxN [Vibrio splendidus 12B01] gi|84378046|gb|EAP94907.1| sensor histidine kinase/response regulator LuxN [Vibrio splendidus 12B01] Length = 682 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 40/65 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +RRF L K G++VV +G A D + + L+L DI MP MDG+ Sbjct: 564 RTIMVVDDNESLRRFTAMLLEKQGFDVVQKEDGQQALDALDSDDIDLILMDIEMPIMDGV 623 Query: 63 ELARR 67 E +RR Sbjct: 624 EASRR 628 >gi|90426148|ref|YP_534518.1| response regulator receiver domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90108162|gb|ABD90199.1| response regulator receiver domain protein (CheY-like) [Rhodopseudomonas palustris BisB18] Length = 121 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D +R+ + AL G+ V+ +GA +K + L++TD+ MP M+G+EL Sbjct: 4 ILTVDDSPSIRQMIKVALAPLGHNVIEAGDGAQGLEKAKASRPHLVITDLNMPVMNGMEL 63 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A RAT L ++F+T + A+ ++ ++KPF L VN+L+ Sbjct: 64 IKALRATPALTGLPIVFLTTESNDAVKQEAKKAGATGWITKPFSQDQLQAVVNKLV 119 >gi|283853533|ref|ZP_06370773.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] gi|283571072|gb|EFC19092.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] Length = 456 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R L+ + GY+ ++G A RE+PF L+L D+ M +M GIE Sbjct: 9 VLIVDDDQGHRTILLALINGWGYKAAGADDGTKAVTLAREKPFDLILMDVRMADMGGIEA 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + +P + ++ +T ++ V ++ L+KP Sbjct: 69 LKEIKAYNPSIPILIMTAYSNVESAVEAIKAGAYDYLTKPL 109 >gi|255994745|ref|ZP_05427880.1| DNA-binding response regulator VncR [Eubacterium saphenum ATCC 49989] gi|255993458|gb|EEU03547.1| DNA-binding response regulator VncR [Eubacterium saphenum ATCC 49989] Length = 226 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 3/114 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ + R+ + + L AGY+V++ NG A D R+ +L++ DI+MPE+DGIE+ Sbjct: 13 ILVAEDEANTRKGIEQFLESAGYKVIAAKNGQEALDHFRDA--ALVILDIMMPELDGIEV 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +++ + V+ +T + + +SKPF L L + LL Sbjct: 71 LKNIRKVNK-VPVIMLTALSDEGTQLTTFNELADDYISKPFSLVILQKRIESLL 123 >gi|322420086|ref|YP_004199309.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] gi|320126473|gb|ADW14033.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] Length = 319 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ +R + + L G+ V +G A + R L++TDI M M GIE Sbjct: 2 ELLVVDDEETLRSVVSQVLSADGFTVSEAASGEEALEAFRASSHQLVITDIRMGGMSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R E +PD +V+ +T A++ + L KPF DL++ V Sbjct: 62 LLTRIKEHNPDTQVVIMTSHASLDSALTALRAGAYDYLVKPFESLDLISAV 112 >gi|298490278|ref|YP_003720455.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298232196|gb|ADI63332.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 374 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 10/123 (8%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD L++ L ++ GY++ ++GA+A KV + P L+L D++MP MDG E+ Sbjct: 12 ILAVDDTRDNLILVRTLLESEGYKIDLVSDGATALQKVAQSPPDLILLDVMMPGMDGYEV 71 Query: 65 ARRATELDPDLK---VMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RR PDL ++ IT F ++V D+ A + KPF +L+ V LL Sbjct: 72 TRRIRNC-PDLNYIPILLITAFHESSVVEGLDAGAD---DFIRKPFDTDELLARVRSLLR 127 Query: 120 IKN 122 +K+ Sbjct: 128 LKH 130 >gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] Length = 227 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++I + EDD+++R + AL GYEVV +N A + +++E SL + D+++P+M Sbjct: 1 MNERIFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLMLPKMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+ ++ E + +L ++ ++ + + ++KPF + +L V LL Sbjct: 61 GIDAIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLL 118 >gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 234 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 19/127 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ +R L+ AL K GY V + +G +A + L++ D+++PE+D Sbjct: 1 MSKHILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPELD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E+ R RA P ++F++ A + L D L+KPF R+LV Sbjct: 61 GLEVCRRLRAGSRTP---ILFLSARADEVDRIVGLELGGDDY-------LTKPFSPRELV 110 Query: 112 NEVNRLL 118 V LL Sbjct: 111 ARVRALL 117 >gi|153004709|ref|YP_001379034.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028282|gb|ABS26050.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 459 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 64/119 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ ++L+ +D+ +R + + L ++GYEV+S +G A + + P ++L D+ +P +D Sbjct: 4 LSSRVLVVDDEKLIRWSVAERLQRSGYEVISAESGEQALELIAANPPDVMLLDVKLPGID 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G++ +RA + DL V+ ++ + V + ++ L KPF + L V R + Sbjct: 64 GVQTLQRALAENADLIVLMMSAHSTVDVAVEAMKHGAVDFLVKPFPFQALDAAVERAIA 122 >gi|148263897|ref|YP_001230603.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397397|gb|ABQ26030.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 456 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 58/103 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ +R + + L + GY+V+S G A + V EE L+L D+ + +GI Sbjct: 2 EKILIIDDEAFIRENVERILNEEGYQVLSAEGGKKALELVSEEEVDLVLLDLNLGTENGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++ R E+DPD+ V+ ITGF +V DS + KPF Sbjct: 62 DVLRSLKEIDPDILVIIITGFGSVESAVDSLKMGAFHYMKKPF 104 >gi|23014385|ref|ZP_00054204.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1193 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ + + + + GY + NGA A+++++ + LLLTD MPEMDG EL Sbjct: 929 ILVAEDNPTNKVVIRHLMERLGYAIEVVGNGAEAWERMQIRDYGLLLTDCHMPEMDGYEL 988 Query: 65 ARRATELDPD----LKVMFIT-----GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +R E + + L ++ +T G A L+ NA L+KP L L + Sbjct: 989 TQRIREWEVETGHLLPIVALTADALAGTARRCLDCGMNA-----FLAKPIDLIQLDATIR 1043 Query: 116 RLLTI 120 RLL + Sbjct: 1044 RLLPV 1048 >gi|320353805|ref|YP_004195144.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320122307|gb|ADW17853.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 121 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I+ A+D +R+ + L + GYEVV +G A K+ + +LLTD+ MP++D Sbjct: 1 MAKLIMTADDSASIRQMVAFTLKQNGYEVVEAVDGQDALSKLTTKKVDMLLTDLNMPKLD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI L + RA L+ + ++ +T + + A + KPF LV V ++L Sbjct: 61 GIGLIKGVRAGGLNKFIPIVMLTTESQDGKKAEGKAAGATGWIVKPFKPEQLVAVVKKVL 120 >gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 228 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D + L L GY+V ++G A P L+++D++MP MDG Sbjct: 2 QKILVVDDELDCQAVLAIYLESRGYQVECASSGLEALSIFESNPPDLVISDVMMPHMDGF 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E R R++ L + +F++G + + ++ L KPF ++++ +V Sbjct: 62 EFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGGDDYLVKPFQPKEILAKVK 116 >gi|255535917|ref|YP_003096288.1| Phosphate regulon transcriptional regulatory protein phoB [Flavobacteriaceae bacterium 3519-10] gi|255342113|gb|ACU08226.1| Phosphate regulon transcriptional regulatory protein phoB [Flavobacteriaceae bacterium 3519-10] Length = 227 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KILL +D+ D+ L L K GYEV + NG K +E L+L D++MPE DG Sbjct: 5 QKKILLIDDEQDILEILSYNLQKEGYEVHTAQNGNEGIQKAKEIVPDLILLDVMMPEKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAA 85 IE + +L PDL+ I +A Sbjct: 65 IETCQDLRKL-PDLQKTLIVFLSA 87 >gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 242 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + +G SA R+ L++ D+++P+MDG Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGFS 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E + V+F+T A ++KPF L ++V + +L Sbjct: 71 VTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAIL 125 >gi|222102367|ref|YP_002546508.1| two component response regulator [Agrobacterium vitis S4] gi|221739611|gb|ACM40313.1| two component response regulator [Agrobacterium vitis S4] Length = 225 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD R++L+K L AG+ + +G + + +L+ D ++P +DG+ Sbjct: 2 KILVIEDDQTTRKYLVKGLSSAGHSIDCIGDGREGLSAGLDTRYDILIVDRMIPGLDGLN 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + V+F+T + V + L KPF +LV +N L+ Sbjct: 62 LVKSLRAASVRTPVLFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALV 116 >gi|150003546|ref|YP_001298290.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931970|gb|ABR38668.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1378 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED D+R +L + L A Y ++ NG R+E L++TD++MP M+G E Sbjct: 1118 KLLVVEDHADIRLYL-RVLFSATYNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 1176 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E DLK I AL D N K ++ + KPF+ L +V RL+ Sbjct: 1177 CCRILKE---DLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1233 >gi|197118968|ref|YP_002139395.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088328|gb|ACH39599.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 457 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ MR FL L GY V N A + E+ + ++++D++MP + Sbjct: 1 MRARILVVDDELSMREFLSILLEGEGYLVDQAENAEDALRCMGEQRYEMVISDVLMPGLG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIEL R P+ V+ IT F ++ + KPF + ++ Sbjct: 61 GIELLSRIKSESPETAVLMITAFTTAEQAVEAMKLGAYDYIGKPFKVEEV 110 >gi|29345776|ref|NP_809279.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337669|gb|AAO75473.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1420 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ + Y V+ NG A + P +++D++MP MDGIEL Sbjct: 1169 ILVVEDNADMRGY-IRSILREQYHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIEL 1227 Query: 65 ARRATE 70 +RR E Sbjct: 1228 SRRVKE 1233 >gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 227 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD +R+ L L + GY V+ +NG A K ++E ++ DI+MPE+DG Sbjct: 2 KILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIMMPELDGYS 61 Query: 64 LARRATELDPDLKVMFITG 82 + + + D V+F++ Sbjct: 62 VCKEIRKHDEQTPVIFLSA 80 >gi|242309430|ref|ZP_04808585.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] gi|239524001|gb|EEQ63867.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] Length = 222 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 KIL+ EDD DM++ L+ L K+G E V+ ++ A + ++ ++ F L + DI++PEMDG+ Sbjct: 3 KILIVEDDLDMQKLLVDYLKKSGMEAVATDSPKEALEMLKSKQNFHLAVLDIMLPEMDGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ E+ DL ++ + + L+K + +LV +N LL Sbjct: 63 ELCKKMREI-SDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALL 117 >gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ ++ +K L GY V C+NG A + + P+ L + DI+MP DG+ Sbjct: 2 RILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIMMPGRDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R L V+ +T AV L+KPF +L+ + LL Sbjct: 62 ILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLL 116 >gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065] Length = 227 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KILL E ++ M F+ L GY+V +G A +KV + L+L DI++P ++G Sbjct: 3 NFKILLVEYEEQMSMFIEMELTHEGYKVDIVYDGREALEKVENTEYQLILLDIMIPGLNG 62 Query: 62 IELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 IE+ RR + +M T G + L D A L+KPF + +L+ + Sbjct: 63 IEVCRRIRQFSCVPIIMLTTKSGVSDKVLGLDVGAN---DYLTKPFAIEELLARI 114 >gi|300867146|ref|ZP_07111811.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300334847|emb|CBN56977.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 461 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + +AL AGY+V +G A +V P L+L D++MP +DG E Sbjct: 45 ILIVDDTPTNLDVISEALSNAGYKVAFATSGERALQQVERRPPDLILLDVMMPGIDGFET 104 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 +R A E D+ VMF+T A V N K K+ ++KPF ++++ V Sbjct: 105 CKRLKANEKTCDIPVMFMTALADV-----DNKVKGLKLGAVDYVTKPFQEQEVLARVKTH 159 Query: 118 LTIK 121 L ++ Sbjct: 160 LQLR 163 >gi|295111382|emb|CBL28132.1| response regulator receiver protein [Synergistetes bacterium SGP1] Length = 120 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS----CNNGASAYDKVREEPFSLLLTDIVM 56 M +K+L+ +D MR L L K +EVV+ G +AY K + + ++ DI M Sbjct: 1 MGKKVLIVDDAAFMRMMLKDILQKNNFEVVAEAENGKAGVAAYQKYKPD---IVTMDITM 57 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 PEM+GI+ + LDPD+K++ ++ + ++ + KPF ++ + + Sbjct: 58 PEMNGIDAVKAIKALDPDVKIVMVSAMGQQPMVIEAIQAGANDFIVKPFQPERVIEAITK 117 Query: 117 LLT 119 +L+ Sbjct: 118 VLS 120 >gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1027 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 7/127 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ +IL+AEDD + L K+GY V + NG A ++ EE F L+L D+ MP MD Sbjct: 898 VSSRILVAEDDTISLITAKRMLEKSGYSVSAAKNGQEALQRLTEESFDLILMDVQMPIMD 957 Query: 61 GIELA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E R A+ L V I A A+ D A + +SKP L + Sbjct: 958 GVEATKAIRGASNLGAKSSVP-IVAMTAYAMTGDKETFLAAGMDDYISKPVDKAALAEVI 1016 Query: 115 NRLLTIK 121 R+L++K Sbjct: 1017 ERVLSLK 1023 >gi|224368990|ref|YP_002603154.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223691707|gb|ACN14990.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 701 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 ILL +D+ +R L KAGY+V S +NG + R +E F L+L DI MPEMDG Sbjct: 581 ILLVDDNPVNQRMATIMLSKAGYKVTSADNGRQTLELCRSSKERFDLILMDIFMPEMDGF 640 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 E R RA E D ++V I F A L A + L+KPF D+ V + Sbjct: 641 ETTRQIRALEGDSGVRVP-IVAFTANVLPLFKERCLVAGMDDFLTKPFRREDIFAAVKKW 699 Query: 118 L 118 + Sbjct: 700 V 700 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ E D+++R+ L++ALG GY+ + A + L++ DI +P+MDG+ Sbjct: 35 KGILVVEHDNELRQGLVEALGSGGYDCCGAPSVRGARTLLWSGGIDLVICDIALPDMDGL 94 Query: 63 ELARRATELDPDLKVMFIT 81 + PDL + +T Sbjct: 95 RFMVSVKDELPDLDFIIMT 113 >gi|220926020|ref|YP_002501322.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950627|gb|ACL61019.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 999 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +G + ++ + LL+TD+ +P M+ Sbjct: 878 ETVLIVDDEPSVRMLVTEVLEDLGYTAIEAADGPAGLKVLQSDVRVDLLVTDVGLPGGMN 937 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A E+ P LKV+FITG+A A + +VL+KPF + L + ++ Sbjct: 938 GRQVADAGREVRPGLKVLFITGYAENAAIGNGYLEPGMQVLTKPFVMEALAGRIREMI 995 >gi|158520066|ref|YP_001527936.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158508892|gb|ABW65859.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 226 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 9/118 (7%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ +D + L I+ K +E++ N+G A ++E P L++TD+VMP++DG Sbjct: 3 KVLIVDDSQQLLDLLRRIQNKYKDEFEMILVNSGTKAMAVLKEMPIDLVVTDLVMPQVDG 62 Query: 62 IELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + L + PD+ + +TG+A V + PD+ ++L KPF +++L+ + + Sbjct: 63 LTLLTHINDRYPDVLCIAMTGYATENVVRMLPDN----LLQLLKKPFDIQNLITVIRK 116 >gi|160878354|ref|YP_001557322.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427020|gb|ABX40583.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 226 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ D+ + + L GY V +C +G AY+ + E + L++ D+ +P MDGI+ Sbjct: 2 RILIVEDEIDLCDTIAEGLQIDGYAVDTCYHGDVAYELISTETYDLVVLDLNLPGMDGID 61 Query: 64 LARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D+K++ ++ ++V+ L D A L+KPF +L + LL Sbjct: 62 ILSDLRKTNKDMKILILSARSSVSDKVLGLDIGAN---DYLAKPFAFEELEARIRSLL 116 >gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 247 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G++V + +GASA RE ++ D+++P++DG+E Sbjct: 21 RVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGLE 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR PD+ V+F+T AV ++KPF L +LV + LL Sbjct: 81 VLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLL 135 >gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 988 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 43/79 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+D + + L G V +NG A D R + ++L DI MPE+DGIE Sbjct: 873 RVLLAEDNDINQIVATEILKMKGIAVDVASNGLEAVDMARSGAYDVILMDIQMPELDGIE 932 Query: 64 LARRATELDPDLKVMFITG 82 RR PD+ ++ +T Sbjct: 933 ATRRIRAFLPDIPIIAMTA 951 >gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 232 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 10 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 69 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 70 VARRLRGEGHAIPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 124 >gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] Length = 252 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV++ +GASA+ E L++ D+++P+MDG Sbjct: 29 RLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPDMDGFT 88 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T + ++KPF L ++V + +L Sbjct: 89 VTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAIL 143 >gi|215433427|gb|ACJ66679.1| Nla24 [Myxococcus fulvus HW-1] Length = 451 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +DD + FL ++L GYE V + A EPF L++TD+ MP M G Sbjct: 5 RKRLLILDDDAGVVDFLRESLDARGYEAVGRTSPEEALALFEREPFDLVITDVEMPRMRG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ P V+ IT F V L + ++KPF++ LV + R Sbjct: 65 TEVLEALLTRKPGQLVVLITAFGGVELAVAAVKAGACDFVTKPFNIDALVLTLER 119 >gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] Length = 251 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ +R L + L + Y V S G E P+ + + DI +PEMDGIE Sbjct: 2 RLLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGLPEMDGIE 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + D V+ +T + + ++ A L+KPFH +L+ +N L Sbjct: 62 LIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGAD---DYLAKPFHNEELLARLNAL 115 >gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1401 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+DD R +L L K + ++ +NG + K ++++DI MPEM GIEL Sbjct: 1141 VLLVEDNDDFRFYLKDNL-KEVFFLIEASNGREGWQKALAMHPDIIVSDISMPEMTGIEL 1199 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLLT 119 ++ L D + I AL +++ K ++ ++KPF+ L++++ +LT Sbjct: 1200 CKK---LKSDKRTSHIPVVLLTALTGEADQIKGLEIGANDYMTKPFNFEILLSKIKNILT 1256 Query: 120 IKN 122 +++ Sbjct: 1257 LRD 1259 >gi|315498235|ref|YP_004087039.1| pas/pac sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] gi|315416247|gb|ADU12888.1| PAS/PAC sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] Length = 596 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 10/126 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EM 59 +++LL ED+ ++R L GYEVV+ N + A D + + LL TDIVMP +M Sbjct: 472 GERVLLVEDNREVRELACAILEADGYEVVARENASLALDYLNGPDGVDLLFTDIVMPGKM 531 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNR 116 +G LA+ A + DL ++ TGFA D + NA+ + KP+ +L V Sbjct: 532 NGAALAKEARQRFSDLPILITTGFA-----DDVHGHTNAREFETIYKPYMPDELSTRVRG 586 Query: 117 LLTIKN 122 +L K+ Sbjct: 587 VLNRKD 592 >gi|156742948|ref|YP_001433077.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234276|gb|ABU59059.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1234 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 46/81 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +LL EDDD +R +AL + G V + + G A + ++L++TD+ MP +DG Sbjct: 1117 NLSVLLVEDDDLVRAMAQRALERLGCRVDAVSRGEEALARALAWNYALVITDLQMPGLDG 1176 Query: 62 IELARRATELDPDLKVMFITG 82 +EL R L P L+ + +TG Sbjct: 1177 VELYERLRVLKPSLRWLILTG 1197 >gi|56460310|ref|YP_155591.1| flagellar biosynthesis protein [Idiomarina loihiensis L2TR] gi|56179320|gb|AAV82042.1| Flagellar biosynthesis protein [Idiomarina loihiensis L2TR] Length = 453 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++L+ EDD +R +I L A + + NG A +++E +L+++D+ MP +D Sbjct: 2 VERQVLVVEDDVSLREAIIDTLELADCQCLEAANGEEALLILKKESVALVISDVQMPGID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R D+ V+ +T FA V + L+KPF + L V R L Sbjct: 62 GLQLLRSMNNQQYDIPVIMMTAFAKVDDAVVAMREGAVDYLTKPFSIEKLQTLVQRYL 119 >gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1274 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ + L GY ++ NG A + L+L DI MP +DG+E Sbjct: 1154 ILLAEDNEANIKTFSSYLSAKGYGILLATNGEQALELATIHQPDLILMDIQMPGIDGLE- 1212 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A R LDP+L + I A+A+ D + A L+KP L+ L + +LL Sbjct: 1213 AIRQIRLDPELVNIPIVALTALAMTGDRDRCLQAGANDYLTKPVKLKQLATTIQQLL 1269 >gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1306 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ K L K GY NG D + + + ++L D+ MPE+DG+E Sbjct: 1051 RILLAEDNVVNQKVATKTLAKLGYRADVAANGLEVLDALARQRYDVVLMDVQMPELDGLE 1110 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNR 116 +RR ++ I A A+ D + A +SKP + +LV ++R Sbjct: 1111 ASRRIRNEIATVRQPRIIAMTANAMQSDRDLCIAAGMDDYISKPVRIEELVAALSR 1166 >gi|157371505|ref|YP_001479494.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Serratia proteamaculans 568] gi|157323269|gb|ABV42366.1| integral membrane sensor hybrid histidine kinase [Serratia proteamaculans 568] Length = 957 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 49/106 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D RR L LG GY+VV+ N+G A D + ++LTD+ MP MDG L Sbjct: 831 LLVVDDHPINRRLLSDQLGSLGYQVVTANDGVDALDVLNRNTVDIVLTDVNMPNMDGYRL 890 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R +L V+ +T A LSKP L L Sbjct: 891 TQRLRQLHFTAPVIGVTANALAEEKQRCIEAGMDNCLSKPVTLETL 936 >gi|121601666|ref|YP_989580.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis KC583] gi|12830428|emb|CAC29081.1| putative regulatory protein [Bartonella bacilliformis] gi|120613843|gb|ABM44444.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis KC583] Length = 240 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S NG SA + P L + DI MP MD Sbjct: 7 VTQTIVLVDDDRNILTSLSFALETEGYRVESYTNGVSALKSLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + D+ V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDIPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLL 118 V +L Sbjct: 119 VKAIL 123 >gi|229591044|ref|YP_002873163.1| putative sensor kinase/response regulator fusion protein [Pseudomonas fluorescens SBW25] gi|229362910|emb|CAY49820.1| putative sensor kinase/response regulator fusion protein [Pseudomonas fluorescens SBW25] Length = 570 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMP-E 58 ++ IL+ ED++D+R +++ L ++GY V++ +G A ++ +P L+ TD+VMP Sbjct: 445 HETILVVEDNEDVRATVVELLEQSGYTVLTAEDGDRAMHMLQAGVQP-ELIFTDVVMPGR 503 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +LA A P + V+F +G L+ + + +LSKP+ L + +L Sbjct: 504 IKSTDLAAWARAQTPPVAVLFTSGHTRDILSSNHLLSPDIHLLSKPYSPEALAQRIRSVL 563 Query: 119 TIK 121 +++ Sbjct: 564 SVR 566 >gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 806 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD R + K L K+G+ V + NG+ A + F + DI MP MDG++ Sbjct: 686 RILLVEDDPANRFAMQKLLQKSGHHVQTAQNGSQAVEAFAHSHFDCIFMDIHMPVMDGVQ 745 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVN 115 R+ + P + ++ +T + LN D + + L KP ++D+ N + Sbjct: 746 ATRKIRSMQDSGIAPKVPIIALTAY---TLNGDREKFLESGMDEYLGKPVQMQDIENVLK 802 Query: 116 RLL 118 +LL Sbjct: 803 KLL 805 >gi|193213573|ref|YP_001999526.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193087050|gb|ACF12326.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 592 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 9/127 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N IL +D+ + + + K GY + + + A + RE P + L++TD+ MPEM Sbjct: 464 NANILFVDDEPAAVQMMTIMMQKLGYTIHAEKSPIEALRRFRENPEQYDLIITDLTMPEM 523 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN----AKVLSKPFHLRDLVNEVN 115 G +LA + +L P ++ +TG+ + P N ++L KP L L + V+ Sbjct: 524 TGTQLAEKLHKLMPSTPIILMTGYGKLI---GHETPLNHYGINRLLKKPVKLHQLASTVH 580 Query: 116 RLLTIKN 122 +L N Sbjct: 581 EVLNETN 587 >gi|147677013|ref|YP_001211228.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146273110|dbj|BAF58859.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 545 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 3/114 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++D+ + + L K GYEV NG A +RE P + L D+ +P+ DG L Sbjct: 6 VLIVDDEEDIGTLVSRLLKKKGYEVKIALNGMEAEGFIRETPVDVALVDLNLPDTDGFTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ +++P +V+ +TG + L KPF RD ++EV ++ Sbjct: 66 LRKIKKVNPRCEVILMTGNGTPGTAEKAVRSGAFNYLGKPF--RD-ISEVETMV 116 >gi|323977582|gb|EGB72668.1| sigma-54 interaction domain-containing protein [Escherichia coli TW10509] Length = 461 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + ++ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPIILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|319936553|ref|ZP_08010967.1| response regulator receiver modulated metal dependent phosphohydrolase [Coprobacillus sp. 29_1] gi|319808351|gb|EFW04911.1| response regulator receiver modulated metal dependent phosphohydrolase [Coprobacillus sp. 29_1] Length = 529 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 22/118 (18%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPE 58 M+++ +L DD +M R L+ + K Y++V NNGA A + ++ FSLLL DI MPE Sbjct: 1 MDKQKILIVDDSEMNRDLLVEILKNQYDIVEANNGAEAITILSQQRKDFSLLLLDIFMPE 60 Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAK---------VLSKPF 105 MDG E+ + D +L V+ I+ N+P N K +S+PF Sbjct: 61 MDGFEVLTYINKYHWDDNLAVIMISA---------DNSPSNIKRAYDLGAFDYISRPF 109 >gi|312602513|ref|YP_004022358.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI 454] gi|312169827|emb|CBW76839.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454] Length = 891 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 N+ +L+ EDD D+R + + + GY+V++ + G A + ++ LL TD+VMP ++ Sbjct: 598 NETVLIVEDDADVRLTAVDMIAQLGYQVLTASTGDEAKAILLDDARIDLLFTDVVMPGDV 657 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR A + P + V+F +G+ + +L+KP+ +L +++ L Sbjct: 658 KSPELARLAAQRVPPVPVVFTSGYTRDEIFHHGRLDPGVTLLAKPYRRDELAHKLRSAL 716 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 4/111 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD R + + G + + A + + + +LL+D+ +P M G +L Sbjct: 777 VLLVEDDAPSREAMRDLIEVMGLRCCAAGSAEEALTRAAAQRYDVLLSDLTLPGMAGDQL 836 Query: 65 ARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A P + V ++G+ A ++P N + VL KP + L ++ Sbjct: 837 ALALRRTQPHVHVFLMSGYGQCADVDPLLN---DVPVLQKPLDVVALGRQI 884 >gi|256112415|ref|ZP_05453336.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 3 str. Ether] gi|265993852|ref|ZP_06106409.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether] gi|262764833|gb|EEZ10754.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether] Length = 239 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 67 MELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLVERV 118 Query: 115 NRLL 118 +L Sbjct: 119 KAVL 122 >gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 222 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDDD +R+ + L K G+E++ +G SA +K + L++ D+++P+++GI Sbjct: 3 KILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKFKNNNIDLIVLDLMLPKLNGIT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + E+ D+ ++ +T + ++KPF + LV ++ +L Sbjct: 63 VCSKIREI-SDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVL 116 >gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] Length = 228 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI EDD + L L + GYEV++ + +++E F L+L D+ +P+ G E Sbjct: 3 KICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSGYE 62 Query: 64 LARRATELDPDLK---VMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + +R E D LK V+F+T + + D A ++KPF +R+L++ +N + Sbjct: 63 ICKRMRE-DSRLKEIPVIFLTACDDEVNIVMGLDLGAD---DYITKPFRVRELISRMNSV 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|218778949|ref|YP_002430267.1| response regulator receiver sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760333|gb|ACL02799.1| response regulator receiver sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 595 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL+ +D+ + L + GYEV S + A E P + ++TD MP++ Sbjct: 465 DKHILVVDDEKPIILMEEATLVQWGYEVTSTTDSQEALRLFMENPHTYDAVVTDQTMPKL 524 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI+LAR ++ PDL ++ +TG++A + A L KP L V++ ++ Sbjct: 525 TGIDLAREMLKVRPDLPIILVTGYSAAVTRQKAPDLGLAAYLEKPVETMVLAQAVDQAIS 584 Query: 120 IKN 122 +N Sbjct: 585 SRN 587 >gi|206603158|gb|EDZ39638.1| Putative two component, sigma54 specific, transcriptional regulator, Fis family [Leptospirillum sp. Group II '5-way CG'] Length = 489 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ +M L ++L + G+ V NG A ++ R+E P+ +++D+ MPE+DG Sbjct: 8 VLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALNRFRQEGPYQWVISDLRMPEVDGWS 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L ++ P +V+ +T F V D+ + KPF +L Sbjct: 68 LLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEEL 114 >gi|169831989|ref|YP_001717971.1| response regulator receiver modulated diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C] gi|169638833|gb|ACA60339.1| response regulator receiver modulated diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C] Length = 314 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D R + KAL + G+ ++ +GA A++ ++ E L++ D +MP MDG+E Sbjct: 2 RILVADDSLVSARVVQKALEEWGHSIIVARDGAEAWEILQREEIRLVIADWIMPVMDGLE 61 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L R R ++L + V+ +T + + ++KPFH +L V Sbjct: 62 LCRTIRHSQLAGYVYVILLTSKGSKDDIVEGLGAGADDYITKPFHHEELKARVQ 115 >gi|169633326|ref|YP_001707062.1| two-component regulatory system response regulator [Acinetobacter baumannii SDF] gi|169152118|emb|CAP01017.1| response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) [Acinetobacter baumannii] Length = 497 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V + +A +++ + ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLSKVKNSHPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|146280662|ref|YP_001170815.1| hypothetical protein PST_0267 [Pseudomonas stutzeri A1501] gi|145568867|gb|ABP77973.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 1584 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +L+ ED+ +R +++ L + GY+V+ + SA + ++ LL++D +P ++G + Sbjct: 1466 VLVVEDEAAVRMLVVEVLQELGYQVLEACDATSALPYLHGDQRLDLLVSDFGLPGLNGRQ 1525 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A + P+LKV+FITG+ + +L+KPF + L + L+ Sbjct: 1526 LVESARQHRPELKVLFITGYVPDEEMRNDFIGPGMDILAKPFSIDILAARIRSLI 1580 >gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 239 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LL +D++ + R L L K GY+ +G SA E F +L DI++P++D Sbjct: 1 MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ A+ L D L+KPF R+L+ Sbjct: 61 GIEVCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADD-------YLTKPFSPRELIAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|312135907|ref|YP_004003245.1| response regulator receiver protein [Caldicellulosiruptor owensensis OL] gi|311775958|gb|ADQ05445.1| response regulator receiver protein [Caldicellulosiruptor owensensis OL] Length = 121 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++I++ +D + + L K + K G+EV C NG A +K E L+ D+ MP ++G Sbjct: 2 KRIMIVDDSPMIHKLLKKEIEKLGHEVCYCATNGQEAVEKYFELKPDLIFMDVTMPVLEG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + E D KV+F+T L S+ ++ KPF D+ N +N Sbjct: 62 DAAYNKICEKDKSCKVVFLTAIGDKELLNLSDTSNVVTIIKKPFKGEDIQNAIN 115 >gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 224 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL ED++ + R + L GYEV +G S ++ + L+L DI++P++ Sbjct: 1 MAEKILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVN 115 G+E+ RR + DL V+ +T +V ++ S A ++KPF + +L+ + Sbjct: 61 GMEVLRRLRR-ESDLPVIMLTARDSV-IDKVSGLDSGADDYITKPFAIEELLARIR 114 >gi|163850668|ref|YP_001638711.1| response regulator receiver [Methylobacterium extorquens PA1] gi|188580441|ref|YP_001923886.1| transcriptional regulator [Methylobacterium populi BJ001] gi|218529393|ref|YP_002420209.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137722|ref|YP_002962194.1| Two-component response regulator ChvI [Methylobacterium extorquens AM1] gi|254560295|ref|YP_003067390.1| Two-component response regulator ChvI [Methylobacterium extorquens DM4] gi|163662273|gb|ABY29640.1| response regulator receiver [Methylobacterium extorquens PA1] gi|179343939|gb|ACB79351.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] gi|218521696|gb|ACK82281.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240007691|gb|ACS38917.1| Two-component response regulator ChvI [Methylobacterium extorquens AM1] gi|254267573|emb|CAX23415.1| Two-component response regulator ChvI [Methylobacterium extorquens DM4] Length = 237 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY + + +GASA D +R P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALETEGYRIQTYTDGASALDGLRHSPPDLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIHKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|138894753|ref|YP_001125206.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196247625|ref|ZP_03146327.1| response regulator receiver protein [Geobacillus sp. G11MC16] gi|134266266|gb|ABO66461.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196212409|gb|EDY07166.1| response regulator receiver protein [Geobacillus sp. G11MC16] Length = 119 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MR + L K G+EVV+ +G A +K +E ++ DI MPEMDGI Sbjct: 3 RILVVDDAAFMRMMIKDILTKNGHEVVAEAADGRQAIEKYKETRPDIVTMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++D + KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 63 TALKEIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFVVKPFQADRVIEAINKTL 118 >gi|116327158|ref|YP_796878.1| receiver component of a response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332185|ref|YP_801903.1| receiver component of a response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119902|gb|ABJ77945.1| Receiver component of a response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125874|gb|ABJ77145.1| Receiver component of a response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 225 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 9/121 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD++ LI+ L + ++V +G +A ++R+ + L+LTD MP+ DGI+L Sbjct: 9 ILLAEDDENNAELLIRYLERYNFDVDHVIDGVAAEIRLRKTRYDLILTDNRMPKFDGIDL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS--NAPKNAKVLS---KPFHLRDLVNEVNRLLT 119 R E++ ++F+T V+ ++ A N K+++ KP +R L+ ++ + L Sbjct: 69 LERIPEMNEATPIIFLT----VSNEKETIIQAAHNKKLVAYLLKPIDMRVLIEKICQALK 124 Query: 120 I 120 I Sbjct: 125 I 125 >gi|91203945|emb|CAJ71598.1| similar to response regulator protein [Candidatus Kuenenia stuttgartiensis] Length = 137 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+AED+ +R + K L GY+V+S +G A +K +LL D++MP M+ Sbjct: 18 EAILVAEDEYAVREIMEKLLENKGYKVISAVDGEDAVNKFEGHKGCIDMLLFDVMMPGMN 77 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G R ++ PD+K +F+ G++ L L KP L ++V+ +L+ Sbjct: 78 GRNAYDRIKKIKPDIKTLFMGGYSENILTNKDLQDGRVYFLQKPIIPDKLFHKVSEILS 136 >gi|86157034|ref|YP_463819.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773545|gb|ABC80382.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 123 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KILL +D + L K+ Y+VV+ +G +K REE L+L D+VMP MDG Sbjct: 3 RKKILLVDDSSTVLLMERMILAKSAYDVVTARDGQEGVEKAREEKPDLILMDVVMPRMDG 62 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R R E + V+ +T +A A ++KP + +L+ +V L Sbjct: 63 FEACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRSCL 121 >gi|34556800|ref|NP_906615.1| signal-transduction regulatory protein [Wolinella succinogenes DSM 1740] gi|34482515|emb|CAE09515.1| SIGNAL-TRANSDUCTION REGULATORY PROTEIN [Wolinella succinogenes] Length = 437 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI + EDD +MR+ L ALG+ +E++S + A K+ +E L++TDI MP MDGI Sbjct: 2 KIAIVEDDINMRKSLEIALGEYPEFEILSFKSAKDALKKL-DETIDLIVTDINMPGMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E R L+ + + ITG A + +S L+KPF + LV + R Sbjct: 61 EFLER---LEGRYEAIIITGNATLNKAIESIRLGVKDFLTKPFEIETLVRAIRR 111 >gi|116753388|ref|YP_842506.1| response regulator receiver protein [Methanosaeta thermophila PT] gi|116664839|gb|ABK13866.1| response regulator receiver protein [Methanosaeta thermophila PT] Length = 119 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D + R L +L G+E+ +G A R+ ++L DI+MP M+GI Sbjct: 2 KVLVVDDAPFILRALRDSLEARGFEIHEAQSGEEALSAYRDIRPDVVLMDILMPGMNGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R +DP ++ IT L + + KPF +RDL++ ++ L Sbjct: 62 VTREIMNIDPSANIIVITAIGKPGLEKECMDAGAKGFILKPFRMRDLLDLIDSL 115 >gi|134299175|ref|YP_001112671.1| two component sigma-54 specific Fis family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051875|gb|ABO49846.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum reducens MI-1] Length = 455 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++L+ +D++ +R+FL L + Y+V + NG DK+ + +L+TDI MPE D Sbjct: 2 VKKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G L + ++ V+ +T F + + + KPF L + ++ + R Sbjct: 62 GFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQR 117 >gi|326800736|ref|YP_004318555.1| two component, sigma54 specific, transcriptional regulator [Sphingobacterium sp. 21] gi|326551500|gb|ADZ79885.1| putative two component, sigma54 specific, transcriptional regulator [Sphingobacterium sp. 21] Length = 478 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L + L Y+V +NG + ++ + +L+L DI M MDG+E Sbjct: 3 KILIIDDERAIRSTLREILEYEDYQVTDVDNGLDGLEIIKRDNINLVLCDIKMGRMDGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + A + PDL + I+G V +++ +SKP L L L+T++N Sbjct: 63 VLTEAQSIKPDLPFIMISGHGTVETAVEASKKGAYDFISKPPDLNRL------LITVRN 115 >gi|313500283|gb|ADR61649.1| CheA signal transduction histidine kinase [Pseudomonas putida BIRD-1] Length = 765 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++IL+ +D +R K LG GY+V +G ++ +R E F LL+TDI MP MD Sbjct: 640 VRKRILVVDDSLTVRELQRKLLGNRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMD 699 Query: 61 GIE---LARRATELDPDLKVMFIT 81 GIE L RR L L VM ++ Sbjct: 700 GIELVTLVRRDQRLQ-SLPVMVVS 722 >gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 676 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + +IK L KAG EV+ NG A D ++ F +L D+ MP MDG+E Sbjct: 551 RILLAEDDPSNQFAMIKLLEKAGNEVMLAENGKQAIDLLKIHDFDCILMDVQMPLMDGLE 610 Query: 64 LA---RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R + +L P D+ ++ +T +A + + KP + DL ++R+ Sbjct: 611 ATKTIRSSADLGPKKDIPIIAMTAYAMRGDRETFLKWGMSDYVGKPVRMDDLAVALDRV 669 >gi|225022854|ref|ZP_03712046.1| hypothetical protein CORMATOL_02900 [Corynebacterium matruchotii ATCC 33806] gi|305682198|ref|ZP_07405002.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|224944378|gb|EEG25587.1| hypothetical protein CORMATOL_02900 [Corynebacterium matruchotii ATCC 33806] gi|305658671|gb|EFM48174.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 222 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 54/111 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD+ + F+ + L AGY +NG A+ R + L++ D+ +P MDG + Sbjct: 3 RILIAEDDNGIAEFIARGLESAGYSCDVTDNGPVAFGMARSGAYQLMILDLGLPNMDGTD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + + L L ++ +T A+ + + KPF +L+ V Sbjct: 63 ILEQLRSLGTTLPIIVLTARTALEDRLRTLEGGANDYMPKPFQFAELLARV 113 >gi|193077570|gb|ABO12405.2| response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 497 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V + +A +++ + ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLSKVKNSHPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|169795678|ref|YP_001713471.1| two-component regulatory system response regulator [Acinetobacter baumannii AYE] gi|184158421|ref|YP_001846760.1| response regulator [Acinetobacter baumannii ACICU] gi|239501618|ref|ZP_04660928.1| response regulator [Acinetobacter baumannii AB900] gi|260554740|ref|ZP_05826961.1| nitrogen regulation protein NR(I) [Acinetobacter baumannii ATCC 19606] gi|301346286|ref|ZP_07227027.1| response regulator [Acinetobacter baumannii AB056] gi|301512087|ref|ZP_07237324.1| response regulator [Acinetobacter baumannii AB058] gi|301595687|ref|ZP_07240695.1| response regulator [Acinetobacter baumannii AB059] gi|332852496|ref|ZP_08434235.1| nitrogen regulation protein [Acinetobacter baumannii 6013150] gi|332871301|ref|ZP_08439850.1| nitrogen regulation protein [Acinetobacter baumannii 6013113] gi|332873913|ref|ZP_08441853.1| nitrogen regulation protein [Acinetobacter baumannii 6014059] gi|169148605|emb|CAM86471.1| response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) [Acinetobacter baumannii AYE] gi|183210015|gb|ACC57413.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domain [Acinetobacter baumannii ACICU] gi|260411282|gb|EEX04579.1| nitrogen regulation protein NR(I) [Acinetobacter baumannii ATCC 19606] gi|332729198|gb|EGJ60541.1| nitrogen regulation protein [Acinetobacter baumannii 6013150] gi|332731585|gb|EGJ62871.1| nitrogen regulation protein [Acinetobacter baumannii 6013113] gi|332737899|gb|EGJ68786.1| nitrogen regulation protein [Acinetobacter baumannii 6014059] Length = 497 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V + +A +++ + ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLSKVKNSHPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|188579426|ref|YP_001922871.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342924|gb|ACB78336.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 764 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +L+ ED+ D+ RF + L + V +N +A ++ PF + +D+VMP + G+ Sbjct: 648 VLVVEDNLDVGRFCTQLLEDLDHATVWAHNAEAALAEMERVPFRFDAVFSDVVMPGIGGV 707 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ELARR + P L V+ TG++ V D++ +++ KP+ + + R+ Sbjct: 708 ELARRLRKDHPRLPVVLTTGYSDVLARDDAHG---FELVRKPYSAEQVARALQRV 759 >gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter ruber DSM 13855] gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM 13855] gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] Length = 247 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL ED+ D+ F+ + L + GYEV G D R+ L+L DI +P++ G+E Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R P+L ++ +T AV L KPF +L+ + LL Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALL 120 >gi|148549436|ref|YP_001269538.1| CheA signal transduction histidine kinase [Pseudomonas putida F1] gi|148513494|gb|ABQ80354.1| CheA signal transduction histidine kinase [Pseudomonas putida F1] Length = 765 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++IL+ +D +R K LG GY+V +G ++ +R E F LL+TDI MP MD Sbjct: 640 VRKRILVVDDSLTVRELQRKLLGNRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMD 699 Query: 61 GIE---LARRATELDPDLKVMFIT 81 GIE L RR L L VM ++ Sbjct: 700 GIELVTLVRRDQRLQ-SLPVMVVS 722 >gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Pseudonocardia sp. P1] Length = 225 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+AED+ + FL K L AG+ V +G +D F L++ DI +P MD Sbjct: 1 MSSRILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G ++ RR + V+ +T +V ++KPF +L+ V Sbjct: 61 GFDVLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQ 115 >gi|325106499|ref|YP_004276153.1| histidine kinase [Pedobacter saltans DSM 12145] gi|324975347|gb|ADY54331.1| histidine kinase [Pedobacter saltans DSM 12145] Length = 1366 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 12/123 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+D++R FL ++L Y V+ +G D +E ++++D+ MP MDG+E Sbjct: 1113 VLVVEDNDELRTFLAQSL-SGEYLVLEARDGVEGLDLALKEVPDIIVSDVTMPNMDGMEF 1171 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPF-------HLRDLVNEV 114 + E+ + V+ +T A+ L+ A + L+KPF H+R+L+N Sbjct: 1172 CSLVKKNEVSSHIPVIMLTAMAS-HLHQVEGLESGANIYLTKPFSVQLLELHIRNLINSA 1230 Query: 115 NRL 117 N L Sbjct: 1231 NAL 1233 >gi|322421164|ref|YP_004200387.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127551|gb|ADW15111.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 769 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL +D++D+ K L + GY+VV+ +G A + R +P L++TD MP M G Sbjct: 643 RILFVDDEEDVVFAGKKMLERLGYQVVTGRDGVEALEIFRADPGAVDLVITDQTMPRMTG 702 Query: 62 IELARRATELDPDLKVMFITGF-AAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 IEL+R DL V+ TG ++V N + A +V KP ++ + R+ Sbjct: 703 IELSRELAATRSDLPVILCTGLGSSVDRNLQREEAEQAGIREVAFKPLDREEMAALIRRV 762 Query: 118 L 118 L Sbjct: 763 L 763 >gi|251788984|ref|YP_003003705.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247537605|gb|ACT06226.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 224 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KAL + G+ V +G +A +++E ++L++ D+ +P +DG+ Sbjct: 2 RLLLVEDHPELAHWLKKALSEVGFAVDLVGDGVAADQLLQQEAYTLVVLDVSLPRLDGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + +L V+ +T A VA L+KPF L +L + LL Sbjct: 62 LLARLRKRGQNLPVLLLTARAEVADRVKGLNLGADDYLTKPFELAELEARLRALL 116 >gi|255691713|ref|ZP_05415388.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622598|gb|EEX45469.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1337 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+D++R +L+ L Y V +C NG A V+E L+L+D++MPEM G Sbjct: 1066 QRILIVEDNDELRSYLVSLLSPQ-YYVQACCNGREALVIVKEFWPELILSDVMMPEMQGD 1124 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I AL + N + + KPF ++ L + L Sbjct: 1125 EL---CAAIKKDVETSHIPVLLLTALGDEKNILDGLTIGADEYIVKPFSVKLLKANIANL 1181 Query: 118 LT 119 L+ Sbjct: 1182 LS 1183 >gi|218779221|ref|YP_002430539.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218760605|gb|ACL03071.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 466 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D+ MR FL L + GYEV + G A +++ + LLL DI + ++ G+ Sbjct: 7 HKILIVDDELGMREFLGLMLERDGYEVSTAGGGREALGLLKKHSYDLLLCDIRLGDISGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 E+ R A L+P V+ I+ F++ Sbjct: 67 EVLRMAMGLNPKPVVIMISAFSST 90 >gi|149908169|ref|ZP_01896833.1| putative transcriptional regulator CpxR [Moritella sp. PE36] gi|149808711|gb|EDM68644.1| putative transcriptional regulator CpxR [Moritella sp. PE36] Length = 242 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + L + L + GY+V S + G SA D ++ +P L+L D+++P ++G++ Sbjct: 22 QILIVDDDIQLCELLTEVLVEDGYQVHSVHCGESALDYMQAKPVDLVLLDVMLPNINGLQ 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A + D + ++KP+ + +L+ + +L Sbjct: 82 VARRICQRFAT-PILMLTALADESAMLDCLQAGADQYIAKPYSVPELLTRIQVML 135 >gi|187478422|ref|YP_786446.1| nitrogen regulation protein NR(I) [Bordetella avium 197N] gi|115423008|emb|CAJ49538.1| nitrogen regulation protein NR(I) [Bordetella avium 197N] Length = 491 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + + + +DD +R L KAL +AG S + D + + S+L++DI MP DG+ Sbjct: 2 KPVWIVDDDQAIRWVLEKALARAGIPTRSFSQAGDVLDALERDTPSVLVSDIRMPGGDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR E L V+ +T FA + + L+KPF + + V + R + Sbjct: 62 ELLRRIKEHHAALPVIVMTAFADLDSTVSAFQRGAFDYLAKPFDVNEAVALIQRAM 117 >gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330] Length = 229 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L +A+ AGY V S +G + EP+ ++ DI +P+MDGI Sbjct: 2 RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGAD---DYITKPFHIEEVLARLRALI 116 >gi|34497033|ref|NP_901248.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC 12472] gi|34102890|gb|AAQ59254.1| probable sensory box/GGDEF family protein [Chromobacterium violaceum ATCC 12472] Length = 712 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D L+ L GY+V S +GA A D + P L+L D MP MDG+ + Sbjct: 7 ILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHPPDLILLDFSMPGMDGLAV 66 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R +L+P D+ ++F++ + D A + KPF +L+ VN L + Sbjct: 67 CRE-LKLNPRTRDIPILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNTHLDL 124 >gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 228 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L L + GY + +GA R F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +P + ++ +T + D + KPF R+L + LL K Sbjct: 64 CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRK 120 >gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19] gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19] Length = 226 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 +ILLAEDD D+ R L +L AGY V +G A+ EP+ ++ D+ +P++DG+ Sbjct: 2 RILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEAHFLGDTEPYDCIILDLGLPKIDGVS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR ++ P V+ +T A + L+KPFH +L+ + L+ Sbjct: 62 VLERWRREGKMTP---VLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALV 116 >gi|303234315|ref|ZP_07320955.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia magna BVS033A4] gi|302494568|gb|EFL54334.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia magna BVS033A4] Length = 220 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q IL+ +DD+ +R + +L +A + V +C + + + F L++ D++MP+MD Sbjct: 1 MGQNILVVDDDEQIRSVIETSLKRAQFSVYTCASAKETLS-LSLDQFDLMIFDVMMPDMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G EL R E D ++F+T + A + A + KPF +LV+ V Sbjct: 60 GFELCRNVRE-KVDCPILFLTAKSTEADVAEGLAIGGDDYIRKPFTPLELVSRVK 113 >gi|298502455|ref|YP_003724395.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|298238050|gb|ADI69181.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] Length = 251 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 7 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 66 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 67 YLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 119 >gi|224370797|ref|YP_002604961.1| predicted two-component system transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223693514|gb|ACN16797.1| predicted two-component system transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 498 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ + + + GY+V + NG A + +++ TDI MPEMDG+EL Sbjct: 9 ILVVDDEEGILDVSEEYFERKGYDVYTARNGIEAIEIIKQVKIGCCFTDINMPEMDGLEL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 A R +D L ++ +TG+ +L+ KN V L KP +L + R++ Sbjct: 69 AERIRGIDNTLPIVIMTGYP--SLDNTIRTLKNGVVDFLVKPVNLEQMELSYKRII 122 >gi|218961624|ref|YP_001741399.1| hypothetical protein CLOAM1337 [Candidatus Cloacamonas acidaminovorans] gi|167730281|emb|CAO81193.1| hypothetical protein CLOAM1337 [Candidatus Cloacamonas acidaminovorans] Length = 118 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%) Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD 74 R + L GYEV +N SA +K + L L D +MP M+G+EL + + DP Sbjct: 15 REVIGDFLSSHGYEVDLADNADSALEKFEPGKYQLALIDYMMPGMNGLELMKILLKQDPK 74 Query: 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + +TG+ V S + + KPF L++L+N + + Sbjct: 75 IFCLIMTGYPTVDSAFQSVVDGASDYIVKPFQLKELLNTIGSYI 118 >gi|157363872|ref|YP_001470639.1| response regulator receiver protein [Thermotoga lettingae TMO] gi|157314476|gb|ABV33575.1| response regulator receiver protein [Thermotoga lettingae TMO] Length = 124 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D + +R+ + L K GY V +G A +K+R+E L++ DI+MP +D Sbjct: 1 MGYRVLVVDDSEVLRKIVSFNLIKEGYSVQEAKDGREALEKLRQEKPDLVILDIMMPYID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEV 114 G E+ R + D +LK + + A D PK A L+KPF L+ EV Sbjct: 61 GFEVLRTMRK-DENLKEIPVIMLTAKGGESD---PKTALELGANSFLTKPFSPLKLLEEV 116 Query: 115 NRLL 118 R++ Sbjct: 117 RRVI 120 >gi|117168587|gb|ABK32252.1| Amb4 [Sorangium cellulosum] Length = 461 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++L+ +D+ + L L K G++ + A A + + E F +++TD+ M M Sbjct: 1 MSGRVLIVDDERGVCELLDAGLKKRGFQAAWRTSAAEALELLGAEDFDVVVTDMTMRGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R + PDL V+ IT F ++ + ++KPF L L V R L Sbjct: 61 GLELCERIAQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERAL 118 >gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD D+ L L GY + +G +A ++ +P+ ++ D+++P +DG+ Sbjct: 8 KQILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLMLPNVDGL 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L ++ I+ ++ L+KPF +++L+ + L Sbjct: 68 EICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 123 >gi|294777639|ref|ZP_06743090.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294448707|gb|EFG17256.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1374 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED D+R +L + L A Y ++ NG R+E L++TD++MP M+G E Sbjct: 1114 KLLVVEDHADIRLYL-RVLFSATYNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 1172 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E DLK I AL D N K ++ + KPF+ L +V RL+ Sbjct: 1173 CCRILKE---DLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1229 >gi|229524197|ref|ZP_04413602.1| chemotaxis protein CheV [Vibrio cholerae bv. albensis VL426] gi|229337778|gb|EEO02795.1| chemotaxis protein CheV [Vibrio cholerae bv. albensis VL426] Length = 308 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV+S +G AYDK+ E SL+++DI Sbjct: 182 RRILIADDSSVARKQVQRAIESLGFEVISTQDGKVAYDKLVEMLNDGPISNQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHNEL-KDLYVILHSSLSGV 275 >gi|218779782|ref|YP_002431100.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761166|gb|ACL03632.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 704 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 N++IL+ +D++ M + L + GY E + + A A K + L TD+ MP Sbjct: 583 NERILVVDDEEMMVTMIESMLERLGYTAECATRSTDALALFKADPNAYDALFTDLTMPGF 642 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GI+LA++ E+ PDL V+ TGF+ ++ ++KP +RDL Sbjct: 643 TGIQLAQKCKEIRPDLPVVLCTGFSERTTGHIIDSVGINVTMNKPIVIRDL 693 >gi|94264477|ref|ZP_01288265.1| PAS:Response regulator receiver:CHASE [delta proteobacterium MLMS-1] gi|93455108|gb|EAT05332.1| PAS:Response regulator receiver:CHASE [delta proteobacterium MLMS-1] Length = 876 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 42/68 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED++ R+ L L G+ V++ NNG A + R++P L+L D++MPE+DG E Sbjct: 757 ILVAEDNEFNRQLLTDLLQNHGHRVLAANNGREAVEIYRDKPCQLILMDMMMPELDGPEA 816 Query: 65 ARRATELD 72 R L+ Sbjct: 817 TRAIRRLE 824 >gi|15891637|ref|NP_357309.1| two component response regulator for C4-dicarboxylate transport [Agrobacterium tumefaciens str. C58] gi|15160081|gb|AAK90094.1| two component response regulator for C4-dicarboxylate transport [Agrobacterium tumefaciens str. C58] Length = 454 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD +R+ +++ L G V S + A + E+ +++TD+ MP M G+E Sbjct: 7 IFLVDDDSQLRKAMVQTLELDGLPVTSFSRAEQALAALNEDFDGIIITDVRMPGMTGLEF 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++D DL V+ ITG V + D+ ++KPF +V R L Sbjct: 67 FDHVRKIDADLPVILITGHGDVPMAVDALHNGAYDFIAKPFPAERMVESARRAL 120 >gi|332187187|ref|ZP_08388927.1| his Kinase A domain protein [Sphingomonas sp. S17] gi|332012887|gb|EGI54952.1| his Kinase A domain protein [Sphingomonas sp. S17] Length = 639 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 ++LL EDD + + AL + G++ V CN+ A + P L+++D++MP G Sbjct: 516 RVLLVEDDPRVLAATLAALRELGHDPVPCNDPREAEGLLARHPGIRLIVSDVLMPHQTGP 575 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 EL PD+ V+F+TGFA A + + +VL KPF L L V Sbjct: 576 ELIASLRPRYPDVAVLFVTGFAGDA---QATGFEGHEVLRKPFTLMGLERAV 624 >gi|319405636|emb|CBI79259.1| two-component system response regulator [Bartonella sp. AR 15-3] Length = 121 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +K+++ ED++ +M+ F LI+A GYE + NG A D R SL+L DI +P Sbjct: 1 MLKKVMIVEDNELNMKLFRDLIEA---CGYETIETRNGLIALDLARSSKPSLILMDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEV 114 E+ GI++ ++ E D +LK + I A A+ D A + +SKP + + V Sbjct: 58 EISGIDIIKQLKE-DEELKSIPIIAVTAFAMKGDEERIRASGCEEYMSKPISVTHFITTV 116 Query: 115 NRLL 118 L Sbjct: 117 KSFL 120 >gi|313683208|ref|YP_004060946.1| two component, sigma54 specific, transcriptional regulator, fis family [Sulfuricurvum kujiense DSM 16994] gi|313156068|gb|ADR34746.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Sulfuricurvum kujiense DSM 16994] Length = 384 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI + EDD +MR+ L A+ YE+ + N A K+ ++ F L+++DI MP MDGI Sbjct: 2 KIAIVEDDINMRKSLEIAMSDYEKYEIHTFKNARDALKKL-DDTFELVISDINMPGMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E + L +V+ ITG A + +S L KPF + LV + R TI Sbjct: 61 EFVKT---LGGKFEVIIITGNATLTRAIESIQLGVKDFLLKPFEIETLVTAIERTATI 115 >gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA-YDKVREEPFSLLLTDIVMPEMD 60 ++L+ EDD +R L + L AG+EV++ G A + R P L+L D+++P++D Sbjct: 4 RSRVLVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRSRP-DLVLLDVMLPDID 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LA R + V+F+T + A + + + ++KPF + +L+ + +L Sbjct: 63 GLLLAERLVHAIGPVPVVFVTARDSTA-DKVAGLARGDDYVTKPFRMEELIARIQAVL 119 >gi|256370488|ref|YP_003107999.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM 4915] gi|256000651|gb|ACU49050.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM 4915] Length = 239 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 67 MELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLVERV 118 Query: 115 NRLL 118 +L Sbjct: 119 KAVL 122 >gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1149 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ + K GYE+ NG A + E F L+ DI MPEMDG+E Sbjct: 1016 RILLAEDNVINQKVAKRLFKKMGYEISVAQNGLEAVAMIGENEFELVFMDIQMPEMDGLE 1075 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDL 110 R + P + I A A+ D A L+KPF L DL Sbjct: 1076 ATREIIKRWPSERPRIIA-LTANAMREDRENCFAAGMDGYLTKPFKLDDL 1124 >gi|239826626|ref|YP_002949250.1| response regulator receiver protein [Geobacillus sp. WCH70] gi|312111666|ref|YP_003989982.1| response regulator receiver protein [Geobacillus sp. Y4.1MC1] gi|239806919|gb|ACS23984.1| response regulator receiver protein [Geobacillus sp. WCH70] gi|311216767|gb|ADP75371.1| response regulator receiver protein [Geobacillus sp. Y4.1MC1] Length = 119 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MR + L K G+EVV+ +G A +K +E ++ DI MPEMDGI Sbjct: 3 RILVVDDAAFMRMMIKDILTKNGHEVVAEAADGLQAIEKYKETRPDIVTMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++D + KV+ + A+ D+ + KPF ++ +N+ L Sbjct: 63 TALKEIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFVVKPFQADRVIEAINKTL 118 >gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 46/79 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + R + L AGYEV +NG SA + + ++ L++ D++MPEMDG E Sbjct: 3 QILVVEDDKNTARLMKAVLMHAGYEVFCADNGVSALELMDKQHIDLIVLDVMMPEMDGYE 62 Query: 64 LARRATELDPDLKVMFITG 82 ++ + + ++ +T Sbjct: 63 FTKQLRGSNDNTPILMVTA 81 >gi|78358043|ref|YP_389492.1| two component Fis family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220448|gb|ABB39797.1| two component transcriptional regulator, Fis family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 465 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 52/118 (44%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN ++L+ +D+D +R L L GYEV G E P L+ DI +P MD Sbjct: 1 MNARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ D L V+ I+G + ++ + KP L +V N+ L Sbjct: 61 GLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKAL 118 >gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 229 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ + RFL GYEV +G S + E + L+L DI++P MD Sbjct: 1 MKEKILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ ++ E + D+ V+ +T V ++KPF + +L V L Sbjct: 61 GYEVLKKIRE-NSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRK 119 Query: 121 KN 122 +N Sbjct: 120 RN 121 >gi|332184941|ref|ZP_08386690.1| sensory box protein [Sphingomonas sp. S17] gi|332014665|gb|EGI56721.1| sensory box protein [Sphingomonas sp. S17] Length = 682 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 66/116 (56%), Gaps = 5/116 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ +F ++AL G V N A+A ++++ + F L+ +D++MP GI Sbjct: 568 VLIVEDNIEVGQFAVEALKTLGCRTVIATNAAAALEELKADATRFDLVFSDVMMPGQSGI 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A T L P L+++ +G++ V + S+ +L KP+ L +L +++RL Sbjct: 628 DFAHDITRLYPGLRILLTSGYSQVIADEGSHG---FALLRKPYTLAELAQQIDRLF 680 >gi|330943323|gb|EGH45700.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 153 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M Sbjct: 25 GETVLIVDDEPSVRMLVAEVISGLGYNCMEAADAQSGLQILQSDTRIDLLISDIGLPGGM 84 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 85 NGREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 143 >gi|298374416|ref|ZP_06984374.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] gi|298268784|gb|EFI10439.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] Length = 1369 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +L ED++D+ R+L+ A + Y VV NG +K E ++++D++MP M+ Sbjct: 1104 LRQTLLFVEDNEDLCRYLMNAF-QTDYRVVIAKNGKVGLEKALEILPDVIVSDVMMPVMN 1162 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE A + E + V+ +T A + L KPF L L ++N LL Sbjct: 1163 GIECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKINNLL 1222 >gi|317130824|ref|YP_004097106.1| response regulator receiver protein [Bacillus cellulosilyticus DSM 2522] gi|315475772|gb|ADU32375.1| response regulator receiver protein [Bacillus cellulosilyticus DSM 2522] Length = 120 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR L K + AGYEVV NG A D E L+ DI MPEM+GI Sbjct: 3 KLLITDDAAFMRMVLKKIVIDAGYEVVGEAANGQEAVDLYNEHKPDLVTMDITMPEMNGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + ++ E++P+ KV+ + + D+ + KPF Sbjct: 63 DALKKIKEINPNAKVVMCSAMGQQNMVVDAIQQGAIDFIVKPF 105 >gi|218885572|ref|YP_002434893.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756526|gb|ACL07425.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 120 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ I+ +D +R+ + L AGYEV+ +G A K+ P +++TD+ MP MD Sbjct: 1 MSKLIMTVDDSASIRQMVGFTLRNAGYEVIEAKDGKDAVSKL-SGPIKMVITDLNMPNMD 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RA + V+ +T + + A + KPF L+ V ++L Sbjct: 60 GIELIRQIRANPAYKFIPVVMLTTESQATRKQEGKAAGATGWIVKPFQPEQLLAVVKKVL 119 >gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 41/65 (63%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ + RFL L GY+V ++G K + EPF L++ DI++P ++GI Sbjct: 4 KKILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHINGI 63 Query: 63 ELARR 67 E+ R+ Sbjct: 64 EVLRK 68 >gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae] gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A D+ E + LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T V L KPF +L+ V LL Sbjct: 62 VIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLL 116 >gi|114568052|ref|YP_755206.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338987|gb|ABI69835.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 395 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 MN+KILL +DD+ + + LG E+++ NN ++ +++ P +++++D MP + Sbjct: 1 MNKKILLVDDDEKILASYRRQLG-LRLELLTANNAEKGWEILQKHGPIAVVISDYKMPGV 59 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLV 111 DGI R E+ PD + +TG+A + + ++ N + L+KP ++D V Sbjct: 60 DGIAFLERVKEIAPDTVRIMLTGYADIDMAINAVNQGNIFRFLTKPCPIKDFV 112 >gi|255282754|ref|ZP_05347309.1| two-component response regulator [Bryantella formatexigens DSM 14469] gi|255266775|gb|EET59980.1| two-component response regulator [Bryantella formatexigens DSM 14469] Length = 573 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 16/118 (13%) Query: 2 NQKILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE 58 N +LL +D++++ + ++K + G+ V+ S +NG A + V E +++TDI MP Sbjct: 42 NYTVLLVDDEEEVTQIIMKKIDWEGMGFSVIGSASNGVKALELVEEYQPDVVMTDIRMPY 101 Query: 59 MDGIELARRATELDPDLKVMFITGF-------AAVALNPDS------NAPKNAKVLSK 103 MDG+ELA R P K++ TGF AV L + NAP+ +V S+ Sbjct: 102 MDGMELAGRIKAEFPTTKILLFTGFDEFEYAKEAVRLEVEEYILKPVNAPELTRVFSR 159 >gi|254501466|ref|ZP_05113617.1| nitrogen regulation protein [Labrenzia alexandrii DFL-11] gi|222437537|gb|EEE44216.1| nitrogen regulation protein [Labrenzia alexandrii DFL-11] Length = 479 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL +AGY V +N ++ + V L++TD+VMP+ + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYTVRLTSNASTLWRWVSAGDGDLVITDVVMPDENIFDV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R ++ P+L V+ ++ ++ + L KPF L++L V R L Sbjct: 66 LPRIKKMRPELPVLVMSAQNTFMTAIKASEKGAYEYLPKPFDLKELTGIVQRAL 119 >gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 252 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 9/130 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---------KVREEPFSLLLT 52 +IL+ ED+D +R ++ AL GY++ + NNG SA + KV E F LL+ Sbjct: 18 THRILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLIL 77 Query: 53 DIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 D+++P+++G+++ R + ++ ++ A+ L+KPF +R+LV Sbjct: 78 DLMLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137 Query: 113 EVNRLLTIKN 122 L+ +N Sbjct: 138 RCRALIRRQN 147 >gi|116750190|ref|YP_846877.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699254|gb|ABK18442.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 466 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ +D++D+ + L ++L G EV ++G A + + EP LLL D+ MPEM+G Sbjct: 4 ETLLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPEMNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL + P L V+ +T + L + ++KPF LV +N+ L Sbjct: 64 LELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKAL 120 >gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 220 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL ED+D MR+ + L KAGYEV+ +G A + E F L + D+++P++DG Sbjct: 2 ERILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMVPKIDGW 61 Query: 63 ELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + R+ + + + ++ +T + D A + ++KPF L+ L+ V LL Sbjct: 62 TICRKIRK-ESKIPIIMLTARSTEDDELFGFDLGAD---EYITKPFSLKILLARVKVLLK 117 Query: 120 IKN 122 K+ Sbjct: 118 RKD 120 >gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 231 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 15/122 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+AED+ + + L K GYE+++ +G A K E L++ DI++P MD Sbjct: 1 MKNRVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIMLPSMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G E+ +R E + ++ +T + L D ++KPF +R+LV Sbjct: 61 GFEICKRVRE-KSSVPIIMVTAKEEEVDKILGLELGADD-------YITKPFSIRELVAR 112 Query: 114 VN 115 V Sbjct: 113 VK 114 >gi|307543718|ref|YP_003896197.1| two-component response regulator NtrC [Halomonas elongata DSM 2581] gi|307215742|emb|CBV41012.1| two-component response regulator NtrC [Halomonas elongata DSM 2581] Length = 468 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 57/113 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +DD +R L +AL + EV ++ EEP +L+TDI MP +DG++ Sbjct: 6 RVMIVDDDRAIRWVLERALAQPDLEVECVERADRVLPRLLEEPPDVLVTDIRMPGIDGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E PDL V+ +T + + S + L KPF + + + V R Sbjct: 66 LMARVREAHPDLPVIVMTAHSDLDSAVASYQGGAFEYLPKPFDVDEALALVRR 118 >gi|302872623|ref|YP_003841259.1| response regulator receiver protein [Caldicellulosiruptor obsidiansis OB47] gi|302575482|gb|ADL43273.1| response regulator receiver protein [Caldicellulosiruptor obsidiansis OB47] Length = 123 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KI++ +D + + L K + K G+EV C NG A +K E L+ D+ MP ++G Sbjct: 2 KKIMIVDDSPMIHKLLKKEIEKLGHEVCYCATNGQEAVEKYFELKPDLIFMDVTMPVLEG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + E D KV+F+T L ++ ++ KPF D+ N +N Sbjct: 62 DAAYNKICEKDKSCKVVFLTAIGDKELLNVNDTSNVVTIIKKPFKGEDIQNAIN 115 >gi|298229827|ref|ZP_06963508.1| DNA-binding response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254794|ref|ZP_06978380.1| DNA-binding response regulator [Streptococcus pneumoniae str. Canada MDR_19A] Length = 245 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++GI+LA E P + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 YLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|289523558|ref|ZP_06440412.1| sporulation initiation phosphotransferase F [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503250|gb|EFD24414.1| sporulation initiation phosphotransferase F [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 120 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR L L K GYE+ +NG A +E ++ DI MPEMDGI Sbjct: 3 KVLIVDDAAFMRMMLKDILMKNGYEIAGEVSNGVEAIAAYKEMKPDIVTMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + ++DP+ K++ ++ AL ++ + KPF +++ +++ L+ Sbjct: 63 TAVKEIKKIDPNAKIVMVSAMGQQALVVEAIKAGALDFIVKPFQPDRVLDALSKALS 119 >gi|260551684|ref|ZP_05825758.1| two-component system response regulatory system response regulator [Acinetobacter sp. RUH2624] gi|260405427|gb|EEW98921.1| two-component system response regulatory system response regulator [Acinetobacter sp. RUH2624] Length = 497 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD MR L K + G++V + +A +++ + ++LTDI MP +DG+ Sbjct: 5 KIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PDL V+ +T + + S + L KPF + + + VNR + Sbjct: 65 FLSKVKNSHPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAI 119 >gi|322419717|ref|YP_004198940.1| response regulator receiver protein [Geobacter sp. M18] gi|320126104|gb|ADW13664.1| response regulator receiver protein [Geobacter sp. M18] Length = 130 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+LL +DDD +R L L +GYEV G D E ++LTD+ MP++DG Sbjct: 4 NKKVLLIDDDDLVRLTLHAYLEDSGYEVRDVAGGREGLDCFAREAPDIVLTDLRMPDLDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ ++ P V+ ++G + S+ +A +L +++++V+ + R+L Sbjct: 64 FQILAAIKKISPATPVIIVSGAGDAGI---SHGEASAFLLKPVINMKEMVSLIERVL 117 >gi|2947107|gb|AAC28777.1| regulatory protein BvrR [Brucella abortus] Length = 237 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 67 MELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLVERV 118 Query: 115 NRLL 118 +L Sbjct: 119 KAVL 122 >gi|332703197|ref|ZP_08423285.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] gi|332553346|gb|EGJ50390.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] Length = 118 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++++ L + L G E +G A + + F L + D+ MP M GIE Sbjct: 2 RVLLVDDEEELVSALAERLSFRGIEATWATSGQKALELASKVCFELAVLDVKMPGMGGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L R+ E+ P +K++F+TG + S L KP + DL+ ++ Sbjct: 62 LKRKLVEICPGIKILFLTGHGSEDDFRRGSAESGREFYLVKPVAIEDLIKKMQ 114 >gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 227 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L GY+V++ +NG A ++ L++ D++MPEMDGIE Sbjct: 7 KILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHSPHLIILDVMMPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A + DL IT F A + A +A ++KP + LV++V LL Sbjct: 67 -ACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALL 123 >gi|330896143|gb|EGH28364.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 726 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDGI 62 IL+ +D+ +R I+ L GY + ASA + + + LL+TDI +P ++G+ Sbjct: 602 ILVVDDETGLREIAIELLTDQGYAPHEAIDSASALKQFEKLDRLDLLITDIGLPGPVNGL 661 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ E P LKV+FITG+ V + KVLSKPF + +L + V L Sbjct: 662 ALAKTLKEQRPQLKVLFITGYTKV--EGITEGLTLGKVLSKPFSVVELSDYVRSAL 715 >gi|330875154|gb|EGH09303.1| response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 119 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ EDD +R ++ L + Y V+ + A V + LL+TD +P+M Sbjct: 6 RTILVVEDDAIVRMLIVDVLEELEYTVLEAEDATKALAIVTDNANHIDLLMTDQGLPDMK 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G LA++ EL P+L V+F +G++ + + P + KPF + L ++V +L Sbjct: 66 GTALAKKVIELRPELPVLFASGYSE-----NIDVPPGMYAIGKPFSIDQLRDKVKSILV 119 >gi|270307580|ref|YP_003329638.1| DNA-binding response regulator [Dehalococcoides sp. VS] gi|270153472|gb|ACZ61310.1| DNA-binding response regulator [Dehalococcoides sp. VS] Length = 123 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D++ +R+ + L K Y++V NG A + RE+ F L+L DI+MP++DG+ Sbjct: 5 KILVADDEEHIRQLVCSILDK-NYQIVQAKNGEEAVKESREQNFDLILMDIMMPKLDGLA 63 Query: 64 LA--RRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 + + ++ +TG LN + A ++KPF+ ++L N+V+ + Sbjct: 64 ACCMLKGDKQTSSTPIIMLTG-VGYELNKKLSQQLGADGYITKPFNPQELRNKVSEFI 120 >gi|152992735|ref|YP_001358456.1| two-component response regulator [Sulfurovum sp. NBC37-1] gi|151424596|dbj|BAF72099.1| two-component response regulator [Sulfurovum sp. NBC37-1] Length = 220 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ +++ L +GYEV + +G A + + + L + DI P +DG+ Sbjct: 2 KILLLEDELMLQTAMVEYLTDSGYEVDAHEDGKEALESSLQNSYDLFIFDINTPSIDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + + +FI+ + + L KPFHL++L + RLL + N Sbjct: 62 LLDKLQTEKIFVPTIFISAITEIEQISKAYELGCYDYLKKPFHLKELTLHIERLLKMAN 120 >gi|85857963|ref|YP_460165.1| response regulator [Syntrophus aciditrophicus SB] gi|85721054|gb|ABC75997.1| response regulator with sigma 54 interaction domain [Syntrophus aciditrophicus SB] Length = 452 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 6 LLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD R ++K L GY+V ++G SA + V PF L+L DI M + GIE Sbjct: 7 VLVVDDDFAHRTMLKTLISGWGYDVSEADDGQSAIEAVHRRPFDLILMDIRMVRISGIEA 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L+P + ++ +T +A+V ++ L+KP +L Sbjct: 67 LEEIRRLNPAIPIILMTAYASVETAVEALKKGAYDYLTKPLDFDEL 112 >gi|332709992|ref|ZP_08429948.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332351363|gb|EGJ30947.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1738 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L + GY NG + +P+ L+L D+ MPEMDG+ Sbjct: 1484 RILLAEDNIVNQQLALQLLKRMGYRADVAGNGLEVLQALSRQPYDLVLMDVQMPEMDGLT 1543 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 +R E P +I A A+ D +A + +SKP + +LV +++ Sbjct: 1544 ATQRICEQWPAHLRPWIIAMTANAMEGDREMCLSAGMDDYISKPIQVPELVRALSQ 1599 >gi|327478927|gb|AEA82237.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 1564 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +L+ ED+ +R +++ L + GY+V+ + SA + ++ LL++D +P ++G + Sbjct: 1446 VLVVEDEAAVRMLVVEVLQELGYQVLEACDATSALPYLHGDQRLDLLVSDFGLPGLNGRQ 1505 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN-----AKVLSKPFHLRDLVNEVNRLL 118 L A + P+LKV+FITG+ PD + +L+KPF + L + L+ Sbjct: 1506 LVESARQHRPELKVLFITGYV-----PDDEMRNDFIGPGMDILAKPFSIDILAARIRSLI 1560 >gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] Length = 246 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R L +L AG++V+S +G A D L + D+++P+MDG + Sbjct: 11 VLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGFTI 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ E D +L V+F+T V ++KPF L ++V + +L Sbjct: 71 LRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVL 124 >gi|256819054|ref|YP_003140333.1| two component transcriptional regulator, winged helix family [Capnocytophaga ochracea DSM 7271] gi|256580637|gb|ACU91772.1| two component transcriptional regulator, winged helix family [Capnocytophaga ochracea DSM 7271] Length = 251 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 45/81 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ ILL EDD + L L +G++V NG ++K ++E + + + D++MP DG Sbjct: 16 NKHILLVEDDPNFGTVLKDYLVMSGFDVTLAKNGMEGFEKFKKETYDMCILDVMMPYKDG 75 Query: 62 IELARRATELDPDLKVMFITG 82 LA+ E D + ++F+T Sbjct: 76 FTLAKEIREKDEKIPIIFLTA 96 >gi|307152241|ref|YP_003887625.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306982469|gb|ADN14350.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 128 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 10/116 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+DD+D R L L + G++V +G KV +E +L+ D MPE+ G E Sbjct: 11 KVLIADDDEDSRLLLNVLLSEEGWQVCEAKDGQETLSKVSQESPDILILDNRMPELSGTE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD----SNAPKNAKVLSKPFHLRDLVNEVN 115 + + + + +L ++ IT + PD + + L+KPF+ DL + +N Sbjct: 71 VYQYLRQKNTNLAIILITAY------PDLEQLAASLGITYFLNKPFNFSDLFDLMN 120 >gi|167766452|ref|ZP_02438505.1| hypothetical protein CLOSS21_00958 [Clostridium sp. SS2/1] gi|167711861|gb|EDS22440.1| hypothetical protein CLOSS21_00958 [Clostridium sp. SS2/1] Length = 245 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 10/114 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L YE ++ +G A +K++ +P ++L DI MP MD Sbjct: 22 MKYKILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIKMKP-DIILLDINMPRMD 80 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDL 110 GIE+ R R+ L P ++F+T A V + N + ++KPF LR+L Sbjct: 81 GIEVCRLIRSKVLCP---ILFLT--ARVDEDDKINGLLSGGDDYITKPFSLREL 129 >gi|153008164|ref|YP_001369379.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|239833135|ref|ZP_04681464.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium LMG 3301] gi|151560052|gb|ABS13550.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] gi|239825402|gb|EEQ96970.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium LMG 3301] Length = 239 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 67 MELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLVERV 118 Query: 115 NRLL 118 +L Sbjct: 119 KAVL 122 >gi|189425481|ref|YP_001952658.1| response regulator receiver protein [Geobacter lovleyi SZ] gi|189421740|gb|ACD96138.1| response regulator receiver protein [Geobacter lovleyi SZ] Length = 137 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L EDD + + + L + +G +V + +NG + RE ++LTDI MP M+G Sbjct: 11 KLLFVEDDAVVCHAIGRMLAREFSGAQVYTADNGQRGLELFREHAPEIVLTDINMPVMNG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 IE+A R EL P + +TG++ NA + KP L L + + R Sbjct: 71 IEMAERIRELQPATSFIVLTGYSEKGYLDRFNAIGFYDYIIKPADLDRLFDTIER 125 >gi|26987005|ref|NP_742430.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida KT2440] gi|24981622|gb|AAN65894.1|AE016217_6 sigma-54 dependent response regulator [Pseudomonas putida KT2440] Length = 468 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +VV+ +++ + ++++DI MP +DG++ Sbjct: 12 QVILVDDDPHLRQALSQTLDLAGLKVVALAEAQGLAERIEADWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + D +L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 72 LLEQLHGRDSELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFATDALLDSVRRALALR 129 >gi|32477796|ref|NP_870790.1| two-component system, regulatory protein [Rhodopirellula baltica SH 1] gi|32448353|emb|CAD77867.1| two-component system, regulatory protein [Rhodopirellula baltica SH 1] gi|327538114|gb|EGF24802.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 221 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 57/114 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILL +D +R + A+ G+ V++ N A + P L + D+ MP G+ Sbjct: 31 ESILLVDDTVVLRERMAVAMQSRGFRVLTAGNYDEAVAVFSQSPTDLAVLDLRMPGRSGL 90 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +L RR E+ PD +V+ ++GF ++ + D+ LSKP D+++ R Sbjct: 91 DLLRRLLEIKPDCRVLMLSGFGSIPASIDAVRAGAVNFLSKPADTDDILSSFIR 144 >gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1286 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + L GY+++ NG A + L+L DI MP +DG+E Sbjct: 1166 ILLAEDNKANIKTFSSYLSAKGYDILLATNGQQAIELATIHQPDLILMDIQMPGIDGLE- 1224 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A R LDP L + I A+A+ D + A L+KP L+ L + +LL Sbjct: 1225 AIRQIRLDPQLVNIPIVALTALAMTGDRDRCLQAGANDYLTKPVKLKQLATTIQQLL 1281 >gi|86131764|ref|ZP_01050361.1| two-component system response regulator [Dokdonia donghaensis MED134] gi|85817586|gb|EAQ38760.1| two-component system response regulator [Dokdonia donghaensis MED134] Length = 236 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 10/109 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L Y+V NG ++K +++ + L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGTVLKDYLMMNDYDVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 LA+ E + ++ ++F+T A AL D K KV L+KPF Sbjct: 65 FTLAKEIREKNEEIPIIFLT---AKALKED--VLKGYKVGADDYLNKPF 108 >gi|67924013|ref|ZP_00517465.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67854153|gb|EAM49460.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 377 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D D R L L + GY+V NG +A + + + P L+L DI MP M+G Sbjct: 5 SSNILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTICQVPPDLILLDINMPSMNG 64 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ ++ E D+ V+FI+ V + +SKPF +++ + LT Sbjct: 65 YEVCQQLKEDVKTKDIPVIFISALDDVLDKVKAFDVGGVDYISKPFQTEEVIARIENQLT 124 Query: 120 IK 121 I+ Sbjct: 125 IQ 126 >gi|312865265|ref|ZP_07725493.1| putative response regulator MprA [Streptococcus downei F0415] gi|311099376|gb|EFQ57592.1| putative response regulator MprA [Streptococcus downei F0415] Length = 231 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAED++ + R AL GY+V NG A D RE + L++ DI+MP Sbjct: 1 MTMKILLAEDEEQLGRVYRAALEHQGYQVDQAVNGQEAVDLARENAYDLMILDIMMPVKT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E + V+ +T + + D+ A + L+KP L++L+ Sbjct: 61 GLEALSEIRDSGDRTHVIMLTAMSEINDRVTGLDAGAD---EYLTKPISLKELL 111 >gi|307946942|ref|ZP_07662277.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4] gi|307770606|gb|EFO29832.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4] Length = 691 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMP-EMDG 61 +LL EDD +RR + + L + Y V NG + P F ++LTD+VMP G Sbjct: 572 VLLVEDDPLLRRTIQELLEVSSYIVTVAENGQKGLQMYKATPDSFDVVLTDVVMPGNYMG 631 Query: 62 IELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ R ++ +L+V+F++G++ A ++ + +PK+ +++ KP + LV + RLLT Sbjct: 632 PQMIREMRKIRKNLRVIFMSGYSQEATVHGNGVSPKDLRLI-KPVSRQLLVEVIERLLT 689 >gi|283852919|ref|ZP_06370179.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio sp. FW1012B] gi|283571677|gb|EFC19677.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio sp. FW1012B] Length = 1137 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL EDD+D + + L + G+EV + GASA ++ +P F + +TD MP+++G Sbjct: 1013 RILFVEDDEDQLLTIPRVLAQLGHEVSAHGGGASALARLAADPDAFDVCITDFDMPDLNG 1072 Query: 62 IELARRATELDPDLKVMFITG 82 +ELA + + P L V+ ++G Sbjct: 1073 LELAGKIAAVAPRLPVILVSG 1093 >gi|283786785|ref|YP_003366650.1| transcriptional regulator [Citrobacter rodentium ICC168] gi|282950239|emb|CBG89875.1| transcriptional regulator [Citrobacter rodentium ICC168] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSESYALAVLDINMPGIDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF L +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNAGADDYLPKPFELEEL 108 >gi|237719591|ref|ZP_04550072.1| rteB [Bacteroides sp. 2_2_4] gi|229450860|gb|EEO56651.1| rteB [Bacteroides sp. 2_2_4] Length = 456 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ +GI+L Sbjct: 4 ILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQNVDLILSDLRLPDHEGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 64 LKWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYIAKPVNPEELLKKISECL 117 >gi|154506203|ref|ZP_02042941.1| hypothetical protein RUMGNA_03745 [Ruminococcus gnavus ATCC 29149] gi|210612116|ref|ZP_03289175.1| hypothetical protein CLONEX_01374 [Clostridium nexile DSM 1787] gi|225027853|ref|ZP_03717045.1| hypothetical protein EUBHAL_02113 [Eubacterium hallii DSM 3353] gi|257414190|ref|ZP_04745516.2| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] gi|153793702|gb|EDN76122.1| hypothetical protein RUMGNA_03745 [Ruminococcus gnavus ATCC 29149] gi|210151719|gb|EEA82726.1| hypothetical protein CLONEX_01374 [Clostridium nexile DSM 1787] gi|224954800|gb|EEG36009.1| hypothetical protein EUBHAL_02113 [Eubacterium hallii DSM 3353] gi|257200898|gb|EEU99182.1| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] Length = 245 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 10/114 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L YE ++ +G A +K++ +P ++L DI MP MD Sbjct: 22 MKYKILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIKMKP-DIILLDINMPRMD 80 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDL 110 GIE+ R R+ L P ++F+T A V + N + ++KPF LR+L Sbjct: 81 GIEVCRLIRSKVLCP---ILFLT--ARVDEDDKINGLLSGGDDYITKPFSLREL 129 >gi|17988319|ref|NP_540953.1| transcriptional regulatory protein chvI [Brucella melitensis bv. 1 str. 16M] gi|23502938|ref|NP_699065.1| DNA-binding response regulator BvrR [Brucella suis 1330] gi|62290933|ref|YP_222726.1| DNA-binding response regulator BvrR [Brucella abortus bv. 1 str. 9-941] gi|82700844|ref|YP_415418.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148560408|ref|YP_001259894.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC 25840] gi|161620004|ref|YP_001593891.1| transcriptional regulatory protein chvI [Brucella canis ATCC 23365] gi|163844109|ref|YP_001628513.1| transcriptional regulatory protein chvI [Brucella suis ATCC 23445] gi|189025147|ref|YP_001935915.1| transcriptional regulator [Brucella abortus S19] gi|225626471|ref|ZP_03784510.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo] gi|225853520|ref|YP_002733753.1| transcriptional regulator ChvI [Brucella melitensis ATCC 23457] gi|237816441|ref|ZP_04595434.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308 A] gi|254690226|ref|ZP_05153480.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 6 str. 870] gi|254694714|ref|ZP_05156542.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 3 str. Tulya] gi|254696341|ref|ZP_05158169.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 2 str. 86/8/59] gi|254700722|ref|ZP_05162550.1| Transcriptional regulatory protein chvI [Brucella suis bv. 5 str. 513] gi|254705094|ref|ZP_05166922.1| Transcriptional regulatory protein chvI [Brucella suis bv. 3 str. 686] gi|254707389|ref|ZP_05169217.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis M163/99/10] gi|254709068|ref|ZP_05170879.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis B2/94] gi|254718148|ref|ZP_05179959.1| Transcriptional regulatory protein chvI [Brucella sp. 83/13] gi|254731257|ref|ZP_05189835.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 4 str. 292] gi|256030593|ref|ZP_05444207.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis M292/94/1] gi|256045695|ref|ZP_05448573.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 1 str. Rev.1] gi|256158589|ref|ZP_05456479.1| Transcriptional regulatory protein chvI [Brucella ceti M490/95/1] gi|256254000|ref|ZP_05459536.1| Transcriptional regulatory protein chvI [Brucella ceti B1/94] gi|256258479|ref|ZP_05464015.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 9 str. C68] gi|256262996|ref|ZP_05465528.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260169499|ref|ZP_05756310.1| Transcriptional regulatory protein chvI [Brucella sp. F5/99] gi|260546196|ref|ZP_05821936.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260562995|ref|ZP_05833481.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567438|ref|ZP_05837908.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755765|ref|ZP_05868113.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758988|ref|ZP_05871336.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760712|ref|ZP_05873055.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884789|ref|ZP_05896403.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68] gi|261215041|ref|ZP_05929322.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261221140|ref|ZP_05935421.1| regulatory protein BvrR [Brucella ceti B1/94] gi|261314875|ref|ZP_05954072.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10] gi|261316567|ref|ZP_05955764.1| regulatory protein BvrR [Brucella pinnipedialis B2/94] gi|261751232|ref|ZP_05994941.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513] gi|261755797|ref|ZP_05999506.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686] gi|261759025|ref|ZP_06002734.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265983104|ref|ZP_06095839.1| regulatory protein BvrR [Brucella sp. 83/13] gi|265987640|ref|ZP_06100197.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1] gi|265992115|ref|ZP_06104672.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1] gi|265997100|ref|ZP_06109657.1| regulatory protein BvrR [Brucella ceti M490/95/1] gi|294851319|ref|ZP_06791992.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297247318|ref|ZP_06931036.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306837662|ref|ZP_07470531.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|306842796|ref|ZP_07475437.1| two component transcriptional regulator [Brucella sp. BO2] gi|306843509|ref|ZP_07476110.1| two component transcriptional regulator [Brucella sp. BO1] gi|17984093|gb|AAL53217.1| transcriptional regulatory protein chvi [Brucella melitensis bv. 1 str. 16M] gi|23348972|gb|AAN30980.1| DNA-binding response regulator BvrR, putative [Brucella suis 1330] gi|62197065|gb|AAX75365.1| BvrR, DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82616945|emb|CAJ12048.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|148371665|gb|ABQ61644.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC 25840] gi|161336815|gb|ABX63120.1| Transcriptional regulatory protein chvI [Brucella canis ATCC 23365] gi|163674832|gb|ABY38943.1| Transcriptional regulatory protein chvI [Brucella suis ATCC 23445] gi|189020719|gb|ACD73441.1| Transcriptional regulatory protein [Brucella abortus S19] gi|225618128|gb|EEH15171.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo] gi|225641885|gb|ACO01799.1| Transcriptional regulatory protein chvI [Brucella melitensis ATCC 23457] gi|237788508|gb|EEP62723.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308 A] gi|260096303|gb|EEW80179.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260153011|gb|EEW88103.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156956|gb|EEW92036.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260669306|gb|EEX56246.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671144|gb|EEX57965.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675873|gb|EEX62694.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874317|gb|EEX81386.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68] gi|260916648|gb|EEX83509.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919724|gb|EEX86377.1| regulatory protein BvrR [Brucella ceti B1/94] gi|261295790|gb|EEX99286.1| regulatory protein BvrR [Brucella pinnipedialis B2/94] gi|261303901|gb|EEY07398.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10] gi|261739009|gb|EEY27005.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261740985|gb|EEY28911.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513] gi|261745550|gb|EEY33476.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686] gi|262551568|gb|EEZ07558.1| regulatory protein BvrR [Brucella ceti M490/95/1] gi|263003181|gb|EEZ15474.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1] gi|263092870|gb|EEZ17045.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264659837|gb|EEZ30098.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1] gi|264661696|gb|EEZ31957.1| regulatory protein BvrR [Brucella sp. 83/13] gi|294819908|gb|EFG36907.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297174487|gb|EFH33834.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306276200|gb|EFM57900.1| two component transcriptional regulator [Brucella sp. BO1] gi|306287069|gb|EFM58577.1| two component transcriptional regulator [Brucella sp. BO2] gi|306407220|gb|EFM63430.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|326410088|gb|ADZ67153.1| Transcriptional regulatory protein [Brucella melitensis M28] gi|326539805|gb|ADZ88020.1| Transcriptional regulatory protein chvI [Brucella melitensis M5-90] Length = 239 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 67 MELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLVERV 118 Query: 115 NRLL 118 +L Sbjct: 119 KAVL 122 >gi|329926029|ref|ZP_08280666.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939492|gb|EGG35844.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 353 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAG--YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I+ +D+ ++R L + +AG Y V+ NG A + + P LL+TDI MPEMDG Sbjct: 4 IITVDDEKMIKRSLRALIERAGTTYSVIGEATNGREALELIHYHPPHLLITDICMPEMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +EL + ++++ I+G+ + + L KP H + ++ + R+ Sbjct: 64 LELIAEVKQRYQQMEIIVISGYGEFSYAQQALRHNVTDYLLKPIHPDEFLSTLQRI 119 >gi|330505803|ref|YP_004382672.1| two component, sigma54 specific, fis family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328920089|gb|AEB60920.1| two component, sigma54 specific, fis family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 446 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 63/118 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++++ +D+ +R + + L +G+EV +C + A A V + ++++D+ MP D Sbjct: 1 MSAQVIVVDDEAAIREAVQQWLELSGFEVRTCASAAEALAVVDRDFPGIVVSDVRMPGSD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L + ++D DL V+ +TG V + + + KPF L++ V R L Sbjct: 61 GLQLLDKLLQIDSDLPVILVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRAL 118 >gi|313496627|gb|ADR57993.1| Two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida BIRD-1] Length = 468 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +VV+ +++ + ++++DI MP +DG++ Sbjct: 12 QVILVDDDPHLRQALSQTLDLAGLKVVALAEAQGLAERIEADWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + D +L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 72 LLEQLHGRDSELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFATDALLDSVRRALALR 129 >gi|288962184|ref|YP_003452479.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288914450|dbj|BAI75935.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 882 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MDGI 62 ILL +DD +R L L G+ V++ N A + E LLL+D+VMP MDG+ Sbjct: 609 ILLVDDDPTVRDMLAGLLRGWGHRVIAAANANEALVVLDGPERLDLLLSDVVMPPGMDGM 668 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSN-APK-NAKVLSKPFHLRDLVNEVNRL 117 ELAR A + P L V+ +GFAA A + P + +++KPF + +L ++ R+ Sbjct: 669 ELARHAARMRPGLPVLLASGFAAHAAGTPAALGPGFDVAMIAKPFSIDELRRQLARI 725 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED R L +GY + +GA+A V + L+L D+ MP MDG+ Sbjct: 754 RLLIAEDLAVNRELLTALFRDSGYSIDLVADGAAAVKAVEAGDYDLVLMDVQMPGMDGLA 813 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + P DL +M +T A+ A + + KP+ L+ ++ LL Sbjct: 814 ACRAIRAMPPPRGDLPIMALTAAASEAERRECRDAGMTGHIGKPYQRDILLGQIADLL 871 >gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] Length = 228 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L L + GY + +GA R F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +P + ++ +T + D + KPF R+L + LL K Sbjct: 64 CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLKRK 120 >gi|262173020|ref|ZP_06040697.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio mimicus MB-451] gi|261890378|gb|EEY36365.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio mimicus MB-451] Length = 450 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVEMFADGTSALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD ++ L LG AG+EV G S ++RE P L++ D+ +P++DG Sbjct: 2 KRILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRLREAPPDLVILDLGLPDLDGG 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ARR + ++ ++ +T +V + + KPFH +L+ + Sbjct: 62 EVARR-IRVGAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQ 113 >gi|255283042|ref|ZP_05347597.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM 14469] gi|255266344|gb|EET59549.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM 14469] Length = 226 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R L KA A Y ++ NGA + + L++ DI+MP+MDG E Sbjct: 4 ILIVEDDAAVR-LLTKARLSAKYHILEAENGAKGLEVLDHHHVDLIIADIMMPKMDGYEF 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E ++ V+ +T A + A ++KP +L + LL Sbjct: 63 VRTLREGSMNIPVIMLTAMNTFAHKKEGYASGIDDYMTKPIQYEELEWHIEALL 116 >gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 241 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E+ ++G AY + ++ +L D+++PEMD Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|213963120|ref|ZP_03391378.1| sigma-54 dependent transcriptional regulator/response regulator [Capnocytophaga sputigena Capno] gi|213954204|gb|EEB65528.1| sigma-54 dependent transcriptional regulator/response regulator [Capnocytophaga sputigena Capno] Length = 466 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL EDD + L + L + GY+V+ C A K S++ TD+ +P+ D Sbjct: 1 MKNPILLVEDDVVFSKMLSRFLERNGYDVIGCYTLEEA-QKNLNASLSMVFTDLRLPDGD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 GI + E P+L V+ +T +A V+ ++ +SKPF D++N Sbjct: 60 GINFLKAVKENFPNLPVVVMTSYAEVSTAVEAMKLGAFDYISKPFQQEDVLN 111 >gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q I++ +DD+ + L ++L GYEV + +NG + +L+ D++MP++D Sbjct: 1 MRQHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + ++ +T ++ L KPF L +L+ V LL Sbjct: 61 GWEVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRR 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|153003412|ref|YP_001377737.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026985|gb|ABS24753.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 816 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 49/80 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ D+R L + L + G+ V G +A + R+ + L DI +PE+DG E+ Sbjct: 703 ILVIEDNPDIRETLAELLRRRGHAVREAEGGRAALELARDLAPEVALVDIGLPELDGFEV 762 Query: 65 ARRATELDPDLKVMFITGFA 84 A+R E+ P+++++ +TG+ Sbjct: 763 AQRLREVAPEVRLVALTGYG 782 >gi|78223760|ref|YP_385507.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195015|gb|ABB32782.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 480 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+A+D++ MR L KAL K G+ V +G A ++ + L + DI MP + G+ Sbjct: 4 HRILVADDEESMRWVLSKALRKKGFSVDLARDGEEALRLIQSGDYDLAILDIKMPGISGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL---RDLVNEVNR 116 +L R EL DL ++ +T A++ ++ ++KPF L ++ +VNR Sbjct: 64 DLLDRVKELKSDLLMVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIIEKVNR 120 >gi|332294875|ref|YP_004436798.1| response regulator receiver protein [Thermodesulfobium narugense DSM 14796] gi|332177978|gb|AEE13667.1| response regulator receiver protein [Thermodesulfobium narugense DSM 14796] Length = 119 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR+ L L K G+EVV NG A +K +E L L DI MPE DG+ Sbjct: 3 KILITDDATFMRKMLKDILTKNGHEVVGEGTNGLEALEKYKELKPDLTLLDITMPERDGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + DP+ K++ ++ A+ ++ + KPF ++ V + L+ Sbjct: 63 WALKEIKAFDPNAKIIMVSAMGQQAIVIEAIQAGARDFVVKPFQPDRVLEAVRKALS 119 >gi|320332968|ref|YP_004169679.1| response regulator receiver modulated diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319754257|gb|ADV66014.1| response regulator receiver modulated diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 463 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 47/81 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R+ +++ L G+ V+S NG +A D R+ L+L D MP M G ++ Sbjct: 1 MLVVDDDDVLRQTIVRLLEGNGHTVLSAENGQTAVDLCRQHDVHLMLLDYFMPGMTGQDV 60 Query: 65 ARRATELDPDLKVMFITGFAA 85 R + L+++ TG+A+ Sbjct: 61 VREVRTFNQKLQIVLQTGYAS 81 >gi|256060055|ref|ZP_05450237.1| Transcriptional regulatory protein chvI [Brucella neotomae 5K33] gi|261324031|ref|ZP_05963228.1| regulatory protein BvrR [Brucella neotomae 5K33] gi|261300011|gb|EEY03508.1| regulatory protein BvrR [Brucella neotomae 5K33] Length = 239 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 67 MELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLVERV 118 Query: 115 NRLL 118 +L Sbjct: 119 KAVL 122 >gi|254497324|ref|ZP_05110131.1| hypothetical protein LDG_1805 [Legionella drancourtii LLAP12] gi|254353458|gb|EET12186.1| hypothetical protein LDG_1805 [Legionella drancourtii LLAP12] Length = 321 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +L+ ED R + K LG+ G + N+G +K P L++TDI MP M+ Sbjct: 205 KSVLIIEDSKVFRHQITKLLGENGMNCIVANDGQEGLEKFMAAPDKIDLIITDIEMPRMN 264 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIE+AR+ E + ++F + + AL + A ++ L K F ++++N++ +L+ Sbjct: 265 GIEMARKIHEECKAMPILFSSSISNPALIAEIKA-EHGYFLVK-FQPQEVLNQIQHMLS 321 >gi|269793171|ref|YP_003318075.1| response regulator receiver modulated CheW protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100806|gb|ACZ19793.1| response regulator receiver modulated CheW protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 301 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 KIL+AED +RR + AL + G+ V +G +A+D++ +E F LL+TDI MP++D Sbjct: 179 KILVAEDSPLIRRLIQDALAEGGFHNVELVGHGKAAWDRLNDEDDHFDLLITDIEMPKLD 238 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R+ E ++ V+ + A + + + +SKP + LV V RLL Sbjct: 239 GLGLTRKVKESPRHKNIPVIVFSSIVAEDIKRKAQSVGAEAQISKP-EIPFLVETVARLL 297 >gi|229590094|ref|YP_002872213.1| putative sensor histidine kinase/response regulator fusion protein [Pseudomonas fluorescens SBW25] gi|229361960|emb|CAY48860.1| putative sensor histidine kinase/response regulator fusion protein [Pseudomonas fluorescens SBW25] Length = 831 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + +++ EDD +R ++ L + GY + +A + + LL+TD+ +P M+G Sbjct: 711 EAVVVVEDDPAVRMLVVNVLDELGYTAHQAADARTALPLLESDLRVDLLVTDVGLPGMNG 770 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +LA A + P L+V+F+TG+A A +++KPF + L ++ ++++ Sbjct: 771 RQLAEIARQHRPGLRVLFMTGYAEKAAERQGFLEDGMDMVAKPFSIDLLATKIRSMISV 829 >gi|229526229|ref|ZP_04415633.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae bv. albensis VL426] gi|229336387|gb|EEO01405.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae bv. albensis VL426] Length = 450 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVEMFADGTSALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|224824747|ref|ZP_03697854.1| two component, sigma54 specific, transcriptional regulator, Fis family [Lutiella nitroferrum 2002] gi|224603240|gb|EEG09416.1| two component, sigma54 specific, transcriptional regulator, Fis family [Lutiella nitroferrum 2002] Length = 447 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 53/112 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L EDD +R +AL AG+ V + SA + + L++D+ +P DG+ L Sbjct: 8 VFLVEDDPVVRHGCAQALRLAGFAVTDFGDAESALAALEQASPGALVSDVRLPGQDGLAL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++A LDP+L V+ ITG V L + + KPF L + R Sbjct: 68 LQQARRLDPELPVILITGHGDVTLAVQAMREGAYDFIEKPFPSERLADVTGR 119 >gi|218779349|ref|YP_002430667.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760733|gb|ACL03199.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 868 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++ILL +D+ +R+ +AL + GY+V+ +G +A+ +++P L+LTD+ MP + Sbjct: 743 ERILLVDDESAVRKVTRRALERLGYDVMEAPDGLTAWGVFQQDPNGVDLILTDLTMPGLT 802 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G LA+R + D+ ++ I+G++ Sbjct: 803 GEVLAQRIRKERQDMPIILISGYS 826 >gi|212691048|ref|ZP_03299176.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855] gi|212666280|gb|EEB26852.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855] Length = 1350 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD+D+RR++ + L + + SCN G A + + + L+++D++MPEMDG+ Sbjct: 1091 KVLVVEDDEDIRRYICRELASDYHTLESCN-GKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 LARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L + + L+ + V+ +T N + ++KPFH+ L Sbjct: 1150 LCHKIKQNVNLN-HIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEIL 1198 >gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] Length = 235 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ +R +M ++ + A+ L D L+KPF R+L+ Sbjct: 61 GMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAVL 118 >gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1727 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ K L + GY NG D ++ +P+ ++L D+ MP+MDG+E Sbjct: 1440 RILLAEDNVTNQKVATKLLQRLGYRADIAGNGVEVLDALKRQPYDVVLMDVQMPQMDGLE 1499 Query: 64 LARR 67 +RR Sbjct: 1500 ASRR 1503 >gi|16125330|ref|NP_419894.1| cell cycle histidine kinase CckA [Caulobacter crescentus CB15] gi|221234069|ref|YP_002516505.1| sensory transduction histidine kinase/receiver protein CckA [Caulobacter crescentus NA1000] gi|4574734|gb|AAD24191.1|AF133718_1 cell cycle histidine kinase CckA [Caulobacter crescentus CB15] gi|13422380|gb|AAK23062.1| cell cycle histidine kinase CckA [Caulobacter crescentus CB15] gi|220963241|gb|ACL94597.1| sensory transduction histidine kinase/receiver protein CckA [Caulobacter crescentus NA1000] Length = 691 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL ED+D +R + L GYEV+ +G A E LL++D++MP +DG Sbjct: 572 RILFVEDEDAVRSVAARLLRARGYEVLEAADGEEALIIAEENAGTIDLLISDVIMPGIDG 631 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++A VMFI+G+A + L KP ++ L V + L Sbjct: 632 PTLLKKARGYLGTAPVMFISGYAEAEFSDLLEGETGVTFLPKPIDIKTLAERVKQQL 688 >gi|323697591|ref|ZP_08109503.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. ND132] gi|323457523|gb|EGB13388.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio desulfuricans ND132] Length = 448 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL +D L + L AGY+V +C A + + L++TD MP G Sbjct: 4 NIRILAVDDSKSTLEVLKRNLVPAGYDVFTCGRVDEAVALLEDVVIDLVITDYRMPAASG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L + PD+++M ITG+ ++ ++ + L+KPF +L++ V R++ Sbjct: 64 LDLIKHVRANLPDVEIMMITGYPSIPGAVEAIKDGAGEYLAKPFTTEELLSSVGRIV 120 >gi|258622309|ref|ZP_05717335.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585633|gb|EEW10356.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 450 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVEMFADGTSALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 218 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED++ + + L AGYE +G A + ++EE F L+L DI++P MD Sbjct: 1 MKINILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALNLLKEESFDLILMDIMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL +R +L ++ V+F+T +A + + KPF +L+ + +L Sbjct: 61 GFELMKRIKDL--NIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVL 116 >gi|188579431|ref|YP_001922876.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342929|gb|ACB78341.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 957 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +G S ++ + LL+TD+ +P M+ Sbjct: 838 ETVLVVDDEPSVRMLVAEVLEDLGYAAIEAADGPSGLRVLQSDARVDLLITDVGLPGGMN 897 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A P LKV+FITG+A A + +VL+KPF + L + + ++ Sbjct: 898 GRQVADAARVTRPGLKVLFITGYAENAAVGNGYLEPGMQVLTKPFVMEALASRIRDMI 955 >gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] Length = 235 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ + A+ L D L+KPF R+L+ Sbjct: 61 GIEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAVL 118 >gi|146275720|ref|YP_001165880.1| PAS/PAC sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|145322411|gb|ABP64354.1| PAS/PAC sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 632 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 + +L+ +DD +R + + L + G V +GA A ++V + PF LLLTD MP ++ Sbjct: 517 RTVLVVDDDHSVRTIIAEQLREFGVMVEEAASGADAVERVISAKTPFDLLLTDFAMPGLN 576 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G++ R L D+ +TG+A + D+ ++L KP DL Sbjct: 577 GLQTIERLRALGTDIPCALMTGYADDRI--DTTGGTQTRLLRKPIAFEDL 624 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 EVV+ N+G A + + F+++L D+ MP+MDG E+A Sbjct: 13 EVVTANSGREALRHLLDGEFAVILLDVFMPDMDGYEVA 50 >gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241] gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241] Length = 211 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E+V NG A+ VR E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAGNGEEAFTFVRTERPDIVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRIKQYDETIKILILSSFS 86 >gi|332828824|gb|EGK01516.1| hypothetical protein HMPREF9455_02349 [Dysgonomonas gadei ATCC BAA-286] Length = 1442 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N K+L+ +D+DD+R FLI K + V +G K E L++ D++MP MDG Sbjct: 1189 NYKMLIIDDNDDIRNFLIDEFSKY-FMVEVAEDGQKGLQKAIEINPDLIICDVMMPAMDG 1247 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR E + ++ +T +++ + + KPF L+ LV V +L+ Sbjct: 1248 FEVTRRLKEDFQTCHIPIILLTAHSSIEHQLEGIQSGADAYIMKPFSLKYLVTRVFKLI 1306 >gi|310818385|ref|YP_003950743.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|309391457|gb|ADO68916.1| Response regulator [Stigmatella aurantiaca DW4/3-1] Length = 152 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 8/124 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-------REEPFSLLLTDI 54 + +I++AED +MR L + L + GY+V+ +G S + P L++TD+ Sbjct: 27 SPRIMIAEDHAEMRALLRQVLVREGYQVIEAEDGPSLIRALIGGMLAEPTVPPDLIITDM 86 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 MP G+E+ R D + IT F AL+ ++ A VL KPF +DL V Sbjct: 87 RMPGCTGLEVLARLRREDRCTPFILITAFGDEALHEEATR-LGASVLDKPFAPQDLRALV 145 Query: 115 NRLL 118 RL+ Sbjct: 146 QRLI 149 >gi|297538875|ref|YP_003674644.1| response regulator receiver protein [Methylotenera sp. 301] gi|297258222|gb|ADI30067.1| response regulator receiver protein [Methylotenera sp. 301] Length = 122 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + +L AGY+VV +G DK +E+ L+LTD MP MD Sbjct: 1 MAKTILAVDDSGSLRQMVAFSLKAAGYDVVQAVDGQDGLDKAKEKTVDLVLTDQNMPIMD 60 Query: 61 GIELARRATELDPDLKV--MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + +L KV + +T ++ + A L KPF + L+ V +++ Sbjct: 61 GLTLIKNLRDLGSYQKVPILMLTTESSDEMKAKGKAAGANGWLVKPFDPKRLIEVVQKVI 120 >gi|281419815|ref|ZP_06250814.1| DNA-binding response regulator TrcR [Prevotella copri DSM 18205] gi|281406115|gb|EFB36795.1| DNA-binding response regulator TrcR [Prevotella copri DSM 18205] Length = 243 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ + L L G+E+ + +G E+ +L+ D++MP+MDG E+ Sbjct: 6 VLLVEDETSLAMILSDILEAQGFEMRTARDGEEGLRMFDEQKPDVLVADVMMPKMDGFEM 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D V+F+T +AV + L KPF +++L+ + L Sbjct: 66 VRRIRKTDSRTPVLFLTARSAVNDVVEGFELGGNDYLKKPFAIQELIVRIKSL 118 >gi|223984863|ref|ZP_03634970.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM 12042] gi|223963156|gb|EEF67561.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM 12042] Length = 989 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 ++LLAED++ R +I+ L G ++ NG A D VRE+P F L+L DI MPEM+ Sbjct: 848 RVLLAEDNELNREIVIELLNSCGIKLTCAQNGRQALDLVREQPADAFDLILMDIHMPEMN 907 Query: 61 GIELARRATEL-DPDLKVMFITGFAAVALNPD 91 G E L DP + I A A D Sbjct: 908 GYEATEAIRNLADPVKAALPIIAMTADAFEED 939 >gi|162454291|ref|YP_001616658.1| response regulator [Sorangium cellulosum 'So ce 56'] gi|161164873|emb|CAN96178.1| response regulator [Sorangium cellulosum 'So ce 56'] Length = 464 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++L+ +D+ R L K L + GY V + +G A + E P +++TD+ MP MD Sbjct: 7 QSSRVLVVDDEASARSGLEKLLRQEGYTVDAAADGVEAVEVAAERPPDVVITDLKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L + E DP L V+ +T F V Sbjct: 67 GVALLGKLREQDPALPVIVVTAFGDV 92 >gi|170726058|ref|YP_001760084.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811405|gb|ACA85989.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1168 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 44/81 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ +LLAED + L KAGYEV NNG A E+ + L+L D+ MPEMDG Sbjct: 883 NKLLLLAEDSMSNQLVAGAMLTKAGYEVEFANNGVEAVSMAAEKNYGLILMDMRMPEMDG 942 Query: 62 IELARRATELDPDLKVMFITG 82 +E A+ PD ++ +T Sbjct: 943 VEAAQLILLSQPDTIILAMTA 963 >gi|332880807|ref|ZP_08448478.1| PglZ domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681190|gb|EGJ54116.1| PglZ domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 518 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN +LL DD+ ++ + I L K GYEV + +NG A DK E + L+L D MP + Sbjct: 2 MNNGLLLWVDDEIELLKAHILFLEKKGYEVETVSNGQDALDKCSETTYDLILLDENMPGL 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E R E+ P V+ +T + + K A L KP VN LLT Sbjct: 62 SGLETLSRIKEITPVTPVVMVTKSEEENIMDQAIGSKIADYLIKP------VNPTQILLT 115 Query: 120 IK 121 +K Sbjct: 116 LK 117 >gi|330967662|gb|EGH67922.1| response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 119 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ EDD +R ++ L + Y V+ + A V + LL+TD +P+M Sbjct: 6 RTILVVEDDAIVRMLIVDVLEELEYTVLEAEDATKALAIVTDNANHIDLLMTDQGLPDMK 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA++ EL P+L V+F +G++ + + P + KPF + L ++V +L Sbjct: 66 GTALAKKVIELRPELPVLFASGYSE-----NIDVPPGMYAIGKPFSIDQLRDKVKSIL 118 >gi|330998200|ref|ZP_08322026.1| PglZ domain protein [Paraprevotella xylaniphila YIT 11841] gi|329568892|gb|EGG50690.1| PglZ domain protein [Paraprevotella xylaniphila YIT 11841] Length = 518 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN +LL DD+ ++ + I L K GYEV + +NG A DK E + L+L D MP + Sbjct: 2 MNNGLLLWVDDEIELLKAHILFLEKKGYEVETVSNGQDALDKCSETAYDLILLDENMPGL 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E R E+ P V+ +T + + K A L KP VN LLT Sbjct: 62 SGLETLSRIKEITPVTPVVMVTKSEEENIMDQAIGSKIADYLIKP------VNPTQILLT 115 Query: 120 IK 121 +K Sbjct: 116 LK 117 >gi|320353798|ref|YP_004195137.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122300|gb|ADW17846.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1073 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + +LL EDD + + L + GY V++ A RE LLLTD+++P M+ Sbjct: 942 ETVLLVEDDRAILTMVTTMLERLGYTVLASRLPEQALHLAREWTGKIDLLLTDVILPGMN 1001 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G L ++ L P L V++++G+ + P + + KPF DL Sbjct: 1002 GHALRQQLAGLHPQLNVLYMSGYTDNIIMPQEVVSAGVQFIHKPFTRSDL 1051 >gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GYEV+ +G +A E L++ D+ +PEMDG+E+ Sbjct: 4 VLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPEMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RR V+ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 64 CRRLRADGKSFPVLVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALLR 118 Query: 120 IKN 122 N Sbjct: 119 RGN 121 >gi|304384082|ref|ZP_07366536.1| response regulator [Prevotella marshii DSM 16973] gi|304334798|gb|EFM01074.1| response regulator [Prevotella marshii DSM 16973] Length = 534 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L +D+ + R I L K GY+V++ +NG A ++ R + F L+L D +MP + G Sbjct: 4 NGLLLWVDDEIEHLRAHILFLEKKGYDVITVSNGTDAIEQCRRQTFDLVLLDEMMPGLTG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E +R E+ P V+ +T + + K A L KP VN LLT+K Sbjct: 64 LETLQRIKEIAPSTPVVMVTKSEEEDIMNQAIGAKIADYLIKP------VNPNQILLTLK 117 >gi|296274534|ref|YP_003657165.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM 7299] gi|296098708|gb|ADG94658.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM 7299] Length = 668 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 14/126 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL EDD +R L L ++ + +G A + +++ L++TDI MP +DG Sbjct: 8 NLSILYVEDDTTVRESLSSTLKILAKKIYTAKDGLEALNILKDNKIDLIITDIKMPNLDG 67 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL+++ +LD ++ ++ T A+ LN D+ ++KP ++ L+ + Sbjct: 68 LELSKKIQDLDLNIPILITTAHDEIDYLHRAIELNVDA-------FITKPLNISSLIQSI 120 Query: 115 NRLLTI 120 +L I Sbjct: 121 TKLAKI 126 >gi|291278593|ref|YP_003495428.1| hypothetical protein DEFDS_0160 [Deferribacter desulfuricans SSM1] gi|290753295|dbj|BAI79672.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 408 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRR-FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L +D M R F + + GY+++S NG DK+RE ++L D VMP+++G Sbjct: 13 KVLAIDDSPTMHRLFKMIFTEENGYQLISAYNGEEGLDKLRESDPDIILLDFVMPKLNGF 72 Query: 63 ELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + A+ E L + ++ IT A + N N ++KPF DL +V +L+ Sbjct: 73 QFAKLIREDLKKNTPILLITSKAEKVGDRFINKFSNIDCIAKPFQAEDLERKVREMLS 130 >gi|237708643|ref|ZP_04539124.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229457343|gb|EEO63064.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1344 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 >gi|224368653|ref|YP_002602815.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfobacterium autotrophicum HRM2] gi|223691369|gb|ACN14652.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfobacterium autotrophicum HRM2] Length = 455 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 58/116 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +RR L K L A + + NG A +R+ F +++ DI +P+ +GIEL Sbjct: 13 ILVVDDEKSIRRLLEKELASARRCITTAGNGREALIAIRKNVFDVIVLDISLPDANGIEL 72 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R E ++++ ITG+ V ++ ++KPF L L + + I Sbjct: 73 MSRFHEEILGVQIILITGYGDVDDAVEAMKTGACDYITKPFDLGRLEQVIEKAYQI 128 >gi|163847042|ref|YP_001635086.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524865|ref|YP_002569336.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] gi|163668331|gb|ABY34697.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448744|gb|ACM53010.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] Length = 128 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 12/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D R + L + GY VV+ +G A + L++TD+ MP MDGIEL Sbjct: 4 IMIVDDYVPSHRLMSFVLEQYGYTVVTAIDGVQALRHLDTYAVDLVVTDLTMPRMDGIEL 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 R RA E + V+ +TG + +A K A V L+KP DL++EV R Sbjct: 64 VREMRANERFSGIPVIIVTGSV-----EERDAVKAAGVGVNAFLTKPVDSDDLIHEVERQ 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 234 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D + + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|331683897|ref|ZP_08384493.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli H299] gi|331078849|gb|EGI50051.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli H299] Length = 461 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|294775873|ref|ZP_06741372.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294450242|gb|EFG18743.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1344 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 >gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +DD ++ + L K + Y V++ NG A +K++ P ++L DI MP+MD Sbjct: 1 MGYKILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTAP-DIILLDINMPQMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E+ R+ + ++F+T + + KPF L++L Sbjct: 60 GLEVCRKIRD-KISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKEL 108 >gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM 10507] gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM 10507] Length = 223 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 +KIL+A+DD +R + L + YEV+ NG A + + P SL++ D++MP+ DG Sbjct: 2 KKILVADDDYLLRDLIKDILEEKNYEVLEAKNGQEAVEIFNQNPEISLVILDVMMPQYDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 +E+ RR L ++ V+ +T S ++KPFH Sbjct: 62 MEVLRR-IRLQSNVPVLILTALGDTQNELSSLRSGANDYMAKPFH 105 >gi|158521369|ref|YP_001529239.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158510195|gb|ABW67162.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 144 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ L + K G V +GA A VR F + + D+ M +MDGIE+ Sbjct: 13 VLLVDDEVGYVNVLANRMTKRGLLVEKATSGAEAIQAVRRRDFDVAILDLKMEDMDGIEV 72 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R ++D ++V+ +TG + A D L KP L DL++++N+ Sbjct: 73 LRILKQMDQRMEVIMLTGHGSQAAARDGIKYGAFDYLLKPCELEDLLDKINQ 124 >gi|12964068|emb|CAC29256.1| putative regulatory protein [Bartonella quintana] Length = 240 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MD Sbjct: 7 ITQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + D+ V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDIPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLL 118 V +L Sbjct: 119 VKAIL 123 >gi|26988225|ref|NP_743650.1| CheA signal transduction histidine kinase [Pseudomonas putida KT2440] gi|24982965|gb|AAN67114.1|AE016340_5 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 762 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++IL+ +D +R K LG GY+V +G ++ +R E F LL+TDI MP MD Sbjct: 637 VRKRILVVDDSLTVRELQRKLLGNRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMD 696 Query: 61 GIE---LARRATELDPDLKVMFIT 81 GIE L RR L L VM ++ Sbjct: 697 GIELVTLVRRDQRLQ-SLPVMVVS 719 >gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1353 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ + L + GY NG + +++ P+ ++L D+ MP+MDG+E Sbjct: 1205 RILLAEDNAVNQKVALHILKRMGYRADVAANGLEVLEALQQRPYDVILMDVQMPKMDGLE 1264 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNR 116 R P + +I A AL D A +SKP + L +NR Sbjct: 1265 TTERICAQWPPSQRPWIIAMTANALAGDRERCFAAGMDDYISKPIKIEALAAALNR 1320 >gi|325293904|ref|YP_004279768.1| chemotaxis receiver protein [Agrobacterium sp. H13-3] gi|325061757|gb|ADY65448.1| chemotaxis receiver protein [Agrobacterium sp. H13-3] Length = 122 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R AL AGY++ +G K + F L++TD+ MP M+ Sbjct: 1 MSAHILTVDDSASIRMTTKIALTGAGYQITEAVDGQDGLAKAKAANFDLIVTDLNMPNMN 60 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ A R + + ++F+T + + + A L+KPF LV V ++L Sbjct: 61 GLEMIEALRQSPAHTGIPIIFLTTESDADMKARAKAAGATGWLTKPFDAEHLVKIVRKVL 120 >gi|295108052|emb|CBL22005.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 155 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L YE ++ +G A +K++ +P ++L DI MP MD Sbjct: 1 MKYKILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIKMKP-DIILLDINMPRMD 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE+ R R+ L P ++F+T + ++KPF LR+L Sbjct: 60 GIEVCRLIRSKVLCP---ILFLTARVDEDDKINGLLSGGDDYITKPFSLREL 108 >gi|288925550|ref|ZP_06419483.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] gi|288337766|gb|EFC76119.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] Length = 865 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+DD RRF+ ++L + Y V NG A + +E ++++D++MP MDG++L Sbjct: 620 LLIVEDNDDFRRFIKESL-QEEYTVFEAGNGQEALELTAQESIDMIVSDVMMPVMDGLQL 678 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRLL 118 R + D+ I A D + K ++KPF++ L ++ +L Sbjct: 679 CHR---IKTDINFSHIPVILLTARTADEHVISGLKEGADEYITKPFNMEILKIKIRKLF 734 >gi|224826407|ref|ZP_03699509.1| CheA signal transduction histidine kinase [Lutiella nitroferrum 2002] gi|224601508|gb|EEG07689.1| CheA signal transduction histidine kinase [Lutiella nitroferrum 2002] Length = 737 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED R L L AGYEV + N+G A++ +++ F LL++DI MP +DG Sbjct: 620 RILVAEDSFTSRGLLKALLESAGYEVQTANDGLDAWNALKQAQFDLLVSDIEMPRLDGFA 679 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RA +L V+ +T + + NA ++ L+ V RLL Sbjct: 680 LTSKIRADRALTELPVVLVTALQSAEDRAHGLDVGANAYLVKSGLEQDTLLEAVKRLL 737 >gi|254422420|ref|ZP_05036138.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196189909|gb|EDX84873.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1023 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED + ++ L GY+ NNG A ++E+P+ L+L D+ MPEMDG+E Sbjct: 757 RILLTEDILLNQTVALQMLSSYGYQADVANNGKEAVAALKEQPYDLVLMDVQMPEMDGLE 816 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 A R + ++ +I A A+ D A + + KP RD+ Sbjct: 817 -ATRTIRAETTIEQPYIVAMTAHAMQGDRERCLGAGMNDYVRKPIRRRDV 865 >gi|189460601|ref|ZP_03009386.1| hypothetical protein BACCOP_01242 [Bacteroides coprocola DSM 17136] gi|189432677|gb|EDV01662.1| hypothetical protein BACCOP_01242 [Bacteroides coprocola DSM 17136] Length = 233 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD ++ + L + GYEV++ NG + RE ++++DI MP MDG Sbjct: 3 KLLLVEDDTNLSYIVHSGLQEIIGGYEVITAFNGKEGLEAWREHHPDIIISDIDMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAA 85 E+ R E D D ++F + + Sbjct: 63 FEMVRLIRETDGDTPILFASALTS 86 >gi|330957856|gb|EGH58116.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 444 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV + + E ++LTD+ MP M Sbjct: 1 MLNSVIVVDDEAPIRQAVEQWLSLSGFEVQVFARAEECLNSLPEHFPGVILTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R ELD DL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLHELDRDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 228 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A D+ E + LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T V L KPF +L+ V LL Sbjct: 62 VIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLL 116 >gi|330868793|gb|EGH03502.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 347 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV ++ E ++LTD+ MP M Sbjct: 1 MLNSVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAQLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 228 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L AL +AG+ V + +G A+ K+ E+ LLL D ++P Sbjct: 1 MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLPGTS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 GIELARR + D +L+ + I +A + + N ++ ++KPF R+L++ + Sbjct: 61 GIELARRIRQTD-NLRTLPIIMLSAKS--EEDNKITGLEIGADDYITKPFSTRELISRIK 117 Query: 116 RLL 118 LL Sbjct: 118 ALL 120 >gi|196248571|ref|ZP_03147272.1| response regulator receiver protein [Geobacillus sp. G11MC16] gi|196212296|gb|EDY07054.1| response regulator receiver protein [Geobacillus sp. G11MC16] Length = 118 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D + MR L + L KA + V NG A + R L++ DI MP M+GIE Sbjct: 4 ILVVDDANFMRVTLARILQKANHTVAGEAKNGKEAVELYRRLHPELVIMDITMPVMNGIE 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E+DP K++ + + + A + KPF D++ V RLL Sbjct: 64 AVRAIKEIDPGAKIIICSALGQQRMIVAAIEAGAADFIVKPFEESDVLEAVARLL 118 >gi|158424636|ref|YP_001525928.1| two component response regulator [Azorhizobium caulinodans ORS 571] gi|158331525|dbj|BAF89010.1| two component response regulator [Azorhizobium caulinodans ORS 571] Length = 446 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 55/97 (56%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 +DD+ +R ++AL AG V + +A D + ++++D+ MP +DG+EL RR Sbjct: 7 DDDEILRAANVQALMLAGLTVAPFGSAQAALDAIDPTFPGVVVSDVRMPRIDGLELFRRL 66 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++DP+L V+ ITG +A+ ++ L+KP+ Sbjct: 67 RKVDPELPVILITGHGDIAMAVEAMREGAYDFLAKPY 103 >gi|328946126|gb|EGG40271.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 244 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 18/120 (15%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED+ +R+ + + + G +V++ NG A+ K +E P +LLTDI MP+M+G Sbjct: 4 IMIVEDEYLVRQGIASLVNYEQFGMQVIAQAENGIEAWQKFQENPADILLTDINMPQMNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +ELA+ + P ++F+TG+ A+ L D L KPF RD V E+ Sbjct: 64 LELAKLVRDQAPKCHIVFLTGYDDFDYARMAIKLGADD-------YLLKPFS-RDDVEEM 115 >gi|300787746|ref|YP_003768037.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] gi|299797260|gb|ADJ47635.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] Length = 1361 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++L+A+D+ DMR +L++ L + Y V + +G A+ EP L+++D++MP +D Sbjct: 609 LGARVLVADDNADMRDYLVRLL-RDDYAVTAVRDGVEAFAAACAEPPELIISDVMMPRLD 667 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+ L R + V+ ++ A D A L KPF R+L+ V Sbjct: 668 GLGLLAELRGDPRTAAVPVLLLSARAGQEAAVDGLAAGADDYLVKPFSARELLARV 723 >gi|291278594|ref|YP_003495429.1| twitching motility two-component system response regulator PilH [Deferribacter desulfuricans SSM1] gi|290753296|dbj|BAI79673.1| twitching motility two-component system response regulator PilH [Deferribacter desulfuricans SSM1] Length = 119 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+AED R + KAL G+ VV+ +G +A ++V++ + +++ D++MP +G Sbjct: 2 KKILIAEDSSTEREIMKKALEAEGFTVVAVADGDAALEEVKKSEYDVIILDVIMPGKNGY 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ R + EL D V+ +T + + + KPF++ L++ V R L Sbjct: 62 QVCREIKRDELLKDTPVIIVTSKGQESDKFWGKRQGADEYIVKPFNVDLLISTVKRFL 119 >gi|260426423|ref|ZP_05780402.1| nitrogen assimilation regulatory protein [Citreicella sp. SE45] gi|260420915|gb|EEX14166.1| nitrogen assimilation regulatory protein [Citreicella sp. SE45] Length = 457 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + PDL V+ I+ + + + L KPF L DL+ + L Sbjct: 61 GLEMLPKIRQDRPDLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTAKALDN 120 Query: 121 KN 122 +N Sbjct: 121 RN 122 >gi|218885496|ref|YP_002434817.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756450|gb|ACL07349.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 762 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+ R + L + G+EV + NGA A D +R + F +L D+ M MDG+E Sbjct: 637 RILLAEDDEVSRLCARRLLEQMGHEVTTTANGAQALDALRAKRFDCVLMDVQMDVMDGVE 696 Query: 64 LARRATE-----LDPDLKVMFITGFA 84 R+ + LD + V+ +T +A Sbjct: 697 ATRQIRDGASGVLDARIPVIAMTAYA 722 >gi|218295640|ref|ZP_03496436.1| response regulator receiver protein [Thermus aquaticus Y51MC23] gi|218243799|gb|EED10326.1| response regulator receiver protein [Thermus aquaticus Y51MC23] Length = 118 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 1/114 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ + L L KAG+EV GA A + E PF LL+ D+++P++DG Sbjct: 2 RILVVDDEESILVPLEFLLKKAGHEVALARTGAEALRLLEEGPFDLLVLDLMLPDLDGFA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + +V+ +T A + A ++KPF ++DL+ EV RL Sbjct: 62 VLERLPQ-GRKPRVLVLTARGREADRAKALALGAEAFMAKPFGIQDLLAEVQRL 114 >gi|83646565|ref|YP_435000.1| chemotaxis protein histidine kinase-like kinase [Hahella chejuensis KCTC 2396] gi|83634608|gb|ABC30575.1| Chemotaxis protein histidine kinase and related kinase [Hahella chejuensis KCTC 2396] Length = 807 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+AED R L L AGY+ V+ N+G A++ +++ F L+++DI MP +DG Sbjct: 689 KRILIAEDSVTSRGLLKTILESAGYDAVTANDGVEAWEALKQGAFDLMVSDIEMPRLDGF 748 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSN-----APKNAKVLSKPFHLRDLVNEVN 115 L RA +L V+ +T +P+ A NA ++ F +L+ + Sbjct: 749 GLTAKVRADRRFAELPVVLVTALQ----SPEDKERGMEAGANAYIVKSGFDQANLLEIIR 804 Query: 116 RLL 118 +LL Sbjct: 805 QLL 807 >gi|117923941|ref|YP_864558.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117607697|gb|ABK43152.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 121 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I+ +D +R+ + L AGY VV +G A +K++ P +++TD+ MP MD Sbjct: 1 MAKTIMTVDDSSSVRQMVSMTLKSAGYTVVEGVDGQDALNKLKASPVDMVITDLNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L + L P K ++ +T + D A + KPF L+ + ++ Sbjct: 61 GITLIKNLRAL-PAFKFTPIVMLTTESQATRKQDGKAAGATGWIVKPFKPDQLLGVIKKV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] Length = 235 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+AEDD + L+ L GY+V+ ++G A D + PF L+L DI+MP Sbjct: 1 MMAHILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMPGKS 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G ++ R D D+ ++ +T + L D ++KPF + +L+ Sbjct: 61 GYDVCREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADD-------YITKPFGVHELLAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 IAAVL 118 >gi|300313044|ref|YP_003777136.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075829|gb|ADJ65228.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ ED D R L + L G V++ ++G A ++ + SL+LTD+ MP MDG Sbjct: 6 QKTVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDG 65 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ELAR ++ E + V I+ A ++ P+ + L KP + L+ V +LL Sbjct: 66 MELARYIKSDERFGHIPVALISANLPAA---NARVPEISAFLLKPCSVDHLLTTVTQLL 121 >gi|295094455|emb|CBK83546.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 112 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 1/111 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKIL+ ED++ + RF+ L GYE +G + DK F L++ D+++P ++ Sbjct: 1 MAQKILIVEDEEKIARFVELELLHEGYEAEKVFDGRTGLDKALSGGFDLVVLDVMLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E+ RR + + D+ V+ +T AV L+KPF + +L+ Sbjct: 61 GLEVLRRIRK-ESDVPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELL 110 >gi|283852635|ref|ZP_06369901.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] gi|283571926|gb|EFC19920.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] Length = 129 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 57/112 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++ L K L + G V++ N+G +A + + P ++L D+ MP MDG+E Sbjct: 6 RVLLVDDEESYVDTLKKRLSRRGLSVLTANSGEAALAILADNPMDVVLLDVKMPGMDGME 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R E P ++V+ +TG A V + L KP + DL ++ Sbjct: 66 TLTRIKEAHPRVEVIMLTGHANVDVAIRGMEQGAFDYLMKPAEMDDLYYKIQ 117 >gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402] gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402] Length = 235 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+D +R+ L + GYE V +G A + E F +L DI++P MD Sbjct: 1 MKEKILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++ +R E + V+ +T + + KPF R++V V +L Sbjct: 61 GIQVCKRLRE-EKSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAIL 117 >gi|218700689|ref|YP_002408318.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli IAI39] gi|331653655|ref|ZP_08354656.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M718] gi|218370675|emb|CAR18484.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli IAI39] gi|331048504|gb|EGI20580.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M718] Length = 461 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|166031682|ref|ZP_02234511.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC 27755] gi|166028659|gb|EDR47416.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC 27755] Length = 946 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 ++IL+ ED++ R + L + G+EV NGA A DK++ + ++L DI MP M Sbjct: 824 KRILVVEDNELNREIVKAVLEETGFEVEEAENGAVAVDKIKTAGALYYDVVLMDIQMPVM 883 Query: 60 DGIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 DG ++ L D DL + I +A A D A +A + L+KP ++ +L+ + Sbjct: 884 DGYMATKKIRNLEDSDLANIPIIALSANAFEEDRKASADAGMNGHLAKPVNVSELLKMLC 943 Query: 116 RLL 118 +L Sbjct: 944 KLF 946 >gi|160888827|ref|ZP_02069830.1| hypothetical protein BACUNI_01246 [Bacteroides uniformis ATCC 8492] gi|317479430|ref|ZP_07938563.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156861726|gb|EDO55157.1| hypothetical protein BACUNI_01246 [Bacteroides uniformis ATCC 8492] gi|316904396|gb|EFV26217.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 227 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 55/116 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL A+DD L + L K GYEV NG A D+ L+L DI MP ++G E Sbjct: 5 KILFADDDLKYSMLLKRFLEKEGYEVTYAGNGLIALDQFPLVKPDLVLLDINMPGLNGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +A+R E D + + F++ + A K L+KPF+ +L + T Sbjct: 65 VAKRIREADKHVLIFFLSDRSDKADRLQGFQLKANDYLAKPFYPEELTARIRERFT 120 >gi|220928585|ref|YP_002505494.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998913|gb|ACL75514.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 233 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 45/67 (67%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ R + L K GY +S ++GA+A +K+R + F L++ DI++P++ G E Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 64 LARRATE 70 + ++ E Sbjct: 66 VLQKIRE 72 >gi|94266261|ref|ZP_01289967.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453143|gb|EAT03611.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 461 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++D+R L L GYEV + NG A D + + F +++TD+ M DG + Sbjct: 3 RILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADGYD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ E D V+ IT F ++ ++ + KPF D+ V +L Sbjct: 63 VLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNIL 117 >gi|89054221|ref|YP_509672.1| two component, sigma54 specific, Fis family transcriptional regulator [Jannaschia sp. CCS1] gi|88863770|gb|ABD54647.1| two component, sigma54 specific, transcriptional regulator, Fis family [Jannaschia sp. CCS1] Length = 447 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 53/114 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +D+ D+R + L A V++C +A D + +L+TDI MP MDG L Sbjct: 6 VLFVDDEPDLRIAGEQTLSLADLPVIACARAEAALDHISPAFPGVLVTDIRMPGMDGTAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A DPDL V+ +TG V L S + KP+ LV + R L Sbjct: 66 MAEALRRDPDLPVILVTGHGDVDLAVHSMRLGAYDFIEKPYAPDRLVQVIRRAL 119 >gi|116750632|ref|YP_847319.1| response regulator receiver sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116699696|gb|ABK18884.1| response regulator receiver sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 394 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +M L AGYEV + A + V E L+L D+V+P++ G+E Sbjct: 6 KILVVDDEPEMLSLTSWILDSAGYEVFEASTAAECLESVHEHRPDLVLLDVVLPDLSGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNA----PKNAKVLSKPFHLRDLVNEVNRLLT 119 + RR + DPDL F+ + ++P A +++P +L+ V L+ Sbjct: 66 VCRR-IKGDPDLGRTFVVLMSGSLVSPSQQALGLDMGGDGYIARPVASAELLARVQSLVR 124 Query: 120 IK 121 IK Sbjct: 125 IK 126 >gi|330997905|ref|ZP_08321739.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569509|gb|EGG51279.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1370 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED D+ R FL++ L K + VV +G R E L+++D++MP MDG+ Sbjct: 1112 KKILVVEDHDEFRHFLVEQLQK-DFCVVEARDGVEGELAARTELPDLIVSDLMMPRMDGM 1170 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL RR L D++ I A + D + + +SKPF+ L + +L Sbjct: 1171 ELCRR---LKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQL 1227 Query: 118 LTIK 121 + K Sbjct: 1228 IEQK 1231 >gi|325919052|ref|ZP_08181113.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas gardneri ATCC 19865] gi|325550488|gb|EGD21281.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas gardneri ATCC 19865] Length = 464 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNN 124 >gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 900 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 46/89 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+AED+ + + L +AGY+V NG A D R F +L DI MPEMDG Sbjct: 758 QRILVAEDEYINKILIRTLLRQAGYQVTVVENGRKAVDAWRGGLFDCILMDIQMPEMDGY 817 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPD 91 E R E + D + + I A A+ D Sbjct: 818 EAVARIREAEGDNQHIPIIAMTAHAMPSD 846 >gi|299146872|ref|ZP_07039940.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23] gi|298517363|gb|EFI41244.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23] Length = 1377 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++RR++ L + + + C NG + + +E L+++D++MPEMDGI Sbjct: 1127 RVLIVEDDEEIRRYIRSEL-DSDFRIYECTNGREGLETILKEKPDLVISDVMMPEMDGIT 1185 Query: 64 LARR 67 L R+ Sbjct: 1186 LCRK 1189 >gi|291521396|emb|CBK79689.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 230 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A + +R+ F L+L DI +P+ +G Sbjct: 2 EQILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF +R L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIRALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|300770369|ref|ZP_07080248.1| two component system sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861] gi|300762845|gb|EFK59662.1| two component system sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861] Length = 1316 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+ ++ +L K L K Y ++ NGA A D + L+LTDI+MP MDG+ L Sbjct: 1063 ILLVEDNKEILAYLNKEL-KVSYTILRATNGAEALDILDSNNVQLVLTDIMMPVMDGLAL 1121 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +R L + V+F+T A+ + + KPF + L+ ++ T+KN Sbjct: 1122 CKRIKSDILYSHIPVIFLTAKNALDAKIEGIKTGADAYIEKPFSMEYLLVQIRN--TLKN 1179 >gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL J1-175] Length = 225 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ N+G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T +A ++KPF +L+ + LL N Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1566 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR + IK L YEV + ++G + + + E L+LTD++MP +DG E Sbjct: 397 RILLADDNADMRDY-IKRLLTDLYEVETVSDGIAVLEALARELPDLVLTDVMMPGLDGFE 455 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 L R +P+ + + I +A A P A L KPF R+L+ V L + Sbjct: 456 LLRE-LRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHLKM 514 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D R FL L +AG +VV+ + A + +LL DI MPE+DG L Sbjct: 1447 ILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVLAGSKPDVLLCDIGMPEIDGYML 1506 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLV 111 ++ + I A A D N K K +SKP +L+ Sbjct: 1507 IKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIKPEELL 1558 >gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199] gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199] Length = 1188 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAED+D R + K LG++G++V +G A + L+L D+ MP MDG+ Sbjct: 921 RRILLAEDNDVNRMLVSKVLGQSGHQVDEVADGQQALQAATRVTYDLILMDMQMPVMDGV 980 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 E R +L + I A AL + +A ++L+KP R L + RL Sbjct: 981 EATRAIRQLPGAAATVPIVALTADALPEHRHIYFDAGIDELLTKPVDWRLLDRTIARL 1038 >gi|57235034|ref|YP_180880.1| response regulator [Dehalococcoides ethenogenes 195] gi|57225482|gb|AAW40539.1| response regulator [Dehalococcoides ethenogenes 195] Length = 123 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D++ +R+ + L K Y++V NG A + RE+ F L+L DI+MP++DG+ Sbjct: 5 KILIADDEEHVRQLVCGILDK-DYQIVQAKNGEEAVKESREQDFDLILMDIMMPKLDGLA 63 Query: 64 LA--RRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 + + + ++ +TG LN + A ++KPF R+L ++N + Sbjct: 64 ACCMLKGDKQTSAIPIVMLTG-VGYELNKKLSQQLGADGYITKPFSPRELRTKINEFI 120 >gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED++ R ++ L G+E+V+ +NG A + + +E F L+L D MP MDG E Sbjct: 822 RILLAEDNEINRFMALELLKLRGHEIVTADNGKQALEALAKEAFDLVLMDAQMPVMDGEE 881 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 RR + + I A AL D A LSKP L +L + R+ Sbjct: 882 ATRRIRAGEAGNPRIHIVALTAYALRGDRERFLAVGMDDYLSKPIDLEELERVLARI 938 >gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 249 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q +LLAEDD +R L +AL GYEV + +G A P +LL D++MP +D Sbjct: 1 MTQTVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTPPDVLLLDVMMPGID 60 Query: 61 GIELAR 66 G+++ R Sbjct: 61 GLQVCR 66 >gi|330809063|ref|YP_004353525.1| response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377171|gb|AEA68521.1| putative response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 122 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ + L AGYEV+ +G A K+ L+++D+ MP MD Sbjct: 1 MSKTILIVDDSASIRQVVSITLKGAGYEVIEGVDGRDALTKLDGRKIHLIVSDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ + A +L P K V+ +T A+ A + KPF ++ V++L Sbjct: 61 GLSFIKAAKQL-PAYKFTPVIMLTTETGEAMKQQGQAVGAKAWMVKPFQPAQMLGAVSKL 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 234 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + R L A+ GY+V + +G A D + + L++ DI+MP GIE Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T + V D+ A L+KPF L++L+ Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGAD---DYLTKPFSLKELL 110 >gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] Length = 241 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E+ ++G AY + ++ +L D+++PEMD Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 >gi|256848291|ref|ZP_05553734.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714889|gb|EEU29867.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 222 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + R L A+ AGY V NG A D ++ + +++ DI+MP G+E Sbjct: 2 RILLAEDEAQLSRVLTMAMTNAGYHVDHAENGQRAVDLAKDNAYDVMIFDIMMPVKTGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + VM +T + V D+ A ++KPF L++L+ + L Sbjct: 62 ALKEIRATGDRTYVMMLTAMSEVDDKVTGLDAGAD---DYMTKPFSLKELLARLRSL 115 >gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] Length = 225 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+EV +GA+ ++ ++ F LL+ DI+MP+M+G++ Sbjct: 3 KILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62 Query: 64 LARRATE-LDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ + V+ +T + D+ A L KPF ++L + LL Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGAD---DYLVKPFSFQELEARIKALL 118 >gi|218780776|ref|YP_002432094.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218762160|gb|ACL04626.1| Response regulator receiver domain protein (CheY-like) [Desulfatibacillum alkenivorans AK-01] Length = 143 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q K+LL +D++D L + + G EV + +G +A + ++ D+VMP M Sbjct: 1 MSQGKVLLVDDNEDFLDILSERITSKGLEVETAESGTAALANPSLGSYDAVILDLVMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DGIE ++ +P+L+V+ +TG A++ ++ L KP ++ L+ ++ Sbjct: 61 DGIETLKKMLAANPELQVILMTGHASLEKGIEAVKLGAMDFLEKPAEIQSLMEKIKE 117 >gi|197124726|ref|YP_002136677.1| response regulator receiver modulated PilZ sensor protein [Anaeromyxobacter sp. K] gi|196174575|gb|ACG75548.1| response regulator receiver modulated PilZ sensor protein [Anaeromyxobacter sp. K] Length = 487 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 ++ L+ +DD +RR L ALG G+EV++ + + EE LL+TD+ MP MD Sbjct: 355 RRALVVDDDALLRRMLADALGGRGFEVLTAADATEGLRVLAEEVLALDLLVTDVHMPGMD 414 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103 G EL RR + + DL ++ +TG L P A VL K Sbjct: 415 GAELVRRIRTVGGEADLAIVAVTGRLEEGLEPRLVAAGADAVLEK 459 >gi|153005480|ref|YP_001379805.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029053|gb|ABS26821.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 532 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 42/80 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDDD R L + L AGY V NG A +L D+V+PE DG E+ Sbjct: 52 VLVIEDDDDAREALCEFLATAGYRVRPLRNGVEALAAAANSRPDAVLLDLVIPEPDGFEV 111 Query: 65 ARRATELDPDLKVMFITGFA 84 RR E DP + V+ ++ + Sbjct: 112 LRRIRERDPRVPVIVMSALS 131 >gi|115372718|ref|ZP_01460024.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|310823476|ref|YP_003955834.1| DigR protein [Stigmatella aurantiaca DW4/3-1] gi|115370199|gb|EAU69128.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309396548|gb|ADO74007.1| DigR protein [Stigmatella aurantiaca DW4/3-1] Length = 197 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 57/122 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ D +L L + GYEV++ + D +R F L++ D++MP+M Sbjct: 1 MQIRILVVDDEQDNCDYLKLVLTREGYEVITTTDPTQTVDILRGSDFHLVILDMMMPQMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + + D D+ V+ T + V S + + + KP + V L Sbjct: 61 GTEVLEQIRKYDTDIAVIVATAYPTVDTAVASLKAQASDYVKKPMEPDQFITAVRNALQK 120 Query: 121 KN 122 K Sbjct: 121 KG 122 >gi|49473740|ref|YP_031782.1| transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239243|emb|CAF25563.1| Transcriptional regulator [Bartonella quintana str. Toulouse] Length = 240 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MD Sbjct: 7 ITQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + D+ V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDIPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLLTIKN 122 V +L N Sbjct: 119 VKAILRRAN 127 >gi|326390458|ref|ZP_08212016.1| response regulator receiver protein [Thermoanaerobacter ethanolicus JW 200] gi|325993576|gb|EGD52010.1| response regulator receiver protein [Thermoanaerobacter ethanolicus JW 200] Length = 117 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +D MR L L K G+EVV NG A +K +E ++ DI MPEMDG Sbjct: 2 KKVLIVDDATFMRMILKTLLKKNGFEVVGEAENGVVAIEKYKELKPDIVTMDITMPEMDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ + DP+ KV+ I+ ++ + KPF ++ +++L Sbjct: 62 VQALKEIRAFDPNAKVVMISALGQELYVKEAVMFGAKGFIVKPFKEDYVIQTLSKL 117 >gi|308270677|emb|CBX27288.1| hypothetical protein N47_I07080 [uncultured Desulfobacterium sp.] Length = 699 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ IL+ EDD+ +R F +K L G++V++ +G A E +P L+LTD++MP + Sbjct: 574 SETILVVEDDEMVRNFAVKVLKGYGFKVLTAADGDEAIKISGEHRKPIHLMLTDVIMPGI 633 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ P++KV++++G+ + + KPF L +V +L Sbjct: 634 SSRDMEESLKSSRPEMKVLYMSGYTDNTIVHHGVLDSGKAFIGKPFSPDSLGRKVREML 692 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 38/62 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +D R L L G++V + NGA A ++++ L+++DI+MP MDG +L Sbjct: 14 ILIVDDREDNRYLLESLLKGNGHDVEAAANGAEALERIKAGEIELIVSDILMPVMDGFQL 73 Query: 65 AR 66 R Sbjct: 74 CR 75 >gi|302342039|ref|YP_003806568.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301638652|gb|ADK83974.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 127 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L +A AGY+V+S ++ A + + E ++ D+ +P M+ Sbjct: 1 MGKKILVVDDEQPILDLLGEAFTHAGYQVISTDSPEKALEILGREKIPVMFLDLNLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 G+EL RR ++P ++ TGF ++ D +KP L Sbjct: 61 GLELCRRIRAVNPMAQIFAFTGFVSLFELADCREAGFDDYFTKPVKL 107 >gi|294675051|ref|YP_003575667.1| DNA-binding response regulator [Prevotella ruminicola 23] gi|294473239|gb|ADE82628.1| DNA-binding response regulator [Prevotella ruminicola 23] Length = 228 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 53/111 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD L K L GYEV NG ++ L+L DI MP ++G E Sbjct: 5 RILLVDDDRQNSELLRKFLEVEGYEVDYAENGHKGWEAFTTTKPDLVLLDINMPLINGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 LAR+ E D D+ + F+T A K + KPF+ +L+ ++ Sbjct: 65 LARKIREQDRDVLIFFLTDRTEKADRLKGFDLKGNDYIPKPFYPEELIAKI 115 >gi|291515902|emb|CBK65112.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Alistipes shahii WAL 8301] Length = 516 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D+ ++ + + L + GYEV +CNNG A D E + L++ D +MP M G+E Sbjct: 3 KILWVDDEVELLKPHVLFLQQKGYEVDTCNNGYDAIDMASEGAYDLIILDEMMPGMTGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + E+ P V+ +T + + K A L KP VN LL+IK Sbjct: 63 TLPKIKEVRPTTPVIMVTKSEEENIMDKAVGSKIADYLIKP------VNPNQVLLSIK 114 >gi|260173484|ref|ZP_05759896.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|315921754|ref|ZP_07917994.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695629|gb|EFS32464.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1377 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++RR++ L + + + C NG + + +E L+++D++MPEMDGI Sbjct: 1127 RVLIVEDDEEIRRYIRSEL-DSDFRIYECTNGREGLETILKEKPDLVISDVMMPEMDGIT 1185 Query: 64 LARR 67 L R+ Sbjct: 1186 LCRK 1189 >gi|229824516|ref|ZP_04450585.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271] gi|229786117|gb|EEP22231.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271] Length = 237 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + R ++ AL GY+V +G A ++ + L++ DI+MP DGIE Sbjct: 2 RILLAEDEQQLARVVMTALAHEGYQVDWAKDGQQAVQLAQQTVYDLMILDIMMPVKDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + V+ +T A V D+ A L+KPF L++L+ Sbjct: 62 ALKEIRASGHTNHVIMLTAMAEVDDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|189466459|ref|ZP_03015244.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM 17393] gi|189434723|gb|EDV03708.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM 17393] Length = 1316 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 5/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +D+ ++ +L K L + ++VV+ NG A + + ++ SL+++D++MPEMD Sbjct: 1063 ISETILLVDDNIEILTYLQKELSR-NFKVVTAQNGREALEVLGKKNVSLVVSDVMMPEMD 1121 Query: 61 GIELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+EL E +P L V+ +T + + L KPF + L+ +N + Sbjct: 1122 GMELCTYIKE-NPSLCHLPVILLTAKSMTIYVEEGFQAGADDYLVKPFKVSTLIVRINNI 1180 Query: 118 LT 119 L+ Sbjct: 1181 LS 1182 >gi|160886384|ref|ZP_02067387.1| hypothetical protein BACOVA_04394 [Bacteroides ovatus ATCC 8483] gi|156108269|gb|EDO10014.1| hypothetical protein BACOVA_04394 [Bacteroides ovatus ATCC 8483] Length = 1377 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++RR++ L + + + C NG + + +E L+++D++MPEMDGI Sbjct: 1127 RVLIVEDDEEIRRYIRSEL-DSDFRIYECTNGREGLETILKEKPDLVISDVMMPEMDGIT 1185 Query: 64 LARR 67 L R+ Sbjct: 1186 LCRK 1189 >gi|281181133|dbj|BAI57463.1| conserved hypothetical protein [Escherichia coli SE15] Length = 452 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 18/136 (13%) Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 MN K I+ ED DD+R + L AGY V+SC + + ++ + ++LTD+ Sbjct: 1 MNNKFSEITIVYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSIPLIQSQANIIILTDVR 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPD-------------SNAPKNAKVLS 102 +P + G+EL E+D + V+ ITG V + D S++ K +++ Sbjct: 61 LPGISGLELLSYINEMDSKIPVILITGHGDVEMAVDAMRNGAFDFIEKPSSSDKLLSIIA 120 Query: 103 KPFHLRDLVNEVNRLL 118 + R LV E +LL Sbjct: 121 RAVEKRRLVLENQQLL 136 >gi|212691763|ref|ZP_03299891.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855] gi|212665664|gb|EEB26236.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855] Length = 1344 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 >gi|104781166|ref|YP_607664.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95110153|emb|CAK14860.1| putative sensor histidine kinase/response regulator hybrid [Pseudomonas entomophila L48] Length = 720 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 2/84 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 ++IL+ ED+ D+ F + L GY++ + A ++ + PF + +D+VMP M Sbjct: 603 RRILVVEDNPDVGSFTAQILRDHGYQISWATSAEQALTQIGDARVPFDAVFSDVVMPGMG 662 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+ LAR+ + PDL V+ +G++ Sbjct: 663 GLALARQLRQSHPDLPVILTSGYS 686 >gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 229 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D++ + L + L + GY+V ++G + +P+ LL+ D ++PE G++ Sbjct: 2 RILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + D + V+F+T V L KPF L++L+ V LL Sbjct: 62 LCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALL 116 >gi|21224677|ref|NP_630456.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3367770|emb|CAA20095.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 263 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 44/80 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ EDDD + R L L GY G++A P+ +LL D+ +P+MDG Sbjct: 32 RHRILVVEDDDTIGRHLETGLRGNGYAPTWSRTGSAALTLAARTPYDVLLLDLGLPDMDG 91 Query: 62 IELARRATELDPDLKVMFIT 81 +++AR + PDL ++ +T Sbjct: 92 LDVARAVRDQYPDLLIVILT 111 >gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 223 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + +++ L +AG++ VS +G R+ F +++ D +MP+MDG+ Sbjct: 2 RILIVEDDLEAAGVMVRGLTEAGHDCVSAADGEEGLKAARDGEFDVMIVDRMMPKMDGVT 61 Query: 64 LA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L RR + P V+F++ VA D L KP+ +L+ + L Sbjct: 62 LVETLRREGDRTP---VLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEAL 115 >gi|95929326|ref|ZP_01312069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95134442|gb|EAT16098.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 449 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 53/105 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL +DD MRR + L +AGY+V++ +G A R +L++TD+ M M Sbjct: 1 MSESVLLVDDDASMRRVIEFTLQEAGYQVLTAASGEEALPLFRHHQPALVVTDVRMEGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G ++ + P V+ IT ++ V + L+KPF Sbjct: 61 GYQVLEKVLAESPATLVIIITAYSTVEQAVGAMKSGAYDYLTKPF 105 >gi|325270180|ref|ZP_08136787.1| DNA-binding response regulator [Prevotella multiformis DSM 16608] gi|324987481|gb|EGC19457.1| DNA-binding response regulator [Prevotella multiformis DSM 16608] Length = 235 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KILL EDD+++ L + L GY+ C +G Y + + + + D++MP+ DG Sbjct: 4 NLKILLCEDDENLGTLLSEYLQAKGYQADLCPDGEVGYRAFLKNKYDICVLDVMMPKKDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ + + D+ ++F+T + ++KPF + +LV + +L Sbjct: 64 FTLAQEIRQANTDVPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|323703195|ref|ZP_08114848.1| response regulator receiver protein [Desulfotomaculum nigrificans DSM 574] gi|323531854|gb|EGB21740.1| response regulator receiver protein [Desulfotomaculum nigrificans DSM 574] Length = 122 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR + L K GYEV NGA A +E L+ DI MPEM Sbjct: 1 MGKRVLIVDDAAFMRMMIKNILTKNGYEVAGEAENGAVAVQLYKELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI+ + +DP+ ++ + + ++ + KPF ++ + R+L Sbjct: 61 DGIQGVKAIRAVDPNANIIMCSAMGQQTMVMEAIQAGAKDFIVKPFQQDRILQAIERVLA 120 >gi|320160319|ref|YP_004173543.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994172|dbj|BAJ62943.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 407 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD MR + K L G+E + NG A +K L++ D+ MPEMD Sbjct: 1 MPEKILVVDDDALMRLMVTKTLSTEGFEFLEAENGVQAVEKAIAHQPDLIIMDVNMPEMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E + R+ + + ++ +T + V + KPF +L VN LL Sbjct: 61 GYEACQRIRSNPITSAIPIILVTSLSTVEDKIKGFDSGADDYIPKPFDPIELTMRVNVLL 120 >gi|313159763|gb|EFR59119.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 516 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D+ ++ + + L + GYEV +CNNG A D E + L++ D +MP M G+E Sbjct: 3 KILWVDDEVELLKPHVLFLKQKGYEVDTCNNGYDAIDMASEGAYDLIILDEMMPGMTGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + E+ P V+ +T + + K A L KP VN LL+IK Sbjct: 63 TLPKIKEVRPTTPVIMVTKSEEENIMDKAVGSKIADYLIKP------VNPNQVLLSIK 114 >gi|288962255|ref|YP_003452550.1| two-component response regulator [Azospirillum sp. B510] gi|288914521|dbj|BAI76006.1| two-component response regulator [Azospirillum sp. B510] Length = 165 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 9/124 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D R + A +AGY+V NG +A + + L++TDI+MPE DG E+ Sbjct: 40 ILLVDDDPDFRGMVRIAFQRAGYDVREAENGHAALTILADHRVDLVVTDIIMPEADGYEV 99 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS------KPFHLRDLVNEVNRLL 118 E ++ +TG +L P A++L KP L++L+ E RL+ Sbjct: 100 ILGLKEHPSRPPLIAVTGG---SLRLRMELPGMARLLGADAAFEKPLDLKELMAEAGRLI 156 Query: 119 TIKN 122 + Sbjct: 157 AARR 160 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + R+ L + L K+GYEV + G A +K++EE ++L D++MP+M G E Sbjct: 574 KILVVDDNLNTRKMLCRHLTKSGYEVSETDRGKIALEKIKEELPEVILLDVMMPDMTGFE 633 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 + ++ + P ++++I A+ Sbjct: 634 VCQQLRK-TPQYELIYIIMLTALT 656 >gi|303245348|ref|ZP_07331632.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] gi|302493197|gb|EFL53059.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] Length = 144 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + +LL +D++++R L L K G V++ +G A D VR +P ++ + D+ MP ++G Sbjct: 4 KTVLLVDDEENLRFALSSWLTKQGLSVLTAASGEEAIDIVRGDPAVAVAVLDVNMPGLNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IE L P+L+ + +TG+ V + + LSKP + L V + L+ Sbjct: 64 IETLSALKALRPELESIIVTGYPTVEYALEGMRLGAVEYLSKPCDIHHLYEVVQKALS 121 >gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 234 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 12 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 72 VARRLRADGHTVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 126 >gi|289625657|ref|ZP_06458611.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 344 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV ++ E ++LTD+ MP M Sbjct: 1 MLNSVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAQLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|237799140|ref|ZP_04587601.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021995|gb|EGI02052.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 693 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLVVDDEPSVRMLVTEVITGLGYTCIEAADAQSGLQILKSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A E P L +FITG+A ++ + +VL+KPF L L VN L+ Sbjct: 624 GREMADAACEYRPGLPTLFITGYAKTSVLDGCHLRPCTQVLTKPFGLDALAGRVNGLI 681 >gi|224536005|ref|ZP_03676544.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM 14838] gi|224522372|gb|EEF91477.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM 14838] Length = 1219 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+DD+R ++ + + Y +++ NG ++ ++ ++++DI+MP MDGIEL Sbjct: 1072 ILVVEDNDDIREYIASSF-SSNYRIITAINGKEGLEQALKQIPDIIISDIMMPIMDGIEL 1130 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ E + V+ +T ++ + L+KPF + L + V+ LL Sbjct: 1131 CKQVKEDIRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLL 1186 >gi|170749494|ref|YP_001755754.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656016|gb|ACB25071.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 236 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY + + +GASA D +R P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALETEGYRIQTYTDGASALDGLRHSPPDLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIHKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368] Length = 235 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ + A+ L D L+KPF R+L+ Sbjct: 61 GIEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAVL 118 >gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] Length = 225 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+EV +GA+ ++ ++ F LL+ DI+MP+M+G++ Sbjct: 3 KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62 Query: 64 LARRATE-LDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ + V+ +T + D+ A L KPF ++L + LL Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGAD---DYLVKPFSFQELEARIKALL 118 >gi|94266226|ref|ZP_01289934.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453199|gb|EAT03660.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 462 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 55/119 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ +R L L G+ + +G SA ++ E L+L DI MP DG Sbjct: 5 QQRILVVDDEAGIRESLAGILADEGFAPLLAEDGESALARLENEAVDLVLLDIWMPGADG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ R EL P L V+ I+G + + + KP ++ +N L + Sbjct: 65 LEILSRLGELYPRLPVIMISGHGTIETAVQATRLGAYDFIEKPLSYDKVILAINNTLRL 123 >gi|39996066|ref|NP_952017.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982831|gb|AAR34290.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 467 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 61/116 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++I+L ++++ + R + L +GY V A ++ + + L+++DI MP MDG+ Sbjct: 8 KRIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKAGDWDLVVSDIKMPGMDGL 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ +R DP + V+ IT +A V + + +++KPF +L+ V L Sbjct: 68 EVLQRIKAKDPLVPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNAL 123 >gi|78222181|ref|YP_383928.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193436|gb|ABB31203.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 454 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ +D++++R L L K GY +G A E P+ ++ DI MP +D Sbjct: 1 MKQRVLVIDDEENLRHMLGAMLRKNGYHADEAADGEQALAMAGEHPYDFIICDIRMPVLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G+ RRA E ++ ++ + + +SKPF Sbjct: 61 GLGFLRRAQEAGIGGTIIMMSAYGTIDTALQCMKEGAYDYVSKPF 105 >gi|332667187|ref|YP_004449975.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332336001|gb|AEE53102.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1381 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 10/125 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ ED+ D+R ++ ++L YEV+ NG +K R+ ++++D++MPE+DG Sbjct: 1119 NPLVLVVEDNADIRTYIRRSL-YPDYEVIEAENGQEGLEKTRKLIPDIIISDVIMPELDG 1177 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-------HLRDLVN 112 EL R + E + V+ ++ ++ + ++KPF +R+L+N Sbjct: 1178 FELCRTVKQEEATAHIPVILLSARSSQMYQVEGYDTGADDYIAKPFSIDLLQARIRNLLN 1237 Query: 113 EVNRL 117 R+ Sbjct: 1238 NRERI 1242 >gi|209916101|gb|ACH90385.1| two-component osmosensing histidine kinase [Stemphylium vesicarium] Length = 1329 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG AY+ ++++ + +L D+ MP M G E Sbjct: 1119 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAYEHIQKKRYDCVLMDVQMPVMGGFE 1178 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1179 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1238 Query: 119 TI 120 T+ Sbjct: 1239 TV 1240 >gi|254513206|ref|ZP_05125271.1| sensory box histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221532210|gb|EEE35206.1| sensory box histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 820 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K L+ +D+ R L L G+EV NG +A +++ EPF +LL DI MP +DGIE Sbjct: 599 KALVVDDNAINRMILTDMLADIGFEVAEAENGYAALERLGVEPFDVLLLDISMPGIDGIE 658 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEV 114 + EL+ + + A A D A ++A+ +L KP L L +E+ Sbjct: 659 TLGKVRELNVSWRSLPAIAVTAHAAPKDHEAIRSAEFQGLLVKPVPLAALQSEL 712 >gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 233 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +DD +R + A+ KA Y + NG A +++P L++ DI MPEMDG Sbjct: 2 QNILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIGMPEMDGF 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ R + ++ ++F++ + + D ++KPF R+LV + Sbjct: 62 EVCREIRK-HSEVPILFLSARDEEIDRILGLEMGGDD-------YVTKPFSPRELVARIG 113 Query: 116 RLLTIKN 122 +L N Sbjct: 114 AILKRTN 120 >gi|307154154|ref|YP_003889538.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306984382|gb|ADN16263.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 888 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED +R + L KAGYEVV +G Y+K+R F +++D+ MP MDG+E Sbjct: 772 ILLTEDSIAVRTQEKRILEKAGYEVVVAVDGMDGYNKLRTRDFDAVISDVQMPNMDGLEF 831 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD----SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + P+ + + + ++A D ++A NA ++ F+ L+ + RL+ Sbjct: 832 VAKIRQ-HPEYRELPVILVTSLASEDDKRRGASAGANAYIVKDQFNQEMLLETLERLV 888 >gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] Length = 227 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 61/114 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ ED++ + RF+ L GYEV+ +G + D E L++ D+++P ++ Sbjct: 1 MSRKILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVMLPRLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E+ RR + ++ ++ +T AV ++KPF + +L+ + Sbjct: 61 GLEVLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARI 114 >gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 238 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 16 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 75 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 76 VARRLRAEGHTVPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 130 >gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R L +L AG++VV+ +G+ A+ + +E L++ D+++P+MDG Sbjct: 9 KLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPDMDGFT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T + ++KPF L ++V + +L Sbjct: 69 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAIL 123 >gi|310818542|ref|YP_003950900.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|309391614|gb|ADO69073.1| Response regulator [Stigmatella aurantiaca DW4/3-1] Length = 441 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ ++ L + AGYEV + G A + R P + + DI++P+M Sbjct: 1 MAPRILVVDDNPELLSLLTQLFEDAGYEVSGASRGKQAIESARTHPPAAAVLDILLPDMM 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 G LA P L ++FITG + K A KPF + L+ V +L+ Sbjct: 61 GYHLADTLRREQPQLPLLFITGVFKGGKHAIEARQKYAAAGYFEKPFEAQKLLEAVAKLV 120 >gi|309790587|ref|ZP_07685142.1| response regulator receiver modulated metal dependent phosphohydrolase [Oscillochloris trichoides DG6] gi|308227389|gb|EFO81062.1| response regulator receiver modulated metal dependent phosphohydrolase [Oscillochloris trichoides DG6] Length = 332 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD +R L++ L + Y ++ NG A DKV E L+L D+ MP +D Sbjct: 1 MSAKILVVDDDPAIRDILVRILQRENYTPITATNGLEALDKVVHESPDLILLDVTMPILD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GFEVCRR 67 >gi|298482943|ref|ZP_07001125.1| sensor histidine kinase/response regulator [Bacteroides sp. D22] gi|298270915|gb|EFI12494.1| sensor histidine kinase/response regulator [Bacteroides sp. D22] Length = 1377 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++RR++ L + + + C NG + + +E L+++D++MPEMDGI Sbjct: 1127 RVLIVEDDEEIRRYIRSEL-DSDFRIYECTNGREGLETILKEKPDLVISDVMMPEMDGIT 1185 Query: 64 LARR 67 L R+ Sbjct: 1186 LCRK 1189 >gi|294055452|ref|YP_003549110.1| PAS/PAC sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614785|gb|ADE54940.1| PAS/PAC sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 502 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++IL+A+D+ +R + K L + GY VV+ +GA A + L++T+I MP M Sbjct: 382 GRRILVADDEFFIRETIKKTLEEHGYSVVTAQDGAEALAVFASGADAVELVITNIDMPYM 441 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG L R +L P+++++ +G+ + + A + LSKP+ L +V ++L Sbjct: 442 DGPALCRALKKLSPEVRILVSSGYKQLDKLQEMKAVGVDEFLSKPYTAEKLSKKVAQIL 500 >gi|293371630|ref|ZP_06618041.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|294808690|ref|ZP_06767424.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292633327|gb|EFF51897.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|294444129|gb|EFG12862.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 456 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ +GI+L Sbjct: 4 ILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQNVDLILSDLRLPDHEGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 64 LKWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYIAKPVNPEELLKKISECL 117 >gi|293372768|ref|ZP_06619149.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292632277|gb|EFF50874.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1377 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++RR++ L + + + C NG + + +E L+++D++MPEMDGI Sbjct: 1127 RVLIVEDDEEIRRYIRSEL-DSDFRIYECTNGREGLETILKEKPDLVISDVMMPEMDGIT 1185 Query: 64 LARR 67 L R+ Sbjct: 1186 LCRK 1189 >gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 249 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ EDD +R L ALG AGY+V S G +V LL+ D+++P++D Sbjct: 9 LTHRILVVEDDPGIRLLLESALGLAGYQVSSAATGRDGLLEVERFRPDLLVLDVMLPDLD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ R + ++F+T V + KPF + +++ + +L Sbjct: 69 GFEITRNLRGVGVRTPILFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAIL 126 >gi|237723256|ref|ZP_04553737.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447778|gb|EEO53569.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1377 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++RR++ L + + + C NG + + +E L+++D++MPEMDGI Sbjct: 1127 RVLIVEDDEEIRRYIRSEL-DSDFRIYECTNGREGLETILKEKPDLVISDVMMPEMDGIT 1185 Query: 64 LARR 67 L R+ Sbjct: 1186 LCRK 1189 >gi|113868353|ref|YP_726842.1| response regulator [Ralstonia eutropha H16] gi|113527129|emb|CAJ93474.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 60/107 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + L +ALG+AG+ V ++G SA + + + ++LL+ D+ +P +DG+E Sbjct: 2 RILLAEDNVMLANSLSQALGQAGFTVDCMHDGRSADNLLSTQDYALLILDLGLPGLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RR + L V+ +T +V L+KPF L +L Sbjct: 62 VLRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSEL 108 >gi|77460771|ref|YP_350278.1| response regulator receiver domain-containing protein [Pseudomonas fluorescens Pf0-1] gi|77384774|gb|ABA76287.1| putative two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 451 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +D++ + L + L Y+V+ +GA A + + ++P +L+++D MP MDG Sbjct: 14 KVLLVDDEEPILNSLRRLLRGQPYDVLLATSGAQALEILEQQPVNLVMSDARMPNMDGAT 73 Query: 64 LARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L R EL P + +TG+A A+ N + + +SKP+ N+ LLT++ Sbjct: 74 LLARVHELYPATARIMLTGYAEPSAIIKAINEGQIERYISKPW------NDEEMLLTLRQ 127 >gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 1358 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++LA+D+ DMR ++ + L ++VV+ +G A+ +R++ L+LTD++MP++DG Sbjct: 610 RVVLADDNADMRDYIHRLLND-DFDVVAVTDGEQAWQAIRDQLPELVLTDVMMPKLDGFG 668 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R D L V+ ++ A ++ L KPF+ R+L+ +V L I Sbjct: 669 LLERLRGDDATRRLPVIMLSARAGEEARVEALDAGVDDYLVKPFNARELLAKVRSQLQI 727 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LLAED L GY+ +G +A + R F L++ D+ MP+MDG Sbjct: 1235 RRVLLAEDHPANALVATTLLEDYGYDCEVVPDGGTAIARWRTSAFDLVMMDVQMPDMDGY 1294 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 E R R E+ I A AL D A + ++KPF +L ++ L Sbjct: 1295 EATRQIRRIEVQETRPRTPILAMTAHALKGDRETCLQAGMDDYIAKPFDAAELEQKLRAL 1354 Query: 118 L 118 L Sbjct: 1355 L 1355 >gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] Length = 225 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ F+ + L + G+EV +GA+ ++ ++ F LL+ DI+MP+M+G++ Sbjct: 3 KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62 Query: 64 LARRATE-LDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ + V+ +T + D+ A L KPF ++L + LL Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGAD---DYLVKPFSFQELEARIKALL 118 >gi|296445549|ref|ZP_06887505.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296256954|gb|EFH04025.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 753 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 + IL+ EDD +R L + GY V+ + A+A ++ LL TD+VMP + Sbjct: 498 QETILVVEDDARVRALTADTLKELGYSVLEADGAAAALRQLDMNRNVDLLFTDVVMPGAN 557 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA A P L+++F TG+ A+ + +++ KP+ + L +V LL Sbjct: 558 GRHLADEARRRRPQLQILFTTGYTRNAVVHNGVLDPGVELIVKPYSIDRLARKVRDLL 615 >gi|270294949|ref|ZP_06201150.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274196|gb|EFA20057.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1357 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED+D +R L + K YEV++ +GA VR E +++++D+VMP M G Sbjct: 1093 DAKILIVEDNDSIRDML-AGIFKPFYEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSG 1151 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ ++ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1152 TELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1210 >gi|253988926|ref|YP_003040282.1| two-component response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780376|emb|CAQ83537.1| two-component response regulator [Photorhabdus asymbiotica] Length = 222 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KAL G+ V ++G A ++ E ++LL+ D+ +P +DG+ Sbjct: 2 RLLLVEDHPELLHWLQKALSSTGFAVDVASDGIVADQLLQTENYALLILDVSLPRLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + +L V+ +T A VA L+KPF L++L + LL Sbjct: 62 LLVRLRKRGQNLPVLLLTAKADVADRVKGLNSGADDYLTKPFDLQELEARIRALL 116 >gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1416 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR + +K L YEV S +G +A D R L+LTD++MP +DG Sbjct: 644 RILLADDNSDMRDY-VKRLLSQQYEVESVADGLAALDSARGRVPDLVLTDVMMPGLDGFG 702 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + RA + ++ ++ A + L KPF R+L+ V L + Sbjct: 703 LLQELRANPQTKKVPIILLSARAGEEARVEGLEAGADDYLIKPFSARELLARVEAALKM 761 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DDDD R F L +AG +V++ + A + E +LL+DI MPE DG Sbjct: 1294 QILVVDDDDDTREFHTFVLEQAGAKVMAVASAKEALQALAESEPDILLSDIGMPETDGYM 1353 Query: 64 LAR--RATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R RA +L + + +T +A + A + LSKP +LV + L+ Sbjct: 1354 LMRQIRALQLKQAKQIPAIALTAYAGEINQQQAIASGFQRHLSKPVEPDELVKAIATLI 1412 >gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] Length = 213 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG-YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L G +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTRGEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +KV+ ++ F+ Sbjct: 61 MDGIEATKRLKQYDETIKVLILSSFS 86 >gi|160888601|ref|ZP_02069604.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492] gi|156861915|gb|EDO55346.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492] Length = 1343 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED+D +R L + K YEV++ +GA VR E +++++D+VMP M G Sbjct: 1079 DAKILIVEDNDSIRDML-AGIFKPFYEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSG 1137 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ ++ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1138 TELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1196 >gi|124002835|ref|ZP_01687687.1| PAS [Microscilla marina ATCC 23134] gi|123992063|gb|EAY31450.1| PAS [Microscilla marina ATCC 23134] Length = 126 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+AED ++ K L YE+ S +G KV +E + ++L DI MP++D Sbjct: 1 MGKKILIAEDSSVIQNIATKVLSFQRYEIDSAKDGKQVMAKVAKENYDVILMDINMPKLD 60 Query: 61 GIELARRATELDPDLK----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+E +R+ L+ + K ++ ITG A D +A + KP LV +V Sbjct: 61 GMECSRQIRALEDEQKAKTPIIAITGNAKNYSPEDFSAAGINDFMPKPIDFDLLVQKVKE 120 Query: 117 L 117 Sbjct: 121 F 121 >gi|158522137|ref|YP_001530007.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158510963|gb|ABW67930.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---------DKVREEPFSLLLTDI 54 ++L+AEDD +MR+ L L +GY+VV C +G + D+ +E L+++D+ Sbjct: 15 RVLVAEDDYEMRKLLAGTLKDSGYDVVECPDGMAMLTHLAAFLLPDEFSQEKIDLIISDV 74 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 MP + G+E+ ++ IT F + + A +L KPF + DL+ ++ Sbjct: 75 RMPGITGMEVLEGKPRHRAFPPMILITAFGDDQTHAMAAQFGAAAMLDKPFDMDDLLGKM 134 Query: 115 NRLL 118 +L Sbjct: 135 TEIL 138 >gi|148550825|ref|YP_001260264.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148503244|gb|ABQ71497.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 762 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELD 72 +R ++ L + GY V+ +G D + + +LLLTDI +P M+G +A+ Sbjct: 639 VRTLVVDQLRELGYHVLQAADGPEGVDILNSSQVINLLLTDIGLPGMNGRLVAQAGRTCR 698 Query: 73 PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 PDL ++F+TG+A A +++KPF + L V +T Sbjct: 699 PDLPILFMTGYAETATQAAGFLEPGMGLITKPFEMEVLAQRVRETMT 745 >gi|78186232|ref|YP_374275.1| two component Fis family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166134|gb|ABB23232.1| two component transcriptional regulator, Fis family [Chlorobium luteolum DSM 273] Length = 452 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 54/111 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ + L K GY V++ + A A EE L+L+D MP M Sbjct: 1 MGHTILVVEDERVQLESIAGFLLKQGYRVMTADRPAGALVIAGEEAVDLVLSDFRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+EL +L+PD+ V+ +T F +V ++ ++KP L L+ Sbjct: 61 GVELLAGLKQLNPDIDVIIMTAFGSVESATEAMKLGAIDYITKPVDLHRLI 111 >gi|26250852|ref|NP_756892.1| putative c4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli CFT073] gi|91213591|ref|YP_543577.1| putative c4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli UTI89] gi|117626334|ref|YP_859657.1| two component response regulator [Escherichia coli APEC O1] gi|215489399|ref|YP_002331830.1| predicted response regulator in two-component system [Escherichia coli O127:H6 str. E2348/69] gi|218692343|ref|YP_002400555.1| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli ED1a] gi|227886925|ref|ZP_04004730.1| c4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli 83972] gi|237703624|ref|ZP_04534105.1| two component response regulator [Escherichia sp. 3_2_53FAA] gi|300992981|ref|ZP_07180136.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 45-1] gi|301047018|ref|ZP_07194127.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 185-1] gi|306815827|ref|ZP_07449972.1| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli NC101] gi|312965657|ref|ZP_07779886.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Escherichia coli 2362-75] gi|331660628|ref|ZP_08361560.1| putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein [Escherichia coli TA206] gi|26111283|gb|AAN83466.1|AE016770_266 Putative c4-dicarboxylate transport transcriptional Regulatory protein [Escherichia coli CFT073] gi|91075165|gb|ABE10046.1| putative c4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli UTI89] gi|115515458|gb|ABJ03533.1| two component response regulator [Escherichia coli APEC O1] gi|215267471|emb|CAS11925.1| predicted response regulator in two-component system [Escherichia coli O127:H6 str. E2348/69] gi|218429907|emb|CAR10883.2| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli ED1a] gi|222035774|emb|CAP78519.1| c4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli LF82] gi|226901536|gb|EEH87795.1| two component response regulator [Escherichia sp. 3_2_53FAA] gi|227836066|gb|EEJ46532.1| c4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli 83972] gi|294489933|gb|ADE88689.1| sigma-54 dependent DNA-binding response regulator, Fis family [Escherichia coli IHE3034] gi|300301063|gb|EFJ57448.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 185-1] gi|300406755|gb|EFJ90293.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 45-1] gi|305850802|gb|EFM51258.1| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli NC101] gi|307556213|gb|ADN48988.1| putative c4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli ABU 83972] gi|307629116|gb|ADN73420.1| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli UM146] gi|312289631|gb|EFR17522.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Escherichia coli 2362-75] gi|312948639|gb|ADR29466.1| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia coli O83:H1 str. NRG 857C] gi|315287840|gb|EFU47242.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 110-3] gi|315291539|gb|EFU50899.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 153-1] gi|315297533|gb|EFU56812.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 16-3] gi|320193421|gb|EFW68058.1| Two-component response regulator [Escherichia coli WV_060327] gi|323190075|gb|EFZ75353.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Escherichia coli RN587/1] gi|323950389|gb|EGB46270.1| sigma-54 interaction domain-containing protein [Escherichia coli H252] gi|323954471|gb|EGB50255.1| sigma-54 interaction domain-containing protein [Escherichia coli H263] gi|324007786|gb|EGB77005.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia coli MS 57-2] gi|331051670|gb|EGI23709.1| putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein [Escherichia coli TA206] Length = 452 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 18/136 (13%) Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 MN K I+ ED DD+R + L AGY V+SC + + ++ + ++LTD+ Sbjct: 1 MNNKSSEITIVYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSIPLIQSQANIIILTDVR 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPD-------------SNAPKNAKVLS 102 +P + G+EL E+D + V+ ITG V + D S++ K +++ Sbjct: 61 LPGISGLELLSYINEMDSKIPVILITGHGDVEMAVDAMRNGAFDFIEKPSSSDKLLSIIA 120 Query: 103 KPFHLRDLVNEVNRLL 118 + R LV E +LL Sbjct: 121 RAVEKRRLVLENQQLL 136 >gi|317477946|ref|ZP_07937129.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316905860|gb|EFV27631.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1357 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED+D +R L + K YEV++ +GA VR E +++++D+VMP M G Sbjct: 1093 DAKILIVEDNDSIRDML-AGIFKPFYEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSG 1151 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ ++ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1152 TELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1210 >gi|237753132|ref|ZP_04583612.1| DNA-binding response regulator [Helicobacter winghamensis ATCC BAA-430] gi|229375399|gb|EEO25490.1| DNA-binding response regulator [Helicobacter winghamensis ATCC BAA-430] Length = 222 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ EDD +M++ L L ++G EV++ ++ +A + ++++ F L + DI++PEMDG+ Sbjct: 3 KILIVEDDLEMQKLLQDYLQQSGMEVITTDSPNTAIEWIKQQKGFHLAVLDIMLPEMDGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R E+ D+ ++ + ++ L+K + +LV +N LL Sbjct: 63 ELCERIREIS-DIPIIMSSARGDISSKMLGFKNGADDYLAKSYEPLELVARINALL 117 >gi|167759328|ref|ZP_02431455.1| hypothetical protein CLOSCI_01675 [Clostridium scindens ATCC 35704] gi|167662885|gb|EDS07015.1| hypothetical protein CLOSCI_01675 [Clostridium scindens ATCC 35704] Length = 515 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ +D+ MR+ + + + V + NG +A D ++ +++LTDI MP D Sbjct: 4 KILVVDDEATMRKGITNFMNWDSLDCQVVGAVENGLAAMDFLKNSDVNIVLTDIKMPGAD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ELAR + P +KV+ +TG+A + + KP + RDL + V + Sbjct: 64 GLELARFIHDEYPQIKVIILTGYADFEYAKTAIKYDVVSFIVKPTNKRDLFDAVKK 119 >gi|115372867|ref|ZP_01460172.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] gi|115370134|gb|EAU69064.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] Length = 466 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ ++ L + AGYEV + G A + R P + + DI++P+M Sbjct: 26 MAPRILVVDDNPELLSLLTQLFEDAGYEVSGASRGKQAIESARTHPPAAAVLDILLPDMM 85 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 G LA P L ++FITG + K A KPF + L+ V +L+ Sbjct: 86 GYHLADTLRREQPQLPLLFITGVFKGGKHAIEARQKYAAAGYFEKPFEAQKLLEAVAKLV 145 >gi|313157579|gb|EFR56995.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 849 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ +R +L AL + Y V + NG AY + E L+LTDIVMP M GIEL Sbjct: 579 ILVAEDNTALRDYLRSAL-ENRYNVSTARNGEEAYCQAINEQPDLVLTDIVMPGMSGIEL 637 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R+ E + V+ +T ++KPF L L + ++ L+ +N Sbjct: 638 CRKIKENSRTSAIGVILLTAHNLQNYEVSGYRVGADAYVAKPFSLEVLFSRIDNLVARQN 697 >gi|302871452|ref|YP_003840088.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor obsidiansis OB47] gi|302574311|gb|ADL42102.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor obsidiansis OB47] Length = 509 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 14/125 (11%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL ED+ MR+ +IK + G+ G+E+ NG A + ++ E +++TDI MP MD Sbjct: 3 KILLVEDEIFMRKGIIKLIDWGRLGFEIAYEAGNGQEALEILKSEKVDVIITDIKMPVMD 62 Query: 61 GIELARRATE-LDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIEL +R +E + ++ I+G FA A+ N L KP +L+ + Sbjct: 63 GIELIKRVSEKFENKPPIIIISGYNEFEFAKAAIKYGVN-----DYLLKPIDENELIQTL 117 Query: 115 NRLLT 119 ++ T Sbjct: 118 EKIKT 122 >gi|282899811|ref|ZP_06307773.1| Multi-sensor Hybrid Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195293|gb|EFA70228.1| Multi-sensor Hybrid Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 1024 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 66/117 (56%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +R L Y+ ++ +NG A Y + +++ S++L DI+MP++DG Sbjct: 898 ILIVDDEPQIRDVTRMILETHNYDTLTASNGMEAIAIYGQYKQD-ISVVLMDIMMPKIDG 956 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I + +++P +K++ +G + + P+S K VL KP+ DL++ ++ ++ Sbjct: 957 IATIQAMKKINPLVKIIASSGISTIEAIPESANTKVQGVLLKPYSASDLLSSMSMVI 1013 >gi|124005512|ref|ZP_01690352.1| response regulator [Microscilla marina ATCC 23134] gi|123988946|gb|EAY28539.1| response regulator [Microscilla marina ATCC 23134] Length = 518 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL A+D+ DM + I L K GY++ N+GA A DK +EE F ++ D MP + G+E+ Sbjct: 6 ILWADDEIDMLKPHIMFLDKKGYDITPVNSGADALDKFQEENFDVIFLDENMPGISGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P++ V+ IT + ++ K L KP + ++ V ++L Sbjct: 66 LAQIKSEKPNVPVVMITKSEEEHIMEEAIGSKIDDYLIKPLNPNQILLSVKKIL 119 >gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [marine gamma proteobacterium HTCC2207] gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [marine gamma proteobacterium HTCC2207] Length = 219 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD + L KAL + Y V + G A +R E + + D+ +P+MDGIE+ Sbjct: 3 ILLVEDDTSLAAALCKALRQKNYAVNTVATGREALHVIRTEKPDMTILDLGLPDMDGIEV 62 Query: 65 ARRATELDPDLKVMFIT---GFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 ++A P+++++ +T G DS A L+KPF + +L+ Sbjct: 63 LKKARHSQPEIQILILTARSGTEEKITGLDSGAD---DYLAKPFEVDELL 109 >gi|83720806|ref|YP_441172.1| response regulator [Burkholderia thailandensis E264] gi|167579925|ref|ZP_02372799.1| response regulator [Burkholderia thailandensis TXDOH] gi|257140165|ref|ZP_05588427.1| response regulator [Burkholderia thailandensis E264] gi|83654631|gb|ABC38694.1| response regulator [Burkholderia thailandensis E264] Length = 484 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV+ +GA+A D + L+++D+ MP M G E Sbjct: 47 ILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAAGEADLIISDMRMPGMTGAEF 106 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 107 LARAQALHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVKQAL 161 >gi|325109605|ref|YP_004270673.1| response regulator receiver protein [Planctomyces brasiliensis DSM 5305] gi|324969873|gb|ADY60651.1| response regulator receiver protein [Planctomyces brasiliensis DSM 5305] Length = 127 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +I++A+D+ DMR +L L G+EV++ NG + R E L+++D+ MP +DG+ Sbjct: 2 RIIVADDEPDMREYLQTMLTYLGHEVLAVATNGEELIECCRRETPDLVISDLKMPGIDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E ++ + D+ V+ I+ +A + + + L+KPF+ ++L +N + Sbjct: 62 EAIQQIWKFA-DVAVLMISAYACPENIGEESGRPEVRYLNKPFNRQELRTALNSI 115 >gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] Length = 248 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV + G +A +E +++ DI++P+ DG+E Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P++ V+F+T AV ++KPF L ++V + LL Sbjct: 78 VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALL 132 >gi|171058281|ref|YP_001790630.1| response regulator receiver protein [Leptothrix cholodnii SP-6] gi|170775726|gb|ACB33865.1| response regulator receiver protein [Leptothrix cholodnii SP-6] Length = 120 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL +D MR+ + L AGY VV +G A++K F L+LTD MP +DGI Sbjct: 2 HSILAVDDSASMRQMVSFTLKSAGYNVVEAVDGQDAWEKAGSRSFDLVLTDQNMPRLDGI 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R R T + ++ +T ++ + + L KPF L+ + +++ Sbjct: 62 GLTRKLRETSQFKNTPILILTTESSDQMKQAGRSAGATGWLVKPFDPTKLIEVIKKVV 119 >gi|188579428|ref|YP_001922873.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342926|gb|ACB78338.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1381 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + ++ + ++ + LL+TD+ +P M+ Sbjct: 1261 ETVLIVDDEPSIRMLVTEVLEDLGYTAIEASDAVAGLKVLQSDVRIDLLVTDVGLPGGMN 1320 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A A P+LKV+FITG+A A + + VL+KPF + L + + L++ Sbjct: 1321 GRQMADAARVSRPNLKVLFITGYAENAAVGNGHLEPGMAVLTKPFVMEALASRIKDLIS 1379 >gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +ILL ED+ + RFL L G++V C +G + EP+ L+L D+++P ++ Sbjct: 1 MNGRILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPSLN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ R RA + P ++ IT +V + D+ A + KPF + +L+ + Sbjct: 61 GMEVCRRIRAAKSTP---IIMITARDSVFDRVMGLDNGAD---DYIVKPFAIEELLARIR 114 Query: 116 RLL 118 L Sbjct: 115 ALF 117 >gi|119946428|ref|YP_944108.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119865032|gb|ABM04509.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] Length = 246 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 6/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ D+R + L +AGY V+ +G + + ++++ FSLL+ D+ + DG+ L Sbjct: 9 ILIVDDEVDVRILVSDVLNQAGYPCVAVADGNTMFGEMKKALFSLLIIDLRLKNEDGLVL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-----LT 119 AR E + ++ ++ +TG + S L KPF++R+LV VN L +T Sbjct: 69 ARSVRE-NSNIPILMLTGKGSETDRILSLEIAADDFLMKPFNIRELVARVNALQRRAVMT 127 Query: 120 IKN 122 I N Sbjct: 128 INN 130 >gi|114566146|ref|YP_753300.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337081|gb|ABI67929.1| response regulator receiver modulated diguanylate cyclase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 301 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 5/83 (6%) Query: 4 KILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDG 61 ++L+A DDD + R ++KAL K GYEV+ +G A+D ++E+ L+L D +MP +DG Sbjct: 2 RVLIA-DDDLISRTVVKALLSKWGYEVLEAGDGIQAWDILKEKDSPQLVLLDWMMPGIDG 60 Query: 62 IELARRATELDPDL--KVMFITG 82 +EL RR +LD + ++ +TG Sbjct: 61 LELCRRLRQLDNNTYHYIILLTG 83 >gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20] Length = 248 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV + G +A +E +++ DI++P+ DG+E Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P++ V+F+T AV ++KPF L ++V + LL Sbjct: 78 VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALL 132 >gi|302343682|ref|YP_003808211.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640295|gb|ADK85617.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 934 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 ++ I++ +D+ +RRF + L GY V+ +G A D K R P L++ D+ MP M Sbjct: 808 HETIMVVDDEPLLRRFARQHLEAVGYGVLEAASGEDALDALKRRAYPPHLVILDLGMPGM 867 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ A+ P L+++ +G+A + S L+KPF D++ V R+L Sbjct: 868 GGLRCAKELLARWPGLRILIASGYADDSQVRQSLDHGAIDFLAKPFRRVDMLGAVRRML 926 >gi|291560891|emb|CBL39691.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 10/114 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L YE ++ +G A +K++ +P ++L DI MP MD Sbjct: 1 MKYKILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIKMKP-DIILLDINMPRMD 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNA--PKNAKVLSKPFHLRDL 110 GIE+ R R+ L P ++F+T A V + N ++KPF LR+L Sbjct: 60 GIEVCRLIRSKVLCP---ILFLT--ARVDEDDKINGLLSGGDDYITKPFSLREL 108 >gi|307727189|ref|YP_003910402.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307587714|gb|ADN61111.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 720 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 20/130 (15%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D R ++ LG G++ V G K E SL++TDIVM +MDG+ Sbjct: 510 RKVLVIDDVAMNRALMVDFLGHLGFQTVEATGGRQGLAKTLSERPSLIVTDIVMADMDGL 569 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----------VLSKPFHLRDLV 111 E RR + I GFA V + S +P A L KP L+ Sbjct: 570 ETTRRLRQ---------IPGFAQVPVIATSASPSGADEQRSLQAGANAFLPKPIDFDKLL 620 Query: 112 NEVNRLLTIK 121 ++ RLL ++ Sbjct: 621 AQIARLLDLE 630 >gi|323487210|ref|ZP_08092513.1| two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323399436|gb|EGA91831.1| two component transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 529 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALG---KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 ++++A+D+ + R L++AL G EV + NG A V +L+TDI MP Sbjct: 3 RVIIADDEKLICR-LVQALADWDSLGMEVAGTAENGLEALQLVEALEPDILITDIRMPGC 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG+EL RRA EL P L+V+ I+G+A + L KP +L++ + ++ Sbjct: 62 DGLELIRRAKELRPQLEVVIISGYAHFEYAQSAIQFGVGNYLLKPIKKEELMDTLRKM 119 >gi|315126944|ref|YP_004068947.1| two-component member protein [Pseudoalteromonas sp. SM9913] gi|315015458|gb|ADT68796.1| putative two-component member protein [Pseudoalteromonas sp. SM9913] Length = 1103 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D + L L +AG++V NNG A D + F ++L DI MP+ DGI Sbjct: 783 KILVVDDIEQNIELLTIMLSQAGHQVSKANNGFEAIDMFNQHRFDIILMDIHMPKCDGIS 842 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R+ E LK I A L D K A + +KP + L E+ R+L Sbjct: 843 ATASIRSLEQQKKLKHTPIIALTASVLQQDKLTAKQAGMNGFTTKPVDINQLNQEIARVL 902 >gi|297162453|gb|ADI12165.1| Signal transduction histidine kinase-like protein [Streptomyces bingchenggensis BCW-1] Length = 1154 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ D+R +L + LG +EV+ +G +A D P L+LTD++MP +DG L Sbjct: 649 LLVADDNADVRDYLKELLG-PDHEVLLVGDGRAALDTALSHPVDLVLTDVMMPRLDGFAL 707 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R RA L ++ +T A L+KPF R L+ V Sbjct: 708 VRALRADPRTTRLPIILLTARAGEEATVQGLRAGADDYLAKPFSARQLLARV 759 >gi|300088232|ref|YP_003758754.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527965|gb|ADJ26433.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1149 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + + L + G+EV C A DK+ + + +++ DI MP M GIE Sbjct: 1033 KILVVDDERSVGALIRVILTRQGHEVQECYGPQEALDKLVDNTYDIVILDIRMPGMSGIE 1092 Query: 64 LARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L P + +V+FITG + N +SKPF +L +VN LL Sbjct: 1093 LLDEIKVRWPKMVSRVLFITGDTSDLSTRTYLNTHNIPYISKPFERHELEEKVNALL 1149 >gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 226 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 51/103 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ R L ALG AGY V +G A+ EP+ +++ D+ +P++DG+ Sbjct: 2 RVLLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGLPKIDGVS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 + R V+ +T A + L+KPFH Sbjct: 62 VLERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFH 104 >gi|224370951|ref|YP_002605115.1| cold-shock inducible two-component sensory box histidine kinase /regulatory protein (Ntr family protein) [Desulfobacterium autotrophicum HRM2] gi|223693668|gb|ACN16951.1| cold-shock inducible two-component sensory box histidine kinase /regulatory protein (Ntr family protein) [Desulfobacterium autotrophicum HRM2] Length = 1036 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 +KILL +D+ + RF + L + GY+V ++ A + + F L++TD+ MP M Sbjct: 908 EKILLVDDEAPILRFQKQMLERLGYKVSERSSSVDALQAFKADIDSFDLVITDMSMPNMS 967 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 G +LA + + PD+ V+ +GF+ +N D + K L KP + EV R+L Sbjct: 968 GEQLAVKILAIRPDIPVIICSGFSE-KMNDDLSKTIGVKGFLMKPVIKSVMTKEVRRIL 1025 >gi|332702581|ref|ZP_08422669.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552730|gb|EGJ49774.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 500 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-- 61 +ILLAED++ + ++ L K G+ V + NGA A + + F L+L D+ MPEMDG Sbjct: 376 EILLAEDNEINQLVAVELLQKKGHRVTAVENGAKALEALSSNTFDLVLMDVRMPEMDGEA 435 Query: 62 -IELARRATELDPDLKVMFITGFA 84 + R DPD+ V+ +T +A Sbjct: 436 ATKAIRGGQAGDPDIPVVALTAYA 459 >gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 229 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L GYEV + NG A K +++ L++ D++MPEMDGIE Sbjct: 7 KILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKHPHLIILDVMMPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRLL 118 A P L+ IT A + A +A ++KP + LV++V LL Sbjct: 67 -ACEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVKALL 123 >gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD+ + L + L GY+V++ +NGA + E +++ D++MP++D Sbjct: 1 MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E RR E V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRR 120 Query: 121 KN 122 K Sbjct: 121 KT 122 >gi|253579586|ref|ZP_04856855.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849087|gb|EES77048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L YE ++ +G A +K++ +P ++L DI MP MD Sbjct: 1 MKYKILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIKMKP-DIILLDINMPRMD 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE+ R R+ L P ++F+T + ++KPF LR+L Sbjct: 60 GIEVCRLIRSKVLCP---ILFLTARVDEDDKINGLLSGGDDYITKPFSLREL 108 >gi|237729610|ref|ZP_04560091.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2] gi|226908216|gb|EEH94134.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R + L V+ +T +AVA L+KPF + +L + LL Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALL 116 >gi|170695068|ref|ZP_02886216.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170139920|gb|EDT08100.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 933 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 3 QKILLAEDDDDMRRFL-IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K++L DD + R + I LG+ G++ V NG A +K + +L+L D+VMPEMDG Sbjct: 724 RKLILVVDDVAVNRAVAIDMLGQLGFDAVGAINGFDALEKAQALQPALILMDVVMPEMDG 783 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E R+ + D ++ ++ A+ + S A L KP L++++ LL+ Sbjct: 784 LEATRQLRSISEFADRPIIAVSAGASGSDAAKSLAAGANAFLPKPIDFSALLSQIQMLLS 843 Query: 120 IK 121 I+ Sbjct: 844 IE 845 >gi|152997303|ref|YP_001342138.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150838227|gb|ABR72203.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 121 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+ +D +R+ + L AGY V + ++G +A + + E F +LTD MP MD Sbjct: 1 MSKKLLIVDDSPSVRQMVEMTLKGAGYAVKTASDGQAALNLCKTEMFDFVLTDQNMPNMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI L + RA + ++ +T A + A + KPF + L+ V ++L Sbjct: 61 GITLIKSLRAMPSYARVPLIVLTTEAGETMKQKGKAAGATGWMVKPFDPKKLLEVVAKVL 120 >gi|77362273|ref|YP_341847.1| EBP family response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76877184|emb|CAI89401.1| putative response regulator in two-component regulatory system (EBP family) [Pseudoalteromonas haloplanktis TAC125] Length = 454 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 2/113 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++++ +D+ +R L + L GY+V ++GA+A ++ ++L+DI MP MD Sbjct: 6 LCKQVMVIDDEAMIRDSLNQLLTLEGYQVQCFSDGATALSRLSRGYSGVVLSDINMPAMD 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF--HLRDLV 111 G+ L + D +L V+F+TG+A V++ + + KP HL D + Sbjct: 66 GLTLLEQIKAFDSELPVIFLTGYADVSVAVKAMQLGAYDLFEKPLNEHLIDCI 118 >gi|149210725|ref|XP_001522737.1| hypothetical protein MGCH7_ch7g835 [Magnaporthe oryzae 70-15] gi|86196790|gb|EAQ71428.1| hypothetical protein MGCH7_ch7g835 [Magnaporthe oryzae 70-15] Length = 1195 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 15/129 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE------EPFSLLLTDIVMP 57 + LL +D+ + L+ K G NG A++ RE + F +LTDI MP Sbjct: 1067 RFLLVDDNPINLKILVSYAKKLGRRFACATNGLEAFEAFRESIGQGADAFKFVLTDISMP 1126 Query: 58 EMDGIELARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 MDG E RR L+ P + +TG A+ ++ A +L+KP L+ Sbjct: 1127 VMDGFESTRRMRSLEMERGLPRCNIFALTGLASAGAQEEAFASGIDLLLTKPVRLK---- 1182 Query: 113 EVNRLLTIK 121 E+N++L K Sbjct: 1183 ELNKILESK 1191 >gi|114563018|ref|YP_750531.1| response regulator receiver protein [Shewanella frigidimarina NCIMB 400] gi|114334311|gb|ABI71693.1| response regulator receiver protein [Shewanella frigidimarina NCIMB 400] Length = 180 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 62/112 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ EDD + L + LGK G+E +C++ + + R+ + ++ D+ + E + Sbjct: 1 MMNKLLIIEDDLALATILARRLGKHGFECKTCHHASDSLLMARQFVPTHIVLDMKLAEHN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 G+ L + +L P++ ++ +TGFA++A ++ L+KP + L+N Sbjct: 61 GLSLIKPLRQLLPNVHMVLLTGFASIATAVEAIRLGADNYLAKPVDTQTLLN 112 >gi|294775611|ref|ZP_06741120.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294450553|gb|EFG19044.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 460 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD L L K G+ V + ++ A A ++ +P+ L+L+D+ +P+ D Sbjct: 1 MPHSILIVEDDLTFATMLKTWLSKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLPDQD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI L E ++ ++ +TG+A + + + +SKP +L+ ++N L Sbjct: 61 GIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEALQN 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|260172239|ref|ZP_05758651.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] Length = 1314 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD+++R +L LG Y+V + NGA AY + L+++D+VMPEMDG E Sbjct: 1062 RILVVDDDEEIREYLKFELG-IYYKVRTACNGAEAYQIALNQRIDLIISDVVMPEMDGFE 1120 Query: 64 LARR 67 L ++ Sbjct: 1121 LLKK 1124 >gi|239905744|ref|YP_002952483.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795608|dbj|BAH74597.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 721 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD R + LGK G++V NG A + + F L+L D+ MP M+G+E Sbjct: 593 RILLAEDDAINRMVAVGMLGKLGHQVTVAQNGREALLLLDAQSFDLMLLDVQMPVMNGVE 652 Query: 64 LARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A+ E PD+ ++ T ++ + + + L KP L + ++R++ Sbjct: 653 VAKAVREGWGGRPDMPLVATTAYSMNSQCENFLEAGMNECLVKPLEYDTLKHAISRVM 710 >gi|237746860|ref|ZP_04577340.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] gi|229378211|gb|EEO28302.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] Length = 821 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 +++LL ED+D R + LG+ G V + NG A +K P + L+ D+ MP M Sbjct: 691 KRVLLVEDNDLNREIAEEILGQTGASVETAVNGQEALEKFCTRPEFYYDLIFMDLQMPVM 750 Query: 60 DGIELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 DG+E R+ L D K + I A A D A K A + L+KP + L +N Sbjct: 751 DGLETTRQIRSLSRKDAKTVPILAMTANAFTEDVAATKAAGMNAHLAKPLDIGLLDQVMN 810 Query: 116 RLL 118 R L Sbjct: 811 RYL 813 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%) Query: 19 IKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGIELARRATE-LDPDL 75 ++ +G G+ V+S EE FS ++ D+ MP+MDGIE RR E + PD+ Sbjct: 567 LEEIGLKGHWVLSGKEAIRKAVAAHEEKNDFSTIIIDLKMPDMDGIETTRRIREKIGPDI 626 Query: 76 KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ I+ + ++ A + KP LV + + Sbjct: 627 PIILISAYDWTEFETEARAAGVNGFIVKPMLKSSLVYAIKK 667 >gi|226228998|ref|YP_002763104.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226092189|dbj|BAH40634.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 620 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILLAED+D +R AL + GY V++ NG +A P LL+TD+VMP M+ Sbjct: 498 ETILLAEDEDAVRTVATAALERRGYRVLAAANGDAALAISLAFPGRIDLLVTDVVMPGMN 557 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA R L P L V++++G+ + + +L+KPF +L V ++ Sbjct: 558 GRALADRLVMLRPGLPVLYVSGYTDDEVLRKGISADERTLLAKPFTSLELSRRVRTMI 615 >gi|89891759|ref|ZP_01203262.1| transcriptional regulator, helix-turn-helix, sigma-54 interaction domain [Flavobacteria bacterium BBFL7] gi|89516094|gb|EAS18758.1| transcriptional regulator, helix-turn-helix, sigma-54 interaction domain [Flavobacteria bacterium BBFL7] Length = 442 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD ++ L + L Y + A +R+ LL+TD+ MPE+DG Sbjct: 6 ENILIVDDDVNILELLQRHLQSWNYHTYRAVSVKEAVQILRDTKIDLLITDLKMPEIDGT 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL + +E P+L + +TG+ +V + + L+KPF +L V++ L +K+ Sbjct: 66 ELIKFVSEHYPNLPKLVVTGYPSVQDSLVAIKSGVVDYLTKPFTKEELQQAVDKSLGLKS 125 >gi|108763029|ref|YP_631993.1| sigma-54 dependent DNA-binding reponse regulator [Myxococcus xanthus DK 1622] gi|34329404|gb|AAQ63906.1| mutant NtrC-like activator [Myxococcus xanthus] gi|108466909|gb|ABF92094.1| sigma-54 dependent DNA-binding reponse regulator [Myxococcus xanthus DK 1622] Length = 477 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 2 NQKILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 ++L+ +DD +R R ++K+L +G EV +G A +K+ P+ L+++D+ MP Sbjct: 10 TTRVLVVDDDAGVRFTLREMLKSL--SGVEVDEAVDGEDALEKLSARPYELVISDLRMPR 67 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG+EL RR + +V+ IT + ++ KPF + +L+ V+R L Sbjct: 68 MDGMELVRRLSLFSRSPRVIVITAHGSERFAVEAMKAGAYDYFRKPFDVDELLAVVSRAL 127 >gi|78221426|ref|YP_383173.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78192681|gb|ABB30448.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 374 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ +R +AL GY V+ +G A + ++LTD++MP+++GI Sbjct: 14 KTILVVDDEAVIRDLCARAL--KGYRVLQAADGEEALRLFEKGGVDVILTDVMMPKINGI 71 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR +L+P + V+ +TG+A + ++ ++KP ++ L V++ L Sbjct: 72 ELLRRLKDLEPTIVVIVMTGYAEKEIILNALKADADDFITKPLNILQLKTAVDKAL 127 >gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ M+ + L GY+ ++ +G A + + + L+L DI+MP++D Sbjct: 1 MKKTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + R + D + ++ +T +A ++KPF L+ LV ++N LL Sbjct: 61 GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALL 118 >gi|325295062|ref|YP_004281576.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065510|gb|ADY73517.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 441 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 62/115 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ EDDD R L + L ++G+EV + + V + ++++TD+ +P MDG Sbjct: 7 KRKVLIIEDDDIQRELLKEILKESGFEVFTSSTAEKGLQTVAKNSPAVVVTDVRLPGMDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + +++V+ IT F+ V + ++KPF + L+N +++ Sbjct: 67 LTFLKKLKQEHSEIEVIVITAFSNVEDAVSAIKAGAFHYVTKPFDPQVLINLIDK 121 >gi|291535476|emb|CBL08588.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L YE ++ +G A +K++ +P ++L DI MP MD Sbjct: 1 MKYKILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIKMKP-DIILLDINMPRMD 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE+ R R+ L P ++F+T + ++KPF LR+L Sbjct: 60 GIEVCRLIRSKVLCP---ILFLTARVDEDDKINGLLSGGDDYITKPFSLREL 108 >gi|283835613|ref|ZP_06355354.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC 29220] gi|291068825|gb|EFE06934.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC 29220] Length = 224 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 59/107 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L+KPF + +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEEL 108 >gi|326317482|ref|YP_004235154.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374318|gb|ADX46587.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 705 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ EDD +R F+ + L G++V+S GA + F LL++D+ +P +G + Sbjct: 585 VLVVEDDATVREFVCELLRDLGFQVMSARTGAEGMAMLSGAIHFDLLVSDVGLPGPNGRQ 644 Query: 64 LARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +A A E P + V+ +TG+A A++P + +++ KPF + LV +V Sbjct: 645 VADFARERLPGILVLLMTGYAEQAAMDPGFLSTHRMELIVKPFDAQALVKKV 696 >gi|224369866|ref|YP_002604030.1| sigma-54 dependent two component DNA-binding response regulator (Fis family protein) [Desulfobacterium autotrophicum HRM2] gi|223692583|gb|ACN15866.1| sigma-54 dependent two component DNA-binding response regulator (Fis family protein) [Desulfobacterium autotrophicum HRM2] Length = 467 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ MR FL L + GY+V NNG A + + F L+L+DI + ++ G++ Sbjct: 7 KILVVDDELSMREFLEVLLVQEGYDVSLANNGKQAVALIEKHSFDLVLSDIRLGDLTGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R A + D + V+ I+ ++ + ++ + KPF +L + + L +K Sbjct: 67 VLRAAKKKDSETVVVLISAYSTTEIAVEAMNEGAFDFVPKPFDNSELKATLGKALELK 124 >gi|254458576|ref|ZP_05072001.1| putative response regulator recevier domain protein [Campylobacterales bacterium GD 1] gi|207084884|gb|EDZ62171.1| putative response regulator recevier domain protein [Campylobacterales bacterium GD 1] Length = 135 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 59/116 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ ED+ + + + K L +VV ++G ++ ++ PFSL+LTD+ MP M+G Sbjct: 18 NFSLLMVEDEIMVSKPMKKVLEYLCNDVVVADDGVQGWELYQQRPFSLVLTDLQMPNMNG 77 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EL + +D + ++ IT F + +L KPF ++ ++ N L Sbjct: 78 AELIEKIRAVDQEKIIIVITAFREGKEYKKAQELGANFILKKPFSVQSVIEIFNTL 133 >gi|158321845|ref|YP_001514352.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158142044|gb|ABW20356.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus oremlandii OhILAs] Length = 457 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + R L G+ V G A +K+ EE + ++L D++MP +DG+E Sbjct: 6 KILIVDDEREYRETYRMILESRGFSVGEAETGVKALEKLEEEYYPIVLCDVIMPGIDGLE 65 Query: 64 LARRATE-LDPDLKVMFITGFAAV 86 + ++ E D ++V+ +TG+ V Sbjct: 66 VLKKIKETYDKSVEVIMVTGYGGV 89 >gi|12964066|emb|CAC29257.1| putative regulatory protein [Bartonella taylorii] Length = 240 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MD Sbjct: 7 ITQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + D+ V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDIPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLL 118 V +L Sbjct: 119 VKAIL 123 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD L L Y V +G +A+D ++ + L+L D+V+P++DGI Sbjct: 2 KILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ + + ++ +TG + A+ D+ A L KPF + +LV + LL Sbjct: 62 LCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGAD---DYLVKPFDIEELVARIRALL 116 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD ++ L L G ++ N ++ + +L+ D+ +P ++GIE Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE-VNRLLTI 120 L R R +L ++F+T + + + +SKP +LV VNRL + Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRIVNRLERM 516 Query: 121 K 121 K Sbjct: 517 K 517 >gi|313674945|ref|YP_004052941.1| response regulator receiver protein [Marivirga tractuosa DSM 4126] gi|312941643|gb|ADR20833.1| response regulator receiver protein [Marivirga tractuosa DSM 4126] Length = 125 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+AED ++ K L Y + S NG + E F ++L DI MP+MDG+ Sbjct: 5 KKVLIAEDSSVIQNLTKKILMMQNYSIHSAKNGEQVLKALESESFDIILMDINMPKMDGM 64 Query: 63 ELARRATELDPDLK----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E R LD K ++ ITG A D + L KP + LV V +L Sbjct: 65 ECTRAIRALDDKEKSAIPIIAITGNAKNYSIEDFKEAGINEYLQKPLNFDQLVETVKKL 123 >gi|298505083|gb|ADI83806.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 464 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 61/116 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++I+L ++++ + R + L +GY V A ++ + + L+++DI MP MDG+ Sbjct: 5 KRIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKAGDWDLVVSDIKMPGMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ +R DP + V+ IT +A V + + +++KPF +L+ V L Sbjct: 65 EVLQRIKAKDPLVPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNAL 120 >gi|302382338|ref|YP_003818161.1| Fis family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192966|gb|ADL00538.1| response regulator receiver protein [Brevundimonas subvibrioides ATCC 15264] Length = 127 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD+++R + L +AG++V ++G +A V+ F+L+L D+ MP M Sbjct: 1 MKTSILVVDDDENIREVIHAILTQAGFQVAVVSSGEAALAMVKRSRFALMLLDVHMPRMG 60 Query: 61 GIEL---ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+++ RR E P V+ ++ + ++ A ++KPF LV+ V R Sbjct: 61 GLDVMAAMRRLVEAPP---VLMVSADSQSRTVREAVALGCVGYVAKPFSPGSLVDRVRRA 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|265754262|ref|ZP_06089451.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263234971|gb|EEZ20526.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1446 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED+ ++R+F+ + L Y VV +G A +++ EE ++TDI+MP MDGIE Sbjct: 1190 KVMVVEDNAELRQFICEIL-SGTYRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248 Query: 64 LARRATE 70 L R E Sbjct: 1249 LIRHIKE 1255 >gi|288941950|ref|YP_003444190.1| response regulator receiver protein [Allochromatium vinosum DSM 180] gi|288897322|gb|ADC63158.1| response regulator receiver protein [Allochromatium vinosum DSM 180] Length = 121 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + L +AGY V +G DK R F L+ TD MP MD Sbjct: 1 MAKTILTVDDSASIRQMVSFTLKEAGYAVTEAVDGQDGLDKARSGKFDLIFTDQNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + RA + ++ +T ++ A+ A L KPF L+ V +++ Sbjct: 61 GLSLIKQLRALPTYKSVPILMLTTESSDAMKSQGRAAGATGWLVKPFDPAKLLEVVRKVI 120 >gi|237709630|ref|ZP_04540111.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229456266|gb|EEO61987.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1446 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED+ ++R+F+ + L Y VV +G A +++ EE ++TDI+MP MDGIE Sbjct: 1190 KVMVVEDNAELRQFICEIL-SGTYRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248 Query: 64 LARRATE 70 L R E Sbjct: 1249 LIRHIKE 1255 >gi|237725226|ref|ZP_04555707.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229436492|gb|EEO46569.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1446 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED+ ++R+F+ + L Y VV +G A +++ EE ++TDI+MP MDGIE Sbjct: 1190 KVMVVEDNAELRQFICEIL-SGTYRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248 Query: 64 LARRATE 70 L R E Sbjct: 1249 LIRHIKE 1255 >gi|226225802|ref|YP_002759908.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226088993|dbj|BAH37438.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 672 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 5/111 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEM 59 Q+IL+ ED DD R L + L G++V + + A ++ E P+ L+LTD+ +P+ Sbjct: 550 QRILVVEDHDDGRMLLRRILEGDGHQVDAVASVTEAKSRLAVEGGMPYDLMLTDVGLPDG 609 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G +LAR + P L+V ITG+ A A + ++ + VL KP ++L Sbjct: 610 SGWDLARESRASWPALRVGVITGWEATAGSEEARGVEF--VLRKPLRAQEL 658 >gi|222082354|ref|YP_002541719.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Agrobacterium radiobacter K84] gi|221727033|gb|ACM30122.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Agrobacterium radiobacter K84] Length = 436 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DDD R L + AG ++ + ++G SA + + +L+TDI MP +DG Sbjct: 8 RVMLVDDDDAFRVALADSFAIAGLDIETYSDGHSALASLNADFPGVLVTDIRMPRVDGHG 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + A DP+L V+ +TG +A+ + ++KPF ++ V R L ++ Sbjct: 68 VLDAALARDPELPVILMTGHGDIAMAVAALKQGAFDFIAKPFATDHMIASVRRALEMRR 126 >gi|218439786|ref|YP_002378115.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7424] gi|218172514|gb|ACK71247.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7424] Length = 308 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 IL+ +DD R L A+ + GY+V++ +G ++ R +P +LL D VMPEMDG Sbjct: 15 ILVVDDDRSTRTLLKVAMEEEGYQVITAKDGEECINEFNRCQPHMILL-DAVMPEMDGFT 73 Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +R EL + ++ IT + ++KP H L V RLLT Sbjct: 74 CCQRLRELSEGSQIPILMITALDDQDSIDQAFTCGAVDYITKPIHWAVLAQRVKRLLT 131 >gi|171058219|ref|YP_001790568.1| response regulator receiver protein [Leptothrix cholodnii SP-6] gi|170775664|gb|ACB33803.1| response regulator receiver protein [Leptothrix cholodnii SP-6] Length = 121 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +++ +D R + AL KAGY VV +G A K+ + +L++ D+ MP MD Sbjct: 1 MSKTVMVVDDSSSFRTVVKLALQKAGYSVVEAGDGKDAVAKLTGQKINLIVCDVNMPNMD 60 Query: 61 GIELARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+ R A + P V+ +T + A + A ++KPF LV VN Sbjct: 61 GLAFLRHIKALAAYKFTP---VIMLTTESQEAKKAEGRAAGARAWITKPFQPSQLVEAVN 117 Query: 116 RL 117 +L Sbjct: 118 KL 119 >gi|149918425|ref|ZP_01906915.1| Multi-sensor Hybrid Histidine Kinase [Plesiocystis pacifica SIR-1] gi|149820725|gb|EDM80135.1| Multi-sensor Hybrid Histidine Kinase [Plesiocystis pacifica SIR-1] Length = 596 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 1/110 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 ++++LL ED+D +RR K L GY V +GA A + L+L+D+ MP M Sbjct: 467 SERVLLVEDNDAVRRSTAKLLESMGYAVEVARDGAEAVEAFEGGLRVDLVLSDLSMPRMT 526 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G ELA E P+L ++ ++G VA + + KP LR L Sbjct: 527 GAELADYVREHYPELAIVLMSGNLDVADLKEEVEAGRMAFMQKPISLRSL 576 >gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1049 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + + L K G+ VV+ NGA + +R F ++L DI MP MDG+E Sbjct: 926 ILLAEDERVNSLVMKRLLEKGGHTVVAVENGAEVLETLRTASFDVILMDIQMPVMDGVET 985 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPD 91 AR RA + DL + I A A+ D Sbjct: 986 ARAIRAGRVGADLTDIPIVAVTAYAMVGD 1014 >gi|317480636|ref|ZP_07939723.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316903143|gb|EFV25010.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1310 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD DMR +L+ +L + Y+VV+ +G A + RE ++++DIVMP ++G EL Sbjct: 1068 LLLAEDDADMREYLVDSL-SSEYKVVAVPDGGKALETAREINPDIIISDIVMPVLEGDEL 1126 Query: 65 AR 66 R Sbjct: 1127 CR 1128 >gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1101 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+AED+ + + L K G+ V+ +G A ++ EEPF L+L DI MP MDG Sbjct: 844 NLRVLVAEDNPVNIKLMSIHLQKLGHTAVTATSGEGALARLAEEPFDLVLMDIEMPSMDG 903 Query: 62 IELARRATE--------LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 + ARR D + ++ +T + + + KP +L +L Sbjct: 904 LTAARRIRAGGSAERPVRDKAIPIIAVTAHVSPEVRQACAEAGMDAYVGKPVNLEELAGT 963 Query: 114 VNRLLTIKN 122 ++RL K+ Sbjct: 964 IDRLAARKD 972 >gi|270296014|ref|ZP_06202214.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273418|gb|EFA19280.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1310 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD DMR +L+ +L + Y+VV+ +G A + RE ++++DIVMP ++G EL Sbjct: 1068 LLLAEDDADMREYLVDSL-SSEYKVVAVPDGGKALETAREINPDIIISDIVMPVLEGDEL 1126 Query: 65 AR 66 R Sbjct: 1127 CR 1128 >gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 239 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +D+ ++R L +L AG+EV + +G SA VR+ L++ D+++P+MDG Sbjct: 7 RLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPDMDGFT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E + V+F+T ++KPF L ++V + +L Sbjct: 67 VTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVL 121 >gi|254563433|ref|YP_003070528.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254270711|emb|CAX26716.1| putative hybrid histidine kinase; HK, ATPase, PAS and a response regulator receiver domain [Methylobacterium extorquens DM4] Length = 604 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ ++ F +AL + GY V + A ++ P F ++ TD+VMP M+G+ Sbjct: 484 VLLVEDNREVGAFATQALAELGYGTVWAMDAEQALSELDRTPERFDVVFTDVVMPGMNGV 543 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ELAR P + ++ +G++ V L D + +L KP+ + DL Sbjct: 544 ELARTILGRTPGMPIVLSSGYSHV-LAEDGH--HGFPLLHKPYSVEDL 588 >gi|212690595|ref|ZP_03298723.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855] gi|212666841|gb|EEB27413.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855] Length = 1440 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED+ ++R+F+ + L Y VV +G A +++ EE ++TDI+MP MDGIE Sbjct: 1184 KVMVVEDNAELRQFICEIL-SGTYRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1242 Query: 64 LARRATE 70 L R E Sbjct: 1243 LIRHIKE 1249 >gi|160943091|ref|ZP_02090328.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii M21/2] gi|158445560|gb|EDP22563.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii M21/2] Length = 262 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 64/114 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ +R + + L +GYEV +C +G +A + + E + L+L D+ +P++DG++ Sbjct: 39 RLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALEALAAERYDLVLLDLNLPKVDGMQ 98 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + D + V+ ++ + +A + LSKPFHL +L V L Sbjct: 99 VLRSLRQHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSL 152 >gi|158339458|ref|YP_001520635.1| response regulator [Acaryochloris marina MBIC11017] gi|158309699|gb|ABW31316.1| response regulator [Acaryochloris marina MBIC11017] Length = 118 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LL ED++ + RF+ K L K GY+ +G A D+ E F ++L D+ +P + G Sbjct: 2 KRVLLVEDEERIARFVEKGLLKHGYQSTLVTDGQQALDQANLEAFDVVLLDLGLPIISGW 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + ++ IT F V + + A +SKPF +L+ + R L Sbjct: 62 TVLQTLRQRGFTVPIIVITAF--VDQDELALASGATDFISKPFQFSELIETIQRHL 115 >gi|145225002|ref|YP_001135680.1| multi-sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|145217488|gb|ABP46892.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK] Length = 1361 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L GY V + +G A + +R EP L+++D++MP +DG+ Sbjct: 605 RVLVADDNADMREYLGRLLRSDGYAVEAVVDGWQALEAIRAEPPDLVISDVMMPRLDGLG 664 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L RA + V+ ++ A + L KPF +L+ V Sbjct: 665 LVAELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARV 717 >gi|222056884|ref|YP_002539246.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221566173|gb|ACM22145.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 787 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 I+ +D+ +R + L + GY V ++G A +++ P SLL+TD+ MP M G Sbjct: 665 IVFVDDEQQIREMAREFLTEQGYLVELYSDGVHALAGIKDNPSACSLLVTDMAMPGMSGK 724 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA L PDL ++ TG++ + + + L KP ++ L ++ LL Sbjct: 725 DLAHEVLRLRPDLPIILCTGYSELINGESAKYAGIREYLQKPVPMKILCEKIRWLL 780 >gi|94263652|ref|ZP_01287461.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455957|gb|EAT06112.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 647 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 14/111 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 KILL ED MR+ K LG+ G+ ++ +G A +K++ EE L+++D MP MDG Sbjct: 8 KILLVEDAATMRKMEAKILGQVGFNNIIEAVDGREAVEKLQGEEGIGLVISDWSMPNMDG 67 Query: 62 IELAR--RATELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPF 105 +EL + R E DL + TG + A A+ +N V++KPF Sbjct: 68 LELVQWLRGQEQFKDLPFLMATGHGDKEYVAKAMENGANG-----VVAKPF 113 >gi|77919613|ref|YP_357428.1| response regulator CheY [Pelobacter carbinolicus DSM 2380] gi|77545696|gb|ABA89258.1| response regulator CheY [Pelobacter carbinolicus DSM 2380] Length = 129 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 62/117 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+++ R L L GY+V S NG A + +R +++++D+ MPEM+G+ Sbjct: 5 EKILVVDDEENARIALRAILQNEGYQVDSVANGFEALEFLRMHKVNVVISDLKMPEMNGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R P +V+ +T + V ++ + + KP + +L ++++LT Sbjct: 65 SFLRELNRRYPSTRVIMVTAYGGVESYLEAIQLGAFEYIHKPVKVDELKFIMHKMLT 121 >gi|49474886|ref|YP_032927.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49237691|emb|CAF26878.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 240 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MD Sbjct: 7 ITQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + D+ V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDIPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLL 118 V +L Sbjct: 119 VKAIL 123 >gi|315920545|ref|ZP_07916785.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694420|gb|EFS31255.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1326 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD+++R +L LG Y+V + NGA AY + L+++D+VMPEMDG E Sbjct: 1074 RILVVDDDEEIREYLKFELG-IYYKVRTACNGAEAYQIALNQRIDLIISDVVMPEMDGFE 1132 Query: 64 LARR 67 L ++ Sbjct: 1133 LLKK 1136 >gi|220906225|ref|YP_002481536.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219862836|gb|ACL43175.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 634 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 IL +D+ +R +L Y V++ +G A + ++ L++ D++MP +DG+ Sbjct: 515 ILFVDDEAPIRETTKASLETYNYRVITAGDGFEALELYAQHQQDIRLVVLDMMMPAIDGL 574 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 R+ E++P +K++ ++G +ALN +S+ P+ V L KP+ + DL V++ L Sbjct: 575 TTIRKLKEINPQVKIIAVSG---LALNYESSPPEQFGVHSLLRKPYTIGDLTKAVHQALA 631 Query: 120 IKN 122 N Sbjct: 632 RVN 634 >gi|229918206|ref|YP_002886852.1| response regulator receiver protein [Exiguobacterium sp. AT1b] gi|229469635|gb|ACQ71407.1| response regulator receiver protein [Exiguobacterium sp. AT1b] Length = 120 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ +R ++ L GY++ +G AY + E + L++ D +MP M G+E Sbjct: 3 KILLAEDEEVLRMLVMDTLEDEGYDIDEAQDGIEAYRLIEENEYDLVIVDHMMPGMTGLE 62 Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 + + +L + KVM +T + + +N +SKPF +LV Sbjct: 63 VIEKVRKLPGRQETKVMMLTAKSQQSDRDCANEIGVDYFISKPFSPLELVK 113 >gi|115377600|ref|ZP_01464797.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|310820429|ref|YP_003952787.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365401|gb|EAU64439.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|309393501|gb|ADO70960.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1020 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR ++ + L + V + +GA+A D P L+LTD++MP +DG Sbjct: 634 RILLADDNADMREYVARLLSPR-WTVEAVADGAAALDVALARPPDLVLTDVMMPRLDGFG 692 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R R+ + V+ ++ A + L KPF R+L+ V+ L I Sbjct: 693 LLRALRSQASTRAIPVIMLSARAGEEARVEGMEAGADDYLVKPFSARELLARVSARLEI 751 >gi|91781651|ref|YP_556857.1| two component, sigma-54 specific, Fis family transcriptional regulator [Burkholderia xenovorans LB400] gi|91685605|gb|ABE28805.1| two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family [Burkholderia xenovorans LB400] Length = 450 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG+EV+ + SA + + ++++DI +P G++ Sbjct: 7 QVLYIEDDELVRRASVQSLQLAGFEVIGHASVESAAKTIGADFSGVIVSDIRLPGASGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 67 LLAQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAL 121 >gi|83814249|ref|YP_446168.1| sensory box sensor histidine kianse/response regulator [Salinibacter ruber DSM 13855] gi|83755643|gb|ABC43756.1| sensory box sensor histidine kianse/response regulator [Salinibacter ruber DSM 13855] Length = 905 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 49/81 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ + + L AGYEV + + A+A + +E L++TD+ MPEM G++ Sbjct: 784 QVLVVDDEEFVLESAQQTLEAAGYEVRTALDAAAALRVMEKEAIDLVITDLRMPEMSGLD 843 Query: 64 LARRATELDPDLKVMFITGFA 84 L RR E PDL ++ +G A Sbjct: 844 LIRRLQERHPDLPIVAASGVA 864 >gi|116748083|ref|YP_844770.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] gi|116697147|gb|ABK16335.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] Length = 124 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 60/112 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ + + + L + G++V +NG +A V + F +++ D+ MP MDGI+ Sbjct: 5 RVLLVDDEVEFTASMSRVLRRRGFDVEVADNGLAALPLVAGKAFDVVVLDVKMPGMDGIQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + L P+ +V+ +TG ++ + +A L KPF + LV+ + Sbjct: 65 ALQEIKRLSPETRVLVLTGHFSIGEEEELSAGGAYAYLLKPFPILKLVDLIT 116 >gi|317485002|ref|ZP_07943885.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923740|gb|EFV44943.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 247 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 44/81 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ +R L + GY+V + + A + PF +++TDI MP MDG+ Sbjct: 6 RVLLVDDEPGIRHVLGALIRDFGYDVHTAESAREALEAFTANPFPIVVTDIRMPGMDGLA 65 Query: 64 LARRATELDPDLKVMFITGFA 84 L R +PD +V+ ITG Sbjct: 66 LLERVRNQNPDTQVVMITGHG 86 >gi|302037585|ref|YP_003797907.1| sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] gi|300605649|emb|CBK41982.1| Sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] Length = 471 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +DD+ + L L G+ V C G A R+E F + +TD+ + DG Sbjct: 3 QERILVVDDDEGLLHLLRMRLSALGFSVTPCTGGRDALTAARQETFDIAITDLRLRAEDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + LA ++ P L V+ +T ++ ++ L+KPF ++L +++ L Sbjct: 63 LALAEELMQIQPGLPVIILTAHGSIPNAVEAMQRGAFGYLTKPFDDKELKATLDKAL 119 >gi|255028239|ref|ZP_05300190.1| hypothetical protein LmonL_01479 [Listeria monocytogenes LO28] Length = 202 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|255284211|ref|ZP_05348766.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM 14469] gi|255265236|gb|EET58441.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM 14469] Length = 223 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 46/78 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + + L +G++V C AYD++ + L+++DI+MPE+DG E Sbjct: 3 KILVVEDDVKLNQTVCTYLSDSGFQVKGCLRAREAYDEMYNNLYDLIISDIMMPEIDGFE 62 Query: 64 LARRATELDPDLKVMFIT 81 A ++ + ++F++ Sbjct: 63 FAETVRRVNRHIPILFMS 80 >gi|197124294|ref|YP_002136245.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196174143|gb|ACG75116.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 125 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R+ + + L + G++VV+ +G A ++R L+L D++MP M+G E Sbjct: 3 RVLIVDDESDIRQAVAEVLAEEGHQVVAAGDGEEALAQIRAFHPELVLLDLMMPVMNGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R A + DPD+ + + +A+ + A + KPF L L++ V R Sbjct: 63 F-RAAQKGDPDISAIPVVILSAMGRD---GAIDADGFIQKPFDLEMLLSMVRR 111 >gi|253701430|ref|YP_003022619.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251776280|gb|ACT18861.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 444 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 46/79 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +RR L L + GY VV+ NG +A + E+ L+L D+ + MDG E+ Sbjct: 4 ILIADDDIAIRRTLELHLTEEGYSVVTAANGPNAVEVALEKEIDLMLLDLRLSGMDGFEV 63 Query: 65 ARRATELDPDLKVMFITGF 83 R E P+L ++ IT + Sbjct: 64 LGRVKERRPELPIVMITAY 82 >gi|148556761|ref|YP_001264343.1| integral membrane sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148501951|gb|ABQ70205.1| integral membrane sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 520 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R + L G V + NG A + E + +L D MP M+G E+ Sbjct: 406 VLVVDDEPIVREVVADMLVDLGCTVRTAENGERALAMIEREIPTAILLDFAMPGMNGAEV 465 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 AR A + PDL+++F TGFA + D+ A VL KPF LV + Sbjct: 466 ARAALQRWPDLRIVFATGFAQ-SDAIDAVLGDRAIVLRKPFSPNTLVQALQ 515 >gi|118444113|ref|YP_877939.1| chemotaxis protein CheY [Clostridium novyi NT] gi|118134569|gb|ABK61613.1| chemotaxis protein cheY [Clostridium novyi NT] Length = 119 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K GYEVV +NG A + + E ++ DI MP+MDGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNGYEVVGEASNGLKAVELYKSEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + + DP K++ + + D+ + KPF ++ V +++ Sbjct: 63 EAVKAIRDFDPAAKIIMCSAMGQQTMVMDAIKSGAKDFIVKPFQADRVLEAVKKVI 118 >gi|34496471|ref|NP_900686.1| chemotaxis protein CheY [Chromobacterium violaceum ATCC 12472] gi|34102324|gb|AAQ58690.1| chemotaxis protein CheY [Chromobacterium violaceum ATCC 12472] Length = 122 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ + L AGYEV+ NG A D + L+++D+ MP+MD Sbjct: 1 MGKTILIVDDSTTLRQVVRMTLAGAGYEVLEAGNGKEALDILDGRKIHLIISDVNMPQMD 60 Query: 61 GIELARRATELDPDLK----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ L + +L P K +M T A A A V+ KPF L+ V++ Sbjct: 61 GLALLKNIKQL-PHYKFTPVIMLTTESAEDKKREGKEAGAKAWVV-KPFQPPVLLTAVSK 118 Query: 117 LL 118 L+ Sbjct: 119 LI 120 >gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501] gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501] Length = 228 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 10/121 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ L L GY+V + NGA +K R++ L++ D++MPEMDGIE Sbjct: 7 KILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKNPHLIILDVMMPEMDGIE 66 Query: 64 LAR--RATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R T+ D + F+T ++ VA D+ A ++KP + +++V L Sbjct: 67 ACEIIRKTKGLQDSIIAFLTARNEDYSQVA-GFDAGAD---DYITKPIKPKVFISKVKAL 122 Query: 118 L 118 L Sbjct: 123 L 123 >gi|295093907|emb|CBK82998.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 236 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 8/119 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 K+L+ +D+ D+R L L + GY+VV +G A + VR ++ L++ DI+MP++ G Sbjct: 9 KVLIVDDEQDIRTLLNIYLKRLGYDVVEAADGVEAVETVRADKDIDLIVMDIMMPKLSGT 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 E ++ E + V+F+T A PD N + L+KPF + +VN L+ Sbjct: 69 EACQQIREF-SSIPVLFLT---AKTKEPDQNEAYDVGGDDFLAKPFTQSEFNRKVNALI 123 >gi|254881220|ref|ZP_05253930.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_3_47FAA] gi|254834013|gb|EET14322.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_3_47FAA] Length = 311 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED D+R +L + L A Y ++ NG R+E L++TD++MP M+G E Sbjct: 51 KLLVVEDHADIRLYL-RVLFSATYNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 109 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E DLK I AL D N K ++ + KPF+ L +V RL+ Sbjct: 110 CCRILKE---DLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 166 >gi|302876970|ref|YP_003845603.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687661|ref|ZP_07630107.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579827|gb|ADL53839.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 225 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD + L +LG+ GY V+ C++ A+ + + E L L D+ +P+ G EL Sbjct: 3 ILLVEDDKTIAAGLEYSLGQEGYTVIMCHSVAAGKEAIEEIQLDLCLFDLSLPDGSGYEL 62 Query: 65 ARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A D+ ++F+T V + D A ++KPF +++L++ + +L Sbjct: 63 CKMA-RAKSDMPIIFLTACDDEVNVVMGLDMGAD---DYITKPFRIKELISRIKSVL 115 >gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 211 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E+V NG A+ VR E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEAFTFVRTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRIKQYDETIKILILSSFS 86 >gi|167618000|ref|ZP_02386631.1| response regulator [Burkholderia thailandensis Bt4] Length = 441 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV+ +GA+A D + L+++D+ MP M G E Sbjct: 4 ILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAAGEADLIISDMRMPGMTGAEF 63 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 64 LARAQALHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVKQAL 118 >gi|139439532|ref|ZP_01772964.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC 25986] gi|133775085|gb|EBA38905.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC 25986] Length = 259 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 7/110 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ + RF+ L GY+V +G +A D E + L+L D+++P+++G+E Sbjct: 3 RILIVEDEEKIARFVTLELEHEGYQVEHAADGRTAVDLALERNYDLILLDVLLPQLNGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 + RR + D+ V+ +T AV D A +A L+KPF + +L Sbjct: 63 VLRRVRK-HKDVPVIMVTARDAVM---DKVAGLDAGADDYLTKPFAIEEL 108 >gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630] gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile CD196] gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile R20291] gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08] gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07] gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile] gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile CD196] gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile R20291] gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08] gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07] Length = 222 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ EDD +++ + + L GY+V + N+G K ++ + L++ DI+MP +D Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G + + + + ++F+T ALN + + K + ++KPF L+ V Sbjct: 61 GYGVCKMIRK-SSSVPIIFLT-----ALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVE 114 Query: 116 RLL 118 +L Sbjct: 115 AIL 117 >gi|159897494|ref|YP_001543741.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890533|gb|ABX03613.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] Length = 128 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+AEDD + L+ L EVV +G A + EP +LLTD M EM Sbjct: 1 MTKRILIAEDDTAIAMTLMIGLRSIPDVEVVRAYHGEEALNIWLHEPCDILLTDHHMREM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G++L R ++ IT + +V L ++ ++++KPF + L+++V+ Sbjct: 61 SGLDLIRALRSQGATQPMLMITAYDSVKLQREAREAGATELIAKPFFIDQLIDKVS 116 >gi|54022964|ref|YP_117206.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014472|dbj|BAD55842.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 225 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD+ + L +ALG+ GY V + G + + E LL+ D+ +P MDG+E+ Sbjct: 4 VLLAEDDEAIAAPLSRALGREGYTVTVESFGPAVLRRALEGNHDLLILDLGLPGMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ DL V+ +T V L+ ++ + KPF L +L+ V LL Sbjct: 64 CRQVRARGADLAVLMLTARTDEVDFVVGLDAGAD-----DYVGKPFRLAELLARVRALL 117 >gi|326798748|ref|YP_004316567.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326549512|gb|ADZ77897.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 231 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KILLAEDD ++ L L K ++V C +G A +E F L + D++MP+ DG Sbjct: 2 RKILLAEDDPNLGEILKDYLELKGKFDVKLCQDGEEALRTFSKEEFDLCILDVMMPKKDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + +++ + ++F T + ++ ++KPF + +L+ +N LL Sbjct: 62 FSLGKEIRKVNESVPIIFATAKGMMEDKTEAFNLGGDDYITKPFRVEELLLRINALL 118 >gi|325300482|ref|YP_004260399.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] gi|324320035|gb|ADY37926.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1456 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++K+L+ EDD D+R FL LGK +EV + ++G S + F L+++D++MP G Sbjct: 1195 HRKVLVIEDDTDVREFLKSELGKY-FEVTAASDGKSGLKEAHANDFDLIISDVMMPGHSG 1253 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNR 116 E+ R +L D + + AL+ + + + ++KPF + L+ R Sbjct: 1254 FEITR---QLKNDFETSHVPIILLTALDANESHLEGIDSGADAYITKPFSMNLLLARAFR 1310 Query: 117 LL 118 L+ Sbjct: 1311 LI 1312 >gi|297568638|ref|YP_003689982.1| response regulator receiver modulated chemotaxis protein CheW [Desulfurivibrio alkaliphilus AHT2] gi|296924553|gb|ADH85363.1| response regulator receiver modulated CheW protein [Desulfurivibrio alkaliphilus AHT2] Length = 711 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 4/111 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 +ILLAED MR+ +K L +AGY EV+ N+G A D++ + L+++D MP MDG Sbjct: 8 RILLAEDARAMRKMEVKILAEAGYPEVIQVNDGQEAVDRLTAGDQVDLVISDWSMPNMDG 67 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++L + R E +L ++ T + A VL KPF +L Sbjct: 68 LQLVQWLRGQEQFKNLPILVATSHGDREYIDEIMAAGANGVLPKPFTAEEL 118 >gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 209 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E+V NG A+ VR E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEAFTFVRTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRIKQYDETIKILILSSFS 86 >gi|160889191|ref|ZP_02070194.1| hypothetical protein BACUNI_01612 [Bacteroides uniformis ATCC 8492] gi|156861198|gb|EDO54629.1| hypothetical protein BACUNI_01612 [Bacteroides uniformis ATCC 8492] Length = 1310 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD DMR +L+ +L + Y+VV+ +G A + RE ++++DIVMP ++G EL Sbjct: 1068 LLLAEDDADMREYLVDSL-SSEYKVVAVPDGGKALETAREINPDIIISDIVMPVLEGDEL 1126 Query: 65 AR 66 R Sbjct: 1127 CR 1128 >gi|149919982|ref|ZP_01908457.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Plesiocystis pacifica SIR-1] gi|149819255|gb|EDM78689.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Plesiocystis pacifica SIR-1] Length = 513 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60 ++L+ +D+ ++R+ L L + GYEV++ +GASA +V+ P F ++++D+ MP MD Sbjct: 7 RVLVVDDEPNLRKVLGALLMQLGYEVLTEPDGASALARVKSAPRGTFDVVISDLRMPNMD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+ L T D L V+ +T V + L KPF RD ++ + Sbjct: 67 GMALLEALTAEDSSLPVIILTAHGTVDTAVQAVKKGAFDFLEKPFE-RDQIDHL 119 >gi|153954745|ref|YP_001395510.1| hypothetical protein CKL_2127 [Clostridium kluyveri DSM 555] gi|219855209|ref|YP_002472331.1| hypothetical protein CKR_1866 [Clostridium kluyveri NBRC 12016] gi|146347603|gb|EDK34139.1| Hypothetical protein CKL_2127 [Clostridium kluyveri DSM 555] gi|219568933|dbj|BAH06917.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 120 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR + L K G+EVV NNG A + ++E ++ DI MP+MDGI Sbjct: 3 KILIVDDAAFMRMMIKDILEKNGFEVVGEANNGIKAVELYKKEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E ++ D K++ + + D+ + KPF ++ +N+++ Sbjct: 63 EAVKQIKAFDASAKIIMCSAMGQQTMVMDAIKAGARDFIVKPFQPDRVLEAINKVVA 119 >gi|110633970|ref|YP_674178.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Mesorhizobium sp. BNC1] gi|110284954|gb|ABG63013.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Chelativorans sp. BNC1] Length = 486 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L +AL + G++V +N A+ + V L++TD+VMP+ + ++ Sbjct: 7 ILVADDDAAIRTVLNQALSRVGHQVRVTSNAATLWRWVAAGEGDLVITDVVMPDENAFDM 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PDL V+ ++ ++ + L KPF L +L+ V R L Sbjct: 67 LPRIRKARPDLPVIVMSAQNTFMTAIRASEAGAYEYLPKPFDLTELLGIVGRAL 120 >gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] Length = 953 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 49/106 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D RR L LG GY VV+ N+G A D +R ++L+D+ MP +DG L Sbjct: 831 LLVVDDHPINRRLLADQLGTMGYIVVTANDGIDALDAMRAHEIDIVLSDVNMPRLDGYGL 890 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + EL L V+ +T A LSKP L L Sbjct: 891 TAKLRELGHTLPVIGVTANALAEQRQRCLEAGMDNCLSKPVTLETL 936 >gi|303240217|ref|ZP_07326737.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592308|gb|EFL62036.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ ED+ + RFL L GY+VV N+G S DK E F LL+ D+++P + Sbjct: 1 MGYRILIIEDELKIARFLELELVHEGYDVVLENDGRSGCDKALAEEFDLLILDLMLPCIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE+ RR + ++ +T V+ + D+ A ++KPF + +L+ + + Sbjct: 61 GIEVCRRIRR-QSQVPIIILTAKDDVSDKVMGLDTGA---NDYMTKPFAIEELLARMRGI 116 Query: 118 L 118 L Sbjct: 117 L 117 >gi|302343588|ref|YP_003808117.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640201|gb|ADK85523.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 483 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +R+ + + L G V+ NG +++ + L+L D++MP MDG+E Sbjct: 8 RILVVDDEERIRQAVRRVLETMGMVVMEAANGREGLERIADYKPDLVLVDLMMPVMDGME 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RA + L + ITG+A + ++ L+KPF ++L + R+L Sbjct: 68 MIGRARKSHASLAFVVITGYATLEKAVEAMKQGADDFLAKPFKPQELRLVIERVL 122 >gi|295115280|emb|CBL36127.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 254 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS------CNNGASAYDKVREEPFSLLLTDIVMP 57 K+++A+D+ + R L++ALG +E + NG A + + E +L+TDI MP Sbjct: 3 KVIIADDERLICR-LVQALGD--WEALDMEVAGLAENGLEALELIERERPDILITDIRMP 59 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG+EL RRA EL P+L+++ I+G+A + L KP +L+ + ++ Sbjct: 60 GCDGLELIRRAKELRPELEIVIISGYAHFEYAQTAIRYGVGNYLLKPIKKDELMETLRKM 119 >gi|294508093|ref|YP_003572151.1| sensory box sensor histidine kianse/respons regulator [Salinibacter ruber M8] gi|294344421|emb|CBH25199.1| sensory box sensor histidine kianse/respons regulator [Salinibacter ruber M8] Length = 941 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 49/81 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ + + L AGYEV + + A+A + +E L++TD+ MPEM G++ Sbjct: 820 QVLVVDDEEFVLESAQQTLEAAGYEVRTALDAAAALRVMEKEAIDLVITDLRMPEMSGLD 879 Query: 64 LARRATELDPDLKVMFITGFA 84 L RR E PDL ++ +G A Sbjct: 880 LIRRLQERHPDLPIVAASGVA 900 >gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 222 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R + L +GY V+S NG A + V + L++TDI MPEMDG EL Sbjct: 5 LLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKHQPHLIVTDIAMPEMDGFEL 64 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R+ + L V+F+T + L KPF L +L Sbjct: 65 VKRVRSQPIFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEEL 112 >gi|288957010|ref|YP_003447351.1| two-component response regulator [Azospirillum sp. B510] gi|288909318|dbj|BAI70807.1| two-component response regulator [Azospirillum sp. B510] Length = 124 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DDD + R L++A L + G+E+ C + A + E F L+LTDI+MP+ DG E+ Sbjct: 4 LLVVDDDPVTRNLVRAILTREGHELTLCASAPEAIGILYVERFDLVLTDIIMPDHDGFEV 63 Query: 65 ARRATELDPDLKVMFITGF 83 + A L P++ ++ ++ Sbjct: 64 IQAARSLRPEMPIVILSAI 82 >gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family [Bacillus pseudofirmus OF4] Length = 229 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ MR L L K GY V G A +KV + +S++L D++MPEMDG E Sbjct: 5 RILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVMMPEMDGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + R ++ + V+ +T A + K K+ L+KPF +L+ V +L Sbjct: 65 VCREIRKV-SQVPVIMLT-----ARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVL 118 >gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1356 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 11 DDDMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIELARR 67 DDDMR L L + G +VV +G+ + ++RE P L+L DI+MP MDG E A R Sbjct: 1241 DDDMRNIFALTSVLEEKGMQVVVARDGSESLTRLRENPEIDLVLMDIMMPVMDGYE-AMR 1299 Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 DP LK + I A A+ D NA A L+KP + L++ Sbjct: 1300 EIRKDPKLKDLPIIALTAKAMKGDKNACIEAGANDYLAKPVDMDKLLS 1347 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 6 LLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DDD ++R I+AL G E V+ +GA A ++ + F ++ D+ + +M G ++ Sbjct: 1091 LLVVDDDALQRESIRALIGNGDVETVTAASGAEALGLLKSQNFDCMILDLGLNDMSGFDV 1150 Query: 65 AR--RATELDPDLKVMFITG 82 R R+ L V+ TG Sbjct: 1151 LRTLRSGPTPSTLPVVVYTG 1170 >gi|60683477|ref|YP_213621.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60494911|emb|CAH09722.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1307 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ ++R +LI++ + +V + +N SA + R++ S++++D++MP+MDG Sbjct: 1054 KTILIVEDEKELREYLIESFTETFKKVYAADNAISALETCRKKQPSIIVSDVMMPQMDGF 1113 Query: 63 ELARRATELDPDLKVMFI 80 EL R ++ D+++ I Sbjct: 1114 ELCR---QIKNDIRISHI 1128 >gi|53715519|ref|YP_101511.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|52218384|dbj|BAD50977.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] Length = 1307 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ ++R +LI++ + +V + +N SA + R++ S++++D++MP+MDG Sbjct: 1054 KTILIVEDEKELREYLIESFTETFKKVYAADNAISALETCRKKQPSIIVSDVMMPQMDGF 1113 Query: 63 ELARRATELDPDLKVMFI 80 EL R ++ D+++ I Sbjct: 1114 ELCR---QIKNDIRISHI 1128 >gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161] gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 225 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] gi|300074553|gb|ADJ63952.1| PAS/PAC sensor hybrid histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 552 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 + IL+ +D ++ L GY V N+ A A +R P LL TD++MP M Sbjct: 428 QEHILVVDDRLEVAELAQTMLESLGYRVSMVNSPAEALQLIRSGRPVDLLFTDLIMPGSM 487 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +KV+ TG+A+ +L A VL KP+ +L ++ +L Sbjct: 488 NGVVLAREAKRMLPTIKVLLTTGYASESLE-RHGADGEFPVLDKPYRHDELARKIRIVL 545 >gi|268319166|ref|YP_003292822.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|262397541|emb|CAX66555.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 221 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED++ + R L+ A+ Y V NG A + R+ + +++ DI+MP MDGI Sbjct: 2 KILIAEDEEQLSRVLVAAMQSVNYGVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + + V+ +T A V DS A L+KPF L++L+ Sbjct: 62 ALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGAD---DYLTKPFSLKELL 109 >gi|257870716|ref|ZP_05650369.1| two component transcriptional regulator [Enterococcus gallinarum EG2] gi|257804880|gb|EEV33702.1| two component transcriptional regulator [Enterococcus gallinarum EG2] Length = 217 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 12/119 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ + L+K+L K GY + +G SA D + L+L DI++PE+ G EL Sbjct: 3 VLIVEDNQAINNLLVKSLAKKGYRTIPIFDGKSAADYIENHEVDLILLDIMLPEISGDEL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 E D+ V+F+T A N + + K+ ++KPF L +L V +L Sbjct: 63 IDYFVEF--DIPVIFLT-----AKNTLHDKVRGLKLGAEDYITKPFELEELFARVETVL 114 >gi|256829811|ref|YP_003158539.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256578987|gb|ACU90123.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 120 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 54/108 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ D L+K + + G++V +G A + +E F +++ D++MP MDGIE Sbjct: 1 MLVVDDEQDFVETLVKRMERRGFKVTGVGSGQEALLLLGKEHFDVIILDVMMPGMDGIET 60 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 R P ++V+ ++G + A L KP L+ +V Sbjct: 61 LREIKLAWPKIQVILLSGHGGEEMGIRGMAYGAYAYLLKPVALKTIVE 108 >gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] Length = 224 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 4/125 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ EDD + R + L G+++ N+G + F L+L D+++P+M+ Sbjct: 1 MKEKILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGLLAAKYNHFDLILLDVMLPKMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL-- 118 G E+ +R E D D+ ++F+T + S ++KPF +L+ V LL Sbjct: 61 GFEVCKRIRE-DSDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRR 119 Query: 119 -TIKN 122 T+KN Sbjct: 120 STLKN 124 >gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 254 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L +L GY V + +G +A +V L+L D++MP MDG+ Sbjct: 15 EVLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLT 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR DP L V+ +T A L D A +A L+KPF L +L+ V LL Sbjct: 75 ACRRLRTADPTLPVLMLT---ARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALL 129 >gi|262198710|ref|YP_003269919.1| Fis family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082057|gb|ACY18026.1| two component transcriptional regulator, Fis family [Haliangium ochraceum DSM 14365] Length = 180 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 54/106 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD+ RR L +A + GY+V + + A + R + L + D+ MP G+EL Sbjct: 7 ILIVDDDEVFRRRLGRAFEERGYDVRTASEYEEAVQEARRDSPELAVVDLRMPGHSGLEL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + ++DP K + +TG+ ++A D+ L KP DL Sbjct: 67 VKALKDIDPTTKTVVLTGYGSIATAIDAMRLGAHYYLPKPADADDL 112 >gi|227538841|ref|ZP_03968890.1| two-component system sensor histidine kinase/response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241350|gb|EEI91365.1| two-component system sensor histidine kinase/response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 1315 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+ ++ +L K L K Y ++ NGA A D + L+LTDI+MP MDG+ L Sbjct: 1062 ILLVEDNKEILAYLNKEL-KVSYTILRATNGAEALDILDSNNVQLVLTDIMMPVMDGLAL 1120 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +R L + V+F+T A+ + + KPF + L+ ++ T+KN Sbjct: 1121 CKRIKSDILYSHIPVIFLTAKNALEAKIEGIKIGADAYIEKPFSMEYLLVQIRN--TLKN 1178 >gi|289582526|ref|YP_003480992.1| response regulator receiver protein [Natrialba magadii ATCC 43099] gi|289532079|gb|ADD06430.1| response regulator receiver protein [Natrialba magadii ATCC 43099] Length = 118 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D MR L + L + V NG A + +EE ++ DIVMP DGIE Sbjct: 3 VLITDDSGFMRDLLREILEEDHTIVGEAENGVEAVELYQEEQPDIVFMDIVMPIKDGIEA 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 T++DP+ KV+ T DS ++KPF ++ E+N + Sbjct: 63 TDEITDMDPNAKVVMCTSVEQAEQMKDSIKAGAEGYITKPFQKESVLEELNSI 115 >gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] Length = 228 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L L + GY + +GA R F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEQRVADLLRVGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +P + ++ +T + D + KPF R+L + LL K Sbjct: 64 CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRK 120 >gi|146291410|ref|YP_001181834.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|145563100|gb|ABP74035.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 1196 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 15/118 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +D R L + L G+ V NNG A R+ P+ ++LTD MP MDG Sbjct: 959 QHILIVDDHSANRLLLSQQLRYLGHSVDEANNGLEAIQLFRQHPYRIVLTDCNMPIMDGY 1018 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK----------VLSKPFHLRDL 110 E +RR + + + + AAV L +NA AK L KP L DL Sbjct: 1019 EFSRRLRQFEQNNNLP-----AAVVLGYTANAQLEAKQACIDAGMNDCLFKPISLEDL 1071 >gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816] gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes str. Scott A] Length = 225 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|330806980|ref|YP_004351442.1| two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375088|gb|AEA66438.1| Putative two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 463 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +++ ++ + ++++DI MP MDG+E Sbjct: 8 EVVLIDDDPHLRQALSQTLDLAGLKILPLAEAKGVAAQLPRDWPGVVVSDIRMPGMDGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L DP+L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 68 LLGELHAQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDHLLDSVRRALALR 125 >gi|313897315|ref|ZP_07830858.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium sp. HGF2] gi|312957685|gb|EFR39310.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium sp. HGF2] Length = 226 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 14/126 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+D++R+ + L KA +++V C +G +A D +E F +L+ D ++P + GI+ Sbjct: 3 RILLIEDEDNIRKIIAYDLKKADFDIVECGDGRTAVDLAMKEDFDVLIIDWMLPHVSGID 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ D + +T A D ++KPF R+L+ VN Sbjct: 63 IVKKLRSEHIDAIFIMLTARDDETDILYAFEQGVDD-------YITKPFSPRELLARVNA 115 Query: 117 LLTIKN 122 L +N Sbjct: 116 HLKRQN 121 >gi|317056581|ref|YP_004105048.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448850|gb|ADU22414.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 223 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 46/78 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ R + L +G+ C + AY+++ + L+++DI+MP+MDG E Sbjct: 4 ILVVDDDKDLNRLVCSYLNDSGFSAKGCLSVGDAYNEMYANLYDLIISDIMMPKMDGFEF 63 Query: 65 ARRATELDPDLKVMFITG 82 A L+ ++ ++F++ Sbjct: 64 AETIRRLNANIPIIFLSA 81 >gi|316933561|ref|YP_004108543.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315601275|gb|ADU43810.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 686 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + L GY + ++ ++ + LL+TD+ +P M+ Sbjct: 567 ETVMVVDDEPTVRMLVADVLEDLGYSALEASDSVGGLKLLQSDARIDLLVTDVGLPGGMN 626 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A ++ P L V+FITGFA AL + VL+KPF + L + L+ Sbjct: 627 GRQLADAARQIRPGLNVLFITGFAENALLNNGQLEPGMAVLTKPFAVDTLAARIRELI 684 >gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 946 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ V+ N+G A + + ++ ++L+D+ MP MDG L Sbjct: 825 ILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVLSKQHIDIVLSDVNMPNMDGYRL 884 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 885 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 927 >gi|224367972|ref|YP_002602135.1| sensory histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223690688|gb|ACN13971.1| sensory histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 525 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 1/105 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L+ +D+ + + G +V + +NG A + PF ++L+DI M +M+ Sbjct: 18 MEKRLLIVDDEPRLTKSFKVIFENRGIDVQTASNGHDAIKIFKNHPFKVVLSDIHMDKMN 77 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKP 104 GIE+ ++D ++++F+TG+A + D+ NA + L KP Sbjct: 78 GIEMMHALKKIDSCVQIIFLTGYANLETAADALKQNNAFEYLVKP 122 >gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1313 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ ++ ++ L + GY + +NG A + + L+L D+ MPEMDG+E Sbjct: 1185 ILLAEDNTVNQKVALRFLERLGYRADAVSNGQEAVTTLAARHYHLVLMDLQMPEMDGLEA 1244 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +R+ + P + I A A+ D A + +SKP L ++ + RL Sbjct: 1245 SRQIRKKVPASRQPKIVALTANAMQGDRERCLEAGMDDYISKPVKLHEIEAAIRRLF 1301 >gi|157146331|ref|YP_001453650.1| hypothetical protein CKO_02089 [Citrobacter koseri ATCC BAA-895] gi|157083536|gb|ABV13214.1| hypothetical protein CKO_02089 [Citrobacter koseri ATCC BAA-895] Length = 415 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 51/100 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L +AGY V CNN A + V+++ ++L+D+ MP GI+L Sbjct: 8 ILLIDDDADVLDAYTQLLEQAGYRVCVCNNPFDAREWVQKDWPGIVLSDVCMPGCSGIDL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 + D L ++ ITG V + D+ L KP Sbjct: 68 MTLFHQDDEQLPILLITGHGDVPMAVDAVKKGAWDFLQKP 107 >gi|91216473|ref|ZP_01253439.1| two-component system, transcriptional regulatory protein [Psychroflexus torquis ATCC 700755] gi|91185267|gb|EAS71644.1| two-component system, transcriptional regulatory protein [Psychroflexus torquis ATCC 700755] Length = 240 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 10/126 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L Y+V NG ++K ++ + L + D++MP DG Sbjct: 5 NKKILLVEDDPNFGIVLKDYLSMNSYDVTHAKNGMEGFEKFKKGNYDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 LA+ + D+ ++F+T A A+ D K KV L+KPF L+ ++ Sbjct: 65 FTLAKEIRAKNEDIPIIFLT---AKAMKDD--VLKGYKVGADDYLNKPFDSEVLLMKIKA 119 Query: 117 LLTIKN 122 ++ KN Sbjct: 120 IMQRKN 125 >gi|83648472|ref|YP_436907.1| chemotaxis protein histidine kinase-like kinase [Hahella chejuensis KCTC 2396] gi|83636515|gb|ABC32482.1| Chemotaxis protein histidine kinase and related kinase [Hahella chejuensis KCTC 2396] Length = 1151 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D +R L + L G+EVV+ ++G A +K+R +LLL D+ MP MDG+E Sbjct: 1034 KILVVDDSLSVRSTLKQLLQDCGFEVVTASDGLDAVEKLRHITPNLLLVDMEMPRMDGLE 1093 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R R + ++ V+ +T + ++ +KP++ +L++ + LLT Sbjct: 1094 LTRHLRQQQDWANMPVVMLTSRSHEKHRSLAHKAGVTAYATKPYNDNELMDTIRELLT 1151 >gi|1705849|sp|Q07783|CHVI_RHIRD RecName: Full=Transcriptional regulatory protein ChvI gi|304125|gb|AAA03553.1| putative [Agrobacterium tumefaciens] Length = 241 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I L +DD ++ + AL + GY V + +GASA D + P L + DI MP MDG+ Sbjct: 2 QTIALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDGM 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR + D+ V+F+T + + D ++KPF R LV V Sbjct: 62 ELLRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVK 113 Query: 116 RLL 118 +L Sbjct: 114 AIL 116 >gi|17549628|ref|NP_522968.1| putative chemotaxis response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431882|emb|CAD18560.1| putative chemotaxis response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|299069795|emb|CBJ41075.1| chemotactic response regulator, transmits chemoreceptor signals to flagelllar motor components [Ralstonia solanacearum CMR15] Length = 137 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 6/124 (4%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVM 56 M++K IL+ +D +RR + L G+ V +GA+A + V+ + L++TD VM Sbjct: 1 MSEKHILVVDDSTSIRRMIATCLRACGFAVTEATDGAAALEAVQRQADGSHHLVITDQVM 60 Query: 57 PEMDGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 P MDG+ L R R D ++ +T A + + A L KPF L + V Sbjct: 61 PAMDGLTLIRALRTLPAYADTPILMLTTEADSTIRDQARAAGATGFLPKPFDPDGLTDSV 120 Query: 115 NRLL 118 +LL Sbjct: 121 MQLL 124 >gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Klebsiella sp. 1_1_55] gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Klebsiella sp. 1_1_55] Length = 946 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ V+ N+G A + + ++ ++L+D+ MP MDG L Sbjct: 825 ILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVLSKQHIDIVLSDVNMPNMDGYRL 884 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 885 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 927 >gi|284036649|ref|YP_003386579.1| histidine kinase [Spirosoma linguale DSM 74] gi|283815942|gb|ADB37780.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1343 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDDDD+ F++ L + V+ NNG + + L+++D++MPE++G EL Sbjct: 1091 ILLAEDDDDIASFILTTLSTE-WRVLRVNNGKAGLEAAIMNGPDLIISDVLMPELNGYEL 1149 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-NRL 117 R ++ + + ++ +T + + L+KPF + +L + NRL Sbjct: 1150 CRQLKSNPITSHIPILLLTAKVSAESRLEGLNAGADDYLAKPFQVNELRARIRNRL 1205 >gi|27380375|ref|NP_771904.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27353539|dbj|BAC50529.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 509 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIE 63 +LL ED+ D+ I L + GY V + SA ++ + + +DIVMP +MDG+ Sbjct: 398 VLLVEDNPDVAIVSIGLLEQLGYRVRRVPDAESALRELEQNGVDFVFSDIVMPGKMDGLT 457 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 LA + P L ++ TG++ A + + P +L KP+ + +L + +L Sbjct: 458 LAHHLRLIRPGLPILLATGYSEAAADVRGDFP----ILRKPYEIHELSEAIAKL 507 >gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 229 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 2/80 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +DD ++ L + GYE VS NG A K+R +P SL++ DI+MPEMDG+ Sbjct: 2 KILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRTDPDISLMILDIMMPEMDGM 61 Query: 63 ELARRATELDPDLKVMFITG 82 ++ R + D L ++ ++ Sbjct: 62 QVVREVRK-DSSLPILMLSA 80 >gi|326387405|ref|ZP_08209014.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208061|gb|EGD58869.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 263 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILL EDD +R +AL GY+V + + GA + + L++ DI++P GI Sbjct: 32 KSILLVEDDPALRLLTARALRAHGYDVGTASTGAEMWVALESGAVDLIVLDIMLPGQTGI 91 Query: 63 ELARRATELDPDLKVMFITGFAA-------VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR D D+ V+FI+ + + L D P KPF R+L+ + Sbjct: 92 ELFRRLRR-DSDVPVIFISARGSEDDRVLGLELGADDYLP-------KPFGTRELIARIG 143 Query: 116 RLL 118 +L Sbjct: 144 AVL 146 >gi|319902883|ref|YP_004162611.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319417914|gb|ADV45025.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 1338 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+D++R +L L + Y + C+NG A V E L+++DI+MPEM G E Sbjct: 1083 KILIVEDNDELREYLRNTLSET-YHIQVCSNGKMALAIVNEYLPHLIISDIMMPEMRGDE 1141 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L + L +++ I ALN D N + + + KPF++ L + LL Sbjct: 1142 LCQ---TLKNNIETSHIPIILLTALNADKNIIEGLQTGADEYIVKPFNIGILRATIANLL 1198 >gi|300694371|ref|YP_003750344.1| chemotactic response regulator, transmits chemoreceptor signals to flagelllar motor components [Ralstonia solanacearum PSI07] gi|299076408|emb|CBJ35724.1| chemotactic response regulator, transmits chemoreceptor signals to flagelllar motor components [Ralstonia solanacearum PSI07] Length = 137 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 6/124 (4%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVM 56 M++K IL+ +D +RR + L G+ V +GA+A + V+ + L++TD VM Sbjct: 1 MSEKHILVVDDSTSIRRMIATCLRACGFAVTEATDGAAALEAVQRQTDGSHHLVITDQVM 60 Query: 57 PEMDGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 P MDG+ L R R D ++ +T A + + A L KPF L + V Sbjct: 61 PAMDGLTLIRALRTLPAYADTPILMLTTEADSTIRDQARAAGATGFLPKPFDPDGLTDSV 120 Query: 115 NRLL 118 +LL Sbjct: 121 MQLL 124 >gi|183222106|ref|YP_001840102.1| putative two-component signal transduction system [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912169|ref|YP_001963724.1| CheY-like receiver domain-containing response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776845|gb|ABZ95146.1| Response regulator containing CheY-like receiver domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780528|gb|ABZ98826.1| Putative two-component signal transduction system [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 416 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 47/80 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+AEDD + +L + L + GY+VV +G SA E+PF +++TD MP ++G Sbjct: 4 KRILVAEDDGVLGFYLKQQLSELGYQVVLAKDGKSALASYLEKPFPVVITDYEMPGLNGD 63 Query: 63 ELARRATELDPDLKVMFITG 82 EL D + +M ITG Sbjct: 64 ELISSLKIGDVEPVIMMITG 83 >gi|160936693|ref|ZP_02084060.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC BAA-613] gi|158440484|gb|EDP18229.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC BAA-613] Length = 1071 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMD 60 ++LL ED++ R ++ LG G E+ + NG A +++ R +SL+L DI MP M+ Sbjct: 948 QVLLVEDNELNREIALELLGGFGMELEAAVNGREALKRFEESRPGYYSLILMDIQMPVMN 1007 Query: 61 GIELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 G E AR L D K + I A A D K A + L+KP + LV E+ + Sbjct: 1008 GYEAARAIRSLSREDAKTVPILAMTADAFVEDIENTKAAGMNGHLAKPLDFKQLVREIGQ 1067 Query: 117 LLTI 120 L + Sbjct: 1068 YLHV 1071 >gi|149372308|ref|ZP_01891496.1| two-component system, transcriptional regulatory protein [unidentified eubacterium SCB49] gi|149354698|gb|EDM43261.1| two-component system, transcriptional regulatory protein [unidentified eubacterium SCB49] Length = 238 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 10/110 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N+KILL EDD + L L Y V NG ++K +++ + L + D++MP D Sbjct: 4 VNKKILLVEDDPNFGTVLKDYLAMNDYNVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 G LA+ E + ++ ++F+T A A+ D K KV L+KPF Sbjct: 64 GFTLAKEIREKNAEVPIIFLT---AKAMKED--VLKGYKVGADDYLNKPF 108 >gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola DG893] gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola DG893] Length = 1054 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 8/121 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D L LG GY+V C+ G A + V + + L+ D+++P++ G++ Sbjct: 816 RILIVEDDPDAAELLKIMLGGVGYQVAVCHTGLEALEAVNKGDYDLISLDLILPDIGGLD 875 Query: 64 LARRATELDPDLKVMFITGFAAVA-----LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E + + A V LN ++N N L KP + L++ V L Sbjct: 876 IIRRLKEHADTANIPIVVVSAKVKQGKLELNGEAN---NIAWLPKPIQHQKLIDLVQHQL 932 Query: 119 T 119 + Sbjct: 933 S 933 >gi|148559307|ref|YP_001258597.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|225627111|ref|ZP_03785149.1| DNA-binding response regulator [Brucella ceti str. Cudo] gi|254701398|ref|ZP_05163226.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513] gi|254707679|ref|ZP_05169507.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10] gi|254709738|ref|ZP_05171549.1| DNA-binding response regulator [Brucella pinnipedialis B2/94] gi|254713741|ref|ZP_05175552.1| DNA-binding response regulator [Brucella ceti M644/93/1] gi|254717201|ref|ZP_05179012.1| DNA-binding response regulator [Brucella ceti M13/05/1] gi|254718753|ref|ZP_05180564.1| DNA-binding response regulator [Brucella sp. 83/13] gi|256031228|ref|ZP_05444842.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1] gi|256159331|ref|ZP_05457121.1| DNA-binding response regulator [Brucella ceti M490/95/1] gi|256254636|ref|ZP_05460172.1| DNA-binding response regulator [Brucella ceti B1/94] gi|256369043|ref|YP_003106551.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260168364|ref|ZP_05755175.1| DNA-binding response regulator [Brucella sp. F5/99] gi|261219017|ref|ZP_05933298.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221811|ref|ZP_05936092.1| FeuP [Brucella ceti B1/94] gi|261315175|ref|ZP_05954372.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317269|ref|ZP_05956466.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321483|ref|ZP_05960680.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261751937|ref|ZP_05995646.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757824|ref|ZP_06001533.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99] gi|265983731|ref|ZP_06096466.1| DNA-binding response regulator [Brucella sp. 83/13] gi|265988307|ref|ZP_06100864.1| FeuP [Brucella pinnipedialis M292/94/1] gi|265997775|ref|ZP_06110332.1| FeuP [Brucella ceti M490/95/1] gi|306838729|ref|ZP_07471564.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|306842126|ref|ZP_07474795.1| two component transcriptional regulator [Brucella sp. BO2] gi|306845210|ref|ZP_07477786.1| two component transcriptional regulator [Brucella sp. BO1] gi|148370564|gb|ABQ60543.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|225617946|gb|EEH14990.1| DNA-binding response regulator [Brucella ceti str. Cudo] gi|255999203|gb|ACU47602.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260920395|gb|EEX87048.1| FeuP [Brucella ceti B1/94] gi|260924106|gb|EEX90674.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294173|gb|EEX97669.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296492|gb|EEX99988.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261304201|gb|EEY07698.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261737808|gb|EEY25804.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99] gi|261741690|gb|EEY29616.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262552243|gb|EEZ08233.1| FeuP [Brucella ceti M490/95/1] gi|264660504|gb|EEZ30765.1| FeuP [Brucella pinnipedialis M292/94/1] gi|264662323|gb|EEZ32584.1| DNA-binding response regulator [Brucella sp. 83/13] gi|306274369|gb|EFM56176.1| two component transcriptional regulator [Brucella sp. BO1] gi|306287713|gb|EFM59144.1| two component transcriptional regulator [Brucella sp. BO2] gi|306406216|gb|EFM62460.1| two component transcriptional regulator [Brucella sp. NF 2653] Length = 229 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L +A+ AGY V S +G + EP+ ++ DI +P+MDGI Sbjct: 2 RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGAD---DYVAKPFHIEEVLARLRALI 116 >gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 498 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D RFL K L GY V +G + P +L+L DI+MP+MDG E Sbjct: 10 KILIVDDQPSNLRFLSKILTDQGYNVKRAISGQLGLNAALGSPPNLILLDIMMPDMDGYE 69 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ ++ + ++F++G V + ++KPF + +++ ++ + ++ Sbjct: 70 LCQKLKSMESTRSVPIIFLSGLDDVQYKIKAFQVGGVDYITKPFQVEEVLARIDTQIALQ 129 >gi|296160973|ref|ZP_06843785.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295888862|gb|EFG68668.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 782 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 5/108 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD + + L G+E ++ A + ++ F +L+ D+ MP M GIE Sbjct: 670 RVLLVDDDPESTEAIGALLKMLGHEPAMTDSPEQALNWLKTGSFDILIADLTMPAMPGIE 729 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDL 110 LA++A L P+L+V+F +G PD K L KP+ L DL Sbjct: 730 LAQKAVGLRPELRVVFASGREM----PDVPGLDFVWKSLRKPYALEDL 773 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ EDD ++ ++ L GY V+ ++ A +R L+ TD+VMP + Sbjct: 528 ETVLVVEDDRKVQSTVVDTLSGLGYSVLKADDAEQALAVIRSGVHIDLVFTDVVMPGPLR 587 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A +A + P LKV+F +G+ A+ ++LSKP+ L ++ +LL Sbjct: 588 SPDMAAQALQFLPRLKVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREQLAYKIRQLL 645 >gi|227494938|ref|ZP_03925254.1| response regulator [Actinomyces coleocanis DSM 15436] gi|226831390|gb|EEH63773.1| response regulator [Actinomyces coleocanis DSM 15436] Length = 226 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 12/119 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++L EDD + L +AL + GY+V S + GA+A +V E L + D+ +P+MDG+++ Sbjct: 4 VILVEDDSAIAEPLARALSREGYDVRSHDTGAAALTEV--EAADLFILDLGLPDMDGLDV 61 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR +L ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 62 ARHVRKLGKTTPILILTARADEIDMVVGLDAGAD-----DYVTKPFRLAELLARVRALL 115 >gi|145609714|ref|XP_001409714.1| hypothetical protein MGG_12530 [Magnaporthe oryzae 70-15] gi|145017112|gb|EDK01475.1| hypothetical protein MGG_12530 [Magnaporthe oryzae 70-15] Length = 1220 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 15/129 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE------EPFSLLLTDIVMP 57 + LL +D+ + L+ K G NG A++ RE + F +LTDI MP Sbjct: 1092 RFLLVDDNPINLKILVSYAKKLGRRFACATNGLEAFEAFRESIGQGADAFKFVLTDISMP 1151 Query: 58 EMDGIELARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 MDG E RR L+ P + +TG A+ ++ A +L+KP L+ Sbjct: 1152 VMDGFESTRRMRSLEMERGLPRCNIFALTGLASAGAQEEAFASGIDLLLTKPVRLK---- 1207 Query: 113 EVNRLLTIK 121 E+N++L K Sbjct: 1208 ELNKILESK 1216 >gi|126659636|ref|ZP_01730766.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126619082|gb|EAZ89821.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 377 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L + GY+V NG +A + + + P L+L DI MP M+G E+ Sbjct: 8 ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIHQVPADLILLDINMPSMNGYEV 67 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++ DP D+ ++FI+ V + ++KPF +++ + LTI+ Sbjct: 68 CQQLKN-DPITQDIPIIFISALDDVLDKVKAFDLGGVDYITKPFQAEEVIARIENQLTIQ 126 >gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAEGHGFPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|302345209|ref|YP_003813562.1| PglZ domain protein [Prevotella melaninogenica ATCC 25845] gi|302149913|gb|ADK96175.1| PglZ domain protein [Prevotella melaninogenica ATCC 25845] Length = 538 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L +D+ ++ + I L K GYEVV+ +NG A D+ + + F L+L D MP + G Sbjct: 3 NGLLLWVDDEIELLKAHIIFLEKKGYEVVTVSNGTDAIDQCQTQTFDLVLLDEQMPGLSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E +R E+ P ++ +T + + K A L KP VN LLT+K Sbjct: 63 LETLQRIKEIQPATPIVMVTKSEEEDIMNQAIGAKIADYLIKP------VNPNQILLTLK 116 >gi|256831227|ref|YP_003159955.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256580403|gb|ACU91539.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 126 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N ++L+ +D MRR + L + G+ ++ ++G +A++ + ++ +++D MP+M Sbjct: 6 NMRVLIVDDFSTMRRIIKNILRQLGFNNIIEADDGTAAWEILTKDQVDFIISDWNMPQMT 65 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RA+E DL + +T A ++ K + + KPF L ++N++ Sbjct: 66 GIELLRKVRASEEFGDLPFLMVTAEAQQENIIEAVQAKVSNYIVKPFTAETLGQKINKIF 125 >gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 222 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R + L +GY V+S NG A + V + L++TDI MPEMDG EL Sbjct: 5 LLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKHQPHLIVTDIAMPEMDGFEL 64 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R P + V+F+T + L KPF L +L Sbjct: 65 VKRVRS-QPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDEL 112 >gi|220907164|ref|YP_002482475.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219863775|gb|ACL44114.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 126 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++KIL+A+DDDD R L L G++VV +G A + V E +L+ D MPE+ Sbjct: 7 ISRKILIADDDDDSRLMLKFILENEGWQVVEARDGKEALEMVWAEQPQVLILDNRMPELT 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G E+ + L V+ T +A L + + + +SKPF + +L+ +VN Sbjct: 67 GTEVYQCIQAQGLSLPVILATAYA--ELKEFALSLGISYFISKPFDMAELLCKVN 119 >gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 225 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAEGHGFPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20] gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++++ +F+ L GYEV + +G S D E + ++L D+++PE++G+E Sbjct: 3 KVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLMLPELNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR E ++ +T +V L KPF + +L+ + LL Sbjct: 63 VARRLRE-SKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLL 116 >gi|149200166|ref|ZP_01877189.1| sigma-54 dependent transcriptional regulator/response regulator [Lentisphaera araneosa HTCC2155] gi|149136703|gb|EDM25133.1| sigma-54 dependent transcriptional regulator/response regulator [Lentisphaera araneosa HTCC2155] Length = 463 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L +AL K +E + +NG A + P ++LTD+ MP M+GI Sbjct: 4 KKILIVDDEIHTCQGLARAL-KYEWETFTASNGKEAIKIFEDNPVDIILTDVKMPGMNGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 EL R+ + P+ + ++ + D+ ++KPF L DL Sbjct: 63 ELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDL 110 >gi|124516214|gb|EAY57722.1| putative response regulator receiver protein [Leptospirillum rubarum] Length = 139 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 64/118 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ EDD L + L + G+ V + A ++++ + SL+LTDI MP G Sbjct: 17 RRKVLVVEDDVVALDLLEEILKRGGFGVSVAQSCEEALERLKTDSISLILTDIKMPGKTG 76 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++L + +L P++ V+ +T F L ++ + ++ KPF +++++ V R L+ Sbjct: 77 MDLLKIVQDLYPEVPVVLLTAFGDEHLWVEALSSGAIDLIPKPFRKQEVLDIVQRTLS 134 >gi|153006421|ref|YP_001380746.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029994|gb|ABS27762.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 490 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 56/108 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + R L LG+ GY VV ++ A ++ E F + L DI MP++ G+E Sbjct: 11 RVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLSGLE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L P+++V+ +TG A V + L+KPF +LV Sbjct: 71 LLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELV 118 >gi|86157482|ref|YP_464267.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773993|gb|ABC80830.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 481 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ ++RR L L GY V+ + + ++ EP L + DI +P MDG+ L Sbjct: 8 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLAL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 RA EL DL V+ I+G A + D+ SKP RD V L++++N Sbjct: 68 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVD-RDRV-----LVSVRN 119 >gi|71909424|ref|YP_287011.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849045|gb|AAZ48541.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 963 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ D+R FL L Y V NGA A E+P L++TD++MP DG + Sbjct: 442 RILVVEDNPDLRHFLYDVLID-DYNVTLAANGALALTSALEDPPDLVITDLMMPHFDGEQ 500 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R R + P+L V+ ++ A A L+KPF ++L V L+T+K Sbjct: 501 FVRELRTSGCFPNLPVLVLSARADDAQRETLLEELVQDYLTKPFSPQELRARVRNLVTVK 560 >gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + L GYE+V NG A D RE+ L++ DI MP M+G+E Sbjct: 835 ILLAEDNQANIDTISSYLESRGYEMVLAENGQQALDFAREKCPDLIIMDIQMPGMNGLEA 894 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R R + D+ ++ +T A + A + L+KP L+ LV + +LL Sbjct: 895 IRQIRNEQKFIDIPIIALTALAMPSDRTTCLAAGANEYLTKPIKLKQLVLTIQQLL 950 >gi|84390109|ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01] gi|84376763|gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01] Length = 937 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 6 LLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD+ LI AL K E V+SC +G A DK +E PF ++ DI MP+MDG+ Sbjct: 668 VLAVDDNPANLKLITALLKERVETVISCTSGQKAIDKAKETPFDIIFMDIQMPQMDGVTA 727 Query: 65 ARRATEL--DPDLKVMFITGFAAVA 87 + EL + + V+ +T A V Sbjct: 728 CKNIKELANNANTPVIAVTAHAMVG 752 >gi|116625877|ref|YP_828033.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116229039|gb|ABJ87748.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 131 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDG 61 +LL +D+ +R+ L L + G Y VV+ ++G A D + E +++TD M +M G Sbjct: 14 VLLVDDEPQIRKLLSGLLMRTGDYHVVTASSGEEALDLFGILPERIDIIITDCDMGKMTG 73 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS--NAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IEL +R P+ V+FI+ N DS + +L KPFH R V V +L+ Sbjct: 74 IELYQRIRARRPEAAVLFISA------NADSIRESLPECPLLEKPFHPRQFVARVAEVLS 127 >gi|328542450|ref|YP_004302559.1| PAS protein [polymorphum gilvum SL003B-26A1] gi|326412197|gb|ADZ69260.1| PAS protein [Polymorphum gilvum SL003B-26A1] Length = 652 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 ILL EDD + + + L GY V++ + A R+ P LLTDIVMP +++G+ Sbjct: 535 ILLVEDDAAVAATITEQLQDLGYTVLAAESAEDARSLARDVPEIRALLTDIVMPGQVNGL 594 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LAR + L + +TG+A L D + P VL+KPF R L + +LT Sbjct: 595 ALARAISTERASLGIALMTGYADWSGLGADGSEPP-FPVLAKPFDSRTLAETLRTILT 651 >gi|325288180|ref|YP_004263970.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324323634|gb|ADY31099.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 238 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 48/82 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N+KILL EDD + L LG ++VV NG ++K +++ + + + D++MP D Sbjct: 4 VNKKILLVEDDPNFGIVLKDYLGMNNFDVVLAKNGMEGFEKFKKDIYDVCILDVMMPYKD 63 Query: 61 GIELARRATELDPDLKVMFITG 82 G LAR E + ++ ++F+T Sbjct: 64 GYTLAREIREKNENVPIVFLTA 85 >gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 224 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 57/118 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED++D+R L K L K Y C NG A D + + ++ DI++P ++G+E Sbjct: 2 RLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGLNGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ E D V+F+T + L KPF +L+ V ++ K Sbjct: 62 LLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRK 119 >gi|239820253|ref|YP_002947438.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus S110] gi|239805106|gb|ACS22172.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus S110] Length = 699 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVM-PEMD 60 +++L EDD ++RR + L G VV+ N A + + F +LL+DI + M Sbjct: 577 RVMLVEDDAEVRRVVHTFLATLGCSVVTAANAEQALLSMETDADSFDVLLSDIALGAGMR 636 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G LA A + P L ++ ++GF++ L+ D + P+ ++L KP+ Sbjct: 637 GTRLAAEAQQRFPRLAILLMSGFSSELLDADRDVPQGWELLRKPY 681 >gi|254465333|ref|ZP_05078744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Rhodobacterales bacterium Y4I] gi|206686241|gb|EDZ46723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Rhodobacterales bacterium Y4I] Length = 771 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEP---FSLLLTDIVMPEM 59 +LL ED+ +R F +AL GY V+ SA D +R E+P + +TD+VMP M Sbjct: 655 VLLVEDEAPVRAFASRALRMRGYTVLEAE---SAEDALRTLEDPGLTVDVFVTDVVMPGM 711 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG R A + PD +V+F++G+A A N+ L KPF L L V+ L Sbjct: 712 DGPSWVREALKERPDTRVVFVSGYAEGAFGEAQPEVPNSVFLPKPFSLNQLTETVHAQL 770 >gi|167629012|ref|YP_001679511.1| response regulator receiver domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167591752|gb|ABZ83500.1| response regulator receiver domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 128 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +L+ +D +RR L +A G V +GA A +K+ +SL+L D+ MP M G Sbjct: 4 SRWVLVVDDQKGVRRLLYEAFHLVGVPVEVAASGAEALEKLGRREYSLMLLDVRMPAMTG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +E A L V+ ++ + ++L ++ A L KPF + +L ++ R Sbjct: 64 LEALAEARRRGHRLPVILMSAYEDLSLIKEAGALDILDHLIKPFDVMELTQKITR 118 >gi|218781735|ref|YP_002433053.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763119|gb|ACL05585.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 729 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +K+L +D+ + + K L + GY V + + A + VR +P F +++TD+ MP+M+ Sbjct: 603 EKVLFVDDEPSIVKLGGKMLERLGYTVTTHTSSLQALELVRNKPNGFDIVITDMTMPDMN 662 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-KPFHLRDLVNEVNRLL 118 G LA ++ PD+ V+ TG++ + P+ K + KP +L + ++L Sbjct: 663 GDVLAAELMKIRPDIPVILCTGYSN-KITPEKAMDMGIKAFAMKPLVKSELAKSIRKVL 720 >gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1362 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED ++ + L G+E+ NG+ A ++ + F L+L D+ MPEMDG+E Sbjct: 1082 KILLAEDSLVNQKLALALLKPQGHEIAVVLNGSDAVNERKNREFDLILMDVQMPEMDGLE 1141 Query: 64 LARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R+ E + + + + I A A+ D A + +SKP +R+L + + L Sbjct: 1142 ATRQIREYEQETGEHVPIIAMTAHAMKGDRERCLEAGMDGYVSKPVRVRELFSTIEECL 1200 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-----KVREEPFSLLLTDIVMPE 58 ++L+ +D+ + L + LG + S N G+ A D + + PF L+L D MP Sbjct: 936 RVLIVDDNLTNCQILEEMLGSWNMQTQSINRGSDALDVMHASQQSKHPFDLVLVDANMPV 995 Query: 59 MDGIELAR 66 MDG +A+ Sbjct: 996 MDGFSVAK 1003 >gi|186474996|ref|YP_001856466.1| two component, sigma54 specific, Fis family transcriptional regulator [Burkholderia phymatum STM815] gi|184191455|gb|ACC69420.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia phymatum STM815] Length = 452 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 59/113 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG+EVV + SA + E ++++DI +P G++ Sbjct: 7 QVLYIEDDELVRRASVQSLQLAGFEVVGYASVESAAKLIHAEFSGVIVSDIRLPGASGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L + E P++ V+ +TG +++ + + KPF L+ V R Sbjct: 67 LLAQCRERAPEVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRR 119 >gi|17987620|ref|NP_540254.1| transcriptional regulatory protein PhoP [Brucella melitensis bv. 1 str. 16M] gi|62289566|ref|YP_221359.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699496|ref|YP_414070.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189023825|ref|YP_001934593.1| PhoP family transcriptional regulator [Brucella abortus S19] gi|225852129|ref|YP_002732362.1| winged helix family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|237815063|ref|ZP_04594061.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308 A] gi|254688887|ref|ZP_05152141.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 6 str. 870] gi|254693368|ref|ZP_05155196.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 3 str. Tulya] gi|254697019|ref|ZP_05158847.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254729918|ref|ZP_05188496.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 4 str. 292] gi|256044306|ref|ZP_05447210.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113143|ref|ZP_05454020.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis bv. 3 str. Ether] gi|256257135|ref|ZP_05462671.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 9 str. C68] gi|256264359|ref|ZP_05466891.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2 str. 63/9] gi|260545673|ref|ZP_05821414.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC 8038] gi|260563660|ref|ZP_05834146.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1 str. 16M] gi|260754372|ref|ZP_05866720.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757591|ref|ZP_05869939.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761417|ref|ZP_05873760.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883397|ref|ZP_05895011.1| FeuP [Brucella abortus bv. 9 str. C68] gi|261213618|ref|ZP_05927899.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|265990718|ref|ZP_06103275.1| FeuP [Brucella melitensis bv. 1 str. Rev.1] gi|265994556|ref|ZP_06107113.1| FeuP [Brucella melitensis bv. 3 str. Ether] gi|297247981|ref|ZP_06931699.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|18418609|gb|AAL68973.1|AF007804_1 FeuP [Brucella abortus] gi|17983330|gb|AAL52518.1| transcriptional regulatory protein phop [Brucella melitensis bv. 1 str. 16M] gi|62195698|gb|AAX73998.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82615597|emb|CAJ10584.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Brucella melitensis biovar Abortus 2308] gi|189019397|gb|ACD72119.1| Transcriptional regulatory protein PHOP [Brucella abortus S19] gi|225640494|gb|ACO00408.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis ATCC 23457] gi|237789900|gb|EEP64110.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308 A] gi|260097080|gb|EEW80955.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC 8038] gi|260153676|gb|EEW88768.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1 str. 16M] gi|260667909|gb|EEX54849.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671849|gb|EEX58670.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674480|gb|EEX61301.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872925|gb|EEX79994.1| FeuP [Brucella abortus bv. 9 str. C68] gi|260915225|gb|EEX82086.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|262765669|gb|EEZ11458.1| FeuP [Brucella melitensis bv. 3 str. Ether] gi|263001502|gb|EEZ14077.1| FeuP [Brucella melitensis bv. 1 str. Rev.1] gi|263094652|gb|EEZ18431.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2 str. 63/9] gi|297175150|gb|EFH34497.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] Length = 229 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L +A+ AGY V S +G + EP+ ++ DI +P+MDGI Sbjct: 2 RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGAD---DYVAKPFHIEEVLARLRALI 116 >gi|332702617|ref|ZP_08422705.1| putative PAS/PAC sensor protein [Desulfovibrio africanus str. Walvis Bay] gi|332552766|gb|EGJ49810.1| putative PAS/PAC sensor protein [Desulfovibrio africanus str. Walvis Bay] Length = 498 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL +DD + + + K L AGY V + ++ + P F ++TD++MP + G Sbjct: 370 ILFIDDDAAITKLVCKQLSSAGYIVTAVSDSDEGLRRFSHTPSEFDCVVTDLLMPGLSGQ 429 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+R EL PD+ V+ +G + S+ A + KPF R+L V+ L Sbjct: 430 TLAQRIRELRPDVPVLLCSGNCDLGNLDASSTHCFAGFIPKPFCKRELTQAVSMAL 485 >gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 246 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD + L AG+ V C +G + + ++++E + LL+ DI++P +DG+ Sbjct: 16 KKILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIMLPGLDGL 75 Query: 63 ELARRATELDPDLKVMFIT 81 E+ RR E + D+ V+ ++ Sbjct: 76 EILRRMNE-EKDIPVLLVS 93 >gi|298506540|gb|ADI85263.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 564 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L+ ED+D +R L GY V + + A A KV + L+ TDI++ + Sbjct: 1 MARRVLIVEDEDTLRFTFEHFLAAEGYAVDTAADFAEAIGKVESADYDLVFTDIILGNDN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI++ R E P + V+ ITG+ V D+ L KP RD + V R+ Sbjct: 61 GIDVLREVKERQPSIPVVMITGYPNVETASDAVRLGAFDYLPKPVK-RDALLRVARM 116 >gi|296272231|ref|YP_003654862.1| putative PAS/PAC sensor protein [Arcobacter nitrofigilis DSM 7299] gi|296096406|gb|ADG92356.1| putative PAS/PAC sensor protein [Arcobacter nitrofigilis DSM 7299] Length = 455 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 IL EDDD MR L L +V +NG +K ++ + L+++DI MP+M GI Sbjct: 13 ILYVEDDDVMRTELASLLTNFFAQVFCASNGTEGLEKFKKNHKKIDLIISDINMPKMSGI 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ + + D D+ V+F T ++ DS K + KP +R L+ ++ Sbjct: 73 DMIKEIRKTDKDVGVIFSTAYSDKEFLIDSIKLKVVNYIVKPIDIRALLESISEF 127 >gi|238759013|ref|ZP_04620184.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC 35236] gi|238702824|gb|EEP95370.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC 35236] Length = 221 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 58/113 (51%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 +L ED ++ +L KAL AG+ V N+G +A ++ E ++L++ D+ +P ++G+EL Sbjct: 1 MLVEDHPELSHWLQKALTHAGFAVDVANDGVAADHLLQNENYALVVLDVALPRLNGLELL 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + L V+ +T VA L+KPF L +L + LL Sbjct: 61 ARLRKRGQTLPVLLLTARTEVADRVKGLNQGADDYLTKPFELDELEARIRALL 113 >gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 244 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD D+ L L YEVV C NG ++ + + L+ D+++P +DG+ Sbjct: 5 KRILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLMLPGVDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RRA + ++ I+ ++ L+KPF + +LV V LL Sbjct: 65 EICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALL 120 >gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 237 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L +L GY V ++G +A + + EP+ L+L D++MP +DG+ Sbjct: 8 RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLT 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + V+ +T AV L KPF L +L+ V LL Sbjct: 68 ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALL 122 >gi|330880795|gb|EGH14944.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 356 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV ++ E ++LTD+ MP M Sbjct: 1 MLNAVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAQLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +DD ++R ++ L ++G+ +G A K+ + L++ D++MP MDG E Sbjct: 5 KIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVMMPNMDGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R +L V+ +T +A L+KPF +L+ V LL Sbjct: 65 LCRHLRRYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALL 119 >gi|322421476|ref|YP_004200699.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] gi|320127863|gb|ADW15423.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] Length = 534 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Query: 26 GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR--ATELDPDLKVMFITGF 83 G+EVV+ +NG A +++ ++L D++MPEMDG E+ RR A E ++ V+ IT + Sbjct: 29 GFEVVTASNGLEALGEIQRGRVDIVLLDVMMPEMDGFEVCRRIKAEERYRNIPVVMITAY 88 Query: 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 AA +SKPF +++ + LL +K Sbjct: 89 AARENRIMGIEAGAEDFISKPFDSAEVLARIGMLLKVK 126 >gi|218258768|ref|ZP_03475054.1| hypothetical protein PRABACTJOHN_00710 [Parabacteroides johnsonii DSM 18315] gi|218225233|gb|EEC97883.1| hypothetical protein PRABACTJOHN_00710 [Parabacteroides johnsonii DSM 18315] Length = 1333 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++++ + L AL Y+V+ NG K EE L+++D++MP M G+E Sbjct: 1084 KVLIVEDNEELLQIL-NALFAPFYQVILARNGEEGLRKANEEKPDLVVSDVMMPLMSGME 1142 Query: 64 LARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + DL V+ +T +V N + +SKPFH + L+ N L+ Sbjct: 1143 MCMKIKN-NIDLCHIPVVLLTALDSVEYNIEGLQQGADDYISKPFHAKVLLMRCNNLI 1199 >gi|197116827|ref|YP_002137254.1| Cache/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086187|gb|ACH37458.1| sensor histidine kinase response regulator, Cache, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 955 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 ILL ED++ + K L + GY V + A A + + L+LTD+VMP M+G E Sbjct: 839 ILLVEDEEMLLWTTTKILEEMGYTVQQAESPAKAIEICENGKQIDLVLTDVVMPGMNGRE 898 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R PD+KV+F++G+ A + + +SKP + L ++ + L Sbjct: 899 MVDRIRSTRPDIKVLFMSGYTADIVAQRGIVEEGMFYISKPLDAQQLHEKIVQTL 953 >gi|77461061|ref|YP_350568.1| two-component response regulator PilR [Pseudomonas fluorescens Pf0-1] gi|77385064|gb|ABA76577.1| putative two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 448 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D+R L LG+ + S N A + E F L LTD+ +P+ G+ Sbjct: 7 QKILIVDDEPDIRELLEITLGRMKLDTFSARNLEEAQALLHRETFDLCLTDMRLPDGTGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 EL + + P L V IT + ++ ++ L+KP LR+LV R+ Sbjct: 67 ELVQHIQQRYPQLPVAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRM 124 >gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614] gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614] Length = 236 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ + AL G++V + + G+ A +E ++ DI++P+ DG+E Sbjct: 12 RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR DP + V+F+T AV ++KPF L +LV + L+ Sbjct: 72 VLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLM 126 >gi|330503882|ref|YP_004380751.1| response regulator receiver protein [Pseudomonas mendocina NK-01] gi|328918168|gb|AEB58999.1| response regulator receiver protein [Pseudomonas mendocina NK-01] Length = 394 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 48/78 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G++V+ NNG + ++E L++ D+ MP++DG+EL Sbjct: 8 LLIIDDDDVVRASLAAYLEDSGFKVLQANNGLQGLEVFQQEGPDLMICDLRMPQVDGLEL 67 Query: 65 ARRATELDPDLKVMFITG 82 RR L ++ V+ ++G Sbjct: 68 IRRINALGVEVPVIVVSG 85 >gi|320353192|ref|YP_004194531.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320121694|gb|ADW17240.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 584 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMD 60 + IL +D++D+ + L GY V+ + A Y EE LL+TD MP M Sbjct: 459 ETILFVDDEEDIVSMRTRMLSYLGYRVLPATSPEQALGYFTRGEERIDLLITDHTMPRMT 518 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++LA L PDL ++ +G++ ++ + L+KP +R L + LL Sbjct: 519 GLQLAAEINALYPDLPIILCSGYSEAVTLEEALEAGVRRFLAKPVDMRLLALAIRELL 576 >gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] Length = 238 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL EDDDD+ L L GY++V +G A ++ ++ + ++ D+++P +D Sbjct: 1 MAKTILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RR ++ L V+ I+ + L+KPF L +L+ V L Sbjct: 61 GLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118 >gi|188990490|ref|YP_001902500.1| two-component system response regulator [Xanthomonas campestris pv. campestris str. B100] gi|167732250|emb|CAP50442.1| two-component system response regulator [Xanthomonas campestris pv. campestris] Length = 464 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +G Sbjct: 4 TKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL P V IT F ++ L ++ +SKP + L V L + Sbjct: 64 IELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|17942992|pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM Thermotoga Maritima Length = 225 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI +P DG Sbjct: 2 NVRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ + E + V+ +T + V L KPF LR+L+ V L+ K Sbjct: 62 WEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRK 121 Query: 122 N 122 + Sbjct: 122 S 122 >gi|148265760|ref|YP_001232466.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399260|gb|ABQ27893.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 454 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 54/106 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GYEVV+ +G + E +L++TD+ MP + Sbjct: 1 MAAKILIIDDDTSLRRVLEYNLQEEGYEVVTAADGEAGLALFAECSPALVVTDLKMPGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G ++ E P V+ IT F A+ ++ ++KPF+ Sbjct: 61 GFQVLATIKERSPATLVIVITAFGAIDTAIEAMKLGAYDYITKPFN 106 >gi|312130834|ref|YP_003998174.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907380|gb|ADQ17821.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1291 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED+ ++R+ +IK + Y++ +G ++ +E L+++DI+MP+MDGI Sbjct: 1044 QILLLVEDNREIRQ-MIKEILSPYYQIREATDGMEGWNMAQEISPDLIISDIMMPQMDGI 1102 Query: 63 ELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + + DP + V+ +T A VA + ++KPF L+ + LL Sbjct: 1103 ELCGK-LKTDPKTSHIPVILLTARATVAYKQEGYETGADAYITKPFSPNLLLVRIKNLL 1160 >gi|254446581|ref|ZP_05060057.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198260889|gb|EDY85197.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 231 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LL EDD +R + + L K ++V +NG L+L D +P+ D Sbjct: 1 MKKNVLLVEDDPALRMVMREVL-KDEFDVDEADNGDDGIHMGTSPGHDLILLDYHLPKKD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA----KVLSKPFHLRDLVNEVNR 116 G+++ PD+ V+ +TG+ LNPDS A N K+ KPF+ R L+ EV R Sbjct: 60 GLQVIEAIKAAHPDVPVIVLTGY----LNPDSEAQFNRLGANKIFPKPFNYRALL-EVVR 114 Query: 117 LLTI 120 LT+ Sbjct: 115 SLTV 118 >gi|168702450|ref|ZP_02734727.1| hypothetical protein GobsU_23182 [Gemmata obscuriglobus UQM 2246] Length = 323 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL +D RR + L AG + ++ +G SA + + P SL+LTD+ MP+MDG+ Sbjct: 32 VLLVDDSSVQRRIVHSLLDAAGTWNIIQATDGLSALKMIEQAPPSLVLTDVYMPKMDGLV 91 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + + P + V+ +TG + D+ + + K + DL + R+LT Sbjct: 92 LVEQIRDRFPSVPVVLMTGHGSEQTAVDALKAGASDYIPKRAMVTDLGRILERVLT 147 >gi|220916290|ref|YP_002491594.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219954144|gb|ACL64528.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 481 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ ++RR L L GY V+ + + ++ EP L + DI +P MDG+ L Sbjct: 8 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLTL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 RA EL DL V+ I+G A + D+ SKP RD V L++++N Sbjct: 68 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVD-RDRV-----LVSVRN 119 >gi|160885441|ref|ZP_02066444.1| hypothetical protein BACOVA_03441 [Bacteroides ovatus ATCC 8483] gi|156109063|gb|EDO10808.1| hypothetical protein BACOVA_03441 [Bacteroides ovatus ATCC 8483] Length = 1321 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +I++ +DDD++ RFL L + Y+V C NG + ++ L+++D+VMPEMDG Sbjct: 1065 NYRIVIVDDDDEILRFLEAEL-SSQYKVYICRNGKEGLQTILKQQPDLIISDVVMPEMDG 1123 Query: 62 IELAR 66 I L + Sbjct: 1124 ISLLK 1128 >gi|94500423|ref|ZP_01306955.1| two-component response regulator NtrC [Oceanobacter sp. RED65] gi|94427458|gb|EAT12436.1| two-component response regulator NtrC [Oceanobacter sp. RED65] Length = 474 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+ + +DD +R L KAL + E S +G + + E +++D+ MP MDG+E Sbjct: 3 KVWIIDDDRSIRWVLEKALEQENIESHSFESGEKVLNALNRETPDAIVSDVRMPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ E+ PD+ V+ +T + + +S + L KPF + + V + R + Sbjct: 63 LLKQVHEIQPDIPVIIMTAHSDLDSAVNSYQQGAFEYLPKPFDVDEAVALIKRAI 117 >gi|86160629|ref|YP_467414.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85777140|gb|ABC83977.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 487 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 ++ L+ +DD +RR L ALG G+EV++ + + EE LL+TD+ MP MD Sbjct: 355 RRALVVDDDALLRRMLADALGGRGFEVLTAADATEGLRVLAEEVLALDLLVTDVRMPGMD 414 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNP 90 G EL RR + + DL ++ +TG L P Sbjct: 415 GAELVRRIRTVGGEADLAIVAVTGRLEEGLEP 446 >gi|87119489|ref|ZP_01075386.1| Helix-turn-helix, Fis-type protein [Marinomonas sp. MED121] gi|86164965|gb|EAQ66233.1| Helix-turn-helix, Fis-type protein [Marinomonas sp. MED121] Length = 448 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD ++ L L A Y V + A +RE+ F ++++D+ +P MDG L Sbjct: 6 LLIVEDDKELAEALEDTLMLANYHCVLAYSAEDAVLALREQAFDMVVSDVNLPGMDGYGL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E PDL +M +T F +A ++ L KPF +L+ + + Sbjct: 66 LSHVIEKYPDLPIMLMTAFGDIAHAVEAMREGAVDYLLKPFQADELLTTIAK 117 >gi|84501090|ref|ZP_00999325.1| nitrogen regulation protein NtrC [Oceanicola batsensis HTCC2597] gi|84391157|gb|EAQ03575.1| nitrogen regulation protein NtrC [Oceanicola batsensis HTCC2597] Length = 456 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTARALEV 120 >gi|296103876|ref|YP_003614022.1| two-component system, OmpR family, response regulator TctD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058335|gb|ADF63073.1| two-component system, OmpR family, response regulator TctD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 224 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V ++G +A ++ E +++ + DI MP DG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQEGFAVDCVSDGRAADHLLQGENYAVAILDIGMPGFDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + L V+F+T + VA L KPF L +L + LL Sbjct: 62 VVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALL 116 >gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] Length = 222 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R + L +GY V+S NG A V + L++TDI MPEMDG EL Sbjct: 5 LLVVDDDLGTRLSISDYLEMSGYFVISATNGQEALQLVEKHQPHLIVTDIAMPEMDGFEL 64 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R P + V+F+T + L KPF L +L Sbjct: 65 VKRVRS-QPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEEL 112 >gi|283836743|ref|ZP_06356484.1| transcriptional regulatory protein ZraR [Citrobacter youngae ATCC 29220] gi|291067296|gb|EFE05405.1| transcriptional regulatory protein ZraR [Citrobacter youngae ATCC 29220] Length = 441 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 45/82 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GYEV +G +A ++V E F L+L D+ M EMDGI Sbjct: 8 ILVVDDDISHCTILQALLRGWGYEVALAYSGRAALEQVHERVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + V+ +T F++V Sbjct: 68 LKEIKALNPAIPVLIMTAFSSV 89 >gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342] gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342] Length = 946 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ V+ N+G A + + ++ ++L+D+ MP MDG L Sbjct: 825 ILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVLSKQHIDIVLSDVNMPNMDGYRL 884 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 885 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 927 >gi|196232791|ref|ZP_03131642.1| response regulator receiver sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196223251|gb|EDY17770.1| response regulator receiver sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 593 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEM 59 Q +L+ +D+ +R+ L + GY V+ +G A E S+ + TD++MP + Sbjct: 455 GQLVLIVDDEVAVRKTTEIMLAQHGYRTVTAADGVEALAIYAERGGSIDAVFTDVMMPLV 514 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 DG+ L+R +++P+++++ TG A + + A K ++VL KPF Sbjct: 515 DGVALSRALRKMNPEVRIIAATGAAEESRKQELKALKVSRVLGKPF 560 >gi|170749452|ref|YP_001755712.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655974|gb|ACB25029.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 814 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 5/103 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 +L+ ED+ ++ RF + L G+ V +N +A ++ + PF + +D+VMP M G+ Sbjct: 684 VLVVEDNLEVGRFCTQLLEDLGHATVWAHNAEAALAEMEKVPFRFDAVFSDVVMPGMGGV 743 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ELARR P L V+ TG++ D++ +++ KP+ Sbjct: 744 ELARRLRADHPALPVILTTGYSDALARDDAHG---FELVRKPY 783 >gi|153807242|ref|ZP_01959910.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185] gi|149130362|gb|EDM21572.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185] Length = 1318 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++ +++ L + + Y+V + ++G A + +++E S++L+D+VMP M G E Sbjct: 1051 KMLIVEDNESIKQML-AGIFETFYQVSTASDGEEALEMIQKEMPSIILSDVVMPRMSGTE 1109 Query: 64 LARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1110 LCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1166 >gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 215 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD R + L +GY V+S NG A + V + L++TDI MPEMD Sbjct: 1 MPLTILVVDDDFGTRLSISDYLEISGYTVISAENGQEALELVDKHKPHLIVTDITMPEMD 60 Query: 61 GIELARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G +L +R A L P V+F+T A+ L KPF L +L Sbjct: 61 GYDLVKRIRSRPAFRLLP---VIFLTAHTAIQSRIRGYQLGCDNYLPKPFELDEL 112 >gi|75908368|ref|YP_322664.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702093|gb|ABA21769.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 407 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 12/128 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N +L+ +D + L L +AG+ V NG SA KV+E +L+L D++MP MD Sbjct: 5 INNSVLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMD 64 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G E R +A D+ V+F+T AL+ N K ++ ++KP +++ Sbjct: 65 GFETCRHLKANPKTKDIPVIFMT-----ALSDTVNKVKGLQIGAVDYITKPIEYEEVLAR 119 Query: 114 VNRLLTIK 121 +N L ++ Sbjct: 120 INVHLELR 127 >gi|283851563|ref|ZP_06368843.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573097|gb|EFC21077.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 535 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ RR ++ L G+ V + +G K+R+ PF L+L D+ MP+MDG+E Sbjct: 396 ILLAEDEPINRRVAVELLLLRGHTVETAQSGGEVLAKLRQAPFDLVLMDVRMPDMDGMEA 455 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 R R E D + + A AL D A L+KP L L + R+ Sbjct: 456 VRAIRRGEAGADTAGIPVVALTAYALKNDRERFLAAGMDDYLAKPLDLDGLDRILERI 513 >gi|262403335|ref|ZP_06079895.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio sp. RC586] gi|262350834|gb|EEY99967.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio sp. RC586] Length = 450 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVEMFADGRSALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + P V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|150007294|ref|YP_001302037.1| two-component system response regulator RteB [Parabacteroides distasonis ATCC 8503] gi|149935718|gb|ABR42415.1| rteB, two-component system response regulator [Parabacteroides distasonis ATCC 8503] Length = 439 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 63/117 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+ V S ++ + A K+ EE F L+++D+ +P+ DGI+L Sbjct: 4 ILIVEDDITFSLMLTTWLGKKGFVVRSSSSVSDAKRKLGEEAFDLVISDLRLPDSDGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P L ++ +T +A + + A ++KP + +L+ ++ L+ ++ Sbjct: 64 LKWLKSTHPSLPLIMMTSYAEIQTAVQAMKLGAADYIAKPLNPDELLGKIKELVRVE 120 >gi|158523275|ref|YP_001531145.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512101|gb|ABW69068.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1106 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59 + +L+ ED+ + + K L GY V+ + +A V P LL+TD+VMP M Sbjct: 986 GETVLVVEDEAAVLKLTQKTLTGLGYTVLKALSPQAALKLVDSHSNPIDLLITDVVMPGM 1045 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G L+ + P L+V+F++G+ A + + + KPF+ DL +V L Sbjct: 1046 NGRALSEKLKARYPTLRVLFMSGYTANVIAHRGILDEGVHFIQKPFNRVDLARKVREAL 1104 >gi|153003497|ref|YP_001377822.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152027070|gb|ABS24838.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 121 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 13/124 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D D +RR L A+ + G+ VS ++ A RE+P L L D MP MDG Sbjct: 3 RVLIVDDTDIVRRALELAVRRMGHAAVSTSDAVEALALAREQPPDLALVDFRMPGMDGAA 62 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNA------PKNAKVLSKPFHLRDLVNEVN 115 L A R + + K++F++ A PD A + A + KPFHL DLV V Sbjct: 63 LFHALRESLGERCPKILFVS-----ATPPDEVAREVERIGRPAGYVKKPFHLDDLVKMVG 117 Query: 116 RLLT 119 L Sbjct: 118 EALA 121 >gi|94969921|ref|YP_591969.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94551971|gb|ABF41895.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 159 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ +D+ + + + L + ++ C NG +A + + +++D++MP+++G+ Sbjct: 45 QRVLVVDDERLVADTVCEILKRFHFDATPCYNGEAAIEAASQACPDFVVSDVMMPKLNGV 104 Query: 63 ELARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E A R EL P +V+ +G AA A L + ++L+KP H +LV + Sbjct: 105 ETALRIQELCPRTRVLLFSGNAATADLLKRARAEGHDFELLAKPIHPEELVRRLQ 159 >gi|148256094|ref|YP_001240679.1| putative response regulator in two-component regulatory system (CheY-like protein) [Bradyrhizobium sp. BTAi1] gi|146408267|gb|ABQ36773.1| putative response regulator in two-component regulatory system (CheY-like protein) [Bradyrhizobium sp. BTAi1] Length = 121 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED++ + L GY+ ++G A D VR L+L DI +P++ Sbjct: 1 MGKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSSGVEALDIVRRTRPDLILMDIQLPQVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ R + DPDL+ + + A A+ D + LSKP + + V R Sbjct: 61 GLEVTRWIKD-DPDLRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRF 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|330996468|ref|ZP_08320350.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573024|gb|EGG54643.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1328 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+D +R F+ + L + V + +NG A D +R+E L+++D++MPEM+G EL Sbjct: 1056 ILIVEDEDSIRNFMKERLSPL-FIVETASNGKDALDTIRKEHIDLVISDVMMPEMNGYEL 1114 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 T + D+ + I A N + K KV + KPF L ++ LL Sbjct: 1115 ---CTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLL 1170 >gi|327441042|dbj|BAK17407.1| FOG: CheY-like receiver [Solibacillus silvestris StLB046] Length = 120 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++IL+ +D MR + L K GYEVV +G A +K E L+ DI MPEM Sbjct: 1 MSKRILIVDDAAFMRMMIKDILTKNGYEVVGEAADGIQAVEKYNELRPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + DP V+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGIAALKEIKGTDPSAVVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIQKAL 119 >gi|308273226|emb|CBX29829.1| hypothetical protein N47_F15240 [uncultured Desulfobacterium sp.] Length = 197 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 39/58 (67%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 V C +GA A ++ E F L++TD++MP + G+++ + A + DPD V+ +TG+A++ Sbjct: 11 VSVCYDGAEAISMIKNESFDLIITDLIMPNIGGLDVLKHAKKKDPDTLVIIVTGYASL 68 >gi|300867480|ref|ZP_07112131.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300334474|emb|CBN57299.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 378 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+ +D D R L L + GY+V NG A ++E P +L+L D++MP+M+ Sbjct: 9 IQASILVVDDTPDNVRLLSTILTEEGYQVRKALNGQRALTTIQEFPPALILLDVMMPDMN 68 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ ++ + + V+F++ V + ++KPF R+++ V L Sbjct: 69 GYEVCKKLKDSPQTSSIPVIFLSALDHVLDKVKAFEVGGVDYITKPFQEREVLVRVANQL 128 Query: 119 TIKN 122 I+N Sbjct: 129 MIQN 132 >gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 245 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV + NGA A RE +L DI++P+MDG+ Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPDMDGLT 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R P++ V+F+T AV ++KPF L ++V + LL Sbjct: 81 LLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLL 135 >gi|291518411|emb|CBK73632.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 161 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 5/84 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ ED+ +R+ + + ++G EV+ C+NG A D ++ ++LTDI MP+M+ Sbjct: 3 KILVVEDEKLIRQGISAMIKRSGVPYEEVIECSNGLQALDILKTTRIDVMLTDIRMPKMN 62 Query: 61 GIELARRATELD-PDLKVMFITGF 83 GIEL + ELD P L V ++G+ Sbjct: 63 GIELVQAVQELDNPPLSVA-VSGY 85 >gi|209528133|ref|ZP_03276607.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491421|gb|EDZ91802.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 665 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 Q IL+ +D++ +R +L Y+V+ +NG A R+ E ++ DI+MP M Sbjct: 541 QLILVVDDEEPIREITKASLESFQYQVLVASNGVEAIKIYRQYLEQIDCVVIDIMMPVMA 600 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G R L+P +K++ I+G+ +V + D LSKPF ++L+ + + L Sbjct: 601 GKTTIRELKSLNPQIKIVGISGYFSVDIAKDIAELGVDIFLSKPFTTQELLEVLQKCL 658 >gi|218779539|ref|YP_002430857.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760923|gb|ACL03389.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 743 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMDGI 62 ILL +D+ D+ + + L GY+ +S G A E L++ DIVMP+M+G Sbjct: 624 ILLVDDERDLLQTGTEILENLGYKALSAGGGKEAVKMFGANREAIDLVVLDIVMPDMNGG 683 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + EL+P++KV+ +G+A+ + + + KPF +L ++ +L N Sbjct: 684 AVFDKMKELNPNVKVLISSGYASDGKSSEIMKKGANGFIQKPFTAEELSQKIAEILQKAN 743 >gi|148975874|ref|ZP_01812663.1| sensor histidine kinase/response regulator LuxN [Vibrionales bacterium SWAT-3] gi|145964619|gb|EDK29872.1| sensor histidine kinase/response regulator LuxN [Vibrionales bacterium SWAT-3] Length = 682 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +RRF L K G++VV +G A D + E L+L DI MP MDG+ Sbjct: 564 RTIMVVDDNESLRRFTAMLLEKQGFDVVQKEDGQQALDALDSEAIDLVLMDIEMPIMDGV 623 Query: 63 ELAR 66 E +R Sbjct: 624 EASR 627 >gi|126736535|ref|ZP_01752276.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Roseobacter sp. CCS2] gi|126714073|gb|EBA10943.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Roseobacter sp. CCS2] Length = 445 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 5/127 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q +L +D++++R + L A + A ++ +L+TDI MP D Sbjct: 1 MKQTVLFVDDEEELRHATRQTLMLADIPATILDKAELALAQISRGFPGVLVTDIRMPGND 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117 G+ L R+A E+DP+ V+ +TG V L S + KPF LV+ + R Sbjct: 61 GLWLMRKALEVDPEFPVILVTGHGDVNLAVSSMREGAYDFVEKPFAPSRLVSTIQRALDK 120 Query: 118 --LTIKN 122 LTI+N Sbjct: 121 RRLTIEN 127 >gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 1407 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 38/63 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED ++ +I LGK GY + NGA A + P+ L++ D+ MPEMDG+E Sbjct: 1288 RLLLAEDTSINQKVVIGILGKLGYHIDVVVNGAEAVRALETTPYDLVIMDLQMPEMDGLE 1347 Query: 64 LAR 66 R Sbjct: 1348 ATR 1350 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 +IL+ +D+ R L + G V + GA +++ EP+ L L D+ MP+ Sbjct: 1134 RILIVDDNATNRTVLRRQFLSWGAVVTELSGGAQVVAELKRAHESGEPYRLALIDMQMPD 1193 Query: 59 MDGIELARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 MDG L R + L P + VM ++ + D + LSKP DL + Sbjct: 1194 MDGATLCRSIKDDEKLAPTVLVM-MSSLGSKCSEEDLKRMGCSACLSKPILQSDLFD 1249 >gi|78776836|ref|YP_393151.1| response regulator receiver domain-containing protein [Sulfurimonas denitrificans DSM 1251] gi|78497376|gb|ABB43916.1| response regulator receiver domain protein (CheY-like) [Sulfurimonas denitrificans DSM 1251] Length = 384 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI + EDD +MR+ L A+ +E+++ N A + E F L++TDI MP MDGI Sbjct: 2 KIAIVEDDINMRKSLEIAMSDYKEFEIITFKNAKDALKGINE-SFHLVITDINMPGMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E + ELD +V+ +TG A + +S L KPF + L+ + R Sbjct: 61 EFVK---ELDGKFEVIIMTGNATLQRAIESIHLGVKDFLLKPFDVDTLIAAIKR 111 >gi|326794390|ref|YP_004312210.1| response regulator receiver protein [Marinomonas mediterranea MMB-1] gi|326545154|gb|ADZ90374.1| response regulator receiver protein [Marinomonas mediterranea MMB-1] Length = 121 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ +L+ +D +R+ + L GY+V + +G A D R F +LTD MP MD Sbjct: 1 MNKNLLVVDDSPSVRQMVEATLKGGGYQVKTAKDGREALDICRTTKFDFVLTDQNMPNMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + RA + ++ +T A+ A+ A + KPF + L+ V +++ Sbjct: 61 GLTLIKSLRAMSAYARVPLIVLTTEASDAMKAKGKAAGATGWMVKPFDPKKLLEVVAKVV 120 >gi|317489141|ref|ZP_07947665.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325833786|ref|ZP_08166162.1| response regulator MprA [Eggerthella sp. HGA1] gi|316911761|gb|EFV33346.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485228|gb|EGC87699.1| response regulator MprA [Eggerthella sp. HGA1] Length = 228 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + + L + +EV+S +G A D + E L+++D++MP +DG+E Sbjct: 3 RILVAEDDASANKLISAVLRRDNHEVLSAVDGQDALDVLDHEHVDLIVSDVMMPRVDGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ E D ++ +T L+KP +++LV V LL Sbjct: 63 LVRQLREAGWDTPILMLTARQDAETLHGGFIAGVDDYLTKPADMKELVLRVRALL 117 >gi|312128037|ref|YP_003992911.1| two component transcriptional regulator, arac family [Caldicellulosiruptor hydrothermalis 108] gi|311778056|gb|ADQ07542.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor hydrothermalis 108] Length = 509 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 14/125 (11%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL ED+ MR+ +IK + + G+E+ NG A D ++ E +++TDI MP MD Sbjct: 3 KILLVEDEIFMRKGIIKLIDWERLGFEIAYEAGNGQEALDILKSEKVDVIITDIKMPVMD 62 Query: 61 GIELARRAT-ELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIEL +R + E + ++ I+G FA A+ N L KP +L+ + Sbjct: 63 GIELIKRVSEEFENKPAIIIISGYNEFEFAKAAIKYGVN-----DYLLKPIDENELMQTL 117 Query: 115 NRLLT 119 R+ T Sbjct: 118 ERIKT 122 >gi|301058104|ref|ZP_07199156.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] gi|300447736|gb|EFK11449.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] Length = 454 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 52/103 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ + L L GYE+++ + A +RE L++TD+ MP M G+ Sbjct: 2 ETILIVDDEKNYLVVLEALLSAEGYEIITARDAKMAVSILREADVDLVITDMKMPGMSGM 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 EL ++D ++ V+ +T F + + ++ + KPF Sbjct: 62 ELLEECMKIDSEIPVIMMTAFGTIEMAVEAMKKHAYDYIQKPF 104 >gi|301064677|ref|ZP_07205066.1| diguanylate cyclase (GGDEF) domain protein [delta proteobacterium NaphS2] gi|300441219|gb|EFK05595.1| diguanylate cyclase (GGDEF) domain protein [delta proteobacterium NaphS2] Length = 310 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +L+ +D+ +R + L G+ V + +G A K+ ++ LLTDI MP +DG Sbjct: 12 DEHVLVVDDEKIVREPISAMLRHLGFRVDTAESGNEALLKLESSSYTFLLTDIRMPGIDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +EL RR + PD+ + +TG++ ++ ++KPF + ++ + R + + Sbjct: 72 LELIRRVKKERPDICAIAMTGYSEEYKYVETVNAGATDFVNKPFGIEEIEAKFKRGIIER 131 Query: 122 N 122 N Sbjct: 132 N 132 >gi|293604465|ref|ZP_06686870.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Achromobacter piechaudii ATCC 43553] gi|292817046|gb|EFF76122.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Achromobacter piechaudii ATCC 43553] Length = 468 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 54/102 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++ +DD+++RR ++ L G V + + SA + +++TDI MP++DG++ Sbjct: 24 HVVFIDDDEELRRANVQTLKLHGMTVDAYGSARSALPALHRGFEGVVVTDIRMPDIDGVQ 83 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L R +LDP+L V+ ITG +A L+KP+ Sbjct: 84 LFHRLRDLDPELPVILITGHGDIATAVQCMRDGAYDFLAKPY 125 >gi|254881295|ref|ZP_05254005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254834088|gb|EET14397.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1406 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR ++ L K Y++ NGA A ++ E L+++D++MP MDG Sbjct: 1156 ETILIVEDNADMRTYICSIL-KNNYQLKEAQNGAEALYLIQRETIDLIVSDLMMPVMDGN 1214 Query: 63 ELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL+RR A + + +T + A S + L KPF +EV L I Sbjct: 1215 ELSRRVKANLATSHIPFLMLTALRSEAQERISYEIGVDEYLCKPF------DEVILRLRI 1268 Query: 121 KN 122 +N Sbjct: 1269 RN 1270 >gi|288574315|ref|ZP_06392672.1| response regulator receiver modulated CheW protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570056|gb|EFC91613.1| response regulator receiver modulated CheW protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 309 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREE---PFSLLLTDIVMPEM 59 +IL+AED +RR +I L G+ V S +G +A+D++ EE F LL++DI MP+M Sbjct: 180 RILVAEDSPLIRRQVIDVLADGGFHNVESVGHGKAAWDRISEEDPGHFDLLISDIEMPKM 239 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG L R + E DL V+ + A + + + ++KP + LV +V L Sbjct: 240 DGFALTRLVKQDEERRDLPVVIFSSIMADDIRRKAASIGAEAQITKP-EIGGLVEKVCEL 298 Query: 118 L 118 L Sbjct: 299 L 299 >gi|254412177|ref|ZP_05025952.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181143|gb|EDX76132.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1263 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ L+ DD+ + R L++A+ K G+E++ +G KV E L+L D+VMPEMD Sbjct: 1050 DKRKLMIVDDNRVNRTLLRAMLKPLGFEIIEAVDGLDCLQKVVESYPDLILIDLVMPEMD 1109 Query: 61 GIELARRATEL----DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E RR L D D+ + ++ + +S A L+KP + L++ + Sbjct: 1110 GLETTRRMLALPQLQDKDIVAIALSASVYPQIQQESLAAGCRGFLAKPVESQQLLDAI 1167 >gi|193215712|ref|YP_001996911.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089189|gb|ACF14464.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 798 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ +LL ED+ + L GY ++ + A + R +LLTD+VMPEM Sbjct: 679 NETVLLVEDELAILNVTKMMLESLGYHALTATSPQQAINLARTHAGQIDILLTDVVMPEM 738 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G EL R + P+LK ++++G+ A + + + KPF +L ++ L Sbjct: 739 NGRELLRTLLSIYPNLKHLYMSGYTANVIAHHGVLEEGVNFIQKPFSKEELSVKIREAL 797 >gi|241206253|ref|YP_002977349.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860143|gb|ACS57810.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 122 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL +D +R L AGY V NGA + F L++TD+ MP MD Sbjct: 1 MSAKILTVDDSASIRLTTKVTLTNAGYSVTEAVNGAEGLATAKGSSFDLIVTDLNMPVMD 60 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + +L + ++F+T + L + A L+KPF LV V ++L Sbjct: 61 GLTMIEELRKLPAQAGVPIIFLTTESDADLKARAKAAGATGWLTKPFDPESLVKIVKKVL 120 >gi|146283051|ref|YP_001173204.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] gi|145571256|gb|ABP80362.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] Length = 243 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 57/122 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + K+L+AED+ +L + L +AG+ V +G A V P+ LL+ D++MP +D Sbjct: 15 IRMKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLD 74 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ R ++ V+F+T V L KPF +L+ V LL Sbjct: 75 GWEVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 134 Query: 121 KN 122 N Sbjct: 135 GN 136 >gi|148654514|ref|YP_001274719.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148566624|gb|ABQ88769.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 139 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 52/111 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD RR L GY V+ +G +A + ++ L++TD+ MP MDG++L Sbjct: 17 VLIVEDDAATRRLYKFLLSNGGYVVLEAEDGVAAVEVLQRHRCDLVITDMNMPRMDGLDL 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R D+ V+ IT F + L+KPF +L V+ Sbjct: 77 IRTIRRDFGDIYVILITAFGTPDTQKQAMRLGANDYLAKPFDFEELERRVH 127 >gi|77459305|ref|YP_348812.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77383308|gb|ABA74821.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 845 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + +++ EDD +R ++ L + GY + A + + LL+TD+ +P M+G Sbjct: 725 ETVVVVEDDPAVRMLVMDLLKELGYRAHEAEDAKGALPLLESDLRVDLLVTDVGLPGMNG 784 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A A + P LKV+F+TG+A A +++KPF + L ++ +++ Sbjct: 785 RQMAEIARQHRPGLKVLFMTGYAQKAAERQGFLEDGMDMVAKPFSIEQLAGKIRTMIS 842 >gi|39997601|ref|NP_953552.1| sensory box protein/sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39984493|gb|AAR35879.1| sensory box protein/sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 564 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L+ ED+D +R L GY V + + A A KV + L+ TDI++ + Sbjct: 1 MARRVLIVEDEDTLRFTFEHFLAAEGYAVDTAADFAEAIGKVESADYDLVFTDIILGNDN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI++ R E P + V+ ITG+ V D+ L KP RD + V R+ Sbjct: 61 GIDVLREVKERQPSIPVVMITGYPNVETASDAVRLGAFDYLPKPVK-RDALLRVARM 116 >gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125] gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125] Length = 231 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ ++R + L K GY V+ ++G A D + + LL+ DI+MP +DG E+ Sbjct: 6 ILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQVIDLLILDIMMPNIDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 AR+ E ++ ++F++ A D + + + ++KPF +LV VN L Sbjct: 66 ARQIRE-QHNMPIIFLS-----AKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQL 118 >gi|163846536|ref|YP_001634580.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524323|ref|YP_002568794.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667825|gb|ABY34191.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448202|gb|ACM52468.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 274 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 45/83 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L L +AGY V + G A EPF L+L D+ MP M G+E Sbjct: 6 RVLVVDDEQNIRLTLNALLSRAGYAVTTAATGEEAVALFEREPFDLMLVDLQMPGMKGME 65 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + + E D ++ +TG ++ Sbjct: 66 VVAKVREAGHDAIIIVLTGHGSL 88 >gi|94312612|ref|YP_585821.1| response regulator receiver domain-containing protein [Cupriavidus metallidurans CH34] gi|93356464|gb|ABF10552.1| response regulator receiver domain protein (CheY-like) [Cupriavidus metallidurans CH34] Length = 127 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D +RR L GY V ++G AY+ RE F +L+TD VMP MDG+ Sbjct: 5 SILVVDDSPSLRRMTSACLRAGGYGVTEASDGKEAYEVAREGNFDMLVTDQVMPVMDGLS 64 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L R RA + ++ ++ A+ + + L+KPF +L+ V+ LL Sbjct: 65 LIRALRAMPDYATVPMLMLSTEHDDAILERAREAGASGFLAKPFDPDELMASVDALLGPP 124 Query: 122 N 122 N Sbjct: 125 N 125 >gi|332885754|gb|EGK06000.1| hypothetical protein HMPREF9456_02264 [Dysgonomonas mossii DSM 22836] Length = 1322 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +DD+ ++ ++ + L A Y+VV+ NNG A + +E L+++D+ MPEMDG Sbjct: 1070 QRILVVDDDEGLQEYIQREL-SASYKVVTANNGNEALQILLQERIDLVISDVAMPEMDGF 1128 Query: 63 ELARR 67 L ++ Sbjct: 1129 TLLKK 1133 >gi|317503269|ref|ZP_07961324.1| DNA-binding response regulator [Prevotella salivae DSM 15606] gi|315665626|gb|EFV05238.1| DNA-binding response regulator [Prevotella salivae DSM 15606] Length = 232 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GY C +G Y + + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYAATLCPDGEVGYREFLKTKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV + +L Sbjct: 66 LAQEIRQANTEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|303246501|ref|ZP_07332780.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio fructosovorans JJ] gi|302492211|gb|EFL52086.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio fructosovorans JJ] Length = 478 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+EV + ++G + VREE +++ D+ MP + G+E Sbjct: 3 QILIVDDDHQLRMSFERLLAAEGFEVRTASSGEAGIAAVREEAPDVVIMDVRMPGISGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E++P L V+ +T + + ++ + KPF + D++ +++ + Sbjct: 63 AYAAMREIEPRLPVIIMTAYGTTDIAIEATKMGAFDYILKPFDIPDILKLIDKAI 117 >gi|294675361|ref|YP_003575977.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294472978|gb|ADE82367.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 1334 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 21/131 (16%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++AEDD+++R +L L K Y++ +C NG A +V L+L+DI+MPEMDG L Sbjct: 1083 LVIAEDDEEIRNYLESELSK-DYDIHACTNGREALGEVIRTKPDLVLSDIMMPEMDGNTL 1141 Query: 65 ARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHL----RDLVN 112 R + +P+ + V+ +T A N D + ++ + + KPF++ R ++N Sbjct: 1142 CTR-IKTNPNTNSIPVVLLT-----AKNRDEDKLESLETGADAYIVKPFNMEILRRTIMN 1195 Query: 113 EVN--RLLTIK 121 +N RLL +K Sbjct: 1196 LINKHRLLRLK 1206 >gi|224584566|ref|YP_002638364.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469093|gb|ACN46923.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 224 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 57/107 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E + L + DI MP MDG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYVLAVLDINMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF L +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEEL 108 >gi|254168679|ref|ZP_04875521.1| hypothetical protein ABOONEI_1144 [Aciduliprofundum boonei T469] gi|289596868|ref|YP_003483564.1| response regulator receiver protein [Aciduliprofundum boonei T469] gi|197622305|gb|EDY34878.1| hypothetical protein ABOONEI_1144 [Aciduliprofundum boonei T469] gi|289534655|gb|ADD09002.1| response regulator receiver protein [Aciduliprofundum boonei T469] Length = 119 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 46/80 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLA+D + +FL L K G E++ N A +K +EE ++L DI++ + +GI+ Sbjct: 3 KLLLADDSELFYKFLRDVLKKEGIEIIWAKNKKEAIEKFKEEKPDIVLVDIILSDSNGID 62 Query: 64 LARRATELDPDLKVMFITGF 83 + + LD D +M I+G Sbjct: 63 VIKEIKALDKDANIMVISGL 82 >gi|170737061|ref|YP_001778321.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169819249|gb|ACA93831.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1237 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD + R +I+A L + GY ++ +NG A + + +L+L+D MP+MDG +L Sbjct: 999 ILVVDDHPINRLVIEAQLARLGYTAIAVSNGTDALHALDDSDIALVLSDCAMPDMDGYDL 1058 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD 91 ARR +P + + I A AL PD Sbjct: 1059 ARRIRSREPRSRHIPILALTANAL-PD 1084 >gi|23099024|ref|NP_692490.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777252|dbj|BAC13525.1| two-component response regulator involved in modulation of flagellar [Oceanobacillus iheyensis HTE831] Length = 120 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q+IL+ +D MR + L K +EVV +G A +K +E L+ DI MPE Sbjct: 1 MGQRILIVDDAAFMRMMIKDILTKNDFEVVDEAQDGNEAIEKFKEHKPDLVTMDITMPEK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + + D + K++ + A+ D+ + KPF ++ + + L+ Sbjct: 61 DGISALKEIKQFDSEAKIIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIQKALS 120 >gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e] gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL R2-561] gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e] Length = 225 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|325916240|ref|ZP_08178521.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas vesicatoria ATCC 35937] gi|325537534|gb|EGD09249.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas vesicatoria ATCC 35937] Length = 464 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNN 124 >gi|294777714|ref|ZP_06743165.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448782|gb|EFG17331.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1406 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR ++ L K Y++ NGA A ++ E L+++D++MP MDG Sbjct: 1156 ETILIVEDNADMRTYICSIL-KNNYQLKEAQNGAEALYLIQRETIDLIVSDLMMPVMDGN 1214 Query: 63 ELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL+RR A + + +T + A S + L KPF +EV L I Sbjct: 1215 ELSRRVKANLATSHIPFLMLTALRSEAQERISYEIGVDEYLCKPF------DEVILRLRI 1268 Query: 121 KN 122 +N Sbjct: 1269 RN 1270 >gi|289648218|ref|ZP_06479561.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 444 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV ++ E ++LTD+ MP M Sbjct: 1 MLNSVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAQLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|317052602|ref|YP_004113718.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] gi|316947686|gb|ADU67162.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] Length = 445 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +D+ R+ L L K G+EV++ N A A + + P L+L D MP+M+ Sbjct: 1 MSIKILIVDDEAMQRQMLEGFLLKQGFEVLTAANAAQALEIFQRLPVHLVLLDHRMPDMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G +L ++P ++ + +T + AV + L KP L L+ ++ L Sbjct: 61 GDQLLAELKAINPLVRAIMVTAYGAVDMAVQVMKLGAVDFLEKPVDLTQLLGKLQEL 117 >gi|238025637|ref|YP_002909869.1| ATP-binding region, ATPase-like protein [Burkholderia glumae BGR1] gi|237880302|gb|ACR32633.1| ATP-binding region, ATPase-like protein [Burkholderia glumae BGR1] Length = 895 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV----REEPFSLLLTDIVMPEMD 60 +LLAED ++R L L G+EV + +NGASA ++ R P +L+LTD MPE Sbjct: 700 VLLAEDTAEIRELLRGDLLSLGFEVEAYDNGASAIRRLIAEDRPAP-ALVLTDQFMPEAS 758 Query: 61 GIELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++ A P + V+ ++ + PD+ +A++L KP L DL N + LL Sbjct: 759 GHDVLAVARSYRPHVPVVLVSAVPFSQTTQPDATEYFDAQLL-KPISLADLRNTIAMLLD 817 Query: 120 IK 121 ++ Sbjct: 818 MQ 819 >gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134] gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134] Length = 232 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ D+ L L KAGYEV + NNG A + L+L DI+MP+MDG+E Sbjct: 8 KVLVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAIKVAKTFLPQLILMDIMMPKMDGVE 67 Query: 64 LARRATELD--PDLKVMFITG 82 R+ E+ D ++++T Sbjct: 68 AGRQLREMTEIADTYIIYLTA 88 >gi|146301601|ref|YP_001196192.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146156019|gb|ABQ06873.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 1384 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 9/120 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ ++R +L + L K+ Y+V++ NG Y+ ++ L++TD++MP MDG++L Sbjct: 1138 VLIVEDNPELRNYLKQELSKS-YKVITAENGKKGYELAVQKLPDLIITDVIMPVMDGLQL 1196 Query: 65 ARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + DLK ++ ++ A V + LSKPF L L + + +L+T Sbjct: 1197 CK---NIKGDLKTSHIPLLMLSAKAMVKDRLEGIDSGADMYLSKPFELDILKSSLAQLIT 1253 >gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 841 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 2/105 (1%) Query: 19 IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP--DLK 76 + L GY +S NG A E SL+L D++MPEM+G E R+ +L D+ Sbjct: 38 VACLESRGYRTLSAENGVQALQIAMEHQPSLILLDVMMPEMNGFETCRKLKKLSGCDDIP 97 Query: 77 VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 V+F+T + V ++KPF + +L V+ + +K Sbjct: 98 VIFMTALSDVKSKKAGFDAGGVDYVTKPFQVEELAARVHTHIALK 142 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD ++ R + + L YEV+ +N AY+ + +++++D+ MP G++ Sbjct: 720 VLVVDDDVNILRSIKRILRDEAYEVLVASNTEDAYEVLARREVAVIVSDLQMPGESGVQF 779 Query: 65 ARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + + P L+++ ++ +L N + + +SKP+ Sbjct: 780 FSKIKTMHPRSLRILLTGHGSSESLEGAINQGEIYRYISKPW 821 >gi|327478967|gb|AEA82277.1| histidine kinase-response regulator hybrid protein [Pseudomonas stutzeri DSM 4166] Length = 649 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++ +L+ ED +R + + L +AGY + +A + +P LLLTD+ +P + Sbjct: 529 HEHVLVVEDMPSVRMLIAETLIEAGYRCSQAGDVETAQALLEADPSIDLLLTDVGLPRLS 588 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A P L V+ +TG+A A + + + +++ KPF DL+ ++ LL Sbjct: 589 GRQLAEWARRSRPALPVVLMTGYAEKASSREGFVDERMELVLKPFEGADLLGKIRALL 646 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ R + + L + GY+V+ G+ V L+ D+ +P+M G + Sbjct: 6 RLLIVDDNATTRYAMRRVLERHGYQVLEAGTGSDGLALVAGAMPDALILDVNLPDMSGFD 65 Query: 64 LARRATELDPDLKVMFITGFAAVAL 88 +AR+ DP+ ++ + +A ++ Sbjct: 66 IARQ-LRTDPNTALLPLIHVSAASI 89 >gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 241 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++++R+ L +L GYEV + +G +A D+ R L+ D++MP MDG Sbjct: 15 KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR + +F++ +V + ++KPF L ++V + LL Sbjct: 75 LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLL 129 >gi|297568325|ref|YP_003689669.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924240|gb|ADH85050.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 464 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 56/119 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +R + L G+ ++ NG + + EP L+L DI MP +DG Sbjct: 6 QRRILVVDDEAGIRESMAGILADEGFVALTAENGEQGLELLENEPVDLVLLDIWMPGVDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ R +L P L V+ I+G + + + KP ++ +N L + Sbjct: 66 MEILGRLRDLYPHLPVIMISGHGTIETAVQATRMGAYDFIEKPLSYDKVILAINNALRL 124 >gi|218438930|ref|YP_002377259.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171658|gb|ACK70391.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1057 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60 +Q IL+ +D MRR + +L G+ V +C +G A++ ++ P +LL+TD+ MP MD Sbjct: 937 SQMILVVDDAALMRRRIEASLTAYGHSVQTCADGLEAWNWLQYNPTPALLITDLEMPNMD 996 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G L R + ++ I+ + N ++ L+K F +L+N+VN L + Sbjct: 997 GFTLIGRLRSEGATMPILVISSRLSEEWNREAQRLGADGFLTKGFSTNELINKVNTLTS 1055 >gi|182412210|ref|YP_001817276.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839424|gb|ACB73676.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1342 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 I + +D+D + F AL GY + + + +R P S+L+TD MP M G Sbjct: 1220 IYIVDDEDTVASFTKFALENKGYRASTVDTAVQCLEMLRANPGACSVLVTDQTMPGMTGT 1279 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAP-KNAKVLSKPFHLRDLVNEVNRLL 118 ELA + E P+L ++ ++G+ + + P A ++L KPF +L V+R L Sbjct: 1280 ELAMKVREFAPELPIIVMSGY-FLKITPQELAEIGKVELLGKPFTTDELAWTVHRAL 1335 >gi|168699463|ref|ZP_02731740.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 145 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMP 57 + +L+ EDDD +RRF L K G V+ +G A ++ E P LL+TD+VM Sbjct: 25 VRGTVLVVEDDDRVRRFTRGTLQKLGCTVLDAPSGEEAL-RLCETPGLTIDLLVTDVVMS 83 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + G ELA P +KV++++G A+ + L KPF L +V Sbjct: 84 GLSGRELAEAVARTRPGIKVLYVSGCTDDAVLRHRVRSTQVRFLQKPFTADTLAEKVRAA 143 Query: 118 L 118 L Sbjct: 144 L 144 >gi|182416653|ref|ZP_02948061.1| chemotaxis protein CheY [Clostridium butyricum 5521] gi|237667701|ref|ZP_04527685.1| chemotaxis protein CheY [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379492|gb|EDT76980.1| chemotaxis protein CheY [Clostridium butyricum 5521] gi|237656049|gb|EEP53605.1| chemotaxis protein CheY [Clostridium butyricum E4 str. BoNT E BL5262] Length = 121 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++KIL+ +D MR+ L + L GYEV+ NG +A +K L+L DI MPEM Sbjct: 1 MSKKILVCDDTMFMRKLLKEILVDNGYEVIGEAENGIAAVEKYNLLKPDLILMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DGI + E+D + K++ + G L+ K+ + KPF ++ V ++ Sbjct: 61 DGIAALNKIIEIDSEAKIIMCSAMGQEQTVLSAIKGGAKD--FIVKPFDNERVIQAVAKV 118 Query: 118 L 118 + Sbjct: 119 V 119 >gi|197120239|ref|YP_002140666.1| PAS/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197089599|gb|ACH40870.1| sensor histidine kinase response regulator, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 673 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK----VREEPFSLLLTDIVMPE 58 + IL+ ED+ D+R L L AGY V+ NG A ++ R E +L+L D++MP Sbjct: 553 ETILVVEDEPDLRLLLQNILSGAGYRVLLAENGQVAVEQYAAGARGE-IALVLMDMIMPG 611 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G E ++P KV++ +G+ + + ++L KP +L+ +V +L Sbjct: 612 MSGKEACHAIRAIEPAAKVLYTSGYTMDIIKSRDLLEEGTELLMKPVRPLELLKKVREML 671 >gi|37784396|gb|AAP43028.1| PilR [Xanthomonas campestris pv. campestris] Length = 464 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +G Sbjct: 4 TKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL P V IT F ++ L ++ +SKP + L V L + Sbjct: 64 IELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+ +D+ + + + L K G+ V ++G +A +KV E P L++ D+++P+MD Sbjct: 2 MSKKVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMD 61 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ ++ + + L ++ +T + L D ++KPF R+LV Sbjct: 62 GLEVCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADD-------YMTKPFSPRELVAR 114 Query: 114 VNRLL 118 V +L Sbjct: 115 VKAIL 119 >gi|332704290|ref|ZP_08424378.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] gi|332554439|gb|EGJ51483.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] Length = 228 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++R L +AL EV + NG A +K+ + + ++L D+ MP +DG+E Sbjct: 7 RILVVDDEKNIRITLSQALEDLA-EVDTAVNGEEALEKIGRQAYQVVLLDLRMPGIDGME 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + RR E P++K + IT V NA + K+ L KPF ++ V R+L Sbjct: 66 VLRRIAEQRPEIKFVIITAHGTV-----DNAVEAMKLGALDYLQKPFTPSEVREVVTRIL 120 >gi|307634828|gb|ADI84131.2| sensor histidine kinase response regulator [Geobacter sulfurreducens KN400] Length = 740 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGIE 63 LL +DDD +R L + G+ V++ ++ A ++ L+LTD++MP M+G E Sbjct: 622 LLVDDDDAVRDITALMLRRLGHTVITASDPDEAIHLCQQPGIVVDLILTDVIMPSMNGRE 681 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R KV++++G+ A + +A++L KPF L L + + + Sbjct: 682 MVRSILSHQKAAKVLYMSGYPADVVEERGAVDADARLLRKPFALDALREHIGKAM 736 >gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 1239 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D + LG++G+++ + N+G A ++ F L++ D+ MP++DG+ Sbjct: 902 ILVADDVRQNLDLISILLGRSGHQITTANDGVEAIHLFNQQAFDLIIMDVQMPQLDGLSA 961 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A R E++ +L + I A L D A A + +KP ++ L E+ R+L Sbjct: 962 ASQIRVVEVEKNLTRIPIIALTASVLQEDRAAAFEAGMDGFATKPIDIKALTREMMRVL 1020 >gi|150003409|ref|YP_001298153.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|294777719|ref|ZP_06743170.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|149931833|gb|ABR38531.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|294448787|gb|EFG17336.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 233 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD ++ + L GYEV++ +NG +E+ ++++DI MP MDG Sbjct: 3 KLLLVEDDANLCYIIRGGLEDMIGGYEVMTASNGEEGLKIWKEQHLDIIISDIEMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ RR E D + ++F +G + + KPF +L + LL +K Sbjct: 63 YEMVRRIRETDGFIPIVFTSGRVSPKDVVKGYELGVNNYIKKPFLAEELDAHIGALLKMK 122 >gi|146280699|ref|YP_001170852.1| histidine kinase-response regulator hybrid protein [Pseudomonas stutzeri A1501] gi|145568904|gb|ABP78010.1| histidine kinase-response regulator hybrid protein [Pseudomonas stutzeri A1501] Length = 649 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++ +L+ ED +R + + L +AGY + +A + +P LLLTD+ +P + Sbjct: 529 HEHVLVVEDMPSVRMLIAETLIEAGYRCSQAGDVETAQALLEADPSIDLLLTDVGLPRLS 588 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A P L V+ +TG+A A + + + +++ KPF DL+ ++ LL Sbjct: 589 GRQLAEWARRSRPALPVVLMTGYAEKASSREGFVDERMELVLKPFEGADLLGKIRALL 646 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ R + + L + GY+V+ G+ V L+ D+ +P+M G + Sbjct: 6 RLLIVDDNATTRYAMRRVLERHGYQVLEAGTGSDGLALVAGAMPDALILDVNLPDMSGFD 65 Query: 64 LARRATELDPDLKVMFITGFAAVAL 88 +AR+ DP+ ++ + +A ++ Sbjct: 66 IARQ-LRTDPNTALLPLIHVSAASI 89 >gi|120603747|ref|YP_968147.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|120563976|gb|ABM29720.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] Length = 501 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 51/101 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++ +R L L G++V + NG A + + P ++LTD+ MP MDG+ Sbjct: 5 RLLLVDDEEGIRTVLSLVLADMGHDVRTAANGNEALALLHDRPADVVLTDVRMPGMDGLA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 L E PD V+ +TG + L S L+KP Sbjct: 65 LLAAVREAWPDTGVIMLTGHGDMELAVKSLRLGATDFLTKP 105 >gi|117926946|ref|YP_867563.1| nitrogen metabolism transcriptional regulator, NtrC, Fis family [Magnetococcus sp. MC-1] gi|117610702|gb|ABK46157.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Magnetococcus sp. MC-1] Length = 504 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+A+DD +R L +AL +AGY+V + N + + L++TD+VMP G+ Sbjct: 7 QTILVADDDQAVRFVLEQALSRAGYKVHAFGNTQPLVNHFNQYGGDLIITDVVMPGGSGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + PDL ++ +T + + + + L+KPF + LV+ R L Sbjct: 67 DMVQSLKATYPDLPIIVMTAQSTLRNAVQAFERGAFEYLAKPFDINRLVDLTRRAL 122 >gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 229 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 +K+L+ ED++++R F++ L +AGY+ + G A ++E P + L DI++P +DG Sbjct: 2 RKVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGIDG 61 Query: 62 IELARRATELDPDLKVMFIT 81 E+ RR +D + ++ +T Sbjct: 62 FEVCRRIRAMDNKIGIIMLT 81 >gi|302038351|ref|YP_003798673.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606415|emb|CBK42748.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 809 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 ++ ILL ED+D +R L + V++ G A VR+ SLL+TD+VMP M Sbjct: 683 SETILLVEDNDMVRGLAQTVLVGQHHTVLAARTGEEALQLVRQRGGKISLLVTDMVMPGM 742 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+LA L P++ ++ +G++ + L KP+ L VN L Sbjct: 743 GGIQLAAELRTLQPEINIILTSGYSDREGSLLEQLDARTTFLPKPYTPDSLTKTVNAAL 801 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG---ASAYDKVREEPFSLLLTDIVMPEMDG 61 +LL ED++D + +AL + E V+ N + K+ E P +L D+ +P+ G Sbjct: 3 VLLIEDNEDDAELIQQALCERSTEAVTINWADRLQTGIQKLTECPVDAVLVDLSLPDSQG 62 Query: 62 IELARRATELDPDLKVMFITGF 83 +E R D V+ +TG Sbjct: 63 LETLDRVRAHAHDAPVIVLTGL 84 >gi|254881300|ref|ZP_05254010.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|319640302|ref|ZP_07995027.1| two-component system response regulator [Bacteroides sp. 3_1_40A] gi|254834093|gb|EET14402.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|317388077|gb|EFV68931.1| two-component system response regulator [Bacteroides sp. 3_1_40A] Length = 233 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD ++ + L GYEV++ +NG +E+ ++++DI MP MDG Sbjct: 3 KLLLVEDDANLCYIIRGGLEDMIGGYEVMTASNGEEGLKIWKEQHLDIIISDIEMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ RR E D + ++F +G + + KPF +L + LL +K Sbjct: 63 YEMVRRIRETDGFIPIVFTSGRVSPKDVVKGYELGVNNYIKKPFLAEELDAHIGALLKMK 122 >gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 230 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED +D L L +GYEVV+ +G A D+ R+E L+L D+++P +DG+ Sbjct: 4 EKILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLMLPGIDGL 63 Query: 63 ELARR 67 E+ RR Sbjct: 64 EVCRR 68 >gi|170693036|ref|ZP_02884197.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170142034|gb|EDT10201.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 259 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 11/121 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD + + + G+E+V ++G A +R EPF L++ D ++P M G E Sbjct: 2 RVLIVEDDPVHAKSAARVVEPLGHEIVEVSDGEQAVRLLRSEPFDLVIVDWLLPRMTGFE 61 Query: 64 L---ARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L RR P V+F+T + V L ++ A L KPF + +LV+ VN L Sbjct: 62 LLYWIRRTLGASP--AVLFVTSKSLEDDVVLAMEAGA---DDYLVKPFRVAELVSRVNAL 116 Query: 118 L 118 L Sbjct: 117 L 117 >gi|150025574|ref|YP_001296400.1| two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] gi|149772115|emb|CAL43591.1| Two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] Length = 229 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 14/123 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LLAEDD D L + L Y + +G A E F + + DI+MP+MDG Sbjct: 2 KKVLLAEDDFDFADVLKQYLELYNYHITWAKDGEEALLLFENETFDICVFDIMMPKMDGF 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 LA++ +++P+ +F+T + L D + KPF +LV +N Sbjct: 62 TLAQKIIDMNPETPFVFLTARKLKEDKLKGLQLGADD-------YIVKPFEADELVLRLN 114 Query: 116 RLL 118 +L Sbjct: 115 NIL 117 >gi|149183789|ref|ZP_01862191.1| two-component response regulator [Bacillus sp. SG-1] gi|148848507|gb|EDL62755.1| two-component response regulator [Bacillus sp. SG-1] Length = 123 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILLAED+D +R ++ L GYE+ +G A F L+L D +MP G+ Sbjct: 2 KKILLAEDEDVLRMLIMDTLEDEGYEIHEAADGEEAESLAVSTKFDLILLDYMMPLKTGL 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 E+ + R L+ D K+M +T A + D A LSKPF L +V + Sbjct: 62 EVIKIIRGDNLNKDTKIMMLT---AKSQKSDERTILEAGADYFLSKPFSPMLLAEKVEEI 118 Query: 118 LT 119 LT Sbjct: 119 LT 120 >gi|116670338|ref|YP_831271.1| response regulator receiver protein [Arthrobacter sp. FB24] gi|116610447|gb|ABK03171.1| response regulator receiver protein [Arthrobacter sp. FB24] Length = 200 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 7/105 (6%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 EDDDDMR L L +AG+EV S ++G + VR++ +++ D+ +P++DG E+ RR Sbjct: 11 EDDDDMRNLLEAVLLQAGFEVHSASSGREGVEVVRDKQANIVTLDVGLPDIDGFEVLRRI 70 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 + VM +TG PD +A ++KPF R++ Sbjct: 71 RQFS-HAYVMMLTGRTE---EPDVLTALHAGADDYITKPFRPREV 111 >gi|116622312|ref|YP_824468.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225474|gb|ABJ84183.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 781 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 6 LLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L DD+ M R L+K AL GY V+ +G A D ++ P L+L D+ MP M G Sbjct: 665 ILVVDDERMVRDLVKQALEDHGYTVLLAESGPMAIDVMKSRPGGIDLVLLDLSMPGMSGA 724 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ ++ PD+KVM +G++ + + L KPF L L + V Sbjct: 725 EVLPEIRKILPDVKVMLSSGYSEAESMQMFEGQQVSAFLQKPFTLNTLRDAV 776 >gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 235 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q ILL EDD + L+KAL K GY + + ++G + + L+L D++MP++D Sbjct: 1 MPQHILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLMMPKVD 60 Query: 61 GIELARR 67 G+E+ R+ Sbjct: 61 GMEVIRQ 67 >gi|239945362|ref|ZP_04697299.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991818|ref|ZP_04712482.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 220 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 2/113 (1%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELA 65 +AED+ D+R + L GYEV +G +A V EP +L+L D++MP +DG+ + Sbjct: 1 MAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVL-DVMMPALDGLAVC 59 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR ++ V+ +T ++V+ D L KPF L +LV V LL Sbjct: 60 RRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALL 112 >gi|254421081|ref|ZP_05034805.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] gi|196187258|gb|EDX82234.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] Length = 682 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 +IL ED+D +R + L + GYEV+ +G A E ++++D++MP +DG Sbjct: 563 RILFVEDEDAVRGIAARLLRQRGYEVIEAADGEEALILAEEYAGQIDMMISDVIMPGLDG 622 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++A + D VMFI+G+A + L KP ++ L V + L Sbjct: 623 PSLLKKARKYLGDAPVMFISGYAESDFSDLLQDEVGVSFLPKPLDIKTLAERVKQEL 679 >gi|159901861|gb|ABX10595.1| two-component system response regulator [uncultured planctomycete 6N14] Length = 209 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL +D +R L A+ + G+ V + N A + R+ P L + D+ MP G+E Sbjct: 21 SILLVDDTFVLRERLSTAMEQRGFRVETAGNYDEAIEVFRKRPTELAVLDLRMPGKSGLE 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R+ ++ PD +++ ++GF ++ + D+ LSKP D+++ R Sbjct: 81 LLRKLLDIAPDTRIIILSGFGSIPASIDAVRAGAVNFLSKPADADDILSAFMR 133 >gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile QCD-32g58] Length = 210 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 11/127 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ EDD +++ + + L GY+V + N+G K ++ + L++ DI+MP +D Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G + + + + ++F+T ALN + + K + ++KPF L+ V Sbjct: 61 GYGVCKMIRK-SSSVPIIFLT-----ALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVE 114 Query: 116 RLLTIKN 122 +L N Sbjct: 115 AILRRSN 121 >gi|170740444|ref|YP_001769099.1| response regulator receiver sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194718|gb|ACA16665.1| response regulator receiver sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 588 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +L+ +DD +R LG GY V +G SA + R+ P ++ D MP M+G E Sbjct: 450 LLVVDDDSAVREVTAAKLGGLGYAVREAGSGLSALQALERDGPVDGVVLDFAMPGMNGAE 509 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +A P L V+F+TGFA +++ KPF +L +V L Sbjct: 510 VAAEIGRRWPGLPVLFVTGFADTEALQAIGMAGEERIVQKPFRDGELERKVAAL 563 >gi|21232526|ref|NP_638443.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767389|ref|YP_242151.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114318|gb|AAM42367.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572721|gb|AAY48131.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 467 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +G Sbjct: 7 TKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL P V IT F ++ L ++ +SKP + L V L + Sbjct: 67 IELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELN 126 Query: 122 N 122 N Sbjct: 127 N 127 >gi|20807875|ref|NP_623046.1| CheY-like domain-containing protein [Thermoanaerobacter tengcongensis MB4] gi|20516439|gb|AAM24650.1| CheY-like receiver domains [Thermoanaerobacter tengcongensis MB4] Length = 119 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR + + K V+ NGA A +K +E L++ DI MPEMDGI Sbjct: 3 KILIVDDAAFMRMMIKDIISKNNLGSVIEAENGAVAVEKYVQEKPDLVIMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + DP+ K++ + A+ ++ + KPF +V + +LL Sbjct: 63 QAVKEIRAKDPNAKIIMCSAMGQQAMVIEAIQAGAKDFIVKPFQPDRVVEAIRKLL 118 >gi|325852083|ref|ZP_08171166.1| PglZ domain protein [Prevotella denticola CRIS 18C-A] gi|325484639|gb|EGC87555.1| PglZ domain protein [Prevotella denticola CRIS 18C-A] Length = 539 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN +LL DD+ ++ + I L K GYEV++ +NG+ A ++ + + F L+L D MP + Sbjct: 1 MNNGLLLWVDDEIELLKAHIIFLEKKGYEVITVSNGSDAIEQCQTQTFDLVLLDEQMPGL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E +R ++ P V+ +T + + K A L KP VN LLT Sbjct: 61 SGLETLQRIKDIQPATPVVMVTKSEEEDIMNQAIGAKIADYLIKP------VNPNQILLT 114 Query: 120 IK 121 +K Sbjct: 115 LK 116 >gi|303326352|ref|ZP_07356795.1| transcriptional regulatory protein ZraR [Desulfovibrio sp. 3_1_syn3] gi|302864268|gb|EFL87199.1| transcriptional regulatory protein ZraR [Desulfovibrio sp. 3_1_syn3] Length = 455 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 40/72 (55%) Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD 74 R L LG GY V +G A D+VRE+ F +LTD+ M MDGI + E +P Sbjct: 15 RGMLKTMLGSWGYTVDEATDGDEAVDRVREKAFDAVLTDVRMARMDGIHALKGILEYNPA 74 Query: 75 LKVMFITGFAAV 86 L V+ +T +++V Sbjct: 75 LPVVLMTAYSSV 86 >gi|257866406|ref|ZP_05646059.1| chemotaxis signal receiving protein CheY [Enterococcus casseliflavus EC30] gi|257871317|ref|ZP_05650970.1| chemotaxis signal receiving protein CheY [Enterococcus gallinarum EG2] gi|257873078|ref|ZP_05652731.1| chemotaxis signal receiving protein CheY [Enterococcus casseliflavus EC10] gi|257876019|ref|ZP_05655672.1| chemotaxis signal receiving protein CheY [Enterococcus casseliflavus EC20] gi|257800364|gb|EEV29392.1| chemotaxis signal receiving protein CheY [Enterococcus casseliflavus EC30] gi|257805481|gb|EEV34303.1| chemotaxis signal receiving protein CheY [Enterococcus gallinarum EG2] gi|257807242|gb|EEV36064.1| chemotaxis signal receiving protein CheY [Enterococcus casseliflavus EC10] gi|257810185|gb|EEV39005.1| chemotaxis signal receiving protein CheY [Enterococcus casseliflavus EC20] Length = 120 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++K+L+ +D MR L L K GYEVV NG A++K + L+ DI MPE+ Sbjct: 1 MSKKVLIVDDAVFMRMKLKDILEKNGYEVVGEAQNGQEAFEKYQATTPDLVTMDITMPEV 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DG+E + D KV+ + + D+ + KPF ++ +++ Sbjct: 61 DGLEALKMIRTFDAQAKVVMCSAMGQQGMVMDAIRAGAVDFIVKPFDTDRVITAIDK 117 >gi|83593667|ref|YP_427419.1| response regulator receiver domain-containing protein [Rhodospirillum rubrum ATCC 11170] gi|83576581|gb|ABC23132.1| Response regulator receiver domain protein (CheY) [Rhodospirillum rubrum ATCC 11170] Length = 126 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +R L + L KAG+ V +G A D V P +LLTD+ MPE DGI L Sbjct: 4 ILIVDDVPVVRLVLARILKKAGHSVYEAGSGVEALDIVAHRPIEVLLTDLWMPEGDGIAL 63 Query: 65 ARRATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R P + + ++G + A + A + VL+KP DL++ + R L Sbjct: 64 LGRIKSGHPRIARIAMSGGTPHTSLGASLAAAGAVEGVIVLTKPIEKADLLDAIERSLA 122 >gi|27379387|ref|NP_770916.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27352538|dbj|BAC49541.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 698 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MDGI 62 I + EDD +R F+ L GY+ V+ + +A + + F LL TD+V+P M G Sbjct: 576 IFVVEDDPLVRNFVTAQLQSLGYQTVAAPDSRAALQAIEAGQAFDLLFTDVVIPGGMSGR 635 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA P LKV++ +G+ A+ +L+KP+ L + + L Sbjct: 636 ELAEEVARRRPGLKVLYTSGYTDNAIVHHGKLDDGVLLLTKPYRRNQLAEMIRKAL 691 >gi|118579155|ref|YP_900405.1| signal transduction histidine kinase NtrB [Pelobacter propionicus DSM 2379] gi|118501865|gb|ABK98347.1| signal transduction histidine kinase, nitrogen specific, NtrB [Pelobacter propionicus DSM 2379] Length = 890 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL +D++ +R L + G++VV+ +G A + R +P + ++ D+ MP M G Sbjct: 775 VLLVDDEEIIRTIGTDMLTELGFDVVTAQDGREAVELFRRDPGGITFVVLDLTMPHMSGE 834 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R +DP +KV+ +G+ + A + KP+ L L + + +L Sbjct: 835 ETFREMRRIDPAVKVIMSSGYNEYEVTQKFVGKGLAGFIQKPYSLSILTDVIRNIL 890 >gi|119357584|ref|YP_912228.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119354933|gb|ABL65804.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 931 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL +D+ R + + + + G+++ SC++ A + R+ P F L++TD+ MPEM GI Sbjct: 810 ILFVDDELATIRIMERMMTRIGFKIQSCSSPLQALELFRKNPETFDLVITDLTMPEMTGI 869 Query: 63 ELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 LA ++ L ++ +TG+ + + K+L KP ++ +L++ V ++ K Sbjct: 870 ALAGELRKISSRLPIILMTGYGEEIETMSSLSLVGICKLLKKPVNMAELISAVKEVILHK 929 >gi|332829438|gb|EGK02087.1| hypothetical protein HMPREF9455_01721 [Dysgonomonas gadei ATCC BAA-286] Length = 229 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 56/116 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ + L K L + G+EV +G + + + L++TDI++P +G Sbjct: 2 KKILVIEDEKRIAELLGKGLSEFGFEVTLAFDGDTGKRLISSNLYDLIITDIILPHHNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R E + ++ +T A D + KPF LR+L +N LL Sbjct: 62 EITRFVKEKYLHVPIIMLTALGATDDKLDGFDAGADDYMVKPFDLRELNARINVLL 117 >gi|325567502|ref|ZP_08144169.1| sporulation initiation phosphotransferase F [Enterococcus casseliflavus ATCC 12755] gi|325158935|gb|EGC71081.1| sporulation initiation phosphotransferase F [Enterococcus casseliflavus ATCC 12755] Length = 126 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++K+L+ +D MR L L K GYEVV NG A++K + L+ DI MPE+ Sbjct: 7 MSKKVLIVDDAVFMRMKLKDILEKNGYEVVGEAQNGQEAFEKYQATTPDLVTMDITMPEV 66 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DG+E + D KV+ + + D+ + KPF ++ +++ Sbjct: 67 DGLEALKMIRTFDAQAKVVMCSAMGQQGMVMDAIRAGAVDFIVKPFDTDRVITAIDK 123 >gi|319411708|emb|CBQ73752.1| related to SKN7-transcription factor [Sporisorium reilianum] Length = 1049 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD+ RR K L G + ++G +A +K+ E + L+L DI+MP +DG+ Sbjct: 749 RVLLVDDDEVCRRLSSKFLQVFGCSIDYASDGMTAVNKMNHEKYDLVLMDIIMPNLDGMS 808 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + DP ++ +T + + + + +L KPF L+N + + L Sbjct: 809 ATSLIRQFDPSTPIISMTSNSGPSELINYMSSGMTDILPKPFTKEGLLNMLEKHL 863 >gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13] Length = 223 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + R L L GYE + G S +K +E + L+L D+++PE+ G+E+ Sbjct: 4 ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPELSGLEV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 RR D V+ +T ++ PD + + ++KPF + +L+ V Sbjct: 64 LRRIRATDTSTPVILLTARNSI---PDKVSGLDLGANDYVTKPFEIEELLARV 113 >gi|294677335|ref|YP_003577950.1| nitrogen assimilation regulatory protein NtrC [Rhodobacter capsulatus SB 1003] gi|294476155|gb|ADE85543.1| nitrogen assimilation regulatory protein NtrC [Rhodobacter capsulatus SB 1003] Length = 458 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + + + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATASLMTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E R P L V+ I+ + + L KPF L DL+ R L + Sbjct: 61 GLEALPRIARERPGLPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRAARALEL 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 972 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD + L K+GY V + N+G A + E+ F L+L D+ MP MDG+ Sbjct: 845 RRILLAEDDALSSLTCKRMLEKSGYSVAAANDGQKALQLLTEQDFDLILMDVQMPVMDGV 904 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 E + R + + + I A A++ D A ++KP LV V R+ Sbjct: 905 EATKAIRGSSILGVKSSIPIVAMTAYAMSGDKEKFLASGMDDYIAKPVDKEALVEVVERV 964 Query: 118 LTIK 121 L +K Sbjct: 965 LRMK 968 >gi|162452548|ref|YP_001614915.1| nitrogen regulation protein NR(I) [Sorangium cellulosum 'So ce 56'] gi|161163130|emb|CAN94435.1| Nitrogen regulation protein NR(I) [Sorangium cellulosum 'So ce 56'] Length = 493 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 ++L+ +D+ +R+ L A + GYEVV +A + +R+ +PF L+LTD+VMP+ G Sbjct: 14 RVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVMPDGSG 73 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 IE+ A +V+ +T + V D+ ++KPF +L Sbjct: 74 IEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELT 123 >gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae NTUH-K2044] gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] Length = 238 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL EDD+D+ L L GY++V +G A ++ + + ++ D+++P +D Sbjct: 1 MAKTILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLMLPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RR ++ L V+ I+ + L+KPF L +L+ V L Sbjct: 61 GLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118 >gi|322385266|ref|ZP_08058912.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270689|gb|EFX53603.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 244 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED+ +R+ + + + G +V++ NG A+ K +E P +LLTDI MP+M+G Sbjct: 4 IMIVEDEYLVRQGIASLVNYEQFGMQVIAQAENGIEAWQKFQENPADILLTDINMPQMNG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 +ELA+ + P ++F+TG+ Sbjct: 64 LELAKLVRDQAPKCHIVFLTGY 85 >gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185] gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185] Length = 231 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++R L ++ AG++V G+ + F L + D+++P+MDG Sbjct: 7 RILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPDMDGFA 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R E +L ++F+T +V ++KPF L ++V + +L Sbjct: 67 VTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVL 121 >gi|255535912|ref|YP_003096283.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] gi|255342108|gb|ACU08221.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] Length = 118 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD+ + + + L K GYEV+ NG A DK+ E L++TDI+MP GIE+ Sbjct: 3 ILVAEDDELILKTIEHKLVKEGYEVILTRNGKDAIDKILETEVDLIITDIMMPFASGIEI 62 Query: 65 ARRATELDPDLKVMFITGFAA--VALNP-DSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ V+ ++ V LN D A A + KPF +L+ V R+ Sbjct: 63 LSAIKIAGKNIPVIMLSSMGQEDVILNAFDLGA---ADFIVKPFSPNELMLRVKRI 115 >gi|296120947|ref|YP_003628725.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296013287|gb|ADG66526.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 337 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 40/63 (63%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DDD + L L AGYEV+ +NG +A + + +EP L+++D MP M GI+ Sbjct: 2 KILIVDDDDMILEMLEHTLVPAGYEVLRAHNGTTALEILSQEPCRLVISDWDMPGMSGID 61 Query: 64 LAR 66 L R Sbjct: 62 LCR 64 >gi|193215985|ref|YP_001997184.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] gi|193089462|gb|ACF14737.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] Length = 123 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEM 59 N+K +L DD+++ R L+ + + YEV+ +G A K + ++TD++MP M Sbjct: 5 NKKTVLVVDDEELIRELLYDVLEGEYEVLLAEDGEQALKKYEINSSQIDAVITDLIMPRM 64 Query: 60 DGIELARRATELDPDLKVMFITGF-AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L + E +P L V+ ITGF + + PK A + KPF + L++++ L+ Sbjct: 65 RGDKLLEKLREKNPSLPVIIITGFEKEIDVIKILQEPKVA-FIHKPFDIEQLLSQLESLM 123 >gi|163853505|ref|YP_001641548.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665110|gb|ABY32477.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 587 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ ++ F +AL + GY V + A ++ P F ++ TD+VMP M+G+ Sbjct: 467 VLLVEDNREVGAFATQALAELGYGTVWAMDAEQALAELDRTPERFDVVFTDVVMPGMNGV 526 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ELAR P + ++ +G++ V L D + +L KP+ + DL Sbjct: 527 ELARTILGRTPGMPIVLSSGYSHV-LAEDGH--HGFPLLHKPYSVEDL 571 >gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ + RF+ L GYE++ +NG + + L+L DI++P+++G+E Sbjct: 3 KILIVEDDEKLARFVELELLHEGYEILKADNGRLGLEIAEKGEVDLVLLDIMIPQINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + RR + DL V+ +T AV ++KPF + +L+ + Sbjct: 63 VLRRIRK-TSDLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARI 112 >gi|319942911|ref|ZP_08017194.1| twitching motility regulator PilH [Lautropia mirabilis ATCC 51599] gi|319743453|gb|EFV95857.1| twitching motility regulator PilH [Lautropia mirabilis ATCC 51599] Length = 127 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D R F+ L K GYEV++ NG A +KV+ E S+++ D+VMP G Sbjct: 7 RKILIVDDSPTERFFMASLLVKEGYEVITAENGDEALEKVQAERPSIVIMDVVMPGKSGF 66 Query: 63 ELARRATELDPDLK 76 + A RA DP +K Sbjct: 67 Q-ATRAIARDPAMK 79 >gi|291538509|emb|CBL11620.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Roseburia intestinalis XB6B4] Length = 115 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 10 DDDDMRRFLIK-ALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67 DD R +IK L K GYE+ + NGA A +K E L+L DI MP+MDGI+ ++ Sbjct: 4 DDAAFMRMMIKDILTKNGYEIAAEAENGAIAVEKYPEAKPDLVLMDITMPDMDGIQALKK 63 Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+D + V+ + A+ ++ + KPF ++ V +++ Sbjct: 64 IKEIDANANVIMCSAMGQQAMVIEAIQSGAKDFIVKPFQAERVLEAVKKVV 114 >gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] Length = 257 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ+IL+ +DD +R L + L GY V + ++G+ ++ E FSL++ D+++P D Sbjct: 21 MNQRILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNED 80 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + R + D+ ++ +T + A L KPF+ ++L+ + +L Sbjct: 81 GISICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVL 138 >gi|237724088|ref|ZP_04554569.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229437548|gb|EEO47625.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1344 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQVRIPNIIVSDIMMPVMDGIEL 1152 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 >gi|254458730|ref|ZP_05072154.1| response regulator receiver modulated metal dependent phosphohydrolase [Campylobacterales bacterium GD 1] gi|207084496|gb|EDZ61784.1| response regulator receiver modulated metal dependent phosphohydrolase [Campylobacterales bacterium GD 1] Length = 363 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D D+ + + L K G+E + +G +A V+E + L+L DI+MP MDGI+ Sbjct: 7 KVLIVDDVDENLKLVATILEKVGFETKTARDGLTALRLVKESKYDLILLDIMMPIMDGIQ 66 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R + + V+F+T + + + + KPF +L+ VN L +K Sbjct: 67 TCRYLKVEPTTESIPVIFLTASSDRETLTKAYSVGGVDYIKKPFFKEELLARVNLHLELK 126 Query: 122 N 122 + Sbjct: 127 D 127 >gi|189464026|ref|ZP_03012811.1| hypothetical protein BACINT_00361 [Bacteroides intestinalis DSM 17393] gi|189438599|gb|EDV07584.1| hypothetical protein BACINT_00361 [Bacteroides intestinalis DSM 17393] Length = 1428 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R L + +G +EV +G S ++K R L++ D++MP M G Sbjct: 1171 RKVLIIEDDNDIRELLKEEIGTY-FEVEVAVDGTSGFEKARTYDADLIICDVLMPGMSGF 1229 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDLVNE 113 E+ +R LK F T + L ++P+ +SKPF ++ L+ Sbjct: 1230 EVTKR-------LKSDFATSHIPIILLTALSSPEKQLEGIESGADAYISKPFSIKFLLAR 1282 Query: 114 VNRLL 118 RL+ Sbjct: 1283 AFRLI 1287 >gi|182415721|ref|YP_001820787.1| LytTR family two component transcriptional regulator [Opitutus terrae PB90-1] gi|177842935|gb|ACB77187.1| two component transcriptional regulator, LytTR family [Opitutus terrae PB90-1] Length = 268 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALG-KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M ++L+ +D+ R + L K G E+V C NG +A + +R++ +L D+ MPE Sbjct: 1 MKVRVLIVDDEPLARSVIRHWLADKRGAEIVGECGNGVAALELLRQQRVDVLFLDVQMPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 MDG L RRA ++ + V+F+T + AL + A L KPF Sbjct: 61 MDGFALLRRARAIEIPV-VIFVTAYDKYALQ--AFAAHALDYLLKPF 104 >gi|121533632|ref|ZP_01665459.1| response regulator receiver protein [Thermosinus carboxydivorans Nor1] gi|121307623|gb|EAX48538.1| response regulator receiver protein [Thermosinus carboxydivorans Nor1] Length = 121 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M K+L+ +D MR L L G+EV NG A K E L+ DI MPEM Sbjct: 1 MGAKVLIVDDAAFMRMVLKNILTNNGFEVAGEAENGKEAVIKYTELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 DGI + +LDP K++ + A+ ++ + + KPF DLV E Sbjct: 61 DGITAVKEIKKLDPQAKIIMCSAMGQQAMVIEAIKAGASDFIVKPFK-EDLVVE 113 >gi|116620577|ref|YP_822733.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116223739|gb|ABJ82448.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 124 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 8/121 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ +DD + R + + LG +V++ A E LL++D+ MPEMDG Sbjct: 5 TRTVLIVDDDPQILRLVQRILGGREVKVLAAPRPLEALRICEGERVDLLISDMAMPEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLT 119 LA + +L P+ V+ I+G D KN +V L KPF DL+ + +L Sbjct: 65 NRLADKVLKLRPETSVLLISGVK------DGAHTKNGRVRFLKKPFFPADLIRILGEMLP 118 Query: 120 I 120 + Sbjct: 119 V 119 >gi|117923614|ref|YP_864231.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607370|gb|ABK42825.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 899 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED D + + L K Y + NG A + V++ + L+L DI MPEMDG+ Sbjct: 774 ILLAEDSPDNVLLVERFLKKTAYRLDVVGNGREALESVKKHHYDLILMDIQMPEMDGLSA 833 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 R R+ E + + A A D A A L+KPF +L+ + R Sbjct: 834 TRTLRSWEREQGTPRTPVLALTAHAFREDREASIEAGCDGHLTKPFKKDELLKTIQR 890 >gi|323698589|ref|ZP_08110501.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. ND132] gi|323458521|gb|EGB14386.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio desulfuricans ND132] Length = 443 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R L L +GYEV + + ++ ++ F L++TD+++P MDGI++ Sbjct: 6 ILVIEDERIARENLTHVLTGSGYEVTAIASAEEGLRELDKKEFDLVITDLMLPGMDGIQI 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 P V+ +TG A VA + ++KP L +L +V R L Sbjct: 66 LEHIRAHHPLTIVIVVTGHATVANAVKAMQKGAHSYIAKPLKLDELRLQVERAL 119 >gi|260911683|ref|ZP_05918262.1| DNA-binding response regulator [Prevotella sp. oral taxon 472 str. F0295] gi|260634180|gb|EEX52291.1| DNA-binding response regulator [Prevotella sp. oral taxon 472 str. F0295] Length = 174 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GY C +G + Y + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYMAELCPDGEAGYKAFLKTKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV V +L Sbjct: 66 LAQEIRQANSEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVFRVEAIL 120 >gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074] gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074] gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRSDGHTVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|218680418|ref|ZP_03528315.1| chemotaxis two-component response regulator protein [Rhizobium etli CIAT 894] Length = 122 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R L AGY V +GA K + F L++TD+ MP MD Sbjct: 1 MSANILTVDDSASIRLTTKVTLSNAGYSVTEAADGAEGLAKAKSSSFDLIVTDLNMPVMD 60 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + +L + ++F+T + L + A L+KPF +LV V ++L Sbjct: 61 GLTMIEELRKLPGQAGVPIIFLTTESDADLKARAKAAGATGWLTKPFDPENLVKIVKKVL 120 >gi|197121525|ref|YP_002133476.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171374|gb|ACG72347.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 501 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ ++RR L L GY V+ + + ++ EP L + DI +P MDG+ L Sbjct: 30 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLTL 89 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 RA EL DL V+ I+G A + D+ SKP RD V L++++N Sbjct: 90 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVD-RDRV-----LVSVRN 141 >gi|110597240|ref|ZP_01385528.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110341076|gb|EAT59544.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 1275 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 IL +D+ R + + + G+ + + N+ A + R+ E F+L++TD+ MPEM+GI Sbjct: 1152 ILFVDDEPATLRMMTLMMTRLGFRIEARNSPLEALELFRKKREQFNLVITDLTMPEMNGI 1211 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLLT 119 + A + ++ + V+ +TG+ + P K ++L KP +L + + +N +L+ Sbjct: 1212 DFAEQLHKISSETPVILMTGYGK-DIEPTDALSKYGIRRILKKPINLAQIASIINEVLS 1269 >gi|104779532|ref|YP_606030.1| sigma-54 dependent response regulator [Pseudomonas entomophila L48] gi|95108519|emb|CAK13213.1| putative sigma-54 dependent response regulator [Pseudomonas entomophila L48] Length = 470 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +VV + ++ + ++++DI MP +DG++ Sbjct: 12 QVILVDDDPHLRQALSQTLDLAGLKVVPLADAQGLAARIEADWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + D +L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 72 LLEQLHARDSELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFATDALLDSVRRALALR 129 >gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 226 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD D+ +L K L ++GY V + +NG + E + LLL D ++PE+DG+ Sbjct: 2 RVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R V+ ++ V L KPF +L+ + LL Sbjct: 62 VVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALL 116 >gi|39995948|ref|NP_951899.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39982712|gb|AAR34172.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 787 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++IL +D++D+ + L + GY+VV+ A +P F L++TD MP + Sbjct: 662 DERILYVDDEEDLVATTGEMLRRLGYDVVATTGSVEALKLFTAQPGLFDLIITDQTMPLL 721 Query: 60 DGIELARRATELDPDLKVMFITGFA---AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G EL R L PD+ V+ +GF + + + A VL KP ++ V R Sbjct: 722 TGTELTRALRRLRPDVPVLLCSGFIDQDERTILEQARSAGIADVLRKPVDRDEMARAVRR 781 Query: 117 LL 118 +L Sbjct: 782 IL 783 >gi|116620233|ref|YP_822389.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116223395|gb|ABJ82104.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 714 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIEL 64 L+ ED+D +R K L K+G+ V+ +G +A +R + +LL D+ +P E+ Sbjct: 601 LVVEDEDSLRGPAAKMLRKSGFTVLEAPDGTTALGIIRGDRAIEVLLLDVTLPGTPSQEV 660 Query: 65 ARRATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A L P ++V+ + FAA +L D + + KP+ LRDLV V + L+ Sbjct: 661 LAEAKRLRPAMRVIVTSAYGKEFAATSLQADVE-----RFIRKPYSLRDLVELVRQTLS 714 >gi|332526419|ref|ZP_08402540.1| chemotaxis response regulator CheY [Rubrivivax benzoatilyticus JA2] gi|332110550|gb|EGJ10873.1| chemotaxis response regulator CheY [Rubrivivax benzoatilyticus JA2] Length = 124 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +L +D MRR + L GYEVV+ ++G A +RE P LLLTDIVMP DG+ Sbjct: 1 MLFVDDSVTMRRSIELTLQTGGYEVVTASDGTVALALLREGLRP-DLLLTDIVMPGTDGL 59 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R A +L ++ +T A + A L KP R L+ V R + Sbjct: 60 TLIREARKLLRFTPIVALTTQGAPEMRQQGRADGATAWLLKPTGGRGLLELVARFV 115 >gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL B-59395] gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL B-59395] Length = 227 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V + +G A +KV E L++ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAERPDLMVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 + RR DL ++ +T +V+ L KPF L + Sbjct: 62 VCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEE 107 >gi|306826271|ref|ZP_07459605.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431547|gb|EFM34529.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 232 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G + + P +F T ++L D + KPF R+LV Sbjct: 61 GYDFISEVQYIAPAQPFLFTTAKTSEQDKIYGLSLGADD-------FIVKPFSPRELVLR 113 Query: 114 VNRLL 118 VN +L Sbjct: 114 VNNIL 118 >gi|322421027|ref|YP_004200250.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127414|gb|ADW14974.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1573 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 K+LL +D++ ++ L G+ + +G A + R+EP ++ D+ MP MDG Sbjct: 1458 KVLLVDDEETVQVTGSIMLRTLGFTPIVAADGRQALELYRQEPDIGFVILDLTMPHMDGE 1517 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R ELDP++KV+ +G+ ++ + KP+ L DL V RL Sbjct: 1518 QCLRGLRELDPEVKVIMSSGYNEQDVSQRFAGKGFTCFIQKPYRLSDLKEVVRRL 1572 >gi|218778156|ref|YP_002429474.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759540|gb|ACL02006.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 866 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++ILL +D+ + + + L + GY+V + + A + + P F L+++D+ MP M Sbjct: 742 DERILLIDDEAPIVKLETQMLQRLGYQVTARTSSLEALEAFQTMPYGFDLIISDMTMPNM 801 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 G +LA + PD+ ++ TGF+ LN K K L KP +L V R+L Sbjct: 802 TGDQLAEEVIAVRPDIPIIICTGFSE-RLNEAGAGAKGIKAFLMKPVVRSELAQIVRRVL 860 >gi|160891726|ref|ZP_02072729.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492] gi|317478215|ref|ZP_07937381.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156859133|gb|EDO52564.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492] gi|316905608|gb|EFV27396.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1303 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 9/121 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ D +FL ++L + Y V+ NG A + + +E L+++DI+MPEMDG+EL Sbjct: 1055 ILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKEDIDLVVSDIMMPEMDGLEL 1113 Query: 65 ARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + D++ ++ +T A+ + + ++KPF++ L +N+++ Sbjct: 1114 ---CSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKIIE 1170 Query: 120 I 120 + Sbjct: 1171 M 1171 >gi|197118094|ref|YP_002138521.1| response receiver sensor diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197087454|gb|ACH38725.1| response receiver sensor diguanylate cyclase/phosphodiesterase, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 869 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +FL + L GY V+ + A +++ E L+++DI+MPEMDG Sbjct: 20 RRILIVDDSPAQTKFLTQVLAAQGYGVLVSQSAEEALEQIAELSPDLVISDILMPEMDGF 79 Query: 63 ELARRATELDP--DLKVMFIT 81 EL RR LD L V+ +T Sbjct: 80 ELCRRIRGLDQMNSLPVILLT 100 >gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 5 ILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILLAED +R+ L + + Y+V+ NG A D L+L D+ MP M GIE Sbjct: 4 ILLAEDQQIVRQGLKMMIEHRQRYQVIEAENGQEAVDLAGRHVIDLVLMDVRMPVMTGIE 63 Query: 64 LARRATELDPDLKVMFITGF 83 +R E DP++K++ +T F Sbjct: 64 ATKRLIERDPNVKIVMLTTF 83 >gi|15674899|ref|NP_269073.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19745942|ref|NP_607078.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21910129|ref|NP_664397.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|28896172|ref|NP_802522.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50914043|ref|YP_060015.1| two-component response regulator [Streptococcus pyogenes MGAS10394] gi|56808909|ref|ZP_00366618.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71903325|ref|YP_280128.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71910493|ref|YP_282043.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94990247|ref|YP_598347.1| two-component response regulator [Streptococcus pyogenes MGAS10270] gi|94994168|ref|YP_602266.1| two-component response regulator [Streptococcus pyogenes MGAS10750] gi|139473961|ref|YP_001128677.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209559227|ref|YP_002285699.1| DNA-binding response regulator [Streptococcus pyogenes NZ131] gi|251782240|ref|YP_002996542.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|306827529|ref|ZP_07460812.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|13622039|gb|AAK33794.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19748100|gb|AAL97577.1| putative two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21904321|gb|AAM79200.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|28811422|dbj|BAC64355.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50903117|gb|AAT86832.1| Two-component response regulator [Streptococcus pyogenes MGAS10394] gi|71802420|gb|AAX71773.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71853275|gb|AAZ51298.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94543755|gb|ABF33803.1| Two-component response regulator [Streptococcus pyogenes MGAS10270] gi|94547676|gb|ABF37722.1| Two-component response regulator [Streptococcus pyogenes MGAS10750] gi|134272208|emb|CAM30454.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209540428|gb|ACI61004.1| DNA-binding response regulator [Streptococcus pyogenes NZ131] gi|242390869|dbj|BAH81328.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|304430327|gb|EFM33353.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|323127092|gb|ADX24389.1| DNA-binding response regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 222 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ M L A+ GY+V NG A DK ++ + +++ DI+MP GIE Sbjct: 2 KILLAEDEWQMSNVLTTAMTHQGYDVDVVFNGQEAIDKAKDNAYDIMILDIMMPIKSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + ++ +T A + D+ A L+KPF L++L+ Sbjct: 62 ALKEIRASGNCSHIIMLTAMAEINDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|332829569|gb|EGK02215.1| hypothetical protein HMPREF9455_01485 [Dysgonomonas gadei ATCC BAA-286] Length = 1347 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ ED+ DM+ F+ K L GY V+ N+G + +E L+++DI+MP MDGI Sbjct: 1096 QTILIVEDNPDMQEFIRKNL-ILGYNVLLANDGIEGIKLLEKEEIDLIISDIMMPNMDGI 1154 Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + L + ++ +T +A ++ + KPF + L ++ LL Sbjct: 1155 EFCNKVKNSLLWNHIPLIMLTAKTNIASKIEALETGADAYIEKPFSISFLSVQIRNLL 1212 >gi|331005211|ref|ZP_08328605.1| sigma-54 dependent DNA-binding response regulator FleR [gamma proteobacterium IMCC1989] gi|330420993|gb|EGG95265.1| sigma-54 dependent DNA-binding response regulator FleR [gamma proteobacterium IMCC1989] Length = 562 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 +KIL+ EDD +R L L A Y VVS N A + + R++ ++++DI M M G Sbjct: 38 KKILVVEDDFSLREALEDTLSLANYSVVSAKNAEQAIELLSRQKDILMVVSDINMGVMSG 97 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L + TE + + +T + +V + D+ L KPF ++LV+ V+R L Sbjct: 98 HDLLQYITEQHAHIPALLMTAYGSVRDSVDAIRNGAVDYLVKPFEPKELVDIVHRQL 154 >gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] Length = 244 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ ++ AL G+EV + + G A R+ ++ D ++P+ DG+E Sbjct: 20 RVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDFDGLE 79 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR +P + V+F+T AV ++KPF L +LV + L+ Sbjct: 80 VLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALM 134 >gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 236 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 15/122 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GYEVV +G A DKV E L+L DI++P+ D Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ R + D+ ++ +T + L D ++KPF R+L+ Sbjct: 61 GIEVCREVRK-KYDMPIIMLTAKDSEIDKVLGLELGADD-------YVTKPFSTRELIAR 112 Query: 114 VN 115 V Sbjct: 113 VK 114 >gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 232 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V + N+G +K + ++L D++MP MDG Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDG 62 Query: 62 IELARRATELDPDLKVMFIT 81 +E+ RR +L + VM +T Sbjct: 63 LEVCRRIRKLG-NTPVMMLT 81 >gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 238 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +DD ++R + +A GY V + + G +A ++V +P ++ D++MPE+DG+ Sbjct: 12 RSLLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVMMPELDGV 71 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E+ RR + V+ +T AV D A +A L KPF L +L + LL Sbjct: 72 EVCRRLRGVGDHTPVLLLTARDAVG---DRVAGLDAGADDYLVKPFALAELHARMRALL 127 >gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 225 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R + L K GY V N+G A + ++ L L D++MP +G EL Sbjct: 4 ILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVMMPNKNGWEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L DL ++ +T +SKPF +L+ V LL Sbjct: 64 CREIRDL-YDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALL 116 >gi|325856332|ref|ZP_08172048.1| transcriptional regulatory protein RprY [Prevotella denticola CRIS 18C-A] gi|327312509|ref|YP_004327946.1| transcriptional regulatory protein RprY [Prevotella denticola F0289] gi|325483516|gb|EGC86488.1| transcriptional regulatory protein RprY [Prevotella denticola CRIS 18C-A] gi|326944607|gb|AEA20492.1| transcriptional regulatory protein RprY [Prevotella denticola F0289] Length = 235 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KILL EDD+++ L + L GY+ C +G + Y + + + + D++MP+ DG Sbjct: 4 NLKILLCEDDENLGTLLSEYLQAKGYQADLCPDGEAGYRAFLKNKYDICVLDVMMPKKDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T + ++KPF + +LV + +L Sbjct: 64 FTLAQEIRQANTEVPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|270295181|ref|ZP_06201382.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274428|gb|EFA20289.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1303 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 9/121 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ D +FL ++L + Y V+ NG A + + +E L+++DI+MPEMDG+EL Sbjct: 1055 ILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKEDIDLVVSDIMMPEMDGLEL 1113 Query: 65 ARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + D++ ++ +T A+ + + ++KPF++ L +N+++ Sbjct: 1114 ---CSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKIIE 1170 Query: 120 I 120 + Sbjct: 1171 M 1171 >gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1452 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + L K+GY V + N+G A ++ E F L+L D+ MP MDG+E Sbjct: 1330 RILLAEDDSLSSLTCKRMLEKSGYSVTAANDGQEALQRLTENDFDLILMDVQMPIMDGVE 1389 Query: 64 LA---RRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+A+ L + ++ +T +A A ++K R L + R+L Sbjct: 1390 ATKAIRKASNLGAKSSIPIVAMTAYAMTGDKESFLAAGMNDYIAKSVDKRALFEAIERVL 1449 Query: 119 TIK 121 K Sbjct: 1450 HTK 1452 >gi|262196998|ref|YP_003268207.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Haliangium ochraceum DSM 14365] gi|262080345|gb|ACY16314.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Haliangium ochraceum DSM 14365] Length = 1131 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +DDD +R + L AGY V +G +A + + LLL DI+MPEMDG Sbjct: 798 HRVLVVDDDDAIRAICREVLENAGYAVRDVPDGYAALTETKRYRPDLLLLDIMMPEMDGF 857 Query: 63 ELARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + A R +T + P ++F++ A A + ++KPF +LV V++ Sbjct: 858 QTAERLKSDPSTSMTP---IIFLSAKGATADKVRAFRSGAEDYVTKPFDAAELVARVSKT 914 Query: 118 L 118 + Sbjct: 915 V 915 >gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium modesticaldum Ice1] gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium modesticaldum Ice1] Length = 853 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD MR L +AL K GY V+ +GA+A + + ++L D++MP +DG L Sbjct: 8 ILVADDDPAMRFMLRRALEKDGYAVIEAEDGAAALEAYEQAEPDIVLMDVLMPVLDGFAL 67 Query: 65 ARRATELDPDLK--VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L + V+ ITG A + ++KP L V RLL Sbjct: 68 CAQLQTLPRHRRAPVLMITGLDDDASVEKAYQSGATDYITKPIQWAVLRQRVRRLL 123 >gi|126697911|ref|YP_001086808.1| two-component response regulator [Clostridium difficile 630] gi|255099512|ref|ZP_05328489.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255305368|ref|ZP_05349540.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|115249348|emb|CAJ67161.1| Two-component response regulator [Clostridium difficile] Length = 245 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ +DD +R + ++GY V +G A + ++ E LL+ DI MP +G Sbjct: 3 KVLICDDDKIVRDDIANIAKESGYVDYVKKVKDGIEAIEFIKNEKIDLLIIDIDMPYKNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 I+ A +D D+ ++F+TGFA +L P + V KPF +++ +N Sbjct: 63 IDSAEEILSIDKDIHIVFVTGFADYSLESFKVHPIDFVV--KPFKKEKILDSIN 114 >gi|150375913|ref|YP_001312509.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030460|gb|ABR62576.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 121 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED++ R L + L + G+EV+ NG + + E L+L D+ +P MDG E Sbjct: 3 RILLVEDNEMNRDMLSRRLSRRGFEVLIAENGQAGVELAASEKPDLILMDMSLPVMDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 RR + DP + + A A+ D A SKP L LV ++ +LLT Sbjct: 63 ATRR-IKADPLTSAIPVIALTAHAMASDREMALKAGCDDYDSKPVDLPQLVRKIEQLLT 120 >gi|94263540|ref|ZP_01287351.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456073|gb|EAT06220.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 448 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 46/82 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD MR L + G+ V +G A ++E F L++TD+ MP DG+ + Sbjct: 13 LLVVDDDRRMRELLAEIFSTRGFGVTPAADGEEALALLKERKFDLVVTDLKMPGHDGLAI 72 Query: 65 ARRATELDPDLKVMFITGFAAV 86 R+A +P++ V+ ITG +V Sbjct: 73 LRQARSDNPEMPVIMITGHGSV 94 >gi|46578687|ref|YP_009495.1| response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448099|gb|AAS94754.1| response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311232558|gb|ADP85412.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 496 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 51/101 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++ +R L L G++V + NG A + + P ++LTD+ MP MDG+ Sbjct: 5 RLLLVDDEEGIRTVLSLVLADMGHDVRTAANGNEALALLHDRPADVVLTDVRMPGMDGLA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 L E PD V+ +TG + L S L+KP Sbjct: 65 LLAAVREAWPDTGVIMLTGHGDMELAVKSLRLGATDFLTKP 105 >gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1431 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD D R F+ L +AG V++ + A + P +LL+DI MP+MDG Sbjct: 1309 QVLVVDDDTDTREFVAFLLEQAGARVITAVSALEALQVFTQSPPDILLSDIGMPDMDGYM 1368 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L R+ L PD + I A A + + + KV +SKP +L+ + L+ Sbjct: 1369 LMRQIRALPPD-QGGKIPAIALTAYAGEIDEKRALKVGFQRHISKPVDPDNLIRAIVNLI 1427 Query: 119 TIK 121 IK Sbjct: 1428 DIK 1430 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ DMR ++ + L + Y V + +G +A + + + L+LTD++MP +DG Sbjct: 608 RILLVDDNADMREYVKRLLSRH-YVVETATDGLAALEALADHLPDLVLTDVMMPRLDGFG 666 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L A R+ ++ ++ ++ A + L KPF R+L+ V L + Sbjct: 667 LLSALRSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFSARELLARVEATLKL 725 >gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 233 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ ED+D +R F++ L +AGY+VV N G A E F ++L DI+MP +D Sbjct: 2 KRILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGID 61 Query: 61 GIELARRATELDPDLKVMFITG 82 G + ++ E + ++ +T Sbjct: 62 GFTVCKKIREKSSTIGIIMLTA 83 >gi|254785240|ref|YP_003072668.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237685880|gb|ACR13144.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 406 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R ++ L AG++V +GAS + + P L++TD+ MP++ G+ Sbjct: 7 QLLVIDDDAMIRSSVVTYLEGAGFKVHHSRDGASGCEWLATHPVDLVITDLCMPDVGGLS 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLL 118 + R P+L V+ ++G V ++ A L KP L LV+ V R+L Sbjct: 67 ILRSVKHCHPNLPVIVLSGVGVVRDVVEALRQGAADYLVKPLVDLEVLVHSVKRVL 122 >gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] Length = 240 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED++ + RFL L GY +NG S + + L+L D+++PE++ Sbjct: 1 MAATILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVMLPELN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RR +L V+ +T AV ++KPF + +L+ + R L Sbjct: 61 GLEVLRRLRRT-SNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRAL 117 >gi|82592707|gb|ABB84523.1| DigR [Myxococcus xanthus] Length = 197 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 57/122 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ D +L L + GYEVV+ + + +R F L++ D++MP+M Sbjct: 1 MQIRILVVDDEQDNCDYLKLVLTREGYEVVTTTDPTQTVEILRGSDFHLVILDMMMPQMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + + D D+ V+ T + V S + + + KP + V L Sbjct: 61 GTEVLEQIRKYDTDVAVIVATAYPTVDTAVASLKAQASDYVKKPMEPEQFITAVRNALQK 120 Query: 121 KN 122 K Sbjct: 121 KG 122 >gi|42524790|ref|NP_970170.1| response regulator of hydrogenase 3 activity (sensor HydH) [Bdellovibrio bacteriovorus HD100] gi|39577000|emb|CAE78229.1| response regulator of hydrogenase 3 activity (sensor HydH) [Bdellovibrio bacteriovorus HD100] Length = 467 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMD 60 +Q++L+ +D+ +R L + L + G V++ N A + + P L + D+ +P+ D Sbjct: 3 SQRVLILDDESSLRTALFRVLDRKGLNVITANKIEEAKVLCQGDSPVDLAIVDLNLPDGD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE L P +V+ +TG A + + ++KPF+L +L++ + + LT Sbjct: 63 GIEFMTYLKALTPATEVIILTGHATIESAIRATQKGAFHFVTKPFNLEELMSLIEKALTH 122 Query: 121 K 121 K Sbjct: 123 K 123 >gi|325277133|ref|ZP_08142779.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097710|gb|EGB95910.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 225 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 54/119 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A E + LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKTGAYLQQGLSEAGFNVDRVMTGTDALQHALSESYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R D+ V+F+T V L KPF +L+ V LL N Sbjct: 62 VLRMVRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120 >gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 1129 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 + +L+A+DD R + + L G+ V++ ++G A D VR+ EP +LLL DI MP ++G Sbjct: 923 RTVLVADDDAAHRDLMHELLVPLGFTVLAASDGVQALDMVRQWEPDALLL-DISMPGLNG 981 Query: 62 IELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R+ E L+++ I+ A L ++ L KP HLR L+ ++ LL I Sbjct: 982 WEVVRQLRDEGYARLRILMISANAGEILG--DGLAQHDDHLVKPVHLRTLLEKMAALLDI 1039 Query: 121 K 121 + Sbjct: 1040 E 1040 >gi|253567761|ref|ZP_04845172.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841834|gb|EES69914.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1420 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ DMR + I+++ + Y V+ NG A + P +++D++MP MDGIEL Sbjct: 1169 MLVVEDNADMRGY-IRSILREQYHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIEL 1227 Query: 65 ARRATE 70 +RR E Sbjct: 1228 SRRVKE 1233 >gi|239831448|ref|ZP_04679777.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823715|gb|EEQ95283.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L +A+ AGY V +G + EP+ ++ DI +P MDGI Sbjct: 8 RILIVEDDKDLNRQLAEAMAAAGYVVDRAYDGEEGHHLGDTEPYDAVVLDIGLPRMDGIS 67 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 68 VVERWRRSGRAMPVLMLTARDRWSDKVAGIDAGAD---DYVAKPFHIEEVLARLRALI 122 >gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 229 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+D+ D+R L L AGY VV +G A D + +P + L DI+MPEMD Sbjct: 1 MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 G ++ +R E D+ V+ ++ A +P+ N + KPF+ + V VN Sbjct: 61 GYQVLKRLRETS-DVPVIVVS---AKGQDPEKILGLNLGADDYMVKPFNPLEAVARVN 114 >gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD D+ A+ KAGYE + ++G +A R++ L++ DI +PEMD Sbjct: 1 MPARILIVDDDPDILDVTGFAVEKAGYETLFASDGLNALKASRQQLPDLIVLDIGLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ R + D+ ++F+T + + D L+KPF R+LV Sbjct: 61 GLEVCREIRK-SSDVPILFLTARDDEIDRIVGLEIGADD-------YLTKPFSPRELVAR 112 Query: 114 VNRLL 118 + +L Sbjct: 113 IKAIL 117 >gi|94968416|ref|YP_590464.1| two component, sigma54 specific, Fis family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550466|gb|ABF40390.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Koribacter versatilis Ellin345] Length = 463 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 47/77 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L AL K G++V + +G +A K+ F +++TDI MP+ +GIE+ Sbjct: 4 ILVCDDERSICEMLEIALRKEGHKVETVTSGEAAKRKLDSALFDVVVTDIRMPQTNGIEV 63 Query: 65 ARRATELDPDLKVMFIT 81 R A ++ PD V+ IT Sbjct: 64 LRHAHQISPDTAVVLIT 80 >gi|332716086|ref|YP_004443552.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Agrobacterium sp. H13-3] gi|325062771|gb|ADY66461.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Agrobacterium sp. H13-3] Length = 454 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD +R+ +++ L G V S + A + E+ +++TD+ MP M G+E Sbjct: 7 IFLVDDDSQLRKAMVQTLELDGLPVTSFSRAEQALAALNEDFDGVVITDVRMPGMTGLEF 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +D DL V+ ITG V + D+ ++KPF +V R L Sbjct: 67 FDHVRRIDADLPVILITGHGDVPMAVDALHNGAYDFIAKPFPAERMVESARRAL 120 >gi|317481352|ref|ZP_07940420.1| sigma-54 interaction domain-containing protein [Bacteroides sp. 4_1_36] gi|316902448|gb|EFV24334.1| sigma-54 interaction domain-containing protein [Bacteroides sp. 4_1_36] Length = 475 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G++V S +N A A + E L+L+D+ +P+ DGI+L Sbjct: 4 ILIVEDDITYGMMLKTWLGKKGFQVTSASNIARAQKHIESETVDLILSDLRLPDKDGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + ++ +TG+A + + ++KP + +L+ ++ L Sbjct: 64 LKWLGEHGLQIPLIIMTGYADIQSAVQTMKLGACDYIAKPVNPDELLKKIGEAL 117 >gi|288818280|ref|YP_003432628.1| transcriptional regulator, NtrC family [Hydrogenobacter thermophilus TK-6] gi|288787680|dbj|BAI69427.1| transcriptional regulator, NtrC family [Hydrogenobacter thermophilus TK-6] gi|308751877|gb|ADO45360.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Hydrogenobacter thermophilus TK-6] Length = 441 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 1/112 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD ++ LIKAL K+ Y A + E + ++L D+ +P+ +G+++ Sbjct: 4 LLIVEDDASLKDALIKALSKSNYICRGVGTFKEALTVLTNESYDIVLLDLKLPDAEGVQV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +R E+ D K++ ITG+ + +S + KPF+L L ++ R Sbjct: 64 VKRVKEVS-DAKIIVITGYGDIKTAVESIKAGAYDFIQKPFNLDILEADIKR 114 >gi|254558881|ref|YP_003065976.1| histidine kinase and two component hybrid sensor and regulator; membrane protein [Methylobacterium extorquens DM4] gi|254266159|emb|CAX21914.1| Putative histidine kinase and two component hybrid sensor and regulator; putative membrane protein [Methylobacterium extorquens DM4] Length = 693 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEM 59 NQ +L+ ED+ ++ RF + L GY V +A ++ PF + +D+VMP M Sbjct: 565 NQCVLVVEDNTEIGRFCTQILHDLGYGTVLTQTAEAALAEIEAVPFRFDAVFSDVVMPGM 624 Query: 60 DGIELARRATELDPDLKVMFITGFAAV 86 GIE+A+R ++ P++ ++ +G++ V Sbjct: 625 GGIEMAKRLRDIHPEMPIILTSGYSHV 651 >gi|253568339|ref|ZP_04845750.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251842412|gb|EES70492.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 908 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 8/111 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+D + L Y + NG A +KVREE F L+L D+ MP M G+E Sbjct: 796 KILIAEDNDSNYTLVQHILNN--YNLTHVQNGVEAVNKVREEEFDLILMDMKMPVMGGLE 853 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLV 111 R+ E + + ++ +T A A + D + +A + L+KP L+ Sbjct: 854 ATRKIREFNQKIPIIALT---ANAFDSDRVSALDAGCNEFLAKPIKKSQLL 901 >gi|119897667|ref|YP_932880.1| transcriptional regulator [Azoarcus sp. BH72] gi|119670080|emb|CAL93993.1| probable transcriptional regulatory protein [Azoarcus sp. BH72] Length = 212 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I + +DDD +R L+ L +GY+VV+ ++ + E L+ D+ MP M G Sbjct: 9 DQEIFIVDDDDALRDSLVWMLESSGYKVVAFDSAEAFLHAWHEGLAGCLVLDVRMPGMSG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL L V+FITG V + + A + KPF R+++ + L Sbjct: 69 LELFEELGRRRCTLPVIFITGHGDVPMAVAALKKGAADFIEKPFADREMLALIEHCL 125 >gi|115491255|ref|XP_001210255.1| hypothetical protein ATEG_00169 [Aspergillus terreus NIH2624] gi|114197115|gb|EAU38815.1| hypothetical protein ATEG_00169 [Aspergillus terreus NIH2624] Length = 641 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++K+LL ED+ ++ + + L G+ V +NG A D+ R++ F +L D VMP MDG Sbjct: 506 SKKVLLVEDNIINQQIVARKLRALGFNVTPASNGREALDEFRKKQFDCILMDQVMPVMDG 565 Query: 62 IELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 R +++ D K + + G A + +A V+ KP+ +RDL +++ L Sbjct: 566 NAATRAIRDMEKDTSKHVPVLGVTANVRSEQRTEMLDAGMDDVVQKPYRMRDLSEKISHL 625 Query: 118 L 118 + Sbjct: 626 I 626 >gi|148657135|ref|YP_001277340.1| nitrogen specific signal transduction histidine kinase NtrB [Roseiflexus sp. RS-1] gi|148569245|gb|ABQ91390.1| signal transduction histidine kinase, nitrogen specific, NtrB [Roseiflexus sp. RS-1] Length = 819 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ + L + L G+ + +G +A + + F L+LTDI MP M G EL Sbjct: 693 ILVVDDEEAVSALLARLLTDLGHRPTTVASGEAALAAIARQSFDLILTDIKMPGMTGFEL 752 Query: 65 ARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + E +P L +++FITG A A + ++KPF + L Sbjct: 753 YQHIKEHNPHLAQRIIFITGDTISASTQARLAQTGSPYIAKPFSIERL 800 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Query: 3 QKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D + L L + GY + G +++R+ L+L D+ +P++ G Sbjct: 2 EEILIIDDSKQICSLLADHVLPELGYTPTIAHTGRQGLNRLRQRTPDLILLDLQLPDISG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 ++L R + D+ V+ +T + A+ ++ L KPF Sbjct: 62 LDLLRLIAQEGYDVPVILMTAHGSEAIAVEAFRLGARNYLIKPF 105 >gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 233 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPEMD 60 +ILL +D+ ++ L + L + GY V G A++ K P++LL+ D ++PE+ Sbjct: 3 RILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPELS 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L +R ++D ++F+T + + L KPF LR+L+ V LL Sbjct: 63 GLSLCQRVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALL 120 >gi|78060336|ref|YP_366911.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia sp. 383] gi|77964886|gb|ABB06267.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia sp. 383] Length = 473 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ + L + AGYE+++ +G +A + + L+++D+ MP M G E Sbjct: 32 ILLVDDEPSVLSALRRVFRPAGYEILTAESGEAALEVLASTEVDLIVSDMRMPGMSGAEF 91 Query: 65 ARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG+A +A + N + L+KP+ DL+ + + L Sbjct: 92 LARARSLYPDTMRILLTGYAEIASVVQAVNDGGVYRYLNKPWDDHDLLLTIEQAL 146 >gi|56459425|ref|YP_154706.1| response regulator [Idiomarina loihiensis L2TR] gi|56178435|gb|AAV81157.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina loihiensis L2TR] Length = 198 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAED +R L L ++ Y V +G A K++E + +LL+DI MP + G+ Sbjct: 2 KILLAEDQTMVRTALASLLRLESDYHVDEAVDGVDAQKKLQESDYDVLLSDIEMPNLSGL 61 Query: 63 ELARRATELDPDLKVMFITGF 83 EL + A + P+L+ + IT F Sbjct: 62 ELVQWAQQQQPNLRSVIITTF 82 >gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC BAA-286] Length = 221 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 55/112 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ ED+ + FL + L + GY + +G + R E L+L D V+P+MDGI Sbjct: 2 QHILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVLPKMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ + + D ++ ++F+T V + + KPF +L+ + Sbjct: 62 DVCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERI 113 >gi|319640297|ref|ZP_07995022.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_40A] gi|317388072|gb|EFV68926.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_40A] Length = 1388 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR ++ L K Y++ NGA A ++ E L+++D++MP MDG Sbjct: 1138 ETILIVEDNADMRTYICSIL-KNNYQLKEAQNGAEALYLIQRETIDLIVSDLMMPVMDGN 1196 Query: 63 ELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL+RR A + + +T + A S + L KPF +EV L I Sbjct: 1197 ELSRRVKANLATSHIPFLMLTALRSEAQERISYEIGVDEYLCKPF------DEVILRLRI 1250 Query: 121 KN 122 +N Sbjct: 1251 RN 1252 >gi|309778021|ref|ZP_07672962.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium 3_1_53] gi|308914211|gb|EFP60010.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium 3_1_53] Length = 227 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 11/115 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L EDD + L+ L K GYEVV C+ +A ++ E F LLL D+ +P+ G ++ Sbjct: 3 VLFVEDDQAIAMGLVYTLKKEGYEVVWCDCKQAALQQLHRETFDLLLLDVGLPDGSGYDI 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 A D+ V+F+T AL+ + N + ++KPF + +L++ + Sbjct: 63 CTYAKS-RQDVPVLFLT-----ALDDEGNVVMGLDMGGDDYITKPFRINELLSRI 111 >gi|298488634|ref|ZP_07006664.1| C4-dicarboxylate transport transcriptional regulatory protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156975|gb|EFH98065.1| C4-dicarboxylate transport transcriptional regulatory protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 444 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV ++ E ++LTD+ MP M Sbjct: 1 MLNSVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAQLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|293401455|ref|ZP_06645598.1| chemotaxis protein CheY [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305093|gb|EFE46339.1| chemotaxis protein CheY [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 125 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M ++IL+ +D MR L L K Y++V +G A + E+ F L+L DI MP Sbjct: 1 MTKRILIVDDAIFMRTMLKNILTKDTAYTYDIVEAKDGVEAITFIDEQEFDLVLMDITMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M GIE + E L V+ + A A+ ++ + KPF+ D++ V+++ Sbjct: 61 NMGGIEALKIIKEKKAKLPVVMCSAMAQEAMVVEAIRIGATSFIVKPFNANDVIEVVHKI 120 Query: 118 L 118 + Sbjct: 121 V 121 >gi|290475966|ref|YP_003468861.1| response regulator in two-component regulatory system with QseC, regulates flagella and motility by quorum sensing (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289175294|emb|CBJ82097.1| response regulator in two-component regulatory system with QseC, regulates flagella and motility by quorum sensing (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 221 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED D+ +L KAL +G+ V +G +A + E ++LL+ D+ +P +DGI Sbjct: 2 RLLLVEDHPDLSHWLQKALSSSGFAVDIAEDGIAADQLLLTEDYTLLILDVALPRLDGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + +L V+ +T VA ++KPF +L + LL Sbjct: 62 LLSRLRKRGQNLPVLLLTAKVDVADRVKGLNSGADDYVTKPFDFEELEARIRALL 116 >gi|295690540|ref|YP_003594233.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432443|gb|ADG11615.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 695 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDG 61 +IL ED+D +R + L GYEV+ +G A E + LL++D++MP +DG Sbjct: 576 RILFVEDEDAVRSVAARLLRARGYEVLEAADGEEALLIAEEHAGTIDLLISDVIMPGIDG 635 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++A VMFI+G+A + L KP ++ L V + L Sbjct: 636 PTLLKKARGYLGTAPVMFISGYAEAEFSDLLEGETGVTFLPKPIDIKTLAERVKQQL 692 >gi|265755299|ref|ZP_06090069.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263234441|gb|EEZ20031.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1344 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQVRIPNIIVSDIMMPVMDGIEL 1152 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 >gi|304316895|ref|YP_003852040.1| response regulator receiver protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778397|gb|ADL68956.1| response regulator receiver protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 119 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI++ +D MR + + K V+ +G+ A +K +E L+L DI MPEMDGI Sbjct: 3 KIMIVDDAAFMRMMIKDIITKNNLGSVIEAEDGSVAVEKYNQEKPDLVLMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ + DP+ K++ + A+ ++ + KPF ++ V ++L Sbjct: 63 QAVRQIVKKDPNAKIVMCSAMGQQAMVIEAIQAGAKDFIVKPFQPDRVIEAVKKML 118 >gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii ATCC 27126] Length = 224 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L L + GY V +NG A ++E + L + DI MP++DG E Sbjct: 2 RILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIGMPKLDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+A + D ++ +T + L+KPFH +L+ L+ Sbjct: 62 VIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALI 116 >gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GY+V +G A ++ L++ D+ +PEMDG+E+ Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR V+ +T V L+ ++ ++KPF L +L+ V LL Sbjct: 64 ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|256822513|ref|YP_003146476.1| two component heavy metal response transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] gi|256796052|gb|ACV26708.1| two component heavy metal response transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 230 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ +L + LG+AG+ VV NG + E F L++ D+++P++DG + Sbjct: 2 KLLLVEDEPKTGDYLRQGLGEAGFVVVLVRNGLDGHHLAMTESFDLIILDVMLPDVDGWQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++ V+F+T +V L KPF +L+ V LL Sbjct: 62 IVKALRQIGCRTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 241 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AGY+V+S +G A E L++ D+++P+MDG Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ D+ ++F+T + + ++KPF L ++V +N +L Sbjct: 71 VTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAIL 125 >gi|222147052|ref|YP_002548009.1| two component response regulator [Agrobacterium vitis S4] gi|221734042|gb|ACM35005.1| two component response regulator [Agrobacterium vitis S4] Length = 240 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+ Sbjct: 2 QTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGM 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR + D+ V+F+T + + D ++KPF R LV V Sbjct: 62 ELLRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVK 113 Query: 116 RLL 118 +L Sbjct: 114 AIL 116 >gi|148265414|ref|YP_001232120.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398914|gb|ABQ27547.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 455 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 7/125 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS--AY-DKVREEPFSLLLTDIVMPEMDG 61 IL+ +D++ + ++L K L G++V + + GA+ AY + + LL+ D+ MP+MDG Sbjct: 6 ILICDDEEGILKYLRKLLISQGFDVETFDRGAALLAYLENGKAAHADLLIQDVRMPDMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH----LRDLVNEVNRL 117 IE+ +R +L P L V+ +T F + D+ ++KPF L L N + R Sbjct: 66 IEVLQRVKKLRPALPVIIMTAFGTIDSAVDAIKLGAYDYVTKPFPKEKILGVLENALERE 125 Query: 118 LTIKN 122 L IK Sbjct: 126 LLIKE 130 >gi|118579802|ref|YP_901052.1| response regulator receiver modulated metal dependent phosphohydrolase [Pelobacter propionicus DSM 2379] gi|118502512|gb|ABK98994.1| response regulator receiver modulated metal dependent phosphohydrolase [Pelobacter propionicus DSM 2379] Length = 348 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ IL+ +D+ +R L AL G+ + N A+ + + L+++DI+MP Sbjct: 1 MNENILIVDDELLVRELLTTALTYEGFTCHTATNVDEAFGIMDVQQMDLVISDIMMPGRS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R ++D D+ V+ ITG + + ++KPF + ++ V L+ Sbjct: 61 GMELLRDLKQIDEDIAVLMITGLTDTQTALECISLGADDYIAKPFSITRVILTVRNLI 118 >gi|332307147|ref|YP_004434998.1| response regulator receiver modulated diguanylate phosphodiesterase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174476|gb|AEE23730.1| response regulator receiver modulated diguanylate phosphodiesterase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 569 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ L + L K +EV N+ ++E ++L+D MP M G E Sbjct: 14 KLLVVDDEPNILSSLKRCLVKTPFEVYVANSAQEGLAIMQEHNIQVVLSDFRMPHMSGAE 73 Query: 64 LARRATELDPDLKVMFITGFA----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + PD+ M ++GFA A+ L N+ K L KP++ +DL++E+ T Sbjct: 74 LIEQIKSTYPDVISMVLSGFADFDSAIGL---LNSGAAHKFLRKPWNNQDLIDEIGGAFT 130 >gi|307824959|ref|ZP_07655181.1| response regulator receiver protein [Methylobacter tundripaludum SV96] gi|307734006|gb|EFO04861.1| response regulator receiver protein [Methylobacter tundripaludum SV96] Length = 122 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL ED +R+ + L + GY+VV ++G A K+ L+++D+ MP MD Sbjct: 1 MAKTILFVEDSASVRQVMNSTLTREGYDVVLASDGQDALSKLDGTKIHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPDLK----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ ++A +L P K +M T +N A A ++ KPF L+ V++ Sbjct: 61 GLTFVKKAKQL-PAYKFTPIIMLTTETQEDKMNEGKAAGVKAWIV-KPFQPAQLLAAVSQ 118 Query: 117 LL 118 L+ Sbjct: 119 LI 120 >gi|301165844|emb|CBW25417.1| putative two-component system, response regulator [Bacteriovorax marinus SJ] Length = 117 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D+ + + G+++ ++G + F L+++D+ MP+ DG Sbjct: 2 SKILIVDDEIQICEMMADLFESRGHDITVAHSGNKGAEVFSSGEFDLVISDVKMPDGDGF 61 Query: 63 ELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLLT 119 ELAR E P K++F+TG+ V + P+N K V KP ++L+ V +L+ Sbjct: 62 ELARLIGESAPSFNKIIFVTGYLDV---ESAKLPENVKRVFKKPVRFKELLACVEEILS 117 >gi|223040935|ref|ZP_03611197.1| DNA-binding response regulator [Campylobacter rectus RM3267] gi|222877779|gb|EEF12898.1| DNA-binding response regulator [Campylobacter rectus RM3267] Length = 222 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD R+ + + L GY+V NG A DK+ + LL+ DI +P + G E Sbjct: 2 KILLLEDDFAYRQSVSEYLQSIGYDVDEAANGQIACDKIAANFYHLLILDIKVPHISGHE 61 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + A ++ + +M +T AV N + L KPF L +L VN L+ Sbjct: 62 VIKYAKDIGYEAPIMIMTSLVDIDDMAVGYELGCN-----EYLKKPFELAELKFRVNELM 116 >gi|210610528|ref|ZP_03288454.1| hypothetical protein CLONEX_00644 [Clostridium nexile DSM 1787] gi|210152387|gb|EEA83393.1| hypothetical protein CLONEX_00644 [Clostridium nexile DSM 1787] Length = 244 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A D +R+ F L+L DI +P+ +G Sbjct: 16 KQILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINLPDGNGF 75 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 76 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 130 Query: 118 LTI 120 + Sbjct: 131 FAM 133 >gi|223935927|ref|ZP_03627842.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223895528|gb|EEF61974.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 918 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 10/110 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPE 58 N+ ILL ED+ +R ++ L Y+V+ +G A KV ++ LLLTD+VMP+ Sbjct: 798 NETILLVEDEPVLREWVKDVLQTNSYQVLEAGSGREAL-KVWDDQGGKIDLLLTDMVMPD 856 Query: 59 -MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAP--KNAKVLSKPF 105 M G +LA++ +P LKV++ +G+++ + +N P + LSKPF Sbjct: 857 GMTGRDLAKQLRAREPKLKVIYTSGYSS---DIAANDPELRGVPFLSKPF 903 >gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51] gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R + L + GYEV NG A +K +++ ++LL+ D++MPE+DG ++ Sbjct: 4 ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63 Query: 65 ARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R E D+ ++ +T L D L KPF ++LV V L Sbjct: 64 CRDVRE-RSDIPIIMLTARGEEFDRVLGFELGADD-------YLVKPFSTKELVARVKAL 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp. HGF5] gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp. HGF5] Length = 239 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 17/128 (13%) Query: 1 MNQKILLAEDDDDMR-RFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MNQ L+A DDD+ R L++A L K GY V +D R P + + DI++P Sbjct: 1 MNQTYLIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK-------NAKVLSKPFHLRDLV 111 MDG EL RR + ++ ++ I+ DS K + + KPF R+LV Sbjct: 61 MDGFELCRR-IRAEAEVPIIMISA-------KDSEVDKILGLELGSDDYMVKPFSPRELV 112 Query: 112 NEVNRLLT 119 + R L+ Sbjct: 113 ARIKRQLS 120 >gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL S4-171] Length = 240 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + KAG+EVV+ +G++ Y+ E L++ D+++PEMDGIE Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + D+ ++ +T + L D ++KPF R++V + Sbjct: 67 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADD-------YMTKPFSPREVVARIKA 119 Query: 117 LL 118 +L Sbjct: 120 IL 121 >gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 252 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++R L +L AG++VVS NGA A + LL+ D+++P+MDG + Sbjct: 14 LLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGFTV 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + + V+F+T + ++KPF L ++V + +L Sbjct: 74 TRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVL 127 >gi|295700653|ref|YP_003608546.1| histidine kinase [Burkholderia sp. CCGE1002] gi|295439866|gb|ADG19035.1| histidine kinase [Burkholderia sp. CCGE1002] Length = 764 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 15/116 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---DKVREE--------PFSLLLT 52 ++LL ED++++ L G++V N +A D R + PF L+L+ Sbjct: 624 RVLLVEDNEEVAAGTEALLQMMGHQVTCVFNADTALRVLDDARAKRADTGEPLPFDLVLS 683 Query: 53 DIVMP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 DI MP +M+GI+LA DP L V+ +TG+A D N VLSKPF + Sbjct: 684 DIHMPGKMNGIDLAEAVLGFDPQLPVILVTGYAE---ELDRAQQVNVHVLSKPFDI 736 >gi|270294666|ref|ZP_06200868.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276133|gb|EFA21993.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 476 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G++V S +N A A + E L+L+D+ +P+ DGI+L Sbjct: 4 ILIVEDDITYGMMLKTWLGKKGFQVTSASNIARAQKHIESETVDLILSDLRLPDKDGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + ++ +TG+A + + ++KP + +L+ ++ L Sbjct: 64 LKWLGEHGLQIPLIIMTGYADIQSAVQTMKLGACDYIAKPVNPDELLKKIGEAL 117 >gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC 49176] gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC 49176] Length = 225 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L AED+ D+ R + K L + G+ V SC +G A D ++ + + + DI++P DG Sbjct: 2 RLLYAEDEPDLNRIVTKKLAEEGFSVDSCFDGREAIDNIQFTDYDVAILDIMLPHADGFA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + +L + V+F+T ++ L KPF +L+ + R++T Sbjct: 62 ILKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARI-RVMT 116 >gi|256830433|ref|YP_003159161.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256579609|gb|ACU90745.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 675 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ +D+ R L L + GY V NG A + + F ++TD+ M MDG Sbjct: 114 QASLLIVDDEPIARSNLRHVLAREGYAVEVAANGEEAMAFLARQEFDCIVTDLKMDRMDG 173 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L A + PD K + +TG+A V + LSKP L +L V L Sbjct: 174 MQLLEAARAVAPDTKFILVTGYATVDTAVQALKTGAVHYLSKPIDLNELREAVRTAL 230 >gi|218887197|ref|YP_002436518.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758151|gb|ACL09050.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 768 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ R + L + GY V + NG A ++ + +TD+ M MDG++L Sbjct: 140 VLVVDDEPIARDNVAHVLAREGYTVDTAANGEEALARLARRRYDCTVTDLKMDRMDGMQL 199 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A + PD +++ +TG+A V + + LSKP + +L V L Sbjct: 200 MEAARRVAPDTRIVVVTGYATVDTAVQALKTGAVQYLSKPIDIAELRATVREAL 253 >gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 239 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 17/128 (13%) Query: 1 MNQKILLAEDDDDMR-RFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MNQ L+A DDD+ R L++A L K GY V +D R P + + DI++P Sbjct: 1 MNQTYLIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK-------NAKVLSKPFHLRDLV 111 MDG EL RR + ++ ++ I+ DS K + + KPF R+LV Sbjct: 61 MDGFELCRR-IRAEAEVPIIMISA-------KDSEVDKILGLELGSDDYMVKPFSPRELV 112 Query: 112 NEVNRLLT 119 + R L+ Sbjct: 113 ARIKRQLS 120 >gi|188582577|ref|YP_001926022.1| histidine kinase [Methylobacterium populi BJ001] gi|179346075|gb|ACB81487.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 531 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ +D D+ L GY + +G A + + + LL +D++MP M Sbjct: 407 SETILIVDDRADVAELARAILRDYGYGTLMARHGREALEILADHSEIDLLFSDLIMPGGM 466 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ LAR A P LK++ TG+A +L A +L+KP+ +L+ V L Sbjct: 467 DGLSLAREAHRRHPALKILLTTGYAEASLERTGLARPEFDILNKPYRRAELIRRVRAAL 525 >gi|146306958|ref|YP_001187423.1| response regulator receiver protein [Pseudomonas mendocina ymp] gi|145575159|gb|ABP84691.1| response regulator receiver protein [Pseudomonas mendocina ymp] Length = 394 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 48/78 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G++V+ NNG + ++E L++ D+ MP++DG+EL Sbjct: 8 LLIIDDDDVVRASLAAYLEDSGFKVLQANNGLQGLEVFQQESPDLMICDLRMPQVDGLEL 67 Query: 65 ARRATELDPDLKVMFITG 82 RR L ++ V+ ++G Sbjct: 68 IRRINALGVEVPVIVVSG 85 >gi|117923628|ref|YP_864245.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117607384|gb|ABK42839.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 221 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 56/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED + L K LG AG+ V N REEP+ ++ D+ +P+ G+ Sbjct: 2 RILVVEDHASLAAGLKKDLGAAGFVVDWAANAEEGAFMGREEPYDAVILDLGLPDDSGLN 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R D+ V+ +T + A D L KPFH+ +L+ +N L+ ++ Sbjct: 62 VLRGWRAAGVDVPVIILTAWDAWHQRVDGLQAGGDDYLGKPFHMEELIARLNALIRRRH 120 >gi|147676940|ref|YP_001211155.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146273037|dbj|BAF58786.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 515 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D+ + F + LG+ +VV +G A +RE F L L D+ +P+ G Sbjct: 4 NHQVLVVDDEPQVGAFFQRLLGRKKLQVVLAYSGEEARHVLREHEFKLALLDLKLPDACG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL R L P +V+ +TG+ + L KPF + ++E+ +L+ Sbjct: 64 LELLREVKNLQPHCEVIIMTGYGTTRTAVKAIQLGAYDFLEKPF---ENIDELEKLI 117 >gi|94988366|ref|YP_596467.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94992248|ref|YP_600347.1| two-component response regulator [Streptococcus pyogenes MGAS2096] gi|94541874|gb|ABF31923.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94545756|gb|ABF35803.1| Two-component response regulator [Streptococcus pyogenes MGAS2096] Length = 222 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ M L A+ GY+V NG A DK ++ + +++ DI+MP GIE Sbjct: 2 KILLAEDEWQMSNVLTTAMTHQGYDVDVVFNGQEAIDKAKDNAYDIMILDIMMPIKSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLV 111 + ++ +T A + D+ A L+KPF L++L+ Sbjct: 62 ALKEIRASGNCSHIIMLTAMAEINDRVTGLDAGAD---DYLTKPFSLKELL 109 >gi|27375496|ref|NP_767025.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27348633|dbj|BAC45650.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 1198 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 ++ IL+ EDD +R +++ L GY + N A A V +PF LL TD++MP M Sbjct: 1078 HETILVVEDDRLVRDYVLAQLHALGYVTLQAANAAEALAIVAAGKPFDLLFTDVIMPGRM 1137 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA + PDL+V++ +G+ A+ +L+KP+ DL + + L Sbjct: 1138 NGRQLADELMKTRPDLRVVYTSGYTENAIIHHGRLDSGVLLLAKPYRKSDLARIIRKAL 1196 >gi|320353046|ref|YP_004194385.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121548|gb|ADW17094.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 450 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 6 LLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD+ + RF++ +L + G++ ++G++A V PF +L D+ M MDG+E Sbjct: 9 ILVVDDERVHRFMLHSLFAEWGWDAEEADDGSTAVAAVERGPFDAILMDVRMTTMDGMEA 68 Query: 65 ARRATELDPDLKVMFITGFAAV 86 +R L+P + V+ +T F++V Sbjct: 69 LKRIHALNPAIPVIIMTAFSSV 90 >gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 227 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ +R + + L + GY V +NG + R P L+L D++MP MDG+ Sbjct: 2 KTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAA-------VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E R+ D VMF+T A + L D L+KPF + +L+ + Sbjct: 62 EFLRK-YRADAGTPVMFLTARDAELDKVLGLELGADD-------YLTKPFSMAELLARIR 113 Query: 116 RLL 118 LL Sbjct: 114 ALL 116 >gi|313149292|ref|ZP_07811485.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313138059|gb|EFR55419.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 1307 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 46/65 (70%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ ++R +LI++L + +V + +N SA + RE+ S++++D++MP+M+G Sbjct: 1054 KTILIVEDEKELREYLIESLTEFFKKVYAADNAISALEICREKQPSVIVSDVMMPQMNGF 1113 Query: 63 ELARR 67 EL R+ Sbjct: 1114 ELCRQ 1118 >gi|312891952|ref|ZP_07751455.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295583|gb|EFQ72749.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1383 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+DD R +L LG++ + + +CN G + K +L+++DI MPE++GI+L Sbjct: 1134 VLLVEDNDDFRFYLKDNLGESFHIIEACN-GKEGWQKTLALHPNLVVSDISMPEINGIDL 1192 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R R + + V+ +T L+KPF+ L++++ +L I+ Sbjct: 1193 CRKIRNDKRTSHIPVVLLTALTGEQQQLQGLETGANDYLTKPFNFEILLSKLKNILAIQ 1251 >gi|300869040|ref|ZP_07113642.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300332951|emb|CBN58836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 441 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 9/126 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKA----GYEVVSCNNGASAYDK-VREEPFSLLLTDIV 55 M KIL+ +D+ + R + + K+ E + +NG A +K V E P +++LTDI Sbjct: 1 MTYKILVVDDEVSLERLIKQRFRKSIRDRELEFIFAHNGKEALEKLVEESPIAVILTDIN 60 Query: 56 MPEMDGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVN 112 MPEMDG+ L + +EL+ + LK + ++ + + N + + A L+KP DL Sbjct: 61 MPEMDGLTLLEKLSELEGNLTLKTVVVSAYGDLQ-NIRTAMNRGAFDFLTKPIDFDDLEI 119 Query: 113 EVNRLL 118 +NR L Sbjct: 120 TINRTL 125 >gi|196228200|ref|ZP_03127067.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196227603|gb|EDY22106.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 190 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD + L L G+EVV+ NG A++ EP ++++D +MP MDG++ Sbjct: 2 KILIAEDDPVSVKILQFTLQHYGHEVVTAANGTEAWEAFDHEPVRVIVSDWMMPGMDGLQ 61 Query: 64 LARRATE 70 L ++ + Sbjct: 62 LCQKVRQ 68 >gi|192292002|ref|YP_001992607.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192285751|gb|ACF02132.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 686 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + L GY + ++ ++ + LL+TD+ +P M+ Sbjct: 567 ETVMVVDDEPTVRMLVADVLEDLGYTALEASDSVGGLKLLQSDARIDLLVTDVGLPGGMN 626 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A ++ P L V+FITGFA AL + VL+KPF + L + L+ Sbjct: 627 GRQLADAARQIRPGLNVLFITGFAENALLNNGQLEPGMAVLTKPFAVDTLAARIRELI 684 >gi|149279746|ref|ZP_01885874.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149229544|gb|EDM34935.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 1300 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED +D+ +++ + L + Y ++ N+G A + + + P L+++DI+MP M+G++L Sbjct: 1052 ILLVEDHNDILKYISQEL-RGEYFILKANDGMEALELLEKHPVQLVVSDIMMPRMNGLDL 1110 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR T+L + V+ +T +V + + KPF + L ++ LL Sbjct: 1111 CRRIKTDLTYSHIPVILLTAKTSVDSRIEGLGTGADAYIDKPFSMSHLEMQIKSLL 1166 >gi|78187120|ref|YP_375163.1| two component Fis family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167022|gb|ABB24120.1| two component transcriptional regulator, Fis family [Chlorobium luteolum DSM 273] Length = 486 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 44/85 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+A+D +R + L K GY ++ NG S + EEP +LL D+ MPE DG+ Sbjct: 8 KTVLVADDSSVIRTLMQHLLKKLGYRAITAENGTSCIRTLEEEPVDVLLLDLNMPEKDGM 67 Query: 63 ELARRATELDPDLKVMFITGFAAVA 87 E+ E L V+ IT V+ Sbjct: 68 EVLSWVREQGMTLPVIIITALEDVS 92 >gi|39996231|ref|NP_952182.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983111|gb|AAR34505.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505243|gb|ADI83966.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 453 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 56/107 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D++ R L L AG+ V S G+ A+ + + F +++TD+ +P+ GI+ Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLTRDTFDIVITDLFLPDASGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + ++ E P +V+ ITG A+ + ++KP + +L Sbjct: 66 ILKKVKEDAPLTEVILITGHASAETAVKAMKEGAFDYITKPLNFDEL 112 >gi|84622740|ref|YP_450112.1| hypothetical protein XOO_1083 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366680|dbj|BAE67838.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 232 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + + AL +A Y V ++G SA ++E+ L++ D+ +P MDGIE Sbjct: 2 RILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGIE 61 Query: 64 LAR--RATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R RA +D + V+ AA AL PD A L KPF +L+ LL Sbjct: 62 VIRTARARAVDTPILVLSARERAADRALGPDVGAD---DYLGKPFDTNELLARTRALL 116 >gi|39936279|ref|NP_948555.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39650134|emb|CAE28657.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 686 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +++ +D+ +R + L GY + ++ ++ + LL+TD+ +P M+ Sbjct: 567 ETVMVVDDEPTVRMLVADVLEDLGYTALEASDSVGGLKLLQSDARIDLLVTDVGLPGGMN 626 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A ++ P L V+FITGFA AL + VL+KPF + L + L+ Sbjct: 627 GRQLADAARQIRPGLNVLFITGFAENALLNNGQLEPGMAVLTKPFAVDTLAARIRELI 684 >gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] Length = 239 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ +D++ + L L ++GYEVV+ +GAS + + F L++ D+++PEMD Sbjct: 1 MTQRLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+++ ++ + ++ +T + L D ++KPF R++V Sbjct: 61 GLDVCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADD-------YMTKPFSPREVVAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VRAIL 118 >gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium resistens DSM 45100] Length = 231 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+DD +R L ++L GY VV ++GA A + + E L + D++MP DG+E Sbjct: 2 KILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVMMPRRDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R D+ ++ +T AV+ L KPF L +L+ L Sbjct: 62 VCRELRSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLF 116 >gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ ED+ +R L +L AG+ V GA A VRE+ L++ D+++P+ DG Sbjct: 4 SERLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDG 63 Query: 62 IELARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ RR P V+F+T A ++KPF+L +LV + Sbjct: 64 FEVVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRA 123 Query: 117 LL 118 +L Sbjct: 124 IL 125 >gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 719 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD D+ L L GY + +G +A + ++P+ ++ D+++P +DG+ Sbjct: 2 KQILLVEDDHDIAALLRLNLEDEGYIITHEPDGGNALQCLEKQPWDAVILDLMLPNVDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L V+ I+ ++ L+KPF +++L+ + L Sbjct: 62 EICRRIRQITRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 117 >gi|224540392|ref|ZP_03680931.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM 14838] gi|224517994|gb|EEF87099.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM 14838] Length = 1421 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ + Y V+ NGA A + + + +++D++MP MDGIEL Sbjct: 1168 ILVVEDNADMRGY-IRSILRDYYNVLEACNGAEAIEILNRQSIDFIVSDLMMPVMDGIEL 1226 Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +RR E + + + +T + +S + L KPF L+ + +L Sbjct: 1227 SRRVKETFANSHIPFLMLTAKTSPEARLESYRTGVDEYLLKPFDETLLLTRIENIL 1282 >gi|224373041|ref|YP_002607413.1| two component transcriptional regulator, winged helix family [Nautilia profundicola AmH] gi|223588339|gb|ACM92075.1| two component transcriptional regulator, winged helix family [Nautilia profundicola AmH] Length = 216 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 4/116 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI+L ED+ + + + L K GY V S +G AY+ +++E F +L+ DI +P +DG Sbjct: 2 KIVLVEDEYSLNEIITEYLEKEGYFVKSFIDGKDAYEYLKKENFDILILDIHLPNIDGFS 61 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + A + +L P +FI+ ++ + KPF+L++L ++ RL Sbjct: 62 ILEALQKEKLSP--PTIFISAMNSIEHITKAYDLGCFDYFKKPFYLQELHIKIERL 115 >gi|210610773|ref|ZP_03288604.1| hypothetical protein CLONEX_00794 [Clostridium nexile DSM 1787] gi|210152286|gb|EEA83293.1| hypothetical protein CLONEX_00794 [Clostridium nexile DSM 1787] Length = 540 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 52/83 (62%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+ L ED+ +R + K++ + GYE V ++G AY + +E +L+TDI MP MD Sbjct: 6 KVFLVEDEVIIRSGVKKSINWEQEGYEFVGEASDGELAYPMILKEKPDILITDIRMPFMD 65 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL+R + PD+K++ ++G+ Sbjct: 66 GLELSRLVKKELPDIKILILSGY 88 >gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 642 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 7/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED++ R LI+ L K GY + +NGA ++VR + + ++ DI MP M+G+E Sbjct: 517 ILIAEDNEVNRLVLIRMLEKLGYRPKAVSNGAEVVEEVRRKKYDIVFMDIQMPVMNGMEA 576 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 ++ R T ++P + +I A AL D +A + +SKP H ++ + + L Sbjct: 577 SKILRKT-IEPG-NLPYIVAVTANALVGDRERYMSAGMNEYISKPLHSSAVLTVIQKCL 633 >gi|218532363|ref|YP_002423179.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524666|gb|ACK85251.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 587 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ ++ F +AL + GY V + A ++ P F ++ TD+VMP M+G+ Sbjct: 467 VLLVEDNREVGAFATQALAELGYGTVWAMDAEQALAELDRTPERFDVVFTDVVMPGMNGV 526 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ELAR P + ++ +G++ V L D + +L KP+ + DL Sbjct: 527 ELARTILGRTPGMPIVLSSGYSHV-LAEDGH--HGFPLLHKPYSVEDL 571 >gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 1319 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ R +++ L +G + + NG A ++V + PF L+L DI MP MDG Sbjct: 964 RVLLVEDNAINREVVLELLNNSGLIIETAVNGQEALERVSQHPFDLILMDIQMPLMDGYT 1023 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKP 104 A RA P + I A A D A K A + ++KP Sbjct: 1024 -ATRAIRTLPGWEQTPILALTASAFEEDRKACKAAGMNDFIAKP 1066 >gi|110833126|ref|YP_691985.1| PilH family regulatory protein [Alcanivorax borkumensis SK2] gi|110646237|emb|CAL15713.1| regulatory protein pilH family [Alcanivorax borkumensis SK2] Length = 120 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D R L+K + G++VV+ +NG +K ++E L+L D+VMPE++G + Sbjct: 3 KILVVDDSPTQRSNLVKIVQGQGHDVVTASNGMEGIEKAKQEHPDLILMDVVMPELNGFQ 62 Query: 64 LARRATELDP 73 R+ T DP Sbjct: 63 ATRKITR-DP 71 >gi|89098460|ref|ZP_01171343.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89086705|gb|EAR65823.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 119 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MR L L KA +E+V NG A D RE L+ DI MPEM G+ Sbjct: 3 RILIVDDAKFMRLTLTGILKKAEHEIVGEAENGREAIDLYRELKPELVTMDITMPEMSGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E + + PD KV+ + + ++ + KPF +++ VNR+L+ Sbjct: 63 EAMKEIKQEFPDAKVVMCSAMGQQKMVVEAIEAGAKDFIVKPFDEGRVLDAVNRVLS 119 >gi|148547564|ref|YP_001267666.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida F1] gi|148511622|gb|ABQ78482.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida F1] Length = 475 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 54/110 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD+ + + L GYEV+ C++ A ++++ +LTD +P M Sbjct: 1 MEHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G +L R PDLKV+ +TG+ V + L+KP L +L Sbjct: 61 GHDLLRTLVARAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAEL 110 >gi|46203934|ref|ZP_00050744.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 120 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 12/118 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDGI 62 +L+ ED++ + + AG+ V+ AY +++ F LL TDI +P ++DG Sbjct: 7 VLVVEDEEMLLNAVAMEFEDAGFTVLCAGTAEEAYGLLKDGRTFDLLFTDIRLPGQLDGW 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNRL 117 +LA RA EL P L V+++TG++ + P+ + ++ KP+ + ++N +L Sbjct: 67 DLAERARELHPALPVIYVTGYS-------TEQPRQVSESTLVMKPYRMTAVMNAARQL 117 >gi|332366685|gb|EGJ44427.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 244 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED+ +R+ + + + G +V++ NG A+ K +E P +LLTDI MP+M+G Sbjct: 4 IMIVEDEYLVRQGIASLVNYEQFGMQVIAQAENGIEAWQKFQENPADILLTDINMPQMNG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 +ELA+ + P ++F+TG+ Sbjct: 64 LELAKLVRDQAPKCHIVFLTGY 85 >gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + R L L K GYE +G +A E + +L DI++P++D Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ + A+ L D ++KPF R+LV Sbjct: 61 GIEVCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADD-------YMTKPFSPRELVAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 LKAIL 118 >gi|325919169|ref|ZP_08181224.1| fused histidine kinase/response regulator receiver domain [Xanthomonas gardneri ATCC 19865] gi|325550339|gb|EGD21138.1| fused histidine kinase/response regulator receiver domain [Xanthomonas gardneri ATCC 19865] Length = 216 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ ED D+ L AGY V+ ++G A + P L TD++MP M Sbjct: 91 SENILIVEDKPDVAVVAKLFLEGAGYRVLCASSGREAIAVLELHPEVDALFTDLIMPGGM 150 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A + P +K++ TG+A + V++KP+ ++L+ + LL Sbjct: 151 NGVVLAREACRMLPKIKILLTTGYADAGIQRTDVDGAEFGVVNKPYTQKELLKRIRLLL 209 >gi|302188164|ref|ZP_07264837.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 691 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S + ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDEPSVRMLVAEVISGLGYNCLEAADAQSGLEILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDTLAGRVTGLI 681 >gi|297568970|ref|YP_003690314.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924885|gb|ADH85695.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 848 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + +LL ED+ + L K GY V + A E LL+TD++MPEM+ Sbjct: 719 ETVLLVEDEVALLNMAKMLLEKLGYRVFAAATAGEALRLAEEHQGEIELLVTDVIMPEMN 778 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L + + P LK ++++G++A ++ ++ L KPF DL +V L Sbjct: 779 GRDLYLQLSRSHPTLKCLYMSGYSANIISHHGALDQDIHFLQKPFPREDLAVKVREAL 836 >gi|58040442|ref|YP_192406.1| putative two-component trancriptional regulator [Gluconobacter oxydans 621H] gi|58002856|gb|AAW61750.1| Putative two-component trancriptional regulator [Gluconobacter oxydans 621H] Length = 126 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 1/109 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +LL EDD +R L + L +G V +N A A + EP L+ D+ +P+ DG+ Sbjct: 7 VLLIEDDFLIRTCLAEFLLDSGLTVREADNCAEARAIIGAEPKLDALVADMTLPDGDGMT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 L + A E PDL V++I+G + + S P + +SKP+ L ++ Sbjct: 67 LVQPARERWPDLPVIYISGHGDLRRDETSGDPARDRFISKPYTLASILE 115 >gi|26990132|ref|NP_745557.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida KT2440] gi|24985066|gb|AAN69021.1|AE016534_4 sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas putida KT2440] Length = 475 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 54/110 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD+ + + L GYEV+ C++ A ++++ +LTD +P M Sbjct: 1 MEHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G +L R PDLKV+ +TG+ V + L+KP L +L Sbjct: 61 GHDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAEL 110 >gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ K+LL +D+ DMR+ + L GYE NG A K+ E + ++ DI+MPEM Sbjct: 1 MNKYKVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 DGI + + + D+ ++F+T Sbjct: 61 DGIAVCKEIRKT-SDIPIIFLT 81 >gi|148543300|ref|YP_001270670.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152710|ref|YP_001841051.1| two-component system response regulator [Lactobacillus reuteri JCM 1112] gi|227364368|ref|ZP_03848461.1| two component response regulator [Lactobacillus reuteri MM2-3] gi|325683567|ref|ZP_08163083.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|148530334|gb|ABQ82333.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224054|dbj|BAG24571.1| two-component system response regulator [Lactobacillus reuteri JCM 1112] gi|227070681|gb|EEI09011.1| two component response regulator [Lactobacillus reuteri MM2-3] gi|324977917|gb|EGC14868.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 221 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + L A+ +GY+V NNG A ++ +E + +++ DI+MP G+E Sbjct: 2 RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLV 111 + +M +T A+ D +A LSKPF L++L+ Sbjct: 62 ALKEIRATGNRTYIMMLT---AMGEEDDKVTGLDAGADDYLSKPFSLKELL 109 >gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R + L + GYEV NG A +K +++ ++LL+ D++MPE+DG ++ Sbjct: 4 ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63 Query: 65 ARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R E D+ ++ +T L D L KPF ++LV V L Sbjct: 64 CRDVRE-RSDIPIIMLTARGEEFDRVLGFELGADD-------YLVKPFSTKELVARVKAL 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 222 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GY+V +G A ++ L++ D+ +PEMDG+E+ Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR V+ +T V L+ ++ ++KPF L +L+ V LL Sbjct: 64 ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|254786755|ref|YP_003074184.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237683863|gb|ACR11127.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 209 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N ++L+AED+ D LI LG G + +V +G +A+DK++ PF L+L D MP ++ Sbjct: 78 NLRVLIAEDNADSAELLIDVLGDFGVKNIVHAEDGMAAFDKIKASPFDLILCDWDMPHIN 137 Query: 61 GIELARRA 68 G+++ ++A Sbjct: 138 GLDVYKKA 145 >gi|213968363|ref|ZP_03396507.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301384629|ref|ZP_07233047.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058918|ref|ZP_07250459.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302133031|ref|ZP_07259021.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927001|gb|EEB60552.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|330963154|gb|EGH63414.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 245 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQFRRAFNEEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L + R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|170738932|ref|YP_001767587.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168193206|gb|ACA15153.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1113 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I + +DD R + + L G+ ++S +G S D L L DI MP M+G Sbjct: 916 RTIFVVDDDPAHRDLMREILTPLGFTLLSAADGPSCLDLAAGCRPDLFLLDIAMPGMNGW 975 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELAR RA P M ++ +AP +A +++KPF LRD ++ + LL Sbjct: 976 ELARRLRAEGHGPARIAMMSANVHEISPVRGEDAPHDA-IIAKPFDLRDFLSRIQALL 1032 >gi|158430799|pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein From Sinorhizobium Medicae Wsm419 gi|158430800|pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein From Sinorhizobium Medicae Wsm419 gi|158430801|pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein From Sinorhizobium Medicae Wsm419 Length = 132 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM-DGI 62 ILLA+D+ + L AG+ V + ++GA A + ++ ++TDI + DG Sbjct: 8 ILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLKSGAAIDGVVTDIRFCQPPDGW 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++AR A E+DP+ +++I+G A AL SN ++ +L KPF L+ V++LL Sbjct: 68 QVARVAREIDPNXPIVYISGHA--ALEWASNGVPDSIILEKPFTSAQLITAVSQLL 121 >gi|126736290|ref|ZP_01752032.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Roseobacter sp. CCS2] gi|126714111|gb|EBA10980.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Roseobacter sp. CCS2] Length = 457 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSIVTLMRWVDEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G++ + E P + V+ I+ + + L KPF L DL+ R L + Sbjct: 61 GLDQLPKIAEARPGMPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRAARALEV 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|104782054|ref|YP_608552.1| sensory box histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111041|emb|CAK15761.1| putative sensory box histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 680 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPE-MDG 61 +ILL ED +R + + L + G++V +G +A + LL++DI +P ++G Sbjct: 561 RILLVEDQAALRLVIGEVLDEFGHDVEGVEHGPAALALLAHGFVPDLLISDIGLPGGLNG 620 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++A PDL V+FITG+ A D P VL KPF L + + V +LL+ Sbjct: 621 RQVAEACRARHPDLPVLFITGYDESAALSDGQLPARTAVLRKPFELPAIADLVAQLLS 678 >gi|17232371|ref|NP_488919.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134016|dbj|BAB76578.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 407 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 12/128 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N +L+ +D + L L +AG+ V NG SA KV+E +L+L D++MP MD Sbjct: 5 INNSVLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMD 64 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G E R +A D+ V+F+T AL+ N K ++ ++KP +++ Sbjct: 65 GFETCRHLKANPKTKDIPVIFMT-----ALSDTVNKVKGLQIGAVDYITKPIEYEEVLAR 119 Query: 114 VNRLLTIK 121 +N L ++ Sbjct: 120 INVHLELR 127 >gi|330445364|ref|ZP_08309016.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489555|dbj|GAA03513.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 459 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ ++L+ EDD+ +R L+ L AGY+ + + A ++ + ++++D+ M M Sbjct: 1 MNQTRVLVVEDDEGLREALVDTLALAGYQWIEAESAEDALVIMKSQAVDIVVSDVQMAGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ L R P + V+ +T +A + + ++KPF L+N V R Sbjct: 61 DGLGLLRSIKLNWPKVPVLLMTAYANIEDAVAAMREGAIDYMAKPFAPEVLLNMVGRYAP 120 Query: 120 IK 121 IK Sbjct: 121 IK 122 >gi|327481402|gb|AEA84712.1| transcriptional activator CopR [Pseudomonas stutzeri DSM 4166] Length = 227 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 56/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V +G A V P+ LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R ++ V+F+T V L KPF +L+ V LL N Sbjct: 62 VLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120 >gi|312959784|ref|ZP_07774300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311285950|gb|EFQ64515.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 774 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ + LGK G EV+ +G A + E+PF ++L D MP MDG E Sbjct: 652 RILLVEDNPVNQLVAKGMLGKLGCEVIVAAHGGEALKLLEEQPFDMVLMDCNMPVMDGYE 711 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R R + PDL ++ +T A A L+KPF +L Sbjct: 712 ASRQIRRSGRWPDLPIVALTANAMAEERERCRAAGMNDYLAKPFRREEL 760 >gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] Length = 242 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 13/125 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPE 58 + +L+ EDDD +R + + L G+EV +C +GASA + + E P L++ D+++P Sbjct: 12 TRSLLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPG 71 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 + G++L R ++ ++ I+ A + +++ +V L KPF LR+LV Sbjct: 72 LGGLDLCRELRRINNTTPILVIS-----ARDSETDRVLGLEVGADDYLVKPFGLRELVAR 126 Query: 114 VNRLL 118 LL Sbjct: 127 CRALL 131 >gi|218288308|ref|ZP_03492607.1| response regulator receiver protein [Alicyclobacillus acidocaldarius LAA1] gi|258511386|ref|YP_003184820.1| response regulator receiver protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241667|gb|EED08840.1| response regulator receiver protein [Alicyclobacillus acidocaldarius LAA1] gi|257478112|gb|ACV58431.1| response regulator receiver protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 119 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D MR + L K G+ VV +GA A ++ +E L+ DI MPE+DGIE Sbjct: 4 ILVVDDAAFMRMMIKDILTKNGHVVVGEAADGAQAVERYQELRPDLVTMDITMPEVDGIE 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R ++DP+ +++ + A+ ++ + KPF +V V + L Sbjct: 64 AIKRIRQIDPNARIIVCSAMGQQAMVIEAIQAGAKDFIVKPFQADRVVEAVQKAL 118 >gi|189468545|ref|ZP_03017330.1| hypothetical protein BACINT_04948 [Bacteroides intestinalis DSM 17393] gi|189436809|gb|EDV05794.1| hypothetical protein BACINT_04948 [Bacteroides intestinalis DSM 17393] Length = 1346 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD DMR +L +L + Y+V+S +G A D RE ++++DI+MP + G EL Sbjct: 1104 LLLAEDDKDMREYLTDSL-SSEYKVISVPDGGKALDMAREINPDIIISDIIMPVIQGDEL 1162 Query: 65 AR 66 R Sbjct: 1163 CR 1164 >gi|149176552|ref|ZP_01855165.1| putative histidine protein kinase [Planctomyces maris DSM 8797] gi|148844665|gb|EDL59015.1| putative histidine protein kinase [Planctomyces maris DSM 8797] Length = 784 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEM 59 N+ IL+A+DD + ++ L GY++++ +NG A + R E ++ L+ DI MP M Sbjct: 659 NKTILIADDDSIVTLVTVRMLHNLGYQIITASNGREAVEIYRRERHNIQGLVFDISMPHM 718 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G E +L ++F TG A L + A K + + KPF+ L ++ L + Sbjct: 719 TGTEAYESICKLGNPPPILFCTGDATPELRHVNLAAKGYRFIRKPFNQITLEKMMDELFS 778 >gi|114776385|ref|ZP_01451430.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] gi|114553215|gb|EAU55613.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] Length = 706 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 11/112 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGI 62 ILL +D D+RR L + G+ + NG A A K + + L++TD MP MDG+ Sbjct: 588 ILLVDDAPDIRRVHKSMLSRLGHTADTAENGLQALALFKKHTDRYDLVITDYRMPVMDGL 647 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK----NAKVLSKPFHLRDL 110 EL + LD D+ ++ IT + D + + NA ++SKP L L Sbjct: 648 ELTEQIRRLDADVPILMITAYGE-----DRSLQQVDQYNAILVSKPVMLEKL 694 >gi|54294118|ref|YP_126533.1| hypothetical protein lpl1182 [Legionella pneumophila str. Lens] gi|54297131|ref|YP_123500.1| hypothetical protein lpp1176 [Legionella pneumophila str. Paris] gi|53750916|emb|CAH12327.1| hypothetical protein lpp1176 [Legionella pneumophila str. Paris] gi|53753950|emb|CAH15421.1| hypothetical protein lpl1182 [Legionella pneumophila str. Lens] Length = 442 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ D+R L L + G + ++ + +++ +SL+LTD+ +P+ DGIE Sbjct: 5 KVLVIDDEPDIRELLTLTLSRMGLTCDAVSDFKQGIEHIKQNYYSLVLTDMRLPDGDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + P + V IT + V ++ +SKP L+ L + V L+++N Sbjct: 65 IVKFIQKYKPQMPVAVITAYGNVEGAVNTLKAGAFDYVSKPIDLKMLRDLVKTALSMQN 123 >gi|329925988|ref|ZP_08280661.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939519|gb|EGG35870.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 539 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +R + + + GYE + C NG A + V ++LTDI MP MDG Sbjct: 4 ILIVDDEPIVREGIRNRIQWSEHGYECIGDCENGRDALEAVTRHQPDVVLTDINMPYMDG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 +EL+R TE P K++ +TGF Sbjct: 64 LELSRHITERFPKTKIIILTGF 85 >gi|313672899|ref|YP_004051010.1| chea signal transduction histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939655|gb|ADR18847.1| CheA signal transduction histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 699 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D R+ + + L +G+ V N A ++ LL+TD++MP++DG E Sbjct: 581 VLVVDDSSTDRKIMKRLLSSSGWINCVEVTNPHDAITATQDLNIDLLITDVMMPDIDGFE 640 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 LAR E D ++ ++G A N + ++KP +L++++N+++ L+ + Sbjct: 641 LARILRERGFDKPIIAVSGRGEAAANQKAKISGINAFMTKPINLQEMLNKIDELIGV 697 >gi|307609928|emb|CBW99455.1| hypothetical protein LPW_12291 [Legionella pneumophila 130b] Length = 442 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ D+R L L + G + ++ + +++ +SL+LTD+ +P+ DGIE Sbjct: 5 KVLVIDDEPDIRELLTLTLSRMGLTCDAVSDFKQGIEHIKQNYYSLVLTDMRLPDGDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + P + V IT + V ++ +SKP L+ L + V L+++N Sbjct: 65 IVKFIQKYKPQMPVAVITAYGNVEGAVNTLKAGAFDYVSKPIDLKMLRDLVKTALSMQN 123 >gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 611 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +D+ D R L K L K GY V NG A + L+L DI+MPEMD Sbjct: 9 VQEDILIVDDNPDNLRLLSKMLTKKGYHVRKALNGQMALTAAQAVVPDLVLLDIMMPEMD 68 Query: 61 GIELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ + DP ++ V+F++ + + A A ++KPF L +++ V Sbjct: 69 GYEVCTH-LKADPKTAEIPVIFLSALSDAFDKVKAFAVGGADYVAKPFQLAEVLARVQNQ 127 Query: 118 LTIK 121 L ++ Sbjct: 128 LALR 131 >gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1102 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L + GY+V + G A + L+L DI+MPEMDG E+ Sbjct: 13 ILIVDDMVDNLRLLSDLLTEQGYKVRGVSKGTMALKAAKSFSPDLILLDIMMPEMDGYEV 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +A E D+ ++FI+ A + A ++KPF + +++ V L ++ Sbjct: 73 CQHLKAAENTCDIPIIFISALNDAADQLKAFAVGGVDYITKPFRIEEILARVKNHLRLR 131 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ +++ L GY V + NG A RE +L+L DI MP MDG+E Sbjct: 979 ILLAEDNEANISTIVEYLEAVGYRVATALNGVEAIQMARELKPNLVLMDIQMPAMDGLE- 1037 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 A R D + + I ++A+ D V L+KP L+ LV + Sbjct: 1038 ATRQLRADVEFVQLPIIALTSLAMPGDREKCLEVGVNEYLAKPVSLKKLVEAI 1090 >gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +ARR L D + I A A D+ +A ++KPF L +L+ V LL Sbjct: 63 VARR---LRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALL 117 >gi|224372441|ref|YP_002606813.1| DNA-binding response regulator [Nautilia profundicola AmH] gi|223589062|gb|ACM92798.1| DNA-binding response regulator [Nautilia profundicola AmH] Length = 219 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ EDD + + + L G+E VS +G SA + EE F ++L D+ +P M+ Sbjct: 1 MKRKILIVEDDVSLNETVKEFLELNGFESVSVYDGDSALSRAYEESFDIILLDVKLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A+ + D ++FIT + + KPF L++L ++ +L Sbjct: 61 GFDVAKEIRKF-SDTPIIFITSLDSEKDIEKGFLSGGDDYIRKPFSLKELKLRIDAIL 117 >gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 49/103 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + P ++L+D+ MP MDG L Sbjct: 807 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNPVDIVLSDVNMPNMDGYRL 866 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 867 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 909 >gi|126666779|ref|ZP_01737756.1| nitrogen regulation protein NR(I) [Marinobacter sp. ELB17] gi|126628824|gb|EAZ99444.1| nitrogen regulation protein NR(I) [Marinobacter sp. ELB17] Length = 474 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 54/110 (49%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66 + +DD +R L +AL +AG S +NG + ++ E ++++DI MP +DG+ L Sbjct: 9 IIDDDRSIRWVLDRALTQAGLRTRSFDNGDNIMRQLEHEQPDVIISDIRMPGIDGLSLLA 68 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R E P L V+ +T + + S L KPF L D V V R Sbjct: 69 RIAESHPGLPVIIMTAHSDLESAVSSYQTGAFDYLPKPFDLDDAVALVRR 118 >gi|153003556|ref|YP_001377881.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027129|gb|ABS24897.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 456 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 52/103 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D+ MR L L G EV + + + A ++ + L+LTD+ MP MDG+ Sbjct: 4 RSVLVVDDETSMRHLLSVILTDHGREVRAVASASDALRELAAREYDLVLTDVRMPGMDGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L R L P+L V+ ++ + A ++ LSKPF Sbjct: 64 ALLREIQRLQPELTVIVMSAYGAHDAALEAMKAGAYDFLSKPF 106 >gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17] gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17] Length = 230 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 52/118 (44%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ EDD ++ K L +AGY V C +G E F L++ D ++P +D Sbjct: 1 MSRKILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRMLPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + V+ ++ A V D L KPF +L + L+ Sbjct: 61 GLAMVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALV 118 >gi|325271378|ref|ZP_08137906.1| response regulator receiver protein [Pseudomonas sp. TJI-51] gi|324103500|gb|EGC00819.1| response regulator receiver protein [Pseudomonas sp. TJI-51] Length = 125 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMP 57 M + IL+ EDD+ +R ++L Y V + N + + EE +L++TDI MP Sbjct: 1 MTKTILIVEDDELLRDLTAESLSSL-YAVTVTFTANADEALHHLSHEETPALVMTDIHMP 59 Query: 58 -EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHLRDLVNEVN 115 MDG+ LA P L V+ +G A + D++ P A L KP+ + DL + +N Sbjct: 60 GRMDGLGLAHVIWRRWPTLPVILTSGHAII----DTHLLPVRAAFLPKPWGITDLASLIN 115 Query: 116 RLLTI 120 +L+T+ Sbjct: 116 KLVTL 120 >gi|322419278|ref|YP_004198501.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] gi|320125665|gb|ADW13225.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] Length = 347 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+D+D +R + L K G+ + + + +P L L DI+MP Sbjct: 1 MKGNILIADDEDMIRELINITLSKEGFTCFQAASAEEGLEIINSQPLDLALLDIMMPGRS 60 Query: 61 GIELARRATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L + ++ PD V+ IT AL+ N ++ ++KPF+L + LL Sbjct: 61 GIDLLKDIKQVTPDTTVLMITAMNDMDTALSCIHNGAED--YITKPFNLDRV------LL 112 Query: 119 TIKN 122 T+KN Sbjct: 113 TVKN 116 >gi|322420773|ref|YP_004199996.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127160|gb|ADW14720.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1051 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 1/113 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +LL +D++ + LG+ GY+VV+ ++G A + RE ++ D+ MP+MDG + Sbjct: 929 VLLVDDEETICDIGASMLGQLGYQVVTASSGKKALELYREMGGIRFVVLDLTMPQMDGEQ 988 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R LDP+++V+ +G++ + + + KP++++ L + R Sbjct: 989 TFRGLRALDPEVRVIISSGYSEQEVTRKLSGTGYLDFIQKPYNMQALSEVMKR 1041 >gi|302879443|ref|YP_003848007.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582232|gb|ADL56243.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1346 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD+ + + L ++G VV+ NNGA A+ V+++ F +L DI MP MDG E Sbjct: 1011 ILLVEDDEINQEIATEFLVRSGLIVVTANNGAEAFALVQQQAFDAVLMDIHMPVMDGFES 1070 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 R R + ++ ++ A +S++ + +SKPF L+ Sbjct: 1071 TRLIRTLAQGKTIPIIALSASAMAHEKLNSSSAGMSDHVSKPFDPAQLI 1119 >gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] Length = 243 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ +F+ L + + V S +NG A + + L + DI+MP+MDGIEL Sbjct: 17 ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 ARRATELDPDLKVMFITG 82 RR E L +MF++ Sbjct: 77 CRRIRE-KYSLPIMFLSA 93 >gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family [Desulfonatronospira thiodismutans ASO3-1] gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family [Desulfonatronospira thiodismutans ASO3-1] Length = 232 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 16/124 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++D++ L L AGY V +NG REE L++ D+++P MDG+E Sbjct: 5 KILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIAREEQPELIILDLMLPHMDGLE 64 Query: 64 LARRATELD--PDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + RR + D D+ V+ +T L D + KPF +R+L+ + Sbjct: 65 VCRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADD-------YVVKPFSIRELLLRI 117 Query: 115 NRLL 118 +L Sbjct: 118 KAVL 121 >gi|182677962|ref|YP_001832108.1| integral membrane sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633845|gb|ACB94619.1| integral membrane sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 1130 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+A+D+ D R + + L G+ V+S +G +A + VR+ LLL DI MP +DG Sbjct: 923 RTVLVADDNVDHRDLMHELLIPLGFTVLSAPDGVAAMEMVRQWDPDLLLLDISMPNLDGW 982 Query: 63 ELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+AR+ E L+++ I+ A + + KP HL L+ +V LL ++ Sbjct: 983 EVARQLRDEGFTRLRIIIISANAGEIREDVMEKRYHDDQIVKPVHLPGLLEKVQTLLDLE 1042 >gi|188580835|ref|YP_001924280.1| histidine kinase [Methylobacterium populi BJ001] gi|179344333|gb|ACB79745.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 541 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +L+ +D D+ L GY V+ +N +A D + E LL TD++MP M Sbjct: 416 TETVLVVDDRPDVAATAGTILEDFGYTVLVVDNPVAALDILDGEGRIDLLFTDLIMPGGM 475 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A E P ++V+ TG+A ++ ++++KP+ +L V R++ Sbjct: 476 NGVMLARAARERQPRIRVLLTTGYAEASMERTDAGGTEFEIINKPYKRMELARRVRRVI 534 >gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland 1988] gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S] gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] Length = 225 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|146298307|ref|YP_001192898.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152725|gb|ABQ03579.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 227 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L + GY++V+ +NG A K ++E L++ D++M EMDG+E Sbjct: 7 KILLVDDEPDILEIVGYNLAQEGYQIVTASNGKDAIAKAQKELPELIIMDVMMAEMDGME 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 ++ P+L + IT A + + A +A ++KP + LV++V LL Sbjct: 67 ACEHIRKI-PELNNVIITFLTARSEDYSQVAGFDAGADDYITKPIKPKLLVSKVKALL 123 >gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2] Length = 251 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++R L +L AG++VVS NGA A + LL+ D+++P+MDG + Sbjct: 13 LLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGFTV 72 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR ++ + V+F+T + ++KPF L ++V + +L Sbjct: 73 TRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVL 126 >gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1233 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+ ++ + L AGY+VV +NG A D V ++ F +L DI MP MDG+ Sbjct: 1112 ILLVEDNFINQQVASELLKSAGYDVVIADNGQIALDLVAKQEFDAVLMDIQMPVMDGLTA 1171 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 A+ R T L ++ +T A S NA NA + +KP L +L + + +K Sbjct: 1172 AKILRETYSTQQLPIIAMTAHAMSGDKEKSLNAGMNAHI-TKPIVLTELFETLAYWIALK 1230 Query: 122 N 122 N Sbjct: 1231 N 1231 >gi|77458916|ref|YP_348422.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77382919|gb|ABA74432.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 639 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 +L+ +DD + + L G+ V+S +GA A + + E L++TD+ MP+M G + Sbjct: 528 VLVVDDDSLVLTSTVLLLEDLGHRVLSATSGAQALELFDQGEVIDLMITDMAMPQMSGAQ 587 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LA L PDL ++ TG+A + P+ LSKPF+ +LV + R Sbjct: 588 LAHAVRLLKPDLPIILATGYAERLEGFAAGLPR----LSKPFNQLNLVEIIAR 636 >gi|84388086|ref|ZP_00990982.1| chemotaxis CheV [Vibrio splendidus 12B01] gi|84377153|gb|EAP94023.1| chemotaxis CheV [Vibrio splendidus 12B01] Length = 308 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV+S +G AY+K+ E + SL+++DI Sbjct: 182 RRILIADDSTVARKQVQRAIESIGFEVISVKDGKEAYEKLVEMSSEGSIYDQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHAELK-DLYVILHSSLSGV 275 >gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1666 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 10/127 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE----EPFSLLLTDIVM 56 + +++L+ +D+++ R L+ L +EV S GA+A D +RE +P+ ++ D M Sbjct: 1195 VGRRMLVVDDNENARAVLVDMLSSMSFEVDSVEGGAAAIDAIREAMLDQPYEVVFLDWQM 1254 Query: 57 PEMDGIELARRATELD----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 P MDG+E+A R ++ P L + +T + + + A +VL KP + L + Sbjct: 1255 PGMDGLEVAERIHDIRLPFPPHL--IMVTAYGREEIIKGAQAADIGEVLVKPVNPAALFD 1312 Query: 113 EVNRLLT 119 + R+ Sbjct: 1313 SIMRVFA 1319 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED++ + + LG AG V NG A DK + + L+L D+ MP MDG+ Sbjct: 1345 RVLLVEDNELNQEVASEILGDAGLVVDIAANGQIAVDKAKTGHYDLILMDMQMPVMDGVT 1404 Query: 64 LAR 66 R Sbjct: 1405 ATR 1407 >gi|319936946|ref|ZP_08011356.1| DNA-binding response regulator [Coprobacillus sp. 29_1] gi|319807882|gb|EFW04461.1| DNA-binding response regulator [Coprobacillus sp. 29_1] Length = 219 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 12/120 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ +R F+++ K G VV ++G A + +E + ++L DI+MP +DG E Sbjct: 2 KVLLVEDEKLIRLFIVEYFSKQGAAVVEASDGYEAL-SLLDETYDIVLLDIMMPGIDGYE 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + + + D+ ++FI+ AL+ D N K ++ +SKPF L + N LL Sbjct: 61 VCKLIRQ-KSDIPILFIS-----ALSEDENKLKGYELGADDFISKPFTPSLLYAKCNALL 114 >gi|292490612|ref|YP_003526051.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291579207|gb|ADE13664.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 223 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD ++++ L + L + G+ V + +NG A EEP+ ++ D+ +P+ G++ Sbjct: 2 RVLLVEDDRELQKRLHRELTQQGFVVDTADNGVDAEFLGFEEPYEAVILDLGLPQRSGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + D + V+ +T A + LSKPFH +L+ + L+ Sbjct: 62 VLRHWRDHDNRVPVLILTARDAWHEKVEGFKCGADDYLSKPFHTEELLARLQALI 116 >gi|323524615|ref|YP_004226768.1| Fis family two component sigma-54 specific transcriptional regulator [Burkholderia sp. CCGE1001] gi|323381617|gb|ADX53708.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. CCGE1001] Length = 450 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG++VV + SA + + ++++DI +P G++ Sbjct: 7 QVLYIEDDELVRRASVQSLQLAGFDVVGHASVESAAKSISADFSGVIVSDIRLPGASGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 67 LLAQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAL 121 >gi|255011473|ref|ZP_05283599.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 1330 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 46/65 (70%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ ++R +LI++L + +V + +N SA + RE+ S++++D++MP+M+G Sbjct: 1077 KTILIVEDEKELREYLIESLTEFFKKVYAADNAISALEICREKQPSVIVSDVMMPQMNGF 1136 Query: 63 ELARR 67 EL R+ Sbjct: 1137 ELCRQ 1141 >gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1] gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1] Length = 1416 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ DMR ++ + LG+ YEV +G A + L+L+DI+MP +DGI Sbjct: 626 RILVADDNADMRAYVQRLLGEQ-YEVSCAVDGYDALRAAKRSRPDLILSDIMMPGLDGIG 684 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + R E D+ V+ ++ A L KPF R+LV V LL I Sbjct: 685 LLQTVRGDEELRDVPVILLSARAGEEARVHGLRAGADDYLVKPFSARELVVRVGALLKI 743 >gi|242280786|ref|YP_002992915.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] gi|242123680|gb|ACS81376.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] Length = 383 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 9/127 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL DDD L + ++ C++G A + ++ + PF ++++D MPEMDG+ Sbjct: 3 KILFV-DDDVAIHLLFSRISTERLQISCCSSGGDALEALKADGPFHVIVSDYQMPEMDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVN------EVN 115 E RA ++ P + ++G A +A+ D+ N ++L+KP L+ L E + Sbjct: 62 EFLTRAKDVSPSSVRILLSGNADLAMAIDAVNECGVFRILTKPCSLKILKKSLRDALEYH 121 Query: 116 RLLTIKN 122 RL ++N Sbjct: 122 RLSNVEN 128 >gi|254420881|ref|ZP_05034605.1| PAS fold family [Brevundimonas sp. BAL3] gi|196187058|gb|EDX82034.1| PAS fold family [Brevundimonas sp. BAL3] Length = 1245 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 ++LL EDD + + L G EVV +G A ++ F ++LTDIVMP M G+ Sbjct: 1126 RMLLVEDDASVAAVALDLLESFGLEVVLAESGPDALKALQAARFDIMLTDIVMPGGMSGV 1185 Query: 63 ELARRATELDPDLKVMFITGF 83 +LAR+A PD+++ +G+ Sbjct: 1186 DLARQAARDWPDMRIALTSGY 1206 >gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] Length = 240 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 75 VLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 127 Query: 117 LL 118 +L Sbjct: 128 IL 129 >gi|326796866|ref|YP_004314686.1| PAS/PAC sensor protein [Marinomonas mediterranea MMB-1] gi|326547630|gb|ADZ92850.1| putative PAS/PAC sensor protein [Marinomonas mediterranea MMB-1] Length = 410 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 5/122 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL +D++ + L + L K Y V++ G + ++E P L+L+D +MP + G Sbjct: 2 RNVLLVDDENQILMALKRVLRKQEYNVITAQGGENGLAVLKETPIDLILSDYMMPGLSGT 61 Query: 63 ELARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +A ++ PD M ++G F +V + S K L KP++ +L++++N+ L Sbjct: 62 DFLEKAEKMQPDSIRMILSGHSDFESVMESLKSGVVH--KYLVKPWNNEELIDQINQSLA 119 Query: 120 IK 121 K Sbjct: 120 GK 121 >gi|260642655|ref|ZP_05416773.2| two-component system sensor histidine kinase/response [Bacteroides finegoldii DSM 17565] gi|260621140|gb|EEX44011.1| two-component system sensor histidine kinase/response [Bacteroides finegoldii DSM 17565] Length = 1343 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 44/62 (70%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ +M +L K + ++ Y+V++ NG A D ++ +P ++L+D++MPEMDG++L Sbjct: 1091 ILLVDDNIEMLDYL-KGILQSKYQVITATNGKIALDIMKTQPVDIVLSDVMMPEMDGLQL 1149 Query: 65 AR 66 + Sbjct: 1150 CK 1151 >gi|253700815|ref|YP_003022004.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251775665|gb|ACT18246.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 452 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L + L GY V NG+ A +++ E ++++DI+MPEMDG EL Sbjct: 14 ILIVDDSPTQAKLLEQLLAGEGYRVAVARNGSDALEQINERRPDMVISDILMPEMDGFEL 73 Query: 65 ARRATELD 72 RR E++ Sbjct: 74 CRRVREME 81 >gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 235 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP MDGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQSENYHMVIMDIMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 AMRRIRE 71 >gi|115522160|ref|YP_779071.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115516107|gb|ABJ04091.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 1060 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 ++ IL+ EDD +R ++I L GY V+ N A+A + + F LL TDIVMP +M Sbjct: 925 SETILVVEDDTMVRNYVIAQLKALGYHTVAAANAAAALELCSQGVAFDLLFTDIVMPGKM 984 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G++LA + LKV++ +G++ A+ ++ N +L+KP+ +L + LT Sbjct: 985 NGVQLAIAMAKRRDFLKVLYTSGYSENAVIHNNRLDPNILLLTKPYRRSELARMIRLALT 1044 >gi|325921182|ref|ZP_08183048.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548324|gb|EGD19312.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 698 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 Q++L+ EDD+ +R + + L + GYE + +A + + LL+TD+ +P ++G Sbjct: 578 QQVLVVEDDEQVRLLVTELLNELGYEADVVADADAALPILASQRRIDLLVTDVGLPGLNG 637 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 638 RQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVL 694 >gi|307720005|ref|YP_003891145.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM 16294] gi|306978098|gb|ADN08133.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM 16294] Length = 564 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L EDDD R L + + ++ NG ++K ++ F L++TDI MP+++G+E Sbjct: 17 KVLFVEDDDTSREALTQFMSVFFDVIIEAYNGEDGWNKFNDDDFDLVITDINMPKINGLE 76 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA E+ P L ++ ++ + +S + KPF + ++ +++++ Sbjct: 77 LAAMIREVKPYLPILIVSAHRETSFFLESIKLNVDGYILKPFEMDQFLSVLSKVV 131 >gi|294500926|ref|YP_003564626.1| chemotaxis protein CheY [Bacillus megaterium QM B1551] gi|295706272|ref|YP_003599347.1| chemotaxis protein CheY [Bacillus megaterium DSM 319] gi|294350863|gb|ADE71192.1| chemotaxis protein CheY [Bacillus megaterium QM B1551] gi|294803931|gb|ADF40997.1| chemotaxis protein CheY [Bacillus megaterium DSM 319] Length = 120 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL+ +D MR + L K GYEVV+ +G A + +E L+ DI MPEM Sbjct: 1 MGNRILIVDDAAFMRMMIKDILTKNGYEVVAEAADGQQAVELFKEHAPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + + D KV+ + A+ D+ + KPF ++ +++ + Sbjct: 61 DGITALKEIKTIKSDAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVLEAISKAI 119 >gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 742 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ LL EDD R + + LGK G EV+S NG A + ++ E L+ D+ MP MDG+ Sbjct: 625 RRFLLVEDDSVNRMAMERILGKFGCEVISAGNGLEAVEILKRENVDLVFMDVQMPVMDGM 684 Query: 63 ELARRA-TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R EL D+ ++ +T +A +SKP + L VN +L Sbjct: 685 EATRIIREELGLDVPIVAMTAYAMAGDRERFLQGGMDSYVSKPVDMARLKETVNSIL 741 >gi|218778754|ref|YP_002430072.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218760138|gb|ACL02604.1| Response regulator receiver domain protein (CheY-like) [Desulfatibacillum alkenivorans AK-01] Length = 123 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++ L +AGY V + +G ++E+P LL+ DI+MP+ DGIE Sbjct: 5 EILIIDDEKEICTIFKMTLERAGYSVRAAQDGDEGIRLLKEKPVDLLIVDIIMPDKDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRLL 118 + P +K+M ++G ++ N K L KP L++ V LL Sbjct: 65 TIVETRKNSPHVKIMAVSGGGRISSNEYLRMAKTLGANVTLEKPVTRDVLLSTVKELL 122 >gi|115376872|ref|ZP_01464094.1| two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|115366114|gb|EAU65127.1| two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] Length = 146 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-------ASAYDKVREEPFSLLLTDIVM 56 ++LLAEDD +MR L +AL ++G+ V +G + + E+ LL++D+ M Sbjct: 22 RLLLAEDDSEMRCMLSRALRRSGFHVTELRDGRETVSLLSHCATQTPEQMPHLLISDVRM 81 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 P G+E+ L V+ IT F + ++ A+V+ KPF L +L Sbjct: 82 PGCTGLEVLAHLRRSHSCLPVILITSFGDEETHEEARRLGAAQVIDKPFDLDELC 136 >gi|77165824|ref|YP_344349.1| two component sigma-54 specific, transcriptional regulator, Fis famliy [Nitrosococcus oceani ATCC 19707] gi|76884138|gb|ABA58819.1| two component Sigma-54 specific, transcriptional regulator, Fis famliy [Nitrosococcus oceani ATCC 19707] Length = 449 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEM 59 M+ +L+ E + +R L L AG+ V S G +A ++ + + LLL+DI + Sbjct: 2 MHPTVLVVEHEPALREALCATLSVAGFPVKSVPEGKAALVQLEKNKHIGLLLSDIQTQPL 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 D L RRA PDL V+FI + + D+ L KPF + L++ V R + Sbjct: 62 DSSTLLRRARTQKPDLPVLFIAAHSTIHTAIDALDEGAVDYLLKPFETKALLDRVRRYVG 121 Query: 120 I 120 + Sbjct: 122 V 122 >gi|332799189|ref|YP_004460688.1| response regulator receiver protein [Tepidanaerobacter sp. Re1] gi|332696924|gb|AEE91381.1| response regulator receiver protein [Tepidanaerobacter sp. Re1] Length = 119 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D MR + L K GYEV NGA A E L++ DI MPEMDGIE Sbjct: 4 ILIVDDAAFMRMMIKDILTKNGYEVSGEAENGAVAVKMYDELKPDLVIMDITMPEMDGIE 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ +D K++ + A+ D+ + KPF ++ V + L+ Sbjct: 64 AVKKIKAMDSSAKIIMCSAMGQQAMVIDAIQAGARDFVVKPFQPERVLEAVKKALS 119 >gi|332798325|ref|YP_004459824.1| response regulator receiver protein [Tepidanaerobacter sp. Re1] gi|332696060|gb|AEE90517.1| response regulator receiver protein [Tepidanaerobacter sp. Re1] Length = 139 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 58/109 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +D+ ++ L + L +G+ V + +N A + V+ + +++ D+ +PEMDG Sbjct: 3 SYKVLIVDDEYWVKIMLQEVLINSGFTVFTASNHIEAVEVVKNDQPDIVILDVNLPEMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I L + E+ D+K +FI+G++ + A KPF + + Sbjct: 63 ISLLSKIQEIKSDIKAVFISGYSDAGCVEMAKARGALGFFIKPFDILEF 111 >gi|329888171|ref|ZP_08266769.1| cell cycle histidine kinase CckA [Brevundimonas diminuta ATCC 11568] gi|328846727|gb|EGF96289.1| cell cycle histidine kinase CckA [Brevundimonas diminuta ATCC 11568] Length = 442 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL ED+ +R + L + GYEV+ +G A E +L++D++MP +DG Sbjct: 323 RILFVEDEAAVRGIAARLLRQRGYEVIEAADGEEALILAEEWAGQIDMLISDVIMPGLDG 382 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+A D VMFI+G+A + L KP ++ L V + L Sbjct: 383 PSLLRKARPFLGDAPVMFISGYAESDFSDLLQDEVGVSFLPKPLDIKTLAERVKQEL 439 >gi|320167782|gb|EFW44681.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC 30864] Length = 1463 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +ILLAED+ +R K L GY V NNG A V+ PF +L DI MPE+DG+ Sbjct: 1330 RILLAEDNPVNQRVTTKLLYVLGYRNVELANNGLEAVAAVKARPFHCVLMDINMPELDGV 1389 Query: 63 ELARRATELDPDL---KVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNR 116 + R E DP + + +I A L D A LSKP H DL + R Sbjct: 1390 SASARIME-DPAIAQHRKPYIVAMTANVLVADRQRCVAAGMQGYLSKPCHKVDLDRALRR 1448 Query: 117 LL 118 + Sbjct: 1449 CI 1450 >gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL N1-067] Length = 236 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + KAG+EVV+ +G++ Y+ E L++ D+++PEMDGIE Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + D+ ++ +T + L D ++KPF R++V + Sbjct: 63 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADD-------YMTKPFSPREVVARIKA 115 Query: 117 LL 118 +L Sbjct: 116 IL 117 >gi|308272867|emb|CBX29471.1| hypothetical protein N47_J04520 [uncultured Desulfobacterium sp.] Length = 141 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KIL+ +D+ ++K L K GYE + +GASA V E+ F +++ DI MP M Sbjct: 1 MNKPKILIVDDEKAFANNIVKLLTKRGYEAAAVYDGASAVRIVDEKVFDVIILDIKMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DGI + + +V+ +TG ++ + + KP + DL+ ++ + Sbjct: 61 DGIATLKEIKKKGIKSEVVILTGHGSIETGTEGIRLGAFDFVMKPITIDDLLGKIYQ 117 >gi|288942184|ref|YP_003444424.1| response regulator receiver protein [Allochromatium vinosum DSM 180] gi|288897556|gb|ADC63392.1| response regulator receiver protein [Allochromatium vinosum DSM 180] Length = 122 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD+ R L + + + GY+V + NG A + L++TDI+MPE DGIE Sbjct: 3 KVLIVDDDELFRAMLTEMVQREGYQVSTATNGNEALAAIEHSRPDLVITDILMPEKDGIE 62 Query: 64 LARRATELDPDLKVMFITGF-AAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 L + + + ++ ++G +++L + + K V L KPF DL + L Sbjct: 63 LIMELAQRESRIPIIAVSGGRRSISLEFNLESAKLMGVRATLPKPFTREDLRRAITEAL 121 >gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM 17393] gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM 17393] Length = 1342 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++++R L++ K Y V +G DK +E ++L+DI+MP+M GIE Sbjct: 1093 KILIVEDNEELRGLLVRLFSKV-YSVCEAQDGEEGLDKTKEIQPDIVLSDIMMPKMSGIE 1151 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ + V+ +T A ++KPF+++ L N L+ Sbjct: 1152 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1208 >gi|170701267|ref|ZP_02892234.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria IOP40-10] gi|170133826|gb|EDT02187.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria IOP40-10] Length = 859 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 1/104 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + LL +DD ++ R L +ALG+ GYE++ + A + + ++++D MP + GI Sbjct: 705 HRTLLVDDDREVLRMLRQALGRDGYEILDTTDPDEALVLLTQHRVGVIVSDFRMPSLSGI 764 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPF 105 +L +R L PD+ + ++G+ A D+ + K+L KP+ Sbjct: 765 DLLQRVKALYPDIVRILLSGYGEGASIADAAGNGSVQKLLIKPW 808 >gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece sp. CCY0110] gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece sp. CCY0110] Length = 458 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ IL+ +D + L L Y+V +G SA + V+ EP L+L DI MP +D Sbjct: 2 ISETILIVDDQLPNLKVLSTMLEGKNYKVRKAVDGESAIEAVQIEPPDLILLDIKMPNID 61 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ +R D D+ ++FI+ + V + ++KPF +++ +N L Sbjct: 62 GYEVCQRLKSDDKTKDVPIIFISALSEVFDKVKAFEVGGIDYITKPFQEEEILARINSQL 121 Query: 119 TIK 121 TIK Sbjct: 122 TIK 124 >gi|167032110|ref|YP_001667341.1| CheA signal transduction histidine kinase [Pseudomonas putida GB-1] gi|166858598|gb|ABY97005.1| CheA signal transduction histidine kinase [Pseudomonas putida GB-1] Length = 767 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R K LG GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 644 KRILVVDDSLTVRELQRKLLGNRGYDVAVAVDGMDGWNALRGEDFDLLITDIDMPRMDGI 703 Query: 63 E---LARRATELDPDLKVMFIT 81 E L RR L L VM ++ Sbjct: 704 ELVTLVRRDQRLQ-SLPVMVVS 724 >gi|108763819|ref|YP_629338.1| sigma-54 dependent DNA-binding response regulator Nla19 [Myxococcus xanthus DK 1622] gi|34329413|gb|AAQ63909.1| mutant NtrC-like activator [Myxococcus xanthus] gi|108467699|gb|ABF92884.1| sigma-54 dependent DNA-binding response regulator Nla19 [Myxococcus xanthus DK 1622] Length = 482 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D +MR L Y V G A ++ LLLTD+ M MDG+ Sbjct: 12 RLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMDGLT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RRA E+ P L+V+ +T F ++ ++ ++KPF +L V R L Sbjct: 72 LLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERAL 126 >gi|28868500|ref|NP_791119.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851738|gb|AAO54814.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|331015209|gb|EGH95265.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 245 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQFRRAFNEEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L + R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|320325516|gb|EFW81578.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320327196|gb|EFW83210.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 444 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV ++ E ++LTD+ MP M Sbjct: 1 MLNAVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAQLPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 822 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 40/63 (63%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ ++ +I L + G +V NNG A+++ +E+ F L+ DI MP MDG+E Sbjct: 695 KVLVAEDNPINQKLIIATLSRFGIDVAIANNGEEAFERRKEDNFDLIFMDIQMPVMDGVE 754 Query: 64 LAR 66 R Sbjct: 755 ATR 757 >gi|319779529|ref|YP_004130442.1| two-component response regulator [Taylorella equigenitalis MCE9] gi|317109553|gb|ADU92299.1| two-component response regulator [Taylorella equigenitalis MCE9] Length = 206 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 57/116 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD+ +R L L GY V + +G D + + S+L+TD+ MP M G++L Sbjct: 8 IYIVDDDNAVRDSLRFLLETNGYIVETFPSGELFLDSYKPDSVSILITDVRMPGMSGLQL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 D+ ++FITG V + + + KPF+L + ++RL+ + Sbjct: 68 QEEMNNRKIDIPIVFITGHGTVPMAVSTMQRGAVDFIEKPFNLTHIQEVISRLINV 123 >gi|291613756|ref|YP_003523913.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291583868|gb|ADE11526.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 837 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++ + K L ++V NG A DK+ E + LL+ D+ MP+M G+E Sbjct: 580 RILVAEDNGTSQQIIEKILKHGNHKVDMVENGEQALDKLEENTYDLLILDMNMPQMGGLE 639 Query: 64 LAR--RATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + RA P D V+ +T A + + L+KP L++ V RL Sbjct: 640 VVKVHRALSRRPLDTPVIILTANATLEAKLECERAHINAYLTKPVDALTLLDTVARL 696 >gi|298530357|ref|ZP_07017759.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509731|gb|EFI33635.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] Length = 388 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +++ +D + + L + L +GY VV+ +G A + P L+L DI MPEMD Sbjct: 5 MQKTLMIIDDYPENLKVLQEMLEVSGYRVVAFPSGPLALKAADKNPPDLILLDIKMPEMD 64 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ RR D ++ V+FI+ V + + A ++KPFH ++ V L Sbjct: 65 GFEVCRRLKAHDKLKEIPVIFISALDQVQDKIRAFSQGGADYITKPFHPEEVHARVTSHL 124 Query: 119 TIKN 122 K+ Sbjct: 125 ASKS 128 >gi|192359807|ref|YP_001983332.1| putative two-component, response regulator [Cellvibrio japonicus Ueda107] gi|190685972|gb|ACE83650.1| putative two-component, response regulator [Cellvibrio japonicus Ueda107] Length = 821 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ EDD DM + L AG EV+ N + +K L + D+ MPEM+GIE Sbjct: 257 RVMIVEDDQDMAELEAEILRYAGMEVLCINRPLQSLEKANTFKPDLAILDMHMPEMNGIE 316 Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 LAR + DP+ L ++F+T V L+ A +L KP L+ + L Sbjct: 317 LARLLRQ-DPEFLLLPIIFVTADTDVQLHRQIQALGVNALLVKPLAAEQLIKLCEQALVS 375 Query: 121 KN 122 N Sbjct: 376 TN 377 >gi|146282031|ref|YP_001172184.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145570236|gb|ABP79342.1| probable two-component response regulator [Pseudomonas stutzeri A1501] Length = 420 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G+ V+ NG + E L++ D+ MP+MDG+EL Sbjct: 34 LLIIDDDDVVRASLAAYLDDSGFRVLQAANGPQGMELFESEQPDLVICDLRMPQMDGLEL 93 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 R+ +E DL V+ ++G ++ ++ A L KP L L + V R L Sbjct: 94 IRQISERQIDLPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAMLEHSVRRAL 148 >gi|241763639|ref|ZP_04761689.1| response regulator receiver protein [Acidovorax delafieldii 2AN] gi|241367114|gb|EER61480.1| response regulator receiver protein [Acidovorax delafieldii 2AN] Length = 120 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL +D MR+ + L AGY VV +G A +KV L+L D MP +DGI Sbjct: 2 QSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKVETHDIHLVLADQNMPRLDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ E P K ++ +T ++ + A L KPF L+ + +++ Sbjct: 62 GLTRKLRE-HPKFKTIPILILTTESSDQMKQAGRAAGATGWLVKPFDPNRLIEVIQKVI 119 >gi|239993828|ref|ZP_04714352.1| two-component system response regulator [Alteromonas macleodii ATCC 27126] Length = 446 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +LL +DD + R L L GYEV + +G SA K++ + + ++L+D+ MP +DG Sbjct: 8 NPNLLLVDDDKSLLRLLTIRLEGEGYEVTAVEDGQSALRKLQNDNYDVVLSDLRMPGLDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVA 87 + L + D+ V+ +T +A Sbjct: 68 LSLFEEIMGIRKDIPVILMTAHGTIA 93 >gi|330938965|gb|EGH42452.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330975743|gb|EGH75809.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 245 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|302037098|ref|YP_003797420.1| CheY like response regulator [Candidatus Nitrospira defluvii] gi|300605162|emb|CBK41495.1| Response regulator, CheY like [Candidatus Nitrospira defluvii] Length = 121 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 11/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D+ +R L + L ++G++VV +G A D ++ LL+ D++MPE+DG+E Sbjct: 4 IMVIDDEPSIRGLLREVLERSGHKVVEAKDGREALDLYQKHKADLLIMDLLMPEVDGLEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS------KPFHLRDLVNEVNRLL 118 + T D K++ +TG D N AK+ KPF L++++N V L Sbjct: 64 TLQLTREYMDTKIIAMTG-----AQGDRNFLDIAKLFGAHRTFEKPFDLKEMLNAVEAEL 118 Query: 119 TIK 121 K Sbjct: 119 AQK 121 >gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1235 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 K L+ +D+ + + +EV + NG+ A K+ + LLL D +MPEMDGI Sbjct: 968 KTLVVDDNPTALQIYATVMRDFHFEVDTAANGSEALYKLEKSSVDLLLLDWMMPEMDGIQ 1027 Query: 63 ---ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 EL R + LD V+ +TG+AA L D++ +L KPF L +E+ Sbjct: 1028 VIEELDRMVADGRLDKRPIVIMMTGYAAEPLKEDADRSNIYAMLQKPFKASALFDEI 1084 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEV +NG A D + E+ F +L DI MP MDG+ Sbjct: 1113 VLLVEDNFINQQVATELLKSAGYEVDVADNGQIAIDMIAEKDFDAVLMDIQMPVMDGLT- 1171 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTIK 121 A + L+ + I A A++ D +A + ++KP L +L + ++ + K Sbjct: 1172 ATKEIRKHFSLQELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELFDTLSYWIKQK 1231 Query: 122 N 122 + Sbjct: 1232 D 1232 >gi|253567420|ref|ZP_04844868.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|251943802|gb|EES84341.1| two-component system response regulator [Bacteroides sp. 3_2_5] Length = 447 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ EDD L LGK G+ V S +N A A + +P L+L+D+ +P+ DGI Sbjct: 2 RSILIVEDDITFGMMLKTWLGKKGFNVSSVSNIARAQKHIDAQPVDLILSDLRLPDHDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E + + ++ +TG+A + + ++KP + +L+ +++ L K Sbjct: 62 HLLKWMGEKELHIPLIIMTGYADIQSAVQAMKLGAQDYIAKPVNPEELLKKMSEALQKK 120 >gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 263 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV----REEPFSLLLTDIV 55 MN+ +IL+ EDDD R L L G+EV + +NG +A + E P L++ D + Sbjct: 1 MNRNRILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWM 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +P +DGI L RR + V+ +T A+ L+KPF +L+ V Sbjct: 61 LPGIDGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVR 120 Query: 116 RLL 118 LL Sbjct: 121 ALL 123 >gi|78222273|ref|YP_384020.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193528|gb|ABB31295.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 508 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 3/115 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ D+ F + L + GY+VV+ + A + E F++ + D+ +P+ DG+ Sbjct: 5 KVLIIDDEADVCTFFRRLLTRKGYDVVTASKEPEAMRAIEEHRFTVAMVDLKLPDTDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + P +V+ +TG++ + + + L KPF D ++E+ L+ Sbjct: 65 LLQAIKARQPACEVIIMTGYSTIKTAVAAMQLGAYEYLEKPF---DDIDEIEALI 116 >gi|54307967|ref|YP_128987.1| putative chemotaxis protein CheY [Photobacterium profundum SS9] gi|46912393|emb|CAG19185.1| putative chemotaxis protein CheY [Photobacterium profundum SS9] Length = 122 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ + AL AGYEVV +G DK+ + +L++TD+ MP MD Sbjct: 1 MAKTILILDDSAPIRQVVGIALRGAGYEVVEAKDGIDGIDKLNGQKLNLIITDVNMPRMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI + ++ P K ++ +T + + A + KPF L++ V +L Sbjct: 61 GITFVKEVKKM-PRYKFTPIIILTTESQDNKKQEGRAAGAKAWVVKPFQPPQLLDAVAKL 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|317403467|gb|EFV83975.1| two component response regulator for C4-dicarboxylate transporter [Achromobacter xylosoxidans C54] Length = 466 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 58/111 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + +DDD++RR ++ L G EV + + A + + +++TDI MP++DG++L Sbjct: 22 VAFIDDDDELRRANVQTLKLRGIEVQAHASARGALATLNRDFDGVVVTDIRMPDIDGLQL 81 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +R +DP++ V+ ITG +A+ L+KP+ LV + Sbjct: 82 FQRLRAIDPEIPVILITGHGDIAMAVQCMRDGAYDFLAKPYPPDRLVTAIT 132 >gi|170692987|ref|ZP_02884148.1| integral membrane sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170141985|gb|EDT10152.1| integral membrane sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 720 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 20/130 (15%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+++ +D R +++ LG+ G+++V G ++ E +L++TD+VM +MDG+ Sbjct: 510 RKVVVIDDVAMNRAVMVEYLGRLGFQIVEATGGRQGLARILSERPALIVTDVVMADMDGL 569 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-----------KVLSKPFHLRDLV 111 E RR + I GFA V + S +P LSKP L+ Sbjct: 570 EATRRLRQ---------IQGFANVPVIATSASPSGVGEQRSLAAGANAFLSKPIDFDKLL 620 Query: 112 NEVNRLLTIK 121 ++ RLL ++ Sbjct: 621 AQLARLLDLE 630 >gi|91200751|emb|CAJ73803.1| strong similarity to sigma 54 response regulator protein [Candidatus Kuenenia stuttgartiensis] Length = 469 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 1/111 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 N KIL+ ED D MR L+ A GY V ++G A K+ + + L++TD+ M +++ Sbjct: 4 NYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKKVN 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E+ +P +V+ IT + A++ + ++KPF ++++ Sbjct: 64 GLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEML 114 >gi|89095495|ref|ZP_01168403.1| DNA-binding response regulator [Oceanospirillum sp. MED92] gi|89080242|gb|EAR59506.1| DNA-binding response regulator [Oceanospirillum sp. MED92] Length = 241 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD ++ + + L K GY V NG + F L+L D ++PE+DG+E Sbjct: 18 RILLIEDDREVSNSIAEILSKKGYHTVQSYNGREGLVTAINQQFHLILLDKMLPELDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + D V+ ++ A D + L KPF++ +L+ + LL Sbjct: 78 LLHRLRKYR-DTPVVMLSACGAEQDRIDGFSSGADDYLPKPFNMTELLFRIEALL 131 >gi|116748067|ref|YP_844754.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] gi|116697131|gb|ABK16319.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] Length = 142 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 59/112 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D++ R L K LG G E + + A +++ P+ ++L D+ MPE+ GIE Sbjct: 6 KVLIVDDEERFRITLRKLLGVQGVEANTAGSAREALEELNNRPYDVVLLDVRMPEISGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + DL+V+ +TG A+V + + + L KP + +LV ++ Sbjct: 66 ALAEIKKTHRDLEVIILTGHASVDIAVEIMRLGGYEYLLKPCAMDELVAKIE 117 >gi|288960610|ref|YP_003450950.1| two-component response regulator [Azospirillum sp. B510] gi|288912918|dbj|BAI74406.1| two-component response regulator [Azospirillum sp. B510] Length = 122 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D MR+ + L AGY+VV +G A K + F+++LTD+ MP MD Sbjct: 1 MAKTILTVDDSASMRQMVKLTLSTAGYQVVEAADGREALAKAKGGVFNMVLTDLNMPNMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R L + ++F+T + ++ A + KPF L+ V +++ Sbjct: 61 GLTLIRELRTLSTYRGVPIVFLTTESGADRKAEAKAAGATAWIVKPFQQDQLLGLVRKVI 120 >gi|253568914|ref|ZP_04846324.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840933|gb|EES69014.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1354 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L + + Y+V + ++G A D ++++ S++L+D+VMP M G Sbjct: 1092 DAKMLIVEDNESIKQML-AGIFETFYQVTTASDGVEALDIIQKDMPSIILSDVVMPRMSG 1150 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T AV N + ++KPF+ L++ N L+ Sbjct: 1151 TELCKQIKTDFNTCHIPVVLLTARTAVEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1209 >gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae NTUH-K2044] gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 946 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ V+ N+G A + + ++ ++L+D+ MP MDG L Sbjct: 825 ILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNVLSKQHIDIVLSDVNMPNMDGYRL 884 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 885 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 927 >gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM 16795] gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM 16795] Length = 222 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ EDD ++ L + L GY+V N+G ++ ++L+L DIVMP +D Sbjct: 1 MEKYILVVEDDYKSQQLLQQFLTSNGYKVDCANDGLEGIQMYKDRNYNLILLDIVMPNLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-----KPFHLRDLVNEVN 115 G + + + + D+ ++F+T AL+ +S+ K +L KPF L+ + Sbjct: 61 GFSMCKMIRK-ESDVPIIFVT-----ALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIE 114 Query: 116 RLL 118 +L Sbjct: 115 AVL 117 >gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3] gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3] Length = 946 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ V+ N+G A + + ++ ++L+D+ MP MDG L Sbjct: 825 ILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNVLSKQHIDIVLSDVNMPNMDGYRL 884 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 885 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 927 >gi|154500437|ref|ZP_02038475.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC 29799] gi|150270789|gb|EDM98081.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + + L Y V C +G A++++ E + L++ D+ +P MDG++ Sbjct: 2 KILVVEDERQLCDDIAEDLELERYTVERCYDGLEAWERILVESYDLVILDLNLPGMDGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R P+L+V+ ++ +++A + L+KPF L +L V LL Sbjct: 62 ILRSVRREKPELRVLILSARSSLANRVEGLDLGADDYLTKPFELEELEARVRSLL 116 >gi|88602715|ref|YP_502893.1| response regulator receiver domain-containing protein [Methanospirillum hungatei JF-1] gi|88188177|gb|ABD41174.1| response regulator receiver domain protein (CheY-like) [Methanospirillum hungatei JF-1] Length = 120 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR L+ L + G+E+V +G A + + L+L DI+MP+MDG+ Sbjct: 3 QVLVVDDTRFMRTILVNILTEEGFEIVGEAEDGQQAVELYLKTKPDLVLMDIIMPKMDGM 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++P KV+ +T +V + + + KPF + ++ E++++L Sbjct: 63 MALKTILGVNPAAKVIMVTAIQSVEMAKLAFKCGALSYIIKPFQKQGILQEIDKVL 118 >gi|76666632|emb|CAJ31153.1| transcriptional regulatory protein [uncultured sulfate-reducing bacterium] Length = 458 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 61/120 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ ED+ +R + AL K G+ V ++G + ++++D+VMP+M G Sbjct: 5 GRRLLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++L +R L P V+ IT V ++ A ++KPF + LV ++ + + + Sbjct: 65 MDLLKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNVCSTR 124 >gi|53715398|ref|YP_101390.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60683366|ref|YP_213510.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|265768295|ref|ZP_06095554.1| nitrogen regulation protein NR(I) [Bacteroides sp. 2_1_16] gi|52218263|dbj|BAD50856.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60494800|emb|CAH09606.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|263252230|gb|EEZ23778.1| nitrogen regulation protein NR(I) [Bacteroides sp. 2_1_16] gi|301164852|emb|CBW24412.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 447 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ EDD L LGK G+ V S +N A A + +P L+L+D+ +P+ DGI Sbjct: 2 RSILIVEDDITFGMMLKTWLGKKGFNVSSVSNIARAQKHIDAQPVDLILSDLRLPDHDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + E + + ++ +TG+A + + ++KP + +L+ +++ L K Sbjct: 62 HLLKWMGEKELHIPLIIMTGYADIQSAVQAMKLGAQDYIAKPVNPEELLKKMSEALQKK 120 >gi|310819135|ref|YP_003951493.1| Sigma-54 dependent DNA-binding response regulator SasR [Stigmatella aurantiaca DW4/3-1] gi|309392207|gb|ADO69666.1| Sigma-54 dependent DNA-binding response regulator SasR [Stigmatella aurantiaca DW4/3-1] Length = 469 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 51/101 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D D +R + L ++G+ V + +G ++ PF L++TD+ M MDGI + Sbjct: 4 VLIIDDHDTLREGMTLTLTRSGHTVSAARSGTEGLAAYKKTPFDLVVTDLKMEGMDGIAV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + ++P + VM +T F + + ++KPF Sbjct: 64 TQALKAMNPAVVVMVVTAFGTIETAVRAMQEGAYDFITKPF 104 >gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] Length = 1268 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 8/111 (7%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 ED+ R + L + G +V +G A + ++ FSL+L D+ MP+MDG E RR Sbjct: 931 EDNPTNRLVATELLSQQGATIVEAESGVEALAALDQQEFSLVLMDVQMPDMDGYETTRRI 990 Query: 69 TELD--PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 ++ DL ++ +T A A+ D A NA + ++KPFH+ ++V ++ Sbjct: 991 RQMAHFADLPILAMT---ANAMPEDKVACLNAGMNDHIAKPFHIGEVVEKI 1038 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 ++L+ ED++ R L + G V + + A D + + +PF LL D +P Sbjct: 778 QVLIVEDNNTARLIFDDLLQRLGCHVTAVADAEHALDTIEQADANGQPFDLLFIDWKLPG 837 Query: 59 MDGIELAR 66 MDG+ L + Sbjct: 838 MDGLSLTQ 845 >gi|240140924|ref|YP_002965404.1| putative hybrid histidine kinase; HK, ATPase, PAS and a response regulator receiver domain [Methylobacterium extorquens AM1] gi|240010901|gb|ACS42127.1| putative hybrid histidine kinase; HK, ATPase, PAS and a response regulator receiver domain [Methylobacterium extorquens AM1] Length = 604 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +LL ED+ ++ F +AL + GY V + A ++ P F ++ TD+VMP M+G+ Sbjct: 484 VLLVEDNREVGAFATQALAELGYGTVWAMDAEQALAELDRTPERFDVVFTDVVMPGMNGV 543 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ELAR P + ++ +G++ V L D + +L KP+ + DL Sbjct: 544 ELARTILGRTPGMPIVLSSGYSHV-LAEDGH--HGFPLLHKPYSVEDL 588 >gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25] gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25] Length = 223 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ +L+ L + GY V +G + E PF +++ D++MP+MDG E+ Sbjct: 3 ILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMPKMDGWEV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + + D V+F+T +A L KPF +LV + L Sbjct: 63 LRRLRK-EADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTL 114 >gi|168703770|ref|ZP_02736047.1| chemotaxis protein CheY [Gemmata obscuriglobus UQM 2246] Length = 121 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ IL+ +D MR+ + L AGY V+ NG+ A KV L++TD MP M Sbjct: 1 MNKTILIVDDSPTMRQMVGDTLRGAGYAVLEGVNGSDALAKVAGRTVHLVITDFNMPVMG 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ L R P+ + ++ +T + + A ++KPF LV V RL Sbjct: 61 GLVLIERL-RAKPEFRFTPILVLTTESETSRKEQGKAAGATGWVTKPFDPARLVQVVKRL 119 Query: 118 L 118 + Sbjct: 120 M 120 >gi|121535117|ref|ZP_01666934.1| response regulator receiver protein [Thermosinus carboxydivorans Nor1] gi|121306367|gb|EAX47292.1| response regulator receiver protein [Thermosinus carboxydivorans Nor1] Length = 130 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 51/111 (45%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +RR L + L + GY V + NG +E +L L D+ MP MDGIE Sbjct: 6 VLVIDDQPGIRRLLTEVLAEEGYAVYTSANGYEGIAMAKEIKPALTLMDMKMPGMDGIET 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R L KV+ +T + + L + ++KPF + L V Sbjct: 66 LREMKRLGLGEKVLMMTAYGELDLVHQAREMGAYGYITKPFDIIALCQMVR 116 >gi|68637878|emb|CAI36083.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola] Length = 678 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +L+ ED+ +R +++ L + GY+V + A + + LL++D+ +P M+G + Sbjct: 559 VLVVEDETVVRSLIVEVLCELGYQVREAADADEAIPILESRQRVDLLISDVGLPGMNGRQ 618 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA P LKV+ TG+A + N N ++++KPF + L N+++ +L Sbjct: 619 LADLGQIRRPGLKVLLATGYAEGS-NVSGYLASNMEIITKPFAIDTLANKISEML 672 >gi|148258990|ref|YP_001243575.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146411163|gb|ABQ39669.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 529 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ IL+ EDD +R ++ + + GY ++ + A + LL TDI+MP M Sbjct: 409 DETILIVEDDSLVREYVTAQIKRLGYTTLAASKADEALAIIDSATRIDLLFTDIIMPGGM 468 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA A PDL+V++ +G+ A+ +L+KP+ DL + L Sbjct: 469 NGRQLAIEAVRRRPDLRVLYTSGYTENAIVHHGRLDAGVLLLTKPYQSADLARMIRTAL 527 >gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 219 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL ED +RR L+ L G +E++ NG A V++E ++L D+ MP+MDG Sbjct: 10 KLLLVEDHHIVRRGLVFFLKTRGEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPKMDG 69 Query: 62 IELARRATELDPDLKVMFITGFA 84 IE +R + D +KV+ ++ F+ Sbjct: 70 IEATKRLKQYDETIKVLILSSFS 92 >gi|313498635|gb|ADR60001.1| Two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida BIRD-1] Length = 475 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 54/110 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ EDD+ + + L GYEV+ C++ A + ++ +LTD +P M Sbjct: 1 MDHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEHIKRAQPDAVLTDNSLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G +L R PDLKV+ +TG+ V + L+KP L +L Sbjct: 61 GHDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAEL 110 >gi|312891778|ref|ZP_07751285.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295720|gb|EFQ72882.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1330 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+++ R FL + L K Y ++ +NG A D V ++ L+++DI+MPEM G+EL Sbjct: 1074 ILIAEDNEEFRHFLDEQLNKR-YHILLASNGKEALDMVLKQLPDLVISDIMMPEMSGLEL 1132 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A + + ++ +T ++ + + ++KPF++ L V LL Sbjct: 1133 CDALKKNVTTSHIPLLLLTARSSDESQFEGYQVRADAYITKPFNIDILFIRVRNLL 1188 >gi|308273138|emb|CBX29741.1| Acetoacetate metabolism regulatory protein atoC [uncultured Desulfobacterium sp.] Length = 450 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + + L L G+EV++ +NG + EE L+L DI MP +DGIE Sbjct: 5 ILIVDDNPSIIQSLKGLLTDEGFEVITASNGYEGLKLIDEESPDLVLLDIWMPGIDGIET 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++ + +P ++V+ ITG + ++ ++ KP + ++ +N L + Sbjct: 65 LKQIKKDNPYIQVIIITGHGNIETAVNAIKLGAYDLIGKPLSIDKIIVTINNALNFR 121 >gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 224 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+AEDD D+R L L G+ V+ +NGA A D R + + + DI+MP+++ Sbjct: 1 MNPLILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIMMPQLN 60 Query: 61 GIELAR 66 G EL R Sbjct: 61 GFELTR 66 >gi|293115341|ref|ZP_05791015.2| transcriptional regulator, AraC family [Butyrivibrio crossotus DSM 2876] gi|292810512|gb|EFF69717.1| transcriptional regulator, AraC family [Butyrivibrio crossotus DSM 2876] Length = 515 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%) Query: 4 KILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ +D+ R R L+ +LG + +E+ NNG +AYD + F ++LTDI MP M+ Sbjct: 14 KILIVDDEKIERNGIRMLLNSLGYS-FEIAEANNGQTAYDLMSGNEFDIVLTDIKMPFMN 72 Query: 61 GIELARRATELDPDLKVMFITG 82 GIEL ++ + + K + +G Sbjct: 73 GIELIKKCRDNGSEQKFIIFSG 94 >gi|257057242|ref|YP_003135074.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587114|gb|ACU98247.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 6/105 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY+V ++GA A +KV + ++ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLQFNGYQVDLASDGAQALEKVATDRPDAMVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPF 105 +ARR + DL ++ +T AV+ D A +A L KPF Sbjct: 62 VARRLRSVGDDLPILVLTARDAVS---DRVAGLDAGADDYLPKPF 103 >gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126] gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126] Length = 232 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 22/129 (17%) Query: 1 MNQKILLAEDD----DDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56 M + ILL +D+ D R+LI+A GY+V+ ++G + R++ L++TDI+M Sbjct: 1 MKKTILLVDDEINILDIQNRYLIQA----GYDVLVAHDGKEGLELFRKKSIDLIITDIMM 56 Query: 57 PEMDGIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRD 109 P MDG + + P+ +F T ++L D + KPF R+ Sbjct: 57 PNMDGYDFISEVQYIAPNQPFLFTTAKTSEQDKIYGLSLGADD-------FIVKPFSPRE 109 Query: 110 LVNEVNRLL 118 LV VN +L Sbjct: 110 LVLRVNNIL 118 >gi|255691944|ref|ZP_05415619.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622353|gb|EEX45224.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1348 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +LL ED++++ + K L + Y V+ NG A D +++ ++++D++MPEMDG Sbjct: 1099 DNHLLLVEDNEELLYLMEKILSRQ-YHVLVAKNGLEALDIIKDNEIDIIISDVMMPEMDG 1157 Query: 62 IELARRATELDPDLKVMFITGFAAVALNP--DSNAPKNAKV---LSKPFHLRDLVNEVNR 116 +EL R + +L+ I A N D NA +SKPF L+ L +N Sbjct: 1158 LELCR---NIKSNLETSHIPVILLTAKNTAEDRIECYNAGADGYISKPFELKILEARINN 1214 Query: 117 LLTIK 121 + K Sbjct: 1215 FIIYK 1219 >gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] Length = 231 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 4/83 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVREEPFSLLLTDIVMPEM 59 ++IL+ ED+D +R F++ L ++GY VV +NG A+D+ + + F + L DI+MP + Sbjct: 2 KRILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGD-FDIALLDIMMPGI 60 Query: 60 DGIELARRATELDPDLKVMFITG 82 DG E+ +R E + ++ +T Sbjct: 61 DGFEVCKRLRERSSTIGIIMLTA 83 >gi|188583398|ref|YP_001926843.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179346896|gb|ACB82308.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 693 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 2/95 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEM 59 +Q IL+ ED+ ++ RF + L GY V +A ++ PF + +D+VMP M Sbjct: 565 DQCILVVEDNVEIGRFCTQILHDLGYSTVLTQTAEAALAEIEAVPFRFDAVFSDVVMPGM 624 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNA 94 GIELA+R L P++ V+ +G++ V D++ Sbjct: 625 GGIELAKRLRALHPEMPVVLTSGYSHVLAGNDAHG 659 >gi|149278518|ref|ZP_01884655.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149230888|gb|EDM36270.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 253 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ ED+D++R F IK + Y ++ +G + E L+++DI+MPEMDG Sbjct: 3 DRKILVIEDNDEVREF-IKMCLEGEYAIMEARDGKEGWQTAAEHLPDLIISDIMMPEMDG 61 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRL 117 E + R E + V+ +T A VAL ++ L+KP++++ L + ++ L Sbjct: 62 NEFCKLVRQDERTSHIPVIMLT--AKVALEQQLEGLESGADIYLTKPYNIQLLKSYISNL 119 Query: 118 LTIK 121 L K Sbjct: 120 LRSK 123 >gi|50084005|ref|YP_045515.1| component of chemotactic signal transduction system [Acinetobacter sp. ADP1] gi|49529981|emb|CAG67693.1| component of chemotactic signal transduction system [Acinetobacter sp. ADP1] Length = 1437 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ SL+L DI MP+MDG EL Sbjct: 1310 IMVVDDSVTVRKVTSRLLERQGYDVVTAKDGQDALEQLEHIRPSLILLDIEMPQMDGFEL 1369 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R R + L ++ IT + + KPF DL+ ++ LL Sbjct: 1370 TRYIRQHSILNSLPIIMITSRTGEKYREIAQQLGVDDYMGKPFQEDDLLTKIQNLL 1425 >gi|32476783|ref|NP_869777.1| adenylate cyclase-like protein [Rhodopirellula baltica SH 1] gi|32447329|emb|CAD77155.1| adenylate cyclase homolog [Rhodopirellula baltica SH 1] Length = 382 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 MN++ILL +DD + L + L +EV +C +G A +++ +PFS+++ D+ MP M Sbjct: 5 MNERILLVDDDYSLLNTLKRNLS-FDFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGM 63 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVN 115 +G E+ ++A + P+ + +TG + ++ N + + L+KP + D+ +N Sbjct: 64 EGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAIN 120 >gi|116748925|ref|YP_845612.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697989|gb|ABK17177.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 464 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD M+ L + L K GYE S + A D+V+ + L+ D+ +P M Sbjct: 1 MAEKILIVDDDPGMQIALNEFLKKRGYETDSAVSAEEALDRVKHASYDLIFLDVRLPGMT 60 Query: 61 GIELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+ R D +++ IT G VAL N + +KPF L+++ + R L Sbjct: 61 GIDAICRIRNFDEQGEIIVITAHGTRDVALEAVRNGAYD--YFTKPFSLQEMDVVIRRAL 118 >gi|116621338|ref|YP_823494.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116224500|gb|ABJ83209.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 147 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 5 ILLAEDDDD---MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ILL +D+ D +RR L++ + GY V NG E F +++TD MP+MDG Sbjct: 11 ILLVDDNRDGLLVRRSLLE---EVGYRVKMAINGEEGLKLFEAEKFDVVVTDYRMPQMDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHL-RDLVNEVNRL 117 EL ++ LDP +V+ ++GF + N +A K ++P HL R + VNR Sbjct: 68 AELIQKIRILDPQARVILLSGFVEPLGLTEQNTGADAVITKSSNEPAHLVRSVKRLVNRA 127 Query: 118 L 118 L Sbjct: 128 L 128 >gi|186681682|ref|YP_001864878.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464134|gb|ACC79935.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 909 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 8/124 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D + R ++ L + G+E++ ++G DK + L++TD+ MP MDG Sbjct: 530 RRILIVDDRWENRSVVMNLLDEIGFEIIEASDGQEGLDKAMQFLPDLIITDLTMPVMDGF 589 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL RR + + I A+V +S+ K+ V L KP H DL+ ++ + Sbjct: 590 ELTRRLRQQQEFQDLTIIVSSASVF---ESDQHKSLGVGADDFLPKPVHADDLLQKLEKY 646 Query: 118 LTIK 121 L ++ Sbjct: 647 LQLE 650 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + R ++ LG G+E+ NG DK E L++TD+ MP M+G+ Sbjct: 690 RKILIVDDNLENRSIVVNLLGDLGFEITEAINGQDGLDKAVELKPDLIITDLSMPVMNGL 749 Query: 63 ELARR 67 E+ R+ Sbjct: 750 EMIRQ 754 >gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 11/122 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ R ++ L + G+ V + NG A + + +E F L+L D+ MPE++G+E Sbjct: 822 KILLAEDNEINRFLALELLKERGHVVTAVENGRDALNMLAKERFDLVLMDVQMPEVNGVE 881 Query: 64 LARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 RR DP + ++ +T + AL D +A + LSKP + +L + Sbjct: 882 ATRRIRAGKVPGTDPRIPIVALTAY---ALKGDREKFMSAGMDDYLSKPIDMEELDRVLE 938 Query: 116 RL 117 R+ Sbjct: 939 RI 940 >gi|288803009|ref|ZP_06408445.1| response regulator [Prevotella melaninogenica D18] gi|288334526|gb|EFC72965.1| response regulator [Prevotella melaninogenica D18] Length = 534 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +D+ ++ + I L K GYEVV+ +NG A D+ + + F L+L D MP + G+E Sbjct: 2 LLWVDDEIELLKAHIIFLEKKGYEVVTVSNGTDAIDQCQTQTFDLVLLDEQMPGLSGLET 61 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E+ P ++ +T + + K A L KP VN LLT+K Sbjct: 62 LQRIKEIQPATPIVMVTKSEEEDIMNQAIGAKIADYLIKP------VNPNQILLTLK 112 >gi|317126999|ref|YP_004093281.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315471947|gb|ADU28550.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+ R ++ L K G+ V + G + ++ F L+L D+++PEMDG L Sbjct: 7 ILIVEDDKDIARIVVDHLRKEGFHVTWASTGMEGLEDFKQNSFDLVLVDLMLPEMDGFTL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + L+ ++ ++ I+ A D++ + + L+KPF L +L ++ L Sbjct: 67 C-KTIRLESNVPLLIIS-----AKQEDASKIRGLDLGADDYLTKPFSLIELSARIHSHL 119 >gi|262404545|ref|ZP_06081100.1| chemotaxis protein CheV [Vibrio sp. RC586] gi|262349577|gb|EEY98715.1| chemotaxis protein CheV [Vibrio sp. RC586] Length = 308 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV----REEP----FSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV++ +G A+DK+ RE P SL+++DI Sbjct: 182 RRILIADDSSVARKQVQRAIESIGFEVIATKDGKDAFDKLLEMSREGPILSQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHNELK-DLYVILHSSLSGV 275 >gi|284038022|ref|YP_003387952.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283817315|gb|ADB39153.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 939 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL ED+ R + L G +V NG +A +++R+E F ++L D+ MP MDG+ Sbjct: 692 KRILLVEDNAMNRLVVTTILRPYGVTIVEETNGYNAVERLRKETFDIVLMDVQMPVMDGL 751 Query: 63 ELAR-RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E R E+ L ++ +T + + L+KPF ++LV+ + + LT Sbjct: 752 EATRITREEISKSLPIIALTASVIRSEKEECFNVGMNDFLAKPFEGKELVSMLMKWLT 809 >gi|218674527|ref|ZP_03524196.1| two-component response regulator protein regulating C4-dicarboxylate transport system [Rhizobium etli GR56] Length = 448 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + L +DD D+RR + L AG+ V + + +A + + ++TDI MPE+D Sbjct: 3 MAIPVALIDDDGDLRRATAQTLELAGFSVSAYDGAKAALADLPADFSGPVVTDIRMPEID 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G++L ++D DL V+ +TG + + + ++KPF LV V R Sbjct: 63 GLQLFATLKDMDADLPVILMTGHGDIPMAVQAIRDGAYDFIAKPFPADRLVQSVRR 118 >gi|3377515|gb|AAC28085.1| response regulator [Myxococcus xanthus] Length = 509 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D +MR L Y V G A ++ LLLTD+ M MDG+ Sbjct: 12 RLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMDGLT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RRA E+ P L+V+ +T F ++ ++ ++KPF +L V R L Sbjct: 72 LLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERAL 126 >gi|86157981|ref|YP_464766.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774492|gb|ABC81329.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C] Length = 300 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66 +A+D+ D R L + L Y+V S ++G A D R E ++L DI MP +DG E+ Sbjct: 1 MADDEADAREVLAQVLAPE-YDVASASDGQEALDLARAEHPDVVLLDIAMPRLDGFEVLE 59 Query: 67 RATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R DP D+ V+F++G A+ S L KPF R+L V R L + Sbjct: 60 RLRH-DPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 115 >gi|56419767|ref|YP_147085.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56379609|dbj|BAD75517.1| two-component response regulator involved in modulation of flagellar [Geobacillus kaustophilus HTA426] Length = 119 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR + L K G+EVV+ +G A +K +E ++ DI MPEMDGI Sbjct: 3 RVLVVDDAAFMRMMIKDILTKNGHEVVAEAADGRQAIEKYKETQPDVVTMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++D + KV+ + A+ D+ + KPF ++ +N+ + Sbjct: 63 TALKEIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFVVKPFQADRVIEAINKTI 118 >gi|53718066|ref|YP_107052.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia pseudomallei K96243] gi|53724543|ref|YP_104702.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei ATCC 23344] gi|67640753|ref|ZP_00439549.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia mallei GB8 horse 4] gi|76808971|ref|YP_332056.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia pseudomallei 1710b] gi|121599422|ref|YP_991552.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei SAVP1] gi|124384689|ref|YP_001027375.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei NCTC 10229] gi|126438903|ref|YP_001057511.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 668] gi|126449918|ref|YP_001082339.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei NCTC 10247] gi|126454917|ref|YP_001064761.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 1106a] gi|134279944|ref|ZP_01766656.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia pseudomallei 305] gi|167001992|ref|ZP_02267782.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia mallei PRL-20] gi|167717886|ref|ZP_02401122.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei DM98] gi|167736903|ref|ZP_02409677.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 14] gi|167814008|ref|ZP_02445688.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 91] gi|167822531|ref|ZP_02454002.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 9] gi|167844113|ref|ZP_02469621.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei B7210] gi|167892616|ref|ZP_02480018.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 7894] gi|167909331|ref|ZP_02496422.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 112] gi|167917362|ref|ZP_02504453.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei BCC215] gi|217420312|ref|ZP_03451818.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 576] gi|226193722|ref|ZP_03789325.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei Pakistan 9] gi|237810663|ref|YP_002895114.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia pseudomallei MSHR346] gi|242314835|ref|ZP_04813851.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 1106b] gi|254175122|ref|ZP_04881783.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei ATCC 10399] gi|254181969|ref|ZP_04888566.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 1655] gi|254187898|ref|ZP_04894410.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei Pasteur 52237] gi|254196234|ref|ZP_04902658.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei S13] gi|254201799|ref|ZP_04908163.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei FMH] gi|254207127|ref|ZP_04913478.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei JHU] gi|254260167|ref|ZP_04951221.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia pseudomallei 1710a] gi|254295981|ref|ZP_04963438.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 406e] gi|52208480|emb|CAH34415.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia pseudomallei K96243] gi|52427966|gb|AAU48559.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei ATCC 23344] gi|76578424|gb|ABA47899.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia pseudomallei 1710b] gi|121228232|gb|ABM50750.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei SAVP1] gi|124292709|gb|ABN01978.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia mallei NCTC 10229] gi|126218396|gb|ABN81902.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia pseudomallei 668] gi|126228559|gb|ABN92099.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 1106a] gi|126242788|gb|ABO05881.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia mallei NCTC 10247] gi|134249144|gb|EBA49226.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia pseudomallei 305] gi|147747693|gb|EDK54769.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei FMH] gi|147752669|gb|EDK59735.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei JHU] gi|157805622|gb|EDO82792.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 406e] gi|157935578|gb|EDO91248.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei Pasteur 52237] gi|160696167|gb|EDP86137.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia mallei ATCC 10399] gi|169652977|gb|EDS85670.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei S13] gi|184212507|gb|EDU09550.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 1655] gi|217397616|gb|EEC37632.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 576] gi|225934300|gb|EEH30284.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei Pakistan 9] gi|237506192|gb|ACQ98510.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia pseudomallei MSHR346] gi|238521529|gb|EEP84980.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia mallei GB8 horse 4] gi|242138074|gb|EES24476.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei 1106b] gi|243062316|gb|EES44502.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia mallei PRL-20] gi|254218856|gb|EET08240.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Burkholderia pseudomallei 1710a] Length = 451 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD+ +RR +++L AG++VV + +A + + ++++DI +P G+E Sbjct: 6 QVIYIEDDELVRRASVQSLQLAGFDVVGFGSVEAAEKAIVGDATGVIVSDIRLPGASGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L V R L Sbjct: 66 LLAQCRERTPDVPVVLVTGHGDISMAVQAMRDGAYDFIEKPFAAERLTETVRRAL 120 >gi|330505442|ref|YP_004382311.1| two-component system sensor histidine kinase/response regulator [Pseudomonas mendocina NK-01] gi|328919728|gb|AEB60559.1| two-component system sensor histidine kinase/response regulator, putative [Pseudomonas mendocina NK-01] Length = 122 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + L AGY+V+ +G A K+ L+++D+ MP MD Sbjct: 1 MGKTVLIVDDSASIRQVVSITLKGAGYDVIEGCDGKDALTKLDGRKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI + +L P K V+ +T A A + A + KPF ++N V++L Sbjct: 61 GITFLKNVKQL-PAYKFTPVIMLTTEAGEAKKDEGRAAGAKAWVVKPFQPAQMLNAVSKL 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|324992956|gb|EGC24876.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995736|gb|EGC27648.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325689751|gb|EGD31755.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 240 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 + NG A+ K +E P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 27 IAQAENGIEAWQKFQENPADILLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGY 81 >gi|325972397|ref|YP_004248588.1| response regulator receiver modulated metal dependent phosphohydrolase [Spirochaeta sp. Buddy] gi|324027635|gb|ADY14394.1| response regulator receiver modulated metal dependent phosphohydrolase [Spirochaeta sp. Buddy] Length = 341 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE 58 M + I+ +DD +R+ L L K GY V +C G +R EE L+L DI MP Sbjct: 1 MTRHIVTTDDDPAIRKILQIMLRKEGYMVTACEEGNGLLQLLRQSEESIDLILLDIKMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL P + ++ IT F + + + L+KP H L V R+L Sbjct: 61 FSGFELLEMIRASYPQIPIVMITAFNDLDTGMKAMRMGASDYLAKPVHREALFATVKRVL 120 >gi|306820129|ref|ZP_07453777.1| sporulation initiation phosphotransferase F [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551907|gb|EFM39850.1| sporulation initiation phosphotransferase F [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 120 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + ILL +D MR L L K GYEV+ NG A +K +E L++ DI MPEM Sbjct: 1 MAKGILLVDDAAFMRMMLKDILVKNGYEVLGEAENGLKAIEKYKELNPDLVIMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ + +++ + V+ + A+ ++ + KPF ++ V +++ Sbjct: 61 DGIDAVKEIKKINANATVIMCSAMGQQAMVIEAIQSGAKDFIVKPFQADRILEAVKKVI 119 >gi|288959451|ref|YP_003449792.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288911759|dbj|BAI73248.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 240 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 1/114 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++I + ED+ D+RR + L GYEV +G A +R + L L D+ +P+MDG Sbjct: 4 KKRIYVIEDEADIRRLVADILEGYGYEVSGWASGREALAAIRRQAPDLCLVDLGLPDMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + L R E D V+ ++G + + KPF R+LV VN Sbjct: 64 LTLVRELWE-DVRFGVIILSGRGGTSDRVLGLELGADDYVVKPFEPRELVARVN 116 >gi|283457122|ref|YP_003361686.1| response regulator [Rothia mucilaginosa DY-18] gi|283133101|dbj|BAI63866.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 247 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L+ +D++ ++ + L G+EV S +G SA R+ +L+ DI+MP DG+E Sbjct: 24 RALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMPGFDGLE 83 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + P++ +F+T +V + A ++KPF + +++ ++RL+ Sbjct: 84 LLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLV 138 >gi|163753675|ref|ZP_02160798.1| two-component system response regulator [Kordia algicida OT-1] gi|161325889|gb|EDP97215.1| two-component system response regulator [Kordia algicida OT-1] Length = 238 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 6/87 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD------KVREEPFSLLLTDIV 55 + K+LLAEDD D L + L +EV+ NG A++ E F + + D++ Sbjct: 3 HTKVLLAEDDYDFGSILKQYLMIHQFEVIWAKNGQEAFEFFTADEHQHENAFDICVFDVM 62 Query: 56 MPEMDGIELARRATELDPDLKVMFITG 82 MP++DG LA + + +P++ +F+T Sbjct: 63 MPKLDGFSLAEKVIQHNPEVPFIFLTA 89 >gi|78356407|ref|YP_387856.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218812|gb|ABB38161.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 974 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ RR +I AL K G++ + NGA A +K + + + D+ MP MDG++ Sbjct: 719 RILLAEDNALNRRTMILALKKLGHQADAVQNGAEAVEKAALKRYDCIFMDVQMPVMDGLD 778 Query: 64 LARRATELDPDLKV----MFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 R PD + I A AL D A + LSKP L L + + Sbjct: 779 ATRAIRGFTPDTAATAPDVHIIALTAHALAGDKERFVQAGMSSYLSKPVRLEALKKHLVQ 838 Query: 117 L 117 L Sbjct: 839 L 839 >gi|330950929|gb|EGH51189.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 245 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|329903112|ref|ZP_08273370.1| response regulator receiver protein [Oxalobacteraceae bacterium IMCC9480] gi|327548486|gb|EGF33156.1| response regulator receiver protein [Oxalobacteraceae bacterium IMCC9480] Length = 122 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ EDD R+ L+ L K +++ ++G A +R L+LTDI+MP MDG+E Sbjct: 3 HILVVEDDIQFRQMLVHMLQKDQHQITMASDGREAMQLLRNLQPDLILTDILMPHMDGVE 62 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLLT 119 + ++ + ++ ++G + N +S + K VL+KPF DL + +L Sbjct: 63 IIMALSQQSNTIPIIAMSGGRRAISSEFNLESASLLGVKAVLAKPFSHADLRRVIGEMLA 122 >gi|313887446|ref|ZP_07821135.1| PglZ domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923088|gb|EFR33908.1| PglZ domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 514 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D+ D+ R I L + GY+V C +GA A D ++E+ + L+ D MP + G+E Sbjct: 5 QILWVDDEIDLLRPHIIFLEQHGYQVTPCVSGADALDLLQEQAYDLVFLDEQMPGLSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R L P L V+ +T L ++ + + A L KP + L+ + ++L Sbjct: 65 TLARIAPLYPYLPVVMVTKSEEEHLMNEAISRQIADYLIKPVNPHQLLLSLKKVL 119 >gi|303325765|ref|ZP_07356208.1| transcriptional regulatory protein ZraR [Desulfovibrio sp. 3_1_syn3] gi|302863681|gb|EFL86612.1| transcriptional regulatory protein ZraR [Desulfovibrio sp. 3_1_syn3] Length = 466 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 52/106 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD R L L + GY V +G A R++PF L+L D+ MP+ G+E Sbjct: 4 ILVADDDATHREVLRTLLEEWGYAVREAVDGEHAVALCRKQPFDLVLMDVRMPKKSGLEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P + V+ +T F+ VA ++ L+KP L Sbjct: 64 LKEIKVHNPAVPVLIMTAFSEVAAAVEAIKSGAYDYLTKPLDFEKL 109 >gi|296167899|ref|ZP_06850080.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896957|gb|EFG76582.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1282 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ DMR L + L A +E + +G SA R ++TD++MP +DG EL Sbjct: 609 VLIADDNADMRHHLDRVL-SAHFETIVAADGESALAAARNLRPDAIVTDVMMPGIDGFEL 667 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A DP+L V+ ++ A + A L KPF R+LV+ V L+ Sbjct: 668 V-AAVRTDPELAATPVLMLSARAGAEAVDEGYAGGADDYLPKPFRSRELVDRVKSRLS 724 >gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 259 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L YE V NNG D+ E F +L D+++P+++G+E Sbjct: 24 KILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLMLPDLNGLE 83 Query: 64 LARRATE 70 +ARR + Sbjct: 84 IARRVRQ 90 >gi|297568726|ref|YP_003690070.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924641|gb|ADH85451.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 703 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + ILL ED+ + L + GY V S + + A E+P LLLTD+V+PEM G Sbjct: 584 ETILLVEDEKAILTMAETILTRLGYRVFSAAHPSEALQIAGEQPEIDLLLTDLVLPEMYG 643 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAP-KNAKVLSKPFHLRDLVNEVNRLLT 119 LA + P+L+ ++++G+ + + + + KPF + +L +V LT Sbjct: 644 HLLAAQLQTQRPELRCLYMSGYLSATVADQVKLDLEQVNFIQKPFSMEELAAKVRTALT 702 >gi|255948010|ref|XP_002564772.1| Pc22g07510 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591789|emb|CAP98039.1| Pc22g07510 [Penicillium chrysogenum Wisconsin 54-1255] Length = 649 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+ILL ED+ RR + + L G+ + +NG A + R+ PF +L D MP MDG Sbjct: 518 QRILLVEDNVINRRIISRKLSTLGFNMSVASNGQEAVEANRDNPFDCILMDQQMPVMDGN 577 Query: 63 ELARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+ +++ + + ++ +T A + ++ KP+ +LV ++N LL Sbjct: 578 RAAKAIRDIEKETGGHVPILGVTANVRDAQQEEMIDAGMDDIIYKPYGTHELVEKINHLL 637 Query: 119 T 119 + Sbjct: 638 S 638 >gi|168702193|ref|ZP_02734470.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 823 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + ILL ED+D +R L GY V+ +GA A R + L+LTD+VMP Sbjct: 703 ETILLVEDEDGVRALSRCILTACGYTVLEACDGAEALRLARAQGPSIQLVLTDVVMPGPS 762 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A P KV+F++G+ A+ L KPF L +V +L Sbjct: 763 GREVAEEIRGRHPATKVLFVSGYTDDAVVTRGVFQDQMHFLHKPFSPDALALKVREVL 820 >gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] Length = 806 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 8/122 (6%) Query: 3 QKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+AED+ + + LIKA+ K + NG A++ V E F L+ DI MP MDG Sbjct: 689 KKILIAEDNS-INQVLIKAMMAKTNAVITIVENGQLAFEAVGSERFDLVFMDIHMPIMDG 747 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS---KPFHLRDLVNEVNRLL 118 I+ +R + P+L V+ +T A ++ D +S KP + DL ++ L Sbjct: 748 IQSNQRIKAMQPNLPVIALT---ANVMDKDVQHYYQQGFISHVAKPVDINDLFGKLKHLF 804 Query: 119 TI 120 I Sbjct: 805 KI 806 >gi|83858328|ref|ZP_00951850.1| Two Component Transcriptional Regulator, Fis family protein [Oceanicaulis alexandrii HTCC2633] gi|83853151|gb|EAP91003.1| Two Component Transcriptional Regulator, Fis family protein [Oceanicaulis alexandrii HTCC2633] Length = 423 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ EDD+ +R + KAL +AG+EV + + +A +++ +LL D+++ Sbjct: 1 MAHRVLILEDDESLRLVIAKALSRAGFEVRATASTDAALERLVRREVDVLLADVLLGRES 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ T + PD+ V+ ++ ++ + L KPF L D+V + R L Sbjct: 61 FLDRLDEVTRVRPDIPVIIMSAQTTARTAIEAGKAGVFEYLPKPFDLNDMVAVIKRSL 118 >gi|332527370|ref|ZP_08403426.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus JA2] gi|332111779|gb|EGJ11759.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus JA2] Length = 1201 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LLAED++ ++ ++ L + G V +NG +A ++VRE + L+L D+ MPEMDG+ Sbjct: 944 RRVLLAEDNELNQQVAVELLSELGLVVDVVDNGRTAVERVRERRYDLVLMDMQMPEMDGL 1003 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A RA P + I A A+ D +A + ++KP R L +++ L Sbjct: 1004 S-ATRAIRALPGAARLPIVAMTANAMVDDVQRCLSAGMDGHIAKPIDPRRLASQLQGCL 1061 >gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 10/114 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+ILL EDD ++ R + L K GY V G + + L+L D +MPEMD Sbjct: 1 MEQQILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSYDLILVDWMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK----VLSKPFHLRDL 110 G+ + L D+ ++ I+ A + +S+ + L+KPF L +L Sbjct: 61 GLSMIEH-IRLQSDVPIIMIS-----AKSNESDKVTGLQDADDYLAKPFSLEEL 108 >gi|302186956|ref|ZP_07263629.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 245 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|253570812|ref|ZP_04848220.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 1_1_6] gi|251839761|gb|EES67844.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 1_1_6] Length = 1196 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ ++R +LI++ +V + +N SA + R++ S++++D++MP+MDG Sbjct: 1054 KTILIVEDEKELREYLIESFTGTFKKVYAADNAISALETCRKKQPSIIVSDVMMPQMDGF 1113 Query: 63 ELARRATELDPDLKVMFI 80 EL R ++ D+++ I Sbjct: 1114 ELCR---QIKNDIRISHI 1128 >gi|254512491|ref|ZP_05124558.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221536202|gb|EEE39190.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 763 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 20/121 (16%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDI---------- 54 +LL ED+ +R F +AL GY V+ SA D +R LL D+ Sbjct: 647 VLLVEDEAPVRAFATRALRLKGYTVLEAE---SAEDALR------LLDDLNLVVDVFVTD 697 Query: 55 -VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 VMP MDG R+A + PD++V+F++G+ A +N+ L KPF L L Sbjct: 698 VVMPGMDGPTWVRQAMKTRPDVRVVFMSGYTEGAFGETGPEIENSAFLPKPFSLTQLTEA 757 Query: 114 V 114 V Sbjct: 758 V 758 >gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] Length = 235 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ +R L++ L GY ++ NG A R++ ++ DI+MPE+DG + Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61 Query: 64 LARRATELDPDLKVMFITG 82 + R + D ++F++ Sbjct: 62 VCREIRKHDWQTPIIFLSA 80 >gi|189425217|ref|YP_001952394.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189421476|gb|ACD95874.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 453 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 50/107 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++++R L L K GY + G A K+ + +L DI MPEMDG E Sbjct: 6 ILIIDDEENLRHMLSVMLRKQGYHADTAAGGEEALAKLSGHAYDYILCDIRMPEMDGREF 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 R+A ++ +T + AV +SKPF ++V Sbjct: 66 LRQAVSSGVTAPIVMMTAYGAVDTAVACMQEGAYDFISKPFKRDEIV 112 >gi|88602277|ref|YP_502455.1| response regulator receiver sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] gi|88187739|gb|ABD40736.1| response regulator receiver sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] Length = 433 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED L L KAGY+V NG A +++++E +L+LTD++MPEM+G EL Sbjct: 11 ILIAEDSKTQAEILRHLLDKAGYKVRVAYNGRQALEEIQKELPTLVLTDVMMPEMNGYEL 70 Query: 65 ARRATELDPDLK 76 + + DP+ + Sbjct: 71 C-KTLKADPETR 81 >gi|332973164|gb|EGK11099.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 262 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 5 ILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ R+ L K L + YE+++ +G +A++ R LL+TDI MPEM+G Sbjct: 6 ILIVDDEQRTRQGLKKTLDQWAVGNYEILTAEDGKAAWEIFRSREVHLLITDICMPEMNG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++L + + V+ ++G+ ++ L KP + L+ V + L IK Sbjct: 66 LQLLKTLRTNEQKTVVLILSGYPDFEYAQEAIRLGVVNYLLKPTSKKKLIEAVEQALEIK 125 >gi|332299635|ref|YP_004441556.1| response regulator receiver protein [Porphyromonas asaccharolytica DSM 20707] gi|332176698|gb|AEE12388.1| response regulator receiver protein [Porphyromonas asaccharolytica DSM 20707] Length = 514 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D+ D+ R I L + GY+V C +GA A D ++E+ + L+ D MP + G+E Sbjct: 5 QILWVDDEIDLLRPHIIFLEQHGYQVTPCVSGADALDLLQEQAYDLVFLDEQMPGLSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R L P L V+ +T L ++ + + A L KP + L+ + ++L Sbjct: 65 TLARIAPLYPYLPVVMVTKSEEEHLMNEAISRQIADYLIKPVNPHQLLLSLKKVL 119 >gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii NCTC 11218] Length = 1268 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 8/111 (7%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 ED+ R + L + G +V +G A + ++ FSL+L D+ MP+MDG E RR Sbjct: 931 EDNPTNRLVATELLSQQGATIVEAESGVEALAALDQQEFSLVLMDVQMPDMDGYETTRRI 990 Query: 69 TELD--PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 ++ DL ++ +T A A+ D A NA + ++KPFH+ ++V ++ Sbjct: 991 RQMAHFADLPILAMT---ANAMPEDKVACLNAGMNDHIAKPFHIGEVVEKI 1038 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 ++L+ ED++ R L + G V + + A D + + +PF LL D +P Sbjct: 778 QVLIVEDNNTARLIFDDLLQRLGCHVTAVADAEHALDTIEQADANGQPFDLLFIDWKLPG 837 Query: 59 MDGIELAR 66 MDG+ L + Sbjct: 838 MDGLSLTQ 845 >gi|325108669|ref|YP_004269737.1| Fis family transcriptionel regulator [Planctomyces brasiliensis DSM 5305] gi|324968937|gb|ADY59715.1| two component, sigma54 specific, transcriptional regulator, Fis family [Planctomyces brasiliensis DSM 5305] Length = 462 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%) Query: 6 LLAEDDDDMRRFLIKALG----KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 LL DDD +F+++A+ K GY + A D++RE PF +++ D+ +P+ DG Sbjct: 8 LLVVDDD---KFILEAMADYLRKLGYRTETAATCGEAMDRMREFPFEVVICDVHLPDQDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 +L A++ P+ V+ +TG+ + Sbjct: 65 FQLLEWASKEQPETSVIMLTGYGTI 89 >gi|297579725|ref|ZP_06941652.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae RC385] gi|297535371|gb|EFH74205.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae RC385] Length = 450 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGTSALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + + V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|262190152|ref|ZP_06048435.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae CT 5369-93] gi|262033962|gb|EEY52419.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae CT 5369-93] Length = 450 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGTSALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + + V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|253998522|ref|YP_003050585.1| response regulator receiver protein [Methylovorus sp. SIP3-4] gi|253985201|gb|ACT50058.1| response regulator receiver protein [Methylovorus sp. SIP3-4] Length = 121 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + +L AGY+VV +G +K R++ L+LTD MP MD Sbjct: 1 MAKTILAVDDSGSLRQMVAFSLTAAGYQVVQAVDGQDGLNKARDQVVDLVLTDQNMPNMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + R + ++ +T ++ + A L KPF + L++ V +++ Sbjct: 61 GLTLIKSLRGMSSYQKVPILMLTTESSDEMKAKGRAAGANGWLVKPFDPKRLIDVVQKVI 120 >gi|255952653|ref|XP_002567079.1| Pc21g00040 [Penicillium chrysogenum Wisconsin 54-1255] gi|211588789|emb|CAP94901.1| Pc21g00040 [Penicillium chrysogenum Wisconsin 54-1255] Length = 607 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ EDD R L + L G+E++ NG A D + +L D MP MDG Sbjct: 479 RSILVVEDDPINRAILSRKLRSQGFEIIEAKNGLEALDAFQNRRPDCILMDQEMPFMDGN 538 Query: 63 ELARRATELD----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++R EL+ + ++ +T A +A + V++KPFH ++V ++ + + Sbjct: 539 AASKRIRELERGNNNHVPILGMTANARLAQKSEMFEAGMDDVINKPFHTEEIVAKICQFV 598 Query: 119 TIK 121 IK Sbjct: 599 PIK 601 >gi|149197636|ref|ZP_01874686.1| two component transcriptional regulator, winged helix family protein [Lentisphaera araneosa HTCC2155] gi|149139206|gb|EDM27609.1| two component transcriptional regulator, winged helix family protein [Lentisphaera araneosa HTCC2155] Length = 117 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL +D+ + + L + +E+ S ++ A + + L+++D+VMP+++G+ Sbjct: 2 RKILLVDDEPTVLKLTTMILERQNFEITSFDSPLKALEATDPNDYDLIISDLVMPKLNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + PD K + I+ A +A +++ + + LSKPF +LV+ +N +L Sbjct: 62 KFLKEIRNQAPDSKAIIISASADIARLQETDE-TDTQYLSKPFKFDELVDLINSVL 116 >gi|189424716|ref|YP_001951893.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189420975|gb|ACD95373.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 456 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 58/110 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ MR F+ L + GYEV++ + +A ++ L+++D+ MP + Sbjct: 1 MRTRILVVDDELSMREFISILLEREGYEVLTAADATTALTRLAASDIDLVISDVQMPGLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+EL R E PD V+ IT F+ ++ L+KPF + ++ Sbjct: 61 GLELLARIKENKPDTAVLLITAFSTAEQAVEAMKLGAYDYLAKPFKVDEI 110 >gi|49474264|ref|YP_032306.1| response regulator [Bartonella quintana str. Toulouse] gi|49239768|emb|CAF26155.1| Response regulator [Bartonella quintana str. Toulouse] Length = 121 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++K+++ ED++ +M+ F L++A +GYE V NG A D R SL+L DI +P Sbjct: 1 MSKKVMIVEDNELNMKLFRDLVEA---SGYETVETRNGLMALDLARSSMPSLILVDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEV 114 E+ GI++ ++ E D LK + + A A+ D A + +SKP + + V Sbjct: 58 EVSGIDVIKQLKE-DEVLKSVPVVAVTAFAMKGDEERIRASGCEEYMSKPISVPHFIAMV 116 Query: 115 NRLL 118 R L Sbjct: 117 KRFL 120 >gi|148263943|ref|YP_001230649.1| diguanylate cyclase [Geobacter uraniireducens Rf4] gi|146397443|gb|ABQ26076.1| response regulator receiver modulated diguanylate cyclase [Geobacter uraniireducens Rf4] Length = 462 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 47/82 (57%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD R L + G+ V +G A V+ + L++TD+VMP++ G+ Sbjct: 2 ERILVVEDDSFFREVFADLLIEDGFHVDVAASGEQALVMVQNREYQLVVTDLVMPDITGL 61 Query: 63 ELARRATELDPDLKVMFITGFA 84 ++ + +LDP + V+ +TG A Sbjct: 62 DILSKVKQLDPTIDVIMVTGHA 83 >gi|148264420|ref|YP_001231126.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter uraniireducens Rf4] gi|146397920|gb|ABQ26553.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter uraniireducens Rf4] Length = 348 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 52/107 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+A+D++ +R L LGK GY +N ++ EP + DI+MP Sbjct: 1 MKEHILIADDEEMIRDLLCATLGKEGYICHQASNVEEGLAIMKTEPIDIAFLDIMMPGRS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 G+EL + + L P++ V+ +T + ++KPF+L Sbjct: 61 GVELLKESKTLKPEIIVLMVTAMNDMDTALSCIHLGAEDYITKPFNL 107 >gi|254181711|ref|ZP_04888308.1| response regulator/HD domain protein [Burkholderia pseudomallei 1655] gi|184212249|gb|EDU09292.1| response regulator/HD domain protein [Burkholderia pseudomallei 1655] Length = 481 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV+ +GA+A D + L+++D+ MP M G E Sbjct: 44 ILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAVGEVDLIISDMRMPCMTGAEF 103 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 104 LARAQTLHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVRQAL 158 >gi|330873059|gb|EGH07208.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 245 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAEFRRAFNEEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L + R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|329934222|ref|ZP_08284301.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305818|gb|EGG49673.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 255 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD +RR + AL + GY V + +G + + RE LLL D+++P +DGI L Sbjct: 9 ILLVEDDTVIRRSVTMALERYGYRVTAAADGLTGLELFREGRHDLLLLDVMLPGLDGIGL 68 Query: 65 AR--RATELDPDL 75 R R T +DP L Sbjct: 69 CRRIRETSMDPVL 81 >gi|331269273|ref|YP_004395765.1| response regulator receiver protein [Clostridium botulinum BKT015925] gi|329125823|gb|AEB75768.1| response regulator receiver protein [Clostridium botulinum BKT015925] Length = 119 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K GYEVV +NG A + + E ++ DI MP+MDGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNGYEVVGEASNGIKAVELYKSEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + DP K++ + + D+ + KPF ++ V + + Sbjct: 63 EAVKEIKAFDPAAKIIMCSAMGQQTMVMDAIKSGAKDFIVKPFQADRVLEAVKKAI 118 >gi|307717820|ref|YP_003873352.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531545|gb|ADN01079.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 366 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 13/127 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL+ EDD FL+K + G+EV ++G A +V E E F L+L DIVMP + G+ Sbjct: 5 RILVVEDDILTLSFLVKLFERRGFEVEGVSSGGEAVRRVEELEAFDLVLLDIVMPGLSGV 64 Query: 63 ELARRATELDP--DLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ E P L V+F+T A A AL+ N + KP +L V Sbjct: 65 EVCELIRERYPMFRLPVLFLTALAQPSEVARALDAGGN-----DYIVKPPQEDELFARVR 119 Query: 116 RLLTIKN 122 L+ +K Sbjct: 120 NLIRLKR 126 >gi|298387105|ref|ZP_06996659.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298260255|gb|EFI03125.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1354 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L + + Y+V + ++G A D ++++ S++L+D+VMP M G Sbjct: 1092 DAKMLIVEDNESIKQML-AGIFETFYQVTTASDGVEALDIIQKDMPSIILSDVVMPRMSG 1150 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T AV N + ++KPF+ L++ N L+ Sbjct: 1151 TELCKQIKTDFNTCHIPVVLLTARTAVEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1209 >gi|258592520|emb|CBE68829.1| putative Response regulator receiver protein [NC10 bacterium 'Dutch sediment'] Length = 218 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 24 KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 +A + + + + +A + +R EPF LL+TD MP M G++L R AT L PDL + +TGF Sbjct: 33 EAWHHISTAADPRTALELLRNEPFDLLITDYRMPGMTGLDLIREATRLQPDLIGILVTGF 92 >gi|289678167|ref|ZP_06499057.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 195 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|283852698|ref|ZP_06369963.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571876|gb|EFC19871.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 832 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 50/106 (47%), Gaps = 4/106 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ R K L + G+ V + +G A D V PF +L DI MP M G+E Sbjct: 710 RVLLAEDNRVSRDITEKLLLRRGHAVTTAADGREALDAVIRHPFDCILMDIQMPGMGGLE 769 Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPF 105 R L DPD +FI A A+ D A LSKP Sbjct: 770 ATRAIRALADPDRAGVFIAAVTAHAMPGDRERFLASGLDDYLSKPL 815 >gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL GY+V ++G A D +R LL+ D++MP MDG Sbjct: 12 RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGFT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR E D+ V+ +T AV + ++KPF L +LV V +L Sbjct: 72 LLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAIL 126 >gi|167901110|ref|ZP_02488315.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia pseudomallei NCTC 13177] Length = 451 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD+ +RR +++L AG++VV + +A + + ++++DI +P G+E Sbjct: 6 QVIYIEDDELVRRASVQSLQLAGFDVVGFGSVEAAEKAIVGDATGVIVSDIRLPGASGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L V R L Sbjct: 66 LLAQCRERTPDVPVVLVTGHGDISMAVQAMRDGAYDFIEKPFAAERLTETVRRAL 120 >gi|31580726|gb|AAP55202.1| response regulator [Xanthomonas axonopodis pv. citri] Length = 464 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 124 >gi|151482|gb|AAA25956.1| pilin [Pseudomonas aeruginosa] gi|347994|gb|AAA20188.1| pilin transcriptional activator [Pseudomonas aeruginosa] Length = 446 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QK L+ +D+ D+R L LG+ + S N A + + EPF L LTD+ +P+ G Sbjct: 3 RQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP----FHLRDLVNEVNRL 117 ++L + + P V IT + ++ + L+KP F LR+LV RL Sbjct: 63 LDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDFDFRLRELVATALRL 122 >gi|327405321|ref|YP_004346159.1| integral membrane sensor hybrid histidine kinase [Fluviicola taffensis DSM 16823] gi|327320829|gb|AEA45321.1| integral membrane sensor hybrid histidine kinase [Fluviicola taffensis DSM 16823] Length = 857 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD DM F + L K + ++ NG+ D +RE ++L+D++MPE DGIEL Sbjct: 614 LLLVEDDADMAAFSMSVL-KEEFNIIHAKNGSEGLDLIRENLPDIVLSDVMMPEKDGIEL 672 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R+ EL L + + A++ + +SKPF +L Sbjct: 673 LHDIRSDELTNHLPFVLFSAKASLESRLEGLQHGADAYVSKPFSPEEL 720 >gi|312888171|ref|ZP_07747753.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311299347|gb|EFQ76434.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 227 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 53/114 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ + R + +L + GY VV +G A+ + F L + D+++P DG L Sbjct: 6 LLLVEDEPFLARVVQDSLEQLGYSVVHAPDGRKAFSLFHNQFFDLCIIDVMLPYTDGFTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + V+F+T A + L KPF L +L +N LL Sbjct: 66 VKQIRSSGSQVPVLFLTAKTATNDLIEGYQSGGNDYLKKPFSLEELFLRINELL 119 >gi|299534773|ref|ZP_07048103.1| chemotaxis protein cheY-like protein [Lysinibacillus fusiformis ZC1] gi|298729861|gb|EFI70406.1| chemotaxis protein cheY-like protein [Lysinibacillus fusiformis ZC1] Length = 120 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++IL+ +D MR + L K G+EVV +G A +K E L+ DI MPEM Sbjct: 1 MSKRILIVDDAAFMRMMIKDILSKNGFEVVGEAADGLQAVEKYNELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + DP V+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGIAALKAIKGTDPSATVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIQKAL 119 >gi|288871310|ref|ZP_06117177.2| two-component response regulator [Clostridium hathewayi DSM 13479] gi|288863921|gb|EFC96219.1| two-component response regulator [Clostridium hathewayi DSM 13479] Length = 411 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 3/86 (3%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++L+ +D++D+RR + + + + G+EV NG A + E ++L+DI MP+MD Sbjct: 3 QLLIVDDEEDIRRGMARGIPWKEWGFEVAGQAENGEEAVRMIGETHPDVVLSDIRMPKMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 GIEL + E +P++K++ ++G+ V Sbjct: 63 GIELMQYLHENNPEIKIIILSGYNDV 88 >gi|229826750|ref|ZP_04452819.1| hypothetical protein GCWU000182_02126 [Abiotrophia defectiva ATCC 49176] gi|229789620|gb|EEP25734.1| hypothetical protein GCWU000182_02126 [Abiotrophia defectiva ATCC 49176] Length = 230 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 20/125 (16%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI +A+D+ ++R L K L AG+EV NG + DK+ E+ +++ D++MP +DG Sbjct: 3 KIFIADDEKNIRDLLGKFLADAGHEVKLFENGNALLDKLEEDTPDIVVLDVMMPGIDGFT 62 Query: 64 LARRATELDPDLKVM----------FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 + + PD+ ++ F+TGF A + L+KPF L + Sbjct: 63 ACSKIRKSHPDITILLLTARDTDADFMTGFTAGCDD----------YLTKPFSPLKLTLK 112 Query: 114 VNRLL 118 VN +L Sbjct: 113 VNAIL 117 >gi|228469887|ref|ZP_04054826.1| response regulator [Porphyromonas uenonis 60-3] gi|228308522|gb|EEK17310.1| response regulator [Porphyromonas uenonis 60-3] Length = 514 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D+ D+ R I L + GYEV C +GA A D + E + L+ D MP + G+E Sbjct: 5 QILWVDDEIDLLRPHIIFLEQHGYEVTPCVSGADALDLLEERSYDLVFLDEQMPGLSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R L P L V+ +T L ++ + + A L KP + L+ + ++L Sbjct: 65 TLARIAPLYPYLPVVMVTKSEEEHLMNEAISRQIADYLIKPVNPHQLLLSLKKVL 119 >gi|209550299|ref|YP_002282216.1| Fis family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536055|gb|ACI55990.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 448 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 55/112 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+RR + L AG+ V + +A + + ++TDI MPE+DG++L Sbjct: 7 VALIDDDKDLRRATAQTLELAGFSVFAYEGAKAALADLSADFAGPIVTDIRMPEIDGLQL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +D DL V+ +TG + + + ++KPF LV V R Sbjct: 67 FAMLKGMDADLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSVRR 118 >gi|125717947|ref|YP_001035080.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125497864|gb|ABN44530.1| Two-component response transcriptional regulator (CheY-like receiver and AraC-type DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|327474275|gb|EGF19682.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 244 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 + NG A+ K +E P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 31 IAQAENGIEAWQKFQENPADILLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGY 85 >gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 791 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q +L+ +DD D R L + L AG++V NG A + PF ++ D++MPEMDG Sbjct: 661 TQLVLVVDDDHDSRAMLRRMLEGAGWKVYEAANGREALGALHSRPFGAMILDLMMPEMDG 720 Query: 62 IELARRATELDP--DLKVMFITG 82 E EL+ DL ++ ++ Sbjct: 721 FETIAALQELEQFRDLPIIVVSA 743 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 K+L+ +DD ++ L + L + G+ V+S +G + VR + +L D+++P ++G Sbjct: 540 KVLIIDDDRNVHHLLSRTLKREGWSVLSAFDGENGLAMVRNHHPTAILLDVLLPGHVNGW 599 Query: 63 EL 64 E+ Sbjct: 600 EI 601 >gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1236 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 8/123 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D + PF +L DI MP MDG+ Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 ARRATE-LDPDLKVMFITGFAAVALNPDSN----APKNAKVLSKPFHLRDLVNEVNRLLT 119 AR E D V+ I A A++ D A NA + +KP L +L ++ + Sbjct: 1174 ARALRERFSAD--VLPIIAMTAHAMSGDREKSLAAGMNAHI-TKPIVLTELFETLSHWIK 1230 Query: 120 IKN 122 KN Sbjct: 1231 HKN 1233 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK------VMFI 80 +EV + +GA A K+ +P LLL D +MPEMDG ++ + + + ++ + Sbjct: 991 FEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGGDVISAIDTMVAEGRIAKRPIIIMM 1050 Query: 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 T +AA L + ++ VL KPF L +E+ Sbjct: 1051 TAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10] gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516] gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F] gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola] gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003] gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10] gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516] gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F] gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola] gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004] gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038] gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003] gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 235 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ +R L++ L GY ++ NG A R++ ++ DI+MPE+DG + Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61 Query: 64 LARRATELDPDLKVMFITG 82 + R + D ++F++ Sbjct: 62 VCREIRKHDWQTPIIFLSA 80 >gi|327539865|gb|EGF26468.1| response regulator receiver domain-containing protein [Rhodopirellula baltica WH47] Length = 378 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 MN++ILL +DD + L + L +EV +C +G A +++ +PFS+++ D+ MP M Sbjct: 1 MNERILLVDDDYSLLNTLKRNLS-FDFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGM 59 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVN 115 +G E+ ++A + P+ + +TG + ++ N + + L+KP + D+ +N Sbjct: 60 EGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAIN 116 >gi|325103026|ref|YP_004272680.1| response regulator receiver protein [Pedobacter saltans DSM 12145] gi|324971874|gb|ADY50858.1| response regulator receiver protein [Pedobacter saltans DSM 12145] Length = 134 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 12/128 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD + L L K+G +V +NG A +K+ L+L DI+MPE+DG Sbjct: 8 NKKILIVDDDPSIVMSLEFLLQKSGSKVFIASNGREAMEKIDAHQPDLVLLDIMMPEVDG 67 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEV 114 E+ + P +KV+FI+ A + D + K + KPF R L+ ++ Sbjct: 68 YEVCEYVKKNYAIPAIKVIFIS-----AKSKDEDIKKAYTKGADLFVIKPFSTRRLLEKI 122 Query: 115 NRLLTIKN 122 LL KN Sbjct: 123 ASLLKAKN 130 >gi|260430574|ref|ZP_05784547.1| transcriptional activator protein CopR [Citreicella sp. SE45] gi|260418603|gb|EEX11860.1| transcriptional activator protein CopR [Citreicella sp. SE45] Length = 225 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD + +++ L + G+ V ++G A L + D ++P MDG+ Sbjct: 2 KILLAEDDAKIADYIVAGLSENGHSVEHVSDGRDALSYCLYNDCDLAILDRMLPGMDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + L V+F+T V + A L+KPFH +LV ++ ++ K+ Sbjct: 62 VLKALRASQKTLPVLFLTALGQVDDRVEGLAAGGDDYLTKPFHFSELVARIDAIVRRKS 120 >gi|255326451|ref|ZP_05367533.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC 25296] gi|255296491|gb|EET75826.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC 25296] Length = 247 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L+ +D++ ++ + L G+EV S +G SA R+ +L+ DI+MP DG+E Sbjct: 24 RALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMPGFDGLE 83 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + P++ +F+T +V + A ++KPF + +++ ++RL+ Sbjct: 84 LLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLV 138 >gi|237797703|ref|ZP_04586164.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020553|gb|EGI00610.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae pv. oryzae str. 1_6] Length = 394 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQTFEQETPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAVAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|229916202|ref|YP_002884848.1| response regulator receiver modulated CheW protein [Exiguobacterium sp. AT1b] gi|229467631|gb|ACQ69403.1| response regulator receiver modulated CheW protein [Exiguobacterium sp. AT1b] Length = 293 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFS--LLLTDIVMPE 58 N+ I +AED + +R ++ L AGY NNG A D +E LL+TDI MP+ Sbjct: 172 NKNIWIAEDSEMLRTLILDTLDDAGYFNTTVFNNGKEALDAFEQEGVECDLLITDIEMPQ 231 Query: 59 MDGIELARRATELD 72 MDG+ L +R E+D Sbjct: 232 MDGLHLTKRLREMD 245 >gi|229541271|ref|ZP_04430331.1| response regulator receiver modulated CheW protein [Bacillus coagulans 36D1] gi|229325691|gb|EEN91366.1| response regulator receiver modulated CheW protein [Bacillus coagulans 36D1] Length = 301 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 11/95 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYD---------KVREEPFSLLL 51 N++I++AED +R L L +AGYE ++ NG AY+ K ++ L++ Sbjct: 173 NKRIVIAEDSGLLRELLRDTLLEAGYEQIAFFENGKDAYEYLSGIAESGKEMKDEVQLVI 232 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 TDI MP+MDG L ++ E DP LKV+ + F+++ Sbjct: 233 TDIEMPQMDGHHLTKKIKE-DPALKVLPVIIFSSL 266 >gi|224538757|ref|ZP_03679296.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM 14838] gi|224519649|gb|EEF88754.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM 14838] Length = 1434 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++++R F+ L K Y V NG DK E ++++DI+MPEMDGIE Sbjct: 1170 RILIIEDNEELRHFICNVLSK-DYVVFEAENGKQGLDKALAEMPDIVISDIMMPEMDGIE 1228 Query: 64 LARR 67 +R Sbjct: 1229 FLKR 1232 >gi|254411772|ref|ZP_05025548.1| hypothetical protein MC7420_4738 [Microcoleus chthonoplastes PCC 7420] gi|196181494|gb|EDX76482.1| hypothetical protein MC7420_4738 [Microcoleus chthonoplastes PCC 7420] Length = 119 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ D L + L GY V NG +A+++ + L+L+DI +P++DGI Sbjct: 2 KILVVEDNLDFAEALFECLTFEGYIVDVVTNGVAAWERAVITDYDLVLSDIELPKLDGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L ++ L + +TG +N K KPF ++L++ + Sbjct: 62 LCKKLRYHGYHLPIFLMTGLERDLPIILTNEAKANGYFFKPFSFQELLDRIQ 113 >gi|254413172|ref|ZP_05026943.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179792|gb|EDX74785.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 467 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ FL L K+G++V+ +G +A +V L+L D++MP MDG E+ Sbjct: 10 LLIVEDNPTNLSFLFNYLTKSGFKVLVATDGKTAIQRVEAAQPDLILLDVMMPGMDGFEV 69 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +R ++ D+ V+F+T + ++KP ++V+ + LT++N Sbjct: 70 CKRLKSSPSMRDIPVIFMTALSDTLNKVHGFEIGAVDYITKPIQPEEVVSRIQTHLTLRN 129 >gi|160936379|ref|ZP_02083748.1| hypothetical protein CLOBOL_01271 [Clostridium bolteae ATCC BAA-613] gi|158440662|gb|EDP18400.1| hypothetical protein CLOBOL_01271 [Clostridium bolteae ATCC BAA-613] Length = 545 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +I+L +D++++R+ +I+ + AG+ VV NG A +KV L+LTDI MP MD Sbjct: 5 RIILVDDEEEVRQSIIRKIDWTGAGFCVVGDAENGEEALEKVEALEPDLILTDIRMPFMD 64 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+ LA R + P +K++ +G+ Sbjct: 65 GLSLAERVRQKYPSVKIVIFSGY 87 >gi|150376954|ref|YP_001313550.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150031501|gb|ABR63617.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 131 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM-DGI 62 ILLA+D+ + L AG+ V + ++GA A + ++ ++TDI + DG Sbjct: 6 ILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIELLKSGAAIDGVVTDIRFCQPPDGW 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++AR A E+DP++ +++I+G A AL SN ++ +L KPF L+ V++LL Sbjct: 66 QVARVAREIDPNMPIVYISGHA--ALEWASNGVPDSIILEKPFTSAQLITAVSQLL 119 >gi|53718347|ref|YP_107333.1| putative two-component response regulator protein [Burkholderia pseudomallei K96243] gi|53724711|ref|YP_102090.1| response regulator [Burkholderia mallei ATCC 23344] gi|52208761|emb|CAH34697.1| putative two-component response regulator protein [Burkholderia pseudomallei K96243] gi|52428134|gb|AAU48727.1| response regulator [Burkholderia mallei ATCC 23344] Length = 439 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV+ +GA+A D + L+++D+ MP M G E Sbjct: 2 ILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAVGEVDLIISDMRMPCMTGAEF 61 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 62 LARAQTLHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVRQAL 116 >gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74] gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1407 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + L++ L K GY NNG ++ E F L+L DI MPEMDG+E Sbjct: 1283 QILIAEDNPINVKLLVRVLNKLGYSPTVANNGQEVLSRL-HEGFDLILMDIQMPEMDGLE 1341 Query: 64 LAR 66 R Sbjct: 1342 ATR 1344 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 10/78 (12%) Query: 46 PFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS--- 102 PF L++ D MPEMDGIELA P + ++ ++ D K+A + S Sbjct: 1184 PFDLIIIDQQMPEMDGIELAGEIKRSYPTIPLILLSWVG------DQRRKKHADLFSGMI 1237 Query: 103 -KPFHLRDLVNEVNRLLT 119 KP H L V + LT Sbjct: 1238 TKPIHYNHLGQSVQQALT 1255 >gi|268317252|ref|YP_003290971.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334786|gb|ACY48583.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 505 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ +R L + L G+ VV + A A + E F ++ TD MPE+ G+E Sbjct: 390 RVLLVDDEPGVRNVLTRLLALHGHTVVQAASAAEALAHLEREAFDIVFTDQGMPEVSGVE 449 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRL 117 LAR+ P L ++ ITG + + A + +L KPF L L + RL Sbjct: 450 LARQIRARYPQLPIVLITG------DTEVRAERGLIDAMLQKPFRLEALAQVIRRL 499 >gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] Length = 232 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ +DD D+ + + L + G++V NG A D + L + DI+MP MDG Sbjct: 3 QHSILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIMMPAMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 IE+ RR E ++ VMF++ + ++KPF + +LV V Sbjct: 63 IEVCRRIRE-QYNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARV 114 >gi|226227420|ref|YP_002761526.1| NtrC family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090611|dbj|BAH39056.1| NtrC family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 459 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 59/113 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ + L + + G++V +G SA + +R E F + L D+VMPE+DG+E Sbjct: 11 RVLIAEDEAHLGAILEQFMTARGFQVRIVRDGKSALELLRSEAFDVALLDVVMPELDGLE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R E +++ ITG + + LSKP+ + ++ V R Sbjct: 71 VLRLVREEPLPPEIIVITGNGTIETAIAALKLGAYDFLSKPYRMAEIEVLVRR 123 >gi|157148189|ref|YP_001455508.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895] gi|157085394|gb|ABV15072.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895] Length = 224 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGQAADHLLHTETYALAVLDINMPGLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF + +L Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFEIEEL 108 >gi|149194691|ref|ZP_01871786.1| two component transcriptional regulator, winged helix family protein [Caminibacter mediatlanticus TB-2] gi|149135114|gb|EDM23595.1| two component transcriptional regulator, winged helix family protein [Caminibacter mediatlanticus TB-2] Length = 215 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 12/120 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD D+ IK + Y+V+S +G A +K EE L++ D+ +P+ DG + Sbjct: 2 KILLVEDDIDLNE-TIKEFLEDKYKVISVFDGEEAVNKAYEEDIDLIILDVKLPKKDGFK 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-----KVLSKPFHLRDLVNEVNRLL 118 +A+ E D ++F+T +LN + K L+KPF L++L+ + +L Sbjct: 61 VAKEIREF-KDTPIIFLT-----SLNTQKDIEKGFLSGGDDYLTKPFSLKELLLRIEAIL 114 >gi|146337401|ref|YP_001202449.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146190207|emb|CAL74199.1| putative sensor histidine kinase with a Response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 716 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +L+ ED+ D+ R +AL + GY +N A +++ + F ++ TD+VMP M G+ Sbjct: 587 VLVVEDNIDVGRSATEALAELGYLTTLVDNAKDALEELIDGASRFDVVFTDVVMPGMTGL 646 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELA L+ ++ V+ +G++ V +N ++L KP+ + +L +++++ + Sbjct: 647 ELAEEIRRLELNIPVVLASGYSHVLAQQGTNG---FELLRKPYSIEELSRVLHKVVPV 701 >gi|324991207|gb|EGC23141.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 244 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 + NG A+ K +E P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 31 IAQAENGIEAWQKFQENPADILLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGY 85 >gi|309790613|ref|ZP_07685167.1| two-component response regulator [Oscillochloris trichoides DG6] gi|308227341|gb|EFO81015.1| two-component response regulator [Oscillochloris trichoides DG6] Length = 121 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+ D++ AL G VV+ +G + ++VR + F ++L D++MP +DG Sbjct: 1 MLLAEDEPDIQMITRMALEDGGCSVVAVGDGQAVLEQVRNQNFDVILLDVMMPRIDGFTA 60 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 R DP DL V+F+T + L A+ + KPF + LV+ +N +L Sbjct: 61 CAR-LHADPQTRDLPVIFLTA-KSQELEVQRGLEMGARGYIVKPFDVFCLVDRINAIL 116 >gi|296447079|ref|ZP_06889012.1| integral membrane sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296255424|gb|EFH02518.1| integral membrane sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 1122 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+A+D + +ALG G+EV++ +NGA D E L++ DI MP ++G Sbjct: 916 KTILVADDTQVHLDLMRRALGGLGFEVMTASNGADCVDIALEHRPDLVMLDIAMPSLNGW 975 Query: 63 ELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ARR L + +M ++ A + + + L KP + ++++ + LL Sbjct: 976 EAARRLRAALGAETPIMMVSANAHELIERRAIDSPHDDFLIKPIEISEMLDRIGNLL 1032 >gi|292491541|ref|YP_003526980.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291580136|gb|ADE14593.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 202 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPEMDGIE 63 I + +DDD MR+ L L G+ V + + A A+ + E PF+ +L D+ MP MDG E Sbjct: 7 IYIVDDDDAMRKSLALLLKGEGFNVKTYAS-AQAFLESEESPFTGCILLDVRMPGMDGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + L V+ ITG A V + + + KPF + L++ +++ L+ N Sbjct: 66 LQELLPQRGIHLPVIMITGHADVPMAVQAMKSGAEDFIEKPFRAQALLDRIHKALSEGN 124 >gi|257487351|ref|ZP_05641392.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626864|ref|ZP_06459818.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649144|ref|ZP_06480487.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. 2250] gi|320322868|gb|EFW78959.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. B076] gi|320329823|gb|EFW85811.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. race 4] gi|330867867|gb|EGH02576.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874323|gb|EGH08472.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. race 4] gi|330988064|gb|EGH86167.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009049|gb|EGH89105.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 245 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L + R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 224 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDDD +R L+ AL Y V NG A RE F L + D+ +P++ G++ Sbjct: 2 KLLLVEDDDALREQLVSALKAQNYVVEEAPNGEEALYLAREYEFDLGIFDLGLPDISGMD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + D V+ +T D A L KPF +L+ +N LL Sbjct: 62 VITSLRDEDIQFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALL 116 >gi|182412949|ref|YP_001818015.1| signal transduction histidine kinase, nitrogen specific, NtrB [Opitutus terrae PB90-1] gi|177840163|gb|ACB74415.1| signal transduction histidine kinase, nitrogen specific, NtrB [Opitutus terrae PB90-1] Length = 989 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 +++L +D+ + L + GY V++ +GA A + R +L++TD+ MP +D Sbjct: 862 EQVLFVDDEASICELATAVLSRHGYRVLTARDGAEAIAQFAPRIADIALVITDLDMPTLD 921 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 G L R L PD K++ +GF A PK A L KPF L+ V L Sbjct: 922 GAALCRVIHTLSPDTKILATSGFVQAA------PPKEAFSGFLPKPFTPEKLLKIVEEAL 975 Query: 119 TIK 121 K Sbjct: 976 PAK 978 >gi|152970273|ref|YP_001335382.1| phosphoglycerate transport activator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894756|ref|YP_002919490.1| phosphoglycerate transport system activator protein [Klebsiella pneumoniae NTUH-K2044] gi|150955122|gb|ABR77152.1| Phosphoglycerate transport: activator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547072|dbj|BAH63423.1| phosphoglycerate transport system activator protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 416 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ILL +DD D+ + L +AGY V +CNN A ++V ++ ++L+D+ MP G Sbjct: 5 NCSILLIDDDADVLDAYTQLLEQAGYHVSACNNPFDAREQVPKDWPGIVLSDVCMPGCSG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I+L + D L ++ ITG V + ++ L KP L+ V+ L Sbjct: 65 IDLMTLFHQDDDLLPILLITGHGDVPMAVEAVKKGAWDFLQKPIDPGKLLTLVDAAL 121 >gi|21243964|ref|NP_643546.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109576|gb|AAM38082.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 484 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 28 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 87 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P V IT F ++ L ++ +SKP + L V L + N Sbjct: 88 TEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 144 >gi|332361244|gb|EGJ39048.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 240 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 + NG A+ K +E P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 27 IAQAENGREAWQKFQENPADILLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGY 81 >gi|330895752|gb|EGH28041.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 187 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|317494534|ref|ZP_07952947.1| nitrogen regulation protein NR(I) [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917464|gb|EFV38810.1| nitrogen regulation protein NR(I) [Enterobacteriaceae bacterium 9_2_54FAA] Length = 473 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG V+ NG D + + +LL+DI MP MDG+ L Sbjct: 8 VWIVDDDSSIRWVLERALTGAGMRCVTFENGNQVLDALATQTPDVLLSDIRMPGMDGLAL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 68 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 122 >gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] Length = 1337 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+DD+R+ L+ L Y +++ +G + +R+E ++++D++MP M GIEL Sbjct: 1089 ILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDEMPDIIISDVLMPNMSGIEL 1147 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + V+ +T AV + ++KPF+ L++ N L+ Sbjct: 1148 CKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISRCNNLI 1203 >gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] Length = 1337 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+DD+R+ L+ L Y +++ +G + +R+E ++++D++MP M GIEL Sbjct: 1089 ILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDEMPDIIISDVLMPNMSGIEL 1147 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + V+ +T AV + ++KPF+ L++ N L+ Sbjct: 1148 CKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISRCNNLI 1203 >gi|271968771|ref|YP_003342967.1| signal transduction histidine kinase-like protein [Streptosporangium roseum DSM 43021] gi|270511946|gb|ACZ90224.1| Signal transduction histidine kinase-like protein [Streptosporangium roseum DSM 43021] Length = 1051 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 5/121 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ D+R +L++ L + V + +GA+A D RE+ L++ D++MP MDG+ Sbjct: 593 ERILVVDDNADLREYLVRLLSPH-WAVTAVADGAAALDAAREQNPDLIIADVMMPGMDGL 651 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLT 119 EL RR DP + M I +A A +S A + L KPF R+L+ V +L Sbjct: 652 ELVRR-LRADPGTRSMSIMLLSARAGKEESLTGLTAGADEYLVKPFSARELLTRVRGVLR 710 Query: 120 I 120 + Sbjct: 711 L 711 >gi|254500603|ref|ZP_05112754.1| Sigma-54 interaction domain family [Labrenzia alexandrii DFL-11] gi|222436674|gb|EEE43353.1| Sigma-54 interaction domain family [Labrenzia alexandrii DFL-11] Length = 460 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+ +DD MR L + + A +E + A + + ++TD+++ D Sbjct: 1 MNTPVLIVDDDPSMRAALRQWIRLADFETIEVATADQAMAVLSPDFSGCIVTDVMLDGDD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ L RR ELD DL V+ ITG V + D+ + KPF DL+ EV R Sbjct: 61 GMTLLRRVGELDGDLPVILITGHGDVPMAVDAMRSGAYDFVEKPFD-PDLIAEVVR 115 >gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 242 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 45/67 (67%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L +AGY+VV+ +G A +K E L++ D+++P+MD Sbjct: 1 MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60 Query: 61 GIELARR 67 GIE+ ++ Sbjct: 61 GIEVCKQ 67 >gi|168701206|ref|ZP_02733483.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 590 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 ++ +LLAED+ +R L GY V +GA A K+ E F LL+TD+ MP Sbjct: 474 SRTVLLAEDEPGVRALARLILQGQGYNVTEAADGAEAL-KLLEGGGAFDLLVTDVRMPGA 532 Query: 60 DGIELARRATELDPDLKVMFITGF 83 DG +A RA EL P ++V+F++GF Sbjct: 533 DGGRVAARARELLPAVRVVFMSGF 556 >gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] Length = 827 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 6/116 (5%) Query: 7 LAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L DD+ M + + K L K G + +C++G A + ++E+ F+L++ D MPEM GIE+ Sbjct: 708 LITDDNRMNQIIAKVFLDKLGAKSHTCSSGQEALNLLKEQSFNLIIIDNHMPEMSGIEVV 767 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 + E D V+F G+ A + + + +A +VL+KP +DL++ ++R L Sbjct: 768 KLIREQGLDDIVIF--GWTADVMQQSTQSFIDAGADEVLAKPLIKKDLIDALSRHL 821 >gi|150020735|ref|YP_001306089.1| response regulator receiver protein [Thermosipho melanesiensis BI429] gi|149793256|gb|ABR30704.1| response regulator receiver protein [Thermosipho melanesiensis BI429] Length = 122 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D + +R+ L KAGYEV +G +K++ L++ DI+MP +DG Sbjct: 2 KKILVVDDSEVLRKITSFNLKKAGYEVFEAFDGIDGLEKIKSIKPDLIILDIMMPRLDGF 61 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + +++ D+ V+ +T + + V++KPF L+ EV RL++ Sbjct: 62 GVLKEKQKIEEIKDIPVIILTAKGGAEDEKIAKSLGANLVMTKPFSPSILLEEVKRLMS 120 >gi|78358273|ref|YP_389722.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220678|gb|ABB40027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1151 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++IL EDDDD + + L G+ V + + + A +RE P + L++TD MPE Sbjct: 1033 DERILFVEDDDDQLHTIPRVLESLGFTVRALKSPSHAAQLLRENPSAYDLVITDFDMPET 1092 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +G+ELA ++ P + V+ ++G VA P ++ KP++ R++++E R Sbjct: 1093 NGLELADEIGDIAPRVPVIMVSG-RDVAAEGALAFPNIKAIVPKPYN-RNILSETIR 1147 >gi|325291379|ref|YP_004267560.1| response regulator receiver protein [Syntrophobotulus glycolicus DSM 8271] gi|324966780|gb|ADY57559.1| response regulator receiver protein [Syntrophobotulus glycolicus DSM 8271] Length = 123 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D +RR L + GYE+ +C +G A + + E LLL D+ MP M+GI+ Sbjct: 3 RILIVDDQVGIRRLLTEVFKDCGYEIETCASGVKALEIMSEFKPDLLLMDVKMPGMNGID 62 Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ E D +KV+ +T + + + KPF + +L ++ +L Sbjct: 63 VLKKIREENDRQIKVIMMTAYGDQEHINTAEELGVVGFIIKPFDINELREQIKDVL 118 >gi|294666981|ref|ZP_06732210.1| two-component system response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603270|gb|EFF46692.1| two-component system response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 464 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 124 >gi|258593669|emb|CBE70010.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 764 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + +LL ED+ + L GY V+S +NGA A + R P +L+LTD VMP M Sbjct: 631 ETLLLVEDNPMVLELGELLLSNLGYTVLSASNGAEALEIFRAHPGIALVLTDAVMPRMGA 690 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L L+ D+KV+ TG+A + + KPF DL V ++ Sbjct: 691 ADLIPALRALNHDVKVLVATGYAPDEIRHSLEGSGVVGYVRKPFSRADLAAAVRTVI 747 >gi|288927611|ref|ZP_06421458.1| DNA-binding response regulator RprY [Prevotella sp. oral taxon 317 str. F0108] gi|288330445|gb|EFC69029.1| DNA-binding response regulator RprY [Prevotella sp. oral taxon 317 str. F0108] Length = 232 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GY C +G + Y + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYMAELCPDGEAGYKAFLKTKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV V +L Sbjct: 66 LAQEIRQANSEIPIVFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVFRVEAIL 120 >gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] Length = 240 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 127 Query: 117 LL 118 +L Sbjct: 128 IL 129 >gi|220919068|ref|YP_002494372.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956922|gb|ACL67306.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 125 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R+ + + L + G++VVS +G A ++R L+L D++MP M+G E Sbjct: 3 RVLIVDDESDIRQAVAEVLAEEGHQVVSAGDGEEALAQIRAFHPELVLLDLMMPVMNGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R A + DPD+ + + +A+ + A + KPF L L+ V R Sbjct: 63 F-RAAQKGDPDISEIPVVILSAMGRD---GAIDADGFIQKPFDLEMLLAMVRR 111 >gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032] gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032] Length = 242 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 45/67 (67%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L +AGY+VV+ +G A +K E L++ D+++P+MD Sbjct: 1 MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60 Query: 61 GIELARR 67 GIE+ ++ Sbjct: 61 GIEVCKQ 67 >gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 224 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 7/114 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ ++ +L + L GY V ++G A D RE+P L++ D+++P +DG+E+ Sbjct: 4 ILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGIDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 ARR D+ ++ +T A+ PD A A L KPF +L+ + Sbjct: 64 ARR-LRAASDVPIIMLTARDAI---PDRVAGLEAGADDYLIKPFAFEELLARIR 113 >gi|56477376|ref|YP_158965.1| putative sensory box histidine kinase/response regulator [Aromatoleum aromaticum EbN1] gi|56313419|emb|CAI08064.1| putative Sensory box histidine kinase/response regulator [Aromatoleum aromaticum EbN1] Length = 513 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 8/107 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 Q +LL EDD ++R + K L G V+ NG A D V SL+L+D+VMP +D Sbjct: 397 QLVLLVEDDPEVRTVVRKQLAALGCSVLEAENGQEAADIVENVAAISLVLSDVVMPGGLD 456 Query: 61 GIELARRATELDPDLKVMFITGFA--AVALNPDSNAPKNAKVLSKPF 105 G L R P L V+ ++G+ A A+ D P +L+KPF Sbjct: 457 GCGLTRFIRRFRPGLPVILMSGYVDRADAVTRDLGVP----LLAKPF 499 >gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 236 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +DD + L + L GY+V +G A + + P L+++D++MPEMDG+ Sbjct: 2 KKILVVDDDKTLLTLLKRYLEHRGYQVEQVCSGTEALEACVKNPPDLVVSDVLMPEMDGL 61 Query: 63 ELARRATELDPDLKVM---FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR + P+ ++M F++ A + + ++ L+KP R+L ++ LL Sbjct: 62 EFCRRLRNI-PNGRLMPFIFLSSKAELEDRINGHSMGADDYLTKPVAPRELEAKIEALL 119 >gi|313200600|ref|YP_004039258.1| response regulator receiver protein [Methylovorus sp. MP688] gi|312439916|gb|ADQ84022.1| response regulator receiver protein [Methylovorus sp. MP688] Length = 123 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + +L AGY+VV +G +K R++ L+LTD MP MD Sbjct: 3 MAKTILAVDDSGSLRQMVAFSLTAAGYQVVQAVDGQDGLNKARDQVVDLVLTDQNMPNMD 62 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + R + ++ +T ++ + A L KPF + L++ V +++ Sbjct: 63 GLTLIKSLRGMSSYQKVPILMLTTESSDEMKAKGRAAGANGWLVKPFDPKRLIDVVQKVI 122 >gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++++ +F+ L GYEV + +G S D E + ++L D+++PE++G+E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR E ++ +T +V L KPF + +L+ + LL Sbjct: 63 VARRLRE-SKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLL 116 >gi|260775692|ref|ZP_05884588.1| response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260608108|gb|EEX34277.1| response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 433 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL +D+ D+ + L + L + Y+VVS NNG A + E S++++D+ MPEMDG E Sbjct: 14 HLLLLDDEPDILKSLTRVL-RFDYQVVSFNNGHDALAHLEEHDVSIIISDMRMPEMDGAE 72 Query: 64 LARRATELDPDLKVMFITGFA 84 +A + P+ +TG++ Sbjct: 73 FLTKARAIRPNSIRFLLTGYS 93 >gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 48/80 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L K GY+VVS ++G A+D +PF ++ D+++P +DGI Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPNLDGI 61 Query: 63 ELARRATELDPDLKVMFITG 82 E+ ++ + + ++ +T Sbjct: 62 EITKKLRQEKIETPILVLTA 81 >gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08] gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07] gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08] gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 43/70 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD Sbjct: 1 MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIMMPKMD 60 Query: 61 GIELARRATE 70 GIE+ R+ E Sbjct: 61 GIEVCRKVRE 70 >gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] Length = 235 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 58/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD D+ L L GY + +G A + +P+ ++ D+++P +DG+ Sbjct: 2 KQILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLMLPNVDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L V+ I+ ++ L+KPF +++L+ + L Sbjct: 62 EICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 117 >gi|170740287|ref|YP_001768942.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194561|gb|ACA16508.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 812 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + +L+ EDD +R + + L + GY+ + +G + ++ + LL+TD+ +P ++G Sbjct: 694 ETVLVVEDDATVRALVTEVLQELGYQALEAPDGPAGLRVLQSDAHVDLLITDVGLPGING 753 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA +A LKV+F+TG+A A + ++++KPF + L + + Sbjct: 754 RQLADQARLSRAQLKVLFMTGYAENAAFGNGQIAPGMQMITKPFAVDALATRIRAIF 810 >gi|78048907|ref|YP_365082.1| two-component system response regulator PilR [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037337|emb|CAJ25082.1| two-component system response regulator PilR [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 484 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 28 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 87 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P V IT F ++ L ++ +SKP + L V L + N Sbjct: 88 TEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 144 >gi|258591872|emb|CBE68175.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 610 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD L+ L G+E V G + F LLLTD+ MPEM G + Sbjct: 474 RILVIDDDPLGVDVLMAFLQTLGHEAVVATGGPEGLRLLETNKFDLLLTDLGMPEMSGWD 533 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDL 110 +A+ A P L V+ +TG+ ++P A VL+KP+ L DL Sbjct: 534 VAQAAKTRLPSLPVVLVTGWGD-HIDPSRLAGTGVDVVLTKPYTLSDL 580 >gi|224371239|ref|YP_002605403.1| sigma-54 dependent two component transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223693956|gb|ACN17239.1| sigma-54 dependent two component transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 455 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 50/107 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD R L + GYEV ++G + D V+ PF ++L D+ M M G+E Sbjct: 6 RILVVDDDLGHRTMLRTLMTGWGYEVTVADDGTTGVDAVKSAPFDMVLMDMKMITMSGME 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +P L V+ +T +++V + L+KP L Sbjct: 66 ALEEIHGFNPSLPVIIMTAYSSVETAVTALKRGAVDYLTKPLDFEKL 112 >gi|224369964|ref|YP_002604128.1| sensory box histidine kinase/response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692681|gb|ACN15964.1| sensory box histidine kinase/response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 682 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL +D+ + I+ L GY V++ N A + E + L++ D++MP +G Sbjct: 563 ILLVDDEKTVLDINIEILEVLGYRVIAAENSRDAVELFVENLDTVVLVIMDVIMPGRNGF 622 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E AR E+ D+K++F++GF + N + + KP+ L +L +NR+L Sbjct: 623 ETARLLREIKEDVKILFVSGFPKGHDQFEDVFKANEQFIQKPYTLEELNMVLNRVL 678 >gi|330810912|ref|YP_004355374.1| sensor kinase/response regulator fusion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379020|gb|AEA70370.1| putative sensor kinase/response regulator fusion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 729 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++L+ ED+ ++ RF + L GYE N A + V + F + +D+VMP + G Sbjct: 612 RVLIVEDNLEVGRFANQILQDLGYETAWATNAEEALEMVGPDAMAFDAVFSDVVMPGISG 671 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I LAR + PDL V+ +G++ + + + + LSKP+ + +NR + Sbjct: 672 IALARELRQRRPDLPVVLTSGYSEELAH---SGHEGFEFLSKPYSADQVSRVLNRTI 725 >gi|325694555|gb|EGD36464.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|325696450|gb|EGD38340.1| DNA-binding response regulator [Streptococcus sanguinis SK160] Length = 244 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 + NG A+ K +E P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 31 IAQAENGREAWQKFQENPADILLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGY 85 >gi|325273899|ref|ZP_08140068.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324100955|gb|EGB98632.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 277 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD 60 + +L+ ED ++ + +AL AGY A +R++ ++LTD+ +P + Sbjct: 157 GEHVLVVEDMASVQVAVAEALTDAGYRCTVATTTDEALRHLRDDASLDMMLTDVGLPTLS 216 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G ELA A P L V+F+TG+A A + + +L KPF L +L+ +V + Sbjct: 217 GRELADLARCYRPQLPVLFMTGYADAAQDRQAFLGAGMDMLVKPFQLYELLVKVRQ 272 >gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 930 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+ R FL L +AG EV +G A +++ P L+L DI MPEMDG E Sbjct: 690 VLLAEDNQVNRLFLKHFLSEAGCEVRLAGSGGEALAQLQNGPVDLVLMDIQMPEMDGTEA 749 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R A E + L V+ +T ++ + +SKP + +L + R+L Sbjct: 750 TKRIRAGEAGEANKGLPVVALTAYSMKGDRERFLSAGLDDYVSKPVDVDELFMVMRRVL 808 >gi|312113420|ref|YP_004011016.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311218549|gb|ADP69917.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 221 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + +AL +GY V + G A+ + E ++ ++ D+ +P MDG+ Sbjct: 2 RVLLVEDDRRIADDVERALQASGYVVETAGEGEDAWFRGDTEDYAAVILDLGLPRMDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R D + V+ +T + A D L KPFH+ +L++ + ++ Sbjct: 62 VLKRWRAADRRMPVLILTARGSWAERVDGIDAGADDYLPKPFHMEELLSRLRAII 116 >gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 968 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + L K+GY V + +G A ++ +E F L+L D+ MP MDG+E Sbjct: 842 RILLAEDDSLSSITCKRMLEKSGYSVTAVKDGQEALQRLTKEDFDLILMDVQMPVMDGVE 901 Query: 64 LA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 R A+ L + I A A+ D + A + +SKP LV + R+ Sbjct: 902 ATKAIRGASNLGAKSSIP-IVAMTAYAMTGDKESFLAAGMDDYISKPVDKAALVEVIERV 960 Query: 118 LTIK 121 + +K Sbjct: 961 ICMK 964 >gi|134279887|ref|ZP_01766599.1| response regulator/HD domain protein [Burkholderia pseudomallei 305] gi|134249087|gb|EBA49169.1| response regulator/HD domain protein [Burkholderia pseudomallei 305] Length = 481 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV+ +GA+A D + L+++D+ MP M G E Sbjct: 44 ILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAVGEVDLIISDMRMPCMTGAEF 103 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 104 LARAQTLHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVRQAL 158 >gi|92114525|ref|YP_574453.1| two component, sigma54 specific, Fis family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797615|gb|ABE59754.1| two component, sigma54 specific, transcriptional regulator, Fis family [Chromohalobacter salexigens DSM 3043] Length = 461 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 55/112 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++L +D+ +R + L AGY + +A +R + +L++DI MP MDG+ L Sbjct: 9 VMLVDDEAHLRITASQTLELAGYVPEVYESAEAALSALRADFPGVLVSDIRMPGMDGMAL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R + DPDL V+ ITG ++ ++ L KPF LV V R Sbjct: 69 LREIRQRDPDLPVVLITGHGDISTAVEAMRDGAWDFLEKPFAGERLVEVVRR 120 >gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] Length = 224 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L L + GY V +NG A ++E + L + DI MP++DG E Sbjct: 2 RILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIGMPKLDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+A + D ++ +T + L+KPFH +L+ L+ Sbjct: 62 VIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALI 116 >gi|325927502|ref|ZP_08188741.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas perforans 91-118] gi|325542129|gb|EGD13632.1| response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Xanthomonas perforans 91-118] Length = 464 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 124 >gi|312129291|ref|YP_003996631.1| response regulator receiver protein [Leadbetterella byssophila DSM 17132] gi|311905837|gb|ADQ16278.1| response regulator receiver protein [Leadbetterella byssophila DSM 17132] Length = 117 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD+ + + + L K G+EV+ NG A D V+ F L++TDI+MP GIE+ Sbjct: 3 ILVAEDDELILKTVEFKLKKEGHEVMLTRNGKDAIDAVKVLDFDLVITDIMMPFASGIEI 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D V+ ++ + ++ A + KPF +L+ + RL+ Sbjct: 63 LSALRSIGKDTPVIVLSSLGQEEVVTEAFDMGAADFMVKPFSPNELMLRIKRLV 116 >gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 229 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D+ +R L L G+EVV +G +A D VR +P L+L D+++P +DG+ Sbjct: 2 RKVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVMLPGIDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR + D V+ +T A A ++KPF R++ V +L Sbjct: 62 EVLRRLRAVS-DAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVL 116 >gi|254456954|ref|ZP_05070382.1| response regulator receiver domain protein [Campylobacterales bacterium GD 1] gi|207085746|gb|EDZ63030.1| response regulator receiver domain protein [Campylobacterales bacterium GD 1] Length = 382 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI + EDD +MR+ L A+ +E+++ N A K+ + F L++TDI MP+MDGI Sbjct: 2 KIAIVEDDINMRKSLEIAMSDYEEFEIITFKNAVDALKKL-DASFDLIITDINMPKMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E + EL+ +V+ +TG A + +S L KPF + LV + R Sbjct: 61 EFVK---ELNGKYEVIIMTGNATLTRAIESIQLGVKDFLLKPFDVDTLVAAIRR 111 >gi|167746377|ref|ZP_02418504.1| hypothetical protein ANACAC_01086 [Anaerostipes caccae DSM 14662] gi|167654370|gb|EDR98499.1| hypothetical protein ANACAC_01086 [Anaerostipes caccae DSM 14662] Length = 232 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ EDD +R F+ AL + G+ ++ N+G SA + EP ++L D+ +P MDG Sbjct: 5 HERILIVEDDPQIRNFIGYALRQEGFGCITANSGESALSALVSEPVDMMLLDLGLPRMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +++ + E ++ V+ ++ + L+KPF +L+ + Sbjct: 65 MDVLKNVREWS-EMPVIIVSARDQDKEKAAALDAGADDYLTKPFSATELLARIR 117 >gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 225 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L+ EDD D+ R L +AL AGY V + +G + EP+ +++ D+ +P+MDG+ Sbjct: 2 RALVVEDDPDLNRQLGRALEDAGYAVDAAVDGEDGHFMGDTEPYDVVVLDLGLPKMDGVT 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R + D V+ +T ++ D+ A L+KPFH +L+ + L Sbjct: 62 VLERWRQAGRDFPVLILTARDRWSEKVAGFDAGAD---DYLTKPFHTEELLARMRAL 115 >gi|94969966|ref|YP_592014.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94552016|gb|ABF41940.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 286 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 ILL EDD+ +R + L GY V++ S D+ + L++TD+ MP DG Sbjct: 150 SILLVEDDNFVRNSTREILEGEGYRVLTAERAESGLDQFSRASKEVGLVITDLTMPGPDG 209 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ D + ++FI+GF AV P+ A + L+KP+ R L+ + R Sbjct: 210 FTLAKAIRLQDKRVPILFISGFGAVV--PEDPAMQT-YFLAKPYSARLLMAAIGRCF 263 >gi|84496580|ref|ZP_00995434.1| two-component regulatory protein [Janibacter sp. HTCC2649] gi|84383348|gb|EAP99229.1| two-component regulatory protein [Janibacter sp. HTCC2649] Length = 241 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L+ ED+ MR + AL + ++ + A+ + E+ L++ D+++P M GIE Sbjct: 7 RALVVEDEPAMRDIITFALETQDFTTLTAGSAEEAWTIINEQQVDLVVLDVMLPGMSGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L RR T P + V+ +T + + ++KPFH R+L Sbjct: 67 LCRRVTSTKP-VPVILLTALGETSQRIAGLEAGASDYVTKPFHPREL 112 >gi|297580848|ref|ZP_06942773.1| chemotaxis protein CheV [Vibrio cholerae RC385] gi|297534674|gb|EFH73510.1| chemotaxis protein CheV [Vibrio cholerae RC385] Length = 308 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV++ +G AYDK+ E SL+++DI Sbjct: 182 RRILIADDSSVARKQVQRAIESLGFEVIATQDGKVAYDKLVEMLNDGPITNQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHNELK-DLYVILHSSLSGV 275 >gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 248 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV + G +A +E +++ DI++P+ DG+E Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P++ V+F+T AV ++KPF L ++V + LL Sbjct: 78 VMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALL 132 >gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 925 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ R+ + LG+ +++ G A PF L+L DI MPE+DG+E Sbjct: 657 RVLLAEDNPANRKLMAALLGRLHWQIREAATGEEALRLFVRTPFDLVLLDIQMPELDGLE 716 Query: 64 LARRATELD 72 +ARR L+ Sbjct: 717 VARRIRALE 725 >gi|307725908|ref|YP_003909121.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586433|gb|ADN59830.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 509 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ +LL +D+ D+ + L GYEVV ++ + A +RE +++ TDI M + Sbjct: 393 HETVLLVDDEPDVLGVASELLMSIGYEVVPASSASEAAQILRERTDIAVVFTDITMAHGI 452 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ELAR P ++V+ +G++A L + N + + KP+ L DL Sbjct: 453 SGLELARLVRTEYPAIRVVLTSGYSAAPLRDERNGLGDVIFVQKPYRLADL 503 >gi|300789401|ref|YP_003769692.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798915|gb|ADJ49290.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+AEDD+ L L G+ VV +G +A D+ R + LL+ D++MP +D Sbjct: 1 MCARVLVAEDDEKQAEVLRLYLESEGHTVVLAPDGRAALDEARRDRPDLLVLDVMMPNVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+++ R + D+ V+ +T A L+KP+ R+L+ V LL Sbjct: 61 GLDVC-RILRQESDVAVLMLTARATEDDLLLGLDLGADDYLTKPYSPRELMARVRTLL 117 >gi|326201281|ref|ZP_08191153.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988849|gb|EGD49673.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED D+ L + L + G+EV S G + +++E + L+L DI++P G Sbjct: 2 EKILVIEDSKDVNSMLSEILTEEGFEVFSAYTGTDGFKEIKENQYDLILLDIMLPYKSGD 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ + + D+ V+ I+ + L D ++KPF L ++V V+ Sbjct: 62 EILKEVRKF-SDVPVIVISAKDTIGLKIDLLKMGADDYVTKPFDLGEVVARVS 113 >gi|281421129|ref|ZP_06252128.1| putative response regulator receiver domain protein [Prevotella copri DSM 18205] gi|281404664|gb|EFB35344.1| putative response regulator receiver domain protein [Prevotella copri DSM 18205] Length = 1378 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 5/110 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D +D R F+ + L Y VV NG A++K+ + L+L+D++MP MDG EL Sbjct: 1140 VLLVDDSEDFREFMNEVL--TDYTVVEAVNGQDAWNKIIDRRPDLILSDVMMPVMDGNEL 1197 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVN 112 R + D + FI A + + K + ++KPF + D++N Sbjct: 1198 CRMCKDNDETTAIPFIMLSARMGDEQRKESLKCGADEYIAKPFDI-DMLN 1246 >gi|254510175|ref|ZP_05122242.1| response regulator [Rhodobacteraceae bacterium KLH11] gi|221533886|gb|EEE36874.1| response regulator [Rhodobacteraceae bacterium KLH11] Length = 424 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D RR L+ +L K G+EV+ +NG +A D +P L+L+D VMP M G+ Sbjct: 20 RKVLVVDDSRLQRRILVASLKKWGFEVLEADNGEAALDLCLSDPPQLVLSDWVMPGMSGL 79 Query: 63 ELARRATELDPDLKVMFI 80 E L + FI Sbjct: 80 EFCHAFRNLATEQYSYFI 97 >gi|162456083|ref|YP_001618450.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161166665|emb|CAN97970.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 461 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D+ + L L K G+ + A A++ + E F +++TD+ M M Sbjct: 1 MTGRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R + PDL V+ IT F ++ + ++KPF L L V R L Sbjct: 61 GLDLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERAL 118 >gi|197122715|ref|YP_002134666.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196172564|gb|ACG73537.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 469 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D+ D R L + + GY+V + ++G A + E ++LTD+VMP MD Sbjct: 1 MRYRVLIVDDETDSREALAELTQRWGYDVQTASDGTEALRRAIEGHPDVILTDLVMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L R PD V+ +TG + Sbjct: 61 GLWLLRALRAELPDCPVVLLTGRGTI 86 >gi|157736714|ref|YP_001489397.1| two-component response regulator [Arcobacter butzleri RM4018] gi|157698568|gb|ABV66728.1| two-component response regulator [Arcobacter butzleri RM4018] Length = 608 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 56/106 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L EDDD+ R L L K +++ NG + ++ L++TDI MP MDGI++ Sbjct: 16 LLYVEDDDNTREELEYFLEKKALKLIVAKNGQEGLELFKKHNPDLVITDIQMPVMDGIQM 75 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + E++P ++ + +T F+ + ++ + L+KP +L L Sbjct: 76 IKAIKEMNPQVQTVIVTTFSDIEYLFEAIKLNISNYLTKPLNLYAL 121 >gi|152993452|ref|YP_001359173.1| two-component response regulator [Sulfurovum sp. NBC37-1] gi|151425313|dbj|BAF72816.1| two-component response regulator [Sulfurovum sp. NBC37-1] Length = 217 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD ++ + + L + GYEV S +G A D + E + +LL D+ +P +DG E Sbjct: 2 KILLLEDDIILQEIIEEFLTENGYEVESFYDGEKALDSIGENRYDMLLLDVNVPNIDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + E+ ++IT A + L KPF L +L + ++ + Sbjct: 62 ILSYLREIGNTTPAIYITSLAGIDDLKKGFDLGADDYLKKPFELEELRARIEHIIRL 118 >gi|153003316|ref|YP_001377641.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152026889|gb|ABS24657.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 126 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 8/119 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 +IL+ EDD +R+ L + L G+EV +NGA A D + SL+L D+ MP MDG Sbjct: 10 RILVVEDDVAIRQTLAELLADEGFEVACASNGAEALDHLSCSAAPSLILLDLAMPVMDGW 69 Query: 63 ELARRATELDPDL----KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R A DP L V+ +A + AP L+KPF L L++ ++RL Sbjct: 70 KF-RSAQREDPRLARIPTVVVSASHSADRRCAEELAPD--AFLAKPFDLDSLMSTIHRL 125 >gi|160897318|ref|YP_001562900.1| response regulator receiver protein [Delftia acidovorans SPH-1] gi|160362902|gb|ABX34515.1| response regulator receiver protein [Delftia acidovorans SPH-1] Length = 255 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD + RF+ AL +VSC + A ++ +PF+LL+TD+++P G+EL Sbjct: 8 VLLVEDDASIARFVTLALEGMPLTLVSCASAEQAQSLLQSQPFALLITDLMLPGASGVEL 67 Query: 65 AR--RATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R++ V+F G A VAL + + VL KP + LV+ V +L + Sbjct: 68 IEWLRSSPQAGCSAVVFSAGVRADVALRLEQL--QVWGVLRKPVSVAQLVDCVESVLAAQ 125 >gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1352 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED++ L + L GYEV NG A E L++ DI MPE+DG+E Sbjct: 1229 RVLVAEDNEMNLMVLSEYLQAYGYEVCVARNGREALQVAAEWRPDLIIMDIQMPELDGLE 1288 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R RA ++ +T A L+KP LR L + RLLT Sbjct: 1289 AIRQLRAQAAYATTPIIAVTALAMPGDREQCLLAGATDYLTKPISLRRLARHIERLLT 1346 >gi|110598805|ref|ZP_01387064.1| Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type:ATPase associated with various cellular activities, AAA_5 [Chlorobium ferrooxidans DSM 13031] gi|110339595|gb|EAT58111.1| Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type:ATPase associated with various cellular activities, AAA_5 [Chlorobium ferrooxidans DSM 13031] Length = 465 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ ED+ L L K GY V+ N A +R ++L+D MP M Sbjct: 14 MDYTILVVEDEPVQLESLAGFLSKQGYRVLKAANPEQAILNIRNSAVDIVLSDFRMPGMS 73 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G++L E++P ++V+ +T + V D+ A ++KP L L Sbjct: 74 GVKLLEAIKEINPSIQVIIMTAYGTVESATDAMKLGAADYITKPIDLYRL 123 >gi|71737172|ref|YP_273446.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557725|gb|AAZ36936.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 245 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L + R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|109899354|ref|YP_662609.1| two component, sigma54 specific, Fis family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109701635|gb|ABG41555.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudoalteromonas atlantica T6c] Length = 447 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R L+ L GY V++ + + EE L+++DI M EM G+ L Sbjct: 6 ILIVEDDAGLREALVDTLLLGGYNVLAADCAERGMMMMNEEAIDLVVSDIQMGEMSGLSL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R P++ V+ +T +A + + LSKPF L+N V R Sbjct: 66 LRSLKNKYPNVPVLLMTAYATIDDAVTAMRDGATDYLSKPFAPEVLLNLVGR 117 >gi|94310139|ref|YP_583349.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353991|gb|ABF08080.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 210 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVREEPFSLLLTDIVMPE 58 + + + +DD+ MR L L GY+V S N+ SAYD + S L+ D+ MP Sbjct: 12 GETVFIVDDDEAMRDSLTWLLEGNGYQVRSFNSAEQFLSAYDASQ---VSCLILDVRMPG 68 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G EL R + D+ ++FITG V + + + KPF +L + V R+L Sbjct: 69 MSGPELQERMIAENIDIPIVFITGHGDVPMAVSTMKRGAIDFIEKPFDESELRSLVERML 128 >gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 228 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ D+ L L GYEV + NGA K +++ L++ D++MPEMDGIE Sbjct: 7 RILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKKKQPHLIILDVMMPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A P L+ IT A + + A +A ++KP + V++V LL Sbjct: 67 -ACEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKVKALL 123 >gi|258621044|ref|ZP_05716078.1| chemotaxis protein CheV [Vibrio mimicus VM573] gi|258586432|gb|EEW11147.1| chemotaxis protein CheV [Vibrio mimicus VM573] Length = 308 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK----VREEP----FSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV+S +G AY+K V++ P SL+++DI Sbjct: 182 RRILIADDSSVARKQVQRAIESIGFEVISTKDGKDAYEKLLEMVKDGPIRNQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHNELK-DLYVILHSSLSGV 275 >gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] Length = 240 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 19/126 (15%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D+ L + GY V++ +GA A K ++P ++L D+ MPE+DG+E Sbjct: 20 RILIVDDEPDIVEMLRCFFERRGYFVLTATDGAEALKKAEQQP-DMILLDVNMPELDGME 78 Query: 64 LARRATELDPDLKVMFIT----------GFAA----VALNPDSNAPKNAKVLSKPFHLRD 109 + RR + P ++F+T GFAA L P S A A+V + HLR Sbjct: 79 VCRRIRDFVP-CPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAA---HLRR 134 Query: 110 LVNEVN 115 +N Sbjct: 135 ETRRIN 140 >gi|270308774|ref|YP_003330832.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] gi|270154666|gb|ACZ62504.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] Length = 1379 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ +R L L + G++V C N A DK+RE + ++ DI MP M G EL Sbjct: 1258 LVIDDEPAVRSLLKIILTQDGHQVEECENPEKALDKLREHTYDIIFLDIRMPGMSGTELY 1317 Query: 66 RRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + P L +++FITG + A + + ++KPF + L ++R+L+ Sbjct: 1318 DKIISNWPGLTGRIVFITGDTSDAKVREYLDNHDIPYVTKPFDMSLLKTAMHRVLS 1373 >gi|160932132|ref|ZP_02079523.1| hypothetical protein CLOLEP_00966 [Clostridium leptum DSM 753] gi|156868734|gb|EDO62106.1| hypothetical protein CLOLEP_00966 [Clostridium leptum DSM 753] Length = 496 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 5 ILLAEDDDDMRRFLI---KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED + R +I +++ E+V +G SA D ++++ +LLTDI MP MDG Sbjct: 4 IMVVEDSKPIVRDIIGKIQSIRPDIKEIVVTYDGVSALDMLKKQKPDILLTDIKMPMMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +EL +A E+ P+LK + I+G+ + + + + KP D Sbjct: 64 LELISKAKEIYPELKCVVISGYGDFEFTHQALKLQVDEYILKPVDFEDF 112 >gi|148656158|ref|YP_001276363.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148568268|gb|ABQ90413.1| GAF sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 1247 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDDD +R +AL + V + + G A+ + + +++TD+ MP MDG+EL Sbjct: 1126 ILLVEDDDLVRTMAQRALERLECRVDAVSRGEEAFARALAADYDVVMTDLQMPGMDGVEL 1185 Query: 65 ARRATELDPDLKVMFITG 82 R L P L+ + +TG Sbjct: 1186 YERLRALRPSLRWLILTG 1203 >gi|121998122|ref|YP_001002909.1| Fis family two component sigma-54 specific transcriptional regulator [Halorhodospira halophila SL1] gi|121589527|gb|ABM62107.1| two component, sigma54 specific, transcriptional regulator, Fis family [Halorhodospira halophila SL1] Length = 457 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + R + L +GY +C +G A ++ +P ++TD+ M MDG+ Sbjct: 6 RILVVDDDPSLCRLMEMRLEASGYAPTTCESGERALAELERQPADAVITDLRMEGMDGLA 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L E P L V+ +T ++ ++ + L+KPF +L+ ++ + LT + Sbjct: 66 LFDAVRERWPALPVIILTAHGSIQDAVEATRRGVHEFLTKPFDPPELLEQLEKALTAR 123 >gi|313113436|ref|ZP_07799025.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624163|gb|EFQ07529.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 263 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 63/114 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ +R + + L +GYEV +C +G +A + + E + L+L D+ +P++DG++ Sbjct: 40 RLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALEALAAERYDLVLLDLNLPKVDGMQ 99 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R D + V+ ++ + +A + LSKPFHL +L V L Sbjct: 100 VLRTLRRHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSL 153 >gi|242239998|ref|YP_002988179.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] gi|242132055|gb|ACS86357.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 231 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED D++ +L KAL ++G+ V +G +A ++ E ++L++ D+ +P+MDG Sbjct: 9 RLLLVEDHDELAHWLEKALSESGFAVDRAGDGMTAEQLLQLETYTLMVLDVSLPKMDGFS 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + +L V+ +T VA L+KPF + +L + LL Sbjct: 69 VLARLRKRGQNLPVLLLTARTDVADRVRGLNLGADDYLAKPFDVAELEARLRALL 123 >gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] Length = 249 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED DM R + L Y V SC +G A D + + ++ DI+MP MDG++ Sbjct: 21 RILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIMMPVMDGLQ 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ + + V+ +T ++ L KPF +L+ + +L Sbjct: 81 VLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVML 135 >gi|215433423|gb|ACJ66677.1| response regulator [Myxococcus fulvus HW-1] Length = 135 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%) Query: 26 GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAA 85 G+E+ NG A +++ EP +L+L D++MP MDG E A+R + P+ + Sbjct: 33 GFEIRRARNGKEALERLEPEPPNLILLDLMMPVMDGWEFAQRMRQKPPE-----VARIPL 87 Query: 86 VALNPDSNAPKNAK------VLSKPFHLRDLVNEVNRLL 118 + L+ D N A L+KPF L DL++ V R L Sbjct: 88 IVLSADRNVGSKASDIGAVGHLAKPFELNDLLDMVRRSL 126 >gi|242278607|ref|YP_002990736.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] gi|242121501|gb|ACS79197.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] Length = 118 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ ++ L + L G++ +GA A DKV+ + L + D+ MP M G+E Sbjct: 2 KILLVDDESELVSALAERLSFRGFDADWACSGAEAIDKVKNNEYDLAVLDVKMPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + +K +F++G + + + A + L KP + +LV ++N L K Sbjct: 62 LRAELNNIRSGMKYIFLSGHGSED-DYKAGAAEAECYLVKPVKIEELVEKINLALGSK 118 >gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] Length = 225 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKIL+ ED++ + RF+ L GYEV +G + DK F L++ D+++P ++ Sbjct: 1 MAQKILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVMLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ RR + + + V+ +T AV L+KPF + +L+ + Sbjct: 61 GLEVLRRIRK-ESVVPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIR 114 >gi|116253168|ref|YP_769006.1| C4-dicarboxylate transport two-component response regulator sigma 54 transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257816|emb|CAK08914.1| putative C4-dicarboxylate transport two-component response regulator sigma 54 transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 448 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+RR + L AG+ V + + +A + + ++TDI MPE+DG++L Sbjct: 7 VALIDDDKDLRRATAQTLELAGFSVSAYDGAKAALADLPADFAGPIVTDIRMPEIDGLQL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +D DL V+ +TG + + + ++KPF LV V R Sbjct: 67 FATLQGMDADLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSVRR 118 >gi|114765683|ref|ZP_01444782.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Pelagibaca bermudensis HTCC2601] gi|114542005|gb|EAU45039.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Roseovarius sp. HTCC2601] Length = 684 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGI 62 IL+ +D+ +R + ++L AG++V+ + P S LLTD+ +P M G Sbjct: 568 ILVVDDEVLVRMVVAESLTDAGFKVLEAGTARDGLALLEAHPEISALLTDVGLPGGMTGR 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAP--KNAKVLSKPFHLRDLVNEVNRLLT 119 ELAR A E PDL +MF+TG+ A S+ P A+VL KPF +V + L + Sbjct: 628 ELARAAREAHPDLGIMFMTGYDDEA----SSGPALAGAEVLLKPFAFDVMVRRMVELTS 682 >gi|56696955|ref|YP_167317.1| nitrogen regulation protein NtrC [Ruegeria pomeroyi DSS-3] gi|56678692|gb|AAV95358.1| nitrogen regulation protein NtrC [Ruegeria pomeroyi DSS-3] Length = 457 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 63/122 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVAEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTARALEQ 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|11499830|ref|NP_071074.1| response regulator [Archaeoglobus fulgidus DSM 4304] gi|2648277|gb|AAB89010.1| response regulator [Archaeoglobus fulgidus DSM 4304] Length = 121 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 LL DDDD R ++K + K Y+++ +NG A + L+L DI MP+MDG+E Sbjct: 6 LLIVDDDDSIREIVKIMLK-DYDIIEASNGEEAVRAYKMFKPDLVLMDIQMPKMDGVEAT 64 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R ++DP K++ +T FA + + +V+ KPF R L Sbjct: 65 REILKIDPHAKIVGLTAFAR-SRGREMLKIGALEVVEKPFTRRTL 108 >gi|27380297|ref|NP_771826.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27353461|dbj|BAC50451.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 131 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDI-VMPEMDG 61 IL+ ED++ ++ + AL + G+++ + +G A V +S L+TD+ + M G Sbjct: 11 ILVVEDEEPLQEIVSDALKEGGFDLTTVPSGQEAVAMVESGVVKYSALVTDVNLKGPMKG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+AR +++P V+++TG A A + S N+ +L KPF LV V++LL Sbjct: 71 WEIARLVRQINPAFPVVYMTG--AAAEDWASEGVPNSILLKKPFAPAQLVTAVSQLL 125 >gi|320353940|ref|YP_004195279.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122442|gb|ADW17988.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 462 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+ + + L + L GYEV + ++G + V L+L+D+ MP MDGI Sbjct: 2 HTILVVDDEPNYQIVLSELLKDEGYEVFTADSGLAGLPIVYSTDLDLVLSDMKMPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E + E + +L V+ IT +A V ++ L+KPF L+ V + Sbjct: 62 EFLGKIKEYNRELPVILITAYAEVEKAVEAMRLGAFTYLAKPFSNTQLLASVTK 115 >gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 15/120 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + L G+ V CN G S + ++EE F LL+ DI++P +DG Sbjct: 2 KRILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIMLPGIDGF 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ +R ++ D+ ++ ++ + L D ++KPF +LV VN Sbjct: 62 EILKRVRDV-KDIPILLVSAKKEEIDKIRGLGLGADD-------YITKPFSPGELVARVN 113 >gi|301168535|emb|CBW28125.1| nitrogen regulation protein [Bacteriovorax marinus SJ] Length = 499 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +DD ++ + +AL ++V + +NG A V +E + L++ D+ MPEM GI Sbjct: 2 HKVLVVDDDKVLQDSVKQALEFHHFKVDTADNGKEALSCVYKEKYDLVVMDVNMPEMSGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E + DP + V+ +T ++ V + L KP +LV + R L ++ Sbjct: 62 EALTEIKKYDPSIIVLILTAYSNVGDAVKAVKEGAYNYLEKPISSENLVALIKRALKARS 121 >gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] Length = 260 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A + + L++ D+ +P MDG+E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLPGMDGLE 97 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 152 >gi|254445262|ref|ZP_05058738.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198259570|gb|EDY83878.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 203 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+ + EDD RR L GY+V S +G A+D + E ++++D ++P MDG+E Sbjct: 6 KVHIVEDDKTTRRLLENVTSMLGYDVQSYEDGQEAWDAFQIERPQIVISDWMLPTMDGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 L R+ E + F+ A P+ NA V L KP ++ N Sbjct: 66 LCRKLRESMKESYTYFVLVTAQKRSRPNLEQAINAGVDDFLKKPIGSDEIWN 117 >gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 279 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 ++L+ +D+ + L AL G++V S +GA A + RE +P +++L D+ +P+MDG+ Sbjct: 54 RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVL-DVALPDMDGL 112 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R P++ V+F+T AV ++KPF L ++V + L+ Sbjct: 113 TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLI 168 >gi|163761469|ref|ZP_02168542.1| two component transcriptional regulator, winged helix family protein [Hoeflea phototrophica DFL-43] gi|162281313|gb|EDQ31611.1| two component transcriptional regulator, winged helix family protein [Hoeflea phototrophica DFL-43] Length = 226 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +ILLAEDDD +R+ + +AL AGY V S NG A+ E ++ + D+ +P MD Sbjct: 2 ITMRILLAEDDDRIRQDVSRALEAAGYVVDSEANGEEAWFLGDTETYAAAILDLGLPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+ + +R D V+ +T + + L KPF + +++ Sbjct: 62 GLAVLKRWRAAGRDFPVLVLTARGTWSERVEGIDSGADDYLPKPFRMEEML 112 >gi|146282313|ref|YP_001172466.1| sensor/response regulator hybrid [Pseudomonas stutzeri A1501] gi|145570518|gb|ABP79624.1| probable sensor/response regulator hybrid [Pseudomonas stutzeri A1501] Length = 994 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LLA DDD++ F L AG+ V++ + A D ++ +L+TD MP M G +L Sbjct: 884 LLAVDDDELVLFSTAGILEAAGHRVLTARSAGEALDLLQVNQVDILITDHAMPLMSGAQL 943 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A E P L ++ ++G+A + P + L+KPF +L++ + +L Sbjct: 944 AAVVRETRPQLPILLVSGYAEL---PSTAPALPLHRLAKPFSQDELLDAIEQL 993 >gi|120554908|ref|YP_959259.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120324757|gb|ABM19072.1| response regulator receiver protein [Marinobacter aquaeolei VT8] Length = 574 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLAED R L + + + G+ V+ +G A D RE L+L D +MP MDG+E Sbjct: 2 KVLLAEDSASDRLILARLVKRLGHTVIEAEDGTEAVDLFRETQPDLVLLDALMPRMDGME 61 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNRL 117 AR+ L + + ++F+T + L KP++ L +N NR+ Sbjct: 62 AARQIKALAGERLVPLIFLTSLSGAGDLARCLEAGGDDFLVKPYNRVILEAKINAFNRM 120 >gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 233 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 12/124 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ +D+ +R L AL AGYE + +AY ++ ++ ++L D ++P G Sbjct: 3 THKVLIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIVDDRPDIVLLDWMLPGGSG 62 Query: 62 IELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 IEL RR E+ DL V+ +T AA + N + V ++KPF LR+L+ + Sbjct: 63 IELLRRIKRAEMTQDLPVIMLTAKAA-----EHNVIQGLDVGADDYITKPFALRELLARI 117 Query: 115 NRLL 118 LL Sbjct: 118 KALL 121 >gi|95929469|ref|ZP_01312212.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95134585|gb|EAT16241.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 462 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 53/102 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L + LG+ GY++ C+ SA +E L+L D+ + G++ Sbjct: 3 KILIVDDEAFIRENLERILGEDGYQLFGCDGPKSALQIAEQEEIDLVLLDLNLGAASGLD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + ++ +DPD+ V+ ITG+ V + + KPF Sbjct: 63 VLQQLQAVDPDILVIIITGYGTVESAVQALKMGAYDYIKKPF 104 >gi|95928298|ref|ZP_01311046.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95135569|gb|EAT17220.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 310 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED L G++ V +NG A D++++E F +++TD VMPEMDG+E Sbjct: 6 KVLLVEDSRTQALRFQFMLEAHGFDAVVVSNGREALDRLKQEYFPIIITDWVMPEMDGVE 65 Query: 64 LAR--RATELDPDLKVMFITG 82 L + R+ + D + + +T Sbjct: 66 LCQAIRSRKFDGYVFIFLVTS 86 >gi|149371430|ref|ZP_01890916.1| response regulator receiver domain protein (CheY-like) [unidentified eubacterium SCB49] gi|149355568|gb|EDM44127.1| response regulator receiver domain protein (CheY-like) [unidentified eubacterium SCB49] Length = 121 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 12/126 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ ++ L A K G+EV +G+ A + V ++L DI+MP +D Sbjct: 1 MMHKILIVDDEPNIVMSLEYAFKKKGFEVFIARDGSEALEIVENHIPDIVLLDIMMPNVD 60 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G + ++ L KV+F+T A N S+ K K+ L+KPF ++ +V+E Sbjct: 61 GYQTLQQIKNKPLLQATKVVFLT-----AKNRASDIEKGLKLGADKYLTKPFSIKKIVSE 115 Query: 114 VNRLLT 119 + LLT Sbjct: 116 IQELLT 121 >gi|148358761|ref|YP_001249968.1| two component response regulator PilR [Legionella pneumophila str. Corby] gi|296106806|ref|YP_003618506.1| two-component system response regulator PilR [Legionella pneumophila 2300/99 Alcoy] gi|148280534|gb|ABQ54622.1| two component response regulator PilR [Legionella pneumophila str. Corby] gi|295648707|gb|ADG24554.1| two-component system response regulator PilR [Legionella pneumophila 2300/99 Alcoy] Length = 442 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ D+R L L + G + ++ + +++ +SL+LTD+ +P+ DGIE Sbjct: 5 KVLVIDDEPDIRELLTLTLSRMGLACDAASDFKQGVEHIKQNYYSLVLTDMRLPDGDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + P + V IT + V ++ +SKP L+ L + V L+++N Sbjct: 65 IVKFIQKYKPQVPVAVITAYGNVEGAVNTLKAGAFDYVSKPIDLKMLRDLVKTALSMQN 123 >gi|160879540|ref|YP_001558508.1| two component AraC family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428206|gb|ABX41769.1| two component transcriptional regulator, AraC family [Clostridium phytofermentans ISDg] Length = 523 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 34/49 (69%) Query: 33 NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 NNG +A + EE LL+TDI MP MDG ELAR +++P++ V+F+T Sbjct: 35 NNGENALKSIGEEKVDLLVTDITMPAMDGFELARNLRKINPEMNVIFLT 83 >gi|86133889|ref|ZP_01052471.1| two-component system response regulator [Polaribacter sp. MED152] gi|85820752|gb|EAQ41899.1| two-component system response regulator [Polaribacter sp. MED152] Length = 233 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D D R ++ L + YEV+ +G A D + + LL+TD MPEMD Sbjct: 1 MKTKILVVDDSIDSRIYVSSIL--SDYEVLEAKSGEEALDTISKVNIDLLITDYNMPEMD 58 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G EL + + + ++ IT ++ + KPF +L+N ++R Sbjct: 59 GFELVSKIKQKKYEFPIIIITSLTSLDKKKKMLRLGIDNYVYKPFFKEELINIISR 114 >gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 243 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ ED+ + R L L + G+EV + ++G++ ++K E + L+L D+++P M+ Sbjct: 1 MGQRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLPGMN 60 Query: 61 GIELARRATELDPDLKVMFIT---GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+++ R ++ +T G A V S A ++KPF + +L+ V + Sbjct: 61 GLDILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGAD---DYITKPFGVSELLARVTAV 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076603|gb|ADJ66002.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED ++ R+L KA+ A V +NGA A + + ++L++ D+ +P MDG+E Sbjct: 2 RILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R V+ +T +A L+KPF L +L V LL Sbjct: 62 VLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALL 116 >gi|265752273|ref|ZP_06088066.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263237065|gb|EEZ22535.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1428 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G+ +EVV+ +G S ++ R L++ D++MP M G Sbjct: 1168 RKVLIIEDDNDVREFLKEEVGQY-FEVVAEADGPSGLERARTYDADLIICDVLMPGMTGF 1226 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ + D + ++ +T ++ + + ++KPF + L+ +L+ Sbjct: 1227 EVTRKLKNDFDTSHIPIILLTAMSSAESHLEGVESGADAYITKPFSPKLLLARAFKLI 1284 >gi|258625272|ref|ZP_05720180.1| chemotaxis protein CheV [Vibrio mimicus VM603] gi|262170820|ref|ZP_06038498.1| chemotaxis protein CheV [Vibrio mimicus MB-451] gi|258582445|gb|EEW07286.1| chemotaxis protein CheV [Vibrio mimicus VM603] gi|261891896|gb|EEY37882.1| chemotaxis protein CheV [Vibrio mimicus MB-451] Length = 257 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK----VREEP----FSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV+S +G AY+K V++ P SL+++DI Sbjct: 131 RRILIADDSSVARKQVQRAIESIGFEVISTKDGKDAYEKLLEMVKDGPIRNQISLVISDI 190 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 191 EMPEMDGYTLTAEIRRHNEL-KDLYVILHSSLSGV 224 >gi|254882252|ref|ZP_05254962.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254835045|gb|EET15354.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1428 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G+ +EVV+ +G S ++ R L++ D++MP M G Sbjct: 1168 RKVLIIEDDNDVREFLKEEVGQY-FEVVAEADGPSGLERARTYDADLIICDVLMPGMTGF 1226 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ + D + ++ +T ++ + + ++KPF + L+ +L+ Sbjct: 1227 EVTRKLKNDFDTSHIPIILLTAMSSAESHLEGVESGADAYITKPFSPKLLLARAFKLI 1284 >gi|237726904|ref|ZP_04557385.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435430|gb|EEO45507.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1428 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G+ +EVV+ +G S ++ R L++ D++MP M G Sbjct: 1168 RKVLIIEDDNDVREFLKEEVGQY-FEVVAEADGPSGLERARTYDADLIICDVLMPGMTGF 1226 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ + D + ++ +T ++ + + ++KPF + L+ +L+ Sbjct: 1227 EVTRKLKNDFDTSHIPIILLTAMSSAESHLEGVESGADAYITKPFSPKLLLARAFKLI 1284 >gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 235 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G++V S +GA A + RE ++ D+ +P+MDG+ Sbjct: 10 RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGLT 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R P++ V+F+T AV ++KPF L ++V + L+ Sbjct: 70 LLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLI 124 >gi|254511176|ref|ZP_05123243.1| nitrogen regulation protein NtrC [Rhodobacteraceae bacterium KLH11] gi|221534887|gb|EEE37875.1| nitrogen regulation protein NtrC [Rhodobacteraceae bacterium KLH11] Length = 455 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVAEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + L KPF L DL+ R L Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRTARALDQ 120 Query: 121 KN 122 K Sbjct: 121 KQ 122 >gi|242279657|ref|YP_002991786.1| Fis family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122551|gb|ACS80247.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio salexigens DSM 2638] Length = 444 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D L + L GY+V++C A + E +++TD MP+ G++ Sbjct: 6 RILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMPQATGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R E D+++M ITG+ +++ ++ + L KPF +L ++R++ Sbjct: 66 LIRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRIV 120 >gi|212690922|ref|ZP_03299050.1| hypothetical protein BACDOR_00410 [Bacteroides dorei DSM 17855] gi|212666154|gb|EEB26726.1| hypothetical protein BACDOR_00410 [Bacteroides dorei DSM 17855] Length = 1432 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G+ +EVV+ +G S ++ R L++ D++MP M G Sbjct: 1172 RKVLIIEDDNDVREFLKEEVGQY-FEVVAEADGPSGLERARTYDADLIICDVLMPGMTGF 1230 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ + D + ++ +T ++ + + ++KPF + L+ +L+ Sbjct: 1231 EVTRKLKNDFDTSHIPIILLTAMSSAESHLEGVESGADAYITKPFSPKLLLARAFKLI 1288 >gi|150002755|ref|YP_001297499.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931179|gb|ABR37877.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1426 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G+ +EVV+ +G S ++ R L++ D++MP M G Sbjct: 1166 RKVLIIEDDNDVREFLKEEVGQY-FEVVAEADGPSGLERARTYDADLIICDVLMPGMTGF 1224 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ + D + ++ +T ++ + + ++KPF + L+ +L+ Sbjct: 1225 EVTRKLKNDFDTSHIPIILLTAMSSAESHLEGVESGADAYITKPFSPKLLLARAFKLI 1282 >gi|76810964|ref|YP_332336.1| response regulator [Burkholderia pseudomallei 1710b] gi|121599050|ref|YP_993985.1| response regulator [Burkholderia mallei SAVP1] gi|124385090|ref|YP_001028350.1| response regulator [Burkholderia mallei NCTC 10229] gi|126448153|ref|YP_001081995.1| response regulator [Burkholderia mallei NCTC 10247] gi|126452409|ref|YP_001065039.1| response regulator/HD domain-containing protein [Burkholderia pseudomallei 1106a] gi|167004166|ref|ZP_02269936.1| response regulator [Burkholderia mallei PRL-20] gi|167718218|ref|ZP_02401454.1| response regulator/HD domain protein [Burkholderia pseudomallei DM98] gi|167737254|ref|ZP_02410028.1| response regulator/HD domain protein [Burkholderia pseudomallei 14] gi|167814381|ref|ZP_02446061.1| response regulator/HD domain protein [Burkholderia pseudomallei 91] gi|167822859|ref|ZP_02454330.1| response regulator/HD domain protein [Burkholderia pseudomallei 9] gi|167844432|ref|ZP_02469940.1| response regulator/HD domain protein [Burkholderia pseudomallei B7210] gi|167892949|ref|ZP_02480351.1| response regulator/HD domain protein [Burkholderia pseudomallei 7894] gi|167901424|ref|ZP_02488629.1| response regulator/HD domain protein [Burkholderia pseudomallei NCTC 13177] gi|167909664|ref|ZP_02496755.1| response regulator/HD domain protein [Burkholderia pseudomallei 112] gi|167917677|ref|ZP_02504768.1| response regulator/HD domain protein [Burkholderia pseudomallei BCC215] gi|217419648|ref|ZP_03451154.1| response regulator/HD domain protein [Burkholderia pseudomallei 576] gi|226196653|ref|ZP_03792233.1| response regulator/HD domain protein [Burkholderia pseudomallei Pakistan 9] gi|237810949|ref|YP_002895400.1| response regulator [Burkholderia pseudomallei MSHR346] gi|238563845|ref|ZP_00438178.2| response regulator [Burkholderia mallei GB8 horse 4] gi|242315884|ref|ZP_04814900.1| response regulator/HD domain protein [Burkholderia pseudomallei 1106b] gi|254176702|ref|ZP_04883359.1| response regulator [Burkholderia mallei ATCC 10399] gi|254187640|ref|ZP_04894152.1| response regulator/HD domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254196987|ref|ZP_04903411.1| response regulator/HD domain protein [Burkholderia pseudomallei S13] gi|254203772|ref|ZP_04910132.1| response regulator [Burkholderia mallei FMH] gi|254208749|ref|ZP_04915097.1| response regulator [Burkholderia mallei JHU] gi|254261055|ref|ZP_04952109.1| response regulator/HD domain protein [Burkholderia pseudomallei 1710a] gi|254296247|ref|ZP_04963704.1| response regulator/HD domain protein [Burkholderia pseudomallei 406e] gi|254360199|ref|ZP_04976469.1| response regulator [Burkholderia mallei 2002721280] gi|76580417|gb|ABA49892.1| response regulator [Burkholderia pseudomallei 1710b] gi|121227860|gb|ABM50378.1| response regulator [Burkholderia mallei SAVP1] gi|124293110|gb|ABN02379.1| response regulator [Burkholderia mallei NCTC 10229] gi|126226051|gb|ABN89591.1| response regulator/HD domain protein [Burkholderia pseudomallei 1106a] gi|126241023|gb|ABO04116.1| response regulator [Burkholderia mallei NCTC 10247] gi|147745284|gb|EDK52364.1| response regulator [Burkholderia mallei FMH] gi|147750625|gb|EDK57694.1| response regulator [Burkholderia mallei JHU] gi|148029439|gb|EDK87344.1| response regulator [Burkholderia mallei 2002721280] gi|157806003|gb|EDO83173.1| response regulator/HD domain protein [Burkholderia pseudomallei 406e] gi|157935320|gb|EDO90990.1| response regulator/HD domain protein [Burkholderia pseudomallei Pasteur 52237] gi|160697743|gb|EDP87713.1| response regulator [Burkholderia mallei ATCC 10399] gi|169653730|gb|EDS86423.1| response regulator/HD domain protein [Burkholderia pseudomallei S13] gi|217396952|gb|EEC36968.1| response regulator/HD domain protein [Burkholderia pseudomallei 576] gi|225931184|gb|EEH27191.1| response regulator/HD domain protein [Burkholderia pseudomallei Pakistan 9] gi|237502681|gb|ACQ94999.1| response regulator [Burkholderia pseudomallei MSHR346] gi|238519842|gb|EEP83308.1| response regulator [Burkholderia mallei GB8 horse 4] gi|242139123|gb|EES25525.1| response regulator/HD domain protein [Burkholderia pseudomallei 1106b] gi|243060435|gb|EES42621.1| response regulator [Burkholderia mallei PRL-20] gi|254219744|gb|EET09128.1| response regulator/HD domain protein [Burkholderia pseudomallei 1710a] Length = 481 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV+ +GA+A D + L+++D+ MP M G E Sbjct: 44 ILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAVGEVDLIISDMRMPCMTGAEF 103 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 104 LARAQTLHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVRQAL 158 >gi|330950103|gb|EGH50363.1| helix-turn-helix, Fis-type [Pseudomonas syringae Cit 7] Length = 249 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R+ + + L +G+EV D++ E ++LTD+ MP M Sbjct: 1 MLNSVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLDRIPEHFPGVVLTDVRMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R D DL V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLTRLQGADRDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 118 >gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +DD + RFL L +EV++ NNG A +E L++ D++MP MD Sbjct: 1 MKPKVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVMMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G E+ R EL D+ ++ +T A + + + ++ L+KPF +L + Sbjct: 61 GWEVCSRLHELS-DIPIILLT-----AKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIR 114 Query: 116 RLL 118 +L Sbjct: 115 AIL 117 >gi|297571976|ref|YP_003697750.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932323|gb|ADH93131.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 226 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD + L++A + GY+V S G A D V L++ D+ +P+MDG++ Sbjct: 3 KVLIVEDDSAISGPLVRAFTREGYDVTSVATGQEAIDLV-SSSIDLMVLDLGLPDMDGLD 61 Query: 64 LARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR A ++ +T A + + D+ A ++KPF L +L+ V LL Sbjct: 62 VARAARTEGQSCPILILTARAEEVDMVVGLDAGADDY---VTKPFRLAELLARVRALL 116 >gi|224370502|ref|YP_002604666.1| two-component response regulator fusion protein (N:response regulator receiver-C:HD-GAF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223693219|gb|ACN16502.1| two-component response regulator fusion protein (N:response regulator receiver-C:HD-GAF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 360 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R K L K GY+ NG A + + +E F L+++DI MP M+GI+L Sbjct: 14 ILVVDDEEGIRGLFKKVLKKEGYQCQVAENGEQALEIISKEKFELVISDIDMPVMNGIDL 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +++ D ++ + + N N ++KPF +L+ V R+L Sbjct: 74 SKKILAADYSDIIVMTGQVRSYHYDEIINIGVN-DFVTKPFSPSELILRVKRVL 126 >gi|220917498|ref|YP_002492802.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955352|gb|ACL65736.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 469 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D+ D R L + + GY+V + ++G A + E ++LTD+VMP MD Sbjct: 1 MRYRVLIVDDETDSREALAELTQRWGYDVQTASDGTEALRRAIEGHPDVILTDLVMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L R PD V+ +TG + Sbjct: 61 GLWLLRALRAELPDCPVVLLTGRGTI 86 >gi|206890474|ref|YP_002248031.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742412|gb|ACI21469.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 500 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D+ + L L GYEV+ NG A + ++ + ++L D++MP MDG E+ Sbjct: 8 ILCVDDEPQNLKLLQAILSPRGYEVLVAQNGFLALEILKNQNVDIVLLDVMMPGMDGYEV 67 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R+ E D L+ V+ IT A + LSKPF + +++ +N LL +K Sbjct: 68 CRKIKE-DETLRHIPVIMITALTAKEDRIRGIEAGTEEFLSKPFDVGEVLARINMLLRVK 126 >gi|3769370|gb|AAC64503.1| CheY [Blastochloris viridis] Length = 93 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 39/67 (58%) Query: 49 LLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 L+++D+VMPEMDG L R PDLKV+F++G+A A + + L KPF L+ Sbjct: 22 LVVSDVVMPEMDGPTLLRELRHGRPDLKVIFVSGYAEEAFRKNLPDGEQFAFLPKPFTLK 81 Query: 109 DLVNEVN 115 LV V Sbjct: 82 QLVEAVK 88 >gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1064 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED + + L + G+++ +G A+++ +EEPF L+L D+ MP M+G++ Sbjct: 944 KILLAEDVPENALLIEAYLEETGHQISVVGDGQQAFERFQEEPFDLVLMDLQMPVMNGLQ 1003 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKP 104 R RA E +K I A A+ D + A L+KP Sbjct: 1004 ATRHIRAWEQAQGVKRTPILALTAHAMKEDESKSLEAGCDGHLTKP 1049 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 42/77 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ + R + L + G VV C G +A +V E F L + D MP DG+ L Sbjct: 807 LLLVDDNANNREIYTELLQQEGARVVGCATGETAMQQVSEANFDLAVLDFHMPSEDGLTL 866 Query: 65 ARRATELDPDLKVMFIT 81 A R E+ P++ ++ ++ Sbjct: 867 AGRIQEMVPNMPLLMLS 883 >gi|329954319|ref|ZP_08295412.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328527847|gb|EGF54837.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 1362 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED++++R+++ ++L Y V+ NG A D E+ L+L+DI+MP MDG+EL Sbjct: 1109 VLLAEDNEEVRQYVKESLEPYFY-VLDVGNGKDALDLSLEKYPDLILSDIMMPGMDGLEL 1167 Query: 65 ARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + DL+ V+ +T + V + + + KPF + L+ +N +L Sbjct: 1168 CSRVKQ---DLQLGHIPVILMTAKSMVVHIKEGFSVGADDYIVKPFSMDVLICRINNIL 1223 >gi|317499546|ref|ZP_07957810.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893200|gb|EFV15418.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 224 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 6/112 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L YE ++ +G A +K+ +P ++L DI MP MD Sbjct: 1 MKYKILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIEMKP-DIILLDINMPRMD 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE+ R R+ L P ++F+T + ++KPF LR+L Sbjct: 60 GIEVCRLIRSKVLCP---ILFLTARVDEDDKINGLLSGGDDYITKPFSLREL 108 >gi|298247520|ref|ZP_06971325.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550179|gb|EFH84045.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + + L + Y + +NG A EP+ L++ D+++P+MDG + Sbjct: 2 RILIAEDDLFVGESMKTGLERQRYVIDLVDNGKQALALGGLEPYDLVILDVLLPDMDGFD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R E + ++F+T V + L+KPF R+L V LL Sbjct: 62 ICRTLREQGQTMPILFLTALDGVDYRVNGLDIGGDDYLTKPFAFRELEARVRALL 116 >gi|294776427|ref|ZP_06741905.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294449753|gb|EFG18275.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1432 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G+ +EVV+ +G S ++ R L++ D++MP M G Sbjct: 1172 RKVLIIEDDNDVREFLKEEVGQY-FEVVAEADGPSGLERARTYDADLIICDVLMPGMTGF 1230 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ + D + ++ +T ++ + + ++KPF + L+ +L+ Sbjct: 1231 EVTRKLKNDFDTSHIPIILLTAMSSAESHLEGVESGADAYITKPFSPKLLLARAFKLI 1288 >gi|237712594|ref|ZP_04543075.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229453915|gb|EEO59636.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1431 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G+ +EVV+ +G S ++ R L++ D++MP M G Sbjct: 1171 RKVLIIEDDNDVREFLKEEVGQY-FEVVAEADGPSGLERARTYDADLIICDVLMPGMTGF 1229 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ + D + ++ +T ++ + + ++KPF + L+ +L+ Sbjct: 1230 EVTRKLKNDFDTSHIPIILLTAMSSAESHLEGVESGADAYITKPFSPKLLLARAFKLI 1287 >gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14] gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14] Length = 236 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ +R +M ++ + A+ L D L+KPF R+L+ Sbjct: 61 GMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAVL 118 >gi|163732200|ref|ZP_02139646.1| sensory box histidine kinase/response regulator, putative [Roseobacter litoralis Och 149] gi|161394498|gb|EDQ18821.1| sensory box histidine kinase/response regulator, putative [Roseobacter litoralis Och 149] Length = 820 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + L+ +D++ R L + L +AG V +G A + + E+PF ++ DI MP +DGI Sbjct: 598 HRALVVDDNEINRMILCEMLQEAGLCVEEAADGIEAINLISEKPFDIVFLDISMPGIDGI 657 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRLLT 119 E R +L D + + A A D +A A +L KP H R++ ++ +LT Sbjct: 658 ETLNRIRQLKVDWRNLPAIAVTAHAAPKDHHAIMQASFLDLLVKPVHPREIQAKLASVLT 717 >gi|156740852|ref|YP_001430981.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] gi|156232180|gb|ABU56963.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] Length = 139 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 52/111 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD RR L GY V+ +G +A + ++ L++TD+ MP MDG++L Sbjct: 17 VLIVEDDAATRRLYKFLLANGGYVVLEAEDGIAAIEVLQRHHCDLVITDMNMPRMDGLDL 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R D+ ++ IT F + L+KPF +L V+ Sbjct: 77 IRAIRRDFGDIYIILITAFGTPDTQKQAMRLGANDYLAKPFDFEELERRVH 127 >gi|71906611|ref|YP_284198.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846232|gb|AAZ45728.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 994 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL +D+ ++ L + L + GY +++ + A+D + ++P ++++D MP+M G Sbjct: 860 QTLLLVDDEPNVLSSLTRLLRREGYAILTATSPTEAFDLLAKQPVQVVISDQRMPDMSGT 919 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF---HLRDLVNEVNRLL 118 E R +L P + +TG+ + D+ N K L+KP+ LR+ + E R++ Sbjct: 920 EFLSRVRQLYPATIRLVLTGYTDLQSVTDAINRGAIYKFLTKPWDDDQLREQIREAFRVV 979 Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDG-- 61 IL+ +D L + + AG N GA+A R EP L+L DI+MP+MDG Sbjct: 24 ILVVDDTPINLETLAEMVRHAGANARVANCGATALRYARLEPRPDLILLDIMMPDMDGHA 83 Query: 62 -IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E D+ V+F+T + A +SKP + L+ + L + Sbjct: 84 VLAELRRMPETR-DIPVIFVTALDDQSEEERGIREGAADYVSKPVKMSVLIARIRAHLEV 142 Query: 121 K 121 + Sbjct: 143 R 143 >gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 228 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + +P + ++ +T + D + KPF R+L + LL Sbjct: 64 TKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|319643185|ref|ZP_07997813.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317385089|gb|EFV66040.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1432 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G+ +EVV+ +G S ++ R L++ D++MP M G Sbjct: 1172 RKVLIIEDDNDVREFLKEEVGQY-FEVVAEADGPSGLERARTYDADLIICDVLMPGMTGF 1230 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ + D + ++ +T ++ + + ++KPF + L+ +L+ Sbjct: 1231 EVTRKLKNDFDTSHIPIILLTAMSSAESHLEGVESGADAYITKPFSPKLLLARAFKLI 1288 >gi|310821787|ref|YP_003954145.1| two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|309394859|gb|ADO72318.1| Two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] Length = 170 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-------ASAYDKVREEPFSLLLTDIVM 56 ++LLAEDD +MR L +AL ++G+ V +G + + E+ LL++D+ M Sbjct: 46 RLLLAEDDSEMRCMLSRALRRSGFHVTELRDGRETVSLLSHCATQTPEQMPHLLISDVRM 105 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 P G+E+ L V+ IT F + ++ A+V+ KPF L +L Sbjct: 106 PGCTGLEVLAHLRRSHSCLPVILITSFGDEETHEEARRLGAAQVIDKPFDLDELC 160 >gi|296445086|ref|ZP_06887047.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257507|gb|EFH04573.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 232 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 15/125 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +GA+A D +R P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEGEGYRVQTYTDGAAALDGLRANPPDLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIHKPFSQRLLVERVKAI 115 Query: 118 LTIKN 122 L N Sbjct: 116 LRRAN 120 >gi|295837871|ref|ZP_06824804.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74] gi|295826712|gb|EFG64995.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74] Length = 274 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-- 61 ++L+ +D+ ++ L AL G+E+ + +GA A +VR ++ D+V+P+MDG Sbjct: 39 RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 98 Query: 62 -IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++L RRA PD V+F+T A A + +SKPF L ++V + L+ Sbjct: 99 VLQLMRRA---QPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLI 153 >gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] Length = 243 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI L EDD+D+ L +L GYE++ +G A +++ + + ++ D+++P +DG+ Sbjct: 8 KKIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPGVDGL 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L V+ I+ + L+KPF + +L+ V L Sbjct: 68 EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALF 123 >gi|289582798|ref|YP_003481264.1| response regulator receiver modulated CheB methylesterase [Natrialba magadii ATCC 43099] gi|289532351|gb|ADD06702.1| response regulator receiver modulated CheB methylesterase [Natrialba magadii ATCC 43099] Length = 450 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 42/76 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D MR + AL +AGYEV + NG A D E +++ D+ MPEM+GIE Sbjct: 3 RVLVVDDSRFMRTVIGNALTEAGYEVETATNGVEAVDTAAEFDPAVVTMDVEMPEMNGIE 62 Query: 64 LARRATELDPDLKVMF 79 R +P L +M Sbjct: 63 AVERIMAQNPTLILML 78 >gi|261407689|ref|YP_003243930.1| two component AraC family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284152|gb|ACX66123.1| two component transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10] Length = 539 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +R + + + GYE + C NG A + V ++LTDI MP MDG Sbjct: 4 ILIVDDEPIVREGIRNRIQWSEHGYECIGDCENGRDALEAVTRHQPDVVLTDINMPYMDG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 +EL+R TE P K++ +TGF Sbjct: 64 LELSRHITERFPKTKIIILTGF 85 >gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 230 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L L + GYEV ++G SAY K +E+ F+ +L D+++PEMDG+ Sbjct: 3 KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + ++ +T + L D ++KPF R++V + Sbjct: 63 VLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADD-------YITKPFSPREVVARLKA 115 Query: 117 LL 118 +L Sbjct: 116 VL 117 >gi|91215802|ref|ZP_01252772.1| two component transcriptional regulator, winged helix family protein [Psychroflexus torquis ATCC 700755] gi|91186268|gb|EAS72641.1| two component transcriptional regulator, winged helix family protein [Psychroflexus torquis ATCC 700755] Length = 225 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 54/113 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+AED D+ + L K L + GY+ + NG V+ SL+L D +MP++ G Sbjct: 5 NYTILIAEDQVDIAKLLKKGLTEEGYQCLVVKNGEEVLKLVKHNSISLILLDWMMPKLKG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I++ ++ ++F+T + + + KPF+ +L+ + Sbjct: 65 IDVCKQLRSEHISTPIIFLTAKDTIEDTIEGLKSGANDYIKKPFNFEELLARI 117 >gi|37677310|ref|NP_937706.1| putative two-component response regulator [Vibrio vulnificus YJ016] gi|37201856|dbj|BAC97676.1| putative two-component response regulator [Vibrio vulnificus YJ016] Length = 409 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 55/114 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +I +D+ +R + +AL G EV+S N A + + +++TDI MP M+ Sbjct: 1 MNSQIYFIDDEPHIRDSVSQALMIEGVEVISFPNAVEALKHIDTQRAGVVITDIHMPVMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+ L + +P +V+ +TG+ V ++ L KPF L+ + Sbjct: 61 GLALLKELRSRNPHFQVIVLTGYGDVKTAVEAMKSGAYDFLEKPFSTDSLLKAI 114 >gi|317474497|ref|ZP_07933771.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316909178|gb|EFV30858.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1239 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 13/124 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ ED+ +R F++ L + + V + ++G A++ + E L+++D+VMP MDG Sbjct: 993 DMHILIVEDNHALREFMVHPL-REHFRVTTADDGQQAWEMMNELQPDLVVSDVVMPRMDG 1051 Query: 62 IELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 EL RR +T + V+ +T AL+ +N ++ L+KPF + L + + Sbjct: 1052 FELCRRIKSTYETSHIPVILLT-----ALSDKTNQLHGLELGADNYLTKPFDMALLASRI 1106 Query: 115 NRLL 118 ++ Sbjct: 1107 TSII 1110 >gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 219 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + L AGY +GA A D++ +E F L+L DI++PE+DG E Sbjct: 3 RILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEGFDLILLDIMLPEIDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L L ++ V+F+T A L+KPF + +L+ V +L Sbjct: 63 LMDYIRPL--EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVL 115 >gi|295086435|emb|CBK67958.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1339 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++R ++ K G + ++ NG A +++ ++ L+++DI+MPEMDG+ Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1142 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R+ + + +L + + A D+ N +A ++ KPF++ L V L+ Sbjct: 1143 LCRKIKQ-NVNLNHIPVILLTAKTREEDNLEGLNTGADAYIM-KPFNIEILQKTVENLIN 1200 Query: 120 IK 121 + Sbjct: 1201 TR 1202 >gi|237719759|ref|ZP_04550240.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451028|gb|EEO56819.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1348 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++R ++ K G + ++ NG A +++ ++ L+++DI+MPEMDG+ Sbjct: 1093 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1151 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R+ + + +L + + A D+ N +A ++ KPF++ L V L+ Sbjct: 1152 LCRKIKQ-NVNLNHIPVILLTAKTREEDNLEGLNTGADAYIM-KPFNIEILQKTVENLIN 1209 Query: 120 IK 121 + Sbjct: 1210 TR 1211 >gi|218131895|ref|ZP_03460699.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697] gi|217986198|gb|EEC52537.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697] Length = 1239 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 13/124 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ ED+ +R F++ L + + V + ++G A++ + E L+++D+VMP MDG Sbjct: 993 DMHILIVEDNHALREFMVHPL-REHFRVTTADDGQQAWEMMNELQPDLVVSDVVMPRMDG 1051 Query: 62 IELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 EL RR +T + V+ +T AL+ +N ++ L+KPF + L + + Sbjct: 1052 FELCRRIKSTYETSHIPVILLT-----ALSDKTNQLHGLELGADNYLTKPFDMALLASRI 1106 Query: 115 NRLL 118 ++ Sbjct: 1107 TSII 1110 >gi|52841408|ref|YP_095207.1| two component response regulator PilR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628519|gb|AAU27260.1| two component response regulator PilR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 442 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + K+L+ +D+ D+R L L + G + ++ + +++ +SL+LTD+ +P+ D Sbjct: 2 IKSKVLVIDDEPDIRELLTLTLSRMGLICDAVSDFKQGIEHIKQNYYSLVLTDMRLPDGD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + + P L V IT + V ++ +SKP L+ L V L++ Sbjct: 62 GIEIVKFIQKYKPQLPVAVITAYGNVEGAVNTLKAGAFDYVSKPVDLKMLRELVKTALSM 121 Query: 121 KN 122 +N Sbjct: 122 QN 123 >gi|87306977|ref|ZP_01089123.1| probable two-component system regulatory protein [Blastopirellula marina DSM 3645] gi|87290350|gb|EAQ82238.1| probable two-component system regulatory protein [Blastopirellula marina DSM 3645] Length = 294 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 6 LLAEDDDDMRRFLIKAL--GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 LL DD + R L+ L + Y+V +NG A +++ + ++TD+ MPEMDG++ Sbjct: 4 LLVVDDAAVDRKLVGGLLESQTNYQVEYASNGLDALEQIEAKLPLAVITDLQMPEMDGMQ 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + EL P + + ITGF + + + A +SK R+L + V +L I + Sbjct: 64 LVTQMRELYPTVPAILITGFGSEDIALQALLLGAADYVSKDTLARELAHSVESVLQISD 122 >gi|298384187|ref|ZP_06993747.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 1_1_14] gi|298262466|gb|EFI05330.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 1_1_14] Length = 1312 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ ++R +LI++ +V + +N SA + R++ S++++D++MP+MDG Sbjct: 1054 KTILIVEDEKELREYLIESFTGTFKKVYAADNAISALETCRKKQPSIIVSDVMMPQMDGF 1113 Query: 63 ELARRATELDPDLKVMFI 80 EL R ++ D+++ I Sbjct: 1114 ELCR---QIKNDIRISHI 1128 >gi|266624585|ref|ZP_06117520.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM 13479] gi|288863554|gb|EFC95852.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM 13479] Length = 511 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +ILL +D+ R RFLI+ K VV NG A + ++E P +L TD+ MP D Sbjct: 3 RILLVDDEAQERDGIRFLIEKY-KLPLTVVEAQNGQKALEYLKEHPVDILFTDVKMPYKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ELA+ + + ++++ + + + L KP L + + +++++ Sbjct: 62 GLELAKETFQFNQSIRIVIFSAYGEFEYAKRAMEANAVDYLLKPIELDEFLKVMHKVI 119 >gi|242212075|ref|XP_002471873.1| hypothetical histidine kinase [Postia placenta Mad-698-R] gi|220729061|gb|EED82942.1| hypothetical histidine kinase [Postia placenta Mad-698-R] Length = 1151 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDIVMPEM 59 IL+AED+ ++ +K L K G++V NG+ A D R PF ++L D+ MP M Sbjct: 1007 ILIAEDNLVNQKLAVKILEKYGHQVEIAENGSLAVDAFKARIQRNRPFDIILMDVSMPFM 1066 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E RA E L + I A A+ D A + ++KP DL+N + Sbjct: 1067 GGMEATELIRAYETSHGLDPVPIIALTAHAMIGDRERCLQAGMDDHITKPLRRSDLINAI 1126 Query: 115 NRL 117 N+L Sbjct: 1127 NKL 1129 >gi|242277861|ref|YP_002989990.1| ATPase AAA [Desulfovibrio salexigens DSM 2638] gi|242120755|gb|ACS78451.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] Length = 682 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++A+D+ R L G+ V + NG A + EEP +++TD+ M MDG+EL Sbjct: 133 LIIADDEVIARENLSIIFEHEGFAVRTVGNGLEAVAAMEEEPADIVITDLKMDGMDGLEL 192 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 PD V+ +TG+A V ++ + L KP +L L V LL+ Sbjct: 193 LEVLRNRWPDTGVIMLTGYATVKTAVEAMKNGADQYLGKPVNLTRLREHVQDLLS 247 >gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 226 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 50/103 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ R L AL AGY V +G A+ EP+ +++ D+ +P++DG+ Sbjct: 2 RVLLVEDDADLSRQLKGALADAGYAVDHAADGEEAWFLGDTEPYDVIVLDLGLPKIDGVS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 + R V+ +T A + L+KPFH Sbjct: 62 VLERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFH 104 >gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 1018 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 38/60 (63%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ +R +++ L K G+ V +G A D + EPF ++L D+ MPEMDG E Sbjct: 764 RVLVAEDNPVNQRVVLRLLEKFGHAVTMTADGRQAVDALSREPFDIVLMDVQMPEMDGFE 823 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPEM 59 IL+ +D+ RR L + + G + +G D++R +PF L+L D +MP + Sbjct: 612 ILIVDDNATNRRVLAETVRHWGAKPTCSASGPEGLDELRWAAATGKPFPLVLLDGMMPGL 671 Query: 60 DGIELARR 67 DG A R Sbjct: 672 DGFSTAER 679 >gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 11/126 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ ED+ + RFL L GY+V ++G + E F L++ DI++P M+G Sbjct: 3 GKKILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIMLPYMNG 62 Query: 62 IELARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 IE+ R+ + ++ ++ +T + L+ +N ++KPF + +L+ + Sbjct: 63 IEVLRKIRH-NSEVPIIMLTAKDEVMDKVIGLDMGAN-----DYITKPFAIEELLARIRS 116 Query: 117 LLTIKN 122 L KN Sbjct: 117 ALKTKN 122 >gi|67925981|ref|ZP_00519251.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67852170|gb|EAM47659.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 174 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD +R L + L + GY+VV NG K +E ++++ D VMP + G++ Sbjct: 3 QILLIDDDSTIRLLLERTLKRQGYDVVCAGNGEEGLVKAKELHPAMIICDWVMPGVSGLQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 + R+ L PDL F ++ D +A L KP + + + + Sbjct: 63 VCRQVKSL-PDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARI 115 >gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++++ + L K GY V+ ++G A V + LL+ DI+MP+MDG E+ Sbjct: 6 ILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E ++ ++F++ + ++KPF +LV VN L Sbjct: 66 TRRIRE-QHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQL 118 >gi|309789495|ref|ZP_07684078.1| response regulator receiver protein [Oscillochloris trichoides DG6] gi|308228461|gb|EFO82106.1| response regulator receiver protein [Oscillochloris trichoides DG6] Length = 138 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D R + L + GY V + +G A D + L+LTD+ MP+MDG+EL Sbjct: 4 ILIVDDYAPNHRLMSFVLEQHGYAVQAVIDGRQALDSLEYTHVDLVLTDLTMPKMDGLEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTIK 121 R DP + I A D V L+KP DLV EV RLL + Sbjct: 64 T-RTLRADPRFAALPIIIVTASTREQDHVRASGVGVNAFLTKPVDSEDLVAEVARLLQLS 122 >gi|298485851|ref|ZP_07003928.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159629|gb|EFI00673.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 245 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPHED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L + R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] Length = 236 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +AL G+E + +G A K +++ D+ MP MDG+E Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R DP+L V+F+T AVA ++KPF L ++ V LL Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLL 126 >gi|322419477|ref|YP_004198700.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320125864|gb|ADW13424.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 455 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPF--SLLLTDIVMPE 58 +KIL+ +D++ + +L K L G+ V + N GA +++E +P LLL D+ MP+ Sbjct: 3 QEKILICDDEEGILIYLKKLLQTQGFLVETFNGGAQLLRRLKEGDPTDAELLLQDVRMPD 62 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 MDG+ + + +L P L V+ +T F + ++ ++KPF Sbjct: 63 MDGVSVLQEVKKLRPSLPVVIMTAFGTIDAAVEAIKLGAYDYVTKPF 109 >gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 958 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ ED+ + + K L K G++V NG A +K++E+ +SL++ D+ MP MDG Sbjct: 696 SKEILVVEDNKANQVLIKKMLEKVGFKVDVAGNGKEALEKIKEKTYSLIIMDMQMPVMDG 755 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R+ E + V+ +T S L KP ++L++ + L I+ Sbjct: 756 YTATRKIREKGLKVPVIALTAHTLRGDEAKSLEAGCDGYLGKPVKQKELIDAIVYFLRIQ 815 >gi|198282748|ref|YP_002219069.1| two component sigma-54 specific Fis family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218668014|ref|YP_002424943.1| sigma-54 dependent DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247269|gb|ACH82862.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520227|gb|ACK80813.1| sigma-54 dependent DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC 23270] Length = 461 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 6/109 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +DD D R L L GY V++ ++ ++ L++TD+ MP MDG+ + Sbjct: 8 ILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMPGMDGMAV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 LDPDL V+ +T ++ P++ A A+ LSKPF +L Sbjct: 68 LETVQALDPDLPVILLTAHGSI---PNAVAAMRAQAFGYLSKPFSNEEL 113 >gi|91217435|ref|ZP_01254394.1| response regulator [Psychroflexus torquis ATCC 700755] gi|91184320|gb|EAS70704.1| response regulator [Psychroflexus torquis ATCC 700755] Length = 516 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L A+D+ D+ + I L K YEV +C +G+ A D+V++ F ++ D MP + G+E Sbjct: 5 KVLWADDEIDLLKPHILFLEKKSYEVTTCKSGSEAVDEVKQNRFDIVFLDENMPGLTGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + DL V+ IT + ++ K A L KP VN LL++K Sbjct: 65 TLHEIKAIRTDLPVIMITKSEEEYIMEEAIGSKIADYLIKP------VNPNQILLSLK 116 >gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 230 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ EDD +R L L K GY++ +G A R SL++ D+++P MDG Sbjct: 3 EHKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R + + ++ +T ++ + LSKPF +++L+ + LL Sbjct: 63 FELC-RLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALL 118 >gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] Length = 715 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED ++ + L K G++VV NNG A + F L+L D+ MPEMDG+E Sbjct: 453 RILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAVAVFDRDRFDLVLMDVQMPEMDGLE 512 Query: 64 --LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 A RA E + D V I A A+ D A + +SKP +L N Sbjct: 513 ATAAVRAKEANSDRHVPII-ALTAHAMKGDREQCLEAGMDGYVSKPIRAPELFN 565 >gi|307944444|ref|ZP_07659784.1| PAS domain protein [Roseibium sp. TrichSKD4] gi|307772193|gb|EFO31414.1| PAS domain protein [Roseibium sp. TrichSKD4] Length = 655 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 +LL ED+ D+ L + GY V+ A E P S +L+DIVMP +M+G+ Sbjct: 538 VLLVEDNPDVAAVLAVQVQDLGYSVLVAEGAEDARSLASELPDLSGVLSDIVMPGQMNGL 597 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LAR+ P L + +TG+A + + D++ VL KPF L Sbjct: 598 SLARKIKAARPKLGIALMTGYANWSSDDDNSNHCEFPVLPKPFESESL 645 >gi|295136280|ref|YP_003586956.1| two-component response transcriptional regulator [Zunongwangia profunda SM-A87] gi|294984295|gb|ADF54760.1| two-component response transcriptional regulator [Zunongwangia profunda SM-A87] Length = 434 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 49/97 (50%) Query: 22 LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 L K GYE C +G A + F+L+LTD+ +P+ DG+E+ + +P +V+ +T Sbjct: 6 LSKRGYEAALCFSGGDALKLIANSEFNLVLTDVRLPDYDGLEILKEVKSNNPSTQVIVMT 65 Query: 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A +++ + +SKPF ++ + L Sbjct: 66 SYAEISMAVQAMKDGAFDYVSKPFRPESILQTIENAL 102 >gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 247 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L ++L GYEV S +GA A D V + +++ D++MP +DG+E Sbjct: 2 RVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRDRPDIVVLDVMMPRVDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR DL V+ +T +A L KPF L +L + L Sbjct: 62 ACRRLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRAL 115 >gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 941 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D R ++ L G+E+ NG A K SL+L D+VMP MDG+ Sbjct: 727 KTILVVDDVAANRAVMVDMLAPLGFEMAEAGNGLEALRKAEALRPSLILMDVVMPGMDGL 786 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E RR + P+ + I +A A D S A +LSKP L L++++ LL Sbjct: 787 EATRRLRAM-PEFARLPIVAVSAGASGSDAAKSLAAGANAMLSKPVDLSVLLSQIAVLLN 845 Query: 120 IK 121 ++ Sbjct: 846 LE 847 >gi|262166286|ref|ZP_06034023.1| chemotaxis protein CheV [Vibrio mimicus VM223] gi|262026002|gb|EEY44670.1| chemotaxis protein CheV [Vibrio mimicus VM223] Length = 247 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK----VREEP----FSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV+S +G AY+K V++ P SL+++DI Sbjct: 121 RRILIADDSSVARKQVQRAIESIGFEVISTKDGKDAYEKLLEMVKDGPIRNQISLVISDI 180 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 181 EMPEMDGYTLTAEIRRHNEL-KDLYVILHSSLSGV 214 >gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces scabiei 87.22] gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22] Length = 247 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++L+ ED+ +R L L GYEV S + G SA +V L+L D+++P++DG Sbjct: 11 RHRLLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVMLPDLDG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR + ++F+T + +SKPF + +++ + +L Sbjct: 71 FEVTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAIL 127 >gi|255530497|ref|YP_003090869.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343481|gb|ACU02807.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 528 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+AED+ + +IK L ++ NG A DK+RE+ + L+L D MP M+G Sbjct: 406 NLNILVAEDNPINKFLIIKILQNWEVQLEVVENGQQALDKLREKHYDLILMDTFMPVMNG 465 Query: 62 IELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFH 106 +E R E P + + I F+A L+ D A V+SKPF Sbjct: 466 LEAIRLIREGYAPGKENIPIITFSAAVLDTDKETAIAAGANDVISKPFE 514 >gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L ++L GY++ +G A D + +E L++ D++MP+MDG+E Sbjct: 2 KIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ D A +A L KPF L +L+ V LL Sbjct: 62 VCRHLRSHGDDRPILVLTARDGVS---DRVAGLDAGADDYLPKPFALEELLARVRSLL 116 >gi|182412755|ref|YP_001817821.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839969|gb|ACB74221.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 760 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 + LL +DDD +R L L +GY V+ ++ A A L+LTD++M + D Sbjct: 635 ETFLLVDDDDSVRNVLSTVLTASGYRVLKASSAAEAERVFSAHHAEIQLVLTDVMMADGD 694 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + RR +L + ++ ++G A A +L+KP L+ V LT Sbjct: 695 GFSVVRRLRQLGAQVPMLIMSGLAGAGNYEHQAAALKVPLLAKPLTREALLRAVQTALTG 754 Query: 121 K 121 K Sbjct: 755 K 755 >gi|218781110|ref|YP_002432428.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762494|gb|ACL04960.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 738 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 +ILL +D+ + + + L + GYE V+ +G A + E+ F LL+TD MP G Sbjct: 619 RILLVDDEPSLVQMTKQMLNRLGYETVTAFDGKEAIKTLESAEKRFDLLVTDYSMPGFTG 678 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +LA E P L V+ TG++ ++ + +LSKP +LR L RL Sbjct: 679 DQLALYVQEKFPGLPVVLCTGYSDKVSRENAAKMGISAMLSKPVNLRQLALIAYRL 734 >gi|221134851|ref|ZP_03561154.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. HTCC2999] Length = 551 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R L + L G + NGA A D ++ F ++L+DI MP +DG+ L Sbjct: 431 ILVVEDNMINRAILKEQLEACGASITEAENGAEALDLIKVNHFDIVLSDIAMPILDGVGL 490 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVN 112 + + +P L ++ I+G L+ ++ A +A V+SKP++ L + Sbjct: 491 IKAVRQFEPQLIMVAISG---NTLHNEATAYYDAGYNYVMSKPYNTEKLYD 538 >gi|78186805|ref|YP_374848.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166707|gb|ABB23805.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 257 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +I++ EDD D R LI+ L GYEVV + Y KV E P L++ D+ +P+ +G+ Sbjct: 21 HRIIVVEDDLDFRESLIETLSLCGYEVVGARSALEFYQKVAETPCELVILDLGLPDQNGV 80 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 LA + D++++ +T A+ Sbjct: 81 VLAEYIRN-NTDMRIVVLTARGAL 103 >gi|332800435|ref|YP_004461934.1| response regulator receiver modulated CheW protein [Tepidanaerobacter sp. Re1] gi|332698170|gb|AEE92627.1| response regulator receiver modulated CheW protein [Tepidanaerobacter sp. Re1] Length = 304 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 20/133 (15%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYD---KVRE-------EPFSLL 50 ++ IL+ +D + R + L KAGY+ +++ +NG A+D K++E E S + Sbjct: 174 HKPILIVDDSQTLSRMIEDCLTKAGYQDLITASNGKEAWDILQKIKEQDDKPPNELLSCV 233 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPF 105 ++DI MP+MDG L +R E DP L + + F+ +L D K KV +SKP Sbjct: 234 ISDIEMPQMDGHHLTKRIKE-DPVLHTIPVILFS--SLISDDMKQKGEKVGADAQISKP- 289 Query: 106 HLRDLVNEVNRLL 118 + +L+N ++ L+ Sbjct: 290 EIVNLINVIDGLI 302 >gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 242 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + +G +A R+ L++ D+++P+MDG Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGFT 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E + V+F+T A ++KPF L ++V + +L Sbjct: 71 VTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAIL 125 >gi|329960643|ref|ZP_08298986.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328532516|gb|EGF59310.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 1317 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED +M+ F++K L + Y V++ NGA A ++E +L+++DI+MPEMDG+EL Sbjct: 1073 LLVVEDSLEMQAFVVKQL-SSEYRVLAAVNGAEALKILKEYTVNLVISDIMMPEMDGLEL 1131 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ELD + ++ +T + + + KPF + L V LL Sbjct: 1132 CEHLKSELDYSHIPIILLTAKTTLQAKIEGMKQGADAYIEKPFSVEYLKVCVANLL 1187 >gi|325291487|ref|YP_004277351.1| two component response regulator [Agrobacterium sp. H13-3] gi|325059340|gb|ADY63031.1| two component response regulator [Agrobacterium sp. H13-3] Length = 249 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I L +DD ++ + AL GY V + +GASA D + P L + DI MP MDG+ Sbjct: 9 QTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARPPQLAIFDIKMPRMDGM 68 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR + D+ V+F+T + + D ++KPF R LV V Sbjct: 69 ELLRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVK 120 Query: 116 RLL 118 +L Sbjct: 121 AIL 123 >gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 909 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED++ + L Y + NGA A +KVREE F L+L D+ MP M G+E Sbjct: 797 KILIAEDNESNYSLVQHIL--KNYHLTHVQNGAEAVNKVREEEFDLVLMDMKMPVMGGLE 854 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLV 111 R+ E + + ++ +T A A + D + +A + L+KP L+ Sbjct: 855 ATRKIREFNNRIPIIALT---ANAFDADRISALDAGCNEFLAKPLKKSQLL 902 >gi|256839584|ref|ZP_05545093.1| nitrogen regulation protein NR(I) [Parabacteroides sp. D13] gi|256738514|gb|EEU51839.1| nitrogen regulation protein NR(I) [Parabacteroides sp. D13] Length = 441 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+ V S ++ + A ++ EE F L+++D+ +P+ DGI+L Sbjct: 6 ILIVEDDITFSLMLTTWLGKKGFVVRSSSSVSDAKRRLGEEAFDLVISDLRLPDSDGIDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P L ++ +T +A + + A ++KP + +L+ ++ L+ ++ Sbjct: 66 LKWLKSTHPSLPLIMMTSYAEIQTAVQAMKLGAADYIAKPLNPDELLGKIKELVYVE 122 >gi|255505650|ref|ZP_05347378.3| putative response regulator receiver domain protein [Bryantella formatexigens DSM 14469] gi|255266597|gb|EET59802.1| putative response regulator receiver domain protein [Bryantella formatexigens DSM 14469] Length = 536 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMP 57 MN +LL +D+ ++ A+ G + S + +G SA D ++ P +L++DI MP Sbjct: 4 MNMNVLLVDDNYICVEGILHAISWEGLGISSVHAVYDGVSALDYLKSHPVHILISDISMP 63 Query: 58 EMDGIELARRATELDPDLKVMFITGF 83 M G+ L+ +A L+P +K++ I+ + Sbjct: 64 GMSGLALSEKALALNPSIKIILISAY 89 >gi|168245130|ref|ZP_02670062.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448874|ref|YP_002048159.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407178|gb|ACF67397.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336107|gb|EDZ22871.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 441 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 45/82 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY VV +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVVLAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|58038744|ref|YP_190708.1| sensory transduction protein kinase [Gluconobacter oxydans 621H] gi|58001158|gb|AAW60052.1| Sensory Transduction Protein Kinase [Gluconobacter oxydans 621H] Length = 667 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 K+L+ +D+ +R L + G+EV + + A A +V PF L + D+ MP+ DG+ Sbjct: 549 KVLVLDDEAPVRMVTAGFLAQDGHEVTAVASLADALKRVDPASPFELAIIDMRMPDHDGL 608 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 A + P L+V+FI+G D AP+N +L KPF Sbjct: 609 ACAEALLKAVPGLRVLFISGH-----TDDMPAPENGLLLPKPF 646 >gi|327480563|gb|AEA83873.1| sensor/response regulator hybrid [Pseudomonas stutzeri DSM 4166] Length = 993 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LLA DDD++ F L AG+ V++ + A D ++ +L+TD MP M G +L Sbjct: 883 LLAVDDDELVLFSTAGILEAAGHRVLTARSAGEALDLLQVNQVDILITDHAMPLMSGAQL 942 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A E P L ++ ++G+A + P + L+KPF +L++ + +L Sbjct: 943 AAVVRETRPQLPILLVSGYAEL---PSTAPALPLHRLAKPFSQDELLDAIEQL 992 >gi|255530119|ref|YP_003090491.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255343103|gb|ACU02429.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 231 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ILL EDD ++ L L K ++VV C +G ++ F L + D++MP+ DG Sbjct: 2 KRILLVEDDPNLGLLLQDYLQLKGKFDVVLCADGEEGLKAFSKQEFDLCILDVMMPKKDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + +++ ++ ++F T A + + ++KPF + +L+ +N LL Sbjct: 62 FTLGKEIRKINQEVPIIFATAKAMMEDKASAYDLGGDDYITKPFRIEELLLRINALL 118 >gi|227874892|ref|ZP_03993045.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|227844667|gb|EEJ54823.1| response regulator [Mobiluncus mulieris ATCC 35243] Length = 229 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I EDD ++R ++ LG G+E C + + ++ + P L+L DI++P DGI++ Sbjct: 2 IYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTPPELVLLDIMLPGTDGIQI 61 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR A D+ ++ +T A S ++KPF + +LV+ V +L Sbjct: 62 LRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVL 117 >gi|218678226|ref|ZP_03526123.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 248 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL ED++ +RR + L GY V +G A + E ++++D+VMPEMDG Sbjct: 158 ILLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALSIMEELDGKVDIVVSDVVMPEMDGP 217 Query: 63 ELARRATELDPDLKVMFITGFA 84 L R + PD+K +F++G+A Sbjct: 218 TLLRELRKSYPDMKFIFVSGYA 239 >gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +AL G+E + +G A K +++ D+ MP MDG+E Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R DP+L V+F+T AVA ++KPF L ++ V LL Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLL 126 >gi|170742059|ref|YP_001770714.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168196333|gb|ACA18280.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1022 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + +G S ++ LL+TD+ +P M+ Sbjct: 901 ETVLIVDDEPSVRMLVTEVLEDLGYVAIEAADGPSGLKVLQSGARIDLLITDVGLPGGMN 960 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ++A A PDL+V+FITG+A A +L+KPF + L + + L++ Sbjct: 961 GRQVADAARVTRPDLRVLFITGYAESAAIGRGLQEAGMAILTKPFVMDTLASRIKDLIS 1019 >gi|115376270|ref|ZP_01463510.1| PilR2 [Stigmatella aurantiaca DW4/3-1] gi|310823672|ref|YP_003956030.1| pilin regulatory protein PilR [Stigmatella aurantiaca DW4/3-1] gi|115366695|gb|EAU65690.1| PilR2 [Stigmatella aurantiaca DW4/3-1] gi|309396744|gb|ADO74203.1| PilR protein (Sigma-54 dependent DNA-binding response regulator) [Stigmatella aurantiaca DW4/3-1] Length = 467 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 54/109 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+A+D+ +R L L GYEV S +G A ++ + +LL D+ MP DG+ Sbjct: 5 RSILVADDEPSIRHVLTLVLTDHGYEVRSVADGEEALRELSARSYDVLLCDVRMPRRDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + R+A P L V+ ++ + + ++ + KPF ++V Sbjct: 65 SVLRQALAEHPGLTVLVMSAYGSQEQALEAVGAGAYDYVQKPFKPEEIV 113 >gi|89899064|ref|YP_521535.1| Fis family two component sigma-54 specific transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343801|gb|ABD68004.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodoferax ferrireducens T118] Length = 467 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R+ L A+ KAGY V N A + F + L DI MP+ +GIEL Sbjct: 6 VLVVDDEPALRQILAAAVIKAGYSVEQANGVKQAATMLSRGDFDVALCDIKMPDGNGIEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R + + +TGFA++ ++ + ++KP ++ + ++++ Sbjct: 66 VRNCRAAGIETTFIMVTGFASIETAVEALQAGASDYITKPVRYEEVAHRLSQI 118 >gi|39996106|ref|NP_952057.1| nitrogen regulation protein NR(I) [Geobacter sulfurreducens PCA] gi|39982871|gb|AAR34330.1| nitrogen regulation protein NR(I) [Geobacter sulfurreducens PCA] gi|298505122|gb|ADI83845.1| nitrogen fixation master sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 481 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 55/104 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D++ MR L KAL K G+ V +G A ++ + L + DI MP G+E Sbjct: 5 RILVADDEESMRWVLSKALRKKGFTVDLARDGEEALRLIQSNEYDLAILDIKMPGFTGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 L + EL DL ++ +T A++ ++ ++KPF L Sbjct: 65 LLDKVRELKHDLLMVIMTAEASMKNAVEAMKRGAYDYITKPFDL 108 >gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 908 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED++ + L Y + NGA A +KVREE F L+L D+ MP M G+E Sbjct: 796 KILIAEDNESNYSLVQHIL--KSYHLTHVQNGAEAVNKVREEEFDLVLMDMKMPVMGGLE 853 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLV 111 R+ E + + ++ +T A A + D + +A + L+KP L+ Sbjct: 854 ATRKIREFNNRIPIIALT---ANAFDADRISALDAGCNEFLAKPLKKSQLL 901 >gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 263 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ ++L+ EDD + FL +AL +AG+++ NG ++ +E + ++ D+++P MD Sbjct: 30 ISMRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMD 89 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ ++ V+ ++ +V+ L+KPF L +L+ V L+ Sbjct: 90 GLEILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLI 147 >gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 238 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ L L + GYEV +G A D RE ++L D+++P MD Sbjct: 1 MAEKILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G EL RR + + + V+ +T V L ++ ++KPF +R+L+ V Sbjct: 61 GFELCRRLRQ-EMNTPVLMLTARTEEIDRVVGLEVGAD-----DYMTKPFSMRELLARVK 114 Query: 116 RLL 118 +L Sbjct: 115 AML 117 >gi|303242726|ref|ZP_07329197.1| response regulator receiver modulated metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] gi|302589737|gb|EFL59514.1| response regulator receiver modulated metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] Length = 511 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +DD+ + L + + GYE + NN A + +R E + LL+ D +M + G Sbjct: 13 KIIVVDDDNGILDSLSVIIKRLGYEYIGINNPLDAIESIRNEHYDLLVLDFLMDPIQGDA 72 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 + R E D DL ++ +TG+ VA Sbjct: 73 VVERIREFDTDLYILLLTGYKDVA 96 >gi|260585069|ref|ZP_05852811.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] gi|260157265|gb|EEW92339.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] Length = 244 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 7/87 (8%) Query: 5 ILLAEDDDDMRRFLI-----KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +L+ ED+ +RR L K LG + V NG A++ +++ +LLTDI MP+M Sbjct: 4 LLIVEDESLVRRGLTSLIDYKQLGISN--VQEAENGKQAWEIIQQHQPDILLTDINMPQM 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAV 86 DGI LA++ P ++F+TG+ V Sbjct: 62 DGITLAQQVKLHYPHTHIVFLTGYDYV 88 >gi|253577054|ref|ZP_04854376.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843548|gb|EES71574.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 524 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEV---VSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +LL +D+ +L + + +G + + NNG +A + +E L+L+DI MP Sbjct: 1 MEINVLLVDDEAVDLEWLRRRVQGSGLNLQVAATANNGFNALKAMEQERIDLILSDIRMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITG 82 M GIE AR+A + P +K++FI+G Sbjct: 61 IMSGIEFARKAKAIQPSVKIVFISG 85 >gi|239905794|ref|YP_002952533.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239795658|dbj|BAH74647.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 125 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +DD +R + L AGY V+ +G A + +P L++ DI MPEMDG+ Sbjct: 2 KSVLVVDDDPSIRALIRLYLESAGYAVIEAGDGKRAMAALDGQPVDLVILDIFMPEMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 E+ + +VM I+G +A + ++ +A VL KPF L+++V L+ Sbjct: 62 EVLQVLRGHCQTCRVMAISGGSAKIGMDLLGHATIFGADAVLEKPFGEVTLLDKVTALI 120 >gi|171060259|ref|YP_001792608.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777704|gb|ACB35843.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 652 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 7/102 (6%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGIE 63 LL EDD +R+ + L GY V+ NGA A + P +LLLTD+VMP +DG + Sbjct: 542 LLVEDDAAVRQVVRHNLLALGYAVLEAGNGAEARQMLAHAPGITLLLTDVVMPGGVDGRD 601 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 LAR A +L +V+ ++G A P + +L KPF Sbjct: 602 LAREARDLHHVPRVLLMSGHA-----PARAEAGDLPLLRKPF 638 >gi|159897116|ref|YP_001543363.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890155|gb|ABX03235.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] Length = 121 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I + +DD ++ + AL + GYEVV NNG ++ L+++DI+MPEMD Sbjct: 1 MAKTIFIMDDDLALQMVMEIALREVGYEVVLANNGVEGIAQLETLKPDLIISDIMMPEMD 60 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E + E D + ++ +T D + A +L KPF + ++ +N ++ Sbjct: 61 GVEAFNQIRERIQDEGIPMVIVTALNRKPWFSDLEE-EGAVILQKPFEVDTFIDLINTMV 119 Query: 119 T 119 + Sbjct: 120 S 120 >gi|30248361|ref|NP_840431.1| response regulator [Nitrosomonas europaea ATCC 19718] gi|30138247|emb|CAD84255.1| possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding [Nitrosomonas europaea ATCC 19718] Length = 223 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + + + L AGY V N ASA +REE F L + DI +P++DG+ Sbjct: 2 RILVVEDDSLVASGIKQGLTNAGYTVDVARNAASAERHLREENFDLAVVDIGLPDIDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 L +R L V+ +T ++ D+ A + ++KPF L +L+ + L+ Sbjct: 62 LVQRLRHRKMCLPVLVLTARGSM---EDTIAGLDIGADDYMTKPFRLPELIARIRALI 116 >gi|320354070|ref|YP_004195409.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320122572|gb|ADW18118.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 118 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 47/81 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL +D++ ++ + GY V S NG+ A K RE P L++ DI MP M+GI Sbjct: 4 KRILLVDDEESIQLLYREEFEDEGYIVDSAYNGSEALAKFRENPPDLVVLDINMPGMNGI 63 Query: 63 ELARRATELDPDLKVMFITGF 83 E+ R+ EL +L V+ + + Sbjct: 64 EVLRQMKELQANLPVILSSAY 84 >gi|317403017|gb|EFV83555.1| nitrogen regulation protein NR(I) [Achromobacter xylosoxidans C54] Length = 500 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 57/116 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + + + +DD +R L KAL +AG S + A + + E L++DI MP +G+ Sbjct: 2 KPVWIVDDDQAIRWVLEKALARAGVPTRSFSQAADVLEALSHETPVALVSDIRMPGGNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R+ E P L V+ +T FA + + L+KPF + + V + R + Sbjct: 62 ELLRQLKERHPGLPVIVMTAFADLDSTVSAFQGGAFDYLAKPFDVNEAVALIQRAM 117 >gi|290513208|ref|ZP_06552569.1| two-component system, NtrC family, response regulator HydG [Klebsiella sp. 1_1_55] gi|289774305|gb|EFD82312.1| two-component system, NtrC family, response regulator HydG [Klebsiella sp. 1_1_55] Length = 443 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD L L GY+V +NG A +++ ++ F L+L DI M EMDGI Sbjct: 7 QILVVDDDISHCTILQALLRGWGYQVALAHNGLQALEQIHQQVFDLVLCDIRMAEMDGIA 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P + V+ +T F++V ++ L KP L Sbjct: 67 TLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDFDTL 113 >gi|283852975|ref|ZP_06370234.1| response regulator receiver modulated CheW protein [Desulfovibrio sp. FW1012B] gi|283571665|gb|EFC19666.1| response regulator receiver modulated CheW protein [Desulfovibrio sp. FW1012B] Length = 326 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 14/96 (14%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR---------EEPFS----LL 50 K L+A+D +RR + +L KAG+EV NG A+D++ E+P + +L Sbjct: 190 KALIADDSTTIRRMIGSSLEKAGFEVTRTINGRIAWDQLMEWKAAAAAGEQPITDFVHIL 249 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 ++DI MP MDG L R+ E DP LK + + F+++ Sbjct: 250 VSDIEMPAMDGHSLTRKVKE-DPVLKKLPVILFSSL 284 >gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRGEGLAVPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1029 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 41/65 (63%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+AED+D RR + + L G + + +G A ++ R+ +SLLLTD+ MP MDG Sbjct: 766 RRILVAEDNDINRRVIARQLALLGLQCDTAEDGFEALERWRQGQYSLLLTDLHMPGMDGY 825 Query: 63 ELARR 67 EL R Sbjct: 826 ELTAR 830 >gi|221106318|ref|XP_002170660.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 697 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ ED+ +RR L K L + Y V +G + V+ E F L+L DI MP+MDG+ Sbjct: 231 ILMYEDEAPIRRVLNKILSEESDTYLVQEAEDGLQGIELVKNEDFDLILCDIKMPKMDGV 290 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ ++ P++ ++ I+G + ++ +SKP L L+N V L Sbjct: 291 EVLEAIKKIKPEIPMVMISGHGDLETAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 346 >gi|217077821|ref|YP_002335539.1| response regulator receiver [Thermosipho africanus TCF52B] gi|217037676|gb|ACJ76198.1| response regulator receiver [Thermosipho africanus TCF52B] Length = 217 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDDD +RR L V +C G A + +E +++ DI++P++DG E Sbjct: 2 KILVVEDDDKLRRLLELEFKHEKCTVKTCEYGEDAIIEYQEFKPDVVVLDIMLPDIDGTE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +A++ +LDP ++ +T + + + KPF +L V + KN Sbjct: 62 VAKKIRKLDPSAGIIMLTALSEKKNKLEGFESGADDYVVKPFDFEELFARVKAIARRKN 120 >gi|154173869|ref|YP_001407525.1| two component transcriptional regulator [Campylobacter curvus 525.92] gi|112803785|gb|EAU01129.1| two component transcriptional regulator, winged helix family [Campylobacter curvus 525.92] Length = 230 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L EDD++++ + + E+ + NG + L+++DI M M GI + Sbjct: 14 VLFVEDDENLKNIVKSLIAPYINEIYTAGNGEEGLELFNANKIDLIISDINMAHMSGISM 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 A+ ++DP + ++FIT + +S + K++ L KPF R L+ ++ L+ I N Sbjct: 74 AQEIRKIDPAVPIIFITAYDTDENLYNSISLKSSGFLKKPFDRRQLM--ISMLMAITN 129 >gi|83815406|ref|YP_446517.1| response regulator [Salinibacter ruber DSM 13855] gi|83756800|gb|ABC44913.1| response regulator [Salinibacter ruber DSM 13855] Length = 639 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D+ D+ R + L + Y+V + NGA A D V++ PF ++L D MP M+G+E+ Sbjct: 123 ILWVDDEIDLLRSHVMFLEEKDYDVSTVANGADAVDLVQQRPFDVVLLDEQMPGMEGLEV 182 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P L V+ +T L + + + L+KP + ++ RLL Sbjct: 183 LDAIKDERPTLPVVLVTKSEEEDLMEAALGNRISDYLTKPVNPSQILLTCKRLL 236 >gi|319778164|ref|YP_004134594.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171883|gb|ADV15420.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 757 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K LG GY+V +G ++ VR PF L++TDI MP MDGI Sbjct: 634 KRVLVIDDSLTVRELQRKMLGNHGYDVEVAVDGMDGWNAVRSGPFDLVVTDIDMPRMDGI 693 Query: 63 EL 64 EL Sbjct: 694 EL 695 >gi|312879601|ref|ZP_07739401.1| response regulator receiver protein [Aminomonas paucivorans DSM 12260] gi|310782892|gb|EFQ23290.1| response regulator receiver protein [Aminomonas paucivorans DSM 12260] Length = 120 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M K+L+ +D MR L L K G+EVV +NG +A E ++ DI MPEM Sbjct: 1 MGTKVLIVDDAAFMRMMLRDILMKNGFEVVGEADNGKNAVQMYSELKPDIVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGI + ++D KV+ ++ A+ ++ A + KPF Sbjct: 61 DGIAAVKEIKQMDSAAKVVMVSAMGQQAMVIEAIRSGAADFIVKPFQ 107 >gi|300863834|ref|ZP_07108759.1| CheA signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300338182|emb|CBN53905.1| CheA signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 858 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q ILLAED R + L AGYEVV+ +G AY+K++ F +++D+ MP +DG+ Sbjct: 740 QVILLAEDSIATRTQEKRILEAAGYEVVTAVDGLDAYNKLKTRTFDAVVSDVQMPNLDGL 799 Query: 63 ELARRATELD--PDLKVMFITGFAA 85 EL + + +L ++ +T A+ Sbjct: 800 ELTTKIRQHREYSELPIILVTSLAS 824 >gi|307155194|ref|YP_003890578.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985422|gb|ADN17303.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 358 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q +LA DD+ FLIK AL + GY+V +G +A +++ P L+L D++MP +DG Sbjct: 9 QNYILAVDDNPDNLFLIKLALEQEGYKVHLVEDGLTALAQIQYSPPDLILLDVMMPGIDG 68 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ RR + P + ++ IT + +L + + + + KP + +L V LL Sbjct: 69 FEVTRRIRQNPNIPFIPILLITAYEEPSLIQGLDVGAD-EFIRKPIQIDELQARVRSLLR 127 Query: 120 IKN 122 +K Sbjct: 128 LKQ 130 >gi|182414221|ref|YP_001819287.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177841435|gb|ACB75687.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 383 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 59/114 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ++L DD+ R I + + V + + A A K+R +PF++++ DI MPEMDGI Sbjct: 19 KPLVLVVDDEYGPRESIAFSLSSEFTVETADRAAEALAKLRAQPFAVVVLDIRMPEMDGI 78 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++DP + V+ +TG+ + + + L KP + +L++ V + Sbjct: 79 RALEEMRKIDPFVSVVMLTGYGTLLTAQQAMLAGANQYLRKPPDIAELLDAVRK 132 >gi|218780087|ref|YP_002431405.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218761471|gb|ACL03937.1| Response regulator receiver domain protein (CheY-like) [Desulfatibacillum alkenivorans AK-01] Length = 150 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 57/112 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K++L +D++ K L KAGYE ++ ++G + + + +++ D+ MP MDG+E Sbjct: 5 KLMLVDDEERFLETTKKLLTKAGYEALTASSGEESLELLGMHTVHVVVLDVKMPGMDGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ L P +V+ +TG A V D + + KP + DL+ V Sbjct: 65 TLKKIKTLYPLTEVIMLTGHATVEDAVDGMKSGASDYVMKPCDINDLLGRVE 116 >gi|188580706|ref|YP_001924151.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179344204|gb|ACB79616.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 977 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + L GY + + AS ++ + LL++D+ +P M+ Sbjct: 857 ETVLVVDDEPTVRMLVTEVLEDLGYTAIEAADSASGLKVLQSDVRIDLLISDVGLPGGMN 916 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G ++A A PDLKV+FITG+A A + + VL+KPF + L Sbjct: 917 GRQMADAARVSRPDLKVLFITGYAENAAVGNGHLEPGMAVLTKPFVVETL 966 >gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R] gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R] Length = 255 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MD Sbjct: 22 VSMKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRMD 81 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R D ++ +T V+ L+KPF L +L+ V L+ Sbjct: 82 GLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLV 139 >gi|119488494|ref|ZP_01621667.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455305|gb|EAW36445.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 396 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + R L L + Y+V NG A + + L+L DI+MPEM+G ++ Sbjct: 11 ILIVDDTPENLRLLSSMLEEQSYKVRKATNGKQALKAIEAQSPDLILLDILMPEMNGYQI 70 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 A+ LD D+ ++F++ + ++KPF +++++ V +T++N Sbjct: 71 AKHLKSLDSTRDIPIIFLSALNDTMDKVFAFDVGGVDYITKPFQVQEVLVRVRTQITLRN 130 >gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 230 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L ++L GYEV +G A + + E L++ D++MP MDG+E Sbjct: 2 KIVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ D A +A L KPF L +L+ V LL Sbjct: 62 VCRTLRGSGDDRPILVLTARDGVS---DRVAGLDAGADDYLPKPFALEELLARVRSLL 116 >gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R + + L GY + +GA A + + LL+TDI MP M+ Sbjct: 1 MSLTVLIADDDPGIRLSVSRFLESEGYCCLMAGDGAQALEMIHHYQPHLLITDIAMPNMN 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G EL R+ + P L+ V+++T + + L+KPF L +L V L Sbjct: 61 GYELVRQIRQ-HPSLRLLPVIYLTARTELEERIRAYRTGGDVYLAKPFDLNELAAVVRNL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|127511048|ref|YP_001092245.1| response regulator receiver protein [Shewanella loihica PV-4] gi|126636343|gb|ABO21986.1| response regulator receiver protein [Shewanella loihica PV-4] Length = 120 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL +D MR+ + L AG++V NG A + + + + L+++D+ MP MDGI Sbjct: 2 KKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALTQAKSQDYDLVISDVNMPVMDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R L P+ K ++ +T + + + + KPF+ L+ VN++L Sbjct: 62 TLIRNLRSL-PNYKFTPLLMLTTESGSEKKQEGRSAGATGWIVKPFNPDQLLATVNKVL 119 >gi|329765966|ref|ZP_08257528.1| CheY-like receiver [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137515|gb|EGG41789.1| CheY-like receiver [Candidatus Nitrosoarchaeum limnia SFB1] Length = 138 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ EDD D+ + L Y VV NG A K ++ L++ D M EMD Sbjct: 10 MAKTILVVEDDVDLLDLYEEVLQANAYNVVKATNGLEAISKYKKAQPDLVVMDGNMSEMD 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVN 115 G E + ++D D +V+ +TG++ N D + K + ++SKP + L++ V Sbjct: 70 GYEAFSKIIKIDKDARVVIVTGYS----NSDPKSKKALEQGLIAIISKPVGIDTLLDVVK 125 Query: 116 R 116 + Sbjct: 126 K 126 >gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++++ +F+ L GYEV + +G S D E + ++L D+++PE++G+E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR E ++ +T +V L KPF + +L+ + LL Sbjct: 63 VARRLRET-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLL 116 >gi|295116020|emb|CBL36867.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 208 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL AED+ +R +K L G+ V C +G A D + + +++ DI+MP +DG+ Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R VM +T AVA L+KPF +L + LL Sbjct: 62 VLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALL 116 >gi|302864827|ref|YP_003833464.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] gi|302567686|gb|ADL43888.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] Length = 512 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D R L+ L +AG+ V NG +A ++V E L++ D+ +P+M G E+ Sbjct: 8 VLVVDDSGPKRYLLVNWLTRAGFVTVEAENGTAALERVDREHIDLVVLDVRLPDMSGFEV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 R E P + V+ ++ A ++ + A L++P +LV + +L Sbjct: 68 CERIKEAHPSIPVIHVSAHAVDVVDRAQGLTRGADAYLAEPIEPEELVATAHAVL 122 >gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 234 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L L + GYEV ++G SAY K +E+ F+ +L D+++PEMDG+ Sbjct: 7 KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 66 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + ++ +T + L D ++KPF R++V + Sbjct: 67 VLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADD-------YITKPFSPREVVARLKA 119 Query: 117 LL 118 +L Sbjct: 120 VL 121 >gi|197121238|ref|YP_002133189.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196171087|gb|ACG72060.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 122 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPEMD 60 + ILL EDDD +R + + L GY V + NG + + +R L++ D+VMP M+ Sbjct: 3 GRSILLVEDDDAIRESVAECLDAEGYAVATVENGVAGLEWLRRSGRPDLVVLDLVMPVMN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G + A DP L+ + + A + P L+KPF L L+ V R Sbjct: 63 GAQFL-EAVRGDPSLRDLPVVLMTAALPSAQLPVPVADGYLTKPFELEQLLETVAR 117 >gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum gryphiswaldense MSR-1] Length = 1123 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++ + L K G+ ++GA A +V++ + L+L D+ MP MDG+ Sbjct: 871 RILVAEDNAINQQVAVGLLTKLGHRADVAHDGAEALIQVQQGDYDLVLMDMQMPNMDGLT 930 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 AR LD + + I A A++ D NA A + +SKP + L ++R Sbjct: 931 AARAIRALDGSISAITIIAMTANAMDEDRNACLAAGMNDYISKPIDRQRLAALLSR 986 >gi|153005873|ref|YP_001380198.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029446|gb|ABS27214.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 864 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 11/122 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + ILL EDD +R + L AGY V + A R P LL++D+++P + Sbjct: 735 ETILLVEDDAAIRAVARRTLLGAGYRVREAGSAEEALAVARGAGAPLHLLVSDVILPGRN 794 Query: 61 GIELARRATELDPDLKVMFITGF----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G EL++ P L+V+F++G+ + V L P +A +L+KPF +L+ V Sbjct: 795 GWELSQALARSLPGLRVLFVSGYERHASGVPL-----VPADAPLLAKPFAPAELLAAVRA 849 Query: 117 LL 118 L Sbjct: 850 AL 851 >gi|219849272|ref|YP_002463705.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219543531|gb|ACL25269.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 126 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I++ ED+ RR L +GY V+ +G A +K+ + +++TD+ MP M Sbjct: 1 MPPTIMIVEDESATRRLYRFLLQNSGYNVIEAEDGIDALEKLAVQECDVIITDMNMPRMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEV 114 GIEL R + + V+ +T + A PD+ K A + L+KPF +L V Sbjct: 61 GIELVRTLRQNHSQVYVIMVTAYGA----PDTE--KTALRIGVNEYLTKPFDFDELERRV 114 Query: 115 NRLLT 119 + Sbjct: 115 QNYFS 119 >gi|115372700|ref|ZP_01460006.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115370181|gb|EAU69110.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 224 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q +LL + D R + +L KAG+ V + +G A +KV+ P L+L D MPEMDG Sbjct: 31 KQHLLLVDGDAKSLRVMEVSLKKAGFSVTTAIHGKDALEKVQISPPDLVLADTKMPEMDG 90 Query: 62 IELARRATELDPDLKVM---FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL +A + D K + F+T +V L+KP +++++V V Sbjct: 91 FELC-KALKSDERFKFIPFVFLTNQKSVEFKVRGLELGGDDYLTKPIYIKEIVTRVR 146 >gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD D+ + + K+L G+E++S +G A ++E ++ DI+MP MD Sbjct: 1 MQKKILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIMMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+++ R+ ++ ++F++ + + D ++KPF +++L + Sbjct: 61 GLDVC-RSIRKSYNVPILFLSARDKDIDKIVGLEIGADD-------YMAKPFSIQELTSR 112 Query: 114 V 114 + Sbjct: 113 I 113 >gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6] gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae TIGR4] gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39] gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54] gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397] gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457] gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458] gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae] gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6] gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39] gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54] gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV104] gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV200] gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458] gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457] gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397] gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375] gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545] gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301] gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570] gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317] gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901] Length = 235 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ +R +M ++ + A+ L D L+KPF R+L+ Sbjct: 61 GMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAVL 118 >gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 228 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG EL Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + +P + ++ +T + D + KPF R+L + LL Sbjct: 64 TKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|291541544|emb|CBL14654.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 226 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%) Query: 5 ILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ILL EDD ++R L++ K + + NG DK E + LLL D+++PEMDG Sbjct: 4 ILLVEDDKNIREMLVEYFSKRDKEKFNITLAENGLKGLDKAYENSYDLLLLDVMLPEMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVA 87 L + D+ +MFIT + A Sbjct: 64 FTLCKEIRRY-SDVPIMFITARTSEA 88 >gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alistipes shahii WAL 8301] Length = 223 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL +D+ D+ F+ L + GYEV + NGA A E L+L D++MP MD Sbjct: 1 MSHRILLVDDEVDILEFVRYNLVREGYEVFTAENGAEALKVAAECRPHLILLDMMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G + RA +P LK + +A+ A + L+KP ++ LV+ V + Sbjct: 61 GAQTC-RAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAI 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|238751695|ref|ZP_04613184.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC 43380] gi|238710105|gb|EEQ02334.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC 43380] Length = 224 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KAL AG+ V N+G +A ++ E ++L++ D+ +P ++G++ Sbjct: 2 RLLLVEDHPELSHWLQKALTHAGFAVDVINDGLAADHLLQNENYALVVLDVALPRLNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + L V+ +T VA L+KPF L +L + LL Sbjct: 62 LLARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFELDELEARIRALL 116 >gi|196231516|ref|ZP_03130374.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224369|gb|EDY18881.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1025 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVREE--PFSLLLTDIVMPE 58 ++L+ +D++ + + AL + GY+V N+G +AY+K +E P+ L ++D+ +P Sbjct: 888 RVLVLDDEEAICMLVTCALEERGYKVTETNDGTQAIAAYEKAMQEGKPYDLFISDLTIPG 947 Query: 59 -MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G E +R E+DPD++ + +G+A + + +++KP+ + L +V + Sbjct: 948 GMGGQETIKRLLEIDPDIRAIVSSGYANDPVMSRYEEYGFSGMIAKPYEIDALGRKVAEI 1007 Query: 118 L 118 L Sbjct: 1008 L 1008 >gi|94970045|ref|YP_592093.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552095|gb|ABF42019.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 522 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +R L GY++++ +G A + E +L+TD+VMP + G Sbjct: 395 VLLVEDEEALRAAAGDFLETRGYKIMTARDGTEALSMASKFAERIDVLITDLVMPGISGR 454 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ ++ P+ KVM+++G+ + + ++ L KPF + L ++ +L Sbjct: 455 VLAQELVKIHPETKVMYMSGYDDETVMVNGEIDSSSAFLRKPFRMDALSAKIREVL 510 >gi|85858057|ref|YP_460259.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85721148|gb|ABC76091.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 725 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL +D+ + + L GY V N A + R P F L++TD+ MP+M Sbjct: 601 SEHILFVDDETALVEMGQETLRTLGYRVTGICNSLEALETFRRTPSLFDLIITDMTMPQM 660 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L+R ++ D+ ++ TG++ ++ + + KP +++L + R+L Sbjct: 661 TGTVLSRHLLQIRGDIPIILCTGYSEFITEKEAKELGIREFIMKPLFMKELATVIRRVL 719 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED L L + GY+ NG A + L+++D++MPEMDG Sbjct: 13 EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYA 72 Query: 64 LARRATELDPDLKVM 78 L R + PDL+ + Sbjct: 73 LC-RWLKGQPDLRTI 86 >gi|78187255|ref|YP_375298.1| response regulator receiver domain-containing protein [Chlorobium luteolum DSM 273] gi|78167157|gb|ABB24255.1| response regulator receiver domain protein (CheY-like) [Chlorobium luteolum DSM 273] Length = 125 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q ILL ED+ +R + L G+ V+ NG+ A D + L+L+D++MP MDG Sbjct: 3 QQTILLVEDEPHTKRLISYVLESKGFHVMVAENGSVALDICKNNVPDLILSDVMMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 +EL R+ + + FI A + NA K + ++KP ++ N +N +L Sbjct: 63 LELRRKVLQDAALSAIPFIFLSARAQTHEIINAEKLNPIAYITKPVEPDEITNIINGIL 121 >gi|39936995|ref|NP_949271.1| sensor histidine kinase/response regulator [Rhodopseudomonas palustris CGA009] gi|39650852|emb|CAE29375.1| sensor histidine kinase with a PAC motif and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 402 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 6/108 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 IL+ ED+ ++ F + L GY+ V ++G A + + + F L+L+D+ MP MDG+ Sbjct: 287 ILVVEDNAEVGEFSTQLLHDLGYQTVLASSGEQALALLGDNAKRFDLVLSDVAMPGMDGV 346 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R + P+L V+ +G+A + + D ++L KP+ + DL Sbjct: 347 TLGREIKKRLPELPVVLNSGYAHMLADED----HGFELLHKPYSVEDL 390 >gi|118579609|ref|YP_900859.1| two component sigma54 specific Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502319|gb|ABK98801.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 457 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 51/107 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DDD R L L GY V+ G A + E F LL+ D+ +P+ GIE Sbjct: 6 RILVVDDDDSGREALELLLRSGGYTVMGAATGEEALAALERESFHLLVLDLFLPDTSGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + P +V+ +TG+A+ + ++KP + +L Sbjct: 66 ILQVTRRKYPTTEVIVVTGYASAETAVSAMKEGAFDYITKPVNFEEL 112 >gi|295108034|emb|CBL21987.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 257 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A D +R+ F L+L DI +P+ +G Sbjct: 29 KQILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINLPDGNGF 88 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 89 ELCKLIKPQYPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 143 Query: 118 LTI 120 + Sbjct: 144 FAM 146 >gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ +D+ ++R + L GY V +NGA A K E L++ DI+MP MD Sbjct: 1 MAYNVLIVDDNKEIREVVNVLLSNEGYIVNEADNGAEAITKC--EAQDLIILDIMMPGMD 58 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + RR EL ++ ++F+T D L KPF +L++ VN L+ Sbjct: 59 GFKTCRRIREL-TNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALI 115 >gi|315501112|ref|YP_004079999.1| response regulator receiver modulated serine phosphatase [Micromonospora sp. L5] gi|315407731|gb|ADU05848.1| response regulator receiver modulated serine phosphatase [Micromonospora sp. L5] Length = 512 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D R L+ L +AG+ V NG +A ++V E L++ D+ +P+M G E+ Sbjct: 8 VLVVDDSGPKRYLLVNWLTRAGFVTVEAENGTAALERVDREHIDLVVLDVRLPDMSGFEV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 R E P + V+ ++ A ++ + A L++P +LV + +L Sbjct: 68 CERIKEAHPSIPVIHVSAHAVDVVDRAQGLTRGADAYLAEPIEPEELVATAHAVL 122 >gi|288937700|ref|YP_003441759.1| two component, sigma54 specific, transcriptional regulator, Fis family [Klebsiella variicola At-22] gi|288892409|gb|ADC60727.1| two component, sigma54 specific, transcriptional regulator, Fis family [Klebsiella variicola At-22] Length = 443 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD L L GY+V +NG A ++++ + F L+L DI M EMDGI Sbjct: 7 QILVVDDDVSHCTILQALLRGWGYQVALAHNGLQALEQIQHQVFDLVLCDIRMAEMDGIA 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P + V+ +T F++V ++ L KP L Sbjct: 67 TLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDFDTL 113 >gi|260776785|ref|ZP_05885679.1| chemotaxis regulator CheY [Vibrio coralliilyticus ATCC BAA-450] gi|260606451|gb|EEX32725.1| chemotaxis regulator CheY [Vibrio coralliilyticus ATCC BAA-450] Length = 119 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D +R+ + L AGYEV + N+G A +KV F ++++D+ MP M G E Sbjct: 3 KILAVDDSVSIRQMVSHTLRDAGYEVETANDGRDALNKVASSKFDVVISDVNMPNMGGFE 62 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A P K ++ +T + + L KPF+ L+ + R++ Sbjct: 63 LV-KALRDKPQYKFVPILMLTTETSTEKKQQGKSAGATGWLVKPFNPETLLKTLKRVI 119 >gi|255527226|ref|ZP_05394109.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255509090|gb|EET85447.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 235 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMD 60 N KIL+ EDD ++ + K L K GYE+V +G +A DK + F L++ D+++P +D Sbjct: 6 NIKILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVD 65 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G E+ RR + + ++ I+ +A+++ D + KPF L + V Sbjct: 66 GFEIIRRVRQ-KSTVPILVISAKNTEMDKISAISMGADD-------YIVKPFSLNEFVVR 117 Query: 114 VNRLL 118 + L+ Sbjct: 118 IKALI 122 >gi|261403608|ref|YP_003247832.1| response regulator receiver protein [Methanocaldococcus vulcanius M7] gi|261370601|gb|ACX73350.1| response regulator receiver protein [Methanocaldococcus vulcanius M7] Length = 124 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K L+ +D MR L K L G VV +NG A +K +E L+ DIVMPEMDG Sbjct: 6 KTLVVDDSAFMRNILKKILTPTGKFVVVGEASNGKEAIEKAKELQPDLITMDIVMPEMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I R ++ P++K++ T ++ + KPF ++ E+N+L Sbjct: 66 ITATREIKKILPNVKIVMCTSIDQEKKVIEAIEAGADGYIVKPFQAPKVLEELNKLF 122 >gi|268678961|ref|YP_003303392.1| sigma-54 factor interaction domain-containing protein [Sulfurospirillum deleyianum DSM 6946] gi|268616992|gb|ACZ11357.1| sigma-54 factor interaction domain-containing protein [Sulfurospirillum deleyianum DSM 6946] Length = 385 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 7/114 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 I + EDD +MR+ L ALG+ YE ++ SA D ++ + L++TDI MP MDGI Sbjct: 3 IAIVEDDINMRKSLEIALGE--YEEFKISSYKSALDALKKIDTSVDLIVTDINMPGMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E ++ LD ++ ITG A ++ +S L+KPF + LV + R Sbjct: 61 EFIKK---LDGLYDIIVITGNATLSRAIESVRLGVKDFLTKPFEIETLVEAIKR 111 >gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1769 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED++ + L GY + NG A ++ L+L DI MP MDG+E Sbjct: 1640 LLLAEDNEANISTISSYLTAKGYRIELAKNGQEAINQAVALSPDLILMDIQMPGMDGLEA 1699 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 +R E+ P+L I A+A+ D A A + LSKP L+ L + LL Sbjct: 1700 MKRIREI-PELATTPIIALTALAMESDRKACLLAGANEYLSKPVRLKQLTMTIQDLL 1755 >gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] Length = 222 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED D++ +L KAL G+ V ++GA A ++ E +SL++ D+ +P + G+E Sbjct: 2 RILLVEDHDELSLWLQKALSSTGFAVDIASDGAIADQLLQTESYSLVVLDVSLPRLSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + ++ V+ +T + V+ L+KPF L +L + LL Sbjct: 62 VLAQMRKRGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALL 116 >gi|126740923|ref|ZP_01756607.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Roseobacter sp. SK209-2-6] gi|126718023|gb|EBA14741.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Roseobacter sp. SK209-2-6] Length = 446 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+A+DD MR L + L AG++ + GA A ++E PF +LL+D+ MP M G+E Sbjct: 8 SILVADDDKAMRHSLAELLEVAGWQCETVARGADALKLLQERPFDVLLSDVQMPGMSGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 L L D ++ I+ + + + + KP+ R L++ Sbjct: 68 LLSHLN-LAKDPPLVLISAHGDIPMAVQAMQDGAYSFVEKPYEPRRLLS 115 >gi|71905867|ref|YP_283454.1| PAS [Dechloromonas aromatica RCB] gi|71845488|gb|AAZ44984.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 673 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 64/108 (59%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDGI 62 +LL EDD ++RR + + L G+ V+ +G+ A D + + +++++D++MP ++G Sbjct: 557 VLLVEDDPNVRRVVRQQLIDLGHPVIEAEDGSQALDMIDQIHDIAVVVSDVIMPGGLNGR 616 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +LA + P+++++ ++G+ A +++ +L+KPF +DL Sbjct: 617 QLAEQTLARRPEMRIVLMSGYTDEA---ETDGTSALPILAKPFDRQDL 661 >gi|332829640|gb|EGK02286.1| hypothetical protein HMPREF9455_01556 [Dysgonomonas gadei ATCC BAA-286] Length = 1374 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D++R ++ L + Y V NG A D + E L+++D++MPEMDGI Sbjct: 1116 RILVVEDEDEIREYIKDEL-SSEYRVTVSENGKEALDLILTEKPDLIISDVMMPEMDGIT 1174 Query: 64 LARRATE 70 L+R+ + Sbjct: 1175 LSRKVKQ 1181 >gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL J2-003] Length = 225 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A + E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|224368369|ref|YP_002602532.1| sensory box histidine kinase / response regulator [Desulfobacterium autotrophicum HRM2] gi|223691085|gb|ACN14368.1| sensory box histidine kinase / response regulator [Desulfobacterium autotrophicum HRM2] Length = 265 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 8/121 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + IL+ +D+ + + L + GY+V++ NG A ++ R+ L++ DI MPEM Sbjct: 138 ETILVVDDEKSIIDMVGTILNQFGYQVLTAANGREALERHRQLSRKIDLVILDIGMPEMG 197 Query: 61 GIELARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E + +LDP +V+F +G+ A++A S A + KP+ + D + + + Sbjct: 198 GQECLQELLKLDPHTRVVFTSGYLNDASIAELMKSGA---MGYIGKPYKVTDFLQSIRTV 254 Query: 118 L 118 L Sbjct: 255 L 255 >gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 225 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A D L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAEGHTIPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|149923980|ref|ZP_01912365.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] gi|149815158|gb|EDM74709.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] Length = 672 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+D +R I+AL + G+ V+S NNGA + + +L D+ MP MDG Sbjct: 556 ILVIDDEDAVRSLAIRALERLGFRVLSANNGAVGVELFAAHRAQLNCVLLDLKMPVMDGE 615 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E LDP + V+ +GF A L KP+ + L ++ +L Sbjct: 616 ETFAALHRLDPTIPVILCSGFVEHESTRAMTRAGLAGFLQKPYTIEALGQTLHEVL 671 >gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440] Length = 252 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G++V + NG +A R+ ++ D+++P++DG Sbjct: 27 RVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGFA 86 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E+ P + V+F+T AV ++KPF L +++ + LL Sbjct: 87 VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALL 141 >gi|71066151|ref|YP_264878.1| two component heavy metal response transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039136|gb|AAZ19444.1| two component heavy metal response transcriptional regulator, winged helix family [Psychrobacter arcticus 273-4] Length = 238 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ + ++ K L + G+ V G Y + E FS++L D+++P++ G E Sbjct: 2 KVLLVEDEQKLGEYIKKGLTETGFIVDHHMTGLDGYHALMTEEFSVVLMDVMLPDVSGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R V+F+T ++ L+KPF +L+ + LL Sbjct: 62 LVQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKNLL 116 >gi|328952432|ref|YP_004369766.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] gi|328452756|gb|AEB08585.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] Length = 134 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 48/83 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++D R L K L +V NG A + ++ + F +++ D+ MP +DGIE Sbjct: 5 RVLLVDDEEDFRETLQKRLRNRNIQVEEAENGNRALEILQTQDFDVVILDVKMPGLDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + PD++V+ +TG A+V Sbjct: 65 TLKIIKAQKPDVEVIMLTGHASV 87 >gi|325291557|ref|YP_004277421.1| two component response regulator [Agrobacterium sp. H13-3] gi|325059410|gb|ADY63101.1| two component response regulator [Agrobacterium sp. H13-3] Length = 448 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++++R +AL +G+ V + A + + ++++DI MP MDG+ Sbjct: 5 RVLLIDDEEELRFSTAQALELSGFAVTMLASAEHALELIGYSFDGVVVSDIRMPGMDGMT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVN--RLL 118 L ++ ELDP++ V+ +TG V L ++ + KPF +L ++ N R L Sbjct: 65 LLQKVRELDPEIPVILMTGHGDVQLAVNAMRNGAYDFIEKPFTPQYLAGIIKRANDRRAL 124 Query: 119 TIKN 122 ++N Sbjct: 125 VLEN 128 >gi|317152849|ref|YP_004120897.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316943100|gb|ADU62151.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 638 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMD 60 ++LL +DD + + + L AGYEV + ++G Y R + + L+LTD MP+M Sbjct: 521 RLLLVDDDHGALQAMRRVLRDAGYEVFTADSGQEGLKEYFHARGQ-YDLVLTDQSMPDMT 579 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ELA R E D +++ TG L + A + KP R LV V + Sbjct: 580 GLELAARILEHDGGARIIICTGHVEPQLEAQAAGAGVAGFVMKPMSPRVLVENVRK 635 >gi|265754966|ref|ZP_06089880.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263234577|gb|EEZ20156.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1417 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD D+R FL K + +EVV+ +G + +++ R L++ D++MP M+G Sbjct: 1165 KKILIIEDDTDIREFLKKEI-SVYFEVVAEADGVAGFERARTYDADLIICDVLMPGMNGY 1223 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ E + ++ +T + ++KPF L+ L+ + +L+ Sbjct: 1224 EVTRKLKNEFSTSHIPIILLTAMGTTENKLEGVESGADAYVTKPFSLKLLLARMVQLI 1281 >gi|237724524|ref|ZP_04555005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229437083|gb|EEO47160.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1417 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD D+R FL K + +EVV+ +G + +++ R L++ D++MP M+G Sbjct: 1165 KKILIIEDDTDIREFLKKEI-SVYFEVVAEADGVAGFERARTYDADLIICDVLMPGMNGY 1223 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ E + ++ +T + ++KPF L+ L+ + +L+ Sbjct: 1224 EVTRKLKNEFSTSHIPIILLTAMGTTENKLEGVESGADAYVTKPFSLKLLLARMVQLI 1281 >gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 224 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 40/64 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ L+K L Y V C NGA A D + + L++ DI++P +DG++ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPRIDGLQ 61 Query: 64 LARR 67 + +R Sbjct: 62 VLQR 65 >gi|212693766|ref|ZP_03301894.1| hypothetical protein BACDOR_03287 [Bacteroides dorei DSM 17855] gi|237709290|ref|ZP_04539771.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|212663655|gb|EEB24229.1| hypothetical protein BACDOR_03287 [Bacteroides dorei DSM 17855] gi|229456675|gb|EEO62396.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1417 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD D+R FL K + +EVV+ +G + +++ R L++ D++MP M+G Sbjct: 1165 KKILIIEDDTDIREFLKKEI-SVYFEVVAEADGVAGFERARTYDADLIICDVLMPGMNGY 1223 Query: 63 ELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ E + ++ +T + ++KPF L+ L+ + +L+ Sbjct: 1224 EVTRKLKNEFSTSHIPIILLTAMGTTENKLEGVESGADAYVTKPFSLKLLLARMVQLI 1281 >gi|170749428|ref|YP_001755688.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655950|gb|ACB25005.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 812 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 +L+ ED++++ F +AL + GYE V + +A + ++ ++ +D+VMP M+G+ Sbjct: 691 VLVVEDNEEVGAFARQALVELGYEAVWVKDAQAALATIEANDQEIEVVFSDVVMPGMNGV 750 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +LAR P L V+ +G++ V S ++L KP+ + DL Sbjct: 751 DLAREIRRRRPYLPVVLASGYSHVLA---SEGTHGFELLHKPYSVADL 795 >gi|161502167|ref|YP_001569279.1| hypothetical protein SARI_00190 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863514|gb|ABX20137.1| hypothetical protein SARI_00190 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 224 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGIDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +R + L V+ +T +AVA L KPF L +L Sbjct: 62 VVQRLRKRGLTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEEL 108 >gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 228 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 61/120 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ ED++D+ + + L K GY+V + A+D V E+ + L+ D+++P ++G Sbjct: 6 EKVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGF 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E E ++ ++ +T A+ + L+KPF R+L+ + L+ N Sbjct: 66 EFVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSN 125 >gi|147678397|ref|YP_001212612.1| FOG: CheY-like receiver [Pelotomaculum thermopropionicum SI] gi|146274494|dbj|BAF60243.1| FOG: CheY-like receiver [Pelotomaculum thermopropionicum SI] Length = 124 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR + + K GYEVV NG A + ++ L+ DI MPEM Sbjct: 1 MGKRILIVDDAAFMRMMIKNIVTKNGYEVVGEAENGQVAVELYKQLKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +GI+ + +DP+ ++ + A+ ++ + KPF ++ + R+L Sbjct: 61 NGIDGVKAIRRIDPNANIIMCSAMGQQAMVMEAIQAGAKDFIVKPFQQDRILQAIERVLA 120 >gi|104782707|ref|YP_609205.1| response regulator [Pseudomonas entomophila L48] gi|95111694|emb|CAK16418.1| putative response regulator [Pseudomonas entomophila L48] Length = 394 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G+ V+ NG E L++ D+ MP+M G+EL Sbjct: 8 LLIIDDDDVVRASLAAYLEDSGFSVLQAANGQQGLQVFEEHQPDLVICDLRMPQMGGLEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 RR +E P L V+ ++G ++ ++ A L KP L L + V R L Sbjct: 68 IRRVSERAPQLPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|39656345|gb|AAR29895.1| putative histidine kinase HHK16p [Cochliobolus heterostrophus] Length = 1251 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 14/128 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--------PFSLLLTDIVM 56 +L+ ED+ ++ L K L KAG + +NG A D + + P S++L D M Sbjct: 1113 VLVVEDNHLNQKILCKQLTKAGCITATADNGVHALDYLTKTQFCTPNGIPLSMVLMDCEM 1172 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRDL 110 PEMDG+ R+ E++ +V+ AV N A+ V+ KPF + +L Sbjct: 1173 PEMDGLTCCRKIREMEQRKQVLGHVPIIAVTANIRCGQIDEARESGMDDVIGKPFRIPEL 1232 Query: 111 VNEVNRLL 118 ++++ LL Sbjct: 1233 LDKMRGLL 1240 >gi|78357150|ref|YP_388599.1| response regulator receiver domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219555|gb|ABB38904.1| response regulator receiver domain protein (CheY-like) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 120 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I+ +D +R+ + L GYEV+ ++G A K+R + +++TD+ MP MD Sbjct: 1 MAPTIMTVDDSASVRQMVSFTLRNEGYEVIEASDGKDALAKIRPD-VKMVITDLNMPNMD 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RA + ++ +T + A D A + KPF L+ V ++L Sbjct: 60 GIELIRNIRAKSGFKFIPIIMLTTESQAAKKQDGKAAGATGWIVKPFKPEQLLAVVKKVL 119 >gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 222 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 57/112 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD + R+L L G+E++ N+G K E F ++L D+++P++ GI Sbjct: 2 KRILLIEDDAAIARYLELELKHEGFELIIENDGEGGLAKALLEKFDVILLDVMLPKISGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ RR + V+ +T V+ ++KPF + +L+ + Sbjct: 62 EVLRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARI 113 >gi|300864140|ref|ZP_07109035.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337868|emb|CBN54181.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1037 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D + R ++ L G+ + NG DK+ E +L++TDI MP MDG E Sbjct: 824 KILVVDDRWENRSVIVNLLSPIGFILFEAENGQEGLDKIAEVQPNLVITDIAMPIMDGHE 883 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + R +L P + I A+V S+ K+ V L KP L+ + LL Sbjct: 884 MVRNLRKLPPFANLSVIVSSASVF---QSDMQKSIDVGANEFLPKPIQADSLLEAIKTLL 940 Query: 119 TIK 121 ++ Sbjct: 941 NLE 943 >gi|291458308|ref|ZP_06597698.1| DNA-binding response regulator [Oribacterium sp. oral taxon 078 str. F0262] gi|291418841|gb|EFE92560.1| DNA-binding response regulator [Oribacterium sp. oral taxon 078 str. F0262] Length = 257 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 5/85 (5%) Query: 4 KILLAEDDDDMRRFLIKALG---KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 K+L+A+D+ + LI+ LG G E+ + NG +A +K+ P +L+TDI MP + Sbjct: 3 KVLIADDEKRICE-LIQILGDWEGHGMELSGTAENGPAALEKIAMSPPDILITDIRMPGL 61 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 G+EL R A +L P LK + I+G+A Sbjct: 62 TGLELIREAKKLSPALKTVIISGYA 86 >gi|297569590|ref|YP_003690934.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfurivibrio alkaliphilus AHT2] gi|296925505|gb|ADH86315.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfurivibrio alkaliphilus AHT2] Length = 724 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 54/113 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D R L++ L Y+V +G A + V L+L D+VMP+ DGIE+ Sbjct: 20 ILVVDDRRLDRESLVELLRAYDYQVTGVADGDQAREHVNTHRTDLVLVDMVMPQKDGIEV 79 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R L P+L+V+ IT +A + L+KP L+ V R+ Sbjct: 80 LRELKLLHPELEVILITAYATLEKAVAGLREGAYDFLTKPCPTDTLIAAVERV 132 >gi|226225613|ref|YP_002759719.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226088804|dbj|BAH37249.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 806 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY--DKVREEPFSLLLTDIVMPEM--D 60 +L+AED ++R L + L +AG+ V + NG A P +L+TD MP + D Sbjct: 680 VLVAEDQPEVRNLLERILTRAGFHVTAVENGQEAITASASPSRPIDVLITDYDMPHVRGD 739 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + LA RA ++P L ++ I+GF A V+ KPF ++L++ V Sbjct: 740 AVALAFRA--MNPALPIVLISGFTRDGWPTALLASAATVVMDKPFSAQELLSAV 791 >gi|218887422|ref|YP_002436743.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758376|gb|ACL09275.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 151 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ R + K L + GY V + +GA A +R + + D+ M +MDG E Sbjct: 31 RLLLVDDEAGFIRVMQKRLSRRGYVVDTAGSGAEALRTLRGAAYDAAVFDLKMDDMDGFE 90 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + P++ V+ +TG + A L KP + +LV + R L Sbjct: 91 LLRVVRRMAPEMAVIMLTGHGGAEEAREGMRLGAAGYLLKPCEMEELVCAIERAL 145 >gi|170702727|ref|ZP_02893587.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia ambifaria IOP40-10] gi|170132362|gb|EDT00830.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia ambifaria IOP40-10] Length = 451 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD +RR +++L AG++VV + +A + E ++++DI +P G++ Sbjct: 6 QVIYIEDDALVRRASVQSLQLAGFDVVGFESAEAADKAIVAETAGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 66 LLAQCRERVPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFAAERLIETVRRAL 120 >gi|163814295|ref|ZP_02205684.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759] gi|158449930|gb|EDP26925.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759] Length = 244 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 K+L+ +D+ D+R L L + GYEVV +G A + VR L++ DI+MP++ G Sbjct: 17 KVLVVDDEQDIRTLLNIYLKRLGYEVVEAADGVEAVETVRANSDIDLIVMDIMMPKLSGT 76 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAP---KNAKVLSKPFHLRDLVNEVNRLL 118 E + E + V+F+T A PD N L KPF D +VN L+ Sbjct: 77 EACEQIREF-SSVPVLFLT---AKTKEPDQNEAYVVGGDDFLPKPFTQNDFNRKVNALI 131 >gi|82703806|ref|YP_413372.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196] gi|82411871|gb|ABB75980.1| response regulator receiver modulated diguanylate cyclase [Nitrosospira multiformis ATCC 25196] Length = 302 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD R L K G+ V + +G A++ +++ + LL++D +MP++DG++ Sbjct: 2 KILIAEDDTTSRLLFAATLRKLGHTVTAVEDGRKAWEAWQKDEYPLLISDWMMPDIDGLQ 61 Query: 64 LARRATELDPDLKVMFI 80 L R +P L+ +I Sbjct: 62 LC-RMIRGEPGLQYTYI 77 >gi|71735369|ref|YP_276133.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555922|gb|AAZ35133.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 443 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++ +D+ +R+ + + L +G+EV ++ E ++LTD+ MP M G+EL Sbjct: 4 VIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAQLPEHFPGVVLTDVRMPGMSGLEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +DPDL V+ +TG V + ++ L KPF L++ + R L Sbjct: 64 LSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRAL 117 >gi|75909821|ref|YP_324117.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703546|gb|ABA23222.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 393 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 4 KILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D D FLIK L + GY V + NG SA +++ P L+L D++MP MDG Sbjct: 10 KILVVDDSPD-NVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGMDGY 68 Query: 63 ELARRA---TELDPDLKVMFITGFAA--VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E+ RR +L + ++ IT A VA D A + KP + +L+ V L Sbjct: 69 EVTRRVRGEMKLQQYIPILLITAHDAPNVAHGLDLGAD---DFIRKPVTVDELLARVRSL 125 Query: 118 LTIKN 122 L +K+ Sbjct: 126 LRLKH 130 >gi|120555138|ref|YP_959489.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] gi|120324987|gb|ABM19302.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] Length = 725 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ + + L L G+EV + G A +++ + F L L D+ MPE+DG ++ Sbjct: 18 ILVADDEPRLLKTLADLLRSRGFEVSEAHGGRQACEQLHRQAFDLALLDLNMPELDGFQV 77 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L PD V+ ++G ++ + + + KPF +L+ V +L Sbjct: 78 MAETGRLQPDCGVIVVSGESSFSTVSRALRRGALDYIRKPFDPEELLATVEGVL 131 >gi|332521696|ref|ZP_08398149.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332042785|gb|EGI78985.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 235 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 14/123 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILLA+DD D L + L +EV +GA A D + F + + D++MP++DG Sbjct: 4 KSILLADDDIDFGTTLKQYLELNKFEVFWAKDGAEALDLFKMHTFDICIIDVMMPKLDGF 63 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +L+++ ++ + + +F+T ++L D ++KPF + +L+ +N Sbjct: 64 KLSKKISKKNAETPFLFLTARKTKEDRIKGLSLGADD-------YITKPFEVEELILRIN 116 Query: 116 RLL 118 ++ Sbjct: 117 NII 119 >gi|330508892|ref|YP_004385320.1| histidine-protein kinase [Methanosaeta concilii GP-6] gi|328929700|gb|AEB69502.1| histidine-protein kinase [Methanosaeta concilii GP-6] Length = 925 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 2/108 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ R+ + L + GY+ NG ++E+P+ ++L D+ MPEMDG+E Sbjct: 804 RILMAEDNPVNRKVALSMLKRLGYQADVAENGLKVLQALQEKPYDIVLMDVQMPEMDGLE 863 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDL 110 RR + + ++ +T + + +A NA + SKP + +L Sbjct: 864 ATRRIRDSGYNTCIIAMTAHSMGESRDECLDAGMNAYI-SKPIEIEEL 910 >gi|320353837|ref|YP_004195176.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122339|gb|ADW17885.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 947 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ +D+ + + + L GY + + A++ +P F L++TD+ MP Sbjct: 825 ETILIVDDEPAVAMAMARMLNTLGYSTEVFTDSSKAFEAYTRDPTLFDLVITDMTMPRFT 884 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ +AR L PD ++ TG+ + A L KP L L V R+L Sbjct: 885 GVAIARAMLALRPDQPIIICTGYTEAINEAGAKAEGIRAFLVKPVSLATLAQAVRRVL 942 >gi|302392089|ref|YP_003827909.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] gi|302204166|gb|ADL12844.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] Length = 120 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D MR L + + + GYEV+ NG A + +E L+ DI MP+M Sbjct: 1 MAKGILIVDDAQFMRTMLSQLIEENGYEVLGEAENGQEAVEMYKEVNPDLVTMDITMPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGIE E+DPD K++ + + D+ + KP Sbjct: 61 DGIEATEAILEIDPDAKIVMCSAMGQKPMVVDALEAGAKDFIVKPIQ 107 >gi|298482158|ref|ZP_07000346.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298271715|gb|EFI13288.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1428 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD+D+R FL + L A +EV +G S ++K L++ D++MP M G Sbjct: 1175 HKILVIEDDNDIRGFLQEEL-SAYFEVEVAADGISGFEKACNYDADLIICDVLMPGMTGF 1233 Query: 63 ELARRATELDPDLKVMFITGFAAVAL-----NPDSN---APKNAKV-LSKPFHLRDLVNE 113 E+ ++ LK+ F T + L +PD + A V ++KPF + L+ + Sbjct: 1234 EVTKK-------LKIEFATSHIPIILLTALTSPDKHLEGLEAGADVYVAKPFSFKLLLAQ 1286 Query: 114 VNRLL 118 V RL+ Sbjct: 1287 VFRLI 1291 >gi|255014080|ref|ZP_05286206.1| rteB, two-component system response regulator [Bacteroides sp. 2_1_7] Length = 439 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+ V S ++ + A ++ EE F L+++D+ +P+ DGI+L Sbjct: 4 ILIVEDDITFSLMLTTWLGKKGFVVRSSSSVSDAKRRLGEEAFDLVISDLRLPDSDGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P L ++ +T +A + + A ++KP + +L+ ++ L+ ++ Sbjct: 64 LKWLKSTHPSLPLIMMTSYAEIQTAVQAMKLGAADYIAKPLNPDELLGKIKELVRVE 120 >gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 226 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD D+ R L +L AGY V +G A+ EP+ ++ D+ +P++DG+ Sbjct: 2 RILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGLPKIDGVS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R V+ +T A + L+KPFH +L+ + L+ Sbjct: 62 VLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALV 116 >gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] Length = 223 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL AED+ +R +K L G+ V C +G A D + + +++ DI+MP +DG+ Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R VM +T AVA L+KPF +L + LL Sbjct: 62 VLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALL 116 >gi|255281191|ref|ZP_05345746.1| phosphate regulon transcriptional regulatory protein Phob [Bryantella formatexigens DSM 14469] gi|255268148|gb|EET61353.1| phosphate regulon transcriptional regulatory protein Phob [Bryantella formatexigens DSM 14469] Length = 230 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A D +R+ F L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|88797705|ref|ZP_01113293.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Reinekea sp. MED297] gi|88779382|gb|EAR10569.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Reinekea sp. MED297] Length = 976 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D DMR +L K Y V+ +G A++ ++ E +++TD++MP MDG++L Sbjct: 739 LLLVDDVADMREYLAGHFRK-DYRVLMAGDGLQAWEVLQTESVDVVVTDLMMPVMDGMDL 797 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLL 118 R D LK + + +A + + D N A L+KPF +L+ VN L+ Sbjct: 798 LNR-LRADQRLKELPVLVLSARSEHTDRNLALANNADDYLAKPFDSEELILRVNNLV 853 >gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1202 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ + L K G V + G A + + +E F L+L D+ MPEMDG E Sbjct: 1079 RVLLAEDNAINMHLAKELLKKRGNSVTGVSTGKEALEALAKESFDLVLMDVQMPEMDGEE 1138 Query: 64 LAR--RATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R RA E DP + ++ +T +A A LSKP ++ +L + R+ Sbjct: 1139 ATRRIRAGEAGDPSVPIVALTAYALEGDRERFLAAGMDDYLSKPINMEELDRVLARI 1195 >gi|323496998|ref|ZP_08102021.1| nitrogen regulation protein [Vibrio sinaloensis DSM 21326] gi|323317842|gb|EGA70830.1| nitrogen regulation protein [Vibrio sinaloensis DSM 21326] Length = 467 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R + K L A + + ++ S + E +L++DI MP +DGIEL Sbjct: 6 VWVVDDDSSIRWVMEKTLSSANIKCDTFSDAESVLLALERESPDVLVSDIRMPGIDGIEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R+ E PDL V+ +T + + ++ + L KPF + + + V R +T Sbjct: 66 LRQVNERSPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPKPFDVDETLTLVERAIT 120 >gi|294651360|ref|ZP_06728679.1| chemotactic signal transduction system component [Acinetobacter haemolyticus ATCC 19194] gi|292822762|gb|EFF81646.1| chemotactic signal transduction system component [Acinetobacter haemolyticus ATCC 19194] Length = 1711 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ L+L DI MP MDG E+ Sbjct: 1593 IMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAMEQLETVKPDLMLLDIEMPRMDGFEV 1652 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R E+ DL ++ IT + + ++ + KPF L+ + LL ++ Sbjct: 1653 TNLVRHHEIHRDLPIIMITSRTGEKHRERALSLGVSQYMGKPFQEETLLENIESLLAVR 1711 >gi|260584708|ref|ZP_05852454.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] gi|260157731|gb|EEW92801.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] Length = 227 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD ++ + L + Y V + NG A + + ++ L+++DI+MPEMDG E Sbjct: 4 ILVCEDDFAIKTMISTKLKQENYSVYTVQNGQEALNLMEKQQIDLVISDIMMPEMDGYEF 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E L ++ IT + + + + KP L +LV V LL Sbjct: 64 VQTLRETKHTLPILMITAKSQLESLEAAFKLGVDDYMVKPLRLEELVLRVKALL 117 >gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 229 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD+ + L + L GY+V + NGA + L++ D++MP++D Sbjct: 1 MRSAILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G E+ RR E + V+ +T A + N K + L KPF L +L+ V Sbjct: 61 GFEVCRRLREGGSTVPVLMLT-----AKDEVENRVKGLDIGADDYLVKPFALEELLARVR 115 Query: 116 RLLTIKN 122 LL K+ Sbjct: 116 ALLRRKD 122 >gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 236 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED D+ + + + L AGY VV +G +A D + E L++ D ++P++DG+E+ Sbjct: 4 ILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLAREQPDLVVLDWMLPQVDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + P V+ +T + V L ++ L+KPF +R+L+ V LL Sbjct: 64 LRRLRQESPT-PVLMLTARSEEVDRVVGLELGAD-----DYLTKPFSMRELLARVRALL 116 >gi|271969710|ref|YP_003343906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512885|gb|ACZ91163.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD +R L AL + G+ V S +G A D +R +++ D+++P +DG+E+ Sbjct: 4 ILLVEDDPSVRTGLELALARQGHSVTSYASGEEALDHIRSRRPEIVILDVMLPGIDGVEV 63 Query: 65 ARRATELDPDLKVMFIT 81 RR ++D L V+ +T Sbjct: 64 CRRIRKMD-QLPVILLT 79 >gi|226951679|ref|ZP_03822143.1| chemotactic signal transduction system component [Acinetobacter sp. ATCC 27244] gi|226837595|gb|EEH69978.1| chemotactic signal transduction system component [Acinetobacter sp. ATCC 27244] Length = 1711 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ L+L DI MP MDG E+ Sbjct: 1593 IMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAMEQLETVKPDLMLLDIEMPRMDGFEV 1652 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R E+ DL ++ IT + + ++ + KPF L+ + LL ++ Sbjct: 1653 TNLVRHHEIHRDLPIIMITSRTGEKHRERALSLGVSQYMGKPFQEETLLENIESLLAVR 1711 >gi|190575608|ref|YP_001973453.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190013530|emb|CAQ47165.1| putative transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 457 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + L+ +D+ D+R L+ LG+ G + + N A A + + P+ L +TD+ +P+ +G Sbjct: 4 TRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL + P V IT F ++ L ++ +SKP + L V L + Sbjct: 64 IELVSEIAQHYPRTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|171321609|ref|ZP_02910538.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia ambifaria MEX-5] gi|171093108|gb|EDT38327.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia ambifaria MEX-5] Length = 451 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD +RR +++L AG++VV + +A + E ++++DI +P G++ Sbjct: 6 QVIYIEDDALVRRASVQSLQLAGFDVVGFESAEAADKAIVAETAGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 66 LLAQCRERVPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFAAERLIETVRRAL 120 >gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 234 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP MDGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFKGENYHMVIMDIMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 SMRRIRE 71 >gi|46579219|ref|YP_010027.1| chemotaxis protein CheY [Desulfovibrio vulgaris str. Hildenborough] gi|46448632|gb|AAS95286.1| chemotaxis protein CheY, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 136 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 8/116 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG- 61 +++L+ EDD + L L GYEV + +NG +R +++TDI+MPE DG Sbjct: 7 RRVLVVEDDMVTQCLLSGLLDSWGYEVHTASNGREGMAVLRCVGADVVITDIIMPEQDGF 66 Query: 62 --IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 I L RR PD+KV+ I+G AA AL+ +S A + A V+ F L +N V+ Sbjct: 67 ATIALLRRDF---PDVKVIAISGGAA-ALDMES-AIRTAHVIGADFVLPKPLNTVS 117 >gi|11498061|ref|NP_069285.1| response regulator [Archaeoglobus fulgidus DSM 4304] gi|2650175|gb|AAB90783.1| response regulator [Archaeoglobus fulgidus DSM 4304] Length = 125 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 6/119 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++++ EDD + + LG YE++ NG A K + ++L D++MP MDG Sbjct: 10 KRRVMVVEDDSAVLETVQIMLGDK-YEIIPATNGEEAVKKYKMFKPDVVLMDVMMPVMDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNP--DSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E + ++DP K++ +T +A D+ A +V+ KPF R L+ + + L Sbjct: 69 VEATKEIKKIDPQAKIIGLTAYARKKGKELLDAGA---LEVVEKPFTRRQLIEVIEKYL 124 >gi|323360120|ref|YP_004226516.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323276491|dbj|BAJ76636.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 122 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 9/117 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIEL 64 ++ EDD D+R +I L +AGY V + + G D V R EP ++ D+ MP +DG E Sbjct: 8 VIVEDDADIRSLIIAVLEQAGYVVHAASGGLEGIDLVARYEP-AVTTLDVSMPGIDGFET 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 ARR D +++ ++ A A + A ++A L+KPF R+L V LL Sbjct: 67 ARRIRAFS-DTRILMVS---ARADETEERAGRDAGADDYLTKPFRPRELRERVRLLL 119 >gi|307325781|ref|ZP_07604981.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306888569|gb|EFN19555.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 248 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL EDD+ + R + L GY V G S + P ++L D+ +P+MDGI+ Sbjct: 11 SILLIEDDEVIGRHVEAGLRSHGYAVTWTRTGGSGLAEADRSPIDVVLLDLGLPDMDGID 70 Query: 64 LARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHL 107 +AR+ + PD+ ++ +T + V + D+ A L KPF L Sbjct: 71 VARQLRDEHPDVLILILTARSEEIDVIVGLDAGA---DDYLVKPFSL 114 >gi|301164968|emb|CBW24531.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1307 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ ++R +LI++ + +V +N SA + R++ S++++D++MP+MDG Sbjct: 1054 KTILIVEDEKELREYLIESFTETFKKVYVADNAISALETCRKKQPSIIVSDVMMPQMDGF 1113 Query: 63 ELARRATELDPDLKVMFI 80 EL R ++ D+++ I Sbjct: 1114 ELCR---QIKNDIRISHI 1128 >gi|298375281|ref|ZP_06985238.1| transcriptional regulatory protein ZraR [Bacteroides sp. 3_1_19] gi|298267781|gb|EFI09437.1| transcriptional regulatory protein ZraR [Bacteroides sp. 3_1_19] Length = 439 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+ V+S ++ + A ++ EE F L+++D+ +P+ DGI+L Sbjct: 4 ILIVEDDITFSLMLTTWLGKKGFVVISSSSVSDAKRRLGEEAFDLVISDLRLPDSDGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P L ++ +T +A + + A ++KP + +L+ ++ L+ ++ Sbjct: 64 LKWLKSTHPSLPLIMMTSYAEIQTAVQAMKLGAADYIAKPLNPDELLGKIKELVRVE 120 >gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 228 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +DD D+ + + L GYE + + A+D + + F L+L DI +P+ +G Sbjct: 3 KKRILIVDDDTDLSFIISEMLEGCGYESLRAASAEEAFDILSHKSFHLILLDINLPDSEG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ ++ D+ V+F + A S L KP+ +++L++ VN L+ Sbjct: 63 FEICRQLRKV-SDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALI 118 >gi|261883998|ref|ZP_06008037.1| Transcriptional regulatory protein chvI [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 194 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66 Query: 62 IELARRATELDPDLKVMFIT 81 +EL RR + DL V+F+T Sbjct: 67 MELLRRLRQ-KSDLPVIFLT 85 >gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL J1-208] Length = 225 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|196228677|ref|ZP_03127543.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196226958|gb|EDY21462.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 547 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + R + L G+ V++ +NG A E F +++TD MP M+G++ Sbjct: 422 RVLVVDDEPNTREVVSGYLRGDGHRVMTASNGNDAVRHFMSEDFDIVITDHGMPGMNGLQ 481 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 LA ++P V+ +TGF A P+ VL KP Sbjct: 482 LAEIVHRINPAKSVILLTGF---AFGPEQQPTTIDCVLKKPL 520 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 49 LLLTDIVMPEMDGIELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L++TDI MPEMDGI+L + P L ++ +TG + + +L KPF Sbjct: 58 LIITDIEMPEMDGIQLVEQIRNYLPREACLPILVLTGAQDPQIKRRALIAGATDILFKPF 117 Query: 106 HLRDLVNEVNRLLTIK 121 ++ V LL + Sbjct: 118 DSSEMQMRVRSLLQTR 133 >gi|168187520|ref|ZP_02622155.1| sporulation initiation phosphotransferase F [Clostridium botulinum C str. Eklund] gi|169294608|gb|EDS76741.1| sporulation initiation phosphotransferase F [Clostridium botulinum C str. Eklund] Length = 119 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR + L K G+EVV +NG A + + E ++ DI MP+MDGI Sbjct: 3 RVLIVDDAAFMRMMIKDILEKNGFEVVGEASNGIKAVELYKSEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + ++DP K++ + + D+ + KPF ++ V +++ Sbjct: 63 EAVKEIKKIDPAAKIIMCSAMGQQTMVMDAIKSGAKDFIVKPFQADRVLEAVKKVI 118 >gi|119468699|ref|ZP_01611751.1| Response regulator receiver [Alteromonadales bacterium TW-7] gi|119447755|gb|EAW29021.1| Response regulator receiver [Alteromonadales bacterium TW-7] Length = 125 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR LI L Y ++V +G A+ ++++ F L++TD+ MP+MDG Sbjct: 2 KILVVDDIPLMRHVLINMLRNLNYLDIVEATDGIQAFTLLKKQSFDLVITDLYMPKMDGK 61 Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L R E V+ +T + A K + ++ KPF L+ L + +N +L Sbjct: 62 DLLNRIRNDEQLTSTPVLMVTCEDNSKTIKNVIAAKVSGIIVKPFSLKCLADHLNHVLAT 121 Query: 121 KN 122 N Sbjct: 122 AN 123 >gi|187922527|ref|YP_001894169.1| Fis family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713721|gb|ACD14945.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia phytofirmans PsJN] Length = 450 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG++V+ + SA + + ++++DI +P G++ Sbjct: 7 QVLYIEDDELVRRASVQSLQLAGFDVIGHASVESAAKTISADFSGVIVSDIRLPGASGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 67 LLAQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAL 121 >gi|94263209|ref|ZP_01287026.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456427|gb|EAT06547.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 199 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 57/106 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R L L +AGY+V + G A K L++TD++M +DG+EL Sbjct: 16 ILVVDDEELIRASLALDLTEAGYQVATAAGGDEALAKFAAAGCDLVITDLLMEGIDGLEL 75 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 RR + P + V+ +TG+ A+ ++ L KP++ +L Sbjct: 76 LRRLRQQQPGVGVIILTGYGALPSAIEALRLGADDYLLKPYNFEEL 121 >gi|39656343|gb|AAR29894.1| putative histidine kinase HHK15p [Cochliobolus heterostrophus] Length = 962 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ +R L K L KAG +V N+G A D + + F ++L D+ MP +DG+E Sbjct: 818 RVLLVEDNLINQRVLGKQLKKAGCDVTVANHGLEALDSLDRQTFDIVLMDLEMPVLDGLE 877 Query: 64 LAR--RATELDP----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R R EL+ L ++ +T + A V+ KPF DLV + L Sbjct: 878 AMRQFRKKELNECRPVRLPIIAVTANVRKEQMDTAMAAGADCVMQKPFKAADLVFMMKSL 937 Query: 118 L 118 + Sbjct: 938 I 938 >gi|159184165|ref|NP_353150.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139499|gb|AAK85935.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 448 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 9/126 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++++R +AL +G+ V + A + + ++++DI MP MDG+ Sbjct: 5 RVLLIDDEEELRFSTAQALELSGFAVTMLASAEHALELIGYSFDGVVVSDIRMPGMDGMT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPF---HLRDLVNEVN--R 116 L ++ ELDP++ V+ +TG V L NA +N + KPF +L ++ N R Sbjct: 65 LLQKVRELDPEIPVILMTGHGDVQLA--VNAMRNGAYDFIEKPFTPQYLAGIIKRANDRR 122 Query: 117 LLTIKN 122 L ++N Sbjct: 123 ALVLEN 128 >gi|15963797|ref|NP_384150.1| transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|307310985|ref|ZP_07590630.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307322004|ref|ZP_07601383.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|1705850|sp|P50350|CHVI_RHIME RecName: Full=Transcriptional regulatory protein ChvI gi|987505|gb|AAB07685.1| chvI [Sinorhizobium meliloti] gi|15072972|emb|CAC41431.1| Transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|306892342|gb|EFN23149.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899665|gb|EFN30292.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 240 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I L +DD ++ + AL GY+V + +GASA + + P L + DI MP MDG+ Sbjct: 2 QTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPQLAIFDIKMPRMDGM 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 62 ELLRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVK 113 Query: 116 RLL 118 +L Sbjct: 114 AIL 116 >gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437] Length = 226 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D+ M + AL GY+V++ +G S +D + +P L+L DI+MP +D Sbjct: 1 MGEIILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLLNRKP-DLILLDIMMPGLD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GI++ R + ++F++ V + A ++KPF L +LV V Sbjct: 60 GIQVCRWIRD-SVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARV 112 >gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 223 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++D+R L L K G++V NG + +EE L++ D++MP MDGIE Sbjct: 3 KILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVMMPGMDGIE 62 Query: 64 LAR--RATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R T+ ++ + F+T ++ +A D+ A +SKP R L++ V+ L Sbjct: 63 VCDQIRNTKGLENVLICFLTARNEDYSQIA-GLDAGAD---DYISKPIKPRVLISRVHAL 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|325298170|ref|YP_004258087.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] gi|324317723|gb|ADY35614.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] Length = 236 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED++ + + L G+ + NG +K + +++ D++MP MDG E+ Sbjct: 10 VLLVEDEETLALIIKDTLEGQGFAIRLAENGEEGIEKFFGQKPDVVVADVMMPRMDGFEM 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR D V+F+T +A + + L KPF +++L+ + LL Sbjct: 70 VRRIRRKDKQTPVLFLTARSATSDVVEGFELGGNDYLKKPFGMQELIVRIKALL 123 >gi|319900995|ref|YP_004160723.1| two component, sigma54 specific, transcriptional regulator, Fis family [Bacteroides helcogenes P 36-108] gi|319416026|gb|ADV43137.1| two component, sigma54 specific, transcriptional regulator, Fis family [Bacteroides helcogenes P 36-108] Length = 453 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ EDD L LGK G++V S ++ A A + E L+L+D+ +P+ DGI Sbjct: 2 RSILIVEDDITYGMMLKTWLGKKGFQVTSASSIARAQKHIETERVELILSDLRLPDKDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L + +E + + ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 62 DLLKWLSERNLQIPLIIMTGYADIQSAVQTMKLGARDYIAKPVNPDELLKKIHEAL 117 >gi|291575289|gb|ADE10214.1| response regulator ATP-binding [Actinoplanes liguriensis] Length = 136 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY--DKVREEPFSLLLTDIVMPEMDGI 62 +LL EDD+D+R + L G+ V+ + SA +V +LLTD+ +P + G Sbjct: 12 VLLVEDDEDLRELAAQMLEMRGFVVLVAKDPVSAIMTCRVHSGAIDVLLTDLGLPGVSGG 71 Query: 63 ELARRATELDPDLKVMFITGF 83 ELAR A+E+ P +K+++++G Sbjct: 72 ELARSASEVRPGMKIVYVSGV 92 >gi|297519750|ref|ZP_06938136.1| hybrid sensory histidine kinase TorS [Escherichia coli OP50] Length = 248 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 17 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 76 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 77 TLARQLAQQYPSL---VLIGFSA 96 >gi|294497706|ref|YP_003561406.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294347643|gb|ADE67972.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 122 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 2/104 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ +R ++ L G++V NG A + ++E F L++ D +MP G+E Sbjct: 3 KILLAEDEEVLRMLVVDTLEDEGHDVTEAENGEEALEFIKERDFDLIILDYMMPVFTGLE 62 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + ++ E+ KV+ ++ + A A +SKPF Sbjct: 63 VIQQLKEMKDKRHTKVLMLSAKSQAADQSRVLEAGAAYFMSKPF 106 >gi|256830477|ref|YP_003159205.1| Fis family two component sigma5-4 specific transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579653|gb|ACU90789.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfomicrobium baculatum DSM 4028] Length = 454 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 2 NQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 Q +L DD+ R +++ LG AG++V+ +NG+S +R +P ++L D+ MP M Sbjct: 3 QQSTVLVIDDEPAHRLMVRVVLGDAGFKVLEADNGSSGLTTLRAKPVDVVLLDMRMPGMS 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 G+++ ++ E V+ +T F V+ +S L+KP Sbjct: 63 GLDVLQKMHEEGIATPVIMLTAFGNVSSAVESMKIGAWDYLTKP 106 >gi|218781752|ref|YP_002433070.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763136|gb|ACL05602.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 886 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D+D +R L GYEVV NG + R E L+L D+ MPEMDG+E Sbjct: 7 KILTIDDEDAIRWSFASFLEDNGYEVVEAANGRLGVELFRREKPDLVLVDLRMPEMDGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 + ++ PD+ ++ ++G A VA Sbjct: 67 VLSILSKESPDVPLIVVSG-AGVA 89 >gi|253701287|ref|YP_003022476.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251776137|gb|ACT18718.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 456 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 52/105 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D++++R L L K GY+V +GA A +K R+ ++ +L DI MP MDG Sbjct: 4 KKKILVVDDEENLRHMLQVMLKKQGYQVEQAADGAQALEKARQGSYAFILCDIRMPVMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 T + V+ ++ + + +SKPF+ Sbjct: 64 RAFLAACTAAGINSTVIMMSAYGTLEDAVGCMKLGAYDYISKPFN 108 >gi|163731738|ref|ZP_02139185.1| nitrogen regulation protein [Roseobacter litoralis Och 149] gi|161395192|gb|EDQ19514.1| nitrogen regulation protein [Roseobacter litoralis Och 149] Length = 454 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + ++ + V E ++++D++MP+ + Sbjct: 1 MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLTTLLRWVGEGKGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTARALEL 120 Query: 121 KN 122 + Sbjct: 121 QQ 122 >gi|115352977|ref|YP_774816.1| two component sigma54 specific Fis family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172061829|ref|YP_001809481.1| two component, sigma54 specific, Fis family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115282965|gb|ABI88482.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia ambifaria AMMD] gi|171994346|gb|ACB65265.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia ambifaria MC40-6] Length = 451 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD +RR +++L AG++VV + +A + E ++++DI +P G++ Sbjct: 6 QVIYIEDDALVRRASVQSLQLAGFDVVGFESAEAADKAIVAETAGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 66 LLAQCRERVPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFAAERLIETVRRAL 120 >gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 227 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ D+ + L GY+V++ +NGA A +++ L++ D++MP MDGIE Sbjct: 7 RILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAVKVAKKKSPHLIILDVMMPGMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + ++ P+L+ IT A + A +A ++KP + LV++V LL Sbjct: 67 ACEQMRKI-PELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALL 123 >gi|237806823|ref|YP_002891263.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237499084|gb|ACQ91677.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 246 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 M KIL+ +DD + L L + +EV SC+ +A +++EP +L+L D+++P+M Sbjct: 1 MKNKILVVDDDIAICELLTDVLSEHVFEVRSCHLAQAALQTLQQEPDIALVLLDLMLPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAA 85 G+ L ++ PDL V+ +TG A Sbjct: 61 SGLLLLQQIRMQFPDLPVIMLTGLAT 86 >gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 226 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL EDD MR F+ K ++V NG A + L++ DI+MPEMD Sbjct: 1 MKRSILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + RR E D+ ++ IT A + ++KP R LV N L+ Sbjct: 61 GWSVCRRIRE-KSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALM 117 >gi|114324578|gb|ABI63596.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1223 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1013 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1072 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1073 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1132 Query: 119 TI 120 T+ Sbjct: 1133 TV 1134 >gi|146280476|ref|YP_001170629.1| C4 dicarboxylate transport response regulator protein [Pseudomonas stutzeri A1501] gi|14717008|emb|CAC44170.1| C4 dicarboxylate transport response regulator protein [Pseudomonas stutzeri] gi|145568681|gb|ABP77787.1| C4 dicarboxylate transport response regulator protein [Pseudomonas stutzeri A1501] Length = 464 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +V S + ++ + ++++DI MP +DG+E Sbjct: 12 QVVLIDDDPHLRQALSQTLDLAGLKVASLGDARDLAARLPADWQGVVVSDIRMPGIDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ D +L V+ ITG + L + L KPF L++ V R L ++ Sbjct: 72 LLQQLRARDSELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALALR 129 >gi|159184131|ref|NP_353073.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139468|gb|AAK85858.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 241 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I L +DD ++ + AL GY V + +GASA D + P L + DI MP MDG+ Sbjct: 2 QTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARPPQLAIFDIKMPRMDGM 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR + D+ V+F+T + + D ++KPF R LV V Sbjct: 62 ELLRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVK 113 Query: 116 RLL 118 +L Sbjct: 114 AIL 116 >gi|51893537|ref|YP_076228.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857226|dbj|BAD41384.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 123 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +ILL EDD D++R + +L + G+EV + G K +E L+L D++MPEM Sbjct: 1 MALRILLIEDDPDIQRMVQLSLKFQGGHEVSVASGGQEGIAKAEQERPDLILLDVMMPEM 60 Query: 60 DGIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG E RR A + ++F++ A + + L KPF L +++ + Sbjct: 61 DGYETCRRLKANPATASIPIVFLSARAQQSEIEKGRSLGAIGYLVKPFDPMTLSDQLEAM 120 Query: 118 L 118 L Sbjct: 121 L 121 >gi|327478698|gb|AEA82008.1| C4 dicarboxylate transport response regulator protein [Pseudomonas stutzeri DSM 4166] Length = 464 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +DD +R+ L + L AG +V S + ++ + ++++DI MP +DG+E Sbjct: 12 QVVLIDDDPHLRQALSQTLDLAGLKVASLGDARDLAARLPADWQGVVVSDIRMPGIDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ D +L V+ ITG + L + L KPF L++ V R L ++ Sbjct: 72 LLQQLRARDSELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALALR 129 >gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family protein [Actinomyces oris K20] gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] Length = 249 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++R L +L AG+EV +G A V + L++ D+++P+MDG + Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFTV 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR E D ++F+T +A ++KPF L +++ + +L Sbjct: 77 ARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAIL 130 >gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 249 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++R L +L AG+EV +G A V + L++ D+++P+MDG + Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFTV 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR E D ++F+T +A ++KPF L +++ + +L Sbjct: 77 ARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAIL 130 >gi|262196327|ref|YP_003267536.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079674|gb|ACY15643.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 1406 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 5/115 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLA+D+ DMR ++ + L + + V + +G SA + VR P L+L D++MP++ G E Sbjct: 634 RVLLADDNADMRAYVGRLLSER-FAVEAVPDGRSALEAVRARPPELVLADVMMPQLSGFE 692 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L A DP D V+ ++ A + L+KPF R+L+ V+ Sbjct: 693 LL-AAIRDDPAIRDTPVILLSARAGEEARVEGMDAGADDYLTKPFSARELLARVS 746 >gi|259046497|ref|ZP_05736898.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259036662|gb|EEW37917.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 255 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 7/87 (8%) Query: 5 ILLAEDDDDMRRFL-----IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 IL+ ED+ +R+ + ++LG + V+ NG A ++E+ +LLTDI MP+M Sbjct: 11 ILIVEDEPVIRKGIASLVDFESLGISS--VLEAENGKQAIAMIQEQAPDILLTDINMPKM 68 Query: 60 DGIELARRATELDPDLKVMFITGFAAV 86 DGI LA+ A P L+++F+TG+ V Sbjct: 69 DGITLAQLARAEFPQLRIIFLTGYDYV 95 >gi|322418890|ref|YP_004198113.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320125277|gb|ADW12837.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 456 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 51/104 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D++++R L L K GY V +GA A K +E ++ +L DI MP MDG Sbjct: 4 KKKILVVDDEENLRHMLQVMLKKQGYLVEQSADGADALAKAQEGNYAFILCDIRMPVMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + TE V+ ++ + V D +SKPF Sbjct: 64 KKFLAACTESGIGATVIMMSAYGTVDDAIDCMKLGAYDYISKPF 107 >gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 227 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ ++R + AL + GY V + +G SA ++ L++ D++MPE+DG+ Sbjct: 5 RILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPELDGLN 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ E D+ ++F++ + A ++KPF R+L V +L Sbjct: 65 LCRKLRERG-DVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVL 118 >gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1486 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ + L Y+++ NG A + + L+L DI +P ++G+E Sbjct: 1370 ILLAEDNETNITTISNYLKAKKYKLILAKNGKEAISLAQSQQPDLILMDICLPGINGLEA 1429 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 ++ +L PDLK + I A+AL D A + LSKP L++LV + LL Sbjct: 1430 IQQIRQL-PDLKDIPIIAVTALALTGDRERCLEAGANEYLSKPLKLKELVALIQSLL 1485 >gi|149182517|ref|ZP_01860990.1| two-component response regulator involved in modulation of flagellar [Bacillus sp. SG-1] gi|148849777|gb|EDL63954.1| two-component response regulator involved in modulation of flagellar [Bacillus sp. SG-1] Length = 120 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M KIL+ +D MR + L K G+EVV +G A +K +E L+ DI MPE Sbjct: 1 MANKILIVDDAAFMRMMIKDILTKNGFEVVGEAADGNQAVEKYKELSPDLVTMDITMPEK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + LD + K++ + A+ D+ + KPF ++ + + L+ Sbjct: 61 DGIAALKEIKSLDANAKIIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIQKALS 120 >gi|120603214|ref|YP_967614.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|120563443|gb|ABM29187.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|311233050|gb|ADP85904.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1] Length = 134 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 8/116 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG- 61 +++L+ EDD + L L GYEV + +NG +R +++TDI+MPE DG Sbjct: 5 RRVLVVEDDMVTQCLLSGLLDSWGYEVHTASNGREGMAVLRCVGADVVITDIIMPEQDGF 64 Query: 62 --IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 I L RR PD+KV+ I+G AA AL+ +S A + A V+ F L +N V+ Sbjct: 65 ATIALLRRDF---PDVKVIAISGGAA-ALDMES-AIRTAHVIGADFVLPKPLNTVS 115 >gi|111023259|ref|YP_706231.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822789|gb|ABG98073.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 222 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 10/111 (9%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 +LAEDD+ + L +ALG+ GY+V G +A ++ + + LL+ D+ +P MDG+E+ Sbjct: 1 MLAEDDEAIAAPLSRALGREGYDVTIEQTGPAALEQALDGAYDLLILDLGLPGMDGLEVC 60 Query: 66 RRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLV 111 R+ +L V+ +T V L+ ++ + KPF L +L+ Sbjct: 61 RQVRAHSSELAVLMLTARTDEVDFVVGLDAGAD-----DYVGKPFRLAELM 106 >gi|116623300|ref|YP_825456.1| two component sigma54-specific Fis family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226462|gb|ABJ85171.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Solibacter usitatus Ellin6076] Length = 454 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R L K GY A + ++ F + L DI MP MDG+E Sbjct: 16 RILIVDDELVVRDSLGKWFSSEGYSARPVGGAREALEVIQHGEFDIALLDIKMPGMDGME 75 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L R E D DL ++ +TG+++V Sbjct: 76 LQARLREADSDLTIIMMTGYSSV 98 >gi|309786730|ref|ZP_07681350.1| sensor torS domain protein [Shigella dysenteriae 1617] gi|308925423|gb|EFP70910.1| sensor torS domain protein [Shigella dysenteriae 1617] Length = 318 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 87 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 146 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L V+F GF+A Sbjct: 147 TLARQLAQQYPSL-VLF--GFSA 166 >gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 223 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GY V +G A ++ L++ D+ +PE+DG+E+ Sbjct: 4 VLLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGVDLIVLDLGLPELDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 64 ARRVRSEGHGVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 230 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R L L GY V +NG A + + +E L++ DI+MP MD Sbjct: 1 MNNNILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIMMPGMD 60 Query: 61 GIELARRATE 70 G+E+ RR E Sbjct: 61 GLEVCRRVRE 70 >gi|253699101|ref|YP_003020290.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251773951|gb|ACT16532.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 955 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 ILL ED++ + K L + GY V + A A + L+LTD+VMP M+G E Sbjct: 839 ILLVEDEEMLLWTTTKILEEMGYTVQQAESPAKAIAICENGKQIDLVLTDVVMPGMNGRE 898 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R PD+KV+F++G+ A + + +SKP + L ++ + L Sbjct: 899 MVDRIRSARPDIKVLFMSGYTADIVAQRGIVEEGMFYISKPLDSKQLHEKIVQTL 953 >gi|223938395|ref|ZP_03630289.1| response regulator receiver protein [bacterium Ellin514] gi|223892964|gb|EEF59431.1| response regulator receiver protein [bacterium Ellin514] Length = 154 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 44/79 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +DD +R L +AL YEVV NG A ++ E+ ++L D+ MP ++G + Sbjct: 18 KVLLVDDDISVRESLGRALESENYEVVQAANGQEALERFSEQQIDVVLLDVNMPVINGWD 77 Query: 64 LARRATELDPDLKVMFITG 82 R E++P L + IT Sbjct: 78 ALDRMQEINPFLPTVIITA 96 >gi|126731332|ref|ZP_01747139.1| nitrogen regulation protein NtrC [Sagittula stellata E-37] gi|126708243|gb|EBA07302.1| nitrogen regulation protein NtrC [Sagittula stellata E-37] Length = 456 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + +E P L V+ I+ + + + L KPF L DL+ + L Sbjct: 61 GLEMLPKISEDRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTAKALEN 120 Query: 121 KN 122 +N Sbjct: 121 RN 122 >gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia] gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + V+ +T ++ + L KPFH+ +L+ VN LL Sbjct: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALL 116 >gi|57234549|ref|YP_181366.1| response regulator [Dehalococcoides ethenogenes 195] gi|57224997|gb|AAW40054.1| response regulator [Dehalococcoides ethenogenes 195] Length = 334 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 56/117 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ +L +D+D +RR L + L GY+ ++ +N A + ++ + SL + DI MP + G Sbjct: 5 NETVLTVDDEDTIRRLLYQKLTSEGYKCLTASNATEAMEIIKSQDVSLAILDIKMPGLSG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +++ + PD V+ T + ++KPF L ++ + R L Sbjct: 65 MDIFPEIRTISPDTAVIMATAISDTDTAIACMKLGAYDYVTKPFKLDAVMMSIERAL 121 >gi|148265646|ref|YP_001232352.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399146|gb|ABQ27779.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 449 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD + +AL AGY +GA A V EE F L+L DI +P+ +G++ Sbjct: 5 KLLIIEDDPLFGEAIWEALQAAGYRTRLATSGAEALAAVAEESFDLMLQDIRLPDANGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R + P + + +TGFA V ++ L+KPF + L+ ++ ++L K Sbjct: 65 ILREILQRQPHSRALVMTGFATVDSAVEAMKIGAFDFLTKPFPMEMLLMKLQKVLEFKQ 123 >gi|117925093|ref|YP_865710.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608849|gb|ABK44304.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 871 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 I+L +D+ D+ L +AG+ V N A++ + +P + L++TD MP M G Sbjct: 755 IMLVDDEPDVLEAAQLQLKRAGFYVQPFQNPLHAWEAFQRQPDAYDLIITDHNMPGMVGS 814 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +LA+ +L D+ ++ TG++ + A L KP ++LV+E RLLT Sbjct: 815 QLAKLILQLRDDIPIILCTGYSEELDEEQAKAMGIQAYLMKPLLGKELVHEATRLLT 871 >gi|326801872|ref|YP_004319691.1| response regulator receiver sensor signal transduction histidine kinase [Sphingobacterium sp. 21] gi|326552636|gb|ADZ81021.1| response regulator receiver sensor signal transduction histidine kinase [Sphingobacterium sp. 21] Length = 528 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L A+DD +MR + + L K Y V NG A + + L+L+DI+MP MDGI+L Sbjct: 43 VLFADDDANMREY-VSCLLKTQYRVTVVQNGIMALELAKTTQPDLILSDIIMPGMDGIQL 101 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +A DP D+ ++ ++ A+ A DS L KPF +L+ + +T+K Sbjct: 102 L-QALRQDPRTQDIPLILLSIRASQASKIDSFDAGADDYLVKPFTPPELLARIKAHITLK 160 >gi|323158187|gb|EFZ44281.1| sensor protein torS domain protein [Escherichia coli E128010] Length = 255 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 24 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 83 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 84 TLARQLVQQYPSL---VLIGFSA 103 >gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 238 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +IL+ +D++ +RR L L K GYE+ +G A K +S++L D+++P MDG Sbjct: 5 SNRILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVMLPGMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 IE+ R + +M A + N + +V + KPF R+++ V Sbjct: 65 IEVCTRLRQTKSTPVIML------TAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKA 118 Query: 117 LL 118 +L Sbjct: 119 IL 120 >gi|302386751|ref|YP_003822573.1| two component transcriptional regulator, AraC family [Clostridium saccharolyticum WM1] gi|302197379|gb|ADL04950.1| two component transcriptional regulator, AraC family [Clostridium saccharolyticum WM1] Length = 538 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I+L +D++++R+ +IK + AG+ VV NG A +K+ ++LTDI MP MDG Sbjct: 6 IILVDDEEEVRKSIIKKIEWQSAGFRVVGDAENGEDAMEKIEVLEPDVVLTDIRMPYMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + LA + + P +KV+ +G+ + + + KP ++ +L + + R+ Sbjct: 66 LALAEKVRQRYPSMKVVIFSGYDDFEYAQRAIKLNVTEYILKPVNVEELTSILKRI 121 >gi|302676804|ref|XP_003028085.1| histidine kinase [Schizophyllum commune H4-8] gi|300101773|gb|EFI93182.1| histidine kinase [Schizophyllum commune H4-8] Length = 1569 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 18/128 (14%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD+D R+++ L EVV+ +G +A Y + E+P LL+TD++MP M+G Sbjct: 707 KVLLTEDDEDARQYIHSILRGIVQEVVTVPDGMAALEYIESSEKPPDLLVTDMMMPRMNG 766 Query: 62 IELARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKV----------LSKPFHLRDL 110 EL R T D ++ M A+ L + +A+V L KPF +L Sbjct: 767 AELLRTLTHHHDSSIQAM-----PAIVLTARTGQEGDARVDGLLHGPVDYLLKPFSATEL 821 Query: 111 VNEVNRLL 118 V L Sbjct: 822 TQRVETRL 829 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 15/127 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-------EPF-SLLLTDIVM 56 +L+ ED+ +R L + L KAG+ V + N+G A + E +P+ S++L D+ M Sbjct: 1419 VLVVEDNAVNQRLLRRQLEKAGFLVDTANHGLQALQLLEEGALATASQPYPSVVLMDLEM 1478 Query: 57 PEMDGIELARRATELD-------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 P MDG+E R L+ P + + ITG A + A +V KP+ L D Sbjct: 1479 PVMDGLEATSRIRALEEEGKLPPPKMPIFAITGNARQGQVDAALAVGMDEVFIKPYRLAD 1538 Query: 110 LVNEVNR 116 +V ++R Sbjct: 1539 VVARIDR 1545 >gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 52/113 (46%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ ED++ + F+ K L +G+ GA A D F L+L D+ +P+ DG Sbjct: 2 SRILIVEDEERIASFVRKGLDASGFTTTVVGTGAEAVDYAVTGGFDLMLLDLGLPDTDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ RR L D+ V+ +T V ++KPF +L+ V Sbjct: 62 DVLRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARVR 114 >gi|307153247|ref|YP_003888631.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983475|gb|ADN15356.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 379 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L + GY+V NG A + V+ P L+L DI MP M+G ++ Sbjct: 6 ILVVDDTPDNVRLLATMLSEKGYKVRKALNGQIAINTVQTVPPDLILLDINMPGMNGYQV 65 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 A ++ E D+ V+FI+ V + ++KPF +++ V LTI Sbjct: 66 CQALKSDEKTQDIPVIFISALDDVLDKVKAFKVGGVDYITKPFQGEEILVRVENQLTI 123 >gi|71737413|ref|YP_274098.1| response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557966|gb|AAZ37177.1| response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 458 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G+E Sbjct: 71 KLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMPQMGGLE 130 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 L R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 131 LIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 186 >gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex domain structure [Aromatoleum aromaticum EbN1] Length = 1519 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD ++ +++ L G+ +GA A + R ++L+LTD+ MP+MDG L Sbjct: 1257 ILVAEDDPINKKVILEQLALLGHAAEIAGDGAEALEMWRRGTYALILTDLHMPKMDGYRL 1316 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 + + + + I A AL +S + A + L+KP L L ++R L Sbjct: 1317 TEAIRQAEGEAARIPIVALTANALQSESRRAREAGMDEYLTKPVRLEVLGAHLDRWL 1373 >gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 233 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R L ++L GY VV+ +G A + + E +++ D++MP MDG+E Sbjct: 2 KVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ L+KPF L +L+ V L+ Sbjct: 62 VCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLV 116 >gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae] gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + V+ +T ++ + L KPFH+ +L+ VN LL Sbjct: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALL 116 >gi|328952445|ref|YP_004369779.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328452769|gb|AEB08598.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D+ + + L L G+EV++ +G +A V EE L+ DI +P MD Sbjct: 1 MARTILVVDDEPPILQTLSGILQDEGFEVLTAQDGETALKVVEEETPDLVFLDIALPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R E P V+ I+ F +V + + KP H ++ V L + Sbjct: 61 GLEVLRHLKEQQPLTPVVMISAFGSVENAVKATRWGAYDFIEKPPHADKIIVTVRNALEM 120 >gi|285265587|gb|ADC35361.1| histidine kinase protein [Alternaria alternata] Length = 1329 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1119 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1178 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1179 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1238 Query: 119 TI 120 T+ Sbjct: 1239 TV 1240 >gi|240142651|ref|YP_002967164.1| hypothetical protein MexAM1_META2p1039 [Methylobacterium extorquens AM1] gi|240012598|gb|ACS43823.1| Hypothetical protein MexAM1_META2p1039 [Methylobacterium extorquens AM1] Length = 272 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 2/108 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-M 59 + +L D+ +R +I L + GY V + + ++ + +L+TD+ +P M Sbjct: 42 GETVLFIVDEPSVRMLIIDLLTEMGYAAVQATDDVAGLKVLQFDARIDMLVTDVGLPGGM 101 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +G+++A A P+LKV+FITG+A A D +VL+KPF L Sbjct: 102 NGLQMADAARAHRPELKVLFITGYAECADIDDGRLGSGMQVLAKPFAL 149 >gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 919 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ R FL L +AG +V +G A + + +EP L+L DI MPEMDG E Sbjct: 678 RVLLAEDNQVNRLFLKHFLAEAGCQVRLAGSGLQALELLCQEPADLVLMDIQMPEMDGAE 737 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR E + + M + A ++ D + + +SKP + +L + R+L Sbjct: 738 ATRRIREGEAGDAARAMPVVALTAYSMKGDRERFLSVGLDDYVSKPVDVDELFMVMRRVL 797 >gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1559 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLA+D+ DMR ++++ L + Y++ + +G +A VR L+L DI+MP +DG E Sbjct: 638 RVLLADDNADMRDYVMRLL-REHYDIAAVADGQAALALVRHWKPDLVLADIMMPGLDGFE 696 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A R + L V+ ++ A + L KPF R+L+ V L Sbjct: 697 LLQALRESPATQQLPVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQL 753 >gi|163789670|ref|ZP_02184108.1| Chemotaxis signal receiving protein CheY [Carnobacterium sp. AT7] gi|159875202|gb|EDP69268.1| Chemotaxis signal receiving protein CheY [Carnobacterium sp. AT7] Length = 120 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + +++ +D MR L L K GY VV+ NG A +K + E +L+ DI MPEM Sbjct: 1 MTKNVMIVDDAAFMRMKLKDILEKNGYTVVAEAQNGLEAVEKYKAEKPNLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 DG+E + DP +V+ + + D+ + KPF Sbjct: 61 DGVEALKEIKAFDPAARVVMCSAMGQQGMVMDAIRSGAVDFIVKPF 106 >gi|156977303|ref|YP_001448209.1| transmembrane sensor histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|167009128|sp|A7N6S2|CQSS_VIBHB RecName: Full=CAI-1 autoinducer sensor kinase/phosphatase CqsS; AltName: Full=Cholerae quorum-sensing sensor gi|156528897|gb|ABU73982.1| hypothetical protein VIBHAR_06089 [Vibrio harveyi ATCC BAA-1116] Length = 681 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 40/65 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +R+F L K G+EV+ +G A + + E L+L DI MP MDG+ Sbjct: 563 RTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGV 622 Query: 63 ELARR 67 E +R+ Sbjct: 623 EASRQ 627 >gi|170738577|ref|YP_001767232.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|220925278|ref|YP_002500580.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|168192851|gb|ACA14798.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] gi|219949885|gb|ACL60277.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 238 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY + + +GASA D ++ P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALETEGYRIQTYTDGASALDGLKHSPPDLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIRKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|167031306|ref|YP_001666537.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida GB-1] gi|166857794|gb|ABY96201.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida GB-1] Length = 468 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L +D +R+ L + L AG +VV+ + +++ + ++++DI MP +DG++ Sbjct: 12 QVILVDDAPHLRQALSQTLDLAGLKVVALADAQGLAERIEADWPGVVVSDIRMPGIDGLQ 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + D +L V+ ITG V L + L KPF L++ V R L ++ Sbjct: 72 LLEQLHSRDSELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFATDALLDSVRRALALR 129 >gi|50897996|gb|AAT86007.1| CqsS [Vibrio harveyi] Length = 681 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 40/65 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +R+F L K G+EV+ +G A + + E L+L DI MP MDG+ Sbjct: 563 RTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGV 622 Query: 63 ELARR 67 E +R+ Sbjct: 623 EASRQ 627 >gi|32400388|dbj|BAC78683.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|300865119|ref|ZP_07109944.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300336890|emb|CBN55094.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 915 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 12/125 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D + R ++ L G+EV NGA DK E ++TD++MP MDG Sbjct: 704 RKILVVDDRWENRSVIVHLLSPIGFEVFEATNGAEGLDKANELIPDAIITDLIMPIMDGF 763 Query: 63 ELARRATELDPDLKVMFITGFAAV-------ALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR D + I A+V +L +NA L KP + +L + Sbjct: 764 ELLRRLRISDQFKDTVVIVSSASVFEADQYKSLEAGANA-----FLPKPVQISELFEVLQ 818 Query: 116 RLLTI 120 + L + Sbjct: 819 KQLGV 823 >gi|224540428|ref|ZP_03680967.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM 14838] gi|224517942|gb|EEF87047.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM 14838] Length = 1369 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD D+R +L K+L + YE++ NG YDK + L+L+DI+MP+ +G+EL Sbjct: 1116 VLLVEDDKDVRDYLHKSL-ENDYEIIEAANGVKGYDKAVQFFPDLVLSDIMMPKRNGLEL 1174 >gi|222055255|ref|YP_002537617.1| response regulator receiver protein [Geobacter sp. FRC-32] gi|221564544|gb|ACM20516.1| response regulator receiver protein [Geobacter sp. FRC-32] Length = 124 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ ED++ + + L GY VV +G +A ++V+ L++ D+++PEMDG Sbjct: 3 SKKILIVEDEESLLKLESILLSSKGYSVVGVMDGKAALEEVKANRPDLVVLDVMLPEMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E+ R E +P+ + + A N D K A ++KPF ++ + L+ Sbjct: 63 FEVCRHIKE-NPETSSIPVVMLTAKKSNNDVERGKQAGAEAYITKPFKSAKVIEVIEGLI 121 Query: 119 T 119 + Sbjct: 122 S 122 >gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170] gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170] Length = 228 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 KILL +D+ D+ + L GY+V + NNG K +++ L++ D++MPEMDGI Sbjct: 7 KILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKKKQPHLIILDVMMPEMDGIE 66 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ L+ D + F+T ++KP + LV++V LL Sbjct: 67 ACEIIRKTVGLE-DTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKALL 123 >gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] Length = 249 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++R L +L AG+EV +G A V + L++ D+++P+MDG + Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFTV 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR E D ++F+T +A ++KPF L +++ + +L Sbjct: 77 ARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAIL 130 >gi|330906611|ref|XP_003295535.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1] gi|311333095|gb|EFQ96363.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1] Length = 1329 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1118 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1177 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1178 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1237 Query: 119 TI 120 T+ Sbjct: 1238 TV 1239 >gi|309779231|ref|ZP_07673994.1| sigma-54 dependent DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|308922035|gb|EFP67669.1| sigma-54 dependent DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 452 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L EDDD +R +AL A V S + SA + +P ++++TD+ +P DG+ + Sbjct: 17 VFLIEDDDVVRLGCEQALSLADVPVQSFADAESALAALATQPPAVVVTDVRLPGRDGLAV 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + D L V+ ITG V + + + KPFH L++ V R L Sbjct: 77 LREMLQHDRQLPVILITGHGDVTMAVAAMRAGAYDFMEKPFHSERLIDVVRRAL 130 >gi|300867327|ref|ZP_07111985.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300334681|emb|CBN57151.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 227 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + L +AL Y V S +G SA+DK + + L+LTD+ +P+++GI Sbjct: 2 RILLVEDDSQLIASLTEALVAQRYIVDSARDGESAWDKTQGFVYDLILTDVTLPKLNGIG 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 L R + ++ +T +L+ A V + KPF L++L+ ++ LL Sbjct: 62 LCERLRDRGYLSPILMLTA-RDTSLDKVIGLDAGADVYMVKPFQLQELLAQIRALL 116 >gi|296273627|ref|YP_003656258.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296097801|gb|ADG93751.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 220 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD D R + + L Y+V NG A +++ E+ + LL+ DI +P ++G +L Sbjct: 3 ILLLEDDFDYRISVKEYLESLDYKVDDFENGEEALNEIYEKTYHLLILDIKVPNLNGYDL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + D ++ V+FIT + + KPF L++L V +++ Sbjct: 63 VRTLKKDDKNIPVIFITSLTDINNLSMGYELGCNDYIKKPFSLKELKYRVEQVI 116 >gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas albilineans GPE PC73] gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas albilineans] Length = 227 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + V+ +T ++ + L KPFH+ +L+ VN LL Sbjct: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALL 116 >gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 830 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++ L + GY NG A D V + L+L D+ MPEM+GIE Sbjct: 707 RILVAEDNVVNQKVARLLLRRLGYRCDVVANGLEAVDAVSRRRYDLVLMDMQMPEMNGIE 766 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 RR + I A A+ D A +A + +SKP + DLV + RL Sbjct: 767 ATRRLRGEARPGSPLHIVAMTANAMREDREACLSAGMDDFVSKPLRVSDLVTVLERL 823 >gi|322421927|ref|YP_004201150.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320128314|gb|ADW15874.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M18] Length = 715 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+ MR + AL +AG+ V NG A ++ R+ ++L D++MPE+DG Sbjct: 12 VLVVDDDEMMRDLAVAALEQAGFFVAEAENGRVALEQFRQLQPDIVLLDVMMPELDGFST 71 Query: 65 ARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R L D+ V+ +TG + ++KP H L + V +L Sbjct: 72 CRALRGLPGGDVPVLMMTGLDDTHAIEKAYHAGATDFITKPIHWAILRHRVRYML 126 >gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1705 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 7/121 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE----EPFSLLLTDIVM 56 ++ +IL+ +D+ R L + L G+ V S +G A D++R EPF L+L D M Sbjct: 1215 LSLRILVVDDNATAREILTQMLLAFGFAVESAASGREALDRLRVVDRLEPFDLVLMDWKM 1274 Query: 57 PEMDGIELARR---ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 PEMDGIE RR TE+ ++ +T + A + + + L+KP +L++ Sbjct: 1275 PEMDGIETIRRLCAQTEITQAPALIMVTAYGHEAAHQVAVELGVSGFLTKPVTSSNLLDA 1334 Query: 114 V 114 + Sbjct: 1335 I 1335 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +LL ED++ + ++ L G V NG A +++ E F +L D MP MDG Sbjct: 1368 VLLVEDNELNQELALELLVSNGLSVEIAANGREALERLAGESRFDGVLMDCQMPVMDGYT 1427 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 A RA P+L + + A ++ D A + + KP ++R++ Sbjct: 1428 -ATRAIREQPELAGLPVIAMTANVMSGDREKALAAGMNDHIGKPINVREM 1476 >gi|268678898|ref|YP_003303329.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268616929|gb|ACZ11294.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 219 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD + + +L GY V + ++G A D + E+ + L L DI +P MDG E Sbjct: 2 KILLLEDDFTYQESIQDSLEAMGYSVDAYDDGEKALDALFEKQYHLALLDIRVPSMDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D+ ++FIT + L KPF L++L V + L Sbjct: 62 ILKEIRKAKLDVPIIFITSLTDINNLSLGYELGCNDYLRKPFSLKELQYRVCQTL 116 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++LL EDD + LG+ G VV +G A D +R +PF L++ D+ M +MDG Sbjct: 1020 DRRVLLVEDDQVSAVAGVALLGRHGAAVVHVRSGQEALDALRRQPFDLVVMDVQMQDMDG 1079 Query: 62 IELARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 IE R A E ++ V+ +T A A ++KP +R+++ Sbjct: 1080 IEATMRIREGEAGETVRNIPVIALTACAMAGDRERFLAAGMNSYVAKPMDIREML 1134 >gi|188583869|ref|YP_001927314.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|179347367|gb|ACB82779.1| response regulator receiver protein [Methylobacterium populi BJ001] Length = 120 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 8/119 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDI-VMPEM 59 + +L+ ED++ + +I AG+ V+S AY ++ E LL TDI ++ ++ Sbjct: 4 KRTVLVVEDEEMLLNAVIMEFEDAGFAVLSAGTAEEAYGLLQGAERVDLLFTDIRLLGQL 63 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-KPFHLRDLVNEVNRL 117 DG +LA RA L P L V+++TG++A + +A VL KP+ + ++N +L Sbjct: 64 DGWDLAERARALHPALPVIYVTGYSA-----EQPRQVSASVLVMKPYRMTAIMNAAQQL 117 >gi|170742982|ref|YP_001771637.1| histidine kinase [Methylobacterium sp. 4-46] gi|168197256|gb|ACA19203.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 544 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-M 59 + IL+ +D D+ L GY V++ NG A D + LL +D++MP M Sbjct: 419 TETILIVDDRQDVAELARTILQDFGYTVLTAANGREALDVLDGHRRVDLLFSDLIMPGGM 478 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +G+ LAR A P LKV+ TG+A +L +V++KP+ Sbjct: 479 NGVVLAREARRRQPRLKVLLTTGYAEASLERTDVGGSEFEVINKPY 524 >gi|120601068|ref|YP_965468.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120561297|gb|ABM27041.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris DP4] Length = 459 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R L L GY ++G +A +KVRE+ +L D+ M M GIE Sbjct: 6 VLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARMGGIEA 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E +P + V+ +T +++V ++ L+KP L + + R L Sbjct: 66 LRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERAL 119 >gi|114324566|gb|ABI63590.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|114324570|gb|ABI63592.1| two-component osmosensing histidine kinase [Alternaria longipes] gi|224798966|gb|ACN62988.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|85858432|ref|YP_460634.1| CheY-like domain-containing protein [Syntrophus aciditrophicus SB] gi|85721523|gb|ABC76466.1| cheY-like receiver domain protein [Syntrophus aciditrophicus SB] Length = 167 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + ILL +D+D + + L GY V S NG A RE+ L++ D++MP++ Sbjct: 46 ETILLVDDEDVNIEVMSEILEMLGYRVFSAENGQEALRIYREKWREIDLVILDMIMPDLK 105 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++ E++P +V+ TG+ D + + KPFH+ +L +V ++L Sbjct: 106 GGDVFDLMREMNPRARVILSTGYGWKGQAADIMSRGCRAFIKKPFHIEELSRKVRQVL 163 >gi|77460442|ref|YP_349949.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384445|gb|ABA75958.1| putative two-component response regulator [Pseudomonas fluorescens Pf0-1] Length = 240 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 38/59 (64%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL EDD + ++ + LG++G++V C NG+ R +PF ++L DI++P +DG+ Sbjct: 10 RILSIEDDPVLGAYVHEHLGRSGFQVTWCQNGSEGLSIARRQPFDVVLMDILLPGLDGL 68 >gi|120553043|ref|YP_957394.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120322892|gb|ABM17207.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 1182 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ +IL AED+D RR + +G+ G E+V +NGA A ++ E F L+L DI MP M+ Sbjct: 819 LSGRILCAEDNDVNRRLVSLLVGRTGAELVHVSNGAEALERATREHFDLILMDIQMPVMN 878 Query: 61 G 61 G Sbjct: 879 G 879 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+DD R + + L + G E + NG A + E L+L D MP MDG+ Sbjct: 953 KVLVAEDNDDNRGLVERMLRRTGAEPLLVTNGEEAVRRALSETVKLVLMDRHMPGMDGVA 1012 Query: 64 LAR 66 R Sbjct: 1013 ATR 1015 >gi|46204510|ref|ZP_00049889.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 278 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 ++L+ ED+ ++ RF + L + G+ V N +A ++ PF + +D+VMP M G Sbjct: 157 RVLVVEDNLEVGRFCTQILEELGHHPVWAENAEAALTELERAATPFDAVFSDVVMPGMGG 216 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I LAR E P L V +G++ V D++ ++L KP+ +L Sbjct: 217 IALARILREKFPALPVALTSGYSHVLAQDDTH---GFELLRKPYSAEEL 262 >gi|327441456|dbj|BAK17821.1| FOG: CheY-like receiver [Solibacillus silvestris StLB046] Length = 109 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 49/95 (51%) Query: 24 KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 K G+ NG A +E +L D+ +P MDG+E+ R E P+L VM +T + Sbjct: 9 KEGFTTYLAANGFDAIKIAQENELDCVLLDMKIPGMDGLEILARLKEEHPELPVMMMTAY 68 Query: 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +N K +KPF++ ++ +EVN+L+ Sbjct: 69 VEQHMMDTANELGVLKYFTKPFNIFEVRDEVNKLV 103 >gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 229 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ L + L + GY V++ +G SA R E L+L DI+MP MD Sbjct: 1 MSKTILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G + R+ + + V+ IT A + L+ ++ + KPF +R+L + Sbjct: 61 GYQFLRQFRQ-ERQTPVIIITAREEETDAVLGLDLGAD-----DYIIKPFRMRELAARIR 114 Query: 116 RLL 118 +L Sbjct: 115 AIL 117 >gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 242 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + R L L K GYE +G +A E + +L DI++P++D Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R + +M ++ + A+ L D ++KPF R+L+ Sbjct: 61 GIEVCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADD-------YMTKPFSPRELMAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|322419733|ref|YP_004198956.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320126120|gb|ADW13680.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 511 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 3/115 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D+ F + L + GYEVV+ N A + F++ L D+ +P+ DGI Sbjct: 7 QILIIDDERDVCTFFRRLLARRGYEVVTAANEPEALAALEAGRFNVALVDLKLPDTDGIT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L P +V+ +TG++ V + + L KPF D ++++ +L+ Sbjct: 67 LLEIIKSRQPSCEVIIMTGYSTVKTAVTAMQLGAYEYLEKPF---DDIDQIEQLI 118 >gi|255282781|ref|ZP_05347336.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] gi|255266802|gb|EET60007.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] Length = 217 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + + L KAGY+ +G A DK+ ++ + L+L DI++P+++G E Sbjct: 3 KILIVEDEEAIANLIRMNLVKAGYQCELAFDGEEAADKIAQKSYDLILLDIMLPKLNGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A + D+ V+F+T ++KPF + +L+ V +L Sbjct: 63 VLEYAKSV--DIPVIFLTAMGETQQKVKGLRLGAEDYIAKPFEIAELLARVETVL 115 >gi|255280860|ref|ZP_05345415.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] gi|255268797|gb|EET62002.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] Length = 232 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-- 61 +IL+ EDD+D+++ L L GY VV +G K E L+L D+++P++DG Sbjct: 3 QILVIEDDEDIQKILKNYLCGNGYGVVLAGDGVEGIHKFHEHTCDLVLLDVMLPKIDGFG 62 Query: 62 -IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR +E + VM +T K ++KPF ++ L+ ++ +L Sbjct: 63 VLELIRRESE----VPVMMLTALEEEEYQIRGLDLKADDYITKPFSVQVLLRKIAAVL 116 >gi|160883013|ref|ZP_02064016.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483] gi|156111485|gb|EDO13230.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483] Length = 1347 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+DD+R ++ + Y +++ +G ++ +E ++++DI+MP MDGIEL Sbjct: 1093 ILVVEDNDDIREYIATSF-STNYRILTAADGKGGLEQAQEFIPDIIISDIMMPVMDGIEL 1151 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ E + V+ +T ++ + L+KPF + L + V+ LL Sbjct: 1152 CKQIKEDVCTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLL 1207 >gi|114324568|gb|ABI63591.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|114324564|gb|ABI63589.1| two-component osmosensing histidine kinase [Alternaria longipes] gi|114324574|gb|ABI63594.1| two-component osmosensing histidine kinase [Alternaria longipes] gi|114324576|gb|ABI63595.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|83591222|ref|YP_431231.1| response regulator receiver domain-containing protein [Moorella thermoacetica ATCC 39073] gi|83574136|gb|ABC20688.1| response regulator receiver domain protein (CheY-like) [Moorella thermoacetica ATCC 39073] Length = 124 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 58/113 (51%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ +D +RR + +AL +AG+ V +G A ++ E SL++ D+ MP M+G+E Sbjct: 1 MVIDDQPGVRRLIAEALKQAGFNVTVATDGQEALGEIALEEPSLVILDMKMPGMNGVEFL 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L V+ IT + + L ++ + L KPF L DL + V + L Sbjct: 61 QELRRRFLALPVIVITAYNELDLVEQASKLGASYYLQKPFDLEDLYHLVRQAL 113 >gi|37521826|ref|NP_925203.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212825|dbj|BAC90198.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 181 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D D FL+ AL G EVV+ G + V + LL+ D++MP++DG Sbjct: 59 NPRVLVVDDQPDNVMFLMLALEMEGLEVVAAGGGRECLELVHRQAPQLLVLDVMMPDLDG 118 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ R DP+L + A +S +P+ ++L KP L +L V LL Sbjct: 119 RQVLARLRS-DPELPHFPVMMLTADRSPLESYSPRPDRLLHKPVALDELTAAVRELL 174 >gi|32400384|dbj|BAC78681.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|32400380|dbj|BAC78679.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|114321770|ref|YP_743453.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228164|gb|ABI57963.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkalilimnicola ehrlichii MLHE-1] Length = 456 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++R + + L GY V + ++GASA + +R+ L+L DI MP++DG+ Sbjct: 5 QILVVDDEQEIRDLVEEILKDEGYRVRTAHDGASAREAMRDPVPDLVLLDIWMPDVDGVT 64 Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + TE P V+ ++G V ++ + KP + L+ V R L Sbjct: 65 LLKEWTEGGGPACPVVMMSGHGTVETAVEATRLGAWDFIEKPLSMPKLLLTVERAL 120 >gi|332665137|ref|YP_004447925.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332333951|gb|AEE51052.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 228 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L EDD + L GY++ C +G A D ++ + F L + D+++PE+D Sbjct: 1 MKAHLLYVEDDASLSFVTRDNLELNGYQITCCADGKEAMDLIKNQRFDLCILDVMLPEVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA+ + D ++ ++F++ + + L+KP+ + +L+ +V L Sbjct: 61 GFTLAKEIRKYDGEVPILFLSAKSLKEDRLEGLRIGGDDYLTKPYSIEELLLKVEIFL 118 >gi|312887145|ref|ZP_07746749.1| response regulator receiver protein [Mucilaginibacter paludis DSM 18603] gi|311300457|gb|EFQ77522.1| response regulator receiver protein [Mucilaginibacter paludis DSM 18603] Length = 133 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 8/120 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q IL+ ED+DD+R + L AG++V + N G A +++ L++ DIVMP MD Sbjct: 1 MKQNILVIEDNDDIRDGTAELLTLAGFDVTTANCGQQAILQIQSNIPRLIICDIVMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G E+ L + FI + A + + K K+ L KPF ++L+N +N Sbjct: 61 GFEI---LAYLRKRSRTRFIPFIFSTAKSEPVDVYKARKLGVANYLIKPFDDKELMNCIN 117 >gi|301310705|ref|ZP_07216644.1| transcriptional regulatory protein ZraR [Bacteroides sp. 20_3] gi|300832279|gb|EFK62910.1| transcriptional regulatory protein ZraR [Bacteroides sp. 20_3] Length = 439 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+ V S ++ + A ++ EE F L+++D+ +P+ DGI+L Sbjct: 4 ILIVEDDITFSLMLTTWLGKKGFVVRSSSSVSDAKRRLGEEAFDLVISDLRLPDSDGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P L ++ +T +A + + A ++KP + +L+ ++ L+ ++ Sbjct: 64 LKWLKNTHPSLPLIMMTSYAEIQTAVQAMKLGAADYIAKPLNPDELLGKIKELVHVE 120 >gi|298505766|gb|ADI84489.1| response receiver sensor histidine kinase response regulator, PAS, PAC and GAF domain-containing [Geobacter sulfurreducens KN400] Length = 824 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPE 58 ++ +L+ ED++ + ++ L GY V S + A + + RE LL+TD++MP Sbjct: 702 SESVLVVEDEEGVLNLVVHTLSARGYRVFSTASPVEAMEIFSRNRER-ICLLVTDVIMPG 760 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G LA DLK++F++G+ P + + + KPF L +V LL Sbjct: 761 MSGPLLAENLRGQREDLKILFMSGYTDDTAIPSEASDERTSFIMKPFTPDALAGKVRELL 820 >gi|227892817|ref|ZP_04010622.1| two-component system regulator [Lactobacillus ultunensis DSM 16047] gi|227865458|gb|EEJ72879.1| two-component system regulator [Lactobacillus ultunensis DSM 16047] Length = 238 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 42/68 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L YE V NNG D E+ F +L D+++P+++G+E Sbjct: 3 KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALEQNFDAILLDLMLPDLNGLE 62 Query: 64 LARRATEL 71 +ARR ++ Sbjct: 63 IARRVRQV 70 >gi|189197047|ref|XP_001934861.1| signal transduction histidine-protein kinase barA [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187980809|gb|EDU47435.1| signal transduction histidine-protein kinase barA [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1326 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1118 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1177 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1178 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1237 Query: 119 TI 120 T+ Sbjct: 1238 TV 1239 >gi|160885437|ref|ZP_02066440.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483] gi|156109059|gb|EDO10804.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483] Length = 1339 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++R ++ K G + ++ NG A +++ ++ L+++DI+MPEMDG+ Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKAPDLVISDIMMPEMDGLT 1142 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R+ + + +L + + A D+ N +A ++ KPF++ L V L+ Sbjct: 1143 LCRKIKQ-NVNLNHIPVILLTAKTREEDNLEGLNTGADAYIM-KPFNIEILQKTVENLIN 1200 Query: 120 IK 121 + Sbjct: 1201 TR 1202 >gi|153832042|ref|ZP_01984709.1| CqsS [Vibrio harveyi HY01] gi|148871657|gb|EDL70498.1| CqsS [Vibrio harveyi HY01] Length = 661 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 40/65 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +R+F L K G+EV+ +G A + + E L+L DI MP MDG+ Sbjct: 543 RTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGV 602 Query: 63 ELARR 67 E +R+ Sbjct: 603 EASRQ 607 >gi|114324572|gb|ABI63593.1| two-component osmosensing histidine kinase [Alternaria longipes] gi|224798968|gb|ACN62989.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|51832259|gb|AAU10313.1| two-component histidine kinase [Alternaria brassicicola] Length = 1328 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1119 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1178 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1179 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1238 Query: 119 TI 120 T+ Sbjct: 1239 TV 1240 >gi|51832271|gb|AAU10319.1| two-component histidine kinase [Alternaria brassicicola] Length = 1328 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1119 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1178 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1179 ATAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1238 Query: 119 TI 120 T+ Sbjct: 1239 TV 1240 >gi|39996755|ref|NP_952706.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983636|gb|AAR35029.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 824 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPE 58 ++ +L+ ED++ + ++ L GY V S + A + + RE LL+TD++MP Sbjct: 702 SESVLVVEDEEGVLNLVVHTLSARGYRVFSTASPVEAMEIFSRNRER-ICLLVTDVIMPG 760 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G LA DLK++F++G+ P + + + KPF L +V LL Sbjct: 761 MSGPLLAENLRGQREDLKILFMSGYTDDTAIPSEASDERTSFIMKPFTPDALAGKVRELL 820 >gi|73748783|ref|YP_308022.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73660499|emb|CAI83106.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 1262 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R + L + GY V C+ A D + + ++L DI MP + G+EL Sbjct: 1143 VLVIDDEAAIRALIRIVLTQDGYRVDECDVPQKAMDMISNNNYDVILLDIRMPGVSGLEL 1202 Query: 65 ARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 T P + +V+FITG + A + K ++KPF++ L N +N +L+ N Sbjct: 1203 YSEITAKWPQMAKRVIFITGDTSDASISNLMVAKGIPCINKPFNIATLKNTLNSILSRAN 1262 >gi|32400386|dbj|BAC78682.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|32400382|dbj|BAC78680.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|148251849|ref|YP_001236434.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146404022|gb|ABQ32528.1| putative sensor histidine kinase with a Response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 716 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +L+ ED+ D+ R +AL + GY +N A +++ + F ++ TD+VMP M G+ Sbjct: 587 VLVVEDNIDVGRSATEALAELGYLTTLVDNARDALEELIDGGSRFDVVFTDVVMPGMTGL 646 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELA L+ ++ ++ +G++ V +N ++L KP+ + +L +++++ + Sbjct: 647 ELAEEIRRLELNIPIVLASGYSHVLAQQGTNG---FELLRKPYSIEELSRVLHKVVPV 701 >gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 260 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A + + L++ D+ +P MDG+E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 152 >gi|329927731|ref|ZP_08281843.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328938309|gb|EGG34702.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 223 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD D+ + + L + GYEV+ NG A + E +L + D++MP MDG Sbjct: 2 KILVVDDDYDILQLVTIHLTREGYEVLQAQNGQYALKLLEETEVNLAIVDVMMPGMDGFS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L + T+ + ++ V+ +T ++ + L KPF ++L+ V Sbjct: 62 LTKILTK-ELEIPVILLTAKGQLSDKEQGFRSGSEDYLVKPFEPKELLFRV 111 >gi|320103510|ref|YP_004179101.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319750792|gb|ADV62552.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1215 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ D+RR L L AG+ V + ++G K F L+L D+ MP +DG+E Sbjct: 865 ILVVEDNPDLRRVLTAFLTAAGWRVETASDGEEGLAKATTTSFDLILMDLQMPRLDGVEA 924 Query: 65 ARR 67 RR Sbjct: 925 TRR 927 >gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 260 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A + + L++ D+ +P MDG+E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 152 >gi|291548373|emb|CBL21481.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Ruminococcus sp. SR1/5] Length = 538 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 V C+NG +A + V+ P ++LTDI+MP MDG+EL+R + PD+ ++ +GF Sbjct: 31 VGDCDNGKAAAEFVQNHPVDIVLTDILMPYMDGMELSRFLHDNYPDIVIVIFSGFGEFEY 90 Query: 89 NPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + ++ + KP +L N + ++ Sbjct: 91 AKKAIQYGVSEYMLKPVTAMELRNVIGKM 119 >gi|258592576|emb|CBE68885.1| Chemotaxis protein cheY [NC10 bacterium 'Dutch sediment'] Length = 125 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 6/125 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D + MR + AL G++V+ NG A + +++TD+ MP MD Sbjct: 1 MTKRILIVDDSNSMRGIIRSALTDGGHDVIEAANGRDALVALDRHSVDVIITDMNMPIMD 60 Query: 61 GI----ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GI E+ RR T + V+ +T A+ A + KPF+ + L + + Sbjct: 61 GITLVKEIRRRPT--NKSTPVLILTTECDAAMKQAGKAAGATGWIVKPFNPQQLRQVITK 118 Query: 117 LLTIK 121 +L ++ Sbjct: 119 VLPLQ 123 >gi|262382134|ref|ZP_06075272.1| rteB protein [Bacteroides sp. 2_1_33B] gi|262297311|gb|EEY85241.1| rteB protein [Bacteroides sp. 2_1_33B] Length = 441 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+ V S ++ + A ++ EE F L+++D+ +P+ DGI+L Sbjct: 6 ILIVEDDITFSLMLTTWLGKKGFVVRSSSSVSDAKRRLGEEAFDLVISDLRLPDSDGIDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P L ++ +T +A + + A ++KP + +L+ ++ L+ ++ Sbjct: 66 LKWLKNTHPSLPLIMMTSYAEIQTAVQAMKLGAADYIAKPLNPDELLGKIKELVYVE 122 >gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 228 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL ED+ M L + L + GY V G A ++ +LL+ D+ +P MD Sbjct: 1 MPRPILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R+ + PDL V+ +T V L KPF +L+ + LL Sbjct: 61 GVEVCRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALL 118 >gi|254521538|ref|ZP_05133593.1| acetoacetate metabolism regulatory protein AtoC [Stenotrophomonas sp. SKA14] gi|219719129|gb|EED37654.1| acetoacetate metabolism regulatory protein AtoC [Stenotrophomonas sp. SKA14] Length = 457 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + L+ +D+ D+R L+ LG+ G + + N A A + + P+ L +TD+ +P+ +G Sbjct: 4 TRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL + P V IT F ++ L ++ +SKP + L V L + Sbjct: 64 IELVSEIAQHYPRTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 231 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 16/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE- 63 I + EDD+D+ L K G++V S NG A++ +++E +++ D++MPE+DG+E Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 64 --LARRATELDPDLKVMF------ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L R EL+ +M I + L D ++KPF R+L+ V Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADD-------YVTKPFSFRELLARVK 116 Query: 116 RLL 118 LL Sbjct: 117 ALL 119 >gi|145594416|ref|YP_001158713.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303753|gb|ABP54335.1| response regulator receiver modulated diguanylate cyclase [Salinispora tropica CNB-440] Length = 326 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD+D+ RF+ L GYEV+ +G A + + L + D++MP +DG+EL Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGYEVIHAGDGQEALEVIARHRPDLAVVDLMMPRVDGLEL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR DP V+ + A + D +A L KPF +LV V+ L Sbjct: 71 TRR-LRADPMTAVLPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTL 126 >gi|85710707|ref|ZP_01041771.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1] gi|85687885|gb|EAQ27890.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1] Length = 609 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 10/124 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKV-----REEPFSLLLTDIVMP 57 +ILLAED D + + LI+ +GK G + +G +A D V R +P+SL+L D+ MP Sbjct: 467 RILLAEDFD-INQELIREMGKQLGLDFDLVEDGRAALDAVISANARGKPYSLVLMDLQMP 525 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 MDG+E R D + + I A A D A + A + ++KP L+ L + + Sbjct: 526 RMDGLEATRAIRAAGFDAETLPIIALTANAFEDDIEACREAGIQEHVAKPLELQRLRDAL 585 Query: 115 NRLL 118 R L Sbjct: 586 QRWL 589 >gi|325286068|ref|YP_004261858.1| Fis family two component sigma54 specific transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324321522|gb|ADY28987.1| two component, sigma54 specific, transcriptional regulator, Fis family [Cellulophaga lytica DSM 7489] Length = 440 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 54/116 (46%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD + L + L Y V + A + + LL+TDI MPE+DG+ Sbjct: 6 ENILIVDDDIHILELLQRHLQALNYHVYKAVSVKQALYVLHDSTIDLLITDIQMPEIDGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L + E P + + ITG+ +V L+KPF +L VNR L Sbjct: 66 QLLKYTAEHYPHIPKLVITGYPSVDDAMSVIKSGATDYLTKPFTKEELKQAVNRSL 121 >gi|311107428|ref|YP_003980281.1| response regulator 12 [Achromobacter xylosoxidans A8] gi|310762117|gb|ADP17566.1| response regulator 12 [Achromobacter xylosoxidans A8] Length = 129 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 + +L+ +D++ R L + L GY V N A +++ E P ++TDI MP M Sbjct: 10 RKAVLVVDDNETARWILAEILAGEGYAVCEAGNADEALERLGERPDIRAVITDIEMPGSM 69 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+E+A R P++ V+ +G + P K + KP+ +L+ E+ +L Sbjct: 70 DGLEMAARIRSQSPEIAVLLTSGR---HYPTAGDLPPATKFILKPWAADELIRELETVLC 126 Query: 120 IK 121 + Sbjct: 127 LS 128 >gi|269121372|ref|YP_003309549.1| response regulator receiver protein [Sebaldella termitidis ATCC 33386] gi|268615250|gb|ACZ09618.1| response regulator receiver protein [Sebaldella termitidis ATCC 33386] Length = 120 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K L+ +D +R + + L + G+EV NGA A + +E L+ DI MP++ Sbjct: 1 MAKKALVVDDTPYIRADIREILERNGFEVTEAENGAEAVELYKEGRPDLVTMDINMPKIH 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRL 117 G+ + T DP+ ++ + A++ AK LSKPF +L+ E+ RL Sbjct: 61 GLRATQMITNFDPNANIIICSTMVALSNYVKLGKEAGAKAFLSKPFSEGELLKEIKRL 118 >gi|254468618|ref|ZP_05082024.1| nitrogen regulation protein [beta proteobacterium KB13] gi|207087428|gb|EDZ64711.1| nitrogen regulation protein [beta proteobacterium KB13] Length = 465 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 59/113 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KI + +DD +R L KAL K Y V++ N A ++ + L+++DI MP G+ Sbjct: 6 KKIWILDDDKSIRWVLQKALEKNNYTVLAFGNTNEAINQFNHDMPDLIVSDIKMPGESGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + P++ V+ +T F+ + DS + + L KPF + + +N +N Sbjct: 66 QFLEKVKGKFPNIPVIIMTAFSDLDSAVDSYSHGAYEYLPKPFDIDNAINVIN 118 >gi|253698911|ref|YP_003020100.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251773761|gb|ACT16342.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1108 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59 ++ ILL EDD +R + + L + GY V+ +G A R L++ D++MP+ Sbjct: 988 DETILLVEDDAVIREMVGELLEEFGYRVIKAVDGEDAVRTFRGAAAEVQLVILDVIMPKR 1047 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E + + P +K +F++G+ A + +SKP + +L+ +V LL Sbjct: 1048 NGKEAYEEISRIRPGVKALFMSGYTADIITDSLIKGDPRHFVSKPISINELLGKVRDLL 1106 >gi|197118504|ref|YP_002138931.1| response receiver sensor diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197087864|gb|ACH39135.1| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 953 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +LL ED+ + R L + LG G + + +NG S + R+ +++TDI MP+M+GI Sbjct: 13 LLLVEDEIEARDMLGRMLGLNYQGVRIYTADNGMSGLEAFRQFRPEIVVTDINMPQMNGI 72 Query: 63 ELARRATELDPDLKVMFITGFAAVA 87 +AR ELDP+ ++ +T + + Sbjct: 73 AMAREIKELDPEATIVAVTAHSETS 97 >gi|108761253|ref|YP_635545.1| sigma-54 dependent DNA-binding response regulator Nla24 [Myxococcus xanthus DK 1622] gi|108465133|gb|ABF90318.1| sigma-54 dependent DNA-binding response regulator Nla24 [Myxococcus xanthus DK 1622] Length = 451 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +DD + FL ++L GYE V + A E F L++TD+ MP M G Sbjct: 5 RKRLLILDDDAGVVDFLCESLDARGYEAVGRTSPEEALALFERESFDLVITDVEMPRMRG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ P V+ IT F +V L + ++KPF++ LV + R Sbjct: 65 TEVLEALLTRKPGQLVVLITAFGSVELAVAAVKAGACDFVTKPFNIDALVLTLER 119 >gi|34498898|ref|NP_903113.1| chemotaxis protein cheY [Chromobacterium violaceum ATCC 12472] gi|34332885|gb|AAQ61104.2| chemotaxis protein cheY [Chromobacterium violaceum ATCC 12472] Length = 121 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL +D +R+ + L AGYEV +G + K + F L+LTD MP MD Sbjct: 1 MPKKILTVDDSASIRQMVSFTLKSAGYEVAEAVDGNAGLSKAQSMQFDLVLTDQNMPGMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R R ++ +T ++ + A + L KPF + L++ V RL+ Sbjct: 61 GLTLIRSLRKQPSYNSTPILMLTTESSDQMKALGRAAGASGWLVKPFDPQKLLDVVKRLV 120 >gi|78356308|ref|YP_387757.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218713|gb|ABB38062.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 654 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 10/125 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ +L+ +DDDD+ + K + GY+V S A + R +P F L+LTD +MP + Sbjct: 516 NESLLIVDDDDDLAYSVGKLFTRLGYKVTSVTRSKEALELFRRKPHAFDLVLTDQMMPNL 575 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN------AKVLSKPFHLRDLVNE 113 G+EL R + PDL V+ TGF S PK+ A KPF L E Sbjct: 576 TGVELTRELLSIRPDLPVIMYTGFEGTG--NLSRYPKDWRKVGVAAFFYKPFDTAALSAE 633 Query: 114 VNRLL 118 + L Sbjct: 634 IRTQL 638 >gi|332995524|gb|AEF05579.1| Signal transduction histidine kinase [Alteromonas sp. SN2] Length = 633 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+ L + G V +NG A KV EE F ++ DI MP MDG+E Sbjct: 516 VLLAEDNAINAVVAQALLEQLGCTVTHVDNGLKAAVKVEEETFDVIFMDIHMPVMDGVEA 575 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNRL 117 RR L D+ + I G A A +A K V++KP + L + +L Sbjct: 576 TRRIRSLPSDVSQIPIIGLTAEAFKERHDAFKQDGMNDVVTKPITIEALKGSLLKL 631 >gi|313905140|ref|ZP_07838509.1| response regulator receiver protein [Eubacterium cellulosolvens 6] gi|313470043|gb|EFR65376.1| response regulator receiver protein [Eubacterium cellulosolvens 6] Length = 121 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL +D MR + +L K GY V +G A K +E L++ DI MP MD Sbjct: 3 KILLVDDAAFMRMMVKNSLTKGGYADATFVEAQDGVDACQKYNDEKPDLVIMDITMPNMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++ ++ E DP+ KV+ T ++ ++ + KPF+ + V +L Sbjct: 63 GLQALKKIREGDPNAKVVMCTAMGQESMVVEAIKNGARDFVVKPFNAERICATVKDIL 120 >gi|304407998|ref|ZP_07389648.1| two component transcriptional regulator, AraC family [Paenibacillus curdlanolyticus YK9] gi|304343017|gb|EFM08861.1| two component transcriptional regulator, AraC family [Paenibacillus curdlanolyticus YK9] Length = 551 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMP 57 MN K+++ +D+ + R L K + G EVV + NG A++ ++ E LLL DI MP Sbjct: 1 MNGKVIIVDDEPHISRNLEKVIPWDMLGLEVVGTARNGVEAHELIQAESPDLLLCDIRMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVA 87 MDG+EL +R + D+ ++ ++G+ A Sbjct: 61 VMDGLELVKRIRAEELDVDIIMLSGYQDFA 90 >gi|302843336|ref|XP_002953210.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f. nagariensis] gi|300261597|gb|EFJ45809.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f. nagariensis] Length = 1844 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 5 ILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDG 61 +LL+ DDD + + ++K+L G GYEVV+ +G A V P L+L D +MPEMDG Sbjct: 773 LLLSVDDDHVNQSVVKSLLGSTGYEVVAVPSGPEALRYVATAPALPDLVLLDCMMPEMDG 832 Query: 62 IELARRATELDPDLKVMFI 80 E+ +R + P++ V I Sbjct: 833 YEVLQRLRAMTPNVHVPII 851 >gi|237715395|ref|ZP_04545876.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405239|ref|ZP_06081789.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229444704|gb|EEO50495.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356114|gb|EEZ05204.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1348 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++R ++ K G + ++ NG A +++ ++ L+++DI+MPEMDG+ Sbjct: 1093 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1151 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R+ + + +L + + A D+ N +A ++ KPF++ L V L+ Sbjct: 1152 LCRKIKQ-NVNLNHIPVILLTAKTREEDNLEGLNTGADAYIM-KPFNIEILQKTVENLIN 1209 Query: 120 IK 121 + Sbjct: 1210 TR 1211 >gi|261419432|ref|YP_003253114.1| response regulator receiver protein [Geobacillus sp. Y412MC61] gi|297530593|ref|YP_003671868.1| response regulator receiver protein [Geobacillus sp. C56-T3] gi|319766247|ref|YP_004131748.1| response regulator receiver protein [Geobacillus sp. Y412MC52] gi|261375889|gb|ACX78632.1| response regulator receiver protein [Geobacillus sp. Y412MC61] gi|297253845|gb|ADI27291.1| response regulator receiver protein [Geobacillus sp. C56-T3] gi|317111113|gb|ADU93605.1| response regulator receiver protein [Geobacillus sp. Y412MC52] Length = 119 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR + L K G+EVV+ +G A +K +E ++ DI MPEMDGI Sbjct: 3 RVLVVDDAAFMRMMIKDILTKNGHEVVAEAADGRQAIEKYKETRPDVVTMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++D + KV+ + A+ D+ + KPF ++ +N+ + Sbjct: 63 AALKEIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFVVKPFQADRVIEAINKTI 118 >gi|149912606|ref|ZP_01901140.1| sensor histidine kinase/response regulator hybrid [Roseobacter sp. AzwK-3b] gi|149813012|gb|EDM72838.1| sensor histidine kinase/response regulator hybrid [Roseobacter sp. AzwK-3b] Length = 130 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 17/127 (13%) Query: 2 NQKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ +L DDD++ R +++ L + Y VV +G A D V+EE F ++L D+ MP MD Sbjct: 3 DRRNILVVDDDEINRMVVRVLMERRNYRVVEAASGPEALDLVKEEAFDVVLMDLSMPGMD 62 Query: 61 GIELAR--RATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E R R+ L V+ +T + + L NA VL KPF + Sbjct: 63 GLETTRHIRSDAAGSQLPVVALTAHTSHKEQQMCLEAGMNA-----VLRKPFD----SEQ 113 Query: 114 VNRLLTI 120 V+RLL + Sbjct: 114 VDRLLGL 120 >gi|148380704|ref|YP_001255245.1| chemotaxis protein CheY [Clostridium botulinum A str. ATCC 3502] gi|153934194|ref|YP_001384988.1| chemotaxis protein CheY [Clostridium botulinum A str. ATCC 19397] gi|153934638|ref|YP_001388458.1| chemotaxis protein CheY [Clostridium botulinum A str. Hall] gi|153941301|ref|YP_001392024.1| chemotaxis protein CheY [Clostridium botulinum F str. Langeland] gi|168180848|ref|ZP_02615512.1| chemotaxis protein CheY [Clostridium botulinum NCTC 2916] gi|168183190|ref|ZP_02617854.1| chemotaxis protein CheY [Clostridium botulinum Bf] gi|170757287|ref|YP_001782352.1| chemotaxis protein CheY [Clostridium botulinum B1 str. Okra] gi|170760016|ref|YP_001788062.1| chemotaxis protein CheY [Clostridium botulinum A3 str. Loch Maree] gi|187778680|ref|ZP_02995153.1| hypothetical protein CLOSPO_02275 [Clostridium sporogenes ATCC 15579] gi|226950158|ref|YP_002805249.1| chemotaxis protein CheY [Clostridium botulinum A2 str. Kyoto] gi|237796181|ref|YP_002863733.1| chemotaxis protein CheY [Clostridium botulinum Ba4 str. 657] gi|148290188|emb|CAL84307.1| chemotaxis protein cheY homologue [Clostridium botulinum A str. ATCC 3502] gi|152930238|gb|ABS35738.1| chemotaxis protein CheY [Clostridium botulinum A str. ATCC 19397] gi|152930552|gb|ABS36051.1| chemotaxis protein CheY [Clostridium botulinum A str. Hall] gi|152937197|gb|ABS42695.1| chemotaxis protein CheY [Clostridium botulinum F str. Langeland] gi|169122499|gb|ACA46335.1| chemotaxis protein CheY [Clostridium botulinum B1 str. Okra] gi|169407005|gb|ACA55416.1| chemotaxis protein CheY [Clostridium botulinum A3 str. Loch Maree] gi|182668332|gb|EDT80311.1| chemotaxis protein CheY [Clostridium botulinum NCTC 2916] gi|182673668|gb|EDT85629.1| chemotaxis protein CheY [Clostridium botulinum Bf] gi|187772305|gb|EDU36107.1| hypothetical protein CLOSPO_02275 [Clostridium sporogenes ATCC 15579] gi|226844339|gb|ACO87005.1| chemotaxis protein CheY [Clostridium botulinum A2 str. Kyoto] gi|229263891|gb|ACQ54924.1| chemotaxis protein CheY [Clostridium botulinum Ba4 str. 657] gi|295320039|gb|ADG00417.1| chemotaxis protein CheY [Clostridium botulinum F str. 230613] gi|322807055|emb|CBZ04629.1| chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY [Clostridium botulinum H04402 065] Length = 119 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K G+EVV NNG A + ++E ++ DI MP+MDGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNGFEVVGEANNGLKAVELYKKEQPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + E D K++ + + D+ + KPF ++ + +++ Sbjct: 63 EAVKAIREFDAAAKIIMCSAMGQQTMVMDAIKAGAKDFIVKPFQADRVLEAIKKVI 118 >gi|126662822|ref|ZP_01733821.1| two-component system response regulator [Flavobacteria bacterium BAL38] gi|126626201|gb|EAZ96890.1| two-component system response regulator [Flavobacteria bacterium BAL38] Length = 229 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 48/82 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K +L +DD+ FL + ++V CNNG A+ +E F L + DI++P+MD Sbjct: 1 MSKKRILYVEDDETLAFLTADNLEQHFDVTHCNNGKEAFQLFCKETFDLCVLDIMLPDMD 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G E+A + + ++ ++F++ Sbjct: 61 GFEIATEIRKRNQEIPIIFLSA 82 >gi|115377678|ref|ZP_01464872.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115365340|gb|EAU64381.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 131 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+A+D++ +R L G EVV+ ++G A++ V+ F L++ D+ MP + G Sbjct: 6 GKCILIADDEEGIRDLFRFTLEPLGVEVVTVSDGWEAFEAVQLRGFDLIILDVHMPRLSG 65 Query: 62 IELARRATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ + EL P +V+ ++ A+ A + + L KP L +L++ + R L+ Sbjct: 66 PEVLVKIRELRPAQRVLVVSSSSDASHAFEQRVSEFGASACLYKPVELDELLSAIERALS 125 >gi|310818979|ref|YP_003951337.1| Sigma-54 dependent DNA-binding response regulator FrgC [Stigmatella aurantiaca DW4/3-1] gi|309392051|gb|ADO69510.1| Sigma-54 dependent DNA-binding response regulator FrgC [Stigmatella aurantiaca DW4/3-1] Length = 464 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD + + L L +AG V + +G A +R+ P ++++D+ MP M G+EL Sbjct: 9 VLLVEDDRAVAKVLGALLTQAGLTVHTAWSGEEALTLLRQMPIDVVVSDVRMPGMSGMEL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 T P++ V+ +T V + ++ A + KPF ++++ + + L Sbjct: 69 LTEVTRSCPEVPVVLMTAHGTVPMAVEAMRAGAADFILKPFDRQEILFTLRKTL 122 >gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] Length = 235 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ +R +M ++ + A+ L D L+KPF R+L+ Sbjct: 61 GMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADD-------YLTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAVL 118 >gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] Length = 221 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TD++MPEMDG + Sbjct: 3 RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L D+ V+ IT A ++KP + +++ V LL Sbjct: 63 LVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALL 117 >gi|260172852|ref|ZP_05759264.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1317 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDD++R+ LI+ + +E+ NG A+ + L+L+D++MP + GI L Sbjct: 1059 LLIVEDDDELRKLLIEIF-EPIFEIYEAKNGEDAFKIAQLNSPDLILSDVMMPGISGINL 1117 Query: 65 -ARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR + D + V+ +T ++V N ++KPF++R L+ + LL Sbjct: 1118 CARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLL 1173 >gi|257455860|ref|ZP_05621080.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus SK60] gi|257446745|gb|EEV21768.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus SK60] Length = 244 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ ++ ++ K L +AG+ V G Y + E FS+++ D+++P++ G E Sbjct: 2 KVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R V+F+T ++ L+KPF +L+ + LL Sbjct: 62 LIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLL 116 >gi|222530197|ref|YP_002574079.1| response regulator receiver protein [Caldicellulosiruptor bescii DSM 6725] gi|312621518|ref|YP_004023131.1| response regulator receiver protein [Caldicellulosiruptor kronotskyensis 2002] gi|222457044|gb|ACM61306.1| response regulator receiver protein [Caldicellulosiruptor bescii DSM 6725] gi|312201985|gb|ADQ45312.1| response regulator receiver protein [Caldicellulosiruptor kronotskyensis 2002] Length = 120 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++I++ +D + + L K + K G+EV C NG A +K E L+ D+ MP ++G Sbjct: 2 KRIMIVDDSPMIHKLLKKEIEKLGHEVCFCATNGQEAVEKYFELKPDLIFMDVTMPVLEG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKN-AKVLSKPFHLRDLVNEVNR 116 + E D KV+F++ L + N P N ++ KPF D+ N +N+ Sbjct: 62 DAAYNKIIEKDKSCKVIFLSAIGDKEL-LNVNDPSNIVAIIRKPFKSEDIQNAINK 116 >gi|206576089|ref|YP_002241055.1| transcriptional regulatory protein ZraR [Klebsiella pneumoniae 342] gi|206565147|gb|ACI06923.1| transcriptional regulatory protein ZraR [Klebsiella pneumoniae 342] Length = 443 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD L L GY+V +NG A ++++ + F L+L DI M EMDGI Sbjct: 7 QILVVDDDVSHCTILQALLRGWGYQVALAHNGLQALEQIQNQVFDLVLCDIRMAEMDGIA 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P + V+ +T F++V ++ L KP L Sbjct: 67 TLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDFDTL 113 >gi|253700259|ref|YP_003021448.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251775109|gb|ACT17690.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 457 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 53/110 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ MR FL L GY V + A + E+ + ++++D++MP + Sbjct: 1 MRARILVVDDELSMREFLSILLEGEGYLVDQAESAEDALRCMGEQRYEMVISDVLMPGLG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIEL R P+ V+ IT F ++ + KPF + ++ Sbjct: 61 GIELLSRIKSESPETAVLMITAFTTAEQAVEAMKLGAYDYIGKPFKVEEV 110 >gi|126726842|ref|ZP_01742681.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Rhodobacterales bacterium HTCC2150] gi|126703800|gb|EBA02894.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Rhodobacterales bacterium HTCC2150] Length = 455 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLMTLMRWVDEGKGDLVISDVIMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E E P + V+ I+ + +N + L KPF L DL+ R L Sbjct: 61 GLENLPLIQEKRPGMPVIVISAQNTIMTAIKANEAEAYDYLPKPFDLPDLMKRAARALDT 120 Query: 121 KN 122 K Sbjct: 121 KQ 122 >gi|99082727|ref|YP_614881.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. TM1040] gi|99039007|gb|ABF65619.1| Phosphoserine phosphatase rsbU [Ruegeria sp. TM1040] Length = 423 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D RR L+ +L K G++VV +G A D R +P L+L+D +MP M+GI Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADPPDLILSDWMMPGMNGI 78 Query: 63 ELAR 66 E R Sbjct: 79 EFCR 82 >gi|148652516|ref|YP_001279609.1| two component heavy metal response transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571600|gb|ABQ93659.1| two component heavy metal response transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 244 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ ++ ++ K L +AG+ V G Y + E FS+++ D+++P++ G E Sbjct: 2 KVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R V+F+T ++ L+KPF +L+ + LL Sbjct: 62 LIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLL 116 >gi|85859214|ref|YP_461416.1| response regulator [Syntrophus aciditrophicus SB] gi|85722305|gb|ABC77248.1| response regulator with GAF and HD domains [Syntrophus aciditrophicus SB] Length = 494 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++IL+ +D +R + +AL + G YEV NG A ++ + ++++D++MP M Sbjct: 15 QKRILIVDDYPQLRTVVKEALEREGNYEVNEAENGLEALKLLQNADYDMIISDVMMPGMG 74 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI+L + E+ + + IT + AV + + KPF + +L+ +VN L Sbjct: 75 GIDLLKSIKEVRSNAVTIMITAYPAVETTVSAIKKGAIDFIKKPFDIDELLFKVNLYLRK 134 Query: 121 KN 122 K Sbjct: 135 KQ 136 >gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 909 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 39/73 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ ED+D R L + L G V NNG +A + EPF L+L D+ MP MDG Sbjct: 647 NAHVLMVEDNDTNRLILEQILSTLGCTVRHANNGQAALAALEVEPFDLVLMDVQMPIMDG 706 Query: 62 IELARRATELDPD 74 + RR E + + Sbjct: 707 LTATRRIREAEKE 719 >gi|307721789|ref|YP_003892929.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979882|gb|ADN09917.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 427 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 61/113 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL ED+DD+R +AL + E+ + +NG + ++ ++++DI MP+M+G+E+ Sbjct: 10 ILYVEDEDDVREGYSRALKRISAELYTAHNGIVGLELFKKYHPDIIVSDINMPKMNGLEM 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R E++ ++KV+F T + A ++ + L KP + L + +L Sbjct: 70 VRAIKEINLEVKVIFTTAHSESAYLLEAIELQVEGYLLKPVQKKALTALIKKL 122 >gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] Length = 224 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL ED+ + RF+ L GYEV + +G E F +LL D+++P ++ Sbjct: 1 MPKKILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSIN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GIE+ RR + ++ +T AV D A +A + KPF + +L+ + + Sbjct: 61 GIEICRR-IRTQSQVPIILLTARDAVM---DRVAGLDAGADDYIVKPFAIEELLARIRTI 116 Query: 118 L 118 L Sbjct: 117 L 117 >gi|295109302|emb|CBL23255.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Ruminococcus obeum A2-162] Length = 539 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 V C NG A + V+E P ++LTDI+MP MDG+EL++ + PD+ ++ +GF Sbjct: 31 VGDCENGKQAAEFVKEHPVDIVLTDILMPYMDGMELSKFLHDNYPDVVIVIFSGFGEFEY 90 Query: 89 NPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + ++ L KP +L +N++ Sbjct: 91 AKKAIQYGVSEYLLKPVTAMELTGVINKM 119 >gi|259416210|ref|ZP_05740130.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259347649|gb|EEW59426.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 924 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 2/112 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 Q +LL +DD + + L + G EV C + A + + E+P +S L+TD MP + Sbjct: 799 QLVLLVDDDAQVAESIAAFLERLGAEVSICLHPDEALEAIEEDPGLWSFLVTDYNMPGQN 858 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 G +LAR A D DL ++ +T A +P+ + +L KP L L + Sbjct: 859 GGQLARAAKTADGDLPIVIVTALARKLSDPNLTEDVISALLGKPVDLNTLAH 910 >gi|269792930|ref|YP_003317834.1| response regulator receiver protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100565|gb|ACZ19552.1| response regulator receiver protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 120 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++L+ +D MR L L K G+EVV NG A E ++ DI MPEM Sbjct: 1 MGTRVLIVDDAAFMRMMLKDILTKNGFEVVGEAENGKMAVQMYSELKPDVVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + DP+ KV+ ++ A+ ++ A + KPF ++ +++ L+ Sbjct: 61 DGLAAVKEIKQQDPNAKVVMVSAMGQQAMVIEAIRAGAADFIVKPFQPDRVLEALSKALS 120 >gi|269791972|ref|YP_003316876.1| CheA signal transduction histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099607|gb|ACZ18594.1| CheA signal transduction histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 695 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED R L + GY+V + +G A++ + +P L++TD+ MP MDG Sbjct: 576 KRILVVEDSVTSRALLRNLMTSLGYQVTTAADGQEAWEVISRDPHHLVITDVEMPRMDGF 635 Query: 63 ELARR 67 EL RR Sbjct: 636 ELTRR 640 >gi|217077050|ref|YP_002334766.1| response regulator [Thermosipho africanus TCF52B] gi|217036903|gb|ACJ75425.1| response regulator [Thermosipho africanus TCF52B] Length = 122 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D + +R+ L KAG+EV +G +K++E L++ DI+MP +DG Sbjct: 2 KKILVIDDSEVLRKITSFNLKKAGFEVYEAVDGVDGLEKMKEIMPDLIILDIMMPRLDGF 61 Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D D+ V+ +T + + V++KPF L+ EV RL+ Sbjct: 62 GVLKEKGQDDSIKDIPVIILTAKGGSEDERLAKSLGAKMVMTKPFSPSQLIEEVKRLI 119 >gi|194365512|ref|YP_002028122.1| response regulator receiver protein [Stenotrophomonas maltophilia R551-3] gi|194348316|gb|ACF51439.1| response regulator receiver protein [Stenotrophomonas maltophilia R551-3] Length = 119 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDG 61 ++L+ ED D+R + AL G +V + + A ++ E F ++ +DI MP M G Sbjct: 7 RVLMVEDQTDLREMIGLALRDFGIDVATTADAHEAAALLKGEARFDVVFSDISMPNGMSG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 IEL+ P +++ +G+A L P P+ + L KP+ LR LV Sbjct: 67 IELSEHVARDQPQARMILSSGYARSQLPP---LPEQVEFLPKPYRLRQLVE 114 >gi|39995895|ref|NP_951846.1| response regulator [Geobacter sulfurreducens PCA] gi|39982659|gb|AAR34119.1| response regulator [Geobacter sulfurreducens PCA] gi|298504909|gb|ADI83632.1| response regulator, putative [Geobacter sulfurreducens KN400] Length = 125 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 4/124 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EP--FSLLLTDIVMPE 58 +L+ +D++ M R+L K + AG V + NG S ++ +P SLLL D+ +P+ Sbjct: 3 GGSVLICDDEEGMLRYLKKMIEAAGLRVETFGNGTSLLARIEGGDPGDASLLLQDMRLPD 62 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E+ R EL P L V+ +T +A + + + L KPF R+ V V R Sbjct: 63 ADGLEILHRVKELRPALPVVMMTAYACDEVVRAAFDGGASDFLPKPF-TREAVLGVIRTT 121 Query: 119 TIKN 122 T ++ Sbjct: 122 TAEH 125 >gi|56475527|ref|YP_157116.1| response regulator domain-containing protein [Aromatoleum aromaticum EbN1] gi|56311570|emb|CAI06215.1| Protein containing response regulator domain, but no DNA binding domain [Aromatoleum aromaticum EbN1] Length = 123 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 14/127 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+A+D+ ++ L + + GYEV N+G A ++R E L+L D++MP+ Sbjct: 1 MAKKILIADDEQNIVISLEFLMKREGYEVSIANDGEEAIARIRAELPDLVLLDVMMPKKS 60 Query: 61 GIELARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVN 112 G E+ + + DPDL +V+ +T A D+ K + ++KPF ++LV Sbjct: 61 GFEVCQE-IKADPDLQSVRVLMLT-----AKGRDTEVAKGLALGADAYMTKPFSTKELVE 114 Query: 113 EVNRLLT 119 V +L Sbjct: 115 CVRSMLA 121 >gi|317474610|ref|ZP_07933884.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316909291|gb|EFV30971.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1356 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED+D +R L K Y++++ NG ++ VR E ++++D+VMP+M G Sbjct: 1093 DAKMLIVEDNDSIREMLANIF-KPFYQILTATNGEEGWELVRNEMPCIVVSDVVMPKMSG 1151 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1152 TELCKLIKNDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTSLLISRCNNLV 1210 >gi|312959343|ref|ZP_07773860.1| Heavy metal sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] gi|311286060|gb|EFQ64624.1| Heavy metal sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] Length = 760 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GYEV +G ++ +R E F LL+TDI MP MDGI Sbjct: 637 KRVLVVDDSLTVRELQRKLLLNRGYEVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDGI 696 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 697 ELVTLLRRDTRLQ-SLPVMVVS 717 >gi|293605626|ref|ZP_06688006.1| nitrogen regulation protein NR(I) [Achromobacter piechaudii ATCC 43553] gi|292816006|gb|EFF75107.1| nitrogen regulation protein NR(I) [Achromobacter piechaudii ATCC 43553] Length = 498 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 57/116 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + + + +DD +R L KAL +AG S + A + + E L++DI MP +G+ Sbjct: 2 KPVWIVDDDQAIRWVLEKALARAGVPTRSFSQSADVLEALSRETPVALVSDIRMPGGNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R+ E P L V+ +T FA + + L+KPF + + V + R + Sbjct: 62 ELLRQLKERHPGLPVIVMTAFADLDSTVSAFQGGAFDYLAKPFDVNEAVALIQRAM 117 >gi|294646991|ref|ZP_06724608.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806380|ref|ZP_06765223.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292637662|gb|EFF56063.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294446395|gb|EFG15019.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1339 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++R ++ K G + ++ NG A +++ ++ L+++DI+MPEMDG+ Sbjct: 1084 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1142 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R+ + + +L + + A D+ N +A ++ KPF++ L V L+ Sbjct: 1143 LCRKIKQ-NVNLNHIPVILLTAKTREEDNLEGLNTGADAYIM-KPFNIEILQKTVENLIN 1200 Query: 120 IK 121 + Sbjct: 1201 TR 1202 >gi|293368584|ref|ZP_06615192.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292636381|gb|EFF54865.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1317 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDD++R+ LI+ + +E+ NG A+ + L+L+D++MP + GI L Sbjct: 1059 LLIVEDDDELRKLLIEIF-EPIFEIYEAKNGEDAFKIAQLNSPDLILSDVMMPGISGINL 1117 Query: 65 -ARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR + D + V+ +T ++V N ++KPF++R L+ + LL Sbjct: 1118 CARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLL 1173 >gi|108761825|ref|YP_633731.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465705|gb|ABF90890.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 222 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 56/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D +L L + GYEVV+ + + +R F L++ D++MP+M G E Sbjct: 29 RILVVDDEQDNCDYLKLVLTREGYEVVTTTDPTQTVEILRGSDFHLVILDMMMPQMSGTE 88 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + D D+ V+ T + V S + + + KP + V L K Sbjct: 89 VLEQIRKYDTDVAVIVATAYPTVDTAVASLKAQASDYVKKPMEPEQFITAVRNALQKKG 147 >gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis AF2122/97] gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T92] gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T17] gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis CPHL_A] gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis T46] gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG] gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] Length = 230 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +D Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 >gi|119357583|ref|YP_912227.1| response regulator receiver protein [Chlorobium phaeobacteroides DSM 266] gi|119354932|gb|ABL65803.1| response regulator receiver protein [Chlorobium phaeobacteroides DSM 266] Length = 120 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +DDD +R+F+ L + Y V +NG +A ++E ++++TD++MPE +GI Sbjct: 2 KILVIDDDDAVRKFISITLKRENYTVFEADNGKAALLVLQEHRDIAIVITDLIMPEKEGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLV 111 + P +K+M I+G V+ ++A L KPF ++L+ Sbjct: 62 ATIMEVKQQYPAVKIMAISGGGNVSSENYLVLADALGANATLRKPFSGQELL 113 >gi|310824445|ref|YP_003956803.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309397517|gb|ADO74976.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 130 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+A+D++ +R L G EVV+ ++G A++ V+ F L++ D+ MP + G Sbjct: 5 GKCILIADDEEGIRDLFRFTLEPLGVEVVTVSDGWEAFEAVQLRGFDLIILDVHMPRLSG 64 Query: 62 IELARRATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ + EL P +V+ ++ A+ A + + L KP L +L++ + R L+ Sbjct: 65 PEVLVKIRELRPAQRVLVVSSSSDASHAFEQRVSEFGASACLYKPVELDELLSAIERALS 124 >gi|311281441|ref|YP_003943672.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter cloacae SCF1] gi|308750636|gb|ADO50388.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter cloacae SCF1] Length = 440 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 26 GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAA 85 GY+V N+G A +VRE F ++L D+ M EMDGI+ + L+P + V+ +T F++ Sbjct: 28 GYQVAIANSGKEALRQVREHVFDVVLCDVRMAEMDGIDTLKEIKALNPAIPVLIMTAFSS 87 Query: 86 V 86 V Sbjct: 88 V 88 >gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] Length = 230 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD D+ A+ KAG+E + ++G +A + ++E L++ DI +PEMD Sbjct: 1 MPARILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ R ++ ++ ++F+T + L D L+KPF R+LV Sbjct: 61 GLEVCREIRKIS-EVPILFLTARDEEIDRILGLELGADD-------YLTKPFSPRELVAR 112 Query: 114 VNRLL 118 + +L Sbjct: 113 IKAIL 117 >gi|256838865|ref|ZP_05544375.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] gi|256739784|gb|EEU53108.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] Length = 1369 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +L ED++D+ R+L+ A + Y VV NG +K E ++++D++MP M+ Sbjct: 1104 LRQTLLFVEDNEDLCRYLMNAF-QTDYRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMN 1162 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE A + E + V+ +T A + L KPF L L ++ LL Sbjct: 1163 GIECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLL 1222 >gi|114762891|ref|ZP_01442323.1| nitrogen regulation protein NtrC [Pelagibaca bermudensis HTCC2601] gi|114544501|gb|EAU47508.1| nitrogen regulation protein NtrC [Roseovarius sp. HTCC2601] Length = 457 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P+L V+ I+ + + + L KPF L DL+ + L Sbjct: 61 GLEMLPKIHQDRPELPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTAKALDN 120 Query: 121 KN 122 +N Sbjct: 121 RN 122 >gi|86157980|ref|YP_464765.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774491|gb|ABC81328.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 467 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D+ D R L + + GY+V + ++G A + E ++LTD+VMP MD Sbjct: 1 MRYRVLIVDDETDSREALAELSQRWGYDVQTASDGTEALRRAIEGHPDVILTDLVMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L R PD V+ +TG + Sbjct: 61 GLWLLRALRAELPDCPVVLLTGRGTI 86 >gi|89901045|ref|YP_523516.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345782|gb|ABD69985.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1009 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 8/108 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+D R F + L G E++ NG A DKV++ +L D+ MP MDG++ Sbjct: 668 LLLVEDNDINREFATELLRGEGIEIIEAVNGQEALDKVQQHDLDAVLMDLQMPVMDGLQA 727 Query: 65 ARRATEL--DPD---LKVMFITGFAAVALNPDSNAPKNAKV---LSKP 104 RR L P+ + I A+A+ D+ + A + +SKP Sbjct: 728 TRRIRALANTPEGARFASLPIIAMTALAMPQDAQKSREAGMNDHISKP 775 >gi|75907784|ref|YP_322080.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701509|gb|ABA21185.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 369 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D D + L GYE+ ++G SA KV + P L+L D++MP MDG E Sbjct: 11 RILAVDDTKDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYE 70 Query: 64 LARRATELDPDLK---VMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR +P L ++ IT F ++V D A + KPF +L+ V LL Sbjct: 71 VTRRIRN-NPALSYVPILLITAFHESSVVEGLDVGAD---DFIRKPFDTDELLARVRSLL 126 Query: 119 TIKN 122 +K+ Sbjct: 127 RLKH 130 >gi|127512295|ref|YP_001093492.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella loihica PV-4] gi|126637590|gb|ABO23233.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella loihica PV-4] Length = 447 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD +R L+ L A YE V + +A ++ + F ++++D+ M + G+ Sbjct: 5 KILLVEDDAALREALVDTLLLAQYECVDVESAEAAIVALKGQEFDMVISDVQMEGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + + + ++ +T FA + + L+KPF L+N+V+R L K Sbjct: 65 LVNYLQQHNAQVPILLMTAFATIDSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLKPK 122 >gi|119356012|ref|YP_910656.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119353361|gb|ABL64232.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 826 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 39/64 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL +D R L L +G EV ++GA A + +R + F LL+TDI MP MDG+ Sbjct: 589 RKVLLVDDSALNRDLLAMYLRDSGIEVTVSDSGAEALNILRNQDFELLITDIHMPGMDGL 648 Query: 63 ELAR 66 EL R Sbjct: 649 ELTR 652 >gi|330504084|ref|YP_004380953.1| integral membrane sensor hybrid histidine protein kinase [Pseudomonas mendocina NK-01] gi|328918370|gb|AEB59201.1| integral membrane sensor hybrid histidine protein kinase [Pseudomonas mendocina NK-01] Length = 813 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D R +L L +EV + ++G + ++ EP+ LL++D+ MP MDG Sbjct: 688 RRILIVDDLPQNRDWLSDLLAGYDFEVQTASSGQQVLEYLQAEPYDLLISDMRMPGMDGW 747 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAP--KNAKVLSKPFHLRDLVNEVNRL 117 EL P+L V+ + A AL P P + L KP DL+ V+RL Sbjct: 748 ELLAALRPRWPELPVLLYS--AVPALRPAQMPPHLRFDATLLKPASSNDLLACVDRL 802 >gi|315921136|ref|ZP_07917376.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695011|gb|EFS31846.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1353 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDDD++R+ LI+ + +E+ NG A+ + L+L+D++MP + GI L Sbjct: 1095 LLIVEDDDELRKLLIEIF-EPIFEIYEAKNGEDAFKIAQLNSPDLILSDVMMPGISGINL 1153 Query: 65 -ARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR + D + V+ +T ++V N ++KPF++R L+ + LL Sbjct: 1154 CARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLL 1209 >gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv [Clostridium sticklandii DSM 519] gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV [Clostridium sticklandii] Length = 231 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 7/116 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ ED+ ++ RFL L GYEV ++G DK + F LL+ D+++P ++G Sbjct: 3 DKKILIIEDEYNIARFLQLELEHEGYEVGISHDGREGLDKACSDYFDLLILDVMLPSLNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +E+ RR + D+ V+ +T + L D A ++KPF + +L+ + Sbjct: 63 VEVLRRLRQ-KSDMPVVMLTAKDEMNDKILGLDIGAD---DYMTKPFAIEELLARI 114 >gi|282899741|ref|ZP_06307704.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195356|gb|EFA70290.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 368 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 9/123 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D D + L GY + S ++GA+A K + P L+L D++MPEMDG E Sbjct: 11 RILVVDDRRDNLILVQTLLESEGYAIDSVSDGATALQKTVQSPPDLILLDVMMPEMDGYE 70 Query: 64 LA---RRATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R T +D + ++ IT F ++V D+ A + KPF +L+ V LL Sbjct: 71 VTRTIRSYTNIDY-IPILLITAFDESSVVEGLDAGAD---DFIRKPFDTNELLARVRCLL 126 Query: 119 TIK 121 +K Sbjct: 127 RLK 129 >gi|258625362|ref|ZP_05720259.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258582353|gb|EEW07205.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 571 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD +M R +I+ LGK G +NG A D V++ + L+ D MPEMDG E Sbjct: 447 ILVADDIEMNRIIIQGMLGKLGITPDFSHNGVEALDAVQQTQYDLIFMDCRMPEMDGFEA 506 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ E + ++ +T + VLSKP+ L DL Sbjct: 507 SQHLREQGYNKPIIALTAGTTIHEKQHCIECGMNDVLSKPYRLEDL 552 >gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 241 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +D+ ++R L +L AG++VV+ ++G A + + E L++ D+++P+MDG Sbjct: 13 RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFT 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E V+F+T VA ++KPF L ++V + +L Sbjct: 73 VTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVL 127 >gi|218131775|ref|ZP_03460579.1| hypothetical protein BACEGG_03396 [Bacteroides eggerthii DSM 20697] gi|217986078|gb|EEC52417.1| hypothetical protein BACEGG_03396 [Bacteroides eggerthii DSM 20697] Length = 1356 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED+D +R L K Y++++ NG ++ VR E ++++D+VMP+M G Sbjct: 1093 DAKMLIVEDNDSIREMLANIF-KPFYQILTATNGEEGWELVRNEMPCIVVSDVVMPKMSG 1151 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1152 TELCKLIKNDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTSLLISRCNNLV 1210 >gi|209809134|ref|YP_002264672.1| putative response regulator [Aliivibrio salmonicida LFI1238] gi|208010696|emb|CAQ81083.1| putative response regulator [Aliivibrio salmonicida LFI1238] Length = 415 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + IL+ +DD F+ L + G+ ++S NG A + E P +L+D +MPEMDG Sbjct: 2 EYILVVDDDPVSLLFMSSLLKRCGFNIISAKNGLEAMSILAENPHIQFVLSDWIMPEMDG 61 Query: 62 IELARRATELDPDLKVMFI 80 IEL + E++ D + F+ Sbjct: 62 IELCTKLKEIEFDRYIFFV 80 >gi|160932807|ref|ZP_02080196.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753] gi|156867881|gb|EDO61253.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753] Length = 225 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 47/79 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ D+ + + K L AGY V +C +G +D + + L+ DI+MP+MDGI Sbjct: 2 RILIAEDERDLNQLIKKRLKDAGYSVDACFDGEEVFDYLLCAEYDALVLDIMMPKMDGIT 61 Query: 64 LARRATELDPDLKVMFITG 82 + ++ + L V+ +T Sbjct: 62 VLKKLRREENALPVLLLTA 80 >gi|159043630|ref|YP_001532424.1| two component [Dinoroseobacter shibae DFL 12] gi|157911390|gb|ABV92823.1| two component [Dinoroseobacter shibae DFL 12] Length = 441 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 53/103 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A + ++L+DI MP MDG+ Sbjct: 6 KIAIVDDEQDMRQSISQWLALSGYDTETYASAEEALKGIEAGYPGIVLSDIKMPGMDGMA 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 L +R +D L V+ ITG V + ++ L KPF+ Sbjct: 66 LLKRLMSMDSALPVIMITGHGDVPMAVEAMRLGAFDFLEKPFN 108 >gi|46581782|ref|YP_012590.1| transcriptional regulatory protein zraR [Desulfovibrio vulgaris str. Hildenborough] gi|46451205|gb|AAS97850.1| transcriptional regulatory protein zraR [Desulfovibrio vulgaris str. Hildenborough] gi|311232339|gb|ADP85193.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris RCH1] Length = 459 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R L L GY ++G +A +KVRE+ +L D+ M M GIE Sbjct: 6 VLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARMGGIEA 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E +P + V+ +T +++V ++ L+KP L + + R L Sbjct: 66 LRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERAL 119 >gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str. Twist] gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str. Twist] Length = 251 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q KIL+ +D+ ++R L +L AGY VV+ NGA A V E L++ D+++P+M Sbjct: 25 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +R E V+F++ + ++KPF L +++ V +L Sbjct: 85 SGFAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAIL 143 >gi|148264433|ref|YP_001231139.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397933|gb|ABQ26566.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 510 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q ++L+ +D+ D+ F + L + GY VV+ N A + E F++ + D+ +P+ Sbjct: 1 MSQIQVLIIDDEADVCTFFRRLLSRKGYVVVTATNEPEAMLALEENSFNVAMVDLKLPDT 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ L + P +V+ +TG++ + + + L KPF D +NE+ L+ Sbjct: 61 DGLTLLQMIKARQPACEVILMTGYSTIKTAVTAVQLGAYEYLEKPF---DDINEIETLI 116 >gi|332886155|gb|EGK06399.1| hypothetical protein HMPREF9456_00273 [Dysgonomonas mossii DSM 22836] Length = 514 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL A+D+ M R I L + GYEV N+G A D ++ E F ++ D MP + G+ Sbjct: 4 RRILWADDEIYMLRSHILFLEEKGYEVTPVNSGQDAVDSIKSESFDIVFLDENMPGVSGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + E++P++ V+ IT + + K A L KP VN LL+IK Sbjct: 64 DALSIIKEINPNIPVIMITKSEDEGIMTHAIGKKIADYLIKP------VNPNQILLSIK 116 >gi|323700367|ref|ZP_08112279.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460299|gb|EGB16164.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 715 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDG 61 +IL +D+ + + L G+EVV+ + A + K R F L++TD MP M G Sbjct: 596 RILFVDDEKPLTDIGREMLESCGFEVVTRTSSIEALEAFKFRARDFDLIITDQSMPNMTG 655 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E AR ++ PD+ ++ TGF+ + KP DL+ ++RLL Sbjct: 656 MEFAREVLKIRPDIPIILCTGFSDAVSYERLRDVGIGDFIMKPILKHDLMASISRLL 712 >gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter [Enterococcus faecium D344SRF] gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter [Enterococcus faecium D344SRF] gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] Length = 222 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TD++MPEMDG + Sbjct: 3 RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L D+ V+ IT A ++KP + +++ V LL Sbjct: 63 LVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALL 117 >gi|159897254|ref|YP_001543501.1| CheA signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890293|gb|ABX03373.1| CheA signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 762 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED R L L AGY V + NG A DK+ + LL++D+ MP + G E Sbjct: 643 KLLVAEDSFTTRELLRSMLQSAGYVVETAINGQDALDKLNHNSYDLLVSDVEMPLLTGFE 702 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN----APKNAKVLSKPFHLRDLVNEVNRLL 118 L RR D L+ + I ++A + D A A ++ F +L+ +++LL Sbjct: 703 LTRRVRAHD-RLRQLPIIIITSLARDSDRREGLLAGAQAYIVKSQFDQSNLLETIHQLL 760 >gi|121606239|ref|YP_983568.1| CheA signal transduction histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120595208|gb|ABM38647.1| CheA signal transduction histidine kinases [Polaromonas naphthalenivorans CJ2] Length = 1970 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +RR + L + GY V +G A ++++EE +++L+DI MP MDG +L Sbjct: 1847 ILVVDDSITVRRVTQRLLMRDGYRVAMAADGLQALERLQEEIPAVVLSDIEMPRMDGFDL 1906 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 AR RA E L ++ IT A N + L KP+ +L+ + + +++ Sbjct: 1907 ARNIRADERMKGLPIIMITSRIANKHNEHAVELGVNHYLGKPYSEDELLRLIRQYCSVQ 1965 >gi|114566136|ref|YP_753290.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337071|gb|ABI67919.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 268 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+A+D+ + L + +E+V CNNG + + + P +L+ D++MP MDG Sbjct: 9 KILIADDNREFCGILRDYFNNDSDFEIVGICNNGTEVLEIIEKTPIEVLILDLIMPYMDG 68 Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I + R EL +P +++ +T F + + + KPF+L+ L + V +L+ Sbjct: 69 IGVLERINELNIEPRPRIIILTAFGQENITQKAVQLGADYYILKPFNLQVLGDRVKQLV 127 >gi|327462252|gb|EGF08579.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327489608|gb|EGF21400.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] Length = 240 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 + NG A+ K +E P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 27 IAQAENGREAWQKFQENPADILLTDINMPQMNGLELAKLVRDQVPTCHIVFLTGY 81 >gi|320354372|ref|YP_004195711.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122874|gb|ADW18420.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1596 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +LL +D+ + ++L GY V + + +A + P + LL+TD MPEM Sbjct: 1471 EHVLLVDDEAFFLEVIQESLQLLGYHVTASLSSMAALRMFADAPRDYDLLITDQTMPEMT 1530 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R ++D +L ++ TG++ + + + L KP + DL V +L Sbjct: 1531 GVQLVREIRQIDKNLPIILCTGYSEIVSEQSATYYGINQFLMKPVNTSDLAQAVAAVL 1588 >gi|294674299|ref|YP_003574915.1| response regulator [Prevotella ruminicola 23] gi|294471960|gb|ADE81349.1| response regulator [Prevotella ruminicola 23] Length = 118 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 7/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+AED+D L+ L K +E NG A + V + L+L DI MP MDG+ Sbjct: 2 KKILVAEDNDS-NYVLMTYLLKKDFEFERAKNGQIAVEMVDANAYDLVLMDIKMPVMDGL 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R+ E P+L V+ +T A A + D A + A LSKP + + + + +LL Sbjct: 61 QATRQIKEKHPELPVVALT---ANAFDSDRTAAEQAGCCGFLSKPVNRDECMALLKKLL 116 >gi|294495497|ref|YP_003541990.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] gi|292666496|gb|ADE36345.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] Length = 170 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +D+ D +AL GY V+ NG + + + E+ L+L D++MP+MDG Sbjct: 48 QTILIIDDEPDAIIAAKRALQSEGYNVIEAYNGKTGLEAIEEKTPDLILLDVMMPDMDGF 107 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + + EL + ++ +T V + ++KPF+LR+L + +L Sbjct: 108 EICKQLKKDELYNHIPIIMLTAKGEVDDRIEGIETGADDYITKPFNLRELKARIRMVL 165 >gi|291286126|ref|YP_003502942.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] gi|290883286|gb|ADD66986.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] Length = 134 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDIVMP 57 + ILL +D+D R + AL K GY+V+ +G + +E ++L++ DI+MP Sbjct: 4 KNILLIDDEDQFRNGVKIALKKQGYKVIEAADGYEGMRHIIRSATSDEHYNLIVLDIMMP 63 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ G ++ + D V+ ITGF + + +L KPF ++++N + Sbjct: 64 KVSGADILEFMVHKNIDTPVLVITGFINYDIKFFCSRLSKVDILQKPFLSSVFISKINEM 123 Query: 118 L 118 L Sbjct: 124 L 124 >gi|225872700|ref|YP_002754157.1| response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794094|gb|ACO34184.1| response regulator [Acidobacterium capsulatum ATCC 51196] Length = 370 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 +IL+ +D+ +R + L K+ Y V NG A + + ++ P+ ++L+DI+M MDGI Sbjct: 5 RILVVDDEPYIRAVIATMLEKSNYLPVLAANGQEALEHLEQDAPYDVVLSDIMMNGMDGI 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E+ PD ++ +T V++ + L KPF L+ V R L Sbjct: 65 GLLEKLREVHPDTPMIMVTAMHDVSIAISAMRKGAYDYLLKPFAKEQLLATVGRAL 120 >gi|218887834|ref|YP_002437155.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758788|gb|ACL09687.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 542 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL EDD + L +AL + GY V + +R F L+L+D+++P M Sbjct: 1 MSGHILLIEDDTAFQSMLREALEERGYRVTTAGRAEDGIALLRGGGFDLVLSDVMLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E P ++ +T ++ L ++ V SKPF L+++ Sbjct: 61 GVEAIPHLRSAAPGTDIIVMTAYSTRELALEAVKLGAYDVFSKPFSLKEM 110 >gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] Length = 231 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L ++L GY +V +G A KV+ E +++ D++MP++DG+E Sbjct: 2 KILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R D ++ +T +V+ L+KPF L +L+ L+ Sbjct: 62 VCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLV 116 >gi|146307260|ref|YP_001187725.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina ymp] gi|330503403|ref|YP_004380272.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina NK-01] gi|145575461|gb|ABP84993.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] gi|328917689|gb|AEB58520.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina NK-01] Length = 225 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 54/119 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A E + LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKTGTYLQQGLTEAGFNVDRVMTGTDALQHALSEAYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R D+ V+F+T V L KPF +L+ V LL N Sbjct: 62 VLRMLRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120 >gi|222054285|ref|YP_002536647.1| response regulator receiver modulated serine phosphatase [Geobacter sp. FRC-32] gi|221563574|gb|ACM19546.1| response regulator receiver modulated serine phosphatase [Geobacter sp. FRC-32] Length = 383 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62 +ILL +D + L + LG++ Y +S NG +A +P L+L DI MP+MDG Sbjct: 5 RILLVDDTPENLELLAEILGES-YATISAGNGEAALVAASTQPLPDLILLDINMPDMDGY 63 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E+ RR E DP L+ V+F++G A + ++KPF ++ Sbjct: 64 EVCRRLKE-DPLLREIPVIFLSGLDATQDKVKAFKAGGVDYITKPFQFDEM 113 >gi|23015602|ref|ZP_00055373.1| COG3437: Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Magnetospirillum magnetotacticum MS-1] Length = 388 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 +KILL +D+ ++ + + LG++ + + + G A + E PF+++++D+ MP MDG Sbjct: 7 EKILLVDDEANLLAGMRRLLGQS-FNITTAEGGIEALGLAQNEGPFAVVVSDMRMPGMDG 65 Query: 62 IELARRATELDPDLKVMFITGFA 84 IEL RR E PD + +TG A Sbjct: 66 IELMRRFQEASPDTTRIMLTGNA 88 >gi|330897319|gb|EGH28738.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 667 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 544 ETVLIVDDEPSVRMLVAEVISGLGYNCLEAADAQSGLQILQSDTRIDLLISDIGLPGGMN 603 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 604 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 661 >gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 219 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KILLAEDD +RR L K GY V+ +G A + L++ DI+MP++D Sbjct: 1 MDKKILLAEDDWKLRRIASDFLKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ R ++ ++ +T K + ++KP L+ L+ +V LL Sbjct: 61 GWDVCREIRSERKNVPIIMLTAKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALLRR 120 Query: 121 KN 122 N Sbjct: 121 NN 122 >gi|298248414|ref|ZP_06972219.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] gi|297551073|gb|EFH84939.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] Length = 131 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 11/120 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD + L + GY+ + NG A D RE +L+LTD++MP M GI + Sbjct: 11 VLIVDDDIPITEILTLVVESLGYQPLVAFNGQQALDLAREHWPALVLTDVMMPIMGGIGV 70 Query: 65 AR------RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A + P V+ A + P+ + P +A ++SKPFH+ L ++R L Sbjct: 71 VQGLREEASARGIAPPHMVL----LTAANIWPELSLPVDA-LISKPFHIYQLEQLIHRFL 125 >gi|294500657|ref|YP_003564357.1| two-component response regulator CssR [Bacillus megaterium QM B1551] gi|294350594|gb|ADE70923.1| two-component response regulator CssR [Bacillus megaterium QM B1551] Length = 223 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ + L ED+ ++ L L K ++V S NG A + + P L + DI++P++D Sbjct: 1 MSFTLYLVEDEQNLNEVLTLYLQKESWDVRSFFNGTDAKEMIATPP-HLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G +L R + P + V+FI+ A + L S+ LSKPF R+LV N Sbjct: 60 GYQLIREIKQQTPHVPVIFISARDADIDRVLGLEMGSD-----DYLSKPFLPRELVIRAN 114 Query: 116 RLL 118 +LL Sbjct: 115 KLL 117 >gi|302876960|ref|YP_003845593.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687651|ref|ZP_07630097.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579817|gb|ADL53829.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY-DKVREEPFSLLLTDIVMPEMDGI 62 K+++ ED++ +R L +LGK G+EV S N S D +RE+P S+++ DI +P DG Sbjct: 3 KVMIVEDEEKIRNILRSSLGKWGFEVYSVENFNSTLEDFIREKP-SIIVIDINLPVCDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRLL 118 + E+ + V+F+ ++ N D N L+KPF + L+ ++N LL Sbjct: 62 YWCNKIREISK-VPVIFL---SSRTTNMDVVMAINMGGDDYLTKPFSIEVLIAKINALL 116 >gi|237720524|ref|ZP_04551005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|293371540|ref|ZP_06617958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298480439|ref|ZP_06998636.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|299146986|ref|ZP_07040053.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|229450275|gb|EEO56066.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|292633488|gb|EFF52053.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298273260|gb|EFI14824.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298514871|gb|EFI38753.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1352 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L+ + + Y+V + ++G A + ++++ S++L+D+VMP M G Sbjct: 1090 DAKMLIVEDNESIKQMLV-GIFETFYQVSTASDGVEALEMIQKDMPSIILSDVVMPRMSG 1148 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1149 TELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1207 >gi|237716769|ref|ZP_04547250.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229442752|gb|EEO48543.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1344 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L+ + + Y+V + ++G A + ++++ S++L+D+VMP M G Sbjct: 1082 DAKMLIVEDNESIKQMLV-GIFETFYQVSTASDGVEALEMIQKDMPSIILSDVVMPRMSG 1140 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1141 TELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1199 >gi|254519442|ref|ZP_05131498.1| chemotaxis protein CheY [Clostridium sp. 7_2_43FAA] gi|226913191|gb|EEH98392.1| chemotaxis protein CheY [Clostridium sp. 7_2_43FAA] Length = 119 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ +D MR + L K G+EVV +CN G A + ++E ++ DI MP+MDG Sbjct: 3 KVLIVDDAAFMRMMIKDILQKNGFEVVGEACN-GIEAVNLYKKENPDVVTMDITMPDMDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE + DP+ K++ + ++ D+ + KPF ++ + +++ Sbjct: 62 IEAVKEIRSFDPEAKIIMCSAMGQQSMVMDAIKSGAKDFIVKPFQADRVLEAIRKVV 118 >gi|254417706|ref|ZP_05031430.1| Sigma-54 interaction domain family [Brevundimonas sp. BAL3] gi|196183883|gb|EDX78859.1| Sigma-54 interaction domain family [Brevundimonas sp. BAL3] Length = 444 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q + L EDD D R+ L++ L G EV + A + + +++TD+ MP MD Sbjct: 5 LPQTVALIEDDADFRQALVERLTLEGLEVRAFTAAEPALKALDADFPGVVVTDLRMPGMD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L R LD L V+ ITG +A + ++KPF L + +NR L Sbjct: 65 GRQLLTRLQALDTSLPVIMITGHGDIADAVAAMHDGAYDFVAKPFPFERLQDSLNRALEK 124 Query: 121 KN 122 ++ Sbjct: 125 RS 126 >gi|160884022|ref|ZP_02065025.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483] gi|156110752|gb|EDO12497.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483] Length = 1352 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L+ + + Y+V + ++G A + ++++ S++L+D+VMP M G Sbjct: 1090 DAKMLIVEDNESIKQMLV-GIFETFYQVSTASDGVEALEMIQKDMPSIILSDVVMPRMSG 1148 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1149 TELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1207 >gi|150398444|ref|YP_001328911.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029959|gb|ABR62076.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 240 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I L +DD ++ + AL GY+V + +GASA + + P L + DI MP MDG+ Sbjct: 2 QTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLVARPPHLAIFDIKMPRMDGM 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 62 ELLRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVK 113 Query: 116 RLL 118 +L Sbjct: 114 AIL 116 >gi|332829883|gb|EGK02523.1| hypothetical protein HMPREF9455_01391 [Dysgonomonas gadei ATCC BAA-286] Length = 1409 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR+++ L Y+V NG A ++ +++D++MP MDG+EL Sbjct: 1160 ILVVEDNMDMRKYICSILSDY-YKVAEAENGEEALKVLKATAIDFIISDLMMPVMDGLEL 1218 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLLTIK 121 +++ + F+ A ++ + K + L+KPF L+ +N +L I+ Sbjct: 1219 SQKVKSDMSTSHIPFLMLTAKTSIETQIGSYKMGADEFLTKPFDEELLLTRINNILEIR 1277 >gi|323527934|ref|YP_004230086.1| response regulator receiver protein [Burkholderia sp. CCGE1001] gi|323384936|gb|ADX57026.1| response regulator receiver protein [Burkholderia sp. CCGE1001] Length = 467 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ + L + L YEV+S N+GA A + ++++D+ MP MDG E Sbjct: 35 LLLVDDEPGVISSLKRLLRPMKYEVLSANSGAEALALLESASVDVIISDMRMPNMDGAEF 94 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ + PD + +TG++ V A+ N L KP+ +DL+ + R L Sbjct: 95 LSRSRTVTPDAIRILLTGYSEVDAVVRAVNEGHVYHYLHKPWDDQDLLLTIQRAL 149 >gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] Length = 1324 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L + G V+ NNG A ++ E+ F L+L D+ MP MDGI Sbjct: 992 QTLLLVEDNEVNQEVALGLLQETGLSVIVANNGQEALQRLAEKSFDLVLMDMQMPVMDGI 1051 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A + D K + I A A+ D A + LSKP + + + + LT Sbjct: 1052 T-ATKKIRADERWKTLPIVAMTANAMATDIEHCTQAGMNDHLSKPIDVDKFYHVLKQFLT 1110 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 IEL R L K +T + N+ ++ KP + +L++ + Sbjct: 911 IELLTRVKSLGLREQTKCFLVTAYGRDIHLDSENSKLVDSLIVKPVNPSNLLDAI 965 >gi|260598679|ref|YP_003211250.1| transcriptional regulatory protein TctD [Cronobacter turicensis z3032] gi|260217856|emb|CBA32382.1| Transcriptional regulatory protein tctD [Cronobacter turicensis z3032] Length = 226 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL G+ V +G +A ++ E +++ + DI MP M G+E Sbjct: 2 RLLLAEDNRELAHWLEKALTNTGFAVDCVGDGLAAEHLLQNERYAVAVLDIEMPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R + V+ +T AVA L KPF L +L Sbjct: 62 VLSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSEL 108 >gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] Length = 223 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + R + L K Y V NG A D + E+ + ++ DI+MP MDGI Sbjct: 2 RILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLEEDIYDAVIMDIMMPVMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + ++ V+ +T + + L+KPF R+L+ + R+LT Sbjct: 62 ALKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARI-RVLT 116 >gi|218887083|ref|YP_002436404.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758037|gb|ACL08936.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 486 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 55/108 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R+ + L G++V + + G VREE L++ D+ MP MDG+ Sbjct: 3 KILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGLT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 R E+D L V+ +T ++ ++ + KPF + D++ Sbjct: 63 ALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDIL 110 >gi|126653735|ref|ZP_01725653.1| two-component response regulator involved in modulation of flagellar [Bacillus sp. B14905] gi|126589699|gb|EAZ83835.1| two-component response regulator involved in modulation of flagellar [Bacillus sp. B14905] Length = 120 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++IL+ +D MR + L K G+EVV +G A +K E L+ DI MPEM Sbjct: 1 MSKRILIVDDAAFMRMMIKDILSKNGFEVVGEAADGLQAVEKYNELKPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + DP V+ + A+ D+ + KPF ++ + + L Sbjct: 61 DGIAALKAIKGSDPSATVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIQKAL 119 >gi|157164314|ref|YP_001467795.1| response regulator receiver domain-containing protein [Campylobacter concisus 13826] gi|112800235|gb|EAT97579.1| two component transcriptional regulator, winged helix family [Campylobacter concisus 13826] Length = 229 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD+ R +I L +VV +G +K +++ F ++++DI MP ++G E+ Sbjct: 13 ILVAEDDEMARELIITGLKPYCDQVVGAKDGQDGLEKFKKQGFDIVMSDIHMPVLNGFEM 72 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDL 110 +L P K + T + + D N K+ + L KP ++DL Sbjct: 73 MNEIKKLKPHQKFIVFTSY-----DSDENLIKSYEQGATLFLKKPIDIKDL 118 >gi|27367508|ref|NP_763035.1| putative two-component response regulator [Vibrio vulnificus CMCP6] gi|27359080|gb|AAO08025.1| Putative two-component response regulator [Vibrio vulnificus CMCP6] Length = 409 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 55/114 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +I +D+ +R + +AL G EV+S N A + + +++TDI MP M+ Sbjct: 1 MNSQIYFIDDEPHIRDSVSQALMIEGVEVISFPNAVEALKHIDTQQAGVVVTDIHMPVMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+ L + +P +V+ +TG+ V ++ L KPF L+ + Sbjct: 61 GLALLKELRSRNPHFQVIVLTGYGDVKTAVEAMKGGAYDFLEKPFSTDSLLKAI 114 >gi|29349209|ref|NP_812712.1| rteB, two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298386904|ref|ZP_06996459.1| transcriptional regulatory protein ZraR [Bacteroides sp. 1_1_14] gi|29341117|gb|AAO78906.1| rteB, two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298260578|gb|EFI03447.1| transcriptional regulatory protein ZraR [Bacteroides sp. 1_1_14] Length = 457 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ EDD L L K G+EV S +N A A + + L+L+D+ +P+ D Sbjct: 1 MMKSILIIEDDITFGMMLKTWLSKKGFEVSSVSNIARAQKHIEGQGADLILSDLRLPDHD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI+L + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 GIDLLKWMNEKGIDIPLIIMTGYADIQSAVQAMKLGARDYVAKPVNPEELLKKMSEALQA 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|330889106|gb|EGH21767.1| response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 394 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|315920858|ref|ZP_07917098.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313694733|gb|EFS31568.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1352 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L+ + + Y+V + ++G A + ++++ S++L+D+VMP M G Sbjct: 1090 DAKMLIVEDNESIKQMLV-GIFETFYQVSTASDGVEALEMIQKDMPSIILSDVVMPRMSG 1148 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1149 TELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1207 >gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 224 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 IL+ EDD + R + L AG+E V NG A D P L+L DI++P+ +G E Sbjct: 4 ILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVFNNTPDIGLVLLDIMLPQFNGYE 63 Query: 64 LARRATELDPDLKVMFITG 82 + + E P+L V+F+T Sbjct: 64 VLKYIRERSPELPVIFLTA 82 >gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +DD D+R L+ K GY V NG ++ + FSL+L D++MP+MD Sbjct: 1 MKENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMD 60 Query: 61 GIELARRATE 70 G + + E Sbjct: 61 GYTMLCKLRE 70 >gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 885 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ + + L K G+EV NG A ++V + F +L DI MP MDG E Sbjct: 631 ILLAEDNEVNQNIAKRRLKKLGHEVTVAVNGHEALEQVAQHDFDCILMDIQMPGMDGYEA 690 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDL 110 + R E+ FI A A+ D+ A + +SKPF + L Sbjct: 691 TQEIRNLEIQDGRSRHFIVAMTAHAMEGDAERCFANDMDEYISKPFRVERL 741 >gi|293400684|ref|ZP_06644829.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305710|gb|EFE46954.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 226 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 6/115 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED++++R+ + L KAG+ +V +G A D ++PF +L+ D ++P + GIE Sbjct: 3 KVLLIEDEENIRKIISYDLRKAGHTIVESGDGQEALDIALKQPFDVLIIDWMLPHVSGIE 62 Query: 64 LARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + ++ D ++ +T + D ++KPF R+L+ VN Sbjct: 63 IVQKLRTQHVDSVMIMLTARDDETDILYAFDQGVD---DYVTKPFSPRELLARVN 114 >gi|289432805|ref|YP_003462678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946525|gb|ADC74222.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 1262 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R + L + GY V C+ A D + + ++L DI MP + G+EL Sbjct: 1143 VLVIDDEAAIRALIRIVLTQDGYRVDECDVPQKAMDMISNNNYDVILLDIRMPGVSGLEL 1202 Query: 65 ARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 T P + +V+FITG + A + K ++KPF++ L N +N +L+ N Sbjct: 1203 YSEITAEWPQMAKRVIFITGDTSDASISNLMVAKGIPCINKPFNIATLKNTLNSILSRAN 1262 >gi|262405544|ref|ZP_06082094.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294644578|ref|ZP_06722332.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294809610|ref|ZP_06768303.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262356419|gb|EEZ05509.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292640131|gb|EFF58395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443222|gb|EFG11996.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1352 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L+ + + Y+V + ++G A + ++++ S++L+D+VMP M G Sbjct: 1090 DAKMLIVEDNESIKQMLV-GIFETFYQVSTASDGVEALEMIQKDMPSIILSDVVMPRMSG 1148 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1149 TELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1207 >gi|229528793|ref|ZP_04418183.1| chemotaxis protein CheV [Vibrio cholerae 12129(1)] gi|229332567|gb|EEN98053.1| chemotaxis protein CheV [Vibrio cholerae 12129(1)] Length = 308 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EVV+ +G AY+K+ E SL+++DI Sbjct: 182 RRILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLNEGPISNQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHNELK-DLYVILHSSLSGV 275 >gi|298530440|ref|ZP_07017842.1| anti-sigma-factor antagonist [Desulfonatronospira thiodismutans ASO3-1] gi|298509814|gb|EFI33718.1| anti-sigma-factor antagonist [Desulfonatronospira thiodismutans ASO3-1] Length = 242 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 3 QKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 QK+L+ +D+ M + +KA G Y V + +G + +E L+++DI MP M Sbjct: 2 QKVLVIDDEKPTLSMFQLFLKAYG---YSVYTAESGEKGLEIFEQEKPPLVISDIKMPGM 58 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DGI++ R E+ P +V+ ITG L + L KP L N + R Sbjct: 59 DGIQVLGRIKEMSPHTEVIIITGHGDADLTIRAMELNATDFLHKPIEKNALQNALKR 115 >gi|254432194|ref|ZP_05045897.1| two-component response regulator [Cyanobium sp. PCC 7001] gi|197626647|gb|EDY39206.1| two-component response regulator [Cyanobium sp. PCC 7001] Length = 235 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 50/106 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD ++RRFL L GY + G A +VR + LLL D +P+ G+E Sbjct: 5 RLLIVDDDPELRRFLRTELELEGYSCEEASTGQQALQRVRAGGWELLLLDWSLPDFSGVE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 + RR +V+ +T V + L+KPF + + Sbjct: 65 ICRRLRSTGDTTQVLMVTARDDVQERVAALDAGADDYLTKPFSIEE 110 >gi|119386834|ref|YP_917889.1| two component, sigma54 specific, Fis family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377429|gb|ABL72193.1| two component, sigma54 specific, transcriptional regulator, Fis family [Paracoccus denitrificans PD1222] Length = 485 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG V + + + V E L++TD++MP+ + Sbjct: 1 MDGTVLIADDDRTIRTVLTQALTRAGCRVHATGSLSQLLRWVEEGRGDLVVTDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI++ + PDL V+ I+ + + L KPF L DL+ + L+ Sbjct: 61 GIDMIPAIRKARPDLPVIVISAQNTIVTAIRATEAAAFDYLPKPFDLPDLMARAGQALS 119 >gi|320329169|gb|EFW85166.1| response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330881541|gb|EGH15690.1| response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 394 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|302342067|ref|YP_003806596.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638680|gb|ADK84002.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1094 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 2/104 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +L +D+ + + L + GY V + + A +P F LL+TD MPE+ Sbjct: 970 EAVLFVDDERPLVDVGKRMLERLGYRVTATQSADEALRLFSADPAAFDLLITDYTMPEIT 1029 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 G ELA+RA L PDL V+ TG++ D+ + L KP Sbjct: 1030 GAELAQRAMALRPDLPVILCTGYSGQISEADALNMGIRRYLLKP 1073 >gi|262382643|ref|ZP_06075780.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262295521|gb|EEY83452.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 1369 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +L ED++D+ R+L+ A + Y VV NG +K E ++++D++MP M+ Sbjct: 1104 LRQTLLFVEDNEDLCRYLMNAF-QTDYRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMN 1162 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE A + E + V+ +T A + L KPF L L ++ LL Sbjct: 1163 GIECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLL 1222 >gi|253571370|ref|ZP_04848777.1| rteB [Bacteroides sp. 1_1_6] gi|251839323|gb|EES67407.1| rteB [Bacteroides sp. 1_1_6] Length = 457 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ EDD L L K G+EV S +N A A + + L+L+D+ +P+ D Sbjct: 1 MMKSILIIEDDITFGMMLKTWLSKKGFEVSSVSNIARAQKHIEGQGADLILSDLRLPDHD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI+L + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 GIDLLKWMNEKGIDIPLIIMTGYADIQSAVQAMKLGARDYVAKPVNPEELLKKMSEALQA 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|240850786|ref|YP_002972186.1| two component response regulator [Bartonella grahamii as4aup] gi|240267909|gb|ACS51497.1| two component response regulator [Bartonella grahamii as4aup] Length = 121 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++K+++ ED++ +M+ F L++A +GYE + NG A D R SL+L DI +P Sbjct: 1 MSKKVMIVEDNELNMKLFRDLVEA---SGYETIETRNGLMALDLARSSMPSLILVDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEV 114 E+ GI++ ++ E D +L+ + + A A+ D A + +SKP + + V Sbjct: 58 EVSGIDVIKQLKE-DEELRSIPVVAVTAFAMKGDEERIRASGCEEYMSKPISVPHFITMV 116 Query: 115 NRLL 118 L Sbjct: 117 KHFL 120 >gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 211 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L K +E++ NG A VR+E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTKEEFEIIGEAENGEEALAFVRKERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRLKQYDATIKILMLSSFS 86 >gi|225378583|ref|ZP_03755804.1| hypothetical protein ROSEINA2194_04251 [Roseburia inulinivorans DSM 16841] gi|225209420|gb|EEG91774.1| hypothetical protein ROSEINA2194_04251 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A + +R+ F+L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAAEAIRQREFNLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|171319008|ref|ZP_02908135.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171095763|gb|EDT40716.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1088 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ + + L + E V ++G +A + + +LLTD+ MP +DG E Sbjct: 865 RVLVAEDNPVNQSLFQEQLNRLDCEAVVLSDGEAALAALARGDWDVLLTDLGMPGIDGYE 924 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 LAR A P + ++ +T +A + + +V+ KP LRD + EV Sbjct: 925 LARAARNTKPSMPIIAVTAYATLEERERCASAGMTRVMLKPLSLAQLRDALIEV 978 >gi|170741055|ref|YP_001769710.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195329|gb|ACA17276.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1057 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 9/118 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMD 60 Q++L+ ED+ ++ RF + L GYE N A ++ V F ++ +D+VMP M Sbjct: 931 QRVLVVEDNIEVGRFATQILEDLGYETALAVNAEDALERLGVGGTGFDVVFSDVVMPGMG 990 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI AR P+L V+ +G++ V S ++L KP+ ++V+R+L Sbjct: 991 GIAFARLLERRLPNLPVVLTSGYSHVLAQESSTG---FELLHKPYS----ADQVSRIL 1041 >gi|167835281|ref|ZP_02462164.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia thailandensis MSMB43] Length = 451 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD+ +RR +++L AG++V+ + +A + + ++++DI +P G++ Sbjct: 6 QVIYIEDDELVRRASVQSLQLAGFDVIGFGSVEAAEKAIGGDAAGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 66 LLAQCRERTPDVPVVLVTGHGDISMAVQAMRDGAYDFIEKPFAAERLIETVRRAL 120 >gi|166032303|ref|ZP_02235132.1| hypothetical protein DORFOR_02006 [Dorea formicigenerans ATCC 27755] gi|166028026|gb|EDR46783.1| hypothetical protein DORFOR_02006 [Dorea formicigenerans ATCC 27755] Length = 534 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K++L +D++++ + + + G+EVV S NG A + + + ++LTDI MP MD Sbjct: 5 KVILVDDEEEVIDVMEAKIRWNELGFEVVGSATNGVKALELIEKLQPDVVLTDIKMPYMD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ELARR P++ +M TGF ++ + + + KP + +L + RL Sbjct: 65 GLELARRVRADYPNIYIMLCTGFDEFEYAKEAVHLEIKEYMLKPINAVELSECLTRL 121 >gi|220923690|ref|YP_002498992.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219948297|gb|ACL58689.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 737 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED + R L AG++V + GA A V+ + + L+L D+ MP MDG+ Sbjct: 496 RILLVEDLEHNRDLARMLLVNAGHQVDTAETGAEAVAAVQAKAYDLVLMDVQMPVMDGVT 555 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 +R ELD + + I A L + +A + + KPF +L+ +VN L Sbjct: 556 ATKRIRELDHPARDVPIIAMTANVLPQQVKSFGDAGMNDHVGKPFKKPELLKKVNTWLQR 615 Query: 121 KN 122 N Sbjct: 616 PN 617 >gi|160889953|ref|ZP_02070956.1| hypothetical protein BACUNI_02387 [Bacteroides uniformis ATCC 8492] gi|156860341|gb|EDO53772.1| hypothetical protein BACUNI_02387 [Bacteroides uniformis ATCC 8492] Length = 1330 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ ED+D++R +L ++ Y V CNNG A V++ L+L+DI+MPEM G Sbjct: 1067 HRILIVEDNDELRNYLFQSFSPI-YNVQVCNNGKEALTIVKQFWPGLILSDIMMPEMRGD 1125 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I AL + N + + + KPF + L + L Sbjct: 1126 EL---CIAIKNDIETSHIPVVLLTALGDEKNILEGLHIGADEYIVKPFSINILKASIANL 1182 Query: 118 L 118 L Sbjct: 1183 L 1183 >gi|153953324|ref|YP_001394089.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346205|gb|EDK32741.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 228 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KI L ED+ ++ L K L GY+V + ++G+ A +++++ P L + DI++P+++ Sbjct: 1 MSKKIYLVEDELNLNILLEKYLKNEGYDVTTFSDGSCAKNRIKDMP-DLWILDIMLPDIN 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G L + E + + V+FI+ + L D LSKPF R+LV Sbjct: 60 GYALIKCIKENNENTPVIFISAKNEEFDRVVGLELGSDD-------YLSKPFLPRELVIR 112 Query: 114 VNRLL 118 N L+ Sbjct: 113 TNNLI 117 >gi|15642201|ref|NP_231833.1| chemotaxis protein CheV [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586245|ref|ZP_01676035.1| chemotaxis protein CheV [Vibrio cholerae 2740-80] gi|121726530|ref|ZP_01679779.1| chemotaxis protein CheV [Vibrio cholerae V52] gi|147674785|ref|YP_001217719.1| chemotaxis protein CheV [Vibrio cholerae O395] gi|153213655|ref|ZP_01948928.1| chemotaxis protein CheV [Vibrio cholerae 1587] gi|153817085|ref|ZP_01969752.1| chemotaxis protein CheV [Vibrio cholerae NCTC 8457] gi|153820839|ref|ZP_01973506.1| chemotaxis protein CheV [Vibrio cholerae B33] gi|153825325|ref|ZP_01977992.1| chemotaxis protein CheV [Vibrio cholerae MZO-2] gi|153829340|ref|ZP_01982007.1| chemotaxis protein CheV [Vibrio cholerae 623-39] gi|183179560|ref|ZP_02957771.1| chemotaxis protein CheV [Vibrio cholerae MZO-3] gi|227082326|ref|YP_002810877.1| chemotaxis protein CheV [Vibrio cholerae M66-2] gi|229507721|ref|ZP_04397226.1| chemotaxis protein CheV [Vibrio cholerae BX 330286] gi|229512084|ref|ZP_04401563.1| chemotaxis protein CheV [Vibrio cholerae B33] gi|229513846|ref|ZP_04403308.1| chemotaxis protein CheV [Vibrio cholerae TMA 21] gi|229519219|ref|ZP_04408662.1| chemotaxis protein CheV [Vibrio cholerae RC9] gi|229522151|ref|ZP_04411568.1| chemotaxis protein CheV [Vibrio cholerae TM 11079-80] gi|229607225|ref|YP_002877873.1| chemotaxis protein CheV [Vibrio cholerae MJ-1236] gi|254225798|ref|ZP_04919403.1| chemotaxis protein CheV [Vibrio cholerae V51] gi|254286489|ref|ZP_04961446.1| chemotaxis protein CheV [Vibrio cholerae AM-19226] gi|254849331|ref|ZP_05238681.1| chemotaxis protein CheV [Vibrio cholerae MO10] gi|255747099|ref|ZP_05421044.1| chemotaxis protein CheV [Vibrio cholera CIRS 101] gi|262161357|ref|ZP_06030467.1| chemotaxis protein CheV [Vibrio cholerae INDRE 91/1] gi|262167772|ref|ZP_06035474.1| chemotaxis protein CheV [Vibrio cholerae RC27] gi|262191694|ref|ZP_06049870.1| chemotaxis protein CheV [Vibrio cholerae CT 5369-93] gi|298500420|ref|ZP_07010225.1| chemotaxis protein CheV [Vibrio cholerae MAK 757] gi|9656758|gb|AAF95347.1| chemotaxis protein CheV [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549511|gb|EAX59537.1| chemotaxis protein CheV [Vibrio cholerae 2740-80] gi|121630983|gb|EAX63362.1| chemotaxis protein CheV [Vibrio cholerae V52] gi|124115854|gb|EAY34674.1| chemotaxis protein CheV [Vibrio cholerae 1587] gi|125621704|gb|EAZ50033.1| chemotaxis protein CheV [Vibrio cholerae V51] gi|126512353|gb|EAZ74947.1| chemotaxis protein CheV [Vibrio cholerae NCTC 8457] gi|126521631|gb|EAZ78854.1| chemotaxis protein CheV [Vibrio cholerae B33] gi|146316668|gb|ABQ21207.1| chemotaxis protein CheV [Vibrio cholerae O395] gi|148875181|gb|EDL73316.1| chemotaxis protein CheV [Vibrio cholerae 623-39] gi|149741009|gb|EDM55078.1| chemotaxis protein CheV [Vibrio cholerae MZO-2] gi|150423438|gb|EDN15382.1| chemotaxis protein CheV [Vibrio cholerae AM-19226] gi|183012971|gb|EDT88271.1| chemotaxis protein CheV [Vibrio cholerae MZO-3] gi|227010214|gb|ACP06426.1| chemotaxis protein CheV [Vibrio cholerae M66-2] gi|227014098|gb|ACP10308.1| chemotaxis protein CheV [Vibrio cholerae O395] gi|229341076|gb|EEO06081.1| chemotaxis protein CheV [Vibrio cholerae TM 11079-80] gi|229343908|gb|EEO08883.1| chemotaxis protein CheV [Vibrio cholerae RC9] gi|229349027|gb|EEO13984.1| chemotaxis protein CheV [Vibrio cholerae TMA 21] gi|229352049|gb|EEO16990.1| chemotaxis protein CheV [Vibrio cholerae B33] gi|229355226|gb|EEO20147.1| chemotaxis protein CheV [Vibrio cholerae BX 330286] gi|229369880|gb|ACQ60303.1| chemotaxis protein CheV [Vibrio cholerae MJ-1236] gi|254845036|gb|EET23450.1| chemotaxis protein CheV [Vibrio cholerae MO10] gi|255735501|gb|EET90901.1| chemotaxis protein CheV [Vibrio cholera CIRS 101] gi|262023837|gb|EEY42536.1| chemotaxis protein CheV [Vibrio cholerae RC27] gi|262028668|gb|EEY47322.1| chemotaxis protein CheV [Vibrio cholerae INDRE 91/1] gi|262032433|gb|EEY50995.1| chemotaxis protein CheV [Vibrio cholerae CT 5369-93] gi|297541113|gb|EFH77167.1| chemotaxis protein CheV [Vibrio cholerae MAK 757] gi|327484721|gb|AEA79128.1| Chemotaxis protein CheV [Vibrio cholerae LMA3894-4] Length = 308 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EVV+ +G AY+K+ E SL+++DI Sbjct: 182 RRILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLSEGPISNQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHNELK-DLYVILHSSLSGV 275 >gi|327191666|gb|EGE58673.1| putative two-component sensor histidine kinase/response regulator hybrid protein (FixL-related) [Rhizobium etli CNPAF512] Length = 292 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 + IL+ EDD +RR + L Y V+ NG A ++ +LL +D+ MP M+ Sbjct: 53 TETILVVEDDARVRRVTVSRLQTLAYFVIEATNGIDALKELEAGHDVALLFSDVAMPGMN 112 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELAR E P +K++ +GF+ D A L KP+ ++ + LL Sbjct: 113 DDELARNVRERWPRVKILLTSGFSE-PHAADKEIEAGAGWLKKPYTASEMSTRLRLLLAA 171 Query: 121 K 121 + Sbjct: 172 R 172 >gi|319404198|emb|CBI77791.1| two-component system response regulator [Bartonella rochalimae ATCC BAA-1498] gi|319407208|emb|CBI80847.1| two-component system response regulator [Bartonella sp. 1-1C] Length = 121 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +K+++ ED++ +M+ F LI+A GYE V NG A D R SL+L DI +P Sbjct: 1 MLKKVMIVEDNELNMKLFRDLIEA---CGYETVETRNGLIALDLARSSKPSLILMDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEV 114 E+ GI++ ++ E D +LK + + A A+ D A + +SKP + + V Sbjct: 58 EVSGIDIIKQLKE-DEELKSIPVIAVTAFAMKGDEERIRASGCEEYMSKPISVPHFITMV 116 Query: 115 NRLL 118 L Sbjct: 117 KSFL 120 >gi|315646640|ref|ZP_07899757.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277966|gb|EFU41287.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 15/123 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 K+L+ ED++ +R F++ L + G++V+ +G A ++ P + L D+++P +DG Sbjct: 3 KVLILEDEESIRSFIVINLKRNGFDVLETGDGNEALRMLQTTPDIDIALLDVMVPGIDGF 62 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ RR E + + ++F+T A+++ D + +SKPF +L+ + Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDH-------VSKPFSPTELIARLQ 115 Query: 116 RLL 118 LL Sbjct: 116 SLL 118 >gi|269139014|ref|YP_003295715.1| DNA-binding response regulator in two-component regulatory system with CusS [Edwardsiella tarda EIB202] gi|267984675|gb|ACY84504.1| DNA-binding response regulator in two-component regulatory system with CusS [Edwardsiella tarda EIB202] gi|304558949|gb|ADM41613.1| Copper-sensing two-component system response regulator CusR [Edwardsiella tarda FL6-60] Length = 227 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++L K L +AG+ V +NG + Y + L++ DI++P+++G E Sbjct: 2 KILIVEDEVKTGKYLCKGLTEAGFVVDLADNGLTGYHLAMTAGYDLIILDILLPDVNGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + L ++ ++ + L KPF +L+ V LL Sbjct: 62 IVRMLRSANQGLPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|260172565|ref|ZP_05758977.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1324 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +++ L+ + + Y+V + ++G A + ++++ S++L+D+VMP M G Sbjct: 1062 DAKMLIVEDNESIKQMLV-GIFETFYQVSTASDGVEALEMIQKDMPSIILSDVVMPRMSG 1120 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1121 TELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCNNLV 1179 >gi|224540722|ref|ZP_03681261.1| hypothetical protein BACCELL_05636 [Bacteroides cellulosilyticus DSM 14838] gi|224517665|gb|EEF86770.1| hypothetical protein BACCELL_05636 [Bacteroides cellulosilyticus DSM 14838] Length = 1301 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD DMR +L+ +L + Y+V+ +G A + RE ++++DIVMP ++G EL Sbjct: 1059 LLLAEDDKDMREYLMNSL-SSEYKVIGVPDGGKALEMAREINPDIIISDIVMPVLEGDEL 1117 Query: 65 AR 66 R Sbjct: 1118 CR 1119 >gi|222107129|ref|YP_002547920.1| two component response regulator for C4-dicarboxylate transport [Agrobacterium vitis S4] gi|221738308|gb|ACM39204.1| two component response regulator for C4-dicarboxylate transport [Agrobacterium vitis S4] Length = 458 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++L ++D D+ + L AG+ V + + A ++ + ++++DI MP++DG+EL Sbjct: 12 VILIDNDRDLLAATGQTLELAGFSVQAFSAPLDALRRISSDFRGVIVSDIRMPDIDGLEL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R +DP+L V+ +TG +A+ + ++KPF L V+R Sbjct: 72 FSRVKAMDPELPVILVTGHGDIAMAVQAIKDGTYDFITKPFATDRLQQSVHR 123 >gi|171060373|ref|YP_001792722.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777818|gb|ACB35957.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1021 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 8/121 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+D R F + L G EV +GA A ++V+++ + +L DI MP MDG+E Sbjct: 670 QLLLVEDNDINREFASEFLRSEGIEVDEAVDGAQALERVQQQAYDAVLMDIQMPVMDGLE 729 Query: 64 LAR--RATELDPD---LKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 AR RA P L + I A+A+ D+ + A + ++KP L++ + Sbjct: 730 AARAIRALGAQPGHERLATLPIIAMTALAMAQDAQRSRAAGMNDHVTKPIAPDRLLSVLT 789 Query: 116 R 116 R Sbjct: 790 R 790 >gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 248 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G++V + NG +A R+ ++ D+++P++DG Sbjct: 23 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGFA 82 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E+ P + V+F+T AV ++KPF L +++ + LL Sbjct: 83 VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALL 137 >gi|219849281|ref|YP_002463714.1| CheA signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543540|gb|ACL25278.1| CheA signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 740 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D R L L AGYEV + +GA A D++R + L+++DI MP +DG Sbjct: 619 RLLVVDDSFTTRELLRSILQSAGYEVTAAIDGADALDRLRSTTYDLVVSDIEMPRVDGFT 678 Query: 64 LA---RRATELDPDLKVMFITGFAA 85 L RR L DL V+ IT A+ Sbjct: 679 LTSRIRRELALS-DLPVVLITSLAS 702 >gi|94501268|ref|ZP_01307789.1| response regulator [Oceanobacter sp. RED65] gi|94426539|gb|EAT11526.1| response regulator [Oceanobacter sp. RED65] Length = 430 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D+ M L + YE + N+GA D ++ F ++++D+ MPEMDG Sbjct: 6 RILFVDDEAQMLTALGRVFRGKRYETHTANSGAEGIDLIKSHKFDVIISDMRMPEMDGAA 65 Query: 64 LARRATELDPDLKVMFITGFA 84 + L PD + + +TG++ Sbjct: 66 FLAQTITLTPDSRRILLTGYS 86 >gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei TW08/27] gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma whipplei TW08/27] Length = 227 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q KIL+ +D+ ++R L +L AGY VV+ NGA A V E L++ D+++P+M Sbjct: 1 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +R E V+F++ + ++KPF L +++ V +L Sbjct: 61 SGFAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAIL 119 >gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 220 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + +ALG+ GY V +G+SA + E F L + D+ +P MDG+E Sbjct: 2 RLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + RR +L V+ +T A D A +A L KPF L +L + LL Sbjct: 62 VLRRLRGSGSNLPVLILTARDA---TEDRIAGLDAGADDYLIKPFDLAELKARLRALL 116 >gi|37527064|ref|NP_930408.1| two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786497|emb|CAE15553.1| Two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 225 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KAL +G+ V ++G A ++ E ++LL+ D+ +P +DG+ Sbjct: 2 RLLLVEDHPELLHWLQKALSSSGFAVDVASDGIVADQLLQTENYALLILDVSLPRLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + +L V+ +T V+ L+KPF L++L + LL Sbjct: 62 LLVRLRKRGQNLPVLLLTAKTDVSERVKGLNSGADDYLTKPFDLQELEARIRALL 116 >gi|329767499|ref|ZP_08259022.1| hypothetical protein HMPREF0428_00719 [Gemella haemolysans M341] gi|328835833|gb|EGF85555.1| hypothetical protein HMPREF0428_00719 [Gemella haemolysans M341] Length = 74 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 44/74 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ ++ + L + GY+V N+G A +K ++ +SL++TDI+MP MD Sbjct: 1 MVNKILLVDDEIEITEINKRYLEQGGYDVDIANDGKEALEKYKKNKYSLIITDIMMPNMD 60 Query: 61 GIELARRATELDPD 74 G +L LD + Sbjct: 61 GYDLISEVQYLDSE 74 >gi|325687414|gb|EGD29435.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 240 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 14/98 (14%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF----- 83 + NG A+ K ++ P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 27 IAQAENGREAWQKFQKNPADILLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGYDDFDY 86 Query: 84 --AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A+ L D L KPF D+ + +L T Sbjct: 87 ARTAIKLGADD-------YLLKPFSKDDVEEMLAKLQT 117 >gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1] Length = 232 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 12/122 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-ASAYDKVREEPFSLLLTDIVMPEMDG 61 ++L+ EDDD +R + + LG AGY V+ +G A + V P +++L D+++P MDG Sbjct: 5 SRVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVL-DLMLPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 +++ R P L ++ +T AL + + + ++ + KPF R+LV + Sbjct: 64 LQVCRELRARRPQLPIVVLT-----ALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGS 118 Query: 117 LL 118 +L Sbjct: 119 VL 120 >gi|315923585|ref|ZP_07919825.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313697460|gb|EFS34295.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1317 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DM F+ K L A Y V+ +G A + + + LL++D++MP MDG+EL Sbjct: 1072 ILVVEDNQDMLTFIAKQLSSA-YSVLKAKDGVEALEILEDANIDLLISDVMMPRMDGMEL 1130 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL--------SKPFHLRDLVNEVNR 116 R L DL I V L +N + L KPF + L+ + Sbjct: 1131 CHR---LKTDLTYSHI---PIVLLTAKTNLESKIEGLKLAADAYIEKPFSVEYLIATIES 1184 Query: 117 LL 118 LL Sbjct: 1185 LL 1186 >gi|296187449|ref|ZP_06855844.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|296047971|gb|EFG87410.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 244 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+ + +D++ MR L KA+ K G+++V +G + V E+ ++ D+ MP+ Sbjct: 1 MELKVFIGDDEEGMRMVLKKAIEKIEGFKLVGEAADGEAVLSFVEEKHPEIIFLDVEMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++G+E A+R +++P ++F+T A A D+ + KPF L + +NR+ Sbjct: 61 LNGVECAKRIMDINPRTIIIFVT--AHDAYMSDAFQLYAFDYIVKPFKLDRIYQTLNRIK 118 Query: 119 TI 120 T+ Sbjct: 119 TL 120 >gi|270294633|ref|ZP_06200835.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270276100|gb|EFA21960.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 1330 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ ED+D++R +L ++ Y V CNNG A V++ L+L+DI+MPEM G Sbjct: 1067 HRILIVEDNDELRNYLFQSFSPI-YNVQVCNNGKEALTIVKQFWPGLILSDIMMPEMRGD 1125 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D++ I AL + N + + + KPF + L + L Sbjct: 1126 EL---CIAIKNDIETSHIPVVLLTALGDEKNILEGLHIGADEYIVKPFSINILKASIANL 1182 Query: 118 L 118 L Sbjct: 1183 L 1183 >gi|257484397|ref|ZP_05638438.1| response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486432|ref|ZP_07004493.1| Serine phosphatase RsbU, regulator of sigma subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159060|gb|EFI00120.1| Serine phosphatase RsbU, regulator of sigma subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324803|gb|EFW80875.1| response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330986262|gb|EGH84365.1| response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013191|gb|EGH93247.1| response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 394 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 235 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 15/122 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED++ R L LG+ GY+VV+ G A ++ E L+L D+++P + G E Sbjct: 3 RILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGADLVLLDLMLPGLPGTE 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR LD D+ V+ +T + L D ++KP+ R+L+ + Sbjct: 63 VCRR-LRLDSDVPVIMLTAKDDEIDKVVGLELGADD-------YVTKPYSSRELLARIRA 114 Query: 117 LL 118 +L Sbjct: 115 VL 116 >gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 256 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD +R L L K GY + +G A R SL++ D+++P +DG Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R + + ++ +T ++ + + LSKPF +R+L+ + LL Sbjct: 90 ELC-RLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALL 144 >gi|146339133|ref|YP_001204181.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146191939|emb|CAL75944.1| putative sensor histidine kinase with a Response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 565 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 66/114 (57%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDG 61 ++LL EDDD++ + + L + GY+V ++ A+A + + P L+ +D++MP M+G Sbjct: 440 RVLLVEDDDEVAALVSEMLRQLGYDVTRASSAAAALGALADGRPVDLVFSDVMMPGGMNG 499 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +ELAR D+ ++ +G++ A++ A ++LSKP+ + +L ++ Sbjct: 500 VELAREIQRRRVDMPILLTSGYSGAAVHAAREA--GVRILSKPYRIDELAAAID 551 >gi|144900134|emb|CAM76998.1| DNA-binding response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 243 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L EDD D+R + L GYEV + +G A +R + L L D+ +P+MDG+ L Sbjct: 7 LYLIEDDADIRNLVRTVLEGYGYEVQAFGSGRDARAAIRRQAPELCLVDLGLPDMDGLTL 66 Query: 65 ARRATELDPDLK--VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R EL D++ V+ +TG V+ + KPF R+LV +N ++ Sbjct: 67 VR---ELWGDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARINSVI 119 >gi|46578527|ref|YP_009335.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46447938|gb|AAS94594.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311232453|gb|ADP85307.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris RCH1] Length = 476 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R+ + L G++V ++G VREE ++ D+ MP M+G++ Sbjct: 3 KILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + E+D L V+ +T +A ++ + KPF + D++ +++ Sbjct: 63 ALKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDK 115 >gi|78222609|ref|YP_384356.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193864|gb|ABB31631.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 458 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 55/110 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ MR FL L + GY V + A + + + L+++D+ MP +D Sbjct: 1 MEIRILVVDDELSMREFLAILLKREGYAVDQADCAEKALEFLDSITYDLVISDVKMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GI L R E PD V+ +T F+ ++ ++KPF + ++ Sbjct: 61 GIALLGRIKENSPDTAVLMMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEV 110 >gi|32400396|dbj|BAC78687.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1145 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 936 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 995 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 996 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCA 1055 Query: 119 TI 120 T+ Sbjct: 1056 TV 1057 >gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 848 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 12/118 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+ + FL G+ V NG +K+R +P+ L+L DI MP MDG+E Sbjct: 622 LLLAEDNRINQFFLKDYFEAMGHSVDIAENGRLVLEKLRSKPYDLILMDIQMPHMDGLEA 681 Query: 65 AR--RATELDP--DLKVMFITGFAAVALNPDSN----APKNAKVLSKPFHLRDLVNEV 114 R R++ +P D+ ++ +T + AL+ D + A +A VL KP + +L E+ Sbjct: 682 TRIIRSSNDEPWADIPIVALTAY---ALSQDRSKAMEAGMDAYVL-KPINFEELEREI 735 >gi|332708948|ref|ZP_08428919.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332352490|gb|EGJ32059.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 373 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%) Query: 6 LLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD FL++ L + GYE+ NG A +++ P L+L D++MPEMDG E+ Sbjct: 15 ILAVDDSPDNLFLLQTLLEEEGYEITLAENGRVALERIESSPPELVLLDVMMPEMDGFEV 74 Query: 65 AR--RATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ P + ++ IT + +V D A + KP + +L+ V LL + Sbjct: 75 TKRIRSNPKLPFIPILLITAYDHPSVVKGLDMGA---DDFIRKPVEVDELLARVRSLLRL 131 Query: 121 KN 122 K+ Sbjct: 132 KH 133 >gi|328953629|ref|YP_004370963.1| putative PAS/PAC sensor protein [Desulfobacca acetoxidans DSM 11109] gi|328453953|gb|AEB09782.1| putative PAS/PAC sensor protein [Desulfobacca acetoxidans DSM 11109] Length = 937 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 ILL +D++ +R + LG+ GY+V+ G A V+E E L++ D+VMP + G Sbjct: 788 ILLVDDEEPVRAIGARILGRLGYKVIPAATGMQAIAIVQERREEIDLVVLDMVMPGLSGR 847 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL---SKPFHLRDLVNEVNRLL 118 E R E+DP++KV+ ++A +++ D + L KP+ + L ++ +L Sbjct: 848 ETFYRLREIDPEIKVLL---YSAHSMDEDVHLMMEKGALGFIQKPYRIAALSQKIAAML 903 >gi|320101980|ref|YP_004177571.1| Fis family two component sigma54 specific transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319749262|gb|ADV61022.1| two component, sigma54 specific, transcriptional regulator, Fis family [Isosphaera pallida ATCC 43644] Length = 522 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 54/108 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R L L + GYE + +G +A + R + L D+ +P G+E Sbjct: 16 RVLITDDEPDVRWSLATLLSREGYEPIEAADGPTALELARRNAPDVALLDLNLPRRHGLE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + R E+DP L V+ IT + + LSKPF+ D++ Sbjct: 76 VFRDLLEVDPGLPVVVITAHGSPDAARQVASQGAFGYLSKPFNNEDVL 123 >gi|319640566|ref|ZP_07995286.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A] gi|317387843|gb|EFV68702.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A] Length = 1350 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G + + +++++DI+MP MDGIEL Sbjct: 1100 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQARIPNIIVSDIMMPVMDGIEL 1158 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1159 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1217 >gi|300694230|ref|YP_003750203.1| response regulator/hd domain protein [Ralstonia solanacearum PSI07] gi|299076267|emb|CBJ35581.1| putative response regulator/HD domain protein [Ralstonia solanacearum PSI07] Length = 468 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 7/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ + L + L GY V++ +GA+ + + P L+++D+ MP M+G E Sbjct: 46 VLLVDDEPSVLSALRRLLRPTGYRVLTAESGAAGLELLAAHPVDLIVSDMRMPNMNGAEF 105 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 RA PD + +TG+A + A N + L+KP+ +DL LLT+++ Sbjct: 106 LSRARAQSPDTMRILLTGYAEIDAAVCAINEGGVYRYLNKPWDDQDL------LLTVRH 158 >gi|258404235|ref|YP_003196977.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] gi|257796462|gb|ACV67399.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] Length = 448 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 10/107 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL +D+ + + L L K GYEV + +G S + ++E + +L+TD+ +P++ G+ Sbjct: 5 KRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLPDITGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKP 104 ++ + P L V+ IT + ++ SNA + K+ L+KP Sbjct: 65 DILEQVKATWPKLPVVMITAYGSI-----SNAVQAMKLGAFNYLTKP 106 >gi|186686366|ref|YP_001869562.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468818|gb|ACC84619.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 807 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + R + L G+ VV +NG +K +L++TD++MPEMDG EL Sbjct: 598 ILMVDDRWENRTVITNLLQPLGFNVVEASNGKEGLEKAIALKPNLIVTDLLMPEMDGFEL 657 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLTI 120 + P+++ + I +A D N A LSKP + +L++++ + L + Sbjct: 658 IKHLRH-TPEIQDVLIIVSSASVFEADRNRSLQAGGNAFLSKPIQVDELLHQLEQYLNL 715 >gi|167753151|ref|ZP_02425278.1| hypothetical protein ALIPUT_01422 [Alistipes putredinis DSM 17216] gi|167659465|gb|EDS03595.1| hypothetical protein ALIPUT_01422 [Alistipes putredinis DSM 17216] Length = 516 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D+ ++ + + L GYEV +CNNG A D E + L++ D +MP M G+E Sbjct: 3 KILWVDDEIELLKPHVLFLRGKGYEVDTCNNGYDAIDMATEGNYDLIILDEMMPGMTGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + E+ P V+ +T + + K A L KP VN LL+IK Sbjct: 63 TLPKIKEIRPTTPVIMVTKSEEENIMDKAVGSKIADYLIKP------VNPNQVLLSIK 114 >gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] Length = 237 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 44/70 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N KIL+A+D+ ++R L L GY+VV +G A D + E LL+ DI+MP+++ Sbjct: 7 LNNKILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDVDLLVLDIMMPKVN 66 Query: 61 GIELARRATE 70 GIE+ ++ + Sbjct: 67 GIEVCKKVRQ 76 >gi|86606795|ref|YP_475558.1| sensor histindine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86555337|gb|ABD00295.1| sensor histindine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 942 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +L+ ED ++RRFL L +AG+ V +G A + + R P ++TDI MP +DG Sbjct: 811 LLVVEDSVNVRRFLAMTLERAGFRVEQARDGQEALEHLQRGIPIRAVITDIEMPRLDGFG 870 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RA L L V+ +T + + + LSKPF ++L+ ++ +LL Sbjct: 871 LLAQIRAHPLYDQLPVVMLTSRSGEKHRQLAQRLGASAYLSKPFQEQELIQKLRQLL 927 >gi|154244982|ref|YP_001415940.1| two component, sigma54 specific, Fis family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159067|gb|ABS66283.1| two component, sigma54 specific, transcriptional regulator, Fis family [Xanthobacter autotrophicus Py2] Length = 461 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 56/121 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ L AL + G+E S N A A L+L+D+ MP Sbjct: 1 MAAKILIVDDEVRHGEVLEAALAERGFEATSTNTVAKALTYCTSHAVDLVLSDLRMPGQG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L + E P+L V+ +T +A V D ++KP L D+V + R L + Sbjct: 61 GSDLLKALKEQQPELPVIIMTAYATVRGAVDLVKDGAFDYVAKPLDLDDVVATMARALRL 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|87121208|ref|ZP_01077098.1| chemotaxis protein CheY [Marinomonas sp. MED121] gi|86163365|gb|EAQ64640.1| chemotaxis protein CheY [Marinomonas sp. MED121] Length = 121 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ +D +R+ + L A Y V S +G A D + + F +LTD MP MD Sbjct: 1 MSNNLLIVDDSASVRQMIEATLKSASYSVTSAKDGKEALDLCKTKRFDFVLTDQNMPRMD 60 Query: 61 GIELARRATELDPDLK--VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + LD + ++ +T A A+ A + KPF + L+ V ++L Sbjct: 61 GLTLIKSLRALDAYKRTPLIMLTTEAGDAMKAQGKAVGATGWMVKPFDPKQLLQVVAKVL 120 >gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1236 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D + PF +L DI MP MDG+ Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 ARRATE-LDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 AR E D L ++ +T A S A ++KP L +L ++ + KN Sbjct: 1174 ARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWIKHKN 1233 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N + L+ +D+ + + +EV + +GA A K+ +P LLL D +MPEMDG Sbjct: 966 NLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDG 1025 Query: 62 IELARRATELDPDLK------VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ + + + ++ +T +AA L + ++ VL KPF L +E+ Sbjct: 1026 GDVISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|330936571|ref|XP_003305441.1| hypothetical protein PTT_18287 [Pyrenophora teres f. teres 0-1] gi|311317524|gb|EFQ86457.1| hypothetical protein PTT_18287 [Pyrenophora teres f. teres 0-1] Length = 1259 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---------PFSLLLTDIV 55 +L+ ED+ ++ L K L KAG V + +NG A + + P S++L D Sbjct: 1126 VLVVEDNLVNQKVLCKQLTKAGCNVSTADNGVWALKHLEKTNLRVDTNGIPLSIILIDCE 1185 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRD 109 MPEMDG+ R+ E++ + K+ AV N AK V+ KPF + D Sbjct: 1186 MPEMDGLTCCRKIREMEQNGKLTKHVPIIAVTANIRGGQIDTAKEAGMDEVIGKPFRIPD 1245 Query: 110 LVNEVNRLL 118 L+ ++ LL Sbjct: 1246 LLAKMKGLL 1254 >gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1228 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L KAG +V C+NG +R+ F ++L D+ MP MDG+ Sbjct: 1096 VLLAEDDRVSAIAARRHLEKAGCQVTVCDNGGQVLTALRQNEFDVVLMDVHMPVMDGVTA 1155 Query: 65 ARR-----ATELDPDLKVMFITGFA 84 R A E + D+ ++ +T FA Sbjct: 1156 TRAIRQGGAGEANKDIPIIALTAFA 1180 >gi|255021371|ref|ZP_05293419.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidithiobacillus caldus ATCC 51756] gi|254969234|gb|EET26748.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidithiobacillus caldus ATCC 51756] Length = 447 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D L + L +AG EV +G A +++R+ F L+L+D M MDG Sbjct: 7 RVLLVEDDVDFAEVLAEGLEEAGMEVQQAADGKEALNRLRDGQFDLILSDAQMQPMDGYG 66 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L A RA P + +M G A+ N L KPF +++L+ ++ R Sbjct: 67 LLAALRAQPGHPPVVMMTAWGTIDEAVRALQNGA--VDYLVKPFAMQELLTKLQR 119 >gi|254503135|ref|ZP_05115286.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222439206|gb|EEE45885.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 232 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V S +G SA D ++ +P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRVQSYTDGTSALDGLQSDPPELAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQT-SDLPVIFLTSKDDEIDELFGLKMGADD-------FIRKPFSQRLLVERVRAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|120603891|ref|YP_968291.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120564120|gb|ABM29864.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris DP4] Length = 476 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R+ + L G++V ++G VREE ++ D+ MP M+G++ Sbjct: 3 KILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + E+D L V+ +T +A ++ + KPF + D++ +++ Sbjct: 63 ALKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDK 115 >gi|159900772|ref|YP_001547019.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893811|gb|ABX06891.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 804 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ + + + + + G++ V +G +A V + PF L+L+D+ MP M+G + Sbjct: 674 KILVVDDEEGVAQVIQRLVRDLGHQPVVVASGEAALQAVDQAPFDLILSDVKMPGMNGFQ 733 Query: 64 LARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + P+L +FITG + +++KPF + L +N + Sbjct: 734 LYRALQQKAPELAKHFIFITGDTMSPATITAMRQIGTPMIAKPFSAKKLERTINEFM 790 >gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ N+G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ D+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1236 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D + PF +L DI MP MDG+ Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 ARRATE-LDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 AR E D L ++ +T A S A ++KP L +L ++ + KN Sbjct: 1174 ARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWIKHKN 1233 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N + L+ +D+ + + +EV + +GA A K+ +P LLL D +MPEMDG Sbjct: 966 NLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDG 1025 Query: 62 IELARRATELDPDLK------VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ + + + ++ +T +AA L + ++ VL KPF L +E+ Sbjct: 1026 GDVISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|330988729|gb|EGH86832.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 690 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDEPSVRMLVAEVITGLGYNCLEAGDAQSGLQILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|320325026|gb|EFW81095.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320327868|gb|EFW83874.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882074|gb|EGH16223.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 690 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDEPSVRMLVAEVITGLGYNCLEAGDAQSGLQILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|319901144|ref|YP_004160872.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] gi|319416175|gb|ADV43286.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] Length = 230 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+ + F+++ L + + V+ +NG A + + + + L+L DI++P +DG+EL Sbjct: 3 ILLIEDNARISEFIVRGLEENDHAVIWTDNGIEARNMITQRKWDLILLDIMLPGIDGLEL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + ++ I+ + + L+KPF R+L+ +N L Sbjct: 63 LQYTRRKKVNAPILVISALSETNDRIKALDYGADNYLTKPFLFRELIAHINAL 115 >gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A + + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAEGLPVPILILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L AL G+EV + G A RE ++ D+++P+ DG+E Sbjct: 24 RVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDFDGLE 83 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR +P++ V+F+T AV ++KPF L ++V V L+ Sbjct: 84 VLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALM 138 >gi|260175353|ref|ZP_05761765.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1321 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DM F+ K L A Y V+ +G A + + + LL++D++MP MDG+EL Sbjct: 1076 ILVVEDNQDMLTFIAKQLSSA-YSVLKAKDGVEALEILEDANIDLLISDVMMPRMDGMEL 1134 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL--------SKPFHLRDLVNEVNR 116 R L DL I V L +N + L KPF + L+ + Sbjct: 1135 CHR---LKTDLTYSHI---PIVLLTAKTNLESKIEGLKLAADAYIEKPFSVEYLIATIES 1188 Query: 117 LL 118 LL Sbjct: 1189 LL 1190 >gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 240 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL EDD D+ L L GY++ NGA A ++ ++ + ++ D+++P +DG+ Sbjct: 5 RKILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLMLPGVDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L V+ I+ + L KPF + +LV V L Sbjct: 65 EICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALF 120 >gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium] Length = 232 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED++++ L L K GY+V+ ++G A ++ + L++ DI+MP+MDG E+ Sbjct: 6 ILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ ++ ++F++ + ++KPF +LV VN L Sbjct: 66 TRQV-RAQYNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQL 118 >gi|210610542|ref|ZP_03288468.1| hypothetical protein CLONEX_00658 [Clostridium nexile DSM 1787] gi|210152401|gb|EEA83407.1| hypothetical protein CLONEX_00658 [Clostridium nexile DSM 1787] Length = 230 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + + L GY V S N +A D +R+ F L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|254444308|ref|ZP_05057784.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258616|gb|EDY82924.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 612 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++ILLA+D+ R+ + L + +V NG A + E+ F L+L D+ MPE+DG Sbjct: 482 NRRILLADDNAINRKLGKRFLQQMKLDVTLACNGKQAVELASEQCFDLILMDLQMPELDG 541 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 I +R E++ K + I A A K A + L+KP + +L + + R Sbjct: 542 ITATQRIREINTAGKTIPIVALTANAFAEVREQCKEAGMNDFLTKPLRVNELASTLERWF 601 >gi|307152389|ref|YP_003887773.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] gi|306982617|gb|ADN14498.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 724 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L GY+V SC GA + L+L DI +P+MDG E+ Sbjct: 13 ILIVDDLPDNLRLLRDTLKGQGYKVRSCTTGAMVLRGAKAAVTDLILLDIKLPDMDGYEI 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R +A E + V+F++ A ++KPF + +++ V L+I Sbjct: 73 CRQLKADEQTASIPVIFLSALNNTFDKVQGFTFGGADYITKPFQVEEVLARVATHLSI 130 >gi|158422753|ref|YP_001524045.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329642|dbj|BAF87127.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 223 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L+ ALG+AGY V + +G + EP+ ++ DI +P++DGI Sbjct: 2 RLLVIEDDPDLNRQLVNALGEAGYAVDTAFDGEEGHFLGDSEPYDAVVLDIGLPKLDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E RRA P L + ++ D+ A ++KPFH+ ++ Sbjct: 62 VLEHWRRAGRRMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHMEEV 108 >gi|119953537|ref|YP_945747.1| acetoacetate metabolism regulatory protein AtoC [Borrelia turicatae 91E135] gi|119862308|gb|AAX18076.1| acetoacetate metabolism regulatory protein AtoC [Borrelia turicatae 91E135] Length = 456 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+D+ ++R + L + GY V + ++G A + ++ E +++D+ MP++ G E Sbjct: 3 KLLVADDEKNIREGIATYLEEEGYFVFTASDGKEALETIKNEKIDAIISDLRMPQISGEE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + + +P++ + +T V D+ L+KP L L+ + R L KN Sbjct: 63 LLKIVKDKNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALNGKN 121 >gi|153010000|ref|YP_001371215.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561888|gb|ABS15386.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 230 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L +A+ AGY V +G + EP+ ++ DI +P MDGI Sbjct: 2 RILIVEDDKDLNRQLSEAMAAAGYVVDRAYDGEEGHYLGDTEPYDAVVLDIGLPRMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGAD---DYVAKPFHIEEVLARLRALI 116 >gi|194364809|ref|YP_002027419.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194347613|gb|ACF50736.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 689 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 1/109 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 Q IL+ EDD+ +R + L GY+ + +A + ++ LL+TD+ +P ++G Sbjct: 565 QSILVVEDDEQVRMLVTVVLEDLGYQAQVVGDADAALPILTSDQCIDLLITDVGLPGLNG 624 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +LA A P L V+F+TG+A A S +++KPF L + Sbjct: 625 RQLAEIARHSRPTLPVLFMTGYAEKAQERSSFLDAGMAMIAKPFLLDEF 673 >gi|71734303|ref|YP_275627.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554856|gb|AAZ34067.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 690 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDEPSVRMLVAEVITGLGYNCLEAGDAQSGLQILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|86143810|ref|ZP_01062186.1| rteB, two-component system response regulator [Leeuwenhoekiella blandensis MED217] gi|85829853|gb|EAQ48315.1| rteB, two-component system response regulator [Leeuwenhoekiella blandensis MED217] Length = 451 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD + L L K GYEV+S AY + L++TD+ +P+ DG+ Sbjct: 3 KILLIEDDVAFCKMLETFLSKKGYEVISAFAAGEAYKILANHAVDLVITDVRLPDDDGLS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + E ++ V+ +TG+A V ++ +SKP +L+ V++ L Sbjct: 63 ILKHIKEDYNNIPVILMTGYAEVNKAVEAMKEGAFDYISKPVRPDELLKIVDKAL 117 >gi|84502459|ref|ZP_01000595.1| FixL-related histidine kinase [Oceanicola batsensis HTCC2597] gi|84389271|gb|EAQ02068.1| FixL-related histidine kinase [Oceanicola batsensis HTCC2597] Length = 509 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EM 59 +++LL EDD + R L G+E V+ NG +A++ ++ ++ TD++MP E+ Sbjct: 390 GRRVLLVEDDPRVLRLSETRLEALGFECVTATNGDAAWEILQTRRDIDVVFTDLMMPGEL 449 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G LA R + P +KV+ +GF+ L + A + +L KP+ DL L + Sbjct: 450 SGHALALRVAQEMPGVKVLITSGFSGDILGSKATA-EQFPMLRKPYRQADLAEAFRSLFS 508 >gi|116626864|ref|YP_829020.1| two-component response regulator CbrB [Candidatus Solibacter usitatus Ellin6076] gi|116230026|gb|ABJ88735.1| Two-component response regulator CbrB [Candidatus Solibacter usitatus Ellin6076] Length = 481 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M+Q+ IL+A+D+ +R L L G+ V S NG A + F +L+DI MP Sbjct: 2 MSQQPPHILIADDERSIRLMLETGLTLNGFRVTSARNGREALELATAGKFDAVLSDIYMP 61 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ G+EL D +L ++ +T ++ + ++ + + KPF + +V + RL Sbjct: 62 DLGGLELVDALRAADANLPIVLMTAQGSLQVAVEAVTRGASDFIGKPFDVSAVVELLKRL 121 Query: 118 L 118 L Sbjct: 122 L 122 >gi|328953525|ref|YP_004370859.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] gi|328453849|gb|AEB09678.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] Length = 132 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 ILL EDD+ + L G+ V+ G A D + R + L++ D +P+ DG Sbjct: 15 ILLVEDDEHFLSLEQELLEHLGFRVLGAARGDQALDIFRQRTQEIDLVIMDFYLPQKDGY 74 Query: 63 ELARRATELDPDLKVMFITG-FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L + P +KV+ +G F LN A + A V+ KPF + L E+ R+L Sbjct: 75 QLLHELRTIAPQVKVIVASGFFGQEELNKFQQA-RVAGVIHKPFRAKQLQEEILRVL 130 >gi|323705433|ref|ZP_08117008.1| response regulator receiver protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535335|gb|EGB25111.1| response regulator receiver protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 119 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI++ +D MR + + K V+ +G+ A +K +E L+L DI MPEMDGI Sbjct: 3 KIMIVDDAAFMRMMIKDIITKNNLGTVIEAEDGSVAVEKYNQEKPDLVLMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ + DP+ KV+ + A+ ++ + KPF ++ V ++L Sbjct: 63 QAVKQIVKKDPNAKVVMCSAMGQQAMVIEAIQAGAKDFIVKPFQPDRVIEAVKKML 118 >gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis R1] Length = 222 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ L +AL AGY +G AY EP+ ++ DI +P MDGI Sbjct: 2 RILIVEDDRDLNDQLAEALKNAGYVFDCVFDGEEAYFLGSTEPYDAVILDIGLPRMDGIR 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T ++ L D+ A + KPFH+ +++ + L+ Sbjct: 62 VVEKWRQEGYSMPVLMLTARDRWSDKVLGIDAGAD---DYVVKPFHIEEVIARLRALI 116 >gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus pseudintermedius ED99] Length = 241 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ +R+ L L + GY + ++G A D + +S +L D+++PEMD Sbjct: 2 MTNEILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLMLPEMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+A + EL D ++ +T + + KPF R++V V LL Sbjct: 62 GLEVAVKLREL-KDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALL 118 >gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] Length = 239 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TD++MPEMDG + Sbjct: 20 RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYD 79 Query: 64 LARRATELDPDLKVMFITGFA 84 L D+ V+ IT A Sbjct: 80 LVGSLRNARFDMPVLMITAKA 100 >gi|300868441|ref|ZP_07113062.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333575|emb|CBN58250.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 382 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D D + L GYE+ S NG SA ++ + P L+L D++MP MDG E Sbjct: 14 RILVVDDAPDNVLLVQTILEDEGYEISSAENGFSALAQIEQSPPDLVLLDVMMPGMDGYE 73 Query: 64 LAR--RATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + R E P + ++ IT +V D+ A + KP + +L+ V LL Sbjct: 74 VTQRIRQNEKLPFIPILLITAHDQPSVVQGLDTGAD---DFIRKPVEMDELLARVRSLLR 130 Query: 120 IKN 122 +K+ Sbjct: 131 LKH 133 >gi|298487925|ref|ZP_07005965.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157650|gb|EFH98730.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 690 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDEPSVRMLVAEVITGLGYNCLEAGDAQSGLQILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 229 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + QKIL+ +D+ D+ + L K GY+V NG ++ L++ DI+MP+MD Sbjct: 4 VKQKILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GIE R + P+ K F+ A + A N ++KP R LV+ +N + Sbjct: 64 GIEACRLMRAI-PEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAI 122 Query: 118 L 118 L Sbjct: 123 L 123 >gi|307151900|ref|YP_003887284.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982128|gb|ADN14009.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1049 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDG 61 Q IL+ +D MRR + L G+ V +C +G A++ ++ P +L++TD+ MP MDG Sbjct: 930 QMILVVDDAALMRRRIEATLTAYGHPVQTCADGLEAWNWLQYNPTPALMITDLEMPNMDG 989 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L +R + ++ I+ + N ++ L+K F +L+N+VN L + Sbjct: 990 FTLIQRLRNDGVTMPILVISSRLSEEWNREAQRLGADGFLTKGFSTNELINKVNSLTS 1047 >gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 235 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP MDGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 SMRRIRE 71 >gi|218779348|ref|YP_002430666.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760732|gb|ACL03198.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 846 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++L+ +D+ + L K GY+V S + A + E P F +++TD+ MP + Sbjct: 724 TERVLVVDDEPQIIEMNTLMLEKFGYQVTSFTDSREAIKRFLESPDDFDVIITDMAMPTL 783 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA++A + PD+ ++ TGF+ L KP + +L EV R L Sbjct: 784 SGDLLAQKARAVRPDIPIIICTGFSEKVQKLRELDLGGVTYLRKPISMNELAAEVKRSL 842 >gi|197116672|ref|YP_002137099.1| Cache/HAMP/PAS/PAC domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086032|gb|ACH37303.1| sensor histidine kinase response regulator, Cache, HAMP, PAS, PAC, PAS and PAC domain-containing protein [Geobacter bemidjiensis Bem] Length = 1113 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59 ++ ILL EDD +R + + L + GY V+ +G A R L++ D++MP+ Sbjct: 988 DETILLVEDDAVIREMVGELLEEFGYRVIKAVDGEDAVQTFRGAAAEVQLVILDVIMPKR 1047 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G E + + P +K +F++G+ A + +SKP + +L+ +V LL Sbjct: 1048 NGKEAYDEISRIRPGVKALFMSGYTADIITDSLIKGDPRHFVSKPISISELLGKVRDLL 1106 >gi|296160390|ref|ZP_06843207.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. Ch1-1] gi|295889371|gb|EFG69172.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. Ch1-1] Length = 450 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG++V+ + SA + + ++++DI +P G++ Sbjct: 7 QVLYIEDDELVRRASVQSLQLAGFDVIGHASVESAAKTIGADFSGVIVSDIRLPGASGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 67 LLAQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAL 121 >gi|253681551|ref|ZP_04862348.1| chemotaxis protein CheY [Clostridium botulinum D str. 1873] gi|253561263|gb|EES90715.1| chemotaxis protein CheY [Clostridium botulinum D str. 1873] Length = 119 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K GYE+V +NG A + + E ++ DI MP+MDGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNGYEIVGEASNGIKAVELYKSEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + DP K++ + + D+ + KPF ++ V + + Sbjct: 63 EAVKEIKAFDPCAKIIMCSAMGQQTMVMDAIKSGAKDFIVKPFQADRVLEAVKKAI 118 >gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A] gi|300908835|ref|ZP_07126298.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri] gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A] gi|300894242|gb|EFK87600.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] Length = 221 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + L A+ +GY+V NNG A ++ +E + +++ DI+MP G+E Sbjct: 2 RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLV 111 + +M +T A+ D +A L+KPF L++L+ Sbjct: 62 ALKEIRATGNRTYIMMLT---AMGEEDDKVTGLDAGADDYLTKPFSLKELL 109 >gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN] gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae] gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 +IL +DD +R L ++L GY V N+G A + V R+ P +L+L D++MP +DG+ Sbjct: 2 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVL-DVMMPRLDGL 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALL 116 >gi|147669545|ref|YP_001214363.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1] gi|146270493|gb|ABQ17485.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1] Length = 1262 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R + L + GY V C+ A D + + ++L DI MP + G+EL Sbjct: 1143 VLVIDDEAAIRALIRIVLTQDGYRVDECDVPQKAMDMISNNNYDVILLDIRMPGVSGLEL 1202 Query: 65 ARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 T P + +V+FITG + A + K ++KPF++ L N +N +L+ N Sbjct: 1203 YSEITAEWPQMAKRVIFITGDTSDASISNLMVAKGIPYINKPFNIATLKNTLNSILSRAN 1262 >gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1075 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 38/66 (57%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +D +D R + L K Y +V NG A + +++PF+L+L DI MP MDG Sbjct: 953 NDPILVVDDAEDNRMLVNVFLKKTRYTLVMAENGLEAVNAFKQQPFALVLMDIQMPLMDG 1012 Query: 62 IELARR 67 E R+ Sbjct: 1013 YEATRQ 1018 >gi|332535342|ref|ZP_08411138.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] gi|332035215|gb|EGI71723.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] Length = 241 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ EDD ++ + + L V + A K+ + P+ L+L DI +P+MDG Sbjct: 3 HEKILVVEDDREIGKLITTQLTSLNLHVDHVVSAELALKKIAKHPYGLILLDINLPQMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAA 85 + L R+ E P V+ +T ++ Sbjct: 63 LSLCRKIKEHYPTTSVILLTALSS 86 >gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 238 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +RR L L K GYE+ +G +A K E + L++ D+++P MDG+E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + R ++ +M A + N + +V + KPF R+++ V +L Sbjct: 67 VCTRLRQVKSTPILML------TAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIL 120 >gi|297623034|ref|YP_003704468.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164214|gb|ADI13925.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 223 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ EDD + + L + L G+ V +NG A + E F L++ D+ +P+MD Sbjct: 1 MNATILVVEDDLRLAKLLQQELSHDGHRVEVVHNGTDALVRADERAFDLVVLDLNLPDMD 60 Query: 61 GIELARR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+A R + + ++ +T V + + ++KPF +++L+ V+ Sbjct: 61 GVEVAERLRSGGEFGASILMLTARGDVKSRVEGLYAGASDYMTKPFSVQELLARVH 116 >gi|282898864|ref|ZP_06306851.1| Multi-sensor Hybrid Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281196391|gb|EFA71301.1| Multi-sensor Hybrid Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 636 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEM 59 + IL+ +D+ + +L Y V++ ++G A Y + R++ SL+LTDIVMP M Sbjct: 511 ETILVVDDEPAICEITKASLENYNYRVMTAHDGIEAIALYVEHRDQ-ISLILTDIVMPSM 569 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 DG+ R +++P LK++ F+ +A + NA N V L KPF L+ ++ Sbjct: 570 DGLTSIRTLKKINPHLKII---AFSGLAPSDKINAAYNMGVTAFLCKPFTATQLLQTISA 626 Query: 117 LLTIKN 122 + I N Sbjct: 627 VNGINN 632 >gi|317048976|ref|YP_004116624.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950593|gb|ADU70068.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 223 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KAL + G+ V +G +A ++ E ++L++ D+ +P M+G+E Sbjct: 2 RLLLVEDTVELAGWLQKALTQKGFAVDWVADGVAADHVLQSEEYALVVLDVTLPRMNGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T +A+A L+KPF L +L + LL Sbjct: 62 VLARLRRRGQQVPVLLLTARSALAQRVQGLNAGADDYLTKPFELDELEARLRALL 116 >gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 870 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+AEDD +R+ L L + Y+V +G A + ++ P+ +++ D+ MP +DG Sbjct: 750 RRLLIAEDDPTIRQVLGTMLARFEYQVEYAEDGHQAVQRWQQSPYDMIIMDVQMPGLDGF 809 Query: 63 ELAR--RATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R R EL+ L ++ +T A A +SKP R+ + ++ LL Sbjct: 810 EATRAIRQKELERGGRLPILAMTAHAMKEDEQRCIAAGMDDYISKPIDFRECLGKIGALL 869 >gi|254882381|ref|ZP_05255091.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254835174|gb|EET15483.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1344 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G + + +++++DI+MP MDGIEL Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQARIPNIIVSDIMMPVMDGIEL 1152 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 >gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 235 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP MDGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 SMRRIRE 71 >gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator [Acaryochloris marina MBIC11017] gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator, putative [Acaryochloris marina MBIC11017] Length = 636 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L AL K GY+V NG+ A R L+L DI MPEMDG + Sbjct: 23 ILIVDDTPHNLQILSTALTKQGYQVRGAANGSMALIGARNIMPDLILLDIKMPEMDGYTV 82 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + L D+ V+FI+ + ++KPF L +++ V LTI Sbjct: 83 CERLKSEALTQDIPVIFISALDDALDKVKAFTVGGVDYITKPFQLAEILARVENQLTI 140 >gi|156933148|ref|YP_001437064.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894] gi|156531402|gb|ABU76228.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ ++ +L KAL G+ V +G +A ++ E +++ + DI MP M G+E Sbjct: 2 RLLLAEDNRELAHWLEKALANTGFAVDCVGDGLAADHLLQNERYAVAVLDIEMPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R + V+ +T AVA L KPF L +L Sbjct: 62 VLSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSEL 108 >gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 709 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L ED+ D R L+ + + G EV + +G A +++ +L+ DI MPEMDG Sbjct: 591 RVLTVEDEQDTRELLVFMIEQYGAEVTAAASGREALKILKQSQPDILICDIAMPEMDGYM 650 Query: 64 LARRATELDP----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ +K + +T +A + + A + LSKP +LV + L+ Sbjct: 651 LIRQVRSWPKGQGGQIKAIALTAYAGESDQKQALAAGFQRHLSKPIDPEELVEAIASLI 709 >gi|331012367|gb|EGH92423.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 690 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDEPSVRMLVAEVITGLGYNCLEAGDAQSGLQILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|317037550|ref|XP_001398645.2| sensor histidine kinase/response regulator [Aspergillus niger CBS 513.88] Length = 1049 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 N +L+ +D+D + L L K G + +NG +A +K + +PF +L DI MP M Sbjct: 927 NLYVLIVDDNDINLKILATFLRKIGCSYETASNGLAALEKYKSSTKPFDYILMDISMPIM 986 Query: 60 DGIELARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 DGI + + E + P +M +TG A+ + + A L KP L DL + Sbjct: 987 DGIVSSSKIREYEEQHSLPRAAIMAVTGVASSEMQQQAFAAGIDDYLVKPLSLHDLKRIM 1046 Query: 115 N 115 N Sbjct: 1047 N 1047 >gi|310818912|ref|YP_003951270.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309391984|gb|ADO69443.1| Sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 476 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ +D +MR L AG+ V G A + LLLTD+ M MD Sbjct: 9 LRGRILVVDDQRNMRATTALLLRAAGHTVSEAATGEEALGLLAGGGVDLLLTDLKMEPMD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L +RA E+ P L+V+ +T F ++ ++ ++KPF ++ V R L Sbjct: 69 GLTLLKRALEVAPRLQVILMTAFGSIESAVEAMRLGAYDYVTKPFKESEVRYRVERAL 126 >gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 253 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+A+D+ +RR L L GY VV+ +G A + E L++ D++MP ++G Sbjct: 14 EKILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGY 73 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ E+ D+ ++ +T VA L+KPF ++L ++ +L Sbjct: 74 GVCQKIREIS-DIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAIL 128 >gi|266625194|ref|ZP_06118129.1| transcriptional regulatory protein [Clostridium hathewayi DSM 13479] gi|288862907|gb|EFC95205.1| transcriptional regulatory protein [Clostridium hathewayi DSM 13479] Length = 432 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+++A+D+ +R + I + G E+ C+NG AYD + +E L++TDI MP M+ Sbjct: 3 KLIIADDERIIRETISTIIDWSQYGIELAGLCSNGIEAYDMILDESPDLVITDIRMPGMN 62 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+EL R E D D + + ++G+ Sbjct: 63 GLELIGRICETDLDTQFILLSGYG 86 >gi|182678850|ref|YP_001832996.1| response regulator receiver protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634733|gb|ACB95507.1| response regulator receiver protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 250 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I + +DD D L + L G++V +G SA + E+ F L+ D+ +P M+ Sbjct: 1 MRKHIFIVDDDLDHAESLAEILELQGHDVELAQSGESAIARFAEKDFDLVFMDVKLPVMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E L P V +TG++ L ++ VL KPF DL++ V ++ Sbjct: 61 GVETFFAFRRLRPQAHVFMMTGYSVEQLVAEAIDNGALGVLYKPFSANDLLDAVAQV 117 >gi|162147357|ref|YP_001601818.1| transcriptional regulatory protein kdpE [Gluconacetobacter diazotrophicus PAl 5] gi|161785934|emb|CAP55510.1| putative transcriptional regulatory protein kdpE [Gluconacetobacter diazotrophicus PAl 5] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 14/115 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +RR L +L + V+ NG SA V+ E ++L D+ +P+MDGIE Sbjct: 5 RVLVVDDEPAIRRLLRTSLATQDWRVIEAGNGISALAAVKAEEIDVVLLDLGLPDMDGIE 64 Query: 64 LARRATELDPDLKVMFIT-------GFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + R+ + P L ++ ++ AA+ L D ++KPF + +LV Sbjct: 65 VIRQIRLVLPTLPIVVLSVRDDERGKVAALDLGADDY-------VTKPFGMAELV 112 >gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 235 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP MDGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 SMRRIRE 71 >gi|114799980|ref|YP_760980.1| cell division response regulator DivK [Hyphomonas neptunium ATCC 15444] gi|114740154|gb|ABI78279.1| cell division response regulator DivK [Hyphomonas neptunium ATCC 15444] Length = 131 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++ R LG G+ C +GA A + R+E L++ DI +PE+ G++ Sbjct: 9 KVLVVEDNELNMRLFCDLLGAYGFTTFQCRDGAKAVEIARKELPDLIIMDIQLPEVSGLD 68 Query: 64 LARRATELDPDLKVMFITGFA--AVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R L D KV I A A A+ D + A LSKP + + V L+ Sbjct: 69 ITRW---LKDDKKVAHIPVLAVTAFAMRADEQRVREAGCEGYLSKPIQIASFIRAVEALM 125 >gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51] gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ M+ + L GY+ ++ +G A + + + L+L DI+MP++D Sbjct: 2 MKKIILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIMMPKLD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + R + D + ++ +T +A ++KPF L+ LV ++N LL Sbjct: 62 GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALL 119 >gi|134300724|ref|YP_001114220.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] gi|134053424|gb|ABO51395.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] Length = 135 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 LLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD R+L++ L K +G+ V + NG A DKVR L+ D+ MP M G+E Sbjct: 7 VLIVDDQAGVRYLLEILVKESGHNVYTAQNGVEAVDKVRNVKPDLIFMDVRMPIMGGLEA 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L P+ +V+ +T ++A + + +SKPF + ++ N + + T Sbjct: 67 LGKIKSLAPNTEVVMMTAYSAEDTATIAMQKGDFMCMSKPFDVDEIKNLLGYITT 121 >gi|325954800|ref|YP_004238460.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] gi|323437418|gb|ADX67882.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 10/127 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KILL +D+ D+ F+ L K G+EV + NG K + L+L D++MP+MDG Sbjct: 3 HYKILLVDDEPDILEFVTYNLEKEGFEVETATNGLEGIKKAKVFKPHLILMDVMMPQMDG 62 Query: 62 IELARRATELD--PDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +E +LD D ++F++ F+ +A +A N ++ KP + LV+++ Sbjct: 63 VEACGELRKLDAFKDTLIVFLSARGEDFSQLAA---YDAGANDYIV-KPIKPKILVSKLK 118 Query: 116 RLLTIKN 122 LL IK Sbjct: 119 ALLKIKQ 125 >gi|301167370|emb|CBW26952.1| putative response regulator [Bacteriovorax marinus SJ] Length = 130 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+AEDD+D+ ++A G++V N+G A + + E ++++D MP + G Sbjct: 5 DYSILIAEDDEDLLELCLEAFQMKGFKVYGSNDGLRALEIFKSESIDIIISDSGMPGLSG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL-SKPFHLRDLVNEV 114 +EL R + + F+ + L + K A L SKPF L +++ V Sbjct: 65 LELLREVRSMAEKSPLFFLFS-GDIFLTDEQVKEKGATALISKPFGLDEILQTV 117 >gi|322420323|ref|YP_004199546.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126710|gb|ADW14270.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1126 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +L+AEDD +R + L K GY+VV +G K E L+L D++MP + Sbjct: 1002 ETVLIAEDDVSVRGLVDSLLRKYGYQVVLAVDGGDCVRKFLEHRGRIDLILMDVIMPGKN 1061 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E +DP ++V++ +G+ A + ++ ++ KP L+ +V +L Sbjct: 1062 GREAFDEIRRIDPSVRVLYSSGYTADFMKNRGVFEESVDLIMKPVQPMALLQKVREVLDR 1121 Query: 121 K 121 K Sbjct: 1122 K 1122 >gi|171057768|ref|YP_001790117.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775213|gb|ACB33352.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 316 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ +D D L AL ++GY V+ NGA A + + ++L D VMP MDG Sbjct: 7 NDLVLIVDDVPDNLAVLHDALDESGYTVLVATNGADAIARASQAQPHIVLLDAVMPGMDG 66 Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ARR L + ++F+TG + A ++KP R+++ + Sbjct: 67 FEVARRLKALPATAHIPIVFMTGLTETEHVLAAFAAGGCDYVTKPIRAREVLARI 121 >gi|251797216|ref|YP_003011947.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544842|gb|ACT01861.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 221 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL EDD+ + + L +AGY+V C NG AY + L++ DI++P M Sbjct: 1 MDIRILLVEDDEHIGNTVKTFLIEAGYKVDVCINGIEAYTNFYNHTYQLVILDIMLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G EL R + + + ++ +T AL+ D N K ++KPF ++ L+ V Sbjct: 61 GHELLREFRKRN-NTPILMMT-----ALSDDENQIKAFDAEADDYVTKPFKIQLLLKRVG 114 Query: 116 RLL 118 LL Sbjct: 115 ALL 117 >gi|169827134|ref|YP_001697292.1| chemotaxis protein cheY-like protein [Lysinibacillus sphaericus C3-41] gi|168991622|gb|ACA39162.1| Chemotaxis protein cheY-like protein [Lysinibacillus sphaericus C3-41] Length = 125 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++IL+ +D MR + L K G+EVV +G A +K E L+ DI MPEM Sbjct: 6 MSKRILIVDDAAFMRMMIKDILSKNGFEVVGEAADGLQAVEKYNELKPDLVTMDITMPEM 65 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI + DP V+ + A+ D+ + KPF ++ + + L Sbjct: 66 DGIAALKAIKGSDPSATVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIQKAL 124 >gi|167645461|ref|YP_001683124.1| response regulator receiver protein [Caulobacter sp. K31] gi|167347891|gb|ABZ70626.1| response regulator receiver protein [Caulobacter sp. K31] Length = 127 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ ED++ + L GYE + G A RE L+L DI +PE+ Sbjct: 6 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLQALSIAREHRPDLILMDIQLPEIS 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ + E D DL + + A A+ D + +SKP + ++ + RL Sbjct: 66 GLEVTKWLKE-DDDLSHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVSHFLDTIRRL 124 Query: 118 L 118 L Sbjct: 125 L 125 >gi|311746800|ref|ZP_07720585.1| sigma-54 dependent DNA-binding response regulator [Algoriphagus sp. PR1] gi|126578481|gb|EAZ82645.1| sigma-54 dependent DNA-binding response regulator [Algoriphagus sp. PR1] Length = 475 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 63/118 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D+ + L + L K GYEV + +G + + V+E + L+ D + +M+G + Sbjct: 3 KILVIDDNIDICQLLERFLTKKGYEVDTTISGKNGLEMVKETYYDLIFCDFKLRDMEGRD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + + P KV ITG+A V + + ++KP ++++ + R L +K Sbjct: 63 VLAKVRIISPGTKVAIITGYADVKIAVEVIKKGAFDYITKPLIPDEIISLIERALALK 120 >gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae] Length = 253 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 +IL +DD +R L ++L GY V N+G A + V R+ P +L+L D++MP +DG+ Sbjct: 27 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVL-DVMMPRLDGL 85 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 86 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALL 141 >gi|89901889|ref|YP_524360.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346626|gb|ABD70829.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 239 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++ ++L + L K Y V +NGA A ++ E ++L++ D+ +P++DG E Sbjct: 17 RILVVEDNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGKE 76 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR D V+ +T + ++KPF + +L + LL Sbjct: 77 VLRRLRARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLL 131 >gi|16126702|ref|NP_421266.1| polar differentiation response regulator [Caulobacter crescentus CB15] gi|13424012|gb|AAK24434.1| polar differentiation response regulator [Caulobacter crescentus CB15] Length = 130 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ ED++ + L GYE + G SA RE L+L DI +PE+ Sbjct: 6 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEIS 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ + E D DL + + A A+ D + +SKP + + + RL Sbjct: 66 GLEVTKWLKE-DDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRL 124 Query: 118 L 118 L Sbjct: 125 L 125 >gi|17231256|ref|NP_487804.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132898|dbj|BAB75463.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 369 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D D + L GYE+ ++G SA KV + P L+L D++MP MDG E Sbjct: 11 RILAVDDTRDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYE 70 Query: 64 LARRATELDPDLK---VMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR +P L ++ IT F ++V D A + KPF +L+ V LL Sbjct: 71 VTRRIRN-NPALSYIPILLITAFHESSVVEGLDVGAD---DFIRKPFDTDELLARVRSLL 126 Query: 119 TIKN 122 +K+ Sbjct: 127 RLKH 130 >gi|83942360|ref|ZP_00954821.1| nitrogen regulation protein NtrC [Sulfitobacter sp. EE-36] gi|83953580|ref|ZP_00962301.1| nitrogen regulation protein NtrC [Sulfitobacter sp. NAS-14.1] gi|83841525|gb|EAP80694.1| nitrogen regulation protein NtrC [Sulfitobacter sp. NAS-14.1] gi|83846453|gb|EAP84329.1| nitrogen regulation protein NtrC [Sulfitobacter sp. EE-36] Length = 457 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPDLMKRTARAL 118 >gi|117926099|ref|YP_866716.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117609855|gb|ABK45310.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 157 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 47/91 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL EDD + L L G+ V + ++G + F L+LTDI+MPE + Sbjct: 27 MEKNILLIEDDLITQTLLKDMLEDYGFFVFTASDGNEGTKMMEHNHFDLVLTDIIMPEKE 86 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD 91 G++L R P LKV+ ++ + + PD Sbjct: 87 GLQLIRETKWRWPHLKVIAMSTGGSFSGGPD 117 >gi|295677872|ref|YP_003606396.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437715|gb|ADG16885.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 247 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ IL+ +DD +R + + L G+ V + NG + ++++E +L++ DI+MPE+D Sbjct: 1 MNQTILIVDDDPVVRELVSEYLHGRGFNVATLENGLALQRRLQQERPALVVLDIMMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GI R D+ V+ +T A + L D L KPF +LV Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADD-------YLGKPFEPSELVAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 IRTVL 118 >gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + I++ +D+ +R L+ +L AGYEV + +G+ A + + L++ D+++P++D Sbjct: 5 IEATIVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVMLPDID 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + RR + D V+F+T ++KPF L ++V + +L Sbjct: 65 GFTVTRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAIL 122 >gi|163851076|ref|YP_001639119.1| histidine kinase [Methylobacterium extorquens PA1] gi|218529906|ref|YP_002420722.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|240138210|ref|YP_002962682.1| putative sensor hybrid histidine kinase with PAS/PAC and response receiver regulator receiver domains [Methylobacterium extorquens AM1] gi|254560770|ref|YP_003067865.1| sensor hybrid histidine kinase with PAS/PAC and response receiver regulator receiver domains [Methylobacterium extorquens DM4] gi|163662681|gb|ABY30048.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|218522209|gb|ACK82794.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|240008179|gb|ACS39405.1| putative sensor hybrid histidine kinase with PAS/PAC and response receiver regulator receiver domains [Methylobacterium extorquens AM1] gi|254268048|emb|CAX23919.1| putative sensor hybrid histidine kinase with PAS/PAC and response receiver regulator receiver domains [Methylobacterium extorquens DM4] Length = 541 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 + +L+ +D D+ L GY+V + +A D + E LL TD++MP M Sbjct: 416 TETVLVVDDRPDVAETAGIILEDFGYKVTVVDGPKAALDILDGEGRIDLLFTDLIMPGGM 475 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A E P +KV+ TG+A ++ ++++KP+ +L V R++ Sbjct: 476 NGVMLARAARERQPKIKVLLTTGYAEASMERTDAGGTEFEIINKPYKRMELARRVRRVI 534 >gi|194366938|ref|YP_002029548.1| two component sigma54 specific Fis family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349742|gb|ACF52865.1| two component, sigma54 specific, transcriptional regulator, Fis family [Stenotrophomonas maltophilia R551-3] Length = 457 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + L+ +D+ D+R L+ LG+ G + + N A A + + P+ L +TD+ +P+ +G Sbjct: 4 TRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL + P V IT F ++ L ++ +SKP + L V L + Sbjct: 64 IELVSEIAQHYPRTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|86610178|ref|YP_478940.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558720|gb|ABD03677.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 923 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +L+ ED ++RRFL L +AG+ V +G A + + R P ++TDI MP +DG Sbjct: 792 LLVVEDSVNVRRFLAMTLERAGFRVEQARDGQEALEHLQRGIPIRAVITDIEMPRLDGFG 851 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RA L L V+ +T + + + LSKPF ++L+ ++ +LL Sbjct: 852 LLAQIRAHPLYDQLPVVMLTSRSGEKHRQLAQRLGASAYLSKPFQEQELIQKLRQLL 908 >gi|82778820|ref|YP_405169.1| transcriptional regulatory protein ZraR [Shigella dysenteriae Sd197] gi|309783961|ref|ZP_07678606.1| transcriptional regulatory protein zraR [Shigella dysenteriae 1617] gi|81242968|gb|ABB63678.1| sensor HydH response regulator of hydrogenase 3 activity [Shigella dysenteriae Sd197] gi|308928332|gb|EFP73794.1| transcriptional regulatory protein zraR [Shigella dysenteriae 1617] Length = 441 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD L L GY V N+ A ++VRE+ F L+L D+ M EMDG Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSERQALEQVREQVFDLVLCDVRMAEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 I + L P + V+ +T +++V Sbjct: 65 IATLKEIKALKPAIPVLIMTAYSSV 89 >gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GY+V +GA A + ++ P L+L D+ +P++DG+E Sbjct: 3 RVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDNP-DLVLLDLGLPKVDGLE 61 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 62 VCRRLRAEGRSIPVLILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 116 >gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.] Length = 1266 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ + + L +AG V NNG A D VRE F LL DI MP MDG E Sbjct: 919 RVLVAEDNITNQEIALAILEEAGLVVKIVNNGKEAVDAVRESQFDALLMDIQMPVMDGYE 978 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD 91 A R D + K + I A A+ D Sbjct: 979 -ATRQIRKDAEFKDLPIIAMTAHAMKGD 1005 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY-----DKVREEPFSLLLTDIVMPEM 59 +L+ +D D + + K L G++V S ++ ++ D+ RE P L++ D +MP + Sbjct: 771 VLVVDDCKDSQNIMEKMLESFGFKVESISSAQASLQRLREDETRENPIDLVMMDWLMPGL 830 Query: 60 DGIE 63 DGIE Sbjct: 831 DGIE 834 >gi|307941768|ref|ZP_07657123.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Roseibium sp. TrichSKD4] gi|307775376|gb|EFO34582.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Roseibium sp. TrichSKD4] Length = 461 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 53/101 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD DMR L + +G AG+ + A K+ +++D+++ DG++L Sbjct: 7 VLIVDDDPDMRAALRQWMGLAGFRPIEVETARQALSKLSSGFEGCVVSDVMLKGEDGLQL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 R+ +++D ++ V+ ITG V + D+ + KPF Sbjct: 67 MRQVSDIDAEIPVILITGHGDVPMAVDAMRSGAYDFVEKPF 107 >gi|289628041|ref|ZP_06460995.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648814|ref|ZP_06480157.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869110|gb|EGH03819.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 689 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDEPSVRMLVAEVITGLGYNCLEAGDAQSGLQILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|289624094|ref|ZP_06457048.1| response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648586|ref|ZP_06479929.1| response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869883|gb|EGH04592.1| response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 394 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|209522684|ref|ZP_03271242.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496733|gb|EDZ97030.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 398 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + R L + L + GY+V NG A V E L+L DI+MPE+DG ++ Sbjct: 13 ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAETPDLILLDIMMPELDGYQV 72 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 A+ + DP ++ ++F++ + + ++KPFH+++++ V LTI Sbjct: 73 AKYLKD-DPTTREIPIIFLSALSDTMDKVLAFDVGGVDYITKPFHVQEVLARVRTQLTI 130 >gi|162450211|ref|YP_001612578.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161160793|emb|CAN92098.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 939 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D + R L+K L G+E +G E F L++TD+ MPE+DG Sbjct: 716 RRRVLVVDDQPENRAVLVKMLQSVGFETSEATDGKEGLAAASEREFDLVITDLAMPELDG 775 Query: 62 ---IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 I+L R+A PD + I +A D + A L KP L +L +++ Sbjct: 776 WEMIQLLRKA----PDRAGLKIFASSASVFLSDQDKSLAAGADDFLPKPLQLEELYDKIQ 831 Query: 116 RLLTI 120 R L + Sbjct: 832 RHLGL 836 >gi|153805771|ref|ZP_01958439.1| hypothetical protein BACCAC_00007 [Bacteroides caccae ATCC 43185] gi|149130448|gb|EDM21654.1| hypothetical protein BACCAC_00007 [Bacteroides caccae ATCC 43185] Length = 1338 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ DM F+++ L ++ Y VV+ N+G A + + SL+++D+VMP MDG EL Sbjct: 1094 VLVADDNPDMLSFIVRQL-ESNYVVVTANDGVEALKVLDNQEVSLVVSDVVMPRMDGFEL 1152 Query: 65 AR 66 + Sbjct: 1153 CK 1154 >gi|146341430|ref|YP_001206478.1| putative response regulator in two-component regulatory system (CheY-like protein) [Bradyrhizobium sp. ORS278] gi|146194236|emb|CAL78258.1| putative response regulator in two-component regulatory system (CheY-like protein) [Bradyrhizobium sp. ORS278] Length = 121 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED++ + L GY+ ++G A D VR L+L DI +P++ Sbjct: 1 MGKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSSGVEALDIVRRTRPDLILMDIQLPQVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ + + DPDL+ + + A A+ D + LSKP + + V R Sbjct: 61 GLEVTKWIKD-DPDLRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRF 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|115374417|ref|ZP_01461700.1| serine/threonine-protein kinase Pkn1 [Stigmatella aurantiaca DW4/3-1] gi|310824435|ref|YP_003956793.1| serine/threonine protein kinase/response regulator/adenylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|115368619|gb|EAU67571.1| serine/threonine-protein kinase Pkn1 [Stigmatella aurantiaca DW4/3-1] gi|309397507|gb|ADO74966.1| Serine/threonine protein kinase/response regulator/adenylate cyclase [Stigmatella aurantiaca DW4/3-1] Length = 679 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 7/121 (5%) Query: 4 KILLAEDDDD----MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPE 58 KIL+ +D+ D M++ K + A YE++ NG A +K+R+ P + ++LTD+ MP+ Sbjct: 301 KILIVDDEPDTILVMQQRFRKQIESAAYELIFATNGEEALEKLRQHPDTDVVLTDLNMPK 360 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRL 117 MDG+ R E++ KV+ ++ ++ ++ N + + A L KP +DL + + + Sbjct: 361 MDGLSFLARVGEVNSLAKVIIVSAYSDMS-NIRTAMNRGAFDFLVKPVSFQDLKSTLEKT 419 Query: 118 L 118 L Sbjct: 420 L 420 >gi|86140417|ref|ZP_01058976.1| histidine kinase response regulator hybrid protein [Leeuwenhoekiella blandensis MED217] gi|85832359|gb|EAQ50808.1| histidine kinase response regulator hybrid protein [Leeuwenhoekiella blandensis MED217] Length = 736 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ ED+ + K L K E +NG A +KVR EPF L+L DI MP + GI Sbjct: 614 RKLLVVEDNKINQMITRKILEKNEMECEVADNGEIAIEKVRFEPFDLVLMDIHMPGISGI 673 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E ++ E + DL ++ +T D ++ KP+ + + +++ L KN Sbjct: 674 EATQKIREFNKDLPILALTAVTIDENIDDFYLAGFNDIIPKPYKVEEFFFKIHNALKRKN 733 >gi|117925337|ref|YP_865954.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117609093|gb|ABK44548.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 157 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 47/91 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL EDD + L L G+ V + ++G + F L+LTDI+MPE + Sbjct: 27 MEKNILLIEDDLITQTLLKDMLEDYGFFVFTASDGNEGTKMMEHNHFDLVLTDIIMPEKE 86 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD 91 G++L R P LKV+ ++ + + PD Sbjct: 87 GLQLIRETKWRWPHLKVIAMSTGGSFSGGPD 117 >gi|332360668|gb|EGJ38477.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 240 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 26 GYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 G +V++ NG A+ K +E P ++LTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 23 GMQVIAQAENGIEAWQKFQENPADIMLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGY 81 >gi|330973587|gb|EGH73653.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 691 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLVVDDEPSVRMLVAEVISGLGYNCLEAADAQSGLQILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|325300130|ref|YP_004260047.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319683|gb|ADY37574.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1442 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+D++R L L Y V++ NG + +D R+E ++LTD++MP MDG+E+ Sbjct: 1181 ILIVEDNDELRTSLADIL-SVRYRVLTAVNGEAGWDMARKELPDMILTDVMMPVMDGLEM 1239 Query: 65 ARR 67 R+ Sbjct: 1240 VRQ 1242 >gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] Length = 235 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LG+AG+EV+ NG + + ++ L++ DI+MP DG Sbjct: 3 NKRILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTLQHTTPDLIILDIMMPGEDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ + D + ++ +T A ++K F R+L+ + +L Sbjct: 63 FCLCRQLRQ-DSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTIL 118 >gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 220 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD + L++AL GY V + NGA A ++ +SL++ D+ +P+ DG + Sbjct: 2 KLLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGLPDRDGRQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ + DL V+ +T A+ D L KPF L +L V L+ Sbjct: 62 LLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALI 116 >gi|255034903|ref|YP_003085524.1| adenylate/guanylate cyclase [Dyadobacter fermentans DSM 18053] gi|254947659|gb|ACT92359.1| adenylate/guanylate cyclase [Dyadobacter fermentans DSM 18053] Length = 348 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 9/117 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKA-----LGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDI 54 M KIL+ +D+ D++ LIK + + YE V NG A + + E P ++L+DI Sbjct: 1 MKAKILVVDDEADLQ-LLIKQKFRRQIREQQYEFVFAENGLQALEVLAEHPDVDMVLSDI 59 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDL 110 MPEMDG+ L R E+ P LK + ++ + + N + + A L+KP RDL Sbjct: 60 NMPEMDGLTLLVRLGEMSPLLKSVIVSAYGDMD-NIRTAMNRGAFDFLTKPIDFRDL 115 >gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 252 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G++V + G A +E +++ DI++P+ DG+E Sbjct: 22 RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLE 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P + V+F+T AV ++KPF L ++V + LL Sbjct: 82 VMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALL 136 >gi|254460399|ref|ZP_05073815.1| nitrogen regulation protein [Rhodobacterales bacterium HTCC2083] gi|206676988|gb|EDZ41475.1| nitrogen regulation protein [Rhodobacteraceae bacterium HTCC2083] Length = 455 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG V + ++ + + E ++++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCRVHATSSLTTLMRWIAEGRGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ + E P + V+ I+ + +N L KPF L DL+ R L Sbjct: 61 GLEMLPKIQEDRPGMPVIVISAQNTIMTAIKANEAGAYDYLPKPFDLPDLMKRTARAL 118 >gi|218778504|ref|YP_002429822.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] gi|218759888|gb|ACL02354.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] Length = 505 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 Y +V+ ++G SA D +E L TD+ MP MDGI L++R E+D + ++ +T + ++ Sbjct: 32 YSIVTASDGPSALDVFSKEQPDFLFTDLAMPGMDGIALSKRILEMDNTIPIVVMTAYPSM 91 Query: 87 ALNPDSNAPKNAKVLSKPFHLRDL 110 + + + KPF +RD+ Sbjct: 92 ESTIMALQTGVSDFIVKPFKIRDV 115 >gi|126439878|ref|YP_001057797.1| response regulator/HD domain-containing protein [Burkholderia pseudomallei 668] gi|126219371|gb|ABN82877.1| response regulator/HD domain protein [Burkholderia pseudomallei 668] Length = 481 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV +GA+A D + L+++D+ MP M G E Sbjct: 44 ILIVDDEPSILSALKRLLRTARYQVVKAESGAAALDVLAVGEVDLIISDMRMPCMTGAEF 103 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 104 LARAQTLHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVRQAL 158 >gi|89901508|ref|YP_523979.1| response regulator receiver domain-containing protein [Rhodoferax ferrireducens T118] gi|89346245|gb|ABD70448.1| response regulator receiver domain protein [Rhodoferax ferrireducens T118] Length = 242 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 20 KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 + L GY V + N A ++RE+ F ++ TDI MP MDG+ELA P V+ Sbjct: 22 RVLSDKGYIVTTAENAHEALKQIREQEFDVVFTDIKMPGMDGVELAEHVKASRPWTPVVI 81 Query: 80 ITGF 83 ITG+ Sbjct: 82 ITGY 85 >gi|66046761|ref|YP_236602.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63257468|gb|AAY38564.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 691 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLVVDDEPSVRMLVAEVISGLGYNCLEAADAQSGLQILQSDTRIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKTSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|27380235|ref|NP_771764.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27353389|dbj|BAC50389.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 121 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED++ + L GY+ +NG A D VR+ L+L DI +P++ Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTTGTSNGYEALDLVRKMRPDLVLMDIQLPQVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ R + DP+L+ + + A A+ D + LSKP + + V R Sbjct: 61 GLEVTRWIKD-DPELRSIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRF 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|127514434|ref|YP_001095631.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126639729|gb|ABO25372.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 198 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILLAED +R L L G +EV+ +G A ++++ F LLLTDI MP + G+ Sbjct: 2 KILLAEDQAMVRGALAALLTLEGDFEVIQACDGDQALSLLKQQEFDLLLTDIEMPGLSGL 61 Query: 63 ELARRATELDPDLKVMFITGFA 84 ELA+ +KV+ +T F Sbjct: 62 ELAQWCQNQAAPIKVIILTTFG 83 >gi|315919295|ref|ZP_07915535.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693170|gb|EFS30005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1347 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED++++ + + L K Y V++ NG A + ++E ++++D++MPEMDG+E Sbjct: 1096 RLLLVEDNEELLYLMRRILSKH-YYVLTAKNGIEALEVMKEYEADIIVSDVMMPEMDGLE 1154 Query: 64 LARRAT-ELDPD-LKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R LD + ++ +T + + NA NA + SKPF L+ L ++ L Sbjct: 1155 LCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYI-SKPFELKVLEARIDNFLAE 1213 Query: 121 K 121 K Sbjct: 1214 K 1214 >gi|307319052|ref|ZP_07598482.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|306895159|gb|EFN25915.1| response regulator receiver protein [Sinorhizobium meliloti AK83] Length = 131 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM-DG 61 ILLAED+ + AL +AG+ V++ +G A + K E + ++TDI E G Sbjct: 6 ILLAEDETLLLLDFEDALKEAGFVVLAVTSGKKAVEHLKAAESSIAGIVTDIRFAESPSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD--SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++AR A E+DP++ V++I+G +A PD S + ++ KPF + L+ +++LL Sbjct: 66 WDVARIAREIDPEMPVIYISGDSA----PDWASQGVPKSIMIEKPFVMSQLIVAISQLL 120 >gi|260170975|ref|ZP_05757387.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1361 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED++++ + + L K Y V++ NG A + ++E ++++D++MPEMDG+E Sbjct: 1110 RLLLVEDNEELLYLMRRILSKH-YYVLTAKNGIEALEVMKEYEADIIVSDVMMPEMDGLE 1168 Query: 64 LARRAT-ELDPD-LKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R LD + ++ +T + + NA NA + SKPF L+ L ++ L Sbjct: 1169 LCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYI-SKPFELKVLEARIDNFLAE 1227 Query: 121 K 121 K Sbjct: 1228 K 1228 >gi|257056585|ref|YP_003134417.1| response regulator with putative antiterminator output domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586457|gb|ACU97590.1| response regulator with putative antiterminator output domain protein [Saccharomonospora viridis DSM 43017] Length = 204 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++L+AED+ +R L++ L + GYEVV +G A E L++ D+ MP++D Sbjct: 16 QRRVLVAEDEALIRLDLVEMLREEGYEVVGEAGDGEEAVKLASELKPDLVILDVKMPKLD 75 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 GIE A + T D V+ +T F+ L + L KPF RDLV Sbjct: 76 GIEAAAKITG-DRIAPVVILTAFSQRELVERAREAGTMAYLVKPFAKRDLV 125 >gi|224372199|ref|YP_002606571.1| chemotaxis response regulator [Nautilia profundicola AmH] gi|223588330|gb|ACM92066.1| chemotaxis response regulator [Nautilia profundicola AmH] Length = 125 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 4/82 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 KIL+ +D MRR ++ L + GY +VV +G A++ ++ P +++TD MP M+G Sbjct: 2 KILVVDDSSTMRRIIVNTLARLGYKDVVQAADGVEAWEVMQANPDIGVVITDWNMPNMNG 61 Query: 62 IELAR--RATELDPDLKVMFIT 81 +EL + RA E D+ ++ +T Sbjct: 62 LELVKKIRAEEKYKDIPIIMVT 83 >gi|218439149|ref|YP_002377478.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171877|gb|ACK70610.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 384 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L K GY V NG A V P ++L DI MP M+G ++ Sbjct: 8 ILVVDDTPDNLRLLAAMLSKKGYTVRKALNGQIAIATVHSVPPDIILLDINMPNMNGYQV 67 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +A E D+ ++FI+ V + ++KPF +++ + LTI Sbjct: 68 CQTLKADEQTKDIPIIFISALDDVIDKVKAFNMGGVDYITKPFQGEEVIARIENQLTI 125 >gi|223938005|ref|ZP_03629904.1| integral membrane sensor hybrid histidine kinase [bacterium Ellin514] gi|223893406|gb|EEF59868.1| integral membrane sensor hybrid histidine kinase [bacterium Ellin514] Length = 754 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++L+ +D+D + + + +AL GY+V +G +A + + L L D MP ++ Sbjct: 632 LGKRVLVVDDEDSILQMIKEALTLNGYQVDVARDGETALSCMANCRYDLALCDWKMPGLN 691 Query: 61 GIELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + E +P++ +++FITG + ++ LSKPF L + + R+L Sbjct: 692 GQEVYEKLREKNPEMSRRLIFITGDVVNEKAQEYLKSRDKICLSKPFTLAEFRAAITRVL 751 Query: 119 T 119 T Sbjct: 752 T 752 >gi|167764826|ref|ZP_02436947.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183] gi|167697495|gb|EDS14074.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183] Length = 1329 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED++++RR+L L A + ++ NG A + ++E L+L+D++MP MDG++L Sbjct: 1084 ILIVEDNEELRRYLFNGL-SAQFNLIEAENGQKALEVLKENDVDLILSDVMMPVMDGVKL 1142 Query: 65 ARRATE 70 + + Sbjct: 1143 CKSVKQ 1148 >gi|153953984|ref|YP_001394749.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346865|gb|EDK33401.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++I L ED+ ++ L K L GY+V + +G+ A ++++ P L + DI++P++D Sbjct: 1 MAKRIYLVEDERNLNVLLEKYLRNEGYDVTTFFDGSCAKKRIKDMP-DLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + + + + V+F++ + L D LSKPF R+LV Sbjct: 60 GYELIKYIKQNNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELVIR 112 Query: 114 VNRLL 118 N+L+ Sbjct: 113 TNKLM 117 >gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 435 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + R L L + GYE+ NG A V+ +P L+L DI MP++DG ++ Sbjct: 13 ILIVDDTPNNLRVLSSILQEQGYEIRKAVNGKMAIRSVQADPPDLVLLDIKMPDLDGYQV 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +A E D+ V+F++ V + ++KPF + +++ V LT++ Sbjct: 73 CSQLKAIEATRDIPVIFLSALDDVFNKVLAFQVGGVDYITKPFQVEEVLVRVKTHLTLR 131 >gi|219847198|ref|YP_002461631.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541457|gb|ACL23195.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 870 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGIE 63 L+A+DD +R L + L +AG + +G SA + E P ++ L D+ MP M+G+E Sbjct: 746 LIADDDVAVRTTLRRILERAGMVTIEAGDGRSALTLLTESTIPITIALVDLAMPGMNGLE 805 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + L V+ ++G A + + + L KP+ DL+ ++++L+ Sbjct: 806 LLDAIRRHELQLPVLLMSGNAEQVVTGKLPSDRYTDFLPKPYRSHDLLTKISQLI 860 >gi|121596367|ref|YP_988263.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120608447|gb|ABM44187.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 223 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 56/106 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ +R L++A+ AG+ V + ++GA A+ E F ++ D+ +P +DG+ Sbjct: 2 RILVVEDEPTLRDQLVQAIAAAGHTVEAASDGAQAHYLGEVEDFDAVVLDLGLPVLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 + RR ++ V+ +T AA L+KPFH+ + Sbjct: 62 VLRRWRAAGRNMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEE 107 >gi|221235483|ref|YP_002517920.1| response regulator receiver protein divK [Caulobacter crescentus NA1000] gi|1086465|gb|AAA82214.1| cell division response regulator DivK [Caulobacter crescentus CB15] gi|220964656|gb|ACL96012.1| response regulator receiver protein divK [Caulobacter crescentus NA1000] Length = 125 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ ED++ + L GYE + G SA RE L+L DI +PE+ Sbjct: 1 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ + E D DL + + A A+ D + +SKP + + + RL Sbjct: 61 GLEVTKWLKE-DDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 1132 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D +D R L +E++ NG A D+++ F ++ D+ MPEMDG Sbjct: 1012 KILIADDTEDNRTLFTHYLKNEPFEIIEAENGLQAIDQIKSGEFDIVFMDVQMPEMDGYA 1071 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R E + P + ++ +T A S ++KPF L+ +N+ Sbjct: 1072 ATDRIREWEKESHKPPVPIIALTAHALAEDRQKSLRAGCNDHIAKPFKKDTLLGVINK 1129 >gi|116624498|ref|YP_826654.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116227660|gb|ABJ86369.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 143 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L + AGY+V +G A E F +L+D+ MP + G EL Sbjct: 24 ILIVDDERGIRSLLELSFADAGYDVRIAADGNQAMQLCGIESFDAVLSDVRMPGISGHEL 83 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 AR P + +TG+ D +++KPF +D+V+ V+ L Sbjct: 84 ARWLARRHPATRFFLMTGWDTGC--EDCPIAGRCSIVAKPFRPKDVVSRVDAALA 136 >gi|260777377|ref|ZP_05886271.1| sensory box histidine kinase/response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260607043|gb|EEX33317.1| sensory box histidine kinase/response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 233 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ ED++ R+ LI L K+GYE ++S +G SA +K+ L++TDI MP ++G+E Sbjct: 11 ILVVEDNNLSRKALIGMLFKSGYENILSAPDGRSAIEKIEHNHIDLIITDINMPHINGLE 70 Query: 64 LARRA----TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + T+ P+ V+ +T + + L KP ++D ++ + +T Sbjct: 71 LIKSVRMGQTKAVPETSVIAVTALSDTETISTCMRFEIDAFLPKPITVKDAREQIEQAVT 130 >gi|256828133|ref|YP_003156861.1| Fis family two component sigma5-4 specific transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577309|gb|ACU88445.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfomicrobium baculatum DSM 4028] Length = 444 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D + + L AGY V +C + A + E P L++TD MP +G+EL Sbjct: 8 ILAVDDSPATLEVISRNLTGAGYVVHTCGSVEEAGAFLDETPVDLIITDYKMPRANGLEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + D ++M ITG+ ++ ++ + L+KPF +L+ V R+L Sbjct: 68 IKYVRDNFKDTEIMMITGYPTISGAVEAMRDGAGEYLAKPFTGEELLAVVRRIL 121 >gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] Length = 1057 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 44/80 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++L +D D L+ + K GYEV+ +NGA A RE ++L D+ MP MDG+E Sbjct: 942 VVLVAEDTDSNFLLVSLILKKGYEVLRAHNGAEAVRMCREFAPDVVLMDMKMPVMDGLEA 1001 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + ++ +T +A Sbjct: 1002 TRQIREAGSSVPIIAVTAYA 1021 >gi|154502907|ref|ZP_02039967.1| hypothetical protein RUMGNA_00727 [Ruminococcus gnavus ATCC 29149] gi|153796446|gb|EDN78866.1| hypothetical protein RUMGNA_00727 [Ruminococcus gnavus ATCC 29149] Length = 232 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD + R L L GYEV+S N SA K+RE F + L DI +P+ G+ Sbjct: 5 KKILIVEDDQLLNRTLAYNLTSDGYEVISVFNFDSAVRKLRENEFDVALLDINLPDGSGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 +L ++FIT A + +S+ K +V ++KPF + L +V Sbjct: 65 DLCEEIRNRGQHTYIIFIT-----ANDKESDMLKGYEVGGADYVTKPFSVTVLCKKV 116 >gi|78486516|ref|YP_392441.1| response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] gi|78364802|gb|ABB42767.1| response regulator receiver modulated metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] Length = 348 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N IL+ +D + + + L + GY+ +G A E F L+L DI+MP MD Sbjct: 3 LNFHILIVDDISENIQVAMSLLREEGYQFSFATDGEEALRLADENDFDLILLDIMMPRMD 62 Query: 61 GIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNR 116 G E RR A D+ ++F+T A V ++ S K V ++KPFH +L+ V Sbjct: 63 GYETCRRLKANARTQDIPIIFLT--AKVDIDAISKGFKLGAVDYITKPFHGEELIARVKT 120 Query: 117 LLTI 120 L + Sbjct: 121 HLEL 124 >gi|118579149|ref|YP_900399.1| two component sigma54 specific Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501859|gb|ABK98341.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 456 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D++D+R L L G+ V +G A + V E ++L DI MP +D Sbjct: 1 MSKLILVVDDENDIRTSLTGILEDEGFLVSCAASGVEALENVCHEIPDIVLLDIWMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E + +L P L V+ I+G + + + KP L ++ VN L Sbjct: 61 GLETLEKLKQLFPHLTVIMISGHGTIETAVRATKLGAFDFIEKPLSLDKVLITVNNAL 118 >gi|330908387|gb|EGH36906.1| two-component response regulator [Escherichia coli AA86] Length = 452 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 18/136 (13%) Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 MN K I+ ED DD+R + L AGY V+SC + + ++ + ++LTD+ Sbjct: 1 MNNKFSEITIVYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSIPLIQSQANIIILTDVR 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPD-------------SNAPKNAKVLS 102 +P + G+EL E+D + + ITG V + D S++ K +++ Sbjct: 61 LPGISGLELLSYINEMDSKIPFILITGHGDVEMAVDAMRNGAFDFIEKPSSSDKLLSIIA 120 Query: 103 KPFHLRDLVNEVNRLL 118 + R LV E +LL Sbjct: 121 RAVEKRRLVLENQQLL 136 >gi|331650074|ref|ZP_08351147.1| putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein [Escherichia coli M605] gi|331041019|gb|EGI13176.1| putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein [Escherichia coli M605] Length = 452 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 18/136 (13%) Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 MN K I+ ED DD+R + L AGY V+SC + + ++ + ++LTD+ Sbjct: 1 MNNKFSEITIVYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSIPLIQSQANIIILTDVR 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPD-------------SNAPKNAKVLS 102 +P + G+EL E+D + + ITG V + D S++ K +++ Sbjct: 61 LPGISGLELLSYINEMDSKIPFILITGHGDVEMAVDAMRNGAFDFIEKPSSSDKLLSIIA 120 Query: 103 KPFHLRDLVNEVNRLL 118 + R LV E +LL Sbjct: 121 RAVEKRRLVLENQQLL 136 >gi|296445710|ref|ZP_06887664.1| response regulator receiver protein [Methylosinus trichosporium OB3b] gi|296256813|gb|EFH03886.1| response regulator receiver protein [Methylosinus trichosporium OB3b] Length = 121 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L +D +R+ + L AGY V+ +G A R E ++++TD+ MP MDG+ Sbjct: 2 KKVLTVDDSVSVRQMVRAVLTVAGYSVMEAKDGREALGAARSEQANMVITDLNMPVMDGL 61 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L + ++F++ + A+ ++ A ++KPF L+ V +L+ Sbjct: 62 TFIRELRKLPAYSGVPIVFLSTESDTAVKQEAKAAGATGWITKPFSQDQLLAVVKKLI 119 >gi|258592528|emb|CBE68837.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 781 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 +IL+ +D++ +R + L GYEVV+ ++G A D R+ L++ D+VMP + G Sbjct: 655 RILVVDDEEVVRTSSAELLRHMGYEVVTASDGQEAVDYYRQFGRQIDLIIIDMVMPRLSG 714 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R +P++K + TGF+ + L KP+ L+NE++ ++ Sbjct: 715 ADCFRALKAFEPNVKAILTTGFSLNEVAQQLLDEGMVGFLQKPY----LINELSEVI 767 >gi|270293601|ref|ZP_06199803.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275068|gb|EFA20928.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 54/116 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL A+DD L + L K GYEV NG A ++ L+L DI MP +G E Sbjct: 5 KILFADDDLKYSMLLKRFLEKEGYEVTYAGNGKIALEQFPLIKPDLVLLDINMPGYNGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +A R E+D + + F++ + A K L+KPF+ +L + T Sbjct: 65 VAERIREMDKHVLIFFLSDRSDKADRLQGFQLKANDYLAKPFYPEELTARIRERFT 120 >gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 234 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD+ + L+ + V +G A +++E+ +++ DI+MP +DG E+ Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RRA + D+ ++F++ + L D + KPFH+R+L+ V Sbjct: 66 CRRARQF-TDIPIIFLSAKDDEADRLVGLHLGADD-------YVVKPFHVRELIARVKSF 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus 16] gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus 16] Length = 235 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + ++++ L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHTPDLIILDIMMPGDDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ D + ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRR-DSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTIL 118 >gi|254488315|ref|ZP_05101520.1| nitrogen regulation protein [Roseobacter sp. GAI101] gi|214045184|gb|EEB85822.1| nitrogen regulation protein [Roseobacter sp. GAI101] Length = 455 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPDLMKRTARAL 118 >gi|311747392|ref|ZP_07721177.1| sigma-54 dependent DNA-binding response regulator CrdA [Algoriphagus sp. PR1] gi|126574677|gb|EAZ79064.1| sigma-54 dependent DNA-binding response regulator CrdA [Algoriphagus sp. PR1] Length = 385 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L + L ++V +GA K+ EE F L+L D+ MP+MDGIE Sbjct: 3 KILIIDDEKVIRATLREILEYEKFDVTEAQDGAEGLSKLTEEDFDLVLCDVKMPKMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +A L + + I+ ++ ++ + KP L L LLT++N Sbjct: 63 VLEKAKALVKSPQFIMISAHGSIETAVEATKKGAFDFIPKPPDLNRL------LLTVRN 115 >gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196] gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291] gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196] gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ M+ +++ + K GY ++ N+G A ++ L++ DI+MP +DG Sbjct: 3 KILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPYLDGFS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + E+ ++ ++ +T ++KPF + L+ +VN LL Sbjct: 63 VCRVSREM-TNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALL 116 >gi|332664071|ref|YP_004446859.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332332885|gb|AEE49986.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1035 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ ++R FL + L K Y V S NG A+ +E+ +++TD++MP +DG+EL Sbjct: 784 VLVVEDNAELRAFLTQTLAKK-YLVSSAENGEIAFAMAQEQIPDVVVTDLMMPRVDGMEL 842 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T A+ +S L KPF+ +L+ V+ LL Sbjct: 843 LQLLKGNLPTSHIPVLMLTARTALETRLESIKFGADAYLQKPFNTLELMAWVDNLL 898 >gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] Length = 221 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ D+ R + K L K Y V SC +G A D + + L++TDI+MP ++G E Sbjct: 2 RILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEYDLIITDIMMPNVNGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + V+ +T + + DS A + KPF +L+ + L+ Sbjct: 62 FIEKLRNNKNNTPVILLTAKDTLEDKIVGLDSGAD---DYIVKPFEFDELLARIRVLM 116 >gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 751 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D++ R L + + G VV+ NG A ++VRE PF L++ D MP MDG+ Sbjct: 630 VLVADDNEANRVLLHRMFSRMGGRVVTVENGKEAVERVRERPFDLVVLDYHMPVMDGVTA 689 Query: 65 A---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 A RR + + V+ +TG A +L KP L DL V R Sbjct: 690 AGVMRREGSVGEGVLVV-LTGQALAEDKEFFMREAFDDMLLKPVRLEDLRRLVER 743 >gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 229 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 42/67 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + KIL+ EDD +R + + L GY+V++ G A +V++E L++ D+ +P++D Sbjct: 2 VTAKILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLD 61 Query: 61 GIELARR 67 G+E+ R+ Sbjct: 62 GLEVCRQ 68 >gi|297569488|ref|YP_003690832.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296925403|gb|ADH86213.1| two component transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 181 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 56/113 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q ILL +D+ D R+ L KA + GY+V + SA +R+E + + D+ MP G+ Sbjct: 6 QSILLVDDEVDFRKRLGKAFARRGYKVYEADGYESALALIRQENPAQAVIDLRMPGKSGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL A L ++ +TG+ ++A ++ L KP + D++ N Sbjct: 66 ELVAAAARLPEPPAMVVLTGYGSIATATEAIRLGALSYLPKPADVDDIIQAFN 118 >gi|227823903|ref|YP_002827876.1| two component signal transduction response regulator protein [Sinorhizobium fredii NGR234] gi|251757250|sp|P50351|CHVI_RHISN RecName: Full=Transcriptional regulatory protein ChvI gi|227342905|gb|ACP27123.1| two component signal transduction response regulator protein [Sinorhizobium fredii NGR234] Length = 241 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I L +DD ++ + AL GY+V + +GASA + + P L + DI MP MDG+ Sbjct: 2 QTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPHLAIFDIKMPRMDGM 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR + DL V+F+T + + D ++KPF R LV V Sbjct: 62 ELLRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVK 113 Query: 116 RLL 118 +L Sbjct: 114 AIL 116 >gi|218887779|ref|YP_002437100.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758733|gb|ACL09632.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 571 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED F+ K L K GYEV S +G+ +R++ F L+L DI MP MDG+E Sbjct: 432 RILVAEDHPMNLMFIEKFLQKQGYEVQSVTDGSEVVPALRKQEFDLVLMDIAMPVMDGME 491 Query: 64 LAR 66 R Sbjct: 492 ATR 494 >gi|163847230|ref|YP_001635274.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525071|ref|YP_002569542.1| CheA signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668519|gb|ABY34885.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448950|gb|ACM53216.1| CheA signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 739 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D R L L AGY+V +GA A D++R P+ L+++DI MP +DG Sbjct: 618 RLLVVDDSFTTRELLRSILQSAGYDVTVAIDGADALDRLRSTPYDLVVSDIEMPRVDGFT 677 Query: 64 LARRA-TELD-PDLKVMFITGFAA 85 L R EL DL V+ IT A+ Sbjct: 678 LTTRIRNELALVDLPVILITSLAS 701 >gi|312891172|ref|ZP_07750694.1| two component, sigma54 specific, transcriptional regulator, Fis family [Mucilaginibacter paludis DSM 18603] gi|311296339|gb|EFQ73486.1| two component, sigma54 specific, transcriptional regulator, Fis family [Mucilaginibacter paludis DSM 18603] Length = 472 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 68/120 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ ++ L K L + G+ V + +G+ A++ +++E F+L+L D + + DG Sbjct: 2 KNILIIDDEVNVSLLLSKFLTRNGFNVTTAPSGSIAFEHLKKESFNLVLCDFRLEDTDGR 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ ++ P V+ ITG++ + + + ++KP + ++++ +N+ L +++ Sbjct: 62 EILKKIKNEYPQTGVIIITGYSDIKMAVELIKLGAYDYITKPLYPDEILSTINKALEMQS 121 >gi|300726984|ref|ZP_07060404.1| putative histidine kinase [Prevotella bryantii B14] gi|299775707|gb|EFI72297.1| putative histidine kinase [Prevotella bryantii B14] Length = 1366 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D DD R F+ + L YEVV NG A +K+ E ++L+D++MP MDG E Sbjct: 1112 VLLVDDSDDFREFMREELSDH-YEVVEAENGKVALEKIAEHRPHIILSDVMMPVMDGNEF 1170 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + ++ V+ +T + + ++KPF + L + L+T Sbjct: 1171 CRLLKGNPATANIPVIMLTARLTMLQKIEGLEHGADDYITKPFSMDLLRLRMANLMT 1227 >gi|325981193|ref|YP_004293595.1| two component, sigma54 specific, transcriptional regulator, Fis family [Nitrosomonas sp. AL212] gi|325530712|gb|ADZ25433.1| two component, sigma54 specific, transcriptional regulator, Fis family [Nitrosomonas sp. AL212] Length = 437 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 55/112 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+ + +L +G+E + NG A ++E ++++D+ M +DG L Sbjct: 6 ILVVEDDQDLLEAICTSLKLSGFETSAACNGNDAMQVLQEREIGMVVSDVQMKPVDGFTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + DP+L V+ +T +A + + L KPF L+ ++ R Sbjct: 66 LTKIKAFDPELPVLLMTAYADIEKAVAAMRIGACDYLLKPFDPDSLLAQIKR 117 >gi|238892480|ref|YP_002917214.1| transcriptional regulatory protein ZraR [Klebsiella pneumoniae NTUH-K2044] gi|238544796|dbj|BAH61147.1| DNA-binding response regulator in two-component regulatory system with ZraS [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 443 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD L L GY+V +NG A +++ ++ F L+L DI M EMDGI Sbjct: 7 QILVVDDDISHCTILQALLRGWGYQVGVAHNGLQALEQIHQQVFDLVLCDIRMAEMDGIA 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P + V+ +T F++V ++ L KP L Sbjct: 67 TLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDFDTL 113 >gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC 7002] gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus sp. PCC 7002] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ ++R L + L + G+ V G + ++ + LL+ D ++P+ G+E Sbjct: 2 RILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEYDLLILDWMLPQYSGVE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R L ++F+T V L KPF LR+L+ V LL Sbjct: 62 ICQRVRSLGRTTPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALL 116 >gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] Length = 219 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDD++RR L +AL GY V +G + EP+ ++ D+ +P MDGI Sbjct: 2 RVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ V L+ Sbjct: 62 VLERWRRDQKKVPVLILTARDRWSDKVAGIDAGAD---DYVTKPFHIEEVLARVRALI 116 >gi|83594090|ref|YP_427842.1| response regulator receiver domain-containing protein [Rhodospirillum rubrum ATCC 11170] gi|83577004|gb|ABC23555.1| Response regulator receiver domain protein (CheY) [Rhodospirillum rubrum ATCC 11170] Length = 122 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED +R L L +AG+ VV G + +R F L++TD++MP MDG E Sbjct: 3 EILIIEDMSGVRHALSGMLKRAGHSVVVAETGDQGLEHLRRRRFDLVITDMLMPGMDGTE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + + + V+ I+G A ++ ++ A K AK+ L KPF +L+ V+++L Sbjct: 63 VLFQLGAMPNHPPVIAISGGGA-GISAET-ALKAAKLKADAFLQKPFEKAELLAAVDKVL 120 Query: 119 T 119 Sbjct: 121 A 121 >gi|167037655|ref|YP_001665233.1| response regulator receiver protein, CheY [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040316|ref|YP_001663301.1| response regulator receiver protein [Thermoanaerobacter sp. X514] gi|256750754|ref|ZP_05491639.1| response regulator receiver protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914400|ref|ZP_07131716.1| response regulator receiver protein [Thermoanaerobacter sp. X561] gi|307264881|ref|ZP_07546443.1| response regulator receiver protein [Thermoanaerobacter wiegelii Rt8.B1] gi|307724364|ref|YP_003904115.1| response regulator receiver protein [Thermoanaerobacter sp. X513] gi|320116070|ref|YP_004186229.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389469|ref|ZP_08211036.1| response regulator receiver protein [Thermoanaerobacter ethanolicus JW 200] gi|166854556|gb|ABY92965.1| response regulator receiver protein [Thermoanaerobacter sp. X514] gi|166856489|gb|ABY94897.1| response regulator receiver protein, CheY [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750337|gb|EEU63356.1| response regulator receiver protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889335|gb|EFK84481.1| response regulator receiver protein [Thermoanaerobacter sp. X561] gi|306920139|gb|EFN50351.1| response regulator receiver protein [Thermoanaerobacter wiegelii Rt8.B1] gi|307581425|gb|ADN54824.1| response regulator receiver protein [Thermoanaerobacter sp. X513] gi|319929161|gb|ADV79846.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994474|gb|EGD52899.1| response regulator receiver protein [Thermoanaerobacter ethanolicus JW 200] Length = 119 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI++ +D MR + + K VV NGA A +K +E L++ DI MPEMDGI Sbjct: 3 KIMIVDDAAFMRMMIKDIISKNNLGSVVEAENGAVAVEKYFQENPDLVIMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + DP+ K++ + A+ ++ + KPF +V + +LL Sbjct: 63 QAVKAIRAKDPNAKIIMCSAMGQQAMVIEAIQAGAKDFIVKPFQPDRVVEAIKKLL 118 >gi|320162524|ref|YP_004175749.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319996378|dbj|BAJ65149.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 117 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D R L +AL KAG+ V ++G A +++ +L+ D++MP M+G+E Sbjct: 3 KILIVDDSSYARTLLKRALEKAGHVVCEASSGMDALEQLPTCQPNLVTMDLLMPGMEGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + P LKV+ IT + L+KP LVN V+ LL Sbjct: 63 LIGHLKAMQPSLKVIVITANIQDETRKELIQAGADAFLNKPVSPDVLVNTVSSLL 117 >gi|255525196|ref|ZP_05392139.1| two component transcriptional regulator, LytTR family [Clostridium carboxidivorans P7] gi|255511155|gb|EET87452.1| two component transcriptional regulator, LytTR family [Clostridium carboxidivorans P7] Length = 245 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+ + +D++ MR L KA+ K G+++V +G + V E+ ++ D+ MP+ Sbjct: 1 MELKVFIGDDEEGMRMVLKKAIEKIEGFKLVGEAADGEAVLSFVEEKHPEIIFLDVEMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++G+E A+R +++P ++F+T A A D+ + KPF L + +NR+ Sbjct: 61 LNGVECAKRIMDINPRTIIIFVT--AHDAYMSDAFQLYAFDYIVKPFKLDRIYQTLNRIK 118 Query: 119 TI 120 T+ Sbjct: 119 TL 120 >gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 238 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +RR L L K GYE+ +G +A K E + L++ D+++P MDG+E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + R ++ +M A + N + +V + KPF R+++ V +L Sbjct: 67 VCTRLRQVKSTPILML------TAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIL 120 >gi|134084226|emb|CAK47258.1| unnamed protein product [Aspergillus niger] Length = 1105 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 N +L+ +D+D + L L K G + +NG +A +K + +PF +L DI MP M Sbjct: 983 NLYVLIVDDNDINLKILATFLRKIGCSYETASNGLAALEKYKSSTKPFDYILMDISMPIM 1042 Query: 60 DGIELARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 DGI + + E + P +M +TG A+ + + A L KP L DL + Sbjct: 1043 DGIVSSSKIREYEEQHSLPRAAIMAVTGVASSEMQQQAFAAGIDDYLVKPLSLHDLKRIM 1102 Query: 115 N 115 N Sbjct: 1103 N 1103 >gi|332703870|ref|ZP_08423958.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio africanus str. Walvis Bay] gi|332554019|gb|EGJ51063.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio africanus str. Walvis Bay] Length = 459 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D++ +R L L G+EV+ +G + V + L+ DI +P MD Sbjct: 1 MSARILIIDDEESIRFSLRGVLEDEGHEVIEAGSGEQGLEMVENQGPDLVFLDIWLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + + E D+ V+ I+G V + + KP L +V VN+ L Sbjct: 61 GLHVLEKVREGQVDVPVIMISGHGNVETAVSAIKKGAFDFIEKPLSLEKVVITVNKAL 118 >gi|304312792|ref|YP_003812390.1| Response regulator receiver, CheY-like [gamma proteobacterium HdN1] gi|301798525|emb|CBL46755.1| Response regulator receiver, CheY-like [gamma proteobacterium HdN1] Length = 120 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D MR + AL + G+EV+ +G A K + L+L+D+ MP+MDGI L Sbjct: 4 ILAVDDSPSMRHMVTYALRRGGFEVIEACDGVDALAKAQGADVDLILSDVNMPQMDGISL 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA ++ ++ +T + + NA N ++ KPF L+ ++++L Sbjct: 64 VRELRALPAYSNIPILMLTTEMSTERKTEGRNAGANGWII-KPFDPDRLLATIHKVL 119 >gi|282165251|ref|YP_003357636.1| putative response regulator [Methanocella paludicola SANAE] gi|282157565|dbj|BAI62653.1| putative response regulator [Methanocella paludicola SANAE] Length = 128 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 21/131 (16%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ D+ + L GY+VV+ N+G A DK+ +E L+L DI+MP MDG E Sbjct: 3 KIMVVDDEPDLLEVVKLILESDGYQVVTANSGQEALDKIEKEMPDLVLLDIIMPRMDGWE 62 Query: 64 LARR--ATELDPDLKVMFIT----------GFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + R D+ V+ +T G V ++ ++KPF +L+ Sbjct: 63 VFSRIKGNTKTHDIPVIMLTAKDQRIDKLIGLHVVRVD---------DYITKPFGRAELL 113 Query: 112 NEVNRLLTIKN 122 + R+L K+ Sbjct: 114 ERIKRVLEEKH 124 >gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032] gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032] Length = 231 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ EDD D+ L ++L +AGYEV+ NG A K ++ L++ D++MP + Sbjct: 1 MTHRILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQAL-KFVDDSLDLVILDVMMPGLS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE ++ ++ ++F+T ++ + ++KPF +L Sbjct: 60 GIETCQQ-MRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEEL 108 >gi|150010055|ref|YP_001304798.1| two-component system sensor histidine kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938479|gb|ABR45176.1| two-component system sensor histidine kinase/response regulator, hybrid [Parabacteroides distasonis ATCC 8503] Length = 1369 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +L ED++D+ R+L+ A + Y VV NG +K E ++++D++MP M+ Sbjct: 1104 LRQTLLFVEDNEDLCRYLMNAF-QTDYRVVIAKNGKVGLEKALEILPDVIVSDVMMPVMN 1162 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE A + E + V+ +T A + L KPF L L ++ LL Sbjct: 1163 GIECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLL 1222 >gi|183220810|ref|YP_001838806.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910910|ref|YP_001962465.1| two component response regulator protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|146771521|gb|ABQ45413.1| two-component response regulator [Leptospira biflexa serovar Patoc] gi|167775586|gb|ABZ93887.1| Response regulator of a two component regulatory system [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779232|gb|ABZ97530.1| Putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +ILL EDD+ + L + L + Y V + A + R F L++ D+ +P+ + Sbjct: 1 MKPRILLVEDDEGLGETLKERLEQDKYRVEWAKTISEAENLYRPNAFDLVVLDLRLPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +LA + + DL +F+T A A+ + KPFHL++ + + R++++ Sbjct: 61 GFDLAEMIVKKEKDLPFLFLTAQAGAQERLRGFELGAAEFIPKPFHLKEFLIRLERVISL 120 >gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 229 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 14/124 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q IL+A+D+ ++ L L G+ + C +GA A ++RE ++ L D MP + G Sbjct: 5 DQSILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQIRESAPAIALLDWNMPIITG 64 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +++ RR + + V+ IT AA+ D +SKPF++R+++ V Sbjct: 65 LDVCRRLRDTGNRIPVIMITARDEMDDRVAALEAGADD-------FISKPFNIREVLARV 117 Query: 115 NRLL 118 LL Sbjct: 118 KALL 121 >gi|28210587|ref|NP_781531.1| two-component response regulator [Clostridium tetani E88] gi|28203025|gb|AAO35468.1| two-component response regulator [Clostridium tetani E88] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED++ + L LGK GY+V+S +G + ++ F L++ D+++P+++ Sbjct: 1 MKESILIIEDEEKVSSVLKAYLGKEGYKVISTTSGIEGIEIFKKGNFKLIILDLMLPDIE 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ + + D+ + +T ++ + + L KPF R+L VN L Sbjct: 61 GEEVCKIIRGI-SDVYIFMLTAKGDLSNRIEGLNIGGDEYLVKPFSPRELTARVNALF 117 >gi|87310840|ref|ZP_01092966.1| acetoacetate metabolism regulatory protein atoC [Blastopirellula marina DSM 3645] gi|87286355|gb|EAQ78263.1| acetoacetate metabolism regulatory protein atoC [Blastopirellula marina DSM 3645] Length = 460 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 46/79 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL A+D+ +++ + L + G+EV C +G +A + + +L D+ MP ++GI+ Sbjct: 2 KILFADDEKSLQKLMSLELPRLGHEVTVCPDGLTAVAALERNTYDCILVDLDMPGLNGIQ 61 Query: 64 LARRATELDPDLKVMFITG 82 + +A E P+ + + +TG Sbjct: 62 VIAKAKEFSPETEAIVLTG 80 >gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 7/125 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ ED+ + RFL L GY V ++G S Y+K L++ D+++PE+ Sbjct: 1 MKTRILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPELS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE+ RR + + D+ ++ +T V+ + DS A ++K F + +L+ + + Sbjct: 61 GIEVCRRVRK-ESDVPIIMLTAKDDVSDKVMGLDSGAD---DYMTKSFAIEELLARIRVI 116 Query: 118 LTIKN 122 L K+ Sbjct: 117 LKRKS 121 >gi|319788265|ref|YP_004147740.1| response regulator receiver protein [Pseudoxanthomonas suwonensis 11-1] gi|317466777|gb|ADV28509.1| response regulator receiver protein [Pseudoxanthomonas suwonensis 11-1] Length = 133 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 54/107 (50%), Gaps = 9/107 (8%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIEL 64 L+ +D+ +R L GYEVV + A ++ R SLL+TD +MP M G L Sbjct: 14 LVVDDEPGVRMCTADVLLDMGYEVVEAGSAEEALAELDRGLHPSLLVTDHLMPGMSGANL 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDL 110 AR DP V+ ++G+ V L+P A V LSKPF L DL Sbjct: 74 AREVITRDPGTAVIVVSGYTNVELDP-------ALVRLSKPFRLNDL 113 >gi|302037676|ref|YP_003797998.1| chemotaxis regulator CheY [Candidatus Nitrospira defluvii] gi|300605740|emb|CBK42073.1| Chemotaxis regulator CheY [Candidatus Nitrospira defluvii] Length = 123 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 7/123 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE 58 M + +L+ +D MR+ + L AGY+VV NG A KV +P L++TD+ MPE Sbjct: 1 MAKTVLVVDDSPTMRQMVAFTLTSAGYQVVEAGNGKEAVGKVNGGAKP-DLVVTDLNMPE 59 Query: 59 MDGIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MDGI L + ++ P LK ++ +T A+ A + KPF+ ++ + Sbjct: 60 MDGITLIKEIRKM-PALKFTPILMLTTEASDDKKKAGQAAGATGWIVKPFNPEQMMAVIK 118 Query: 116 RLL 118 ++L Sbjct: 119 KVL 121 >gi|300867936|ref|ZP_07112576.1| response regulator receiver modulated serine phosphatase [Oscillatoria sp. PCC 6506] gi|300334073|emb|CBN57754.1| response regulator receiver modulated serine phosphatase [Oscillatoria sp. PCC 6506] Length = 377 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD ++ L + L K GYEV +NG + ++ +L++ D +MP + GIE Sbjct: 3 QILVIDDDTAVQELLRRTLKKQGYEVTVASNGEDGITQAQQLRPALIICDWIMPRLTGIE 62 Query: 64 LARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RR + +PDL + +T +VA +SKP L +L Sbjct: 63 VCRR-VKANPDLSTTQFFLLTSLGSVADRVKGLDAGADDFISKPIELNEL 111 >gi|312112936|ref|YP_004010532.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218065|gb|ADP69433.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 952 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 11/118 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +LL +D++ +R L G+ V+ +G A + E +L+TD MP M G E Sbjct: 833 VLLTDDNNFVRDGAAAMLEALGHTVIQAESGPCALHHLAEGCRCDVLITDQRMPGMLGSE 892 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RRA +L PDL + ITGFA + D +A P+ LSKPF R L E+ R+L + Sbjct: 893 LVRRARDLRPDLPAVLITGFAEEG-DADVDALPR----LSKPF--RSL--ELERVLAM 941 >gi|282880326|ref|ZP_06289040.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305828|gb|EFA97874.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] Length = 232 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GY C +G Y + ++ + + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYIATLCPDGEEGYKEFLKDRYDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV + +L Sbjct: 66 LAQEIRQANAEMPIIFLT---AKVLKED--ILEGFKIGADDYITKPFSMEELVLRIEAIL 120 >gi|260433537|ref|ZP_05787508.1| nitrogen assimilation regulatory protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417365|gb|EEX10624.1| nitrogen assimilation regulatory protein [Silicibacter lacuscaerulensis ITI-1157] Length = 455 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + L KPF L DL+ R L Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRTARALER 120 Query: 121 KN 122 K Sbjct: 121 KQ 122 >gi|254713505|ref|ZP_05175316.1| Transcriptional regulatory protein chvI [Brucella ceti M644/93/1] gi|254716139|ref|ZP_05177950.1| Transcriptional regulatory protein chvI [Brucella ceti M13/05/1] gi|261217910|ref|ZP_05932191.1| regulatory protein BvrR [Brucella ceti M13/05/1] gi|261321240|ref|ZP_05960437.1| regulatory protein BvrR [Brucella ceti M644/93/1] gi|260922999|gb|EEX89567.1| regulatory protein BvrR [Brucella ceti M13/05/1] gi|261293930|gb|EEX97426.1| regulatory protein BvrR [Brucella ceti M644/93/1] Length = 239 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL R + DL V+F+T + + D ++KPF R LV V Sbjct: 67 MELLRHLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLVERV 118 Query: 115 NRLL 118 +L Sbjct: 119 KAVL 122 >gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC 12478] Length = 1405 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L + L A Y V + ++G A +R E L+++D++MP +DG+ Sbjct: 647 RVLVADDNADMREYLTRLLRSADYRVEAVSDGRQALAVIRAEVPDLVISDVMMPRLDGLA 706 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L RA + V+ ++ A + + L KPF +L+ V Sbjct: 707 LVAQLRADPRTAAVPVLLLSARAGQEASVEGLDAGADDYLVKPFAATELLARV 759 >gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 238 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL EDD+D+ L L GY++V +G A ++ ++ + ++ D+++P +D Sbjct: 1 MAKTILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RR ++ L V+ I+ + L+KPF L +L+ V L Sbjct: 61 GLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118 >gi|171914218|ref|ZP_02929688.1| two component transcriptional regulator, Fis family protein [Verrucomicrobium spinosum DSM 4136] Length = 174 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL +DD+ R L +AL + GY G A R++ + + D+ MP M GI Sbjct: 2 KNLLLVDDDETFREQLSRALLRRGYACQMAPTGEDAVTMARQQTPDVAVVDLRMPGMSGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E + ++ P +++ +TG+ ++A ++ A L+KP + +V + L Sbjct: 62 ETVKALHQIAPRARLLVLTGYGSIATALEAVRVGAADYLTKPVNADQVVAAIEGL 116 >gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 641 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 22/128 (17%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+ILLAED++ R L + L K G+ V +G +A + +S++L DI MPEMDG+ Sbjct: 521 QRILLAEDNEINRMMLARLLEKTGHSVDVVPDGKAAVQCWKNGSYSMILMDIQMPEMDGL 580 Query: 63 ELARRATELDP----DLKVMFITGFAAVALNPDSNAPKNAKV---------LSKPFHLRD 109 E R L+ + ++ +TG ++P++ + L KP L + Sbjct: 581 EATRIIRSLEAGQGGHIPIIAMTG---------QDSPEDVENCYRAGMDLHLKKPVQLCE 631 Query: 110 LVNEVNRL 117 LV V R+ Sbjct: 632 LVAAVARV 639 >gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 255 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MD Sbjct: 22 VSMKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMD 81 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R D ++ +T V+ L+KPF L +L+ V L+ Sbjct: 82 GLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLV 139 >gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ [Alteromonas sp. SN2] Length = 224 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L L + GY V +NG A + E + L + DI +P+MDG E Sbjct: 2 RILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGLPKMDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R A + D V+ +T + L+KPFH +L+ V L+ Sbjct: 62 VIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALI 116 >gi|312879218|ref|ZP_07739018.1| CheA signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782509|gb|EFQ22907.1| CheA signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 734 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED R L L AG+EV + +G ++ VRE F L+++D+ MP M G +L Sbjct: 618 VLLVEDSITSRTLLRNILSAAGHEVTTAVDGEEGWNLVREGSFDLVVSDVEMPRMSGFDL 677 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD----SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R DP L+ + + ++ D + +A ++ + F +L++ V RLL Sbjct: 678 TARIRS-DPRLQELPVVLVTSLESREDRERGAEVGADAYIVKRGFDQGNLLDAVRRLL 734 >gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 211 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEKALHFVQKEKPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +KV+ ++ F+ Sbjct: 61 MDGIEATKRIKQYDETIKVLILSSFS 86 >gi|257066862|ref|YP_003153118.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798742|gb|ACV29397.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 219 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 9/118 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + EDD +R + AL + GYEV +G+ V++ P LL+ DI++PE DGI + Sbjct: 2 IYVVEDDKSIRNLVEYALREKGYEVAGYEDGSQIVSDVKDSPGELLILDIMLPEKDGITI 61 Query: 65 ARRATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E D+ ++ +T F V + D A ++KPF + +L++ V +L Sbjct: 62 LKEIREF-SDIPIIMLTARTDEFDKV-MGLDLGAD---DYITKPFSILELISRVKAVL 114 >gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855] gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4] gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855] gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 224 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 42/63 (66%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI+L ED+ ++ F+ + L + G+EV +G + ++ ++ E F LL+ DI+MP M+G+E Sbjct: 3 KIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNESFDLLILDIIMPGMNGLE 62 Query: 64 LAR 66 L R Sbjct: 63 LCR 65 >gi|254440391|ref|ZP_05053885.1| Sigma-54 interaction domain family [Octadecabacter antarcticus 307] gi|198255837|gb|EDY80151.1| Sigma-54 interaction domain family [Octadecabacter antarcticus 307] Length = 444 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A V ++ ++++DI MP MDG++ Sbjct: 6 KIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKGVGQDYPGIVVSDIKMPGMDGMQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNE--VNRLL 118 ++ +D L V+ ITG V + ++ L KPF+ + +L + V R L Sbjct: 66 FLKKLKGVDSSLPVIMITGHGDVPMAVEAMRIGAFDFLEKPFNPDRMTELAKKATVARRL 125 Query: 119 TIKN 122 T+ N Sbjct: 126 TLDN 129 >gi|189466658|ref|ZP_03015443.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM 17393] gi|189434922|gb|EDV03907.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM 17393] Length = 1369 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD D+R +L K+L + YE++ NG YDK + L+L+DI+MP+ +G+EL Sbjct: 1116 VLLVEDDKDVRDYLHKSL-ENDYEIIEAANGIKGYDKAVQFFPDLVLSDIMMPKRNGLEL 1174 >gi|188586187|ref|YP_001917732.1| two component transcriptional regulator, LytTR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350874|gb|ACB85144.1| two component transcriptional regulator, LytTR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 240 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVA 87 E+ NG A D V+ L DI MP++DG+E A+ LD DLKV+FIT F A Sbjct: 32 EIYLAENGEEAVDAVKNNDIDLAFMDIDMPKLDGLEAAKMMISLDSDLKVVFITAFPEYA 91 Query: 88 LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DS + + KP + + RL+ Sbjct: 92 C--DSYDLRALDYILKPIDFHRVNENIERLI 120 >gi|218246324|ref|YP_002371695.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|257059371|ref|YP_003137259.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|218166802|gb|ACK65539.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|256589537|gb|ACV00424.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 374 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 12/123 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + + L L + GYEV NG A + + EP ++L DI MP++DG ++ Sbjct: 11 ILIVDDIPENLQLLFTMLTEQGYEVRRVLNGKQALNAAKIEPPDIILLDIKMPDLDGYQV 70 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 ++TE D+ V+F++ ALN + K +V ++KPF L++++ V Sbjct: 71 CEKLKSTETTRDIPVIFLS-----ALNDAFDKVKAFEVGGVDYITKPFQLQEVIIRVENQ 125 Query: 118 LTI 120 L + Sbjct: 126 LKL 128 >gi|313683328|ref|YP_004061066.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313156188|gb|ADR34866.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 222 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + KILL EDD ++ + + L + G+EVV + +A D + E+ + LLL D+ +P D Sbjct: 2 IKSKILLLEDDPNLSESVSEYLEEQGFEVVCVYDAHTAEDSLYEQKYDLLLLDVNVPSGD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L + + + +FIT A++ + KPF L++L+ + +L Sbjct: 62 GFSLLKESRKRGNSTPAIFITSRNAMSDVEAGFESGGDDYIRKPFALKELLLRIQTIL 119 >gi|304393592|ref|ZP_07375520.1| two component transcriptional regulator [Ahrensia sp. R2A130] gi|303294599|gb|EFL88971.1| two component transcriptional regulator [Ahrensia sp. R2A130] Length = 216 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L+ AL +A Y V S ++G + EP+ ++ D+ +PE+DGI Sbjct: 2 RILVVEDDRDLNRQLVSALEEASYVVDSASDGEEGHFLGDTEPYDAVILDVGLPELDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VLEKWRRGGRSMPVLLLTARDRWSDKVAGIDAGAD---DYVAKPFHMEEVLARLRALI 116 >gi|237711651|ref|ZP_04542132.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|265753071|ref|ZP_06088640.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|229454346|gb|EEO60067.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263236257|gb|EEZ21752.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 233 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD ++ + L GYEV++ +NG +E+ ++++DI MP MDG Sbjct: 3 KLLLVEDDTNLCYIIRGGLEDMIGGYEVMTASNGEEGLRIWKEQHPDIIISDIEMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ RR E D + ++F +G + + KPF +L + LL +K Sbjct: 63 YEMVRRIRETDGFIPIVFTSGRVSPKDVVKGYELGVNNYIKKPFLAEELDAHIGALLKMK 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 223 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ R L +AL +AGY V +G + EP+ ++ DI +PEMDGI Sbjct: 2 RILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGLPEMDGIT 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + V+ +T ++ D+ A ++KPFH+++++ + L+ Sbjct: 62 ALERWRADGKTMPVLILTARDRWSDKVAGIDAGAD---DYVAKPFHVQEVLARIRALI 116 >gi|300776691|ref|ZP_07086549.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300502201|gb|EFK33341.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 12/127 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KILL +D+ D+ L L K GY++ + NG +K +E L+L D++MPE D Sbjct: 1 MSKKILLIDDELDILEILSYNLEKEGYDIYTATNGNEGIEKAKEIVPDLILLDVMMPEKD 60 Query: 61 GIELA---RRATELDPDLKVMF---------ITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 GIE R+ EL L V + GF A A + K ++SK L Sbjct: 61 GIETCQELRKVKELQKTLIVFLSARSEEFSQLAGFQAGANDYIVKLIKPKILISKVNALL 120 Query: 109 DLVNEVN 115 L ++V+ Sbjct: 121 QLTSQVS 127 >gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] Length = 240 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D++ + R L L K GYE +G +A E + +L DI++P++D Sbjct: 1 MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ A+ L D ++KPF R+L+ Sbjct: 61 GIEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADD-------YMTKPFSPRELIAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 LKAIL 118 >gi|171058220|ref|YP_001790569.1| response regulator receiver protein [Leptothrix cholodnii SP-6] gi|170775665|gb|ACB33804.1| response regulator receiver protein [Leptothrix cholodnii SP-6] Length = 122 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +++ +D R + AL + GY VV ++G A K+ +P L++ D+ MPEMD Sbjct: 1 MSNTVMVVDDSSSFRTVVTLALKRVGYGVVEASDGRDAVRKLDAQPIDLIVCDVNMPEMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 GI R R T V+ +T + A ++KPF LV V Sbjct: 61 GISFVRHVRGTVKHRRTPVIMLTTETSDAKKQAGRDVGANAWITKPFQPSKLVEMVG 117 >gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] Length = 219 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + L AGY +GA A D++ +E F L+L DI++PE+DG E Sbjct: 3 RILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEGFDLILLDIMLPEIDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L L ++ V+F+T A L+KPF + +L+ V +L Sbjct: 63 LMDYIRPL--EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVL 115 >gi|197118370|ref|YP_002138797.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087730|gb|ACH39001.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 509 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +IL+ +D+ D+ F + L + GY+VV+ + A + FS+ L D+ +P+ DG Sbjct: 5 STRILIIDDERDVCTFFSRLLSRKGYQVVTAASEPEALSALEAAQFSVALVDLKLPDTDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I L P +V+ +TG++ V + + L KPF D ++++ +L+ Sbjct: 65 ITLLEIIKSRQPACEVIIMTGYSTVKTAVAAMQLGAYEYLEKPF---DDIDQIEQLV 118 >gi|148654224|ref|YP_001274429.1| CheA signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566334|gb|ABQ88479.1| CheA signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 742 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 8/119 (6%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DD R LI++ L AGY+V + +G A D++R E + L+++D+ MP +DG L Sbjct: 624 LLVVDDSFATRELIRSILSAAGYDVATAVDGLDALDRLRAETYDLVVSDVEMPRVDGFTL 683 Query: 65 ARRA-TEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R +EL DL V+ +T A+ +++ + +V ++ + ++ N+ N L TI+ Sbjct: 684 TSRIRSELGKTDLPVIIVTSLAS-----EAHRRRGLEVGAQAYIVKSQFNQNNLLETIQ 737 >gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 231 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 4/125 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++LL +D+ +R + L ++G+ V +N +D +++ L+++D++MP++D Sbjct: 1 MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G + ++ E DP + + + A + D A V L KPF +LV + L Sbjct: 61 GYQFLKQLRE-DPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENL 119 Query: 118 LTIKN 122 LT +N Sbjct: 120 LTRRN 124 >gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis MED134] gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis MED134] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L GY+V++ +NG A ++ L++ D++MPEMDGIE Sbjct: 7 KILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKHQPHLIILDVMMPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A + DL+ IT F A + A +A ++KP + L+++V LL Sbjct: 67 -ACEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKVKALL 123 >gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 247 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P+M G+E Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPKMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G++ Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLPKMSGMD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + V+ +T ++ + L KPFH+ +L+ VN LL Sbjct: 62 LVKALRDEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALL 116 >gi|325278160|ref|ZP_08143666.1| CheA signal transduction histidine kinase [Pseudomonas sp. TJI-51] gi|324096707|gb|EGB95047.1| CheA signal transduction histidine kinase [Pseudomonas sp. TJI-51] Length = 391 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDG Sbjct: 267 HKRILVVDDSLTVRELQRKLLSHRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDG 326 Query: 62 IE---LARRATELDPDLKVMFIT 81 IE L RR L L VM ++ Sbjct: 327 IELVTLVRRDQRLQ-GLPVMVVS 348 >gi|320159362|ref|YP_004191740.1| putative two-component response regulator [Vibrio vulnificus MO6-24/O] gi|319934674|gb|ADV89537.1| putative two-component response regulator [Vibrio vulnificus MO6-24/O] Length = 409 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 55/114 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +I +D+ +R + +AL G EV+S N A + + +++TDI MP M+ Sbjct: 1 MNSQIYFIDDEPHIRDSVSQALMIEGVEVISFPNAVEALKHIDTQRAGVVVTDIHMPVMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+ L + +P +V+ +TG+ V ++ L KPF L+ + Sbjct: 61 GLALLKELRSRNPHFQVIVLTGYGDVKTAVEAMKGGAYDFLEKPFSTDSLLKAI 114 >gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 223 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL AED+ +R +K L G+ V C +G D + + +++ DI+MP +DG+ Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + VM +T AVA L+KPF +L + LL Sbjct: 62 VLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALL 116 >gi|294675080|ref|YP_003575696.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294473361|gb|ADE82750.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 1284 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMPEMD 60 ++L+ +DD+++ R++ + LG Y + +G A + E+ F L+++D++MPEMD Sbjct: 1026 QVLIVDDDEEIGRYIAQELG-CYYHITPVTSGREALRLLLSESEKQFDLVVSDVMMPEMD 1084 Query: 61 GIELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R T ++ + + V+ +T AAVA + L+KPF + +L +N L+ Sbjct: 1085 GFTLLRMIKTNMNLNHIPVVMLTSKAAVANRLEGLEKGADAFLAKPFDMDELHMVINNLI 1144 Query: 119 T 119 + Sbjct: 1145 S 1145 >gi|262281167|ref|ZP_06058949.1| chemotaxis protein histidine kinase [Acinetobacter calcoaceticus RUH2202] gi|262257398|gb|EEY76134.1| chemotaxis protein histidine kinase [Acinetobacter calcoaceticus RUH2202] Length = 1501 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ L+L DI MP MDG E+ Sbjct: 1378 IMIVDDSVTVRKVTTRLLERQGYDVVTAKDGIDAIEQLENIKPDLMLLDIEMPRMDGFEV 1437 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R +L D+ V+ IT + + + KPF DL++ ++ T + Sbjct: 1438 LNLVRHHDLHQDMPVIMITSRTGEKHRERAFTLGVNQYMGKPFQEEDLLHNIDAFFTTR 1496 >gi|237723886|ref|ZP_04554367.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229437712|gb|EEO47789.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1316 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ +M F+++ L Y++++ NG A + +L+++DI+MPEMDG+EL Sbjct: 1072 VLIVEDNVEMLAFVVRQLSPV-YQILTATNGVEALKVLEGHTVNLIVSDIMMPEMDGLEL 1130 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++LD + ++ +T + D + KPF + L V LL+ Sbjct: 1131 CDRIKSDLDYSHIPIVLLTAKTTLQSKIDGLKSGADAYIEKPFSVEYLKVSVANLLS 1187 >gi|226228494|ref|YP_002762600.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091685|dbj|BAH40130.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 694 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ +D+ + R L + L G+EV + + A V P F ++LTD MP M Sbjct: 577 RRILVVDDEPAVARALTRLLSSIGHEVTTETDPEDALQSVVRNPMAFDVILTDQTMPGMT 636 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVN 115 G LAR + PDL V+ +G++ D+ L+KP +R L++ +N Sbjct: 637 GDALARAVLSIRPDLPVVLCSGYSEHYQLDDAQRDGIHAFLTKPLDREQVRSLLDSLN 694 >gi|187250534|ref|YP_001875016.1| response regulator receiver protein [Elusimicrobium minutum Pei191] gi|186970694|gb|ACC97679.1| Response regulator receiver protein [Elusimicrobium minutum Pei191] Length = 119 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDG 61 KI L +D D +R + L GYEV+ C +SA +D ++ +++L DI P +G Sbjct: 2 KIALVDDSDMLRAAISNTLESFGYEVM-CQAASSAELFDYLKTNKVNIVLLDIFFPNENG 60 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ R + D+KV+ ITG + ++ + ++ KPF DL + + T Sbjct: 61 LDTLRALKQYHKDIKVIIITGMNQKIITQEAQSLGADDIIYKPFSTDDLTLALQKFKT 118 >gi|157376168|ref|YP_001474768.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] gi|157318542|gb|ABV37640.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] Length = 367 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 45/83 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD RR + L G V+ ++G +K ++ F ++L D+ MP M G+ + Sbjct: 8 ILLVEDDPVFRRIVASFLDSRGATVIEADDGEQGLEKFKQRAFDIVLADLSMPIMGGLVM 67 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 ++ +EL+P + I+G +A Sbjct: 68 LKKMSELNPGTPSIVISGNQVMA 90 >gi|146282050|ref|YP_001172203.1| sensor/response regulator hybrid [Pseudomonas stutzeri A1501] gi|145570255|gb|ABP79361.1| probable sensor/response regulator hybrid [Pseudomonas stutzeri A1501] Length = 763 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 ++ +L+ +DD + L G +V + N+ +A + + + +L+TD +MP M Sbjct: 634 LSLSVLVVDDDPLVLDNTASMLEDLGCQVTAVNSAETALGLLTQRVAYDILITDHMMPGM 693 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +LA R P+L V+ ++G+A +A ++P+ +VL+KPF + L++ + + Sbjct: 694 TGAQLADRLRNEQPELPVLVVSGYADLA-----DSPRQLQVLAKPFTQQTLLDAIQQ 745 >gi|189423458|ref|YP_001950635.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419717|gb|ACD94115.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1068 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED R L + L G++VV+ NG +++ + + L++TD+ MPE+DG + Sbjct: 811 RILLAEDQAINRLVLSRLLNDLGHQVVAVENGRRLLEELAQGGYDLVITDVSMPELDGFQ 870 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R R+ +L + + A AL D + + LSKP + LV + +LL Sbjct: 871 AVRAIRSRQLPGIDSAIPVLAMTAHALGEDRERCLESGMDGYLSKPVDIEKLVAALQQLL 930 >gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 223 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ R L +AL +AGY V +G + EP+ ++ DI +PEMDGI Sbjct: 2 RILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VLEKWRADGKTMPVLILTARDRWSDKVAGIDAGAD---DYVAKPFHVEEVLARIRALI 116 >gi|110597377|ref|ZP_01385664.1| Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type [Chlorobium ferrooxidans DSM 13031] gi|110340921|gb|EAT59392.1| Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type [Chlorobium ferrooxidans DSM 13031] Length = 451 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 55/106 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GYEV + +G ++ L++TD+ M MD Sbjct: 1 MKAKILVIDDDTSLRRVLEYNLQEEGYEVETAASGEEGLMRLDLFGPDLVITDMKMTGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G+++ + E P+ V+ IT F +V ++ ++KPF+ Sbjct: 61 GMKVLKSVRERSPETLVIIITAFGSVDAAVEAMKAGAYDYITKPFN 106 >gi|110679973|ref|YP_682980.1| nitrogen regulation protein [Roseobacter denitrificans OCh 114] gi|109456089|gb|ABG32294.1| nitrogen regulation protein [Roseobacter denitrificans OCh 114] Length = 454 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + ++ + V E ++++D++MP+ + Sbjct: 1 MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLTTLLRWVGEGKGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L + Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPDLMKRTARALEM 120 Query: 121 KN 122 + Sbjct: 121 QQ 122 >gi|95929432|ref|ZP_01312175.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95134548|gb|EAT16204.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 461 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 47/78 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD+ L L K+GY V + +G + + + PF +++TD+ +P MDG+E+ Sbjct: 7 ILLIDDDEQSCATLGLLLKKSGYSVETALSGEQGLELLPKTPFEIVITDLRLPGMDGLEI 66 Query: 65 ARRATELDPDLKVMFITG 82 +R E + ++ V+ +TG Sbjct: 67 LKRVKEHNAEINVILVTG 84 >gi|146301929|ref|YP_001196520.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146156347|gb|ABQ07201.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 1400 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ ED +R+F+ K L K Y ++ NG A +K + +L+++D++MPEM G Sbjct: 1145 QTILIVEDHKVLRKFM-KNLLKKDYNIIEAENGKIALEKALKFVPNLIISDVIMPEMVGT 1203 Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + E + V+ +T +++ + +SKPF+L + V LL Sbjct: 1204 ELCSKIKENIKTSHIPVILLTSRSSLVYKFEGLESGADDYISKPFNLMEFRLRVKNLL 1261 >gi|108758352|ref|YP_633306.1| sigma-54 dependent DNA-binding reponse regulator CrdA [Myxococcus xanthus DK 1622] gi|27777738|gb|AAO23978.1| CrdA [Myxococcus xanthus] gi|34329427|gb|AAQ63916.1| mutant NtrC-like activator [Myxococcus xanthus] gi|108462232|gb|ABF87417.1| sigma-54 dependent DNA-binding reponse regulator CrdA [Myxococcus xanthus DK 1622] Length = 498 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 48/86 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ +D+ ++ L ++L AGY+ N+G A D V P +L D+ MP+MD Sbjct: 1 MPASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ + TEL P+L V+ ++G + Sbjct: 61 GLTALAKLTELKPELPVIMMSGHGTI 86 >gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1296 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ DMR ++ L KA YEVV +G A V L+LTD++MP +DG L Sbjct: 657 VLVVDDNADMRAYIANLL-KAHYEVVLAGDGVEALAAVERRMPDLVLTDVMMPRLDGFGL 715 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A R E L V+ ++ A LSKPF R+L+ V Sbjct: 716 LAALRTDERTRALPVIVLSARAGEEATLAGLERGADDYLSKPFAARELLGRV 767 >gi|17230878|ref|NP_487426.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132481|dbj|BAB75085.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 127 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+DD+D R L L + G+EV NG A +KV EE LL+ D MPE+ G+E Sbjct: 10 KVLIADDDEDSRMMLSFVLQEEGWEVYEACNGKEALEKVIEEKPDLLILDNRMPELSGVE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + + ++ V+ T + L+ +++ + KP+ + L+ V Sbjct: 70 VYQYLQAEGINIAVVLATAYG--YLDELASSLGVEYFIHKPYEIPKLLKMV 118 >gi|330821540|ref|YP_004350402.1| Response regulator receiver domain protein CheY [Burkholderia gladioli BSR3] gi|327373535|gb|AEA64890.1| Response regulator receiver domain protein CheY [Burkholderia gladioli BSR3] Length = 120 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ DM L + GY V++ +NGA A D+VRE L++TD +MP M G Sbjct: 2 KTILIVDDEFDMLTVWRLLLEQCGYAVITASNGAIALDRVRETMPDLIVTDYMMPVMTGA 61 Query: 63 ELARRATELDPDLK-VMFITGFAAVALN-PDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL A DP L+ + I AAV + P S + A+ KP L + R L Sbjct: 62 ELC-AALARDPGLRQIPVILCSAAVEIPVPPSEQVETAR---KPLSFDTLHGMIRRRL 115 >gi|319898247|ref|YP_004158340.1| transcriptional regulator BatR [Bartonella clarridgeiae 73] gi|319402211|emb|CBI75742.1| transcriptional regulator BatR [Bartonella clarridgeiae 73] Length = 240 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +G++A + P L + DI MP MD Sbjct: 7 VTQTIVLVDDDSNILTSLSFALETEGYRVESYTDGSAALKNLTVNPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + D+ V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDIPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLLTIKN 122 V +L N Sbjct: 119 VKAVLRRSN 127 >gi|307824780|ref|ZP_07655003.1| response regulator receiver protein [Methylobacter tundripaludum SV96] gi|307734138|gb|EFO04992.1| response regulator receiver protein [Methylobacter tundripaludum SV96] Length = 239 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 1/112 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I + ED++D+R LI L +GY V + + Y ++ P +++ D+ +P G++ Sbjct: 11 RIAVVEDEEDLRLSLIGYLASSGYRVWGAESAEAFYKQLLVAPVEVVILDVGLPGESGLQ 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +AR EL +K + ++G +V + ++ L KP +R+LV + Sbjct: 71 VARHLRELG-GIKTIMLSGRGSVDDRVEGLNQGASRYLVKPVDMRELVANIQ 121 >gi|302539959|ref|ZP_07292301.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457577|gb|EFL20670.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1149 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ D+R +L LG+ ++V+ +G +A D P L+LTD++MP +DG Sbjct: 642 RLLVADDNADVRSYLGDLLGRE-HDVLLAADGRAALDTALAHPVDLVLTDVMMPRLDGFG 700 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L R RA L ++ +T A L+KPF R L+ V+ Sbjct: 701 LVRALRADPRTTRLPIIMLTARAGEESTVRGLGAGADDYLAKPFSARQLLARVS 754 >gi|260771851|ref|ZP_05880769.1| putative transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14] gi|260613143|gb|EEX38344.1| putative transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14] Length = 215 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 1/105 (0%) Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73 M + L L GY+V+ ++G A ++ PF L+L D++MP+++G++ ARR + Sbjct: 1 MCQLLESVLVNEGYQVICAHDGEQALTQLASHPFDLVLLDVMMPKLNGLQAARRICQRFS 60 Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 VM I+ FA A D L+KPF + L+ + L Sbjct: 61 TPIVM-ISAFADEAAKIDGYEAGADHYLTKPFSIPKLLTLIKATL 104 >gi|260778812|ref|ZP_05887704.1| probable transcriptional regulator SyrB [Vibrio coralliilyticus ATCC BAA-450] gi|260604976|gb|EEX31271.1| probable transcriptional regulator SyrB [Vibrio coralliilyticus ATCC BAA-450] Length = 221 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD ++ L+ L GY+V S + G SA + ++P L+L D+++P+++G++ Sbjct: 3 RILVVDDDIELCALLVDVLSAEGYQVESVHCGESALQYIEKKPVDLVLLDVMLPKLNGMQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A+R + ++ +T A D + ++KPF + +L+ + + Sbjct: 63 VAKRICQRFAT-PILMLTALNDEASMLDGYQAGADQYIAKPFKVPELLTRIKAIF 116 >gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 229 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+A+DD ++ L L GYE V +G A K+R P LL+ DI+MPEMDG+ Sbjct: 2 KILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMDGM 61 Query: 63 ELAR 66 ++ + Sbjct: 62 QVVK 65 >gi|297582881|ref|YP_003698661.1| putative two component sigma54 specific transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141338|gb|ADH98095.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Bacillus selenitireducens MLS10] Length = 419 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+A+D+ D+R L+ L + G+EV +G A +++E + L + DI M MDG+ Sbjct: 2 ERILVADDEQDLRELLVSRLKRKGFEVFGAADGEEALALLQKERYDLGIFDIRMEPMDGL 61 Query: 63 ELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L PD ++V+ +TG + ++ L+KP++L +L +++ L Sbjct: 62 TLLEEVKS-RPDTLEMEVVMLTGHGTMETAIEAMKRGAYDYLTKPYNLSELEVVISKALE 120 Query: 120 IKN 122 K Sbjct: 121 KKK 123 >gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 568 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 5/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 ++LL +D ++R L K EVV+ +NG A +K+++ E + L+L D+ MP Sbjct: 433 RVLLVDDTQEIRTLFSYMLAKMQLEVVTASNGREAIEKIQQAEGQGELYDLILMDMQMPV 492 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG E R + + V+ IT + A + L KP L V+R L Sbjct: 493 MDGYEATRFLRSQNNPIPVIAITAHTLITDREKCIAAGCSDYLGKPVKFNVLSEMVSRYL 552 Query: 119 T 119 T Sbjct: 553 T 553 >gi|66044362|ref|YP_234203.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63255069|gb|AAY36165.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 245 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA ++P LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1691 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D +D R+ + L K+G+ + C +GA A D+ + E + L+L D++MP +DG Sbjct: 1562 RILAVDDAEDNRKLVQAFLAKSGHHLDLCEDGAQALDRFKREHYDLVLMDLLMPVLDGYG 1621 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 R+ + + + A AL+ + K L+KPF L++ + R+ Sbjct: 1622 ATRKIRQWEQQQHRLPTPIIALTALSVRRDLDKALACGCDFYLTKPFRKHQLLDAIYRI 1680 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++ +D R L + L + G++V +GA A+ ++E P L++TD MP ++G+ L Sbjct: 134 MMVVDDSRSARAVLGQFLQRYGFQVRLAQDGAEAWALLQETPVDLVVTDYEMPNLNGVAL 193 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R+ ++ +M ++ L D ++KP+ +L++ V ++ Sbjct: 194 TAKLRSRYSRDEMGIMGLSSAGQSELAVDFIKAGANDYINKPYEPEELISRVYQM 248 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 3/98 (3%) Query: 27 YEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGIELARR--ATELDPDLKVMFITGF 83 YE ++ +G A + +P ++L DI+MPEM+G E+ RR A E ++ V+F++ Sbjct: 1180 YERMAALSGPEALMLAQCDPAPDMVLLDIMMPEMNGYEVCRRLKAMEATQEIPVIFVSAK 1239 Query: 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 V + ++KP+H + ++ L +K Sbjct: 1240 KEVVDEAEGFLIGGVDYITKPYHGEVVRRRIHSQLELK 1277 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L + G V NG A D++ + L+L D+ MP MDG E Sbjct: 805 LLLVEDNPINQQVAAELLERVGLVVDIAENGQQALDRLARFEYDLVLMDLHMPVMDGSEA 864 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + RA E L V+ ++ D L KP L + R +T Sbjct: 865 MQRIRAQEAWRSLPVLALSTGTGEEEQLDLQDLGFQGFLHKPIRPERLYGALKRWIT 921 >gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1034 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ + L +EVV NG A ++ +E +L+L DI MP MDG+ Sbjct: 902 ILLAEDNEMTIDVVSDYLHYLNFEVVVARNGYEAIERAQEYRPALILIDIQMPVMDGLHA 961 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLL 118 R L P + I A+A+ D A + LSKP L LV + ++L Sbjct: 962 IRELRAL-PAFRTTPIIALTALAMQGDRERCLAAGANEYLSKPISLHGLVEVIQQIL 1017 >gi|326202327|ref|ZP_08192196.1| response regulator receiver protein [Clostridium papyrosolvens DSM 2782] gi|325987445|gb|EGD48272.1| response regulator receiver protein [Clostridium papyrosolvens DSM 2782] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 49/103 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D ++R L K L GYEV++ ++G A + F L DI +P + G Sbjct: 2 KKVLVVDDTKNIRMILTKCLELEGYEVLTASDGTQALELFMTHSFDLAFLDIKLPGVRGT 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E+ +R E V+ IT +A V D + KPF Sbjct: 62 EVLKRIREKGIKTPVIIITAYATVKNAVDCTNLGAVAYVQKPF 104 >gi|224437813|ref|ZP_03658760.1| hypothetical protein HcinC1_07565 [Helicobacter cinaedi CCUG 18818] gi|313144260|ref|ZP_07806453.1| response regulator [Helicobacter cinaedi CCUG 18818] gi|313129291|gb|EFR46908.1| response regulator [Helicobacter cinaedi CCUG 18818] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KILL EDD + L++ L + GY+V C+N A + E+ F L + D+ +P + Sbjct: 1 MSAKILLLEDDFVLSEILLEFLNEQGYDVKLCDNAKDALNCAYEQHFDLWIFDVKVPLGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++ + E + +FIT + L KPF L +L + LL Sbjct: 61 GFDILKELRECGKNTPSIFITSLDRIDDLQSGYKAGCDDYLKKPFELLELQYRIRTLL 118 >gi|218460679|ref|ZP_03500770.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli Kim 5] Length = 261 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGIELA 65 AEDD+ +R +++ L GY V+ + SA V LL TD+VMP + ELA Sbjct: 1 AEDDEGVRTTVVEMLSDLGYYVLKAKDAQSALTVVESGAHIDLLFTDVVMPGPLKSPELA 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R A PD+ V++ +G+ ++ ++LSKP+ +L ++ +L + Sbjct: 61 RMARARLPDIAVLYTSGYTEDSIVHGGRLDPGLELLSKPYTREELARKIRHVLATR 116 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R + L GY+V+ +G + D + +++ D+ +P M G Sbjct: 146 KLLLVEDDAFIRMDTAEILQDLGYDVIEAESGEAGADILGHTVVDIVVVDLGLPGMPGSA 205 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 A RA E P + ++F TG + + P +N + +L+KPF Sbjct: 206 FAARAREALPSVGLVFATGDSDL---PVANRLSGSVLLTKPF 244 >gi|253701352|ref|YP_003022541.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776202|gb|ACT18783.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 886 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +L +D+ + + L + G++VV+ +G+ A + ++ E +S ++ D+ MP +DG Sbjct: 771 VLFVDDEQTVLDIGSEMLKELGFDVVTAMDGSEALELFKQDAERYSFIILDLTMPRLDGE 830 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ EL P++KV+ +G+ +N + A + KP++L L + + + Sbjct: 831 QTYRQMRELKPEVKVIMSSGYNEQEINQRLGGTELAGFVQKPYNLSTLRDVIKNM 885 >gi|197123948|ref|YP_002135899.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] gi|196173797|gb|ACG74770.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] Length = 322 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + KIL+ +D +L++ L + GY+V + +G A KVR EP L+L D+++P+MD Sbjct: 3 LRAKILVVDDSRTQLDWLVRVLEREGYDVRTAADGKDAIRKVRGEPPDLVLLDMILPDMD 62 Query: 61 GIELAR 66 G+E+ R Sbjct: 63 GLEVLR 68 >gi|189424819|ref|YP_001951996.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] gi|189421078|gb|ACD95476.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] Length = 473 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 44/81 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD R L +AGY V + +G A +++ F L++TD+ MP + G+E Sbjct: 9 EILIVEDDRFFRELYADLLRQAGYSVTTACSGEEATEQLACSRFGLVVTDLTMPGISGLE 68 Query: 64 LARRATELDPDLKVMFITGFA 84 L + DP + V+ +T A Sbjct: 69 LLVKIKSQDPSIDVILVTANA 89 >gi|87309045|ref|ZP_01091183.1| sigma-54 dependent transcriptional regulator/response regulator [Blastopirellula marina DSM 3645] gi|87288388|gb|EAQ80284.1| sigma-54 dependent transcriptional regulator/response regulator [Blastopirellula marina DSM 3645] Length = 138 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 54/104 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+K+L +DD + R + + L AG+E++S + A + + + + DI MP ++ Sbjct: 1 MNKKVLHVDDDPQILRLVGRQLSSAGFEMISLDQPEKAMKTLLDSSIRVCILDIEMPRIN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 G++L + + D ++V+ +TG ++ DS L KP Sbjct: 61 GLDLLQDIKQYDGGIQVVMLTGLVTLSTVLDSMRYGAESCLFKP 104 >gi|116622463|ref|YP_824619.1| signal transduction histidine kinase nitrogen specific NtrB [Candidatus Solibacter usitatus Ellin6076] gi|116225625|gb|ABJ84334.1| signal transduction histidine kinase, nitrogen specific, NtrB [Candidatus Solibacter usitatus Ellin6076] Length = 933 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 IL+ ED+ +R + K L + G+ VV +G A + +E +L D+ +P + Sbjct: 812 ILVVEDEALLREAVSKVLRRVGFLVVEAGDGCDAIELLSAHKEDLQAVLLDVTLPGISSR 871 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 E+ + PDLKV+ + ++ ++ + + KPFHL D+V Sbjct: 872 EVLAEIRRVRPDLKVIVTSAYSKESVEASFTGLRTQGFIRKPFHLSDMV 920 >gi|323345601|ref|ZP_08085824.1| DNA-binding response regulator [Prevotella oralis ATCC 33269] gi|323093715|gb|EFZ36293.1| DNA-binding response regulator [Prevotella oralis ATCC 33269] Length = 232 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L Y V C +G Y + + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKDYTAVLCPDGEVGYKEFLKSKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV + +L Sbjct: 66 LAQEIRQANAEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVLRIEAIL 120 >gi|237725912|ref|ZP_04556393.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435720|gb|EEO45797.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1388 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR ++ L K Y++ NGA A ++ E L+++D++MP MDG Sbjct: 1138 ETILIVEDNADMRTYICSIL-KNNYQLKEAQNGAEALYLIQRETIDLIVSDLMMPVMDGN 1196 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL+R +A + + +T + A S + L KPF +EV L I Sbjct: 1197 ELSRQVKANLATSHIPFLMLTALRSEAQERISYEIGVDEYLCKPF------DEVILKLRI 1250 Query: 121 KN 122 +N Sbjct: 1251 RN 1252 >gi|212693985|ref|ZP_03302113.1| hypothetical protein BACDOR_03510 [Bacteroides dorei DSM 17855] gi|237710349|ref|ZP_04540830.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|265751157|ref|ZP_06087220.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|212663517|gb|EEB24091.1| hypothetical protein BACDOR_03510 [Bacteroides dorei DSM 17855] gi|229455811|gb|EEO61532.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|263238053|gb|EEZ23503.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1316 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ +M F+++ L Y++++ NG A + +L+++DI+MPEMDG+EL Sbjct: 1072 VLIVEDNVEMLAFVVRQLSPV-YQILTATNGVEALKVLEGHTVNLIVSDIMMPEMDGLEL 1130 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++LD + ++ +T + D + KPF + L V LL+ Sbjct: 1131 CDRIKSDLDYSHIPIVLLTAKTTLQSKIDGLKSGADAYIEKPFSVEYLKVSVANLLS 1187 >gi|218780010|ref|YP_002431328.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218761394|gb|ACL03860.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 417 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q +L+ +DD + + + G++V + N + +P++++L D MPE+D Sbjct: 1 MAQTMLIIDDDPAVLASCQRIFTEEGFQVTTTTNPLEGLELAAAKPYTVILCDWQMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R P+ V+ I+GF +V ++ +KPF ++ + V++ + Sbjct: 61 GLDVVARLENEAPESAVVMISGFPSVDRATEAMKRGAMDYQAKPFTPEEIASTVHKAIAN 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|126724600|ref|ZP_01740443.1| response regulator [Rhodobacterales bacterium HTCC2150] gi|126705764|gb|EBA04854.1| response regulator [Rhodobacterales bacterium HTCC2150] Length = 430 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 44/77 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D RR L +L +AGY+V +G A +E+ F+L+L+D +MP M+G++ Sbjct: 19 SVLVVDDSKGQRRILSASLKRAGYDVTEAASGEEAVLACQEKQFNLVLSDWIMPGMNGLD 78 Query: 64 LARRATELDPDLKVMFI 80 + E++ D FI Sbjct: 79 FCKAFREMERDTYGYFI 95 >gi|114777491|ref|ZP_01452488.1| two component sensor kinase/response regulator hybrid [Mariprofundus ferrooxydans PV-1] gi|114552273|gb|EAU54775.1| two component sensor kinase/response regulator hybrid [Mariprofundus ferrooxydans PV-1] Length = 125 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 7/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++K+LL +DD + + + + L G+ V S + A + + F LL+TDI MP M Sbjct: 9 SKKLLLVDDDQTVLKLMTEVLTDFGHCVTSVPSARHALNHFTSAGQAFDLLITDICMPGM 68 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSN--APKNAKVLSKPFHLRDLVNEVNRL 117 +G+EL + + L ++ I+GF+ D N A +A++L+KP + L ++ L Sbjct: 69 NGVELIKAVRAHNGTLPIIAISGFSE---PEDQNEIAHYDARMLTKPVDFQTLKQTIDAL 125 >gi|332885765|gb|EGK06011.1| hypothetical protein HMPREF9456_02275 [Dysgonomonas mossii DSM 22836] Length = 1304 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ D++ FL + + Y + + +NG A+ ++ + F L+L+DI+MPEM+G+EL Sbjct: 1060 VLLVEDNIDLQNFLACSF-RDQYNISTASNGVEAWAIIQSKSFDLILSDILMPEMNGLEL 1118 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + ++T + V+ +T A + ++KPF +R L ++ + IKN Sbjct: 1119 CKLVKSTFETSHIPVILLTSLAEKENLIEGLDLGADDYITKPFDIRILNYRISTI--IKN 1176 >gi|330957563|gb|EGH57823.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 692 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + GY + ++ S ++ + LL++DI +P M+ Sbjct: 564 ETVLVVDDEPSVRMLVTEVITGLGYTCLEASDAQSGLQILKSDARIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A E P L +FITG+A ++ + +VL+KPF L L V L+ Sbjct: 624 GREMADAACEYRPGLPTLFITGYAKTSVLDGCHLRPCTQVLTKPFGLDTLAGRVTGLI 681 >gi|323485879|ref|ZP_08091214.1| hypothetical protein HMPREF9474_02965 [Clostridium symbiosum WAL-14163] gi|323400867|gb|EGA93230.1| hypothetical protein HMPREF9474_02965 [Clostridium symbiosum WAL-14163] Length = 240 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD + R L L GYEV+S N SA K+RE F + L DI +P+ G+ Sbjct: 13 KKILIVEDDQLLNRTLAYNLTSDGYEVISVFNFDSAVRKLRENEFDVALLDINLPDGSGL 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 +L ++FIT A + +S+ K +V ++KPF + L +V Sbjct: 73 DLCEEIRNRGQHTYIIFIT-----ANDKESDMLKGYEVGGADYVTKPFSVTVLCKKV 124 >gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI+LA+D+ + +FL L GYEV + NG+ A D RE + + D++MPEM+G E Sbjct: 8 KIMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLAREFRPHVAVLDVMMPEMNGFE 67 Query: 64 LARRATELDPDLKVMFIT 81 + + E + ++ V+ +T Sbjct: 68 VCQSLKETEDNIAVIMLT 85 >gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 230 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L ++L GY+V +G A + + +E L++ D++MP MDG+E Sbjct: 2 KIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ D A +A L KPF L +L+ V LL Sbjct: 62 VCRTLRSAGDDRPILVLTARDGVS---DRVAGLDAGADDYLPKPFALEELLARVRSLL 116 >gi|266622889|ref|ZP_06115824.1| DNA-binding response regulator ArlR [Clostridium hathewayi DSM 13479] gi|288865351|gb|EFC97649.1| DNA-binding response regulator ArlR [Clostridium hathewayi DSM 13479] Length = 216 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 59/114 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AEDD +M++ L L + GY V ++G +A D + E P L+L D +MP +GI+ Sbjct: 2 KLLIAEDDPEMQKILKLYLQREGYLVNVVSDGRAAVDFLTEHPVDLVLLDWMMPVQNGIQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + L+ +KV+ +T + L KPF ++ L+ + +L Sbjct: 62 TLKEIRLLNIPVKVLMLTAKGENESEVTGLSCGADDYLRKPFDIQVLLLRIKKL 115 >gi|302878250|ref|YP_003846814.1| response regulator receiver protein [Gallionella capsiferriformans ES-2] gi|302581039|gb|ADL55050.1| response regulator receiver protein [Gallionella capsiferriformans ES-2] Length = 121 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L +D +R+ + L AGY V+ +G DK +++ L+LTD MP MD Sbjct: 1 MAKTVLSVDDSGSIRQMVSFTLKSAGYTVIEAVDGQDGLDKAKQKTVDLVLTDQNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + RA + ++ +T + A+ A + KPF + L+ V +++ Sbjct: 61 GLTLIKSLRAMPSYRSVPILMLTTESGDAMKAQGKAAGATGWIVKPFDPQKLLEVVKKVI 120 >gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1179 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 38/68 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ ++ I LGK G+ VV NNG A + F ++L D+ MPEM G+E Sbjct: 945 ILLAEDNRVNQKLAITLLGKWGHRVVLANNGIEAVEHAGRVDFDVILMDLQMPEMSGMEA 1004 Query: 65 ARRATELD 72 R E D Sbjct: 1005 TRLIREQD 1012 >gi|197295113|ref|YP_002153654.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944592|emb|CAR57196.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 450 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ ++ L + GY++ + ++G +A + + L+++D+ MP M G E Sbjct: 12 ILLVDDEPNVLSALRRVFRPTGYDIATADSGEAALEILASTDIDLIVSDMRMPHMSGAEF 71 Query: 65 ARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA L PD + +TG+A +A + N + L+KP+ DL+ + + L Sbjct: 72 LARARALYPDTMRILLTGYAEIASVVQAVNEGGVYRYLNKPWDDHDLLLTIEQAL 126 >gi|170750657|ref|YP_001756917.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170657179|gb|ACB26234.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1076 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 9/118 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 Q++L+ ED+ ++ RF + L GY N A D++ + F ++ +D+VMP M Sbjct: 950 QRVLVVEDNIEVGRFATQILEDLGYATTWAANAEEALDQLGADGAAFDVVFSDVVMPGMG 1009 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI LAR P L V+ +G++ V ++ ++L KP+ ++V+R+L Sbjct: 1010 GIALARLLRRRMPHLPVVLASGYSHVLAQ---EGIRDFELLHKPYS----ADQVSRVL 1060 >gi|149921398|ref|ZP_01909851.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149817718|gb|EDM77183.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 477 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R L + L +EV S +G A ++ +++TD+ MP M+GI Sbjct: 11 RILVVDDESSARSALTELLRDENFEVQSAGDGFKALGRLDNFTPDVVITDLKMPGMNGIA 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E P++ V+ +T F V ++ L+KP HL L+ V R+L Sbjct: 71 LMEKVRERLPEVPVVVMTAFGTVESAVEAIQQGADDYLTKPLHLGQLLVVVERVL 125 >gi|149277238|ref|ZP_01883380.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149232115|gb|EDM37492.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 231 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL EDD ++ L L K ++VV C +G ++ F L + D++MP+ DG Sbjct: 4 ILLVEDDPNLGLLLQDYLQLKGKFDVVLCMDGDEGLKAFSKQDFDLCILDVMMPKKDGFT 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + +L+ + ++F T A + + ++KPF + +L+ +N LL Sbjct: 64 LGKEIRKLNQQVPIIFATAKAMIEDKASAYDLGGDDYITKPFRIEELLLRINALL 118 >gi|170723287|ref|YP_001750975.1| CheA signal transduction histidine kinase [Pseudomonas putida W619] gi|169761290|gb|ACA74606.1| CheA signal transduction histidine kinase [Pseudomonas putida W619] Length = 755 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ +D +R K L G+EV +G ++ +R E F LL+TDI MP MDG Sbjct: 631 SKRILVVDDSLTVRELQRKLLSNRGFEVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDG 690 Query: 62 IE---LARRATELDPDLKVMFIT 81 IE L RR L L VM ++ Sbjct: 691 IELVTLVRRDQRLQ-SLPVMVVS 712 >gi|194336407|ref|YP_002018201.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelodictyon phaeoclathratiforme BU-1] gi|194308884|gb|ACF43584.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelodictyon phaeoclathratiforme BU-1] Length = 452 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 53/110 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ ED+ + L K GY V++ + A RE ++LTD MP M Sbjct: 1 MSHTILVVEDEKVQLESIAGYLSKQGYHVLTSSRPVEALVIAREHAVDIVLTDFKMPAMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+EL +L+P ++V+ +T + ++ ++ ++KP L L Sbjct: 61 GVELLDALKKLNPGIEVIIMTAYGSIESATEAMKLGAVDYITKPIDLCQL 110 >gi|319406454|emb|CBI80094.1| transcriptional regulator BatR [Bartonella sp. 1-1C] Length = 240 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +G++A + P L + DI MP MD Sbjct: 7 VTQTIVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + DL V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLLTIKN 122 V +L N Sbjct: 119 VKAVLRRSN 127 >gi|304391317|ref|ZP_07373261.1| protein PetR [Ahrensia sp. R2A130] gi|303296673|gb|EFL91029.1| protein PetR [Ahrensia sp. R2A130] Length = 246 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R L + L + G+ V S ++ + A +++ F LL+ D++MP G + Sbjct: 27 ILVVDDDSRIRELLTRYLAEQGFRVSSASDASEARRQLQGLSFDLLIVDVMMPGERGTDF 86 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E D D+ VM +T L+KPF R+L+ +N +L Sbjct: 87 TRSIRE-DLDVPVMMLTALGETDSRIAGLEAGADDYLAKPFSPRELLLRINAIL 139 >gi|302341501|ref|YP_003806030.1| response regulator receiver sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638114|gb|ADK83436.1| response regulator receiver sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 395 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 55/112 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ D R L + L K G + V +G +A + + F ++ D+ MP +DG++ Sbjct: 10 VLLVDDEADFRGPLARRLAKRGIDSVEAGSGQAALELFADRQFDAVILDVKMPGLDGLQT 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + PDL+V+ +TG A+ A L+KP + L ++ + Sbjct: 70 MAAIKKRQPDLEVILLTGQASAADGVAGIKAGAFDYLTKPVEIEQLAGKIRQ 121 >gi|301308087|ref|ZP_07214041.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 20_3] gi|300833557|gb|EFK64173.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 20_3] Length = 1369 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +L ED++D+ R+L+ A + Y VV NG +K E ++++D++MP M+ Sbjct: 1104 LRQTLLFVEDNEDLCRYLMNAF-QTDYRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMN 1162 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE A + E + V+ +T A + L KPF L L ++ LL Sbjct: 1163 GIECCEALKMDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLL 1222 >gi|212692707|ref|ZP_03300835.1| hypothetical protein BACDOR_02205 [Bacteroides dorei DSM 17855] gi|237709401|ref|ZP_04539882.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|265754601|ref|ZP_06089653.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212664785|gb|EEB25357.1| hypothetical protein BACDOR_02205 [Bacteroides dorei DSM 17855] gi|229456457|gb|EEO62178.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263234715|gb|EEZ20283.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 54/108 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + + L + + + + NG K E+ +L+ D++MP MDG E Sbjct: 5 RVLLVEDEQTLAMIIKDTLEEQEFIITTAGNGEEGLRKFFEQKPDVLVADVMMPRMDGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + RR + D ++F+T +A+ + L KPF +++L+ Sbjct: 65 MVRRIRQSDKVTPILFLTARSAINDVVEGFELGANDYLKKPFGMQELI 112 >gi|163757498|ref|ZP_02164587.1| two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162285000|gb|EDQ35282.1| two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 243 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I L +DD ++ + AL GY V + +GASA D + P L + DI MP MDG+ Sbjct: 8 QTIALVDDDRNILTSVSIALETEGYRVETYTDGASALDGLLARPPQLAIFDIKMPRMDGM 67 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL RR + D+ V+F+T + + D ++KPF R LV V Sbjct: 68 ELLRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVK 119 Query: 116 RLL 118 ++ Sbjct: 120 AVM 122 >gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA----YDKVREEPFSLLLTDIVMPEM 59 KIL+ +D+ MR+ + LG+ GY+V+ +G A YD E+ +L++ D++MP M Sbjct: 5 KILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYD---EKDIALIILDVMMPRM 61 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG ++ R + + ++ +T + A + +SKPF + LV VN +L Sbjct: 62 DGWQVCREVRQ-SSKVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILR 120 Query: 120 IKN 122 N Sbjct: 121 RAN 123 >gi|90422121|ref|YP_530491.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104135|gb|ABD86172.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 233 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY +++ +GASA D R P L + DI MP MDG+E Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDGMET 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIRKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|319403541|emb|CBI77122.1| transcriptional regulator BatR [Bartonella rochalimae ATCC BAA-1498] Length = 240 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +G++A + P L + DI MP MD Sbjct: 7 VTQTIVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTLHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + DL V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLLTIKN 122 V +L N Sbjct: 119 VKAVLRRSN 127 >gi|319787130|ref|YP_004146605.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudoxanthomonas suwonensis 11-1] gi|317465642|gb|ADV27374.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudoxanthomonas suwonensis 11-1] Length = 574 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q +LL +D++++ R L++ + GY +++ N A+D + ++L+D M +M G Sbjct: 445 DQTLLLVDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLATNEVQVILSDQRMSDMSG 504 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFH---LRDLVNEVNR 116 E R L PD M ++G+ +A D+ N + L+KP++ LR+ + + R Sbjct: 505 TEFLGRVKTLYPDTVRMVLSGYTDLATVTDAINRGAIYRFLTKPWNDDELREHIRQAFR 563 >gi|265751207|ref|ZP_06087270.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263238103|gb|EEZ23553.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1413 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD D+R+FL LG +E++S +G S K + L++ D++MP M+G Sbjct: 1165 KRILIIEDDGDVRKFLETELG-IYFEIISEPDGLSGLQKAQSFEVDLIICDVLMPGMNGF 1223 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 ++ R+ L D + I A++ N + + ++KPF R L+ + +L Sbjct: 1224 DVTRK---LKRDFETSHIPIILLTAMSTSENKLEGVESGADAYITKPFSSRLLLARIFQL 1280 Query: 118 L 118 + Sbjct: 1281 I 1281 >gi|262282261|ref|ZP_06060029.1| two-component response transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261552|gb|EEY80250.1| two-component response transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 244 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED+ +R+ + + + G +V+S NG A+ K ++ P +LLTDI MP+M+G Sbjct: 4 IMIVEDEYLVRQGIASLVNYEQFGMQVISQAENGIEAWQKFQDNPADILLTDINMPQMNG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 +EL++ + P ++F+TG+ Sbjct: 64 LELSKLVRDQAPKCHIVFLTGY 85 >gi|167909712|ref|ZP_02496803.1| DNA-binding response regulator [Burkholderia pseudomallei 112] Length = 246 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 5 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 65 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 118 >gi|152990350|ref|YP_001356072.1| chemotactic response regulator CheY [Nitratiruptor sp. SB155-2] gi|151422211|dbj|BAF69715.1| chemotactic response regulator CheY [Nitratiruptor sp. SB155-2] Length = 132 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 15/130 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N KIL+ +D +RR L AL + GYE V +G A K+R + ++TD MP M Sbjct: 7 NIKILVVDDAPTIRRILKNALKEMGYENVDEAEDGQVALQKLRSGNYQFVITDWNMPNMT 66 Query: 61 GIELARRATELDPDLK---VMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVN 112 GIEL + + DP LK ++ +T A +AL N + KPF + L Sbjct: 67 GIELVQEIRK-DPKLKHLPILMVTAEAKKENIILALKSGVN-----NYIVKPFTPKVLKE 120 Query: 113 EVNRLLTIKN 122 +++ + T KN Sbjct: 121 KISAIFTQKN 130 >gi|134291870|ref|YP_001115639.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia vietnamiensis G4] gi|134135059|gb|ABO59384.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia vietnamiensis G4] Length = 481 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ ++ L + L A YEV++ ++G +A + + L+++D+ MP M G Sbjct: 40 ILLVDDEPNVLSALRRVLRPANYEVLTADSGEAALEILATTEVDLIVSDMRMPTMSGAAF 99 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 RRA L P+ + +TG++ +A ++ N + L+KP+ +DL+ + + L Sbjct: 100 LRRARALYPETMRVLLTGYSDIASIVEAVNEGGVYRYLNKPWDDQDLLMTLEQAL 154 >gi|34498344|ref|NP_902559.1| chemotaxis regulator protein [Chromobacterium violaceum ATCC 12472] gi|34104198|gb|AAQ60557.1| probable chemotaxis regulator protein [Chromobacterium violaceum ATCC 12472] Length = 125 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS--AYDKVREEPFSLLLTDIVMPEMDGI 62 +L+ +D R + + L K G+E C +S A + +EPF L++TD MP MDG+ Sbjct: 6 VLIVDDSSTSRHHIRQVLEKLGFEHF-CEAASSEAAIPYLEQEPFKLIITDYHMPGMDGL 64 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + AR R++ L PD V+ IT + D A KPF + L + LL Sbjct: 65 DFARHVRSSGLQPDAPVLMITSDSDNINKDDLEDAGIAACCQKPFDMDKLRELIRTLL 122 >gi|319956246|ref|YP_004167509.1| two component transcriptional regulator, winged helix family [Nitratifractor salsuginis DSM 16511] gi|319418650|gb|ADV45760.1| two component transcriptional regulator, winged helix family [Nitratifractor salsuginis DSM 16511] Length = 229 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 54/119 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD L L + G+ V C + SA+D +EPF L L DI +P +G+E Sbjct: 8 KILLLEDDRLYSETLCDWLEEEGFAVHPCYDPQSAFDVCYQEPFDLYLFDINLPFQNGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R+ E V+F+T A + A L KP L +L V L KN Sbjct: 68 TFRQLRESGDRTPVIFLTSREDKASLLEGFAIGADDYLRKPVDLDELSARVRAALRRKN 126 >gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563] Length = 235 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+ ++ RF+ L GYE +G +K +E + L+L D+++PE++GI Sbjct: 7 KRILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLMLPEINGI 66 Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR L P D+ ++ +T +V + KPF + +L+ + LL Sbjct: 67 EVCRR---LRPTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALL 121 >gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067] gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 59/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD +R+ + L + G+ V+ +G +A V + L + D++MP+MDG Sbjct: 2 KQILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLMMPKMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ P++ V+ +T A+ ++KPF +LV + LL Sbjct: 62 ELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALL 117 >gi|262199148|ref|YP_003270357.1| Fis family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082495|gb|ACY18464.1| two component, sigma54 specific, transcriptional regulator, Fis family [Haliangium ochraceum DSM 14365] Length = 459 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 IL+ +D++ +R L + + G+EV++ +G + RE P ++TD+ M MDG+ Sbjct: 4 ILIIDDNETIREGLAHTISRMGHEVLTAASGREGLARFRERPETGFVITDLKMDGMDGVA 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + R +E P++ M IT + V ++ L+KPF Sbjct: 64 VLRALSEDAPEVPTMIITAYGTVETAVEAMKLGAFDFLTKPF 105 >gi|212695327|ref|ZP_03303455.1| hypothetical protein BACDOR_04872 [Bacteroides dorei DSM 17855] gi|212662237|gb|EEB22811.1| hypothetical protein BACDOR_04872 [Bacteroides dorei DSM 17855] Length = 247 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD ++ + L GYEV++ +NG +E+ ++++DI MP MDG Sbjct: 17 KLLLVEDDTNLCYIIRGGLEDMIGGYEVMTASNGEEGLRIWKEQHPDIIISDIEMPVMDG 76 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ RR E D + ++F +G + + KPF +L + LL +K Sbjct: 77 YEMVRRIRETDGFIPIVFTSGRVSPKDVVKGYELGVNNYIKKPFLAEELDAHIGALLKMK 136 Query: 122 N 122 Sbjct: 137 Q 137 >gi|206889401|ref|YP_002249293.1| FrgC [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741339|gb|ACI20396.1| FrgC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 430 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++ + EDD FL L + GY+V ++ +A + L++TD+ MP+MDGI+ Sbjct: 6 RVAIVEDDTSFASFLRTILEEEGYDVAVFHDPETALKNILNFSPILIITDLKMPKMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLLTIK 121 +A E+ P + + IT F ++ ++ ++KP DL+ V + LT K Sbjct: 66 FIEKAKEILPHTEFIVITAFGSIPSAVEAIKKGAIDYITKPLPSPEDLLERVKKFLTKK 124 >gi|126731908|ref|ZP_01747712.1| two component response regulator [Sagittula stellata E-37] gi|126707735|gb|EBA06797.1| two component response regulator [Sagittula stellata E-37] Length = 226 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 52/114 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD ++ K L + G+ V +G A L + D +MP MDG+ Sbjct: 2 KILLAEDDPKSADYICKGLKEQGFVVDWVADGREALTYCLYNDADLAIVDRMMPGMDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + +L V+F+T + V D L KPFHL +L+ + L Sbjct: 62 LVKALRAAKSNLPVIFLTALSDVDDRVDGLMAGGDDYLVKPFHLSELLARITVL 115 >gi|116073301|ref|ZP_01470563.1| putative two-component system response regulator [Synechococcus sp. RS9916] gi|116068606|gb|EAU74358.1| putative two-component system response regulator [Synechococcus sp. RS9916] Length = 236 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 59/112 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD ++ +FL + L AG+ ++ +G A ++R++ F+L++ D +P+ +GIE Sbjct: 7 QLLLVDDDPELLQFLREELEGAGHGCIAVASGQDALLQLRQQAFALVVLDWGLPDFNGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + RR V+ +T A+ + L+KPF L +L V Sbjct: 67 ICRRLRSSGDTTPVLMLTAHDALDERVAALDAGADDFLTKPFELEELHARVR 118 >gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp. subtilis str. 168] gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp. subtilis str. 168] gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ykoG gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis] gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp. subtilis str. 168] gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto BEST195] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED++ + R L L GY V +NG D E +SL+L D+++P + G+E+ Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 RR + D V+ +T ++ PD + ++KPF + +L+ + Sbjct: 66 LRRLRKTDSQTPVILLTARDSI---PDKVTGLDIGANDYVTKPFEIEELLARI 115 >gi|90422066|ref|YP_530436.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90104080|gb|ABD86117.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 1050 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EM 59 N+ IL+ EDD +R ++ L GY ++ N A+A E F LL TDIVMP +M Sbjct: 921 NETILIVEDDAMVRNYVTAQLKGLGYTTLAAPNAAAALALSAEGASFDLLFTDIVMPGKM 980 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G++LA + P LKV++ +G++ A+ ++ + +L+KP+ L V L+ Sbjct: 981 NGVQLAAEMAKQHPSLKVLYTSGYSENAVIHNNRLDPDILLLTKPYRRTALARMVRLALS 1040 >gi|78187094|ref|YP_375137.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78166996|gb|ABB24094.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 578 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62 ILL +D+D +R + L G+ V+ N A + + ++LLTD+VMP M+G Sbjct: 462 ILLVDDEDAVRHITRRFLESIGFRVLDAENADEALARAEQHHGEIAMLLTDMVMPGMNGR 521 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA + + LK +F++G+AA A D+ A L KPF L +++ +L Sbjct: 522 ELAEKLSRARAGLKTLFMSGYAADAFA-DAEAGAELHFLGKPFSRDALTSKIREVL 576 >gi|17231163|ref|NP_487711.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132804|dbj|BAB75370.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 407 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 4 KILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D D FLIK L + GY V + NG SA +++ P L+L D++MP MDG Sbjct: 24 KILVVDDSPD-NVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGMDGY 82 Query: 63 ELARRA---TELDPDLKVMFITGFAA--VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E+ RR +L + ++ IT A VA D A + KP + +L+ V L Sbjct: 83 EVTRRVRGEMKLPQYIPILLITAHDAPNVAHGLDLGAD---DFIRKPVTVDELLARVRSL 139 Query: 118 LTIKN 122 L +K+ Sbjct: 140 LRLKH 144 >gi|118399|sp|P10046|DCTD_RHILE RecName: Full=C4-dicarboxylate transport transcriptional regulatory protein dctD gi|46180|emb|CAA77620.1| C4-dicarboxylate transport transcriptional regulatory protein [Rhizobium leguminosarum] gi|46183|emb|CAA29596.1| unnamed protein product [Rhizobium leguminosarum] Length = 448 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+RR + L AG+ V + + +A + + ++TDI MPE+DG++L Sbjct: 7 VALIDDDKDLRRATAQTLELAGFSVSAYDGAKAALADLPADFAGPVVTDIRMPEIDGLQL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +D DL V+ +TG + + + ++KPF LV V R Sbjct: 67 FATLQGMDVDLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSVRR 118 >gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 247 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G++V S +GA+A RE ++ DI++P++DG+ Sbjct: 23 RVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGLS 82 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R PD+ V+F+T AV ++KPF L ++V + L+ Sbjct: 83 LLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLI 137 >gi|297538822|ref|YP_003674591.1| CheA signal transduction histidine kinase [Methylotenera sp. 301] gi|297258169|gb|ADI30014.1| CheA signal transduction histidine kinase [Methylotenera sp. 301] Length = 1701 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 3 QKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+ L DD MR+ L + L + +EV++ N+G A K++ ++LTDI MP MDG Sbjct: 1581 KKVALVVDDSLTMRKVLSRVLEREDFEVITANDGMDAIQKLQLITPDIILTDIEMPRMDG 1640 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E +R + D + I ++ N K V L KP +L+ +VN LL Sbjct: 1641 FEFSRHVRDNDKTANIPLIV-ISSRTAEKHRNVAKELGVNAFLGKPVQDDELIEQVNALL 1699 >gi|171317409|ref|ZP_02906602.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5] gi|171097426|gb|EDT42267.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5] Length = 860 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 1/106 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ +LL +DD ++ L +ALG+ GYE++ + A + + ++++D MP + Sbjct: 704 LHRTLLLVDDDREVLHMLRRALGRDGYEILDTTDPDEALVLLAQHRVGVIVSDFRMPSLS 763 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPF 105 GI+L +R L PD+ + ++G+ A D+ + K+L KP+ Sbjct: 764 GIDLLQRVKMLYPDIVRILLSGYGEGASIADAAGHGSVQKLLIKPW 809 >gi|150004764|ref|YP_001299508.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|294775194|ref|ZP_06740720.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|149933188|gb|ABR39886.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|294451006|gb|EFG19480.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1316 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ +M F+++ L Y++++ NG A + +L+++DI+MPEMDG+EL Sbjct: 1072 VLIVEDNVEMLAFVVRQLSPV-YQILTATNGVEALKVLEGHTVNLIVSDIMMPEMDGLEL 1130 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R ++LD + ++ +T + D + KPF + L V LL+ Sbjct: 1131 CDRIKSDLDYSHIPIVLLTAKTTLQSKIDGLKSGADAYIEKPFSVEYLKVSVANLLS 1187 >gi|110641175|ref|YP_668905.1| hybrid sensory histidine kinase TorS [Escherichia coli 536] gi|110342767|gb|ABG69004.1| sensor protein TorS [Escherichia coli 536] Length = 910 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF++ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNSSGAQVVAVGNAAQALETLQNSEPFAVALVDFDLPDIDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|94265379|ref|ZP_01289133.1| PAS [delta proteobacterium MLMS-1] gi|93454132|gb|EAT04461.1| PAS [delta proteobacterium MLMS-1] Length = 794 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPE 58 N+ ILL ED+ +R + L GY V + + +A + +R+ F LLLTD MP+ Sbjct: 670 NEHILLVEDEAVVREAMAAGLIDLGYRVSTAADAFAALELLRQNGGAEFDLLLTDYSMPK 729 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G ELA A + DL V+ TG+++ + A + ++ KP L E+ R+L Sbjct: 730 LKGTELAAAARVVRADLPVILCTGYSSKIDESAAMALGISALVMKPPGREALAREIRRVL 789 >gi|6448582|emb|CAB61240.1| virulence protein S [Klebsiella pneumoniae] Length = 1218 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 8/118 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++A+D+ R L + L GY V +G A+ ++ + LL+TD+ MP MDG+ Sbjct: 960 RVIIADDNPTNRLLLRRQLDILGYYVDDVEDGEQAFSLIKRRQYDLLITDLNMPGMDGLT 1019 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK----VLSKPFHLRDLVNEVNRL 117 LA++ +++P L + +T A PD A A L KP +L L N + Sbjct: 1020 LAQQVRKINPALVIWGLTANA----QPDEKARCLASGMDLCLIKPVNLPQLAAAFNSI 1073 >gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC 14580] gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580] gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2] gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC 14580] gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2] Length = 233 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ + L L G+E + NNG+S K+ + LLL D ++P+ G++ Sbjct: 5 KILIIEDDEAIADLLSYGLTSEGFETCTVNNGSSGMRKLDQFKPDLLLLDWMLPDCSGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ TE ++ ++ IT + + ++KPF LR++V + +L Sbjct: 65 ICKKVTE-SCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTIL 118 >gi|29347144|ref|NP_810647.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339043|gb|AAO76841.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1346 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+IL+ ED+D++R +L + L + Y V +C NG A + E L+++DI+MPEM G Sbjct: 1068 HQRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRG 1126 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + +++ I ALN + + ++ + KPF++ L V+ Sbjct: 1127 DEL---CDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSN 1183 Query: 117 LL 118 LL Sbjct: 1184 LL 1185 >gi|27367859|ref|NP_763386.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio vulnificus CMCP6] gi|27359432|gb|AAO08376.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio vulnificus CMCP6] Length = 1217 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 K+L+AED+ + + + G + NNG A + +++ +LLLTD MPEMDG Sbjct: 995 KVLVAEDNKINQHIVKMQFAELGLTPIVVNNGVEALNYMKQHGDVALLLTDFHMPEMDGY 1054 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 EL R RA E L V+ +T + N S ++L KP+ L+ L Sbjct: 1055 ELVRTLRANERFATLPVVGVTAEDSRIANEKSMQSGINEILYKPYDLKQL 1104 >gi|90422346|ref|YP_530716.1| acetoacetate metabolism regulatory protein AtoC [Rhodopseudomonas palustris BisB18] gi|90104360|gb|ABD86397.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris BisB18] Length = 460 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+ +R L LGK G V++ +GA A ++L DI MP M G++ Sbjct: 7 VLIVDDDEAIRHMLAAVLGKEGITVIAAADGAEAVTLFGLHRMPVVLMDIRMPRMSGMQA 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +LD V+ +T FA V + + KPF + +L V R L ++ Sbjct: 67 LAEIRKLDRSAAVILMTAFAEVETAVRAIKEGAFDYIIKPFDIAELKLLVGRALQMRG 124 >gi|113477455|ref|YP_723516.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168503|gb|ABG53043.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 230 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD R + L +GY VV +G A+D V + L++TDI MP+MD Sbjct: 1 MPLTILVVDDDLGTRLCISDYLEVSGYLVVKAEDGQQAFDIVEKSEPHLIITDIAMPKMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G EL +R P + V+F+T + L KPF L +L V L Sbjct: 61 GYELVKRV-RARPSFRLLPVIFLTAHISTQERVKGYQLGCDIYLPKPFELVELGAVVRSL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|327478827|gb|AEA82137.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 447 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +++ +D+ +R+ + + L +G++V + + A + + +L++D+ MP++D Sbjct: 1 MSGQVIFIDDEAAIRQAVQQWLELSGFQVRTFSRAREALSVLDRDFPGVLISDVRMPDLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R ELD DL V+ +TG V + + + KPF L++ V R + Sbjct: 61 GLGLLERLIELDADLPVIMVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRAM 118 >gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 228 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ D+ + L + GY V + NG A R+ L++ DI+MP+MDGIE Sbjct: 7 KILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARKINPDLIILDIMMPKMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R + P+ K F+ A + A N ++KP R L++ +N +L Sbjct: 67 ACRIMRSM-PEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAIL 123 >gi|301058155|ref|ZP_07199207.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300447787|gb|EFK11500.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 528 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ D+ +L + GY V+ G A K EP + L DI + +MDG ++ Sbjct: 413 VLLIEDEADVMEITHASLDRLGYRVIEAATGKEAIQKAGTEPIDVALLDIKLSDMDGAQV 472 Query: 65 ARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 PDLKV+ +G+ A L +N + KPF ++ L ++ +L Sbjct: 473 YPLLMTARPDLKVIVFSGYSLDSPAREILQAGANG-----FIQKPFSIKGLAEKMKEVL 526 >gi|317154345|ref|YP_004122393.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316944596|gb|ADU63647.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 132 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 7/121 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+AEDD ++ +K + G+ +G AY+ + F LL+TDI+MPEMDG Sbjct: 3 KILVAEDDRISQKLAVKIVEDLGHTAFVSPHGKHAYESLTASNRFDLLITDIMMPEMDGQ 62 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 +L + R + DL ++ ++ A V ++ SN K L+KP +L N + R L Sbjct: 63 QLIKTLRGDQQFMDLPIIIMS--AVVGMSEISNLLKLGATLFLAKPLDRDELQNYIRRCL 120 Query: 119 T 119 Sbjct: 121 V 121 >gi|291612732|ref|YP_003522889.1| LytTR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582844|gb|ADE10502.1| two component transcriptional regulator, LytTR family [Sideroxydans lithotrophicus ES-1] Length = 254 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 9/101 (8%) Query: 16 RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDL 75 +F ++ +G+A NG A DK+ E P ++L DI MP+MDGIELAR +LD Sbjct: 34 QFPLQLVGEAA-------NGRDALDKLAETPAEVVLMDIRMPQMDGIELARHLNKLDHPP 86 Query: 76 KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++F T + + A+ + + L KP L L + ++R Sbjct: 87 VIIFTTAYDSYAIQ--AFEQRAIDYLLKPIRLGRLFDALSR 125 >gi|325982306|ref|YP_004294708.1| response regulator receiver protein [Nitrosomonas sp. AL212] gi|325531825|gb|ADZ26546.1| response regulator receiver protein [Nitrosomonas sp. AL212] Length = 121 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + L AGYEV+ +G A+DK +L+LTDI MP MD Sbjct: 1 MAKTILAVDDSASIRQMVTFTLKSAGYEVIEAVDGQDAFDKASHHQINLILTDINMPRMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L +L + ++ +T + + A L KPF + L+ + +++ Sbjct: 61 GLKLLELLRKLAQYKNTPILILTTESGGEIKAKGRAAGATGWLVKPFDPKRLLEVIGKVI 120 >gi|254452735|ref|ZP_05066172.1| two component, sigma54 specific, transcriptional regulator, Fis family [Octadecabacter antarcticus 238] gi|198267141|gb|EDY91411.1| two component, sigma54 specific, transcriptional regulator, Fis family [Octadecabacter antarcticus 238] Length = 444 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A V ++ ++++DI MP MDG++ Sbjct: 6 KIAIVDDEQDMRQSISQWLALSGYDTETFASAEDALKGVGQDYPGIVVSDIKMPGMDGMQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNE--VNRLL 118 ++ +D L V+ ITG V + ++ L KPF+ + +L + V R L Sbjct: 66 FLKKLKGVDSSLPVIMITGHGDVPMAVEAMRIGAFDFLEKPFNPDRMTELAKKATVARRL 125 Query: 119 TIKN 122 T+ N Sbjct: 126 TLDN 129 >gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1492 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+AED+ D R L+ L GY+ VV+ NG A +K+ E F L+L D MP +DG Sbjct: 1369 RILVAEDNIDNRDLLVMLLEDIGYDNVVTVENGQEALNKINAELFDLILMDCQMPIVDGY 1428 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDL 110 E R+ + + + + A A+ D + A + ++KPF DL Sbjct: 1429 EATRKLRKQNSRNSSIPVIAITANAMKGDRDKCLAAGMSDYITKPFASDDL 1479 >gi|253702066|ref|YP_003023255.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251776916|gb|ACT19497.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 453 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GY+V + +G + E+ ++++TD+ MP Sbjct: 1 MPAKILVIDDDSSLRRVLEYNLQQEGYDVYTAADGDAGLQLFVEKSPAVVVTDLKMPGKS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ E P V+ +T F A+ ++ L+KPF+ +L V + L + Sbjct: 61 GFEVLSAIKESSPATVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKALQL 120 Query: 121 KN 122 + Sbjct: 121 QG 122 >gi|189463212|ref|ZP_03011997.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136] gi|189430191|gb|EDU99175.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136] Length = 1425 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+D++R F++ L K Y V+ NG +KV E ++++D++MPEMDGIEL Sbjct: 1157 ILVVEDNDELRHFIVHILQKE-YRVLEAPNGRIGLEKVLAEMPDVVVSDVMMPEMDGIEL 1215 >gi|91787693|ref|YP_548645.1| response regulator receiver domain-containing protein [Polaromonas sp. JS666] gi|91696918|gb|ABE43747.1| response regulator receiver domain protein (CheY-like) [Polaromonas sp. JS666] Length = 181 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLA+D R L++ + GY S NG A + + FSLLLTD MPEMDG EL Sbjct: 49 ILLADDHPTNRSLLMRQVNLLGYAAESARNGVEALNLWKSGRFSLLLTDCNMPEMDGYEL 108 Query: 65 AR--RATE 70 A+ RA E Sbjct: 109 AKAIRALE 116 >gi|86359114|ref|YP_471006.1| chemotaxis two-component response regulator protein [Rhizobium etli CFN 42] gi|86283216|gb|ABC92279.1| chemotaxis two-component response regulator protein [Rhizobium etli CFN 42] Length = 122 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R L AGY V NGA + F L++TD+ MP MD Sbjct: 1 MSANILTVDDSASIRLTTKVTLTNAGYSVTEAVNGAEGLAAAKSNSFDLIVTDLNMPVMD 60 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + +L + ++F+T + L + A L+KPF +LV V ++L Sbjct: 61 GLTMIEELRKLPAQAGVPIIFLTTESDADLKARAKAAGATGWLTKPFDPENLVKIVKKVL 120 >gi|66045153|ref|YP_234994.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae pv. syringae B728a] gi|63255860|gb|AAY36956.1| Response regulator receiver:Stage II sporulation E [Pseudomonas syringae pv. syringae B728a] gi|330973940|gb|EGH74006.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae pv. aceris str. M302273PT] Length = 394 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQIFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|86747589|ref|YP_484085.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|91974847|ref|YP_567506.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|86570617|gb|ABD05174.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] gi|91681303|gb|ABE37605.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 233 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY +++ +GASA D R P L + DI MP MDG+E Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDGMET 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIRKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|118581126|ref|YP_902376.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118503836|gb|ABL00319.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] Length = 629 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LL +D+ ++ R L + L + Y +V+ N + + E ++++D MP+M Sbjct: 496 MARTLLLVDDERNILRALKRLLAEEDYRIVTAGNACEGLELLARESIQVVISDQRMPDMS 555 Query: 61 GIELARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 G E R L PD + ++GF + + N + KVL+KP+ LR ++ + R Sbjct: 556 GTEFLRLVKALHPDTVRIILSGFVDLETVTKAVNEGEVYKVLTKPWDDGQLRKIIRDSFR 615 Query: 117 L 117 + Sbjct: 616 V 616 >gi|95929449|ref|ZP_01312192.1| response regulator receiver sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95134565|gb|EAT16221.1| response regulator receiver sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 397 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 61/120 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ + L GYEV + +G + E+P SL+L D +MP MDG Sbjct: 3 TEHILVIDDEKAILDLCRMILSSRGYEVRTAASGMEGLRLIAEQPPSLVLLDYMMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + ++ + PD+ V+ TG + + + + + KPF+ DL++ ++ +L + Sbjct: 63 MSVLKQIRQDYPDVYVIMFTGKGSETVAVEVMKAGASDYVLKPFNNHDLLDRIDSVLKFR 122 >gi|95928299|ref|ZP_01311047.1| CheA signal transduction histidine kinases [Desulfuromonas acetoxidans DSM 684] gi|95135570|gb|EAT17221.1| CheA signal transduction histidine kinases [Desulfuromonas acetoxidans DSM 684] Length = 779 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 6 LLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD R LIK L AGY V + +G A+ K+ F L+++D+ MP++DG L Sbjct: 663 ILAVDDSITSRMLIKNILEAAGYLVTTAIDGEDAFTKLTAGAFDLVVSDVEMPQLDGFGL 722 Query: 65 AR--RATELDPDLKVMFITGF-AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RATE ++ V+ +T +A A NA ++ + F +L++ + RL+ Sbjct: 723 TTRIRATESVQEIPVVLVTSLESAEDKEKGIVAGANAYIVKRSFDQSNLLDTIQRLI 779 >gi|330974665|gb|EGH74731.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 193 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ ILL +DD ++R L L +AG++V + +GA ++P LL+ D+++P+ D Sbjct: 4 VSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R R P + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|327192761|gb|EGE59694.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CNPAF512] Length = 644 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 18/126 (14%) Query: 6 LLAEDDDDMRRFLIKA--------------LGKAGYEVVSCNNGASAYDKVREEPFSLLL 51 L DDD RR I A L G+ V G A D +R+EP L++ Sbjct: 518 LPQRDDDAQRRLRIVAVDDDGLVLMNTTLMLEDLGHTVFEAMAGPEALDILRKEPVDLVI 577 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 D MP M G +LA P + ++ TG+A + +N P+ L KPF L Sbjct: 578 CDHAMPRMTGAQLAEAIRSEWPKMPIILATGYADLPDGAGANLPR----LGKPFSQAQLA 633 Query: 112 NEVNRL 117 + ++R+ Sbjct: 634 DAISRI 639 >gi|320540080|ref|ZP_08039735.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Serratia symbiotica str. Tucson] gi|320029746|gb|EFW11770.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Serratia symbiotica str. Tucson] Length = 444 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG +S NG + + + +LL+DI MP +DG+ L Sbjct: 6 VWIVDDDSSIRWVLERALAGAGVNCISFGNGDDVLEALATQTPDVLLSDIRMPGIDGLSL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R+ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LRQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|320160939|ref|YP_004174163.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994792|dbj|BAJ63563.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 228 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD + + + L +EV++ +G + E+ LL+ D ++P+MDGI L Sbjct: 11 ILLVEDDPAIIQLVALGLRMEKFEVITAIDGREGFQLFLEKKPDLLIVDWMLPKMDGITL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 R+ EL DL ++ IT AV + L KPFHL Sbjct: 71 CRKIRELS-DLPIIIITAKDAVQDRVEGLDTGADDYLVKPFHL 112 >gi|298387534|ref|ZP_06997086.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298259741|gb|EFI02613.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1346 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+IL+ ED+D++R +L + L + Y V +C NG A + E L+++DI+MPEM G Sbjct: 1068 HQRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRG 1126 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + +++ I ALN + + ++ + KPF++ L V+ Sbjct: 1127 DEL---CDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSN 1183 Query: 117 LL 118 LL Sbjct: 1184 LL 1185 >gi|294508451|ref|YP_003572509.1| response regulator [Salinibacter ruber M8] gi|294344779|emb|CBH25557.1| response regulator [Salinibacter ruber M8] Length = 522 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D+ D+ R + L + Y+V + NGA A D V++ PF ++L D MP M+G+E+ Sbjct: 6 ILWVDDEIDLLRSHVMFLEEKDYDVSTVANGADAVDLVQQRPFDVVLLDEQMPGMEGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P L V+ +T L + + + L+KP + ++ RLL Sbjct: 66 LDAIKDERPTLPVVLVTKSEEEDLMEAALGNRISDYLTKPVNPSQILLTCKRLL 119 >gi|253571881|ref|ZP_04849286.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251838478|gb|EES66564.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1346 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+IL+ ED+D++R +L + L + Y V +C NG A + E L+++DI+MPEM G Sbjct: 1068 HQRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRG 1126 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + +++ I ALN + + ++ + KPF++ L V+ Sbjct: 1127 DEL---CDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSN 1183 Query: 117 LL 118 LL Sbjct: 1184 LL 1185 >gi|284035840|ref|YP_003385770.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283815133|gb|ADB36971.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD + F+ K +EV +G + + + P+ +++ D+ +P ++G E Sbjct: 2 KLLVVEDDQKLASFISKGFEAEAFEVTIAPDGQAGWRLFQANPYDVVILDVNLPYLNGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L R + ++ V+ +T + + L KPF R+L+ V L Sbjct: 62 LCRYIRQQTNEVPVLLLTALDGLNDKAEGFGSGADDYLCKPFEFRELLWRVQAL 115 >gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 235 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 42/67 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ D++MP MDGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 AMRRIRE 71 >gi|150025871|ref|YP_001296697.1| two-component system response regulatory protein RprY [Flavobacterium psychrophilum JIP02/86] gi|149772412|emb|CAL43892.1| Two-component system response regulatory protein RprY [Flavobacterium psychrophilum JIP02/86] Length = 233 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 45/81 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KILL EDD + L L +EV NG ++K +++ + L + D++MP DG Sbjct: 4 NKKILLVEDDPNFGSILRDYLSMNDFEVTLAKNGMEGFEKFKKDNYDLCILDVMMPYKDG 63 Query: 62 IELARRATELDPDLKVMFITG 82 LA+ E + ++ ++F+T Sbjct: 64 YTLAKEIREKNKEVPIVFLTA 84 >gi|114562358|ref|YP_749871.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Shewanella frigidimarina NCIMB 400] gi|114333651|gb|ABI71033.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella frigidimarina NCIMB 400] Length = 449 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD D+R L+ L A Y+ V + A ++ F ++++D+ M + GI L Sbjct: 6 ILLVEDDADLREALLDTLMLAHYDCVDVGSAEEAILALKANHFDMVISDVQMDGIGGIGL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIKN 122 + P L V+ +T +A + N NA K V L+KPF L+N+V+R L +K Sbjct: 66 LGYLQQHQPKLPVLLMTAYATI--NSAVNAMKLGAVDYLAKPFAPEVLLNQVSRYLPLKQ 123 >gi|330501967|ref|YP_004378836.1| two-component response regulator PilR [Pseudomonas mendocina NK-01] gi|328916253|gb|AEB57084.1| two-component response regulator PilR [Pseudomonas mendocina NK-01] Length = 446 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+ L+ +D+ D+R L LG+ + S N A + + EPF L LTD+ +P+ G Sbjct: 3 RQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 ++L + + P + V IT + ++ +S L+KP LR+LV R+ Sbjct: 63 LDLVQHIQQRHPQVPVAMITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRI 121 >gi|312217907|emb|CBX97854.1| similar to two-component histidine kinase [Leptosphaeria maculans] Length = 1300 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1113 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1172 Query: 65 ARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + E + P V+ +T A V A + LSKP L+ + R T Sbjct: 1173 TAKIREWERENGIPSTSVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILRCAT 1232 Query: 120 I 120 + Sbjct: 1233 L 1233 >gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 982 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPE 58 + ILL ED++ R + L + G+ V + NGA A +KV + L+L D+ MP Sbjct: 859 GRHILLVEDNELNREIAQEILCEYGFRVDTAENGAVAVEKVSTAAPGSYDLVLMDVQMPV 918 Query: 59 MDGIELARRATEL-DPDLKVMFITGFAAVALNPD-SNAPKNAKV--LSKPFHLRDLVNEV 114 MDG R+ L DP L + I A A + D NA ++ LSKP + DLV E+ Sbjct: 919 MDGYTATRQIRALGDPALAKIPILAMTANAFDDDRRNALESGMTGFLSKPIVIGDLVQEL 978 Query: 115 NRLL 118 ++L Sbjct: 979 RKIL 982 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 K L+ +DD + + K L K G +G A + R+ + + + D +P+ Sbjct: 719 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDAYHAYIIDWRLPD 778 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 M+GIE+ R+ L+ D ++ +T + + ++ A SKP + DL Sbjct: 779 MNGIEVTRQIRSLNNDTPIIILTAYDWSDIEVEAKAAGVTAFCSKPMFMSDL 830 >gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 243 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ ED+ + R L L + G+EV + ++G++ +++ E + L+L D+++P M+ Sbjct: 1 MGQRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLPGMN 60 Query: 61 GIELARRATELDPDLKVMFIT---GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+++ R ++ +T G A V S A ++KPF + +L+ V + Sbjct: 61 GLDILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGAD---DYITKPFGVSELLARVTAV 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|301059308|ref|ZP_07200235.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300446537|gb|EFK10375.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 128 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ + D ++R + L + G V N A +R F ++TDI MP++DG Sbjct: 3 DASILVVDGDPEIREAIETVLRREGCRVTCEGNAEGALRILRSRSFDTVITDIRMPDIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVA----LNPDSNAPKNAKVLSKPFH-LRDLVNEVNR 116 ++ R ++D ++++ +TGF + + D A A LSKP + + +LV+ V R Sbjct: 63 LDFLDRVRDVDEHVEIIVLTGFTTIQNVIRVLRDVGA---ADYLSKPLNDMEELVSAVKR 119 Query: 117 LL 118 +L Sbjct: 120 VL 121 >gi|298244926|ref|ZP_06968732.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] gi|297552407|gb|EFH86272.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] Length = 121 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QK+L+ +D ++ L +G+EVV+ +G A++KV +E ++ D+V+P+ +G Sbjct: 3 GQKVLVVDDSWTELTMIVAPLRNSGFEVVTAVDGEEAFEKVFKERPQCIVLDVVLPKQNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---------VLSKPFHLRDLVN 112 ++ R+ LK M ++ + L N P + L+KPF +LV Sbjct: 63 FQVCRK-------LKSMEVSRHIPIILLTSKNTPLDRSWGLRQGADMYLTKPFKEEELVA 115 Query: 113 EVNRLL 118 V RL+ Sbjct: 116 SVRRLV 121 >gi|289667060|ref|ZP_06488135.1| two-component system response regulator PilR [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 386 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TDIARRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 124 >gi|265753066|ref|ZP_06088635.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236252|gb|EEZ21747.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1388 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR ++ L K Y++ NGA A ++ E L+++D++MP MDG Sbjct: 1138 ETILIVEDNADMRTYICSIL-KNNYQLKEAQNGAEALYLIQRETIDLIVSDLMMPVMDGN 1196 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL+R +A + + +T + A S + L KPF +EV L I Sbjct: 1197 ELSRQVKANLATSHIPFLMLTALRSEAQERISYEIGVDEYLCKPF------DEVILKLRI 1250 Query: 121 KN 122 +N Sbjct: 1251 RN 1252 >gi|262275800|ref|ZP_06053609.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262219608|gb|EEY70924.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1085 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ + + K L GY VV +G A R++PF+L++TD MP MDG EL Sbjct: 808 ILVAEDNITNQAVIEKQLTYLGYNVVMTADGLDALRAYRKQPFTLVITDCHMPNMDGYEL 867 Query: 65 ARRATELDPD 74 R E+ + Sbjct: 868 TRAIREVQKE 877 >gi|241664592|ref|YP_002982952.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240866619|gb|ACS64280.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 1436 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED R + K L GY V +G A +++ E F LLTD MP MDG +L Sbjct: 1182 ILVAEDHPINRELIAKQLRLLGYRVTLAEDGVVALERLHEHRFDALLTDCHMPRMDGFDL 1241 Query: 65 AR--RATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 AR R E D P L ++ IT + A L KP L L ++ L T Sbjct: 1242 ARHIRQEEGDGPRLPIIAITATTLAEEHARCRAVGMDASLLKPTTLATLQEALSALCT 1299 >gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] Length = 1935 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR- 66 AED+ + ++ L + G+ V NG A DK+ + F L+L D++MPEMDG E A+ Sbjct: 1818 AEDNKVNQLLAMELLRRKGHSVSLAENGREALDKLSVDSFDLVLMDVLMPEMDGDEAAKR 1877 Query: 67 -RATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTIK 121 RA E DP + ++ +T + AL D +A + LSKP L + + RL T Sbjct: 1878 IRAGEAGDPKIPIVALTAY---ALKGDREKLLDAGMDDYLSKPIDLEEFDQVLERLFTTN 1934 Query: 122 N 122 + Sbjct: 1935 D 1935 >gi|296536470|ref|ZP_06898565.1| chemotaxis histidine kinase CheA [Roseomonas cervicalis ATCC 49957] gi|296263214|gb|EFH09744.1| chemotaxis histidine kinase CheA [Roseomonas cervicalis ATCC 49957] Length = 686 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++LL ED R L+ L AGYEVV+ + G A ++RE+ F ++++DI MPE+D Sbjct: 563 KRVLLVEDSAFFRHLLVPGLTAAGYEVVAVDTGLQAL-QLREQGAMFDIIVSDIEMPELD 621 Query: 61 GIELARRATELDP 73 G+ LAR P Sbjct: 622 GMGLARAVRSEGP 634 >gi|282895678|ref|ZP_06303803.1| hypothetical protein CRD_00302 [Raphidiopsis brookii D9] gi|281199372|gb|EFA74237.1| hypothetical protein CRD_00302 [Raphidiopsis brookii D9] Length = 237 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 IL+ EDD + L +AL YEV +G +A+ ++++ P + L++ DI +P++DG Sbjct: 4 ILVVEDDYYLTESLTEALTMERYEVECVKDGEAAWRRLQDLPVVNYDLIIMDITLPKLDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I L ++ + L ++ +T ++ + KPF+L++L+ +V LL Sbjct: 64 IRLCQKLRDHGCTLPILMLTARDTISDKITGLDAGADSYMVKPFNLQELMAQVRALL 120 >gi|289578420|ref|YP_003477047.1| response regulator receiver protein [Thermoanaerobacter italicus Ab9] gi|297544696|ref|YP_003676998.1| response regulator receiver protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528133|gb|ADD02485.1| response regulator receiver protein [Thermoanaerobacter italicus Ab9] gi|296842471|gb|ADH60987.1| response regulator receiver protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 119 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI++ +D MR + + K VV NGA A +K +E L++ DI MPEMDGI Sbjct: 3 KIMIVDDAAFMRMMIKDIISKNNLGSVVEAENGAIAVEKYFQENPDLVIMDITMPEMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + DP+ K++ + A+ ++ + KPF +V + +LL Sbjct: 63 QAVKAIRAKDPNAKIIMCSAMGQQAMVIEAIQAGAKDFIVKPFQPDRVVEAIKKLL 118 >gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 228 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D++ F+ L GYE C NG D E + +L D+++PE++G+E Sbjct: 3 RILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELNGLE 62 Query: 64 LARR 67 + RR Sbjct: 63 VCRR 66 >gi|226228075|ref|YP_002762181.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091266|dbj|BAH39711.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 711 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++LL +DD+ +R + + L A EV + +G SA + +R +P + +++TD MP M G Sbjct: 590 RVLLVDDDEHVRDAVSRILRHADCEVEAHPSGTSALNVLRTDPTRYDVVITDFTMPGMSG 649 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +ELA L ++ ++G+ A ++A A VL KP + L+N + Sbjct: 650 LELAEAIQALPYAPPLIMVSGYLDDATTARAHALGIAHVLDKPVPRQLLMNTI 702 >gi|196229956|ref|ZP_03128820.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196226282|gb|EDY20788.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 134 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ + L + L AGYEV + +G + ++ + L+ D MPEM+G E Sbjct: 12 KVLVVDDEPTILFTLKRILEHAGYEVHTAQSGREGWQTFQQGQWDLVTLDRSMPEMNGEE 71 Query: 64 LARRATELDPDLKVMFITGF-AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A + P ++ ITGF AV +A +L KPF +L++ + +L Sbjct: 72 VAAEIRRVAPKTPIVLITGFTGAVVRTWLFDA-----ILGKPFRPAELLDHLRLVL 122 >gi|182415603|ref|YP_001820669.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177842817|gb|ACB77069.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 376 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 1 MNQKILLAEDDDDMR-RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q +L DD + + L + L + G +V + NG A D VR+ L+L D++MP+M Sbjct: 1 MPQPSILVVDDQPINVQLLKRKLEREGIQVTAAYNGLEALDLVRKTKPDLILLDVMMPDM 60 Query: 60 DGIELARR--ATELDPDLKVMFITG 82 DGIE+ +R A EL + ++FIT Sbjct: 61 DGIEVCQRLQADELTRSIPIIFITA 85 >gi|172038635|ref|YP_001805136.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700089|gb|ACB53070.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 377 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L + GY+V NG +A + + + L+L DI MP M+G E+ Sbjct: 8 ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIHQVAPDLILLDINMPSMNGYEV 67 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++ + DPD K ++FI+ V + ++KPF +++ + LTI+ Sbjct: 68 CQQLKD-DPDTKDIPIIFISALDDVLDKVKAFELGGVDYITKPFQAEEVIARIENQLTIQ 126 >gi|167718274|ref|ZP_02401510.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] Length = 162 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 5 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 65 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 118 >gi|148985244|ref|ZP_01818467.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147922442|gb|EDK73561.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|301799699|emb|CBW32264.1| response regulator protein [Streptococcus pneumoniae OXC141] Length = 245 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 17/120 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M IL+ ED+ +R+ L K + A Y+ + NG A++ ++++ ++LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++GI+LA E + ++F+TG+ +AV L D L KPF +D+ Sbjct: 61 HLNGIQLASLVRETYSQVHLVFLTGYDDFDYALSAVKLGVDD-------YLLKPFSRQDI 113 >gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum] gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R D ++ +T V+ L+KPF L +L+ V L+ Sbjct: 62 VCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLV 116 >gi|260060733|ref|YP_003193813.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2501] gi|88784863|gb|EAR16032.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2501] Length = 1455 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R L + L AGY+V NG +A D VR L++ D++MPE++G ++ Sbjct: 1259 ILVVDDDTPIRSLLRQELSDAGYQVKEAANGKAALDMVRISKPDLIILDVMMPEINGFDV 1318 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A + DP + I + V + L+KP L +EV+ LL Sbjct: 1319 A-AVLKNDPATMDIPIIILSIVQDKERGLRIGVDRYLTKPIDTEKLFHEVDELL 1371 >gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 13/124 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +LL +D++ + +F+ L + G+++++ G+ A +K E+ +L++ D ++PEM Sbjct: 1 MSHTLLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKAGEKKPALVVLDWMLPEMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 GIE+ R +L+ M G V A +++ +V ++KPF LR+L + Sbjct: 61 GIEVCR-------ELRKMSRMGIIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARI 113 Query: 115 NRLL 118 +L Sbjct: 114 RSVL 117 >gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ D+ RF+ L GY +G + K RE +L++ D+++P MDG+E+ Sbjct: 17 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 76 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ARR + ++ ++ +T AV + L KPF + +L+ V Sbjct: 77 ARRIRK-TSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVR 126 >gi|298291971|ref|YP_003693910.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928482|gb|ADH89291.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 853 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL+AED ++ L + GY V + NG AY+ +L++DIVMP MDG Sbjct: 11 NPRILIAEDSPTQAAQIVHFLSRRGYAVNAARNGEEAYELAVATQPDILISDIVMPGMDG 70 Query: 62 IELARR--ATELDPDLKVMFITGFA 84 EL RR AT D V+ +T + Sbjct: 71 YELCRRLKATPGLEDTPVILVTSLS 95 >gi|255012784|ref|ZP_05284910.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. 2_1_7] Length = 887 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDDD++R FL + L +++ + NG A + EE SL+++D++MPEM+G EL Sbjct: 640 ILITEDDDEVRGFLEREL-SLHFKIRTAANGKDALRVLEEEEISLVVSDVMMPEMNGFEL 698 Query: 65 AR 66 R Sbjct: 699 CR 700 >gi|237800106|ref|ZP_04588567.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022962|gb|EGI03019.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. oryzae str. 1_6] Length = 786 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++L+ +D +R K L GYEV +G ++ +R E F LL+TDI MP MD Sbjct: 661 LRKRVLVVDDSLTVRELERKLLVGRGYEVSVAVDGMDGWNALRAEDFDLLITDIDMPRMD 720 Query: 61 GIELA---RRATELDPDLKVMFIT 81 GIEL RR T L L VM ++ Sbjct: 721 GIELVTLLRRDTRLQ-SLPVMVVS 743 >gi|237710399|ref|ZP_04540880.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|237723928|ref|ZP_04554409.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229437754|gb|EEO47831.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] gi|229455861|gb|EEO61582.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1424 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD D+R+FL LG +E++S +G S K + L++ D++MP M+G Sbjct: 1176 KRILIIEDDGDVRKFLETELG-IYFEIISEPDGLSGLQKAQSFEVDLIICDVLMPGMNGF 1234 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 ++ R+ L D + I A++ N + + ++KPF R L+ + +L Sbjct: 1235 DVTRK---LKRDFETSHIPIILLTAMSTSENKLEGVESGADAYITKPFSSRLLLARIFQL 1291 Query: 118 L 118 + Sbjct: 1292 I 1292 >gi|212693941|ref|ZP_03302069.1| hypothetical protein BACDOR_03465 [Bacteroides dorei DSM 17855] gi|212663473|gb|EEB24047.1| hypothetical protein BACDOR_03465 [Bacteroides dorei DSM 17855] Length = 1447 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD D+R+FL LG +E++S +G S K + L++ D++MP M+G Sbjct: 1199 KRILIIEDDGDVRKFLETELG-IYFEIISEPDGLSGLQKAQSFEVDLIICDVLMPGMNGF 1257 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 ++ R+ L D + I A++ N + + ++KPF R L+ + +L Sbjct: 1258 DVTRK---LKRDFETSHIPIILLTAMSTSENKLEGVESGADAYITKPFSSRLLLARIFQL 1314 Query: 118 L 118 + Sbjct: 1315 I 1315 >gi|83718153|ref|YP_438928.1| response regulator [Burkholderia thailandensis E264] gi|83651978|gb|ABC36042.1| response regulator [Burkholderia thailandensis E264] Length = 476 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ D+ L + Y ++ N+G +A D + L+++D+ MP+M G E Sbjct: 41 VLLVDDEPDVLSSLKRTFRPKRYRMLCANSGEAALDLLAASEVDLIVSDLRMPQMSGAEF 100 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA+E PD + +TG++ + + N + L+KP+ DL+ V + L Sbjct: 101 LARASERHPDAMRILLTGYSEIDSAARAINEAGIYRYLTKPWDDHDLLLTVEQAL 155 >gi|115522846|ref|YP_779757.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516793|gb|ABJ04777.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 233 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY +++ +GASA D R P L + DI MP MDG+E Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDGMET 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIRKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH] Length = 247 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|332526423|ref|ZP_08402544.1| response regulator receiver protein [Rubrivivax benzoatilyticus JA2] gi|332110554|gb|EGJ10877.1| response regulator receiver protein [Rubrivivax benzoatilyticus JA2] Length = 130 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 36/67 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL ED D+RR + L GYEVV +G R P L+L D++MP MD Sbjct: 1 MAYTILSIEDQPDIRRLIRMTLEFKGYEVVEAGDGEEGLALARRSPPDLILLDVMMPGMD 60 Query: 61 GIELARR 67 G E+AR+ Sbjct: 61 GHEVARQ 67 >gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 240 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ ++R L +L AG++V + ++G +A E L++ D+++P++DG E Sbjct: 12 RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGFE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E + V+F+T V ++KPF L ++V + +L Sbjct: 72 VTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVL 126 >gi|291568215|dbj|BAI90487.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 394 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + R L + L + GY+V NG A V E L+L DI+MPE+DG ++ Sbjct: 13 ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAETPDLILLDIMMPELDGYQV 72 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 A+ + DP ++ ++F++ + + ++KPFH+++++ V LTI Sbjct: 73 AKYLKD-DPTTREIPIIFLSALSDTMDKVLAFDLGGVDYITKPFHVQEVLARVRTQLTI 130 >gi|258592053|emb|CBE68358.1| putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 455 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 54/102 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD D+R + L G+EVV ++G A ++REE ++ L D+ MP+ G+E Sbjct: 7 KILVVDDDTDIREVIRDRLKAMGFEVVEASDGEQALVRLREELPTITLLDLHMPKKSGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + + E + + +T +A + ++ L+KPF Sbjct: 67 VLQAIRENGLETTTIVMTAYATIEKAVEAMRVGAYDFLTKPF 108 >gi|289677217|ref|ZP_06498107.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 194 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV+ ++G A +++ + F L+L D MP MDG E Sbjct: 72 RVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGYE 131 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R R++ P+L ++ +T A A L+KPF +LV+ +++ + I Sbjct: 132 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWIPIT 191 Query: 122 N 122 Sbjct: 192 G 192 >gi|283953885|ref|ZP_06371415.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni 414] gi|283794664|gb|EFC33403.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni 414] Length = 226 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R LIK L + +++ NG K ++ L++TDI MP MDG+++ Sbjct: 10 ILVVEDEIKTRESLIKVLSERFSKIIGARNGVEGLKKFKKFKPDLVITDIAMPIMDGLDM 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 AR E+ D+ ++ ++ ++ S K L KP + +L +N L+ Sbjct: 70 AREIKEISDDVPIVVLSAYSEKERLLCSIDIGIDKYLIKPIDIEELFKVLNCLV 123 >gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 224 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 40/64 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ L+K L Y V C NGA A D + + L++ DI++P +DG++ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPGIDGLQ 61 Query: 64 LARR 67 + +R Sbjct: 62 VLQR 65 >gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB [Bryantella formatexigens DSM 14469] gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB [Bryantella formatexigens DSM 14469] Length = 224 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QK+L+ EDD ++ + G++V ++G +K++ + L+L D+++P + Sbjct: 1 MDQKLLVVEDDRRLQEIISDYFESKGWQVRVTDDGEEVLEKIQTNSYQLILLDVMLPGEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + R+ E+ D+ V+FIT + A ++KPF L L +V L+ Sbjct: 61 GFTICRKIREIS-DVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALI 117 >gi|224368411|ref|YP_002602574.1| sensory histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223691127|gb|ACN14410.1| sensory histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 874 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++L +D D + K L GYEV++ N A + ++ P F L++TD+ M +M G Sbjct: 756 RLLFVDDQDALVETGQKLLENLGYEVIAENCPQKALELFQKSPDSFDLIITDLAMKKMTG 815 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + LA + + D+ ++ TG+ A +++KPF + L +++ LL Sbjct: 816 VMLAEKILAIRKDIPIILCTGYNDEATRVKILKTGVCSIINKPFSIHKLADKIQHLL 872 >gi|212695332|ref|ZP_03303460.1| hypothetical protein BACDOR_04879 [Bacteroides dorei DSM 17855] gi|212662111|gb|EEB22685.1| hypothetical protein BACDOR_04879 [Bacteroides dorei DSM 17855] Length = 1372 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR ++ L K Y++ NGA A ++ E L+++D++MP MDG Sbjct: 1122 ETILIVEDNADMRTYICSIL-KNNYQLKEAQNGAEALYLIQRETIDLIVSDLMMPVMDGN 1180 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL+R +A + + +T + A S + L KPF +EV L I Sbjct: 1181 ELSRQVKANLATSHIPFLMLTALRSEAQERISYEIGVDEYLCKPF------DEVILKLRI 1234 Query: 121 KN 122 +N Sbjct: 1235 RN 1236 >gi|225159368|ref|ZP_03725664.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224802029|gb|EEG20305.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 201 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL EDD R L ++L + G+ VV +G A + P ++++D +MP +DG+EL Sbjct: 3 ILTVEDDPVARAILRQSLQRLGHTVVETTDGHEALATLAARPVRVIVSDWLMPGIDGLEL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 R+ + FI + A + A +A V L+KP HL+++ Sbjct: 63 CRQLRARPKAGYIYFILLTSQAASAENQRAAIDAGVDDILTKPLHLQEI 111 >gi|189424798|ref|YP_001951975.1| response regulator receiver protein [Geobacter lovleyi SZ] gi|189421057|gb|ACD95455.1| response regulator receiver protein [Geobacter lovleyi SZ] Length = 121 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I+ A+D +R+ + L +AGY+VV +G A K+ + +L+TD+ MP +D Sbjct: 1 MAKLIMTADDSASVRQMVSFTLKQAGYDVVEAVDGKDALAKLGTQKVDMLITDLNMPNLD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI L + R L+ + ++ +T + + + A + KPF L+ V ++L Sbjct: 61 GIGLIKGVRGGALNKFIPIVMLTTESQESRKSEGKAAGATGWIVKPFKPEQLIAVVKKVL 120 >gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 255 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ + + AL G+E+ ++ A A DK R LL+ DI++P+MDG+ Sbjct: 31 RVLLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANTPDLLVLDIMLPDMDGLG 90 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R E +F+T +VA ++KPF L +LV + LL Sbjct: 91 VLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLL 145 >gi|300982788|ref|ZP_07176298.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 200-1] gi|300307053|gb|EFJ61573.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 200-1] gi|324013383|gb|EGB82602.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 60-1] Length = 900 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF++ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNSSGAQVVAVGNAAQALETLQNSEPFAVALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|128604|sp|P09432|NTRC_RHOCA RecName: Full=Nitrogen regulation protein ntrC gi|46079|emb|CAA30922.1| unnamed protein product [Rhodobacter capsulatus SB 1003] gi|313166|emb|CAA51075.1| ntrC [Rhodobacter capsulatus SB 1003] Length = 457 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + + + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATASLMTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E R P L V+ I+ + + L KPF L DL+ R L + Sbjct: 61 GLEALARIARERPGLPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRAARALEL 120 >gi|84514390|ref|ZP_01001754.1| chemotaxis regulator protein [Loktanella vestfoldensis SKA53] gi|84511441|gb|EAQ07894.1| chemotaxis regulator protein [Loktanella vestfoldensis SKA53] Length = 123 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL +D +R L + L KAG+EV + +G +K + E L++TD+ MP D Sbjct: 1 MTKRILAIDDSRTIRSLLTQTLQKAGFEVSTAVDGVDGIEKFQHEDADLVITDVNMPNKD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G + R + + V+ +T + AL + + KPF LV + RL Sbjct: 61 GFGVIADIRGGTRNRTVPVLVLTTESGAALKERARQAGATGWIVKPFDDEALVAVIRRL 119 >gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +AL G+E + ++G A K +++ D+ MP MDG+E Sbjct: 10 RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R DP + V+F+T AVA ++KPF L ++ V LL Sbjct: 70 TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALL 124 >gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 235 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 16/125 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++++ + L K GY+V +G +A DK++EE LL+ D+++PE+ G+ Sbjct: 4 KKILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGL 63 Query: 63 ELARRATELD--PDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 ++ R+ D DL ++ +T + L D ++KPF R+LV Sbjct: 64 DICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADD-------YVTKPFSPRELVAR 116 Query: 114 VNRLL 118 V +L Sbjct: 117 VKAIL 121 >gi|297374654|emb|CBL42941.1| adenylate cyclase [Candidatus Magnetobacterium bavaricum] Length = 180 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 41/62 (66%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++++L+ +DD R+FL L + GYEVV NGA ++K +E L++ D++MP+ + Sbjct: 1 MSRQVLIVDDDVATRKFLSLVLEQKGYEVVMAENGAEGFNKAKEIKPDLIVLDVMMPKQN 60 Query: 61 GI 62 GI Sbjct: 61 GI 62 >gi|293556317|ref|ZP_06674900.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291601517|gb|EFF31786.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] Length = 160 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TD++MPEMDG + Sbjct: 3 RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYD 62 Query: 64 LARRATELDPDLKVMFITGFA 84 L D+ V+ IT A Sbjct: 63 LVGSLRNARFDMPVLMITAKA 83 >gi|262043755|ref|ZP_06016858.1| transcriptional regulatory protein ZraR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038879|gb|EEW40047.1| transcriptional regulatory protein ZraR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 449 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD L L GY+V +NG A +++ ++ F L+L DI M EMDGI Sbjct: 13 QILVVDDDVSHCTILQALLRGWGYQVGLAHNGLQALEQIHQQVFDLVLCDIRMAEMDGIA 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P + V+ +T F++V ++ L KP L Sbjct: 73 TLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDFDTL 119 >gi|300021884|ref|YP_003754495.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299523705|gb|ADJ22174.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDDD + + ++L K GY+V N+G + + F +L+ D ++P +DG+ Sbjct: 2 RILLIEDDDQTAKLVKQSLVKHGYDVDVSNDGQNGFKHAVVGGFDVLVIDRMLPGLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + +R ++F+T + + L KPF L +LV V Sbjct: 62 IVQRLRAARVSSPILFLTAVGGIEDRIEGFESGADDYLVKPFALGELVARV 112 >gi|226225984|ref|YP_002760090.1| NtrC family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089175|dbj|BAH37620.1| NtrC family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 496 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+ V + G A D VR + F L+L D+ M + G+E Sbjct: 22 RILVVDDDRTLREGCVSVLQMDGHAVTATGRGDEALDLVRRKRFDLILVDLYMTPISGME 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVN 112 + + A E + V+ +TG VA + ++ L KPF HL+ L+ Sbjct: 82 VLKAAVEAHKQVIVVVMTGNPTVASSIEALRAGAWDYLPKPFSASHLQVLIG 133 >gi|224540465|ref|ZP_03681004.1| hypothetical protein BACCELL_05378 [Bacteroides cellulosilyticus DSM 14838] gi|224517907|gb|EEF87012.1| hypothetical protein BACCELL_05378 [Bacteroides cellulosilyticus DSM 14838] Length = 232 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 55/116 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL A+DD L + L K GYEV NG A ++ L+L DI MP +G E Sbjct: 5 KILFADDDLKYSMLLKRFLEKEGYEVTYAGNGKIALEQFPLIKPDLVLLDINMPGYNGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +A R E D + + F++ + A + L+KPF+ +L+ ++ T Sbjct: 65 VAERIRETDKHVLIFFLSDRSDKADRLQGFQLRANDYLAKPFYPEELIARIHERFT 120 >gi|241205682|ref|YP_002976778.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859572|gb|ACS57239.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 448 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD D+RR + L AG+ V + + +A + + ++TDI MPE+DG++L Sbjct: 7 VALIDDDKDLRRATAQTLELAGFSVSAYDGAKAALADLPADFAGPVVTDIRMPEIDGLQL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +D DL V+ +TG + + + ++KPF LV V R Sbjct: 67 FATLQGMDVDLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSVRR 118 >gi|152972866|ref|YP_001338012.1| transcriptional regulatory protein ZraR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957715|gb|ABR79745.1| response regulator in two-component reguatory system with ZraS, regulates zraP expression (EBP family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 443 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD L L GY+V +NG A +++ ++ F L+L DI M EMDGI Sbjct: 7 QILVVDDDVSHCTILQALLRGWGYQVGLAHNGLQALEQIHQQVFDLVLCDIRMAEMDGIA 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P + V+ +T F++V ++ L KP L Sbjct: 67 TLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDFDTL 113 >gi|197117873|ref|YP_002138300.1| HAMP domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197087233|gb|ACH38504.1| sensor histidine kinase response regulator, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 886 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 5/112 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L +D+ + + L + G+EV + +G A D +++ FS ++ D+ MP +DG Sbjct: 771 VLFVDDEQTVLEIGSEMLKELGFEVATAADGGEALDIFKQDADRFSFIILDLTMPRLDGE 830 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLV 111 + R+ +L P++KV+ +G+ +N A + KP++ LRD++ Sbjct: 831 QTYRQLRQLKPEVKVIMSSGYNEQEINQRLGGTGLAGFIQKPYNLSMLRDVI 882 >gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1427 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED++ R L + L G+ +G A + R+E + LLLTD MPE+DG L Sbjct: 1174 VLVAEDNETNRNVLRQQLAMLGFVAEMAEDGVQALEMWRKERYPLLLTDCHMPELDGYNL 1233 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 AR E + D++ I A AL + A + ++KP + +L Sbjct: 1234 ARAIREEEGDIRHTNIVAITADALKGTAEKCLAAGMDDYVTKPMQIPEL 1282 >gi|78778185|ref|YP_394500.1| two component transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78498725|gb|ABB45265.1| two component transcriptional regulator, winged helix family [Sulfurimonas denitrificans DSM 1251] Length = 229 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ ++R L + L V + +G AYD +++ +++TDI MP +DG+E+ Sbjct: 11 ILLAEDESELRELLHEYLQLFFGRVYAATSGDQAYDIYKQKKPDIIITDISMPNLDGLEM 70 Query: 65 ARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + E D + K++ ++ + A+ LN +S K K + L D+V + Sbjct: 71 ISKIRESDKETKIIVMSAHSEQERLLLAIKLNLESYLIKPIKTEALKTILLDIVKHL 127 >gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 245 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD R + L +GY V++ N+G A V L++TDIVMP M+ Sbjct: 19 MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEVYHPDLIVTDIVMPRMN 78 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL RR + P L V+ +T L KPF L +L ++ LL Sbjct: 79 GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIHNLL 138 >gi|118581880|ref|YP_903130.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] gi|118504590|gb|ABL01073.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] Length = 228 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDD--MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K L+A DDD + ++L AL AGY V+ +NG SA + + + L+D+ MP MDG Sbjct: 6 KGLIAVIDDDPLVLQYLDTALSLAGYRVLPFSNGESALEAMDAVHVDVFLSDVCMPGMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +EL D + V+ IT F L + + KPF L++ + R Sbjct: 66 LELLEAIRRRDSEAPVILITAFPGFDLAVSAIKKGAYDFIVKPFKNEYLLHAIER 120 >gi|328545820|ref|YP_004305929.1| Response regulator consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326415560|gb|ADZ72623.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 232 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +GASA D ++ +P +L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVQTYTDGASALDGLQGDPPNLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQT-SDIPVIFLTSKDDEIDELFGLKMGADD-------FIRKPFSQRLLVERVRAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|323704769|ref|ZP_08116346.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535695|gb|EGB25469.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 227 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++KI L ED+ + L K L + GY V + +G++A +++ + P L + DI++P++D Sbjct: 3 LSRKIYLVEDEKSLNLLLQKYLEREGYNVTTFFDGSTAMERINDMP-DLWILDIMLPDVD 61 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + E V+F++ + L D P KPF R+LV Sbjct: 62 GYELIKAIKEHSKFTPVIFMSARNEELDRVVGLELGSDDYLP-------KPFLPRELVIR 114 Query: 114 VNRLL 118 N+L+ Sbjct: 115 TNKLM 119 >gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101] Length = 240 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPE 58 M +ILL ED+ D+ L+ L + G+ V C++G SA+ + + + L L D ++P+ Sbjct: 1 MPLRILLVEDEPDLAEALVALLEQQGHVVDHCSDGLSAWTLLSGDLARYDLALVDWMLPQ 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + G+EL RR + V+ +T A + LSKPF + +L+ V L Sbjct: 61 LSGVELCRRLRAAGFTVPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRAL 119 >gi|315182034|gb|ADT88947.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio furnissii NCTC 11218] Length = 462 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 53/102 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L EDDD +R+ + L AG++V +G +A + + + F+ +++D+ +P+ DG+E+ Sbjct: 9 IALIEDDDIVRQATSQWLQLAGFDVCGFADGRAALEGLAAQRFATIISDVRLPDYDGVEM 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 L P V+ ITG V + + + KPF+ Sbjct: 69 LSELKSLQPHTPVILITGHGDVDMAVKALQKGAYDFIEKPFN 110 >gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 222 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D+ + L K GY V +C +G +A D + E + + DI++P DGI Sbjct: 2 RVLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDYMEAENYDGAIMDIMIPNKDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R + V+F+T + D+ A + ++KPF +L+ + +L Sbjct: 62 VLREMRNAGIQVPVLFLTAKTETQDIVRGLDAGA---SDYMTKPFEFSELMARLRVMLRT 118 Query: 121 KN 122 +N Sbjct: 119 QN 120 >gi|239787688|emb|CAX84196.1| Sensor protein [uncultured bacterium] Length = 646 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD + +L L GY V++ GA A E +L L D+ MP+M+G E+ Sbjct: 532 ILVAEDDPAVLDYLKHLLFDLGYRVLAAPGGAEALRLASENRPNLALCDVAMPDMNGPEV 591 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD-SNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R E P +K + ++G+ A+ P ++A ++KP +L + RLL +++ Sbjct: 592 ILRLKESQPGIKTVLMSGYPFPAMEPGLADA-----CINKPLDPVELAEILARLLAVED 645 >gi|281420672|ref|ZP_06251671.1| two-component system sensor histidine kinase/response regulator [Prevotella copri DSM 18205] gi|281405445|gb|EFB36125.1| two-component system sensor histidine kinase/response regulator [Prevotella copri DSM 18205] Length = 1333 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q +L+ ED+ D+R+FL L Y V+ NG + R+E +LTD+ MP MDG Sbjct: 1045 DQTVLVVEDNADLRKFLYSILSPT-YNVLLAENGKTGLVMARKETPDFILTDVTMPVMDG 1103 Query: 62 IEL---ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++ T L+ ++ VM ++ A+V ++KPF L+ + +L Sbjct: 1104 LSMIHEIKQDTTLN-NIPVMILSAKASVEDQQRGFDEGVDAYITKPFSTPYLLGRIEAIL 1162 Query: 119 T 119 T Sbjct: 1163 T 1163 >gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1548 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 ++L+ +D+ R L L + V + G +A D +RE PF ++ D MP Sbjct: 992 RVLVVDDNPQARMVLAHMLEGMTFRPVMADGGETALDLLREARDADTPFGMVFLDWQMPG 1051 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG+E AR L PDL V +T + S + VL KP L + RLL Sbjct: 1052 MDGLETARNIRTLAPDLPVAIVTAHGREEIFAASEGVGVSAVLVKPVQPSLLFDTAMRLL 1111 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LL ED++ R + L +AG + +GA A V E + L+L D+ MP MDG Sbjct: 1137 GSRVLLVEDNELNREVALGLLAEAGLVPDAAEDGAQAVRMVMEGDYDLVLMDVQMPVMDG 1196 Query: 62 IE---LARRATELD 72 E + RR+ E D Sbjct: 1197 YEATRIIRRSREAD 1210 >gi|167615453|ref|ZP_02384088.1| response regulator [Burkholderia thailandensis Bt4] Length = 476 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ D+ L + Y ++ N+G +A D + L+++D+ MP+M G E Sbjct: 41 VLLVDDEPDVLSSLKRTFRPKRYRMLCANSGEAALDLLAASEVDLIVSDLRMPQMSGAEF 100 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA+E PD + +TG++ + + N + L+KP+ DL+ V + L Sbjct: 101 LARASERHPDAMRILLTGYSEIDSAARAINEAGIYRYLTKPWDDHDLLLTVEQAL 155 >gi|254241016|ref|ZP_04934338.1| hypothetical protein PA2G_01697 [Pseudomonas aeruginosa 2192] gi|126194394|gb|EAZ58457.1| hypothetical protein PA2G_01697 [Pseudomonas aeruginosa 2192] Length = 992 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED R L L G+ V S +G A+++ + E F +++TD +MP MDG EL Sbjct: 864 ILLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYEL 923 Query: 65 ARR 67 ARR Sbjct: 924 ARR 926 >gi|254235569|ref|ZP_04928892.1| hypothetical protein PACG_01496 [Pseudomonas aeruginosa C3719] gi|126167500|gb|EAZ53011.1| hypothetical protein PACG_01496 [Pseudomonas aeruginosa C3719] Length = 992 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED R L L G+ V S +G A+++ + E F +++TD +MP MDG EL Sbjct: 864 ILLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYEL 923 Query: 65 ARR 67 ARR Sbjct: 924 ARR 926 >gi|170721432|ref|YP_001749120.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759435|gb|ACA72751.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 721 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62 ++LL +D++ +R L + GY+V + A+A + + + +L+TD VM +M G+ Sbjct: 606 RVLLVDDEEIVRHATALQLRELGYQVTEAASAAAALQLLEKGWWPDVLVTDHVMADMTGV 665 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A++ E DL V+ ITG+A N K +VL KP+ +L V RLLT Sbjct: 666 RFAQQMRERQADLPVLIITGYA----NLTPRELKGFEVLRKPYRRAELAQSVARLLT 718 >gi|148554147|ref|YP_001261729.1| response regulator receiver protein [Sphingomonas wittichii RW1] gi|148499337|gb|ABQ67591.1| response regulator receiver protein [Sphingomonas wittichii RW1] Length = 150 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 ++L ED+ + L +G +V + A V E PF ++LTD+VMP + G Sbjct: 29 RLLYVEDNAQIAEITCLMLEDSGLAIVQAGSAEEALKLVDADEAPFDIVLTDVVMPGLSG 88 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++LARR + P+L ++ ++GF+ L A ++L KPF L++ + R L Sbjct: 89 VQLARRLNQRWPNLPIVLVSGFSE-ELTLGYGA--QYELLRKPFTRGALLDCLQRHL 142 >gi|15597779|ref|NP_251273.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9948645|gb|AAG05971.1|AE004686_9 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 992 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED R L L G+ V S +G A+++ + E F +++TD +MP MDG EL Sbjct: 864 ILLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYEL 923 Query: 65 ARR 67 ARR Sbjct: 924 ARR 926 >gi|154247859|ref|YP_001418817.1| two component, sigma54 specific, Fis family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161944|gb|ABS69160.1| two component, sigma54 specific, transcriptional regulator, Fis family [Xanthobacter autotrophicus Py2] Length = 441 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ EDD+D++ ++AL G + + ++ + + + ++++DI +P MDG+ Sbjct: 7 IVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGMDGMSFL 66 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + T DPDL V+ ITG VA + + KPF + LV+ V R L Sbjct: 67 AKLTNHDPDLPVIMITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRAL 119 >gi|330878569|gb|EGH12718.1| response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967764|gb|EGH68024.1| response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 394 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQIFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R L L GY V + +G A ++ EE L + D++MP MDG +L Sbjct: 4 ILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARLAEEQIHLAVVDVMMPNMDGYQL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 D V+ +T + A L+KPF ++L+ + LL Sbjct: 64 CEEIRRY-YDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALL 116 >gi|302184827|ref|ZP_07261500.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae pv. syringae 642] gi|330897604|gb|EGH29023.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae pv. japonica str. M301072PT] gi|330954510|gb|EGH54770.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae Cit 7] Length = 394 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQIFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 220 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ +M L L AGY +G K E+ + L+L D+++P ++ Sbjct: 2 MKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRIN 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ RR E+ V+ +T V + L+KPF + +L+ +N LL Sbjct: 62 GIEVCRRLREI-KQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALL 118 >gi|221640012|ref|YP_002526274.1| response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|221160793|gb|ACM01773.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] Length = 117 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 4/113 (3%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 ED+D++ L + + GYE +GA A ++R L+L D+++PE+ G E+ + Sbjct: 2 EDEDNIAIALDYLITREGYEHDRVASGAEALGRIRSTHPDLVLLDVMLPEVSGYEIC-QG 60 Query: 69 TELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LDP L K++ +T + A +SKPF L+ L EV RLL Sbjct: 61 VRLDPTLAHVKILMMTARGSAIERKKGLALGADGFISKPFELKALREEVRRLL 113 >gi|218688881|ref|YP_002397093.1| hybrid sensory histidine kinase TorS [Escherichia coli ED1a] gi|218426445|emb|CAR07271.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli ED1a] Length = 910 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF++ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNSSGAQVVAVGNAAQALETLQNSEPFAVALVDFDLPDIDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|254458170|ref|ZP_05071596.1| two component transcriptional regulator, winged helix family [Campylobacterales bacterium GD 1] gi|207085006|gb|EDZ62292.1| two component transcriptional regulator, winged helix family [Campylobacterales bacterium GD 1] Length = 218 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 58/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ + + + L G++V + +G+ AY+ ++ + LLL DI +P +DG+ Sbjct: 2 KILLLEDEVMLNESICEYLESDGHKVETFFDGSQAYEAIKNNSYDLLLLDINVPGIDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + L + ++I+ + + L KPFHL++L ++R+ Sbjct: 62 FLEKIHSLKIHVPAIYISALVDIEDISRAYNLGCYDYLKKPFHLKELALRIDRV 115 >gi|124384287|ref|YP_001028366.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|124292307|gb|ABN01576.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] Length = 250 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 5 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 65 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 118 >gi|116050569|ref|YP_790612.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|115585790|gb|ABJ11805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 992 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED R L L G+ V S +G A+++ + E F +++TD +MP MDG EL Sbjct: 864 ILLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYEL 923 Query: 65 ARR 67 ARR Sbjct: 924 ARR 926 >gi|107102031|ref|ZP_01365949.1| hypothetical protein PaerPA_01003079 [Pseudomonas aeruginosa PACS2] Length = 924 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED R L L G+ V S +G A+++ + E F +++TD +MP MDG EL Sbjct: 796 ILLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYEL 855 Query: 65 ARR 67 ARR Sbjct: 856 ARR 858 >gi|146297679|ref|YP_001181450.1| response regulator receiver protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411255|gb|ABP68259.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 510 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+LL ED+ MR+ +IK + G V +NG A + +++E +++TDI MP MD Sbjct: 3 KVLLVEDEVYMRKGIIKLVDWNGRGFVIYREASNGQEALEILKKEHIDVVITDIKMPVMD 62 Query: 61 GIELARR-ATELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIEL RR + E + V+ I+G FA A+ N L KP +L+ + Sbjct: 63 GIELIRRISEEFENRPAVVIISGYNEFEFAKAAIRYGVN-----DYLLKPIDEAELIQTL 117 Query: 115 NRLLT 119 R+ T Sbjct: 118 ERIKT 122 >gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Rv] gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Ra] gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis F11] gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis H37Ra] gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 94_M4241A] gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis GM 1503] gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210] gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207] gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506] gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475] gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium tuberculosis H37Ra] gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis F11] gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis CDC1551A] gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis W-148] gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 4207] Length = 230 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +D Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 >gi|323698743|ref|ZP_08110655.1| response regulator receiver protein [Desulfovibrio sp. ND132] gi|323458675|gb|EGB14540.1| response regulator receiver protein [Desulfovibrio desulfuricans ND132] Length = 127 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 44/81 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ D + + E +G A D VR++ F +++ D++MP M G+E Sbjct: 5 RLLLVDDETDFLNAYARRFARRNVETTLAASGQEAIDLVRDDEFDVVVMDVMMPGMSGLE 64 Query: 64 LARRATELDPDLKVMFITGFA 84 RR + PDL V+ +TG A Sbjct: 65 TLRRLKAIKPDLPVIILTGHA 85 >gi|307720910|ref|YP_003892050.1| two component transcriptional regulator, winged helix family [Sulfurimonas autotrophica DSM 16294] gi|306979003|gb|ADN09038.1| two component transcriptional regulator, winged helix family [Sulfurimonas autotrophica DSM 16294] Length = 217 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ +R + + L GYEV +G AYD V ++ + LLL D+ +P ++G E Sbjct: 2 KILLLEDEYSLRISIEEFLTDLGYEVDGIMDGLEAYDAVYDKAYDLLLLDVNVPSLNGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L ++ D + +F+T + + + KPF L +L Sbjct: 62 LLKKIRVDDITIPAIFLTSMTDMDDLKEGYKRGCCDYIRKPFDLEEL 108 >gi|298244853|ref|ZP_06968659.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ktedonobacter racemifer DSM 44963] gi|297552334|gb|EFH86199.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 64/118 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +D+ + L + L K GY+V + ++G + ++++ L+L D+ +P++ Sbjct: 1 MSLGILIVDDEPHLPHQLARYLRKRGYDVYTASDGEAGLRELQKNTIDLVLLDLRLPKLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RR E + +L V+ +T + V ++ + + K F L +L+ V R L Sbjct: 61 GLEVLRRIREHEAELPVVILTAYGDVQTAVEAMKLGASDYILKGFDLEELLLVVKRAL 118 >gi|322419720|ref|YP_004198943.1| CheA signal transduction histidine kinase [Geobacter sp. M18] gi|320126107|gb|ADW13667.1| CheA signal transduction histidine kinase [Geobacter sp. M18] Length = 762 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED R L L AGY+V + +G + ++R F L+++D+ MP MDG E Sbjct: 645 RILVVEDSITSRTLLKNILEAAGYDVTTAVDGLDGFSQLRSGGFDLVVSDVDMPRMDGFE 704 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRL 117 L R+ D +L + + ++ D +A NA ++ F +L+ V R Sbjct: 705 LTRKIRH-DRELAELPVVLVTSLGSREDRERGIDAGANAYIVKASFDQSNLLETVQRF 761 >gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 211 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +KV+ ++ F+ Sbjct: 61 MDGIEATKRLKQYDETIKVLILSSFS 86 >gi|227529808|ref|ZP_03959857.1| two component response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350292|gb|EEJ40583.1| two component response regulator [Lactobacillus vaginalis ATCC 49540] Length = 225 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 59/114 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED++ + R L A+ ++GY+V + NG +A + ++ + ++ DI+MP +GIE Sbjct: 6 RILLAEDEEQLARVLKMAMEQSGYQVDAVENGQAAVELSQKNAYDAIILDIMMPIKNGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + +M +T A + L+KPF L++L+ + L Sbjct: 66 ALKEIRARGDRTYIMMLTAMAEEDDRVNGLDSGADDYLTKPFSLKELLARLRSL 119 >gi|262196408|ref|YP_003267617.1| Fis family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079755|gb|ACY15724.1| two component, sigma54 specific, transcriptional regulator, Fis family [Haliangium ochraceum DSM 14365] Length = 447 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 49/83 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ +R F+ + L G+EV + + A ++R+ F+L++TD+ MP M G+E Sbjct: 3 RVLIVDDEEGIRSFVAECLELDGHEVETAASAEEALTRLRKAAFALVVTDLRMPGMSGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L A P+++ + IT V Sbjct: 63 LLEIAQAEQPEVEFIMITAHGKV 85 >gi|108759510|ref|YP_630735.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108463390|gb|ABF88575.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 468 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD +I+ + G ++ NG A + +R + ++TD++MP MDG EL Sbjct: 6 VLVVDDDRANLDSVIRIFQREGMATLAAANGTEALELLRRPEVAAMVTDLMMPNMDGQEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R A + PD++V+ +T + V + ++KP LV + + L Sbjct: 66 LRAARAIRPDVEVVLMTAYGTVETAVAAMKDGAYDFITKPLKRHALVKAIQKAL 119 >gi|94968804|ref|YP_590852.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94550854|gb|ABF40778.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 129 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIE 63 +L+ ED+ + F+ +AL + GY VV N+G A + ++ + F +++D+ P +DG Sbjct: 5 LLVIEDEPAVMSFVRRALERGGYTVVGANSGMQALELLKGQQFQGIISDMRTPGNVDGGG 64 Query: 64 LARRATELDPDL--KVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + E P+L +++FITG VA+ ++ AP + KPF ++DL+ V Sbjct: 65 VYHWIREHRPELANRIVFITGDIVNEETVAVLKETGAP----CVEKPFRVQDLIATV 117 >gi|85858947|ref|YP_461149.1| adenylate and guanylate cyclase catalytic domain-containing protein [Syntrophus aciditrophicus SB] gi|85722038|gb|ABC76981.1| adenylate and guanylate cyclase catalytic domain protein [Syntrophus aciditrophicus SB] Length = 334 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62 +++ +D++ +RR L K L K GYEV++ G A V R+ +++D MP MDG+ Sbjct: 6 LMVVDDEEGVRRSLRKVLAKDGYEVITAETGEEALKIVADRKHDLETVISDFKMPGMDGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPF---HLRDLVNEVN 115 + ++ ++ + +TG+A + + A NA + L+KPF +R V E N Sbjct: 66 QTLVEIGRMNSEITRIMLTGYATM---ESAIAAVNAGIDGFLTKPFENIEIRAKVREYN 121 >gi|114321576|ref|YP_743259.1| response regulator receiver modulated metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1] gi|114227970|gb|ABI57769.1| response regulator receiver modulated metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1] Length = 480 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ R ++ L + GY V +G A D V+ P L+L DI MP++DG E Sbjct: 13 EVLVVDDNPANLRLMVSVLREGGYAVRVAPSGRLALDSVQARPADLILLDIRMPDLDGYE 72 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + DP D+ V+F++ A A ++KPF +++ V L + Sbjct: 73 VCRR-LKADPARHDIPVIFLSALCEPADKVRGFAVGAVDYITKPFVAEEVLVRVQSHLAL 131 >gi|294786802|ref|ZP_06752056.1| two-component system response regulator [Parascardovia denticolens F0305] gi|315226432|ref|ZP_07868220.1| two component system response regulator [Parascardovia denticolens DSM 10105] gi|294485635|gb|EFG33269.1| two-component system response regulator [Parascardovia denticolens F0305] gi|315120564|gb|EFT83696.1| two component system response regulator [Parascardovia denticolens DSM 10105] Length = 231 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 6/83 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++AED+ R ++++LG+ GY+VV NG A DKVRE +++ DI MPEM+GI Sbjct: 15 VVVAEDEALNRLDIVESLGENGYDVVGEAANGKEAVDKVRELKPDIVVMDIKMPEMNGIT 74 Query: 64 LARRATELDPDL--KVMFITGFA 84 AR E++ D V+ +T F+ Sbjct: 75 AAR---EINKDFLAPVVMLTAFS 94 >gi|297569916|ref|YP_003691260.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925831|gb|ADH86641.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 634 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ +DD +R L + G V C + +S D + +L+L DI +P++DG+ L Sbjct: 27 VIVDDDPAIREPLHRYFASHGLAVEECADASSLLDLLTRRKVALMLLDIGLPDIDGVTLL 86 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP------FHLRDLVNEVNRLL 118 R E D D+ V+ +TG A + + + +SKP FH+ E RLL Sbjct: 87 PRVVEKDSDIAVVMLTGVADLQVALECMRQGATDYISKPANFDQIFHVARRALEKRRLL 145 >gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 659 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 7/121 (5%) Query: 4 KILLAEDDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+A DDD + RF I K L K GYEV NG A D + + + L L DI MP +DG+ Sbjct: 539 KVLVA-DDDMVSRFAIQKQLEKMGYEVHIAENGGRALDMLAADEYGLALIDIQMPVVDGV 597 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 E+ R+ + +++ + I +A A++ D+ + ++KP DL + + Sbjct: 598 EVISQVRSGAIGEEVRRIPIIAISAYAMSGDAEKFTESGADDYIAKPLLFEDLEKSILNI 657 Query: 118 L 118 L Sbjct: 658 L 658 >gi|187933594|ref|YP_001887202.1| response regulator [Clostridium botulinum B str. Eklund 17B] gi|187721747|gb|ACD22968.1| response regulator [Clostridium botulinum B str. Eklund 17B] Length = 218 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ EDD+ + + L GY+ +G A++ ++EE F L+L DI++P MD Sbjct: 1 MKINVLIIEDDEAISNLIKINLSMVGYKSKQLFDGLEAFNLLKEESFDLILMDIMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL ++ +L ++ V+F+T +A + KPF +L+ + +L Sbjct: 61 GFELMKKIKDL--NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVL 116 >gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ +DD + + + L AGY+V +G +A V EP L++ D+++P +D Sbjct: 1 MTQRVLVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEPPDLVVLDLMLPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RR + ++ +T A LSKPF R+LV V +L Sbjct: 61 GLEVCRRLRAQPGGIPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVL 118 >gi|115376543|ref|ZP_01463776.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|310822065|ref|YP_003954423.1| response regulator/ggdef domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115366476|gb|EAU65478.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|309395137|gb|ADO72596.1| Response regulator/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1] Length = 453 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL +D+ R L AG+ V + + A + + F ++TD+++P DG+E Sbjct: 3 HILLVDDEKMARTLYGDYLNAAGHSVTAVSGLQEAQEALASSHFDAVVTDLILPGGDGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN--AKVLSKPFHLRDLVNEVNRLLTIK 121 + R E P ++V+ ITG V +P A K+ A+ L KP L + V R LT + Sbjct: 63 VLRHTKERYPGIEVVVITGLDKV--DPAVRAIKSGAAEYLVKPVAPEALQHAVRRALTTR 120 Query: 122 N 122 + Sbjct: 121 D 121 >gi|56550975|ref|YP_161814.1| response regulator receiver protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761436|ref|ZP_04759524.1| response regulator receiver protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753351|ref|YP_003226244.1| response regulator receiver protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542549|gb|AAV88703.1| response regulator receiver protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374343|gb|EER63840.1| response regulator receiver protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552714|gb|ACV75660.1| response regulator receiver protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 121 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q I+ +D MR L ALGK GY ++ +G A +K+ LL+TDI MP MD Sbjct: 1 MAQTIMTVDDSPSMRMLLRAALGKMGYTIIEAEDGIDAMEKLSNNRPDLLITDINMPRMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L + D ++ ++ +T + + + KPF L + R+L Sbjct: 61 GFGLIESVRQDDSWRNMPILVLTTETSDEKKQRARIAGATGWIVKPFSPDKLAAAIRRVL 120 >gi|220931904|ref|YP_002508812.1| response regulator receiver protein [Halothermothrix orenii H 168] gi|219993214|gb|ACL69817.1| response regulator receiver protein [Halothermothrix orenii H 168] Length = 122 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++KIL+ +D MR L L GY+V+ +NG A + +E L+ DI MPEM Sbjct: 1 MSKKILIVDDAAFMRLTLKNLLENEGYDVIGEASNGQEAVELYQELEPDLVTLDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DGI + +DPD K++ + ++ ++ + KPF Sbjct: 61 DGISALKEIKGIDPDAKIIMCSAMGQQSMVIEAIEAGAKDFIVKPFK 107 >gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] Length = 888 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL+ +D+ + L K+G++V + G A D +R L+L DI MP MDG Sbjct: 768 NYRILVVDDNAVNLKVTRALLRKSGFQVDIASRGEDAIDSIRASVPDLVLMDIQMPGMDG 827 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R + DPD + + I G A D A +A + L+KP L L ++R L Sbjct: 828 LATTRLLRQ-DPDFRHLVIIGLTANVSKEDRQACLDAGMNDYLTKPISLLKLSECLSRWL 886 Query: 119 TI 120 + Sbjct: 887 PV 888 >gi|117926506|ref|YP_867123.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117610262|gb|ABK45717.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 134 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +DD+ M + L + GY++V +G ++E L+LTD+ MP+M+GIE+ Sbjct: 4 ILFIDDDEVMLTLISPQLEEFGYQLVHAFSGREGMQALQEHAIDLILTDLDMPDMNGIEM 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RA E + ++ +T + ++ L+ + + SKP + L E+ LL Sbjct: 64 IQQIRAQEESAHIPIVVLTAYDSLVLSKQATSLGADLFQSKPVDVARLHPELQALL 119 >gi|302520395|ref|ZP_07272737.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429290|gb|EFL01106.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 256 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L AL G+E+ + +GA A +VR ++ D+V+P+MDG+ Sbjct: 23 RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 82 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PD V+F+T A A + +SKPF L ++V + L+ Sbjct: 83 VLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLI 137 >gi|294645151|ref|ZP_06722874.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294807005|ref|ZP_06765824.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292639482|gb|EFF57777.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294445704|gb|EFG14352.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1397 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L+ ED++++ + + + L K Y V + NG + E L+++D++MPEMDGI Sbjct: 1141 HSVLVIEDNEELLQLMTRLL-KREYNVFTAENGKEGISVLENEDIDLIVSDVMMPEMDGI 1199 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 E + + +L++ I A N + + + +V +SKPF+L L + L Sbjct: 1200 EFCKY---VKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNL 1256 Query: 118 LTIK 121 L K Sbjct: 1257 LKYK 1260 >gi|239906625|ref|YP_002953366.1| putative NtrC family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239796491|dbj|BAH75480.1| putative NtrC family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 460 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD + L L AGY+VV NG A + + +P L+++D+ MP MDG+ Sbjct: 10 KTILVVDDDPHILEVLEVRLVSAGYDVVPAANGLEALEVLSRQPVRLVISDMRMPGMDGM 69 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + L ++F+T ++ ++ L+KPF ++L+ V Sbjct: 70 RMLEEMERRGIKLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLARVT 122 >gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +KV+ ++ F+ Sbjct: 61 MDGIEATKRLKQYDETIKVLILSSFS 86 >gi|223939079|ref|ZP_03630963.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223892239|gb|EEF58716.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 769 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPE-M 59 + IL+ ED+ +R L GY+V+ ++G A + + LLLTD++MP+ + Sbjct: 649 ETILVVEDEPVLRDLAQLILQDCGYKVIEASSGVEALTIWQQHQGNIDLLLTDMIMPDGL 708 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA+ P LKV+F +G++ + + N + + L KP+ L V L Sbjct: 709 SGKDLAKSLLLHKPQLKVIFSSGYSVDDIGIEPNLKEGPRFLQKPYSRTTLAKAVRESL 767 >gi|167917734|ref|ZP_02504825.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 239 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] Length = 219 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ +M L L AGY +G K E+ + L+L D+++P ++ Sbjct: 1 MKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRIN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ RR E+ V+ +T V + L+KPF + +L+ +N LL Sbjct: 61 GIEVCRRLREI-KQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALL 117 >gi|220919354|ref|YP_002494658.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957208|gb|ACL67592.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 712 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D L AL AGYE+V +GA A + + +L+L D+ MPEMDG E Sbjct: 8 KILLVDDRPANLLALESALSGAGYELVKAGSGAEALRFLLRDECALILLDVNMPEMDGYE 67 Query: 64 LAR--RATELDPDLKVMFITGFAA 85 AR R ++ V+FIT + A Sbjct: 68 TARLVRQNPRTRNIPVVFITAYGA 91 >gi|220915942|ref|YP_002491246.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953796|gb|ACL64180.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 122 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPEMD 60 + ILL EDDD +R + + L GY V + NG + + +R L++ D+VMP M+ Sbjct: 3 GRSILLVEDDDAIRESVAECLDAEGYAVATVENGVAGLEWLRRSGRPDLVVLDLVMPVMN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G + A DP L+ + + A + P L+KPF L L+ V R Sbjct: 63 GAQFL-EAVRGDPSLRDLPVVLMTAALPSAQLPVPVADGYLTKPFELDQLLETVAR 117 >gi|218779067|ref|YP_002430385.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760451|gb|ACL02917.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 897 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL +D+ + + L + GY+V + N A + R P F L++TD+ MP M Sbjct: 771 EHILLVDDEASIIHLERQVLQRIGYKVTAFNKSPQALEAFRAAPQDFDLVMTDMTMPNMT 830 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G ++ + + PD+ V+ TGF+ Sbjct: 831 GEQIIKAVLAIRPDIPVILCTGFS 854 >gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L KAG++VV+ +G A +KV E +L++ D+++P++D Sbjct: 1 MGKKILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ +R + ++ +T + L D ++KPF R++V Sbjct: 61 GVEVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDY-------MTKPFSPREVVAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia pseudomallei K96243] gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia pseudomallei K96243] gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 247 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|332284266|ref|YP_004416177.1| two-component response regulator [Pusillimonas sp. T7-7] gi|330428219|gb|AEC19553.1| two-component response regulator [Pusillimonas sp. T7-7] Length = 208 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 52/114 (45%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD+ +R L L GY V S + + +L+ D+ MP M G+EL Sbjct: 10 IYIVDDDEAVRDSLRWLLEANGYRVRSYSGAEEFLHAYEPDQVGVLIADVRMPGMSGLEL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D L ++FITG V + + L KPF+ DL N V R+L Sbjct: 70 QEELLQRDAPLPIVFITGHGDVPMAVSTMKKGAVDFLEKPFNETDLRNIVARML 123 >gi|317050807|ref|YP_004111923.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316945891|gb|ADU65367.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 327 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 17/93 (18%) Query: 4 KILLAEDDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVRE-------------EPFSL 49 K +LA DD R LI K L AGY V+S N+GA AYD + E + SL Sbjct: 195 KTVLAVDDSAFIRKLIEKTLITAGYRVISANDGAEAYDMLMEFEQIAHSEGGNIGDHVSL 254 Query: 50 LLTDIVMPEMDGIELARRATELDPDLK---VMF 79 +++D+ MP MDG+ L +R E + +K +MF Sbjct: 255 IISDVEMPRMDGMHLVKRLREREIYVKLPVIMF 287 >gi|266625033|ref|ZP_06117968.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288863074|gb|EFC95372.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 398 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I+L +D++++R+ +IK + AG++VV NG A +K+ ++LTDI MP MDG Sbjct: 6 IILVDDEEEVRKSIIKQIDWESAGFQVVGDAENGEDALEKIEVLEPDVVLTDIRMPYMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + LA + + P KV+ +G+ + + + KP ++ +L + + R+ Sbjct: 66 LTLAEKIRQRYPSTKVVIFSGYDDFEYAQKAIKLNVTEYILKPVNVEELTSILKRI 121 >gi|237715359|ref|ZP_04545840.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405201|ref|ZP_06081751.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229444668|gb|EEO50459.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356076|gb|EEZ05166.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1384 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L+ ED++++ + + + L K Y V + NG + E L+++D++MPEMDGI Sbjct: 1128 HSVLVIEDNEELLQLMTRLL-KREYNVFTAENGKEGISVLENEDIDLIVSDVMMPEMDGI 1186 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 E + + +L++ I A N + + + +V +SKPF+L L + L Sbjct: 1187 EFCKY---VKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNL 1243 Query: 118 LTIK 121 L K Sbjct: 1244 LKYK 1247 >gi|258514099|ref|YP_003190321.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum acetoxidans DSM 771] gi|257777804|gb|ACV61698.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum acetoxidans DSM 771] Length = 448 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 58/110 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D++ M L +AL GY+V++ G +E S+++ D+ +P++D Sbjct: 1 MIPRILVIDDEEKMCWALDRALSHEGYQVITSTEGLQGIALAQEIEPSIVILDLWLPDID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+E R+ E++ + V+ +T + ++ ++KPF L +L Sbjct: 61 GMEALRKIKEINAGMPVIMLTAHGTIETAIEAMKLGANDYITKPFKLDEL 110 >gi|226357470|ref|YP_002787209.1| response regulator, OmpR [Deinococcus deserti VCD115] gi|226319460|gb|ACO47455.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 226 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 18/125 (14%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ EDD D+ + + L +AG+ V S +GAS E+ L+L D+ +P++D Sbjct: 1 MSARILVIEDDPDITQVVKFVLEEAGHRVFSAPDGASGLCVAHEQNPDLILLDLGLPDID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK-------NAKV---LSKPFHLRDL 110 G ++ARR T L +++M G A PD K ++ V ++KPFH ++L Sbjct: 61 GAQVARRLT-LTSHVRIM---GLRA----PDDVDHKINLFDLFDSGVEAYMTKPFHPQEL 112 Query: 111 VNEVN 115 + VN Sbjct: 113 LARVN 117 >gi|172038470|ref|YP_001804971.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699924|gb|ACB52905.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 122 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++ILL +DD D+ A K A +EV ++G +K + E ++L D+ MP+M Sbjct: 1 MTKRILLVDDDQDILDIAEIAFQKLAQWEVFRASSGLECLEKAKTEELDVILLDVSMPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNR 116 DG ++ A + DP + + I A AL D N + VL KPF+ + E++ Sbjct: 61 DGFQVV-EALQADPLTQEIPIVLLTARALPRDENYYQEIGVVGVLRKPFNPLTIWRELSE 119 Query: 117 LL 118 +L Sbjct: 120 ML 121 >gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] Length = 247 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|118590588|ref|ZP_01547990.1| Response regulator receiver [Stappia aggregata IAM 12614] gi|118437051|gb|EAV43690.1| Response regulator receiver [Stappia aggregata IAM 12614] Length = 248 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +G SA D ++ +P L + DI MP MDG+EL Sbjct: 20 IALVDDDRNILTSVSIALEAEGYRVQTYTDGTSALDGLQSDPPELAIFDIKMPRMDGMEL 79 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + + DL V+F+T + + D + KPF R LV V + Sbjct: 80 LRRLRQ-NSDLPVIFLTSKDDEIDELFGLKMGADD-------FIRKPFSQRLLVERVRAV 131 Query: 118 L 118 L Sbjct: 132 L 132 >gi|331019555|gb|EGH99611.1| response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 394 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQIFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|330005100|ref|ZP_08305110.1| fused DNA-binding response regulator [Klebsiella sp. MS 92-3] gi|328536433|gb|EGF62786.1| fused DNA-binding response regulator [Klebsiella sp. MS 92-3] Length = 449 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD L L GY+V +NG A +++ ++ F L+L DI M EMDGI Sbjct: 13 QILVVDDDISHCTILQALLRGWGYQVGLAHNGLQALEQIHQQVFDLVLCDIRMAEMDGIA 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P + V+ +T F++V ++ L KP L Sbjct: 73 TLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDFDTL 119 >gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ +L + L ++GY V NG + EE F L++ D+++P +DG + Sbjct: 2 RILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLPGLDGWQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + V+F+T AV L KPF +L+ V LL Sbjct: 62 LVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLL 116 >gi|327470090|gb|EGF15554.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 240 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 15/102 (14%) Query: 26 GYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF- 83 G +V++ NG A+ K +E P +LLTDI MP+M+G+ LA+ + P ++F+TG+ Sbjct: 23 GMQVIAQAENGIEAWQKFQENPADILLTDINMPQMNGLALAKLVRDQAPKCHIVFLTGYD 82 Query: 84 ------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A+ L D L KPF D+ + +L T Sbjct: 83 DFDYARTAIKLGADD-------YLLKPFSKDDVEEMLAKLQT 117 >gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 232 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 41/66 (62%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V N+G +K + ++L D++MP+MDG Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDG 62 Query: 62 IELARR 67 +E+ RR Sbjct: 63 LEVCRR 68 >gi|309780589|ref|ZP_07675335.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA] gi|308920639|gb|EFP66290.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 1437 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED R + K L GY V +G A +++ E F LLTD MP MDG +L Sbjct: 1183 ILVAEDHPINRELIAKQLRLLGYRVTLAEDGVVALERLHEHRFDALLTDCHMPRMDGFDL 1242 Query: 65 AR--RATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 AR R E D P L ++ IT + A L KP L L ++ L T Sbjct: 1243 ARHIRHEEGDGPRLPIIAITATTLAEEHARCRAVGMDASLLKPTTLATLQEALSALCT 1300 >gi|302036483|ref|YP_003796805.1| sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] gi|300604547|emb|CBK40879.1| Sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] Length = 461 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 +L+ ED++ MRR L AGY+++ +G A ++E + F +++TD+ + + G++ Sbjct: 6 LLIVEDEERMRRLFELVLKPAGYQLLLARSGDEALRMIQEHQSFDMIITDLQLGTVSGMD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + A + PD+ V+ +TG+ V ++ +SKP +L + R L ++ Sbjct: 66 VLEAARQQLPDVPVLIVTGYGTVKSAVEAMQKGAYDYISKPVDNEELKIVIARALQVRQ 124 >gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 252 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 9/130 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---------PFSLLLT 52 +IL+ ED+D +R ++ AL GYE+ + N+G SA + +++E F LL+ Sbjct: 18 THRILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVL 77 Query: 53 DIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 D+++P+++G+++ R + ++ ++ A+ L+KPF +R+LV Sbjct: 78 DLMLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137 Query: 113 EVNRLLTIKN 122 L+ +N Sbjct: 138 RCRALIRRQN 147 >gi|172037147|ref|YP_001803648.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171698601|gb|ACB51582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 1499 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED +D R ++ L GY+ NG D+ E+ + L+ D MP +DG E Sbjct: 1382 KILLVEDYEDNRFLMLMLLENLGYQADWVTNGQEFLDQTEEQEYDLVFLDCQMPILDGYE 1441 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 +R + + + G A A+ D +A + LSKP + +LVN Sbjct: 1442 AIQRFRQREGASNHTVVIGITAHAMEGDRQKCLDAGMDDYLSKPIIMENLVN 1493 >gi|170751600|ref|YP_001757860.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658122|gb|ACB27177.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 703 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMD 60 Q++L+ ED+ ++ RF + L GY N A D+ V F ++ +D+VMP M Sbjct: 576 QRVLVVEDNIEVGRFCTQILQDLGYVTEWAANAEEALDRLGVDGGGFDVVFSDVVMPGMG 635 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LA E P L V+ +G++ V D + ++L KP+ L + R++ Sbjct: 636 GVALAETLRERLPALPVVLASGYSHVLARRDDHG---FELLHKPYSAEQLARILQRVV 690 >gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei 9] Length = 241 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 5 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 65 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 118 >gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei 14] Length = 239 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|148257506|ref|YP_001242091.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409679|gb|ABQ38185.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 490 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-M 59 ++ IL+ EDD +R +++ + + GY +S +N + E LL TD+++P M Sbjct: 370 DETILVVEDDALVRDYVVAQVRRLGYRTLSASNAVEGLALIDNPERIDLLFTDVIIPGGM 429 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA A + P LKV++ +G+ A+ + +L+KP+ DL + L Sbjct: 430 NGRQLALEAEKRRPGLKVLYTSGYTENAIVHHGRLDADVLLLAKPYLSADLARMIRTAL 488 >gi|158521104|ref|YP_001528974.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158509930|gb|ABW66897.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 846 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD D R + + L GY V +C +G A + ++ F L+L+DI MP +DG +L Sbjct: 727 VLLVEDDADTRMLITRFLETDGYTVTACADGIDALLCLGKQSFDLILSDIDMPNLDGFKL 786 Query: 65 ARRATELDPDLKVMFITGFAA 85 + + V+F+T A Sbjct: 787 LEMINQKGVSVPVIFLTSRAG 807 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 10 DDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR-- 67 DDD + L++ +EV++ NG + E P L+L DI MP+MDG E+ R Sbjct: 14 DDDRNQLALVERFLSGPFEVITAENGEDGLRIISETPPDLVLLDINMPKMDGYEVCTRLQ 73 Query: 68 ATELDPDLKVMFITG 82 AT + V+F+T Sbjct: 74 ATPKTSFIPVVFLTA 88 >gi|77918809|ref|YP_356624.1| CheY response regulator [Pelobacter carbinolicus DSM 2380] gi|77544892|gb|ABA88454.1| response regulator receiver protein [Pelobacter carbinolicus DSM 2380] Length = 123 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +K+L+ +D + MR+ + ++L +AG+E ++ +G +A + + E ++L+DI MP Sbjct: 1 MGKKVLIVDDSNTMRKIVARSLRQAGFEFEKLLEAADGQAALEVLAGESVDIVLSDINMP 60 Query: 58 EMDGIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 MDGIE R+ A E + V+ IT A + ++ + KPF D V EV Sbjct: 61 VMDGIEFLRQKNADEQIKGIPVVMITTEAGTDVLNEALTLGAVGTIKKPFT-PDQVQEV 118 >gi|323495382|ref|ZP_08100459.1| chemotaxis protein CheV [Vibrio brasiliensis LMG 20546] gi|323310305|gb|EGA63492.1| chemotaxis protein CheV [Vibrio brasiliensis LMG 20546] Length = 308 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 9/86 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G++VV+ +G AYDK+ E + SL+++DI Sbjct: 182 RRILIADDSTVARKQVERAITSLGFDVVAVKDGKEAYDKLVEMAADGSIYDQISLVISDI 241 Query: 55 VMPEMDGIELARRATELDPDLKVMFI 80 MPEMDG L PDLK +++ Sbjct: 242 EMPEMDGYTLTAEVRR-HPDLKDLYV 266 >gi|320198931|gb|EFW73529.1| Nitrogen regulation protein NR(I) [Escherichia coli EC4100B] Length = 461 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|300854131|ref|YP_003779115.1| chemotaxis response regulator CheY [Clostridium ljungdahlii DSM 13528] gi|300434246|gb|ADK14013.1| chemotaxis response regulator CheY [Clostridium ljungdahlii DSM 13528] Length = 120 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR + L K G+EVV NNG A + ++E ++ DI MP+MDGI Sbjct: 3 KILIVDDAAFMRMMIKDILEKNGFEVVGEANNGLKAVELYKKEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E + D K++ + + D+ + KPF ++ +N+++ Sbjct: 63 EAVKAIKGFDAGAKIIMCSAMGQQTMVMDAIKAGARDFIVKPFQPDRVLEAINKVVA 119 >gi|281424414|ref|ZP_06255327.1| DNA-binding response regulator RprY [Prevotella oris F0302] gi|281401683|gb|EFB32514.1| DNA-binding response regulator RprY [Prevotella oris F0302] Length = 232 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L G+ C +G Y + + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGFAATLCPDGEVGYREFLKNKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV + +L Sbjct: 66 LAQEIRQANAEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|262171096|ref|ZP_06038774.1| hypothetical protein VII_001912 [Vibrio mimicus MB-451] gi|261892172|gb|EEY38158.1| hypothetical protein VII_001912 [Vibrio mimicus MB-451] Length = 571 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD +M R +I+ LGK G +NG A D V+ + L+ D MPEMDG E Sbjct: 447 ILVADDIEMNRIIIQGMLGKLGITPDFSHNGVEALDAVQHTQYDLIFMDCRMPEMDGFEA 506 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ E + ++ +T + VLSKP+ L DL Sbjct: 507 SQHLREQGYNKPIIALTAGTTIHEKQHCIECGMNDVLSKPYRLEDL 552 >gi|225570976|ref|ZP_03779999.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM 15053] gi|225160438|gb|EEG73057.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM 15053] Length = 959 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 6/125 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 +IL+ +DD+ L +G E ++G A + VRE + + L L D MPE Sbjct: 700 RILIVDDDEGAGTQAAAILDSSGAECTWASSGRKAVEYVRESLAGSQAYELALIDWKMPE 759 Query: 59 MDGIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDG+E R+ +L D ++ I+ + + ++ A +SKP DL N ++R+ Sbjct: 760 MDGLETTRQIRKLVGRDTMIIMISAYDYTEIESEARAAGADYFISKPLFKTDLCNTLSRI 819 Query: 118 LTIKN 122 KN Sbjct: 820 NVPKN 824 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDG 61 ILLAED++ R L G V + NG +A + +P + +L DI MP MDG Sbjct: 839 ILLAEDNELNREIAQTLLEMEGACVDTAENGQAAVEAFAGKPEGYYEAVLMDIRMPVMDG 898 Query: 62 IELARRATELDPDLKVMF-ITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 +E L+ + V + +A A + D A + L KP L + + Sbjct: 899 LEATAEIRLLEQERTVRVPVIALSANAFDEDRQMAYKAGIDEYLIKPVEAEQLYRLLQNI 958 Query: 118 L 118 L Sbjct: 959 L 959 >gi|218891438|ref|YP_002440305.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218771664|emb|CAW27438.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 961 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED R L L G+ V S +G A+++ + E F +++TD +MP MDG EL Sbjct: 833 ILLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYEL 892 Query: 65 ARR 67 ARR Sbjct: 893 ARR 895 >gi|171914500|ref|ZP_02929970.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 229 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD R L + L G+ VV +G A++ + + + D++MP +DG E Sbjct: 2 KILIAEDDSFTRAALCEVLSAEGFGVVPAADGREAWELFKSQRPDFVCLDVMMPHLDGYE 61 Query: 64 LARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + RR D + ++F+T A + L ++ ++KPF +R+++ + Sbjct: 62 VCRRIRRDDDTVPILFLTAKSEEIDAVLGLELGAD-----DYMAKPFGVREILARIR 113 >gi|167465417|ref|ZP_02330506.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383772|ref|ZP_08057523.1| two-component response regulator YkoH-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151984|gb|EFX44927.1| two-component response regulator YkoH-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 229 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD+ + L + L GY V N+G+ + E L++ D++MP +D Sbjct: 1 MREKILVVDDDEKITSMLRRGLAFEGYTVEVANDGSQGLRLMMEYDPQLMILDVMMPHVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 G E+ RR E D+ ++ +T ++ L KPF L + Sbjct: 61 GWEVCRRVREGGSDVPILMLTAKDEISDRVKGLDIGADDYLVKPFALEE 109 >gi|156743542|ref|YP_001433671.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM 13941] gi|156234870|gb|ABU59653.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM 13941] Length = 619 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD R L + L + G+ V+ NGA A + E LLL D++MPE+DG E+ Sbjct: 7 ILIADDDPGARLVLQRLLTREGHRVLMAQNGAEALRQSIEYTPDLLLLDVLMPEIDGFEV 66 Query: 65 ARRA---TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R+ T L ++ ++ IT + + ++KPF + +L+ V Sbjct: 67 CRQLRNHTRLR-EIPILLITSLGDQQSRVEGLSAGANGFITKPFDMAELLAHV 118 >gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp. HTCC2649] gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp. HTCC2649] Length = 237 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ ++R L +L AG+EVV+ G A + L + D+++P+MDG + Sbjct: 12 LLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGFAV 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ E L ++F+T +V ++KPF L ++V + +L Sbjct: 72 TRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVL 125 >gi|318080665|ref|ZP_07987997.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 253 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L AL G+E+ + +GA A +VR ++ D+V+P+MDG+ Sbjct: 20 RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 79 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PD V+F+T A A + +SKPF L ++V + L+ Sbjct: 80 VLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLI 134 >gi|307296804|ref|ZP_07576622.1| response regulator receiver protein [Sphingobium chlorophenolicum L-1] gi|306877717|gb|EFN08943.1| response regulator receiver protein [Sphingobium chlorophenolicum L-1] Length = 124 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DDD + + L AG+EV +GA+A + R+ LL+ D +MP M G ++ Sbjct: 4 ILVADDDDLLGELVRFKLEAAGHEVTIRQDGAAALEAARQGDVDLLVLDAMMPVMSGADV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + PD+ V+ +T A A + L+KPF +LV VN +L Sbjct: 64 LRAMGQEMPDIPVVMLTSRKAQADVMAALTSGARDYLTKPFIPDELVVRVNAIL 117 >gi|299145117|ref|ZP_07038185.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_23] gi|298515608|gb|EFI39489.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_23] Length = 1332 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM +FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1085 LLVVEDTTDMLKFLAKNLGNT-YTIHTATNGKEALECLETTTVDLIISDIVMPHMDGFEL 1143 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1144 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1198 Query: 118 L 118 L Sbjct: 1199 L 1199 >gi|289679741|ref|ZP_06500631.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae pv. syringae FF5] gi|330982369|gb|EGH80472.1| response regulator receiver:stage II sporulation E [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 394 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQIFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|312194802|ref|YP_004014863.1| response regulator receiver protein [Frankia sp. EuI1c] gi|311226138|gb|ADP78993.1| response regulator receiver protein [Frankia sp. EuI1c] Length = 128 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 14/124 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R+ ++ L G+EV +G +++ E +++ DI+MP +DG E Sbjct: 7 RVLVVDDDPTLRQLVVVNLELEGFEVHEAVDGQDCLERIHEIAPAVVTLDIMMPRVDGWE 66 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 +A R DP D+K++ +T A +++ + A+V L+KPF DL+ V Sbjct: 67 VASRLRG-DPATADIKLIVLT-----AATREADVRRGARVGVDYYLTKPFDPDDLIGVVQ 120 Query: 116 RLLT 119 RL++ Sbjct: 121 RLVS 124 >gi|262166041|ref|ZP_06033778.1| hypothetical protein VMA_002490 [Vibrio mimicus VM223] gi|262025757|gb|EEY44425.1| hypothetical protein VMA_002490 [Vibrio mimicus VM223] Length = 571 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD +M R +I+ LGK G +NG A D V+ + L+ D MPEMDG E Sbjct: 447 ILVADDIEMNRIIIQGMLGKLGITPDFSHNGVEALDAVQHTQYDLIFMDCRMPEMDGFEA 506 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ E + ++ +T + VLSKP+ L DL Sbjct: 507 SQHLREQGYNKPIIALTAGTTIHEKQHCIECGMNDVLSKPYRLEDL 552 >gi|227549025|ref|ZP_03979074.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078879|gb|EEI16842.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 225 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 54/113 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+AEDD + F+I+ L AGY ++G +A+ R + L++ D+ +P MDG Sbjct: 2 SRILIAEDDRGIADFIIRGLSSAGYACDVVDSGPAAFSSARTGDYDLMVLDLGLPHMDGA 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ + L L ++ +T + S + KPF +L+ V Sbjct: 62 DVLEQLRALRETLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVR 114 >gi|254039081|ref|ZP_04873131.1| nitrogen regulation protein NR [Escherichia sp. 1_1_43] gi|332282745|ref|ZP_08395158.1| nitrogen regulation protein NR(I) [Shigella sp. D9] gi|226838517|gb|EEH70546.1| nitrogen regulation protein NR [Escherichia sp. 1_1_43] gi|332105097|gb|EGJ08443.1| nitrogen regulation protein NR(I) [Shigella sp. D9] Length = 489 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 26 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 85 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 86 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 140 >gi|213967342|ref|ZP_03395490.1| response regulator [Pseudomonas syringae pv. tomato T1] gi|301381692|ref|ZP_07230110.1| response regulator [Pseudomonas syringae pv. tomato Max13] gi|302059646|ref|ZP_07251187.1| response regulator [Pseudomonas syringae pv. tomato K40] gi|302131538|ref|ZP_07257528.1| response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927643|gb|EEB61190.1| response regulator [Pseudomonas syringae pv. tomato T1] Length = 394 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 46/81 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQIFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITG 82 +EL R+ T + P V+ ++G Sbjct: 65 LELIRQVTAIAPQTPVIVVSG 85 >gi|163797321|ref|ZP_02191274.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159177412|gb|EDP61968.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 1047 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Query: 6 LLAEDDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL +D ++ RFL + L AG+ VVS NG A + V E F ++ DI MPE+DG+E Sbjct: 912 LLLVEDVEINRFLAERLLENAGHHVVSAVNGIEAVEAVERENFDAVVMDIQMPELDGVEA 971 Query: 65 ARRATE-LDP 73 +R + LDP Sbjct: 972 TKRIRQMLDP 981 >gi|170728910|ref|YP_001762936.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814257|gb|ACA88841.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 198 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +ILLAED +R L L G +EV+ +G A ++ + F LLLTDI MP G+ Sbjct: 2 RILLAEDQAMVRGALAALLSLDGEFEVIQACDGDQALSLLKAQTFDLLLTDIEMPGFTGL 61 Query: 63 ELARRATELDPDLKVMFITGFA 84 ELA+ + + +KV+ +T F Sbjct: 62 ELAQWCQQQNSTIKVIILTTFG 83 >gi|332662422|ref|YP_004445210.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331236|gb|AEE48337.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 229 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL +D+ + F+ K L YEV +G++ E PF L++ DI++P+ +G+ Sbjct: 2 KKILLVDDEVSVVNFIKKGLADENYEVSVAFDGSTGVKMALEAPFDLIILDIMLPDKNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDL 110 E+ + + ++F+T A VAL D A L KPF +L Sbjct: 62 EVCKEIRFGNIQTPILFLTALGASENVALGLDMGAD---DYLVKPFKFIEL 109 >gi|331682500|ref|ZP_08383119.1| TMAO reductase sytem sensor TorS [Escherichia coli H299] gi|331080131|gb|EGI51310.1| TMAO reductase sytem sensor TorS [Escherichia coli H299] Length = 904 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF++ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNSSGAQVVAVGNAAQALETLQNSEPFAVALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|283852719|ref|ZP_06369984.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] gi|283571897|gb|EFC19892.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] Length = 125 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +DD +R + L AGY V+ +G A + +P L++ DI MPEMDG+ Sbjct: 2 KTVLVVDDDPSIRALIRLYLEGAGYAVIEAADGRLAMSALAGQPVDLVVLDIFMPEMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 E+ + + KVM I+G +A + L+ +A VL KPF L+ + L+ Sbjct: 62 EVLQVLRDQCQSCKVMAISGGSAKIGLDLLDHATIFGADAVLEKPFGAARLLEKTAALI 120 >gi|270295020|ref|ZP_06201221.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274267|gb|EFA20128.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1317 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED +M+ F++K L + Y V++ NG A ++E +L+++DI+MPEMDG+EL Sbjct: 1073 LLVVEDSLEMQAFVVKQL-SSEYRVLTAVNGVEALKVLKEHTVNLVISDIMMPEMDGLEL 1131 Query: 65 ARR-ATELD 72 +ELD Sbjct: 1132 CEHLKSELD 1140 >gi|253775496|ref|YP_003038327.1| nitrogen regulation protein NR(I) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163819|ref|YP_003046927.1| nitrogen regulation protein NR(I) [Escherichia coli B str. REL606] gi|300931699|ref|ZP_07147006.1| nitrogen regulation protein NR [Escherichia coli MS 187-1] gi|242379405|emb|CAQ34219.1| NtrC transcriptional dual regulator, subunit of NtrC-Phosphorylated transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253326540|gb|ACT31142.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975720|gb|ACT41391.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli B str. REL606] gi|253979876|gb|ACT45546.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli BL21(DE3)] gi|300460538|gb|EFK24031.1| nitrogen regulation protein NR [Escherichia coli MS 187-1] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|255100919|ref|ZP_05329896.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306809|ref|ZP_05350980.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 232 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEM 59 M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E+ ++ L D+++P++ Sbjct: 1 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + E + ++ +T A + + KPF +++L+ V+ LL Sbjct: 61 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALL 119 >gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] Length = 236 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 16/127 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL ED+ ++ + L +AG+ VV N+ SA VRE L+L D ++P Sbjct: 1 MPANILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLPGAS 60 Query: 61 GIELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E AR RA E D+ ++ +T A+ + D ++KPF R+LV Sbjct: 61 GVEFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADD-------YVTKPFSPRELV 113 Query: 112 NEVNRLL 118 + +L Sbjct: 114 ARIKAVL 120 >gi|225013067|ref|ZP_03703482.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-2A] gi|225002795|gb|EEG40776.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-2A] Length = 233 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 10/126 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ EDD + L + L Y++ NG ++K +++ F L + D++MP DG Sbjct: 5 NKKILIVEDDPNFGSILKEYLIINDYDITLAKNGIEGFEKFKKDDFDLCILDVMMPYKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 LA+ E + + + F+T A N + K K+ L+KPF L+ ++ Sbjct: 65 FTLAKEIREKNDVIPIFFLT-----AKNLKEDVLKGFKIGADDYLTKPFDSDVLLAKIKA 119 Query: 117 LLTIKN 122 +L +N Sbjct: 120 ILNRQN 125 >gi|239617964|ref|YP_002941286.1| two component, sigma54 specific, transcriptional regulator, Fis family [Kosmotoga olearia TBF 19.5.1] gi|239506795|gb|ACR80282.1| two component, sigma54 specific, transcriptional regulator, Fis family [Kosmotoga olearia TBF 19.5.1] Length = 446 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ +DD L +AL GY V ++ SA + ++EE F L DI +P+ D Sbjct: 1 MKRKLLVVDDDMAFNLILCEALESEGYLVTKAHDLKSAKELLQEESFDCALLDIRLPDGD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL A + + VM G A++ N L KPF L + EV R L Sbjct: 61 GIELIDFARSQETIVIVMSAHGNIETAVSAVKKGAYN--FLEKPFDLNHALVEVERAL 116 >gi|194435181|ref|ZP_03067412.1| nitrogen regulation protein NR [Shigella dysenteriae 1012] gi|194416579|gb|EDX32717.1| nitrogen regulation protein NR [Shigella dysenteriae 1012] Length = 489 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 26 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 85 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 86 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 140 >gi|188579809|ref|YP_001923254.1| response regulator receiver sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179343307|gb|ACB78719.1| response regulator receiver sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 575 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 +L+ +DD +R LG+AGY++ +G A + +P L++ D MP M+G E Sbjct: 443 LLVVDDDAWVREVTATRLGEAGYDLREAASGLQALVALEADPCVDLVVLDFAMPGMNGAE 502 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 A + P++ V+F+TG+A + + A ++ KPF +L +V +L + Sbjct: 503 AATEIRKRWPEVPVLFVTGYADMEALTQAGAVGADAIVQKPFRDGELERKVAAILAAR 560 >gi|163851316|ref|YP_001639359.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163662921|gb|ABY30288.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 280 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMP-E 58 + +L+ ED+ +R L GY V+ +G A LLLTD+V+P + Sbjct: 139 SATVLVVEDEAAVREIACAILADLGYRVLEAADGEEALRVFGANTAAIDLLLTDVVLPGK 198 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G ELA R L P ++V+F++G+ ++ +++ KPF L +V ++L Sbjct: 199 VRGRELAERVQALRPQVRVVFMSGYTENSIVHHGRLDDGVQLIGKPFKREQLARKVAQVL 258 >gi|152990276|ref|YP_001355998.1| two-component response regulator [Nitratiruptor sp. SB155-2] gi|151422137|dbj|BAF69641.1| two-component response regulator [Nitratiruptor sp. SB155-2] Length = 214 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 8/118 (6%) Query: 4 KILLAEDD----DDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 KILL ED+ D + R+L K G++V + +G A++ +++ F LL+ DI +P + Sbjct: 2 KILLMEDEIILCDSIERYL----EKIGHQVTTAYDGEQAFELIQQSSFDLLILDINVPNI 57 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG L E V+FI+ + + KPFHL++L + +L Sbjct: 58 DGFTLMELLKEHKRYTPVIFISSLTDIEDITKGFELGCKDYIKKPFHLKELELRIEKL 115 >gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] Length = 244 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A E + LL+ D++MP +DG E Sbjct: 21 KLLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVMMPGLDGWE 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ V+F+T V L KPF +L+ V LL Sbjct: 81 VLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLL 135 >gi|187930424|ref|YP_001900911.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187727314|gb|ACD28479.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 1436 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED R + K L GY V +G A +++ E F LLTD MP MDG +L Sbjct: 1182 ILVAEDHPINRELIAKQLRLLGYRVTLAEDGVVALERLHEHRFDALLTDCHMPRMDGFDL 1241 Query: 65 AR--RATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 AR R E D P L ++ IT + A L KP L L ++ L T Sbjct: 1242 ARHIRHEEGDGPRLPIIAITATTLAEEHARCRAVGMDASLLKPTTLATLQEALSALCT 1299 >gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ ++ L +AL + GY V + GA+ Y+ + + LL+ D ++P G+E Sbjct: 2 RILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHYDLLILDWMLPHQSGVE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ + + ++F+T + + L KPF LR+L+ V LL Sbjct: 62 MCQQLRLKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALL 116 >gi|146309575|ref|YP_001190040.1| two component, sigma54 specific, Fis family transcriptional regulator [Pseudomonas mendocina ymp] gi|145577776|gb|ABP87308.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas mendocina ymp] Length = 446 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++++ +D+ +R + + L +G+ V +C + A A V + ++++D+ MP D Sbjct: 1 MSAQVIVVDDEAAIREAVQQWLELSGFTVRTCASAAEALAVVDRDFPGIVVSDVRMPGSD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L + ++D DL V+ +TG V + + + KPF L++ V R L Sbjct: 61 GLQLLDKLLQVDADLPVILVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRAL 118 >gi|108758444|ref|YP_631647.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK 1622] gi|108462324|gb|ABF87509.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK 1622] Length = 226 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 51/114 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED++ M L + LG+ G+ V +C A D+ E + ++ D +P MDG+ Sbjct: 2 RLLLVEDEERMANLLRRGLGEEGHLVDTCRTAEDALDQAGEVAYDAIILDWALPGMDGVA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L RR E V+ +T V L KPF +L+ + L Sbjct: 62 LLRRWRERGLMTPVLMLTARGTVGERVTGLRAGADDYLVKPFAFEELLARLEAL 115 >gi|17351926|gb|AAL38199.1|AF319443_1 putative response regulator RR23 [Listeria monocytogenes] Length = 225 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 57/118 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL ++ PD+ V+ +T A+A ++KPF +L+ + R + Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFQFVRCYGV 119 >gi|30064843|ref|NP_839014.1| nitrogen regulation protein NR(I) [Shigella flexneri 2a str. 2457T] gi|56480461|ref|NP_709666.2| nitrogen regulation protein NR(I) [Shigella flexneri 2a str. 301] gi|110807448|ref|YP_690968.1| nitrogen regulation protein NR(I) [Shigella flexneri 5 str. 8401] gi|30043103|gb|AAP18825.1| sensor glnL response regulator (nitrogen regulator I, NRI) [Shigella flexneri 2a str. 2457T] gi|56384012|gb|AAN45373.2| sensor glnL response regulator (nitrogen regulator I, NRI) [Shigella flexneri 2a str. 301] gi|110616996|gb|ABF05663.1| Nitrogen regulation protein NR(I) [Shigella flexneri 5 str. 8401] gi|281603256|gb|ADA76240.1| Nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Shigella flexneri 2002017] gi|313647093|gb|EFS11548.1| nitrogen regulation protein NR [Shigella flexneri 2a str. 2457T] gi|332751493|gb|EGJ81894.1| nitrogen regulation protein NR [Shigella flexneri K-671] gi|332753198|gb|EGJ83581.1| nitrogen regulation protein NR [Shigella flexneri 2747-71] gi|332764608|gb|EGJ94840.1| nitrogen regulation protein NR [Shigella flexneri 2930-71] gi|332997584|gb|EGK17199.1| nitrogen regulation protein NR [Shigella flexneri VA-6] gi|332998501|gb|EGK18099.1| nitrogen regulation protein NR [Shigella flexneri K-272] gi|332998554|gb|EGK18151.1| nitrogen regulation protein NR [Shigella flexneri K-218] gi|333013928|gb|EGK33290.1| nitrogen regulation protein NR [Shigella flexneri K-304] gi|333013996|gb|EGK33357.1| nitrogen regulation protein NR [Shigella flexneri K-227] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|21231863|ref|NP_637780.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768010|ref|YP_242772.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|21113583|gb|AAM41704.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573342|gb|AAY48752.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1002 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + L + GY + +GAS ++ + LL+TD+ +P M+ Sbjct: 884 ETVLVVDDEPSVRMLVADILEELGYTALQAVDGASGLSVLQSDVRIDLLITDVGLPGGMN 943 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A A P L V+FITG+A A+ VL+KPF + + + ++ Sbjct: 944 GRQMADAARIARPRLSVLFITGYAETAVLGAGQLAPGMAVLTKPFGIDAMAARIREMI 1001 >gi|148548783|ref|YP_001268885.1| response regulator receiver protein [Pseudomonas putida F1] gi|148512841|gb|ABQ79701.1| response regulator receiver protein [Pseudomonas putida F1] Length = 393 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G+ V+ +NG E L++ D+ MP+M G+EL Sbjct: 8 LLIIDDDDVVRASLAAYLEDSGFSVLQASNGQQGLQVFEEHQPDLVICDLRMPQMGGLEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 R+ +E P L V+ ++G ++ ++ A L KP L L + V R L Sbjct: 68 IRQVSERAPQLPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|188491727|ref|ZP_02998997.1| nitrogen regulation protein NR(I) [Escherichia coli 53638] gi|188486926|gb|EDU62029.1| nitrogen regulation protein NR(I) [Escherichia coli 53638] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|157163340|ref|YP_001460658.1| nitrogen regulation protein NR(I) [Escherichia coli HS] gi|312971845|ref|ZP_07786019.1| nitrogen regulation protein NR [Escherichia coli 1827-70] gi|157069020|gb|ABV08275.1| nitrogen regulation protein NR(I) [Escherichia coli HS] gi|310334222|gb|EFQ00427.1| nitrogen regulation protein NR [Escherichia coli 1827-70] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|313107492|ref|ZP_07793679.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310880181|gb|EFQ38775.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 961 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED R L L G+ V S +G A+++ + E F +++TD +MP MDG EL Sbjct: 833 ILLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYEL 892 Query: 65 ARR 67 ARR Sbjct: 893 ARR 895 >gi|299140847|ref|ZP_07033985.1| DNA-binding response regulator RprY [Prevotella oris C735] gi|298577813|gb|EFI49681.1| DNA-binding response regulator RprY [Prevotella oris C735] Length = 232 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L G+ C +G Y + + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGFAATLCPDGEVGYREFLKNKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV + +L Sbjct: 66 LAQEIRQANAEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|296388950|ref|ZP_06878425.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 961 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED R L L G+ V S +G A+++ + E F +++TD +MP MDG EL Sbjct: 833 ILLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYEL 892 Query: 65 ARR 67 ARR Sbjct: 893 ARR 895 >gi|254558670|ref|YP_003065765.1| sensor hybrid histidine kinase with PAS/PAC motif and response regulator receiver domains [Methylobacterium extorquens DM4] gi|254265948|emb|CAX21697.1| putative sensor hybrid histidine kinase with PAS/PAC motif and response regulator receiver domains [Methylobacterium extorquens DM4] Length = 681 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + +LL EDD+ + +++L + Y V+ N A A + + E +L +D+VMP M+ Sbjct: 559 ETVLLVEDDEQVLGMAVESLEELRYRVIVTRNAAEALEHLHGVERIDILFSDVVMPGGMN 618 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PD+K++ +G+ A VL+KP+ +L + +L Sbjct: 619 GSQLAVEARRVRPDIKILLTSGYVANLDEGQVIGQGELPVLNKPYRRDELARSLRLVL 676 >gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 227 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D+ R + K L GY V +C +G A + + ++L DI+MP+++G E Sbjct: 2 RVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+F+T A+ + KPFH +L+ + R+L +N Sbjct: 62 VLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARI-RVLIRRN 119 >gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1010 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 9/112 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ DMR +L + L K Y + + NG A +K+ L+++D++MPEMDGIE Sbjct: 629 RVLIVDDNADMRDYLQRLLEKQ-YYIETAANGKLALEKIATHQPELIISDVMMPEMDGIE 687 Query: 64 LARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L ATE P + V G A D A L+KPF ++L Sbjct: 688 LLHHVKHNPATESLPVILVSARAGEEATIEGYDIGAD---DYLTKPFSAKEL 736 >gi|254416315|ref|ZP_05030069.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176997|gb|EDX72007.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1474 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+A+D R L+ L G+EV+ NG + ++E +L D++MP++DG+ Sbjct: 1253 RKILIADDQWQNRSILVNLLLPLGFEVLEAINGEDCLQQAQQEHPDAILMDLIMPKLDGL 1312 Query: 63 ELARRATELDPDLKVMFITGFAA 85 E RR E+ P L+ + +A Sbjct: 1313 EATRRIREI-PSLRDTIVLAISA 1334 >gi|189464649|ref|ZP_03013434.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM 17393] gi|189436923|gb|EDV05908.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM 17393] Length = 1344 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDG+EL Sbjct: 1094 VLVVEDNSDIREYIKSSFADI-YEVITAKDGQEGWELTQARIPNVIVSDIMMPIMDGVEL 1152 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++ E + V+ +T ++ + A L+KPF + L + +N LL + Sbjct: 1153 CKKVKEDMRTSHIPVILLTAKDSLHDKEEGYASGADAYLTKPFSAKLLHSCINNLLETR 1211 >gi|172037422|ref|YP_001803923.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698876|gb|ACB51857.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 353 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 7/126 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D D + AL + G+++VS N+G SA ++ + P L+L D++MP MD Sbjct: 1 MNHYILVVDDIPDNLLLIQLALEQDGHQLVSVNDGFSALAQIDQCPPDLILLDVMMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G E+ + R P + ++ IT + V D+ A + KP + +L V Sbjct: 61 GYEVTQKIRQNSRLPYIPILLITAHEQSNVVKGLDTGAD---DFIRKPVQIDELQARVRS 117 Query: 117 LLTIKN 122 LL +K Sbjct: 118 LLRLKQ 123 >gi|146341588|ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194394|emb|CAL78419.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 731 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 50/95 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + + K L K G+ NG A V+++ + L+L D++MPEMDG+ Sbjct: 604 RILVAEDNLTNQFVIKKLLDKLGHSYELVENGTQAVAAVQKQTYDLILMDMMMPEMDGLT 663 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 R L P + ++I A A + D A +A Sbjct: 664 ATRMIRSLPPPAQDIYIIALTANATSQDHLACTDA 698 >gi|126699391|ref|YP_001088288.1| two-component response regulator [Clostridium difficile 630] gi|115250828|emb|CAJ68652.1| Two-component response regulator [Clostridium difficile] Length = 244 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEM 59 M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E+ ++ L D+++P++ Sbjct: 13 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDI 72 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + E + ++ +T A + + KPF +++L+ V+ LL Sbjct: 73 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALL 131 >gi|89093888|ref|ZP_01166833.1| response regulator [Oceanospirillum sp. MED92] gi|89081774|gb|EAR61001.1| response regulator [Oceanospirillum sp. MED92] Length = 655 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD + R L + + GY V + A D + + F L++TD MPEM G EL Sbjct: 6 ILIVDDDPSILRALKRIFRREGYSVYAALGAKEALDLMGDRQFPLIITDFRMPEMTGAEL 65 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A + +P + + ++G A + +L N+ + L KP+ +LV EV Sbjct: 66 LIEAKKRNPKVLGIVLSGLADMQSLIFSLNSGAVHRFLEKPWDEIELVTEV 116 >gi|119773267|ref|YP_926007.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119765767|gb|ABL98337.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella amazonensis SB2B] Length = 460 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V +++R F L++ DI +P GIE Sbjct: 17 VLIVDDEPGMRSFLNKALSKK-FALVETAGSVEEAEQLRSRCHFDLIIVDIRLPGRSGIE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ D ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 76 WHEALSDEDRRSDIIFMTGYADMEVAIQALRAGASDFIMKPFHLEQMLKAVDRAI 130 >gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1236 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 14/126 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-- 62 +LL ED+ ++ + L AGYEVV +NG A D + +PF +L DI MP MDG+ Sbjct: 1112 VLLVEDNFINQQVASELLKSAGYEVVIADNGQVALDVIDSKPFDAVLMDIQMPVMDGLTA 1171 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSN----APKNAKVLSKPFHLRDLVNEVNR 116 EL +R ++ + M I A A++ D A NA + +KP L +L ++ Sbjct: 1172 TAELRKRYSK-----QQMPIIAMTAHAMSGDKEKSLAAGMNAHI-TKPIVLTELFETLSH 1225 Query: 117 LLTIKN 122 + K+ Sbjct: 1226 WIAYKH 1231 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N L+ +D+ + + + V + ++G A D +R++P LLL D +MPEM+G Sbjct: 966 NLTTLVVDDNPSALQIYSTLMTDFSFGVNTADSGQKALDILRKKPVDLLLLDWMMPEMNG 1025 Query: 62 IELARRATELDPDLK------VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ + E+ D ++ +T +AA L+ + VL KPF L +E+ Sbjct: 1026 CDVIKAIDEMVADGSIAKRPIIILMTAYAAEPLDHELQKNSVYAVLQKPFKASALFDEI 1084 >gi|333025862|ref|ZP_08453926.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332745714|gb|EGJ76155.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 240 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L AL G+E+ + +GA A +VR ++ D+V+P+MDG+ Sbjct: 7 RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PD V+F+T A A + +SKPF L ++V + L+ Sbjct: 67 VLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLI 121 >gi|331655551|ref|ZP_08356543.1| nitrogen regulation protein NR(I) [Escherichia coli M718] gi|331046652|gb|EGI18737.1| nitrogen regulation protein NR(I) [Escherichia coli M718] Length = 472 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123 >gi|310815778|ref|YP_003963742.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Ketogulonicigenium vulgare Y25] gi|308754513|gb|ADO42442.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Ketogulonicigenium vulgare Y25] Length = 457 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E L+++D++MP+ + Sbjct: 2 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVIMPDGN 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G++ + + P L V+ I+ + + L KPF L DL+ R L + Sbjct: 62 GLDQLPKIAKSRPGLPVIVISAQNTIMTAIQAAEADAFDYLPKPFDLPDLMRRAARALEV 121 Query: 121 KN 122 K Sbjct: 122 KR 123 >gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 235 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +DD D+ L L K GY+V + +G A + R L+L DI+MP +DGI Sbjct: 11 HRVLVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVARTYMPELVLLDIMMPHLDGI 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E R+ ++ P+L+ +I A + A + ++KP R L++ +N L Sbjct: 71 EAGRQLRDI-PELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALF 128 >gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 15/118 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ +R + L GYEV++ +G A ++ E+P +L+ D+++P+ D Sbjct: 1 MMMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQP-DVLILDVMLPDTD 59 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G EL R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 60 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI 110 >gi|218781770|ref|YP_002433088.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763154|gb|ACL05620.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 682 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL +D++ + R L + GY V + A A V E+P F L++TD+ MP M Sbjct: 561 ESILFVDDEESIARTNQIRLERLGYSVTEALDPAKALSMVEEDPLRFDLVITDLTMPGMK 620 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R ++ PDLK + +G+ + + LSKP DL V + L Sbjct: 621 GDRLIRLIRKIRPDLKCILCSGYNDAVSDEAIEEIGASAWLSKPAKGLDLARIVRKTL 678 >gi|153005118|ref|YP_001379443.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] gi|152028691|gb|ABS26459.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] Length = 509 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D R L + L + YEV+ +G +A D REE ++L D+ MP +DG++ Sbjct: 195 RLLVVDDEADAREVLTEVL-EPEYEVMLAEDGEAAVDLAREEHPDVVLMDLFMPRLDGLQ 253 Query: 64 -LAR-RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R R+ D+ V+F++G A+ S L KPF R+L V R L + Sbjct: 254 ALERLRSDASTSDIPVIFVSGHGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 312 >gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1188 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEVV NG A D V PF +L DI MP MDG+ Sbjct: 1066 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIVDSRPFDAVLMDIQMPVMDGLTA 1125 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN----APKNAKVLSKPFHLRDLVNEVNRLLTI 120 AR E V+ I A A++ D A NA + +KP L +L + + Sbjct: 1126 ARALRE-RYSADVLPIIAMTAHAMSGDREKSLAAGMNAHI-TKPIVLTELFETLTHWIKH 1183 Query: 121 KN 122 K+ Sbjct: 1184 KH 1185 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK------VMFI 80 +EV + +GA A K+ +P LLL D +MPEMDG ++ + + + ++ + Sbjct: 943 FEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGSDVISAIDTMVAEGRIAKRPIIIMM 1002 Query: 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 T +AA L + ++ VL KPF L +E+ Sbjct: 1003 TAYAAEPLLHEVDSANVFAVLQKPFKASSLFDEI 1036 >gi|118580029|ref|YP_901279.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] gi|118502739|gb|ABK99221.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] Length = 121 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I+ A+D +R+ + L + GY VV +G A +K+ + +LLTD+ MP +D Sbjct: 1 MAKVIMTADDSASVRQMVAFTLKQNGYTVVEAVDGRDALNKLNAQKVDMLLTDLNMPNLD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI L + RA L+ + ++ +T + + + A + KPF L+ + ++L Sbjct: 61 GIGLIKGVRAGSLNKFIPIVMLTTESQDSRKAEGKAAGATGWIVKPFKPEQLIAVIKKVL 120 >gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101] Length = 234 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDD +R + +AL G+ V + NG SA+D + + + L++ D+++P ++G++ Sbjct: 12 RLLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLMLPGINGLD 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L R+ + ++ ++ A + +++ +V L KPF +R+LV LL Sbjct: 72 LCRQLRQGSTPPLILVVS-----ARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALL 126 >gi|291301247|ref|YP_003512525.1| response regulator receiver and ANTAR domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570467|gb|ADD43432.1| response regulator receiver and ANTAR domain protein [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 6/112 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+AED+ +R L + L + G+EVV +G +A E+ L++ DI MP MDG Sbjct: 11 RRVLIAEDEGLIRLDLAEMLAEEGFEVVGEAADGETAVKLAEEKRPDLVICDIQMPIMDG 70 Query: 62 IELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ A R A + P V+ +T F+ L +N+ L KPF DLV Sbjct: 71 LQAAERIVAARIAP---VVILTAFSQRDLIARANSAGAMAYLVKPFQKSDLV 119 >gi|237711646|ref|ZP_04542127.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454341|gb|EEO60062.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 964 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ DMR ++ L K Y++ NGA A ++ E L+++D++MP MDG Sbjct: 714 ETILIVEDNADMRTYICSIL-KNNYQLKEAQNGAEALYLIQRETIDLIVSDLMMPVMDGN 772 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL+R +A + + +T + A S + L KPF +EV L I Sbjct: 773 ELSRQVKANLATSHIPFLMLTALRSEAQERISYEIGVDEYLCKPF------DEVILKLRI 826 Query: 121 KN 122 +N Sbjct: 827 RN 828 >gi|237734077|ref|ZP_04564558.1| signal transduction regulator [Mollicutes bacterium D7] gi|229382903|gb|EEO32994.1| signal transduction regulator [Coprobacillus sp. D7] Length = 229 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++I + EDD+++R + AL GYEVV +N A ++ ++ SL + D+++P+M Sbjct: 3 MGERIFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPKMS 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+ + E D +L ++ ++ + + ++KPF + +L V LL Sbjct: 63 GIDAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLL 120 >gi|262201785|ref|YP_003272993.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085132|gb|ACY21100.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 224 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GY G +A ++ + F LL+ D+ +PE+DG+E Sbjct: 4 VLLAEDDAAIAEPLARALSREGYGCEVVTTGTAALEQAMDNRFELLILDLGLPEVDGLEA 63 Query: 65 ARRATELDPDLKVMFIT 81 RR P L V+ +T Sbjct: 64 CRRIRTQRPALAVLMLT 80 >gi|225389294|ref|ZP_03759018.1| hypothetical protein CLOSTASPAR_03040 [Clostridium asparagiforme DSM 15981] gi|225044652|gb|EEG54898.1| hypothetical protein CLOSTASPAR_03040 [Clostridium asparagiforme DSM 15981] Length = 556 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +I+L +D++++R+ +IK + AG++VV NG A +++ ++LTDI MP MD Sbjct: 16 RIILVDDEEEVRKSIIKKIDWNAAGFQVVGDAENGEEALERIEALEPDVVLTDIRMPYMD 75 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ LA + + P K++ +G+ + + + KP ++ +L + R+ Sbjct: 76 GLTLAEKVRQRFPSTKIVIFSGYDDFEYAKQAIKLNVTEYILKPVNVEELTAILKRI 132 >gi|170720868|ref|YP_001748556.1| response regulator receiver modulated serine phosphatase [Pseudomonas putida W619] gi|169758871|gb|ACA72187.1| response regulator receiver modulated serine phosphatase [Pseudomonas putida W619] Length = 412 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ +L+ +DDD +R L L +G+ V+ NG E L++ D+ MP+M Sbjct: 22 ISATLLIIDDDDVVRASLAAYLEDSGFSVLQAGNGQQGLQVFEEHQPDLVICDLRMPQMG 81 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 G+EL R+ +E P L V+ ++G ++ ++ A L KP L L + V R L Sbjct: 82 GLELIRQVSERAPQLPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 140 >gi|153852945|ref|ZP_01994382.1| hypothetical protein DORLON_00367 [Dorea longicatena DSM 13814] gi|149754587|gb|EDM64518.1| hypothetical protein DORLON_00367 [Dorea longicatena DSM 13814] Length = 550 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 3 QKILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 +K LLA+DD +R +L + + KAG+E+ + +G A + + E L++TDI MP M Sbjct: 2 RKALLADDDFLVRSYLKMLSSWEKAGFEITADVRDGEEALEVLDREKIDLVVTDIAMPLM 61 Query: 60 DGIELARRATELDPDLKVMFIT 81 DGIEL R PD+ V+ ++ Sbjct: 62 DGIELIREIRRKYPDIYVIVLS 83 >gi|197118087|ref|YP_002138514.1| PAS/PAC domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197087447|gb|ACH38718.1| sensor histidine kinase response regulator, PAS and PAC domain-containing protein [Geobacter bemidjiensis Bem] Length = 571 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++IL +D++ + L GY VV+ N+ A + R +P F L++TD+ MP + Sbjct: 446 SERILFVDDEESLTVLGKGILDALGYSVVTTNSSRRALEMFRADPAIFDLVITDLTMPGL 505 Query: 60 DGIELARRATELDPDLKVMFITGF 83 G LA+ L PDL ++ TG+ Sbjct: 506 AGKALAKEIHALRPDLPIILCTGY 529 >gi|89901510|ref|YP_523981.1| response regulator receiver domain-containing protein [Rhodoferax ferrireducens T118] gi|89346247|gb|ABD70450.1| response regulator receiver domain protein [Rhodoferax ferrireducens T118] Length = 139 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ +R ++ L +V +G A + ++PF ++L D+ MP MDG+ Sbjct: 6 KILVVDDEEVVRLSYLRTLSGQHCKVDVVADGKDALQMMSQQPFDVVLLDLRMPGMDGMT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + + P+ +V+ ITG+ AV + L+KP D++N N Sbjct: 66 VLKTIKQKWPESEVIIITGYPAVESAKAAVTLGAYGYLAKPVGPDDVINAAN 117 >gi|28869320|ref|NP_791939.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852561|gb|AAO55634.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 394 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ +DDD +R L L +G+ V+ +NG +E L++ D+ MP+M G Sbjct: 5 SAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQIFEQENPDLVVCDLRMPQMGG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 +EL R+ T + P V+ ++G ++ ++ A L KP L L + V R L Sbjct: 65 LELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 245 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD R + L +GY V++ N+G A V L++TDIVMP M+ Sbjct: 19 MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEAYHPDLIVTDIVMPRMN 78 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL RR + P L V+ +T L KPF L +L + LL Sbjct: 79 GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 138 >gi|318060761|ref|ZP_07979484.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 256 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L AL G+E+ + +GA A +VR ++ D+V+P+MDG+ Sbjct: 23 RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 82 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + PD V+F+T A A + +SKPF L ++V + L+ Sbjct: 83 VLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLI 137 >gi|313677618|ref|YP_004055614.1| response regulator receiver protein [Marivirga tractuosa DSM 4126] gi|312944316|gb|ADR23506.1| response regulator receiver protein [Marivirga tractuosa DSM 4126] Length = 520 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL A+D+ D+ + I L GY++ NNG+ A D +E+ F ++ D MP M G Sbjct: 3 NYQILWADDEIDLLKPHIIFLENKGYQITPVNNGSEAVDLCKEQKFDVVFLDENMPGMTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E +P+ V+ IT + ++ K A L KP + ++ V ++L Sbjct: 63 LEALSLIKSNNPNTPVVMITKSEEEYIMEEAIGSKIADYLIKPLNPNQILLSVKKIL 119 >gi|302338433|ref|YP_003803639.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301635618|gb|ADK81045.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 125 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 5/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++LL +D MR L + L +AG+ + NG A R SL+L DI MP M Sbjct: 1 MERRLLLVDDLSFMRSALKEILEEAGFSIAGEAANGVEAITLYRTVHPSLVLMDITMPVM 60 Query: 60 DGIELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DGIE RR LDP V+ + G L K+ V KPF +V+ V + Sbjct: 61 DGIEALRRIRRLDPSAMVVMCSALGQEKTILRAIQYGAKDFVV--KPFSKARIVSAVEKA 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|301057797|ref|ZP_07198866.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300448108|gb|EFK11804.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 256 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K L+ ++D FL + L GYEVV +G K+ E F +L D++MP++D Sbjct: 1 MAKKALVVDNDFFFVEFLTELLESKGYEVVKAYDGKEGVSKLEESVFDVLFADLIMPKID 60 Query: 61 GIELARRATELDP--DLKVMFITG 82 GI+L R A + P L ++ ++G Sbjct: 61 GIQLIRFARKKIPPGQLNIVAVSG 84 >gi|301060591|ref|ZP_07201426.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] gi|300445294|gb|EFK09224.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] Length = 449 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 51/101 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L L + GY V +G +A V + ++L D+ MP MDG+E Sbjct: 7 ILVVDDEAAIRESLKDWLMEDGYGVALAADGKTAVAMVEGSQYDVILLDLKMPGMDGLET 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 R E+ PD +++ +T +A+V + L KPF Sbjct: 67 MRCIKEISPDSEILMMTAYASVDTAVQAMKEGAFDYLVKPF 107 >gi|296134405|ref|YP_003641652.1| response regulator receiver protein [Thermincola sp. JR] gi|296032983|gb|ADG83751.1| response regulator receiver protein [Thermincola potens JR] Length = 133 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 1 MNQKILLAEDDDDM--RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M +K+ L DD M RR L +A + Y V +G A DK++++ ++L D+ MP Sbjct: 1 MTKKVELLVVDDQMGVRRLLFEAFRQDDYNVELAGSGLEAIDKIKQKKPDVILMDMKMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 M+G+E + +LD + ++ +T + V + ++ + ++KPF LR++V +V Sbjct: 61 MNGLETLKEIKKLDFNPNIIMMTAYGEVDIVSEAMNLGVKEYVTKPFDINELREMVKKV 119 >gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 KIL+ ED+ +R F+ L + GYEV+ GA A +K+ E+ SL L DI++P+ GI Sbjct: 3 KILILEDEIGIRSFVSINLKREGYEVIEAGTGAEAIEKLSTEKNISLALLDIMLPDTSGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + + ++ V+ +T + + + KPF +++L+ V L+ Sbjct: 63 EICKYIRKEFDNMGVIMLTAKSQEDDKIEGFQSGADDYIVKPFSIKELLMRVQALI 118 >gi|259047260|ref|ZP_05737661.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259036036|gb|EEW37291.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 235 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 53/114 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD +R + L + Y + NG A + + LL++DI+MP MDG L Sbjct: 12 ILVAEDDHAIRTLITTKLKQENYTIYVAENGEEALSLMEKHQVDLLISDIMMPVMDGYAL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E L ++ IT + + ++ + KP L +LV V LL Sbjct: 72 VKALRETKHTLPILMITAKSQLESLEEAFKLGVDDYMVKPIRLTELVLRVQALL 125 >gi|258621314|ref|ZP_05716348.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258586702|gb|EEW11417.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 571 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD +M R +I+ LGK G +NG A D V+ + L+ D MPEMDG E Sbjct: 447 ILVADDIEMNRIIIQGMLGKLGITPDFSHNGVEALDAVQHTQYDLIFMDCRMPEMDGFEA 506 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ E + ++ +T + VLSKP+ L DL Sbjct: 507 SQHLREQGYNKPIIALTAGTTIHEKQHCIECGMNDVLSKPYRLEDL 552 >gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family [Halothiobacillus neapolitanus c2] Length = 230 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ ED+ +R + ALG+AGY+++ ++ + A++++ + L+L D ++P G Sbjct: 3 RKTILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQLSHKLPDLVLLDWMLPGASG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE ARR E+ D+ ++ +T ++KPF R+L+ + +L Sbjct: 63 IEFARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVL 121 >gi|298530015|ref|ZP_07017417.1| response regulator receiver modulated serine phosphatase [Desulfonatronospira thiodismutans ASO3-1] gi|298509389|gb|EFI33293.1| response regulator receiver modulated serine phosphatase [Desulfonatronospira thiodismutans ASO3-1] Length = 376 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 5/105 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED R+FLI+ LG +E+ +G A DK ++L DI MP MDG+E Sbjct: 5 KLLIAEDSSINRKFLIRLLGDE-FEIEESCDGEEAVDKFAAFAPDIVLLDIHMPVMDGLE 63 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 + R R T +D D+ ++ +TG + + ++ N N VL KPF Sbjct: 64 VIRHIRNTSVDRDVFILVLTGEESTEVKVEALNQGANDFVL-KPF 107 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas arsenicoxydans] Length = 229 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + L +AL +AGY V +NG A + + ++L+L DI +P+MDG+ Sbjct: 2 RILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGLA 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR E + V+ +T A + L D ++KPF L + V Sbjct: 62 VLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADD-------YMTKPFDLLEFEARVRA 114 Query: 117 LL 118 L+ Sbjct: 115 LI 116 >gi|70730688|ref|YP_260429.1| response regulator [Pseudomonas fluorescens Pf-5] gi|68344987|gb|AAY92593.1| response regulator [Pseudomonas fluorescens Pf-5] Length = 443 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 5/111 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++ + L + L Y+V+ N+GA A + + E P L+++D MP MDG Sbjct: 14 RVLLVDDEESILNSLKRLLRPEPYDVLLANSGARALEILAEGPVDLVMSDARMPGMDGAA 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLV 111 L R E P ++ + +TG+A LN A + ++ LSKP++ +L+ Sbjct: 74 LLARVREKYPAVRRILLTGYA--DLNTIIKAVNDGQIHQYLSKPWNDEELL 122 >gi|73537484|ref|YP_297851.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Ralstonia eutropha JMP134] gi|72120821|gb|AAZ63007.1| Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Ralstonia eutropha JMP134] Length = 763 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R EPF L++TDI MP MDGI Sbjct: 640 KRVLVVDDSLTVRELERKLLASRGYDVAVAVDGMDGWNVLRAEPFDLVITDIDMPRMDGI 699 Query: 63 EL 64 EL Sbjct: 700 EL 701 >gi|27380788|ref|NP_772317.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27353953|dbj|BAC50942.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 941 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMP-EM 59 ++KIL+ EDD +R++++ + GY + N A A + ++ LL TD++MP M Sbjct: 821 SEKILIVEDDALVRQYVVTQIKSLGYAALEAANAADALTIIDADKDIDLLFTDVIMPGAM 880 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +G +LA A PDLK +F +G+ A+ +L+KP+ +L Sbjct: 881 NGRQLADEAARRRPDLKTLFTSGYTENAIVHHGRLDSGVLLLAKPYRKSEL 931 >gi|91225868|ref|ZP_01260837.1| chemotaxis CheV [Vibrio alginolyticus 12G01] gi|254230143|ref|ZP_04923538.1| CheV [Vibrio sp. Ex25] gi|262394944|ref|YP_003286798.1| chemotaxis protein CheV [Vibrio sp. Ex25] gi|269965429|ref|ZP_06179548.1| chemotaxis protein CheV [Vibrio alginolyticus 40B] gi|91189518|gb|EAS75794.1| chemotaxis CheV [Vibrio alginolyticus 12G01] gi|151937336|gb|EDN56199.1| CheV [Vibrio sp. Ex25] gi|262338538|gb|ACY52333.1| chemotaxis protein CheV [Vibrio sp. Ex25] gi|269829908|gb|EEZ84138.1| chemotaxis protein CheV [Vibrio alginolyticus 40B] Length = 308 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EVVS +G AY+K+ E + SL+++DI Sbjct: 182 RRILIADDSTVARKQVERAITSIGFEVVSVKDGKEAYNKLIEMAQEGNIYDQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR +L DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHADLK-DLYVILHSSLSGV 275 >gi|330830875|ref|YP_004393827.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aeromonas veronii B565] gi|328806011|gb|AEB51210.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aeromonas veronii B565] Length = 122 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ + L AGYEV+ ++G A +K+ + +L+++D+ MP MD Sbjct: 1 MGKTILIVDDSATIRQVVGMTLKGAGYEVMEASDGKDALNKLDGKKINLIISDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI + A +L + K V+ +T + + + A + KPF ++ V +L Sbjct: 61 GITFVKEAKKL-ANYKFTPVIMLTTESQDSKKQEGQAAGAKAWVVKPFQPEQMLAAVAKL 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|307825216|ref|ZP_07655436.1| response regulator receiver protein [Methylobacter tundripaludum SV96] gi|307733672|gb|EFO04529.1| response regulator receiver protein [Methylobacter tundripaludum SV96] Length = 122 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I++ +D MR+ + AL AGYEV+ ++G A K+ L+++DI MP MD Sbjct: 1 MAKTIMIVDDSASMRQVVGIALKGAGYEVIEASDGKDALGKLNGVKIHLIVSDINMPVMD 60 Query: 61 GIELARRATELD 72 GI + +LD Sbjct: 61 GIAFVKAVKQLD 72 >gi|241764052|ref|ZP_04762091.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] gi|241366657|gb|EER61129.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] Length = 742 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 10 DDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGIELAR 66 DDD FL+ + L + GYEV + A +R P + LL+TD MP G++L R Sbjct: 622 DDDQALVFLVQRLLRRRGYEVSGFTDPHEATAALRAAPQAYDLLVTDYNMPGFCGVDLVR 681 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A + PDL V +G+ + + A ++ KP + +L V RL++ Sbjct: 682 EARLIRPDLPVALASGYVTAEIEQAALAEGARALIHKPNDVEELCATVQRLVS 734 >gi|229824528|ref|ZP_04450597.1| hypothetical protein GCWU000282_01872 [Catonella morbi ATCC 51271] gi|229785899|gb|EEP22013.1| hypothetical protein GCWU000282_01872 [Catonella morbi ATCC 51271] Length = 552 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKA--GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +K++ +D+ + + ++ + A GYE+V + +NG A + E +++TDI MP M Sbjct: 5 RKLVFVDDETFVLQSIVNLMDWASLGYELVGTASNGQEALAIIEETCPDVVITDICMPLM 64 Query: 60 DGIELARRATELDPDLKVMFITG 82 DG EL++ E DP +K++FI+G Sbjct: 65 DGFELSQAIYEFDPTIKIIFISG 87 >gi|218556427|ref|YP_002389341.1| nitrogen regulation protein NR(I) [Escherichia coli IAI1] gi|218363196|emb|CAR00838.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator ; sigma54 interaction protein [Escherichia coli IAI1] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|254482534|ref|ZP_05095773.1| sigma-54 interaction domain family protein [marine gamma proteobacterium HTCC2148] gi|214037225|gb|EEB77893.1| sigma-54 interaction domain family protein [marine gamma proteobacterium HTCC2148] Length = 479 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ ED+ +R L + L ++GY V + A F L+++D+ +P G Sbjct: 2 QQILVVEDESVIRTALRRLLERSGYGVSEAGSVQQAESDHSFNDFDLIISDLRLPGAPGT 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L ++A D+ V+ +T +A++ DS ++KPF D+VN V R++ Sbjct: 62 DLIKKAG----DVPVLIMTSYASLRSAVDSMRMGAVDYIAKPFDHGDMVNAVERII 113 >gi|197103592|ref|YP_002128969.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] gi|196477012|gb|ACG76540.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] Length = 586 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 17/127 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED++ + L LG+ G EV +G A + R+ PF L+L D+ MP MDG+ Sbjct: 452 RVLVAEDNETNQLVLKTLLGQLGVEVEMTADGHEAVEAWRQGPFDLILMDVQMPVMDGLA 511 Query: 64 LARRATELDPDLKVMFITGFA---AVALNPDSNAPKNAK--------VLSKPFHLRDLVN 112 RR E++ TG A VAL ++ + + V +KP L LV Sbjct: 512 ATRRIREIEAQ------TGRARTPIVALTANAMSHHLVEYAQAGMDGVTAKPIELSRLVE 565 Query: 113 EVNRLLT 119 ++N L+ Sbjct: 566 QMNVALS 572 >gi|237702900|ref|ZP_04533381.1| nitrogen regulation protein NR(I) [Escherichia sp. 3_2_53FAA] gi|91074988|gb|ABE09869.1| nitrogen regulation protein NR(I) [Escherichia coli UTI89] gi|226902837|gb|EEH89096.1| nitrogen regulation protein NR(I) [Escherichia sp. 3_2_53FAA] Length = 489 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 26 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 85 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 86 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 140 >gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1459 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++LL ED+ R+ L + L G +V +C+ A A + + F L L D +P+ DG+ Sbjct: 1071 QRVLLVEDNASQRQLLARLLQSWGMQVTACSTVAEAQAIAKAQTFELALVDTSLPDGDGL 1130 Query: 63 ELARRATELDPDLK-VMFITGFAAVA 87 LAR + P L+ V+ + AA+A Sbjct: 1131 ALARALQQEQPPLRLVLLVDRRAALA 1156 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 3/106 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++ + L + GY+ NG A ++ + L+L D+ MPE+DG+ Sbjct: 1202 RILVAEDNPVNQKVIRLMLERLGYQPDIVANGLEALQALQLRAYDLVLMDLHMPELDGLA 1261 Query: 64 LARRA-TELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 RR +EL P+ +++ +T A + + A L+KP Sbjct: 1262 ATRRIRSELPPERQPRILALTADAFLESRAAAEAAGVDGYLTKPLQ 1307 >gi|75909608|ref|YP_323904.1| response regulator receiver domain-containing protein [Anabaena variabilis ATCC 29413] gi|75703333|gb|ABA23009.1| Response regulator receiver domain protein (CheY) [Anabaena variabilis ATCC 29413] Length = 127 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 44/81 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+DD+D R L L + G+EV NG A +KV EE LL+ D MPE+ G+E Sbjct: 10 KVLIADDDEDSRMMLSFVLQEEGWEVYEACNGKEALEKVIEEKPDLLILDNRMPELSGVE 69 Query: 64 LARRATELDPDLKVMFITGFA 84 + + + V+ T + Sbjct: 70 VYQYLQAEGIHIAVVLATAYG 90 >gi|148262470|ref|YP_001229176.1| histidine kinase [Geobacter uraniireducens Rf4] gi|146395970|gb|ABQ24603.1| histidine kinase [Geobacter uraniireducens Rf4] Length = 356 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 10/124 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREE--PFSLLLTDIVMP- 57 IL+ +D++ +R + L GY+ +C NGA A Y RE PFS ++ D+ +P Sbjct: 226 SILVMDDEEFIRDITTEMLEYLGYQATACENGAEAIVQYKAARESGVPFSAVIMDLTIPG 285 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G E A++ ++DP ++ +G++ + D +A ++KP+++ E +L Sbjct: 286 GMGGKEAAQQILDIDPKACLIVSSGYSNDPVMADYSAYGFNGAIAKPYNM----TEFGQL 341 Query: 118 LTIK 121 L+ K Sbjct: 342 LSSK 345 >gi|187733434|ref|YP_001882566.1| nitrogen regulation protein NR(I) [Shigella boydii CDC 3083-94] gi|187430426|gb|ACD09700.1| nitrogen regulation protein NR(I) [Shigella boydii CDC 3083-94] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family [Prosthecochloris aestuarii DSM 271] Length = 236 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD ++ + L L KAGY+ +G A D ++ + + ++L DI++P MDG E+ Sbjct: 6 ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIMLPGMDGFEV 65 Query: 65 AR--RATELDPDLKVMFIT 81 R R +L DL ++ +T Sbjct: 66 CRKVRQHQLYKDLPIIMLT 84 >gi|332706485|ref|ZP_08426546.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332354369|gb|EGJ33848.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 230 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD R + L +GY V++ NG A + LL+TDI MP +DG EL Sbjct: 5 ILVADDDLGTRLSVSDYLEMSGYSVITAENGQQALSMIETYHPHLLVTDINMPRIDGYEL 64 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ + P L V+F+T + L KPF + +L + LL Sbjct: 65 VRKVRQKPPLRLLPVVFLTELNSTNQRIKGYQSGCDVYLPKPFEMEELGAVIQSLL 120 >gi|332519303|ref|ZP_08395770.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] gi|332045151|gb|EGI81344.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] Length = 1477 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +N+ IL+AEDD +R L G V+ NG A + + P ++L DI MPEM Sbjct: 1358 LNKNILIAEDDSLIRLLFKIVLKDTGVNVLFAKNGKEAVELYKSTPNIDVVLLDIRMPEM 1417 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE +L+P+ K++ T +A LSKP +L ++++ Sbjct: 1418 SGIEAMEIILKLNPEAKIIMQTAYAMQDEKEKCYHKGCVDFLSKPIVKEELFTKLSK 1474 >gi|325261849|ref|ZP_08128587.1| DNA-binding response regulator [Clostridium sp. D5] gi|324033303|gb|EGB94580.1| DNA-binding response regulator [Clostridium sp. D5] Length = 515 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMP 57 M KIL+AED+ +R+ +I LG G V + +G A + + +L+TDI MP Sbjct: 1 MLMKILVAEDEPAIRQGIISLLGNLGLAVEITGAAEDGMEALELMAATKPDVLITDIRMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFA 84 M GIEL +A +L PD + + ++G++ Sbjct: 61 GMSGIELIGKAKKLYPDTEYVILSGYS 87 >gi|322380550|ref|ZP_08054716.1| transcriptional regulator [Helicobacter suis HS5] gi|321147012|gb|EFX41746.1| transcriptional regulator [Helicobacter suis HS5] Length = 213 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+ L EDD + R L + L AG+ VVS + A D + ++ F LLL D+ +PE + Sbjct: 2 KKLFLLEDDVLLHRMLEEFLKHAGFVVVSAYDKTPAMDILSQQHFDLLLLDVQVPEGNSF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + +L+ +FI+ + + + + L KPF L +L + RLLT Sbjct: 62 QILQILRDLNIATPAIFISVCSDMQTLRQAFHAGASDYLKKPFDLEELYLRMERLLT 118 >gi|313159142|gb|EFR58517.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 392 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 13/119 (10%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD L+KA L +A Y++V+ + G A +K +E L+L DI+MP++DG E+ Sbjct: 13 ILAVDDIATNIMLLKAVLSRAKYKIVTASGGYEAIEKASKEAPDLILLDIMMPDLDGYEV 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 + +A D+ V+F+T AL+ + K K+ +SKPF+ +L+ V Sbjct: 73 IKHLKADPATQDIPVIFLT-----ALHNPEDIVKGFKLGASDYVSKPFNHEELITRVTH 126 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300072766|gb|ADJ62165.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 55/114 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + L ++L +GY NG A + + F LL+ D+ +P+M G+E Sbjct: 2 RILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRAL 115 >gi|293369371|ref|ZP_06615956.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292635538|gb|EFF54045.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1428 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD+D+R FL + L A +EV +G S ++K L++ D++MP M G Sbjct: 1175 HKILVIEDDNDIRGFLQEEL-SAYFEVEVAADGISGFEKACNYDADLIICDVLMPGMTGF 1233 Query: 63 ELARRATELDPDLKVMFITGFAAVAL-----NPDSN---APKNAKV-LSKPFHLRDLVNE 113 E+ ++ LK F T + L +PD + A V ++KPF + L+ + Sbjct: 1234 EVTKK-------LKTEFATSHIPIILLTALTSPDKHLEGLEAGADVYVTKPFSFKLLLAQ 1286 Query: 114 VNRLL 118 V RL+ Sbjct: 1287 VFRLI 1291 >gi|260175161|ref|ZP_05761573.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315923395|ref|ZP_07919635.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313697270|gb|EFS34105.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1340 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ ED+++M +L K + Y+V+ NG A + +++ SL+++D++MP MDG+ Sbjct: 1091 QSILIVEDNNEMNNYL-KEIFMENYQVIQTYNGKEACEVMQKVYPSLIISDVMMPVMDGL 1149 Query: 63 ELARRATE 70 EL RR + Sbjct: 1150 ELTRRVKQ 1157 >gi|253570043|ref|ZP_04847452.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840424|gb|EES68506.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1431 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD D+R FL + +G +EV +G S ++K L++ D++MP M+G Sbjct: 1170 RKVLIIEDDTDIREFLREEIG-VYFEVEVAADGTSGFEKASTYDADLIVCDVLMPGMNGF 1228 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 E+ R+ L + I ALN + + + ++KPF++ L+ + +L Sbjct: 1229 EVTRK---LKNEFTTSHIPIILLTALNIEEKYQEGIESGADAYITKPFNVSLLLARIFKL 1285 Query: 118 LTIKN 122 + +++ Sbjct: 1286 IELRD 1290 >gi|225182095|ref|ZP_03735524.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225167214|gb|EEG76036.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 226 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD + + AL + G+ V C++ A ++ + FSL++ D+ +P+ +G EL Sbjct: 4 ILLVEDDKTIAMGIEYALTQEGFTVEVCHSAGYARERWGKGGFSLVILDVSLPDGNGFEL 63 Query: 65 ARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R D V+F+T V + D A ++KPF +R+LV+ + +L Sbjct: 64 CREFGG-QSDTPVIFLTACDEEVNVVMGLDMGAD---DYITKPFRVRELVSRIKSVL 116 >gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +ILL ED+ + RFL L G++V C +G + E + L+L D+++P ++ Sbjct: 1 MNGRILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPSLN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ R RA + P +M IT +V + D+ A + KPF + +L+ + Sbjct: 61 GMEVCRRIRAAKSTP---IMMITARDSVFDRVMGLDNGAD---DYIVKPFAIEELLARIR 114 Query: 116 RLL 118 L Sbjct: 115 ALF 117 >gi|215489201|ref|YP_002331632.1| nitrogen regulation protein NR(I) [Escherichia coli O127:H6 str. E2348/69] gi|312969388|ref|ZP_07783590.1| nitrogen regulation protein NR [Escherichia coli 2362-75] gi|215267273|emb|CAS11722.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli O127:H6 str. E2348/69] gi|312285935|gb|EFR13853.1| nitrogen regulation protein NR [Escherichia coli 2362-75] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|209520046|ref|ZP_03268823.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499531|gb|EDZ99609.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 247 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ IL+ +DD +R + + L G++V + NG + +++ E +L++ DI+MPE+D Sbjct: 1 MNQTILIVDDDPVVRDLVSEYLHGRGFQVATLENGLALQRRLQRERPALVVLDIMMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GI R D+ V+ +T A + L D L KPF +LV Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADD-------YLGKPFEPSELVAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 IRTVL 118 >gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ + +F+ LG GYEV+ N+G S R+ L+L D +MP + G+E Sbjct: 7 RILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMPGLTGVE 66 Query: 64 LARRATELDPDLKVMFIT---GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + RR + V+ +T G D+ A + KPF + +L+ V Sbjct: 67 VCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGAD---DYVVKPFSIEELLARVR 118 >gi|191166395|ref|ZP_03028226.1| nitrogen regulation protein NR [Escherichia coli B7A] gi|193063949|ref|ZP_03045035.1| nitrogen regulation protein NR [Escherichia coli E22] gi|194428716|ref|ZP_03061253.1| nitrogen regulation protein NR [Escherichia coli B171] gi|194438334|ref|ZP_03070425.1| nitrogen regulation protein NR [Escherichia coli 101-1] gi|190903495|gb|EDV63213.1| nitrogen regulation protein NR [Escherichia coli B7A] gi|192929414|gb|EDV83022.1| nitrogen regulation protein NR [Escherichia coli E22] gi|194413299|gb|EDX29584.1| nitrogen regulation protein NR [Escherichia coli B171] gi|194422771|gb|EDX38767.1| nitrogen regulation protein NR [Escherichia coli 101-1] gi|320174858|gb|EFW49979.1| Nitrogen regulation protein NR(I) [Shigella dysenteriae CDC 74-1112] gi|320185495|gb|EFW60263.1| Nitrogen regulation protein NR(I) [Shigella flexneri CDC 796-83] Length = 472 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123 >gi|170682005|ref|YP_001746198.1| nitrogen regulation protein NR(I) [Escherichia coli SMS-3-5] gi|187776072|ref|ZP_02800320.2| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. EC4196] gi|188024761|ref|ZP_02773873.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4113] gi|189010238|ref|ZP_02805779.2| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. EC4076] gi|189402181|ref|ZP_02780546.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4401] gi|189403083|ref|ZP_02793163.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4486] gi|189404029|ref|ZP_02786770.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4501] gi|189404865|ref|ZP_02811718.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC869] gi|189405843|ref|ZP_02824575.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC508] gi|193067986|ref|ZP_03048951.1| nitrogen regulation protein NR [Escherichia coli E110019] gi|208806654|ref|ZP_03248991.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4206] gi|208812477|ref|ZP_03253806.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4045] gi|208818418|ref|ZP_03258738.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4042] gi|209399991|ref|YP_002273384.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4115] gi|217325708|ref|ZP_03441792.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. TW14588] gi|291285278|ref|YP_003502096.1| Nitrogen regulation protein NR [Escherichia coli O55:H7 str. CB9615] gi|301027910|ref|ZP_07191201.1| nitrogen regulation protein NR [Escherichia coli MS 196-1] gi|331644598|ref|ZP_08345717.1| nitrogen regulation protein NR(I) [Escherichia coli H736] gi|331675327|ref|ZP_08376077.1| nitrogen regulation protein NR(I) [Escherichia coli TA280] gi|331679976|ref|ZP_08380638.1| nitrogen regulation protein NR(I) [Escherichia coli H591] gi|170519723|gb|ACB17901.1| nitrogen regulation protein NR(I) [Escherichia coli SMS-3-5] gi|187769198|gb|EDU33042.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. EC4196] gi|188016748|gb|EDU54870.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4113] gi|189001516|gb|EDU70502.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. EC4076] gi|189357214|gb|EDU75633.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4401] gi|189362644|gb|EDU81063.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4486] gi|189367911|gb|EDU86327.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4501] gi|189373254|gb|EDU91670.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC869] gi|189378090|gb|EDU96506.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC508] gi|192958606|gb|EDV89044.1| nitrogen regulation protein NR [Escherichia coli E110019] gi|208726455|gb|EDZ76056.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4206] gi|208733754|gb|EDZ82441.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4045] gi|208738541|gb|EDZ86223.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4042] gi|209161391|gb|ACI38824.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. EC4115] gi|217321929|gb|EEC30353.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str. TW14588] gi|290765151|gb|ADD59112.1| Nitrogen regulation protein NR [Escherichia coli O55:H7 str. CB9615] gi|299878992|gb|EFI87203.1| nitrogen regulation protein NR [Escherichia coli MS 196-1] gi|320191041|gb|EFW65691.1| Nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. EC1212] gi|320639206|gb|EFX08833.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. G5101] gi|320649918|gb|EFX18426.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H- str. H 2687] gi|320655225|gb|EFX23171.1| nitrogen regulation protein NR(I) [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666011|gb|EFX33030.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. LSU-61] gi|326338128|gb|EGD61958.1| Nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. 1044] gi|326342577|gb|EGD66350.1| Nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. 1125] gi|331036060|gb|EGI08296.1| nitrogen regulation protein NR(I) [Escherichia coli H736] gi|331067387|gb|EGI38792.1| nitrogen regulation protein NR(I) [Escherichia coli TA280] gi|331072302|gb|EGI43635.1| nitrogen regulation protein NR(I) [Escherichia coli H591] Length = 472 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123 >gi|167756093|ref|ZP_02428220.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402] gi|167704085|gb|EDS18664.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402] Length = 227 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++I + EDD+++R + AL GYEVV +N A ++ ++ SL + D+++P+M Sbjct: 1 MGERIFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPKMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+ + E D +L ++ ++ + + ++KPF + +L V LL Sbjct: 61 GIDAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLL 118 >gi|160887016|ref|ZP_02068019.1| hypothetical protein BACOVA_05030 [Bacteroides ovatus ATCC 8483] gi|156107427|gb|EDO09172.1| hypothetical protein BACOVA_05030 [Bacteroides ovatus ATCC 8483] Length = 1428 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD+D+R FL + L A +EV +G S ++K L++ D++MP M G Sbjct: 1175 HKILVIEDDNDIRGFLQEEL-SAYFEVEVAADGISGFEKACNYDADLIICDVLMPGMTGF 1233 Query: 63 ELARRATELDPDLKVMFITGFAAVAL-----NPDSN---APKNAKV-LSKPFHLRDLVNE 113 E+ ++ LK F T + L +PD + A V ++KPF + L+ + Sbjct: 1234 EVTKK-------LKTEFATSHIPIILLTALTSPDKHLEGLEAGADVYVTKPFSFKLLLAQ 1286 Query: 114 VNRLL 118 V RL+ Sbjct: 1287 VFRLI 1291 >gi|73749306|ref|YP_308545.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73661022|emb|CAI83629.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 852 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ + + + + LG+ ++V S ++ A K+ F L+L DI MP M G+E Sbjct: 732 ILVIDDEEHICQLVTRVLGQMRHKVESFSDPIKALSKLETTSFDLVLLDIRMPGMSGLEF 791 Query: 65 ARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P+L KV+F+TG V+ + +SKPFH L +N+ L Sbjct: 792 YSQMISKRPELAGKVIFMTGDMTVSDLEAQMQQTDLMHISKPFHPAILEQFLNKAL 847 >gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 273 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ ED+ + L L K G+EV ++G A ++ EEP L+L D+++P D Sbjct: 39 MAAKILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTD 98 Query: 61 GIELARRATE 70 GIE+ R+ E Sbjct: 99 GIEICRKVRE 108 >gi|289662932|ref|ZP_06484513.1| two-component system response regulator PilR [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 464 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ LG+ G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TDIARRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 124 >gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 231 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ M+R L L K G+E ++ ++G A + L + D++MP MDG + Sbjct: 4 ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGFDF 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ E L V+F+T + + LSKPF +L+ + +L Sbjct: 64 VKKLRETST-LPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVL 116 >gi|300023279|ref|YP_003755890.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525100|gb|ADJ23569.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 614 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 3/115 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D + R+ L +AG++V++ +G A +V ++ F ++L D+ MP MDG+ Sbjct: 482 KVLVVDDVEPNRKLASAVLRRAGHDVITAASGPEAIARVEDDSFDVVLMDVQMPGMDGLA 541 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVN 115 R L P + + G A A D A A ++KPF +L+ V Sbjct: 542 ATRAIGRLTPKHTLPPVIGMTANAFPSDVENCMAAGMAAHVAKPFDFGELLRMVT 596 >gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 226 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 12/120 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LLAEDD + L +ALG+ GY VV G A D L++ D+ +P+MDG+E Sbjct: 3 HVLLAEDDPAISEPLARALGREGYNVVVQGTGQGAIDHA--GAADLVVLDLGLPDMDGLE 60 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR + V+ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 61 VARAIRQKGLTTPVLVLTARADEVDLVVGLDAGAD-----DYVTKPFRLAELLARVRALL 115 >gi|281421661|ref|ZP_06252660.1| DNA-binding response regulator PrrA [Prevotella copri DSM 18205] gi|281404295|gb|EFB34975.1| DNA-binding response regulator PrrA [Prevotella copri DSM 18205] Length = 235 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 N K+LL EDD+++ ++ K+ + GYEV + NG ++ ++++DI MP Sbjct: 3 NTKLLLVEDDENLA-YMEKSCFEDIIGGYEVKTAVNGKEGLKVWQDFQPDVIVSDIDMPI 61 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDGIE+ ++ E+D ++F TG + A + KPF +L ++ LL Sbjct: 62 MDGIEMVKKIREVDGKTIILFTTGLTSPKDLKAGYAAGANNYVKKPFIPEELDAHIHSLL 121 Query: 119 TIK 121 +K Sbjct: 122 QLK 124 >gi|254439882|ref|ZP_05053376.1| Sigma-54 interaction domain family [Octadecabacter antarcticus 307] gi|198255328|gb|EDY79642.1| Sigma-54 interaction domain family [Octadecabacter antarcticus 307] Length = 452 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +A +AG +V + ++ + V E L+++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQAFTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E + P L V+ I+ + + L KPF L DL+ R L + Sbjct: 61 GLEQLPKIALARPGLPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRAARALEV 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|254424005|ref|ZP_05037723.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Synechococcus sp. PCC 7335] gi|196191494|gb|EDX86458.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Synechococcus sp. PCC 7335] Length = 617 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D L K L AGYEV+ +NG A + +L+L DI+MP+MDG E Sbjct: 22 RILIVDDTPTNLFVLSKLLTSAGYEVIQSSNGLEALMLAQSHQPALILLDIMMPDMDGHE 81 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R R + V+F++ A + A ++KPF +++ V + ++ Sbjct: 82 VCRRLRTVSATAHIPVIFLSALDAPLNKIQAFRSGAADYVTKPFQTEEVIARVQLQIELR 141 >gi|162455248|ref|YP_001617615.1| response regulator [Sorangium cellulosum 'So ce 56'] gi|161165830|emb|CAN97135.1| response regulator [Sorangium cellulosum 'So ce 56'] Length = 460 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59 M ++ L+ +DD+ M +L L G E + + A A + +E F ++LTD+ M M Sbjct: 1 MGRRALIIDDDEAMCAWLSADLRSRGVEATTRTSPAEALALLEADEGFDVILTDLNMRGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAV 86 DGI + RA E+ PD+ VM IT F ++ Sbjct: 61 DGIAVCGRAAEIRPDVPVMVITAFGSI 87 >gi|159037489|ref|YP_001536742.1| response regulator receiver modulated diguanylate cyclase [Salinispora arenicola CNS-205] gi|157916324|gb|ABV97751.1| response regulator receiver modulated diguanylate cyclase [Salinispora arenicola CNS-205] Length = 326 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD+D+ RF+ L GYEV+ +G A + + + L + D++MP +DG+EL Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGYEVIHARDGQEALEVIAQHRPDLAVVDLMMPRVDGLEL 70 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA + L V+ +T + L KPF +LV V+ L Sbjct: 71 TRRLRADPMTAALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTL 126 >gi|110642559|ref|YP_670289.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli 536] gi|191173763|ref|ZP_03035285.1| sensor histidine kinase/response regulator EvgS [Escherichia coli F11] gi|300997592|ref|ZP_07181801.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|110344151|gb|ABG70388.1| sensor protein EvgS precursor [Escherichia coli 536] gi|190905911|gb|EDV65528.1| sensor histidine kinase/response regulator EvgS [Escherichia coli F11] gi|300304163|gb|EFJ58683.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|324011070|gb|EGB80289.1| response regulator receiver domain protein [Escherichia coli MS 60-1] Length = 1197 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 44/80 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 AR+ E + L + +T A Sbjct: 1021 ARKLREQNSSLPIWGLTANA 1040 >gi|51245343|ref|YP_065227.1| Ntr family protein two-component system response regulator [Desulfotalea psychrophila LSv54] gi|50876380|emb|CAG36220.1| related to two-component system response regulator (Ntr family) [Desulfotalea psychrophila LSv54] Length = 146 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 56/115 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++LL +D+ D L L G V + G A + +E F +++ D+ MP MD Sbjct: 5 IKARVLLVDDEKDFIETLSNRLQIRGLTVSTSTCGQDALKLIEKEKFDVVVLDLTMPGMD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E ++ E PD +++ ++G + + ++ L KP L L+ +++ Sbjct: 65 GLETLKKLKETAPDTEIIMLSGHGTIQASTEAIKLGAEDFLEKPLDLPKLLEKIS 119 >gi|27367550|ref|NP_763077.1| Chemotaxis regulator [Vibrio vulnificus CMCP6] gi|37677352|ref|NP_937748.1| chemotaxis protein CheY [Vibrio vulnificus YJ016] gi|320159405|ref|YP_004191783.1| chemotaxis regulator [Vibrio vulnificus MO6-24/O] gi|27359122|gb|AAO08067.1| Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio vulnificus CMCP6] gi|37201898|dbj|BAC97718.1| chemotaxis protein CheY [Vibrio vulnificus YJ016] gi|319934717|gb|ADV89580.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio vulnificus MO6-24/O] Length = 119 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D +R+ + L AGY+V + N+G+ A K + F ++++D+ MP M G E Sbjct: 3 KILAVDDSVSIRQMVSHTLKDAGYDVETANDGSDALQKSKTTKFDVVISDVNMPNMGGFE 62 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R RA + ++ +T + + + L KPF+ L+ + R+L Sbjct: 63 LVRAMRAIPQYKFIPILMLTTETSPEKKMEGKSAGATGWLVKPFNPDTLLKTLKRVL 119 >gi|27382769|ref|NP_774298.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355942|dbj|BAC52923.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 125 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 5/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPE-MD 60 ++L+ ED+ + F+ AL G+E S ++G +A R+ E LLTD+ + + + Sbjct: 6 RVLVVEDEALICSFIEDALSDGGFEACSVHSGEAAMSTFRDGREQCRALLTDVNLGDGIS 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ELAR+ E+ P V+++T +A A + S + ++ KPF L V++LL Sbjct: 66 GWELARQIREITPGFPVVYMT--SASAPDWKSQGVDGSLLIEKPFAPAQLAAAVSQLLDT 123 Query: 121 K 121 + Sbjct: 124 R 124 >gi|23016075|ref|ZP_00055835.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 123 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ ED+ + L +AL AGY V ++G D ++L DI +P+ Sbjct: 1 MTGTVVVVEDNAMNMKLLEQALTIAGYTTVKSSDGDGLVDLTAGSGAGVILMDIQLPKYS 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNA----PKNAKVLSKPFHLRDLVNEV 114 GI+L + RA + D+ V+ +T FA +PDS A +V++KP +R L++EV Sbjct: 61 GIDLLKQLRADDRTKDVPVVAVTAFA----DPDSVAGFLEEGFNQVITKPISIRKLLDEV 116 Query: 115 NR 116 R Sbjct: 117 AR 118 >gi|322378621|ref|ZP_08053057.1| putative transcriptional regulator [Helicobacter suis HS1] gi|321148928|gb|EFX43392.1| putative transcriptional regulator [Helicobacter suis HS1] Length = 215 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+ L EDD + R L + L AG+ VVS + A D + ++ F LLL D+ +PE + Sbjct: 4 KKLFLLEDDVLLHRMLEEFLKHAGFVVVSAYDKTPAMDILSQQHFDLLLLDVQVPEGNSF 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + +L+ +FI+ + + + + L KPF L +L + RLLT Sbjct: 64 QILQILRDLNIATPAIFISVCSDMQTLRQAFHAGASDYLKKPFDLEELYLRMERLLT 120 >gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp. oral taxon 078 str. F0262] gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp. oral taxon 078 str. F0262] Length = 230 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++ L L G++V++ NGA +++P L++ DI+MPEMDG E Sbjct: 3 KILIIDDEKELVTLLQDELEARGHQVLAAYNGADGVSLAKKQP-ELIVLDIMMPEMDGFE 61 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + R+ + L P ++F++ A + + +SKPF LR+L+ ++ Sbjct: 62 VCRKIRDELLCP---ILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARID 112 >gi|281178110|dbj|BAI54440.1| two-component sensor kinase [Escherichia coli SE15] Length = 900 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF++ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNSSGAQVVAVGNAAQALETLQNSEPFAVALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1142 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 9/118 (7%) Query: 1 MNQKILLAEDDDDMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP 57 + +K+LLA DDDMR L L AG+ + NG A +K+ + P L+L D++MP Sbjct: 1019 LGKKLLLA--DDDMRNIFALSAVLEDAGFSIEIATNGKEAINKLEDYPEIELILMDVMMP 1076 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 EMDGIE RR ++ P + I A A+ D A +SKP + L++ Sbjct: 1077 EMDGIEATRRIRQV-PRWANIPIIAVTAKAMQGDREQCLEAGANDYISKPVDVDKLLS 1133 >gi|262197622|ref|YP_003268831.1| response regulator receiver modulated metal dependent phosphohydrolase [Haliangium ochraceum DSM 14365] gi|262080969|gb|ACY16938.1| response regulator receiver modulated metal dependent phosphohydrolase [Haliangium ochraceum DSM 14365] Length = 526 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R L + L GY V S + G A ++R P+ ++++D+ MP + G+E Sbjct: 20 RILVVDDEQVIRDILSEFLSMEGYVVRSVDCGERALTELRLRPYDMVISDLKMPGISGLE 79 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + D+ + +TGF V + + KPF + ++++ V R L Sbjct: 80 LLENIGTENIDVLTVIMTGFGTVETAITAMKKGAYDYILKPFKVEEVMHVVRRGL 134 >gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] Length = 230 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 10/121 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L GY+V + +NG K +++ L++ D++MPEMDGIE Sbjct: 7 KILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKKKQPHLIILDVMMPEMDGIE 66 Query: 64 LAR--RATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RAT + V F+T ++ VA D+ A ++KP + LV++V L Sbjct: 67 ACEKIRATPGLENTIVAFLTARGEDYSQVA-GFDAGAD---DYITKPIKPKVLVSKVKAL 122 Query: 118 L 118 L Sbjct: 123 L 123 >gi|167844478|ref|ZP_02469986.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei B7210] Length = 240 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 5 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 65 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 118 >gi|160915022|ref|ZP_02077235.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991] gi|158432821|gb|EDP11110.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991] Length = 232 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++++R+ + L KA YE+V +G A + F +L+ D ++P + GIE Sbjct: 10 KILLIEDEENIRKIIAYDLKKANYEIVETGDGREAIELAGSNDFDVLIIDWMLPHVSGIE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + R E D ++ +T + ++KPF R+L+ VN Sbjct: 70 IVERLRERKNDSIMIMLTARDDETDILHAFEKGVDDYITKPFSPRELLARVN 121 >gi|149919895|ref|ZP_01908371.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149819342|gb|EDM78775.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 242 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++L+ +D+ +R F+ ++L AGY+ + A+A + + E +L++TD+ M Sbjct: 120 GTRVLVVDDEPAVRSFMGQSLRLAGYDAWEFDGPAAAVEALDRGGEDVALVVTDVQMRGS 179 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ARR P L V+F++GFA L+ + A + L+KPF L++ V L+ Sbjct: 180 SGPTFARRLRLTHPSLPVLFVSGFAPEELDLEGGARR--AFLAKPFGRATLLDAVATLI 236 >gi|120613015|ref|YP_972693.1| response regulator receiver protein [Acidovorax citrulli AAC00-1] gi|326319055|ref|YP_004236727.1| response regulator receiver protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|120591479|gb|ABM34919.1| response regulator receiver protein [Acidovorax citrulli AAC00-1] gi|323375891|gb|ADX48160.1| response regulator receiver protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 120 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL +D MR+ + L AGY VV +G A +K L+L D MP +DGI Sbjct: 2 QSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKAETHDIQLVLADQNMPRLDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 L R+ E P K + I + + A +NA L KPF L+ + +++ Sbjct: 62 GLTRKLRE-HPRFKTIPILILTTESSDQMKQAGRNAGATGWLVKPFDPNRLIEVIQKVI 119 >gi|145224579|ref|YP_001135257.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315444910|ref|YP_004077789.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145217065|gb|ABP46469.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315263213|gb|ADT99954.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 220 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED+ + + K L G+ V +G SAY F L++ D +P MDG+ + Sbjct: 4 VLIAEDEPRISALVRKGLSANGFSVTVVPDGPSAYAYAHSGAFDLMVLDTGLPGMDGLSV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLT 119 RR L V+ +T A D+ A V++KPF L DLV+ V L+ Sbjct: 64 LRRLRAEGSALPVIVLTTRTTGA---DTAALLGGADDVIAKPFRLEDLVSRVRTRLS 117 >gi|115525631|ref|YP_782542.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] gi|115519578|gb|ABJ07562.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] Length = 130 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 4/116 (3%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD + R +A L +AGYEV NG A ++V E+ F L++ D+ MP MDG+ Sbjct: 11 ILAVDDSSLVRLYYRATLQQAGYEVEQAINGIEAMERVLEQAFDLVIVDVNMPRMDGLSF 70 Query: 65 --ARRA-TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A RA +E L + I+ A D+ A L KP DL+ V L Sbjct: 71 LGALRARSENVASLPALVISTEAGAQDRDDARAAGANFYLVKPVSEADLLRHVAAL 126 >gi|329851251|ref|ZP_08266008.1| response regulator [Asticcacaulis biprosthecum C19] gi|328840097|gb|EGF89669.1| response regulator [Asticcacaulis biprosthecum C19] Length = 129 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 4/113 (3%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 EDDDD++ L L + GY+V ++G +A + + L+L D+ MP+MDG+ +R Sbjct: 2 EDDDDIQSLLKHILKRDGYDVTCADSGMTALGAMAQSIPDLILLDMAMPDMDGLSFLKRR 61 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 + P+ +V+ + A N D A ++KPF L+ + RL+ Sbjct: 62 AQF-PEFRVIPVICVTARDRNTDVMAAIEMGADHYVTKPFDNAKLLASIARLM 113 >gi|300727408|ref|ZP_07060817.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299775288|gb|EFI71887.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1268 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++D+R FL + L + YEV+S NG + +E ++TD++MP MDG+ Sbjct: 1013 KLLIVEDNNDLRSFLTEIL-RVNYEVISAENGKIGLQRAVDELPDFIITDVMMPVMDGLS 1071 Query: 64 LARR 67 + + Sbjct: 1072 MVHQ 1075 >gi|284052602|ref|ZP_06382812.1| response regulator receiver modulated serine phosphatase [Arthrospira platensis str. Paraca] Length = 374 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +DD +R L + L K GY+VV +NG +K +E +L++ D +MP + GIE+ Sbjct: 1 LVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTGIEVC 60 Query: 66 RRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R+ + P+L + +T AV LSKP + +L V Sbjct: 61 RQVKAM-PELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARV 111 >gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ ++R L L AGYEV +G A E+PF L++ DI++P+ DG Sbjct: 2 KKILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIMLPKKDGW 61 Query: 63 ELARRATELDPDLKVMFITG 82 + R E + V+ IT Sbjct: 62 SICREIKEY-SSVPVIIITA 80 >gi|256819028|ref|YP_003140307.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Capnocytophaga ochracea DSM 7271] gi|256580611|gb|ACU91746.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Capnocytophaga ochracea DSM 7271] Length = 387 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K L YEV +G +K+++E + L+L DI MP+MDG Sbjct: 3 KILIIEDESAIRRVLTKILVEESKEYEVEEAADGVEGVEKLKKEDYDLVLCDIKMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ +L P++ + I+G + ++ +SKP L L+N V L Sbjct: 63 MEVLAEVKKLKPEIPFVMISGHGDLETAVNAMRLGAYDYISKPPDLNRLLNTVRNAL 119 >gi|224826635|ref|ZP_03699736.1| two component, sigma54 specific, transcriptional regulator, Fis family [Lutiella nitroferrum 2002] gi|224601236|gb|EEG07418.1| two component, sigma54 specific, transcriptional regulator, Fis family [Lutiella nitroferrum 2002] Length = 450 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 52/114 (45%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD D+R ++ L +GY + +G A + +EP L+++D M MDG L Sbjct: 6 ILVVEDDADLREAIVDTLSLSGYPTLEAGDGHEALAVLAKEPVGLIVSDAQMQPMDGYAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P + + +T + + + L KPF L+ EV + L Sbjct: 66 FDEVKKRHPGVPFILMTAYGVIERAIELLRAGATHYLLKPFEPASLIREVEKHL 119 >gi|218707493|ref|YP_002415012.1| nitrogen regulation protein NR(I) [Escherichia coli UMN026] gi|293407487|ref|ZP_06651406.1| glnG [Escherichia coli FVEC1412] gi|298383230|ref|ZP_06992823.1| glnG [Escherichia coli FVEC1302] gi|300896910|ref|ZP_07115396.1| nitrogen regulation protein NR [Escherichia coli MS 198-1] gi|218434590|emb|CAR15519.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator ; sigma54 interaction protein [Escherichia coli UMN026] gi|284923969|emb|CBG37068.1| nitrogen regulation protein NR(I) (two-component system response regulator) [Escherichia coli 042] gi|291425404|gb|EFE98443.1| glnG [Escherichia coli FVEC1412] gi|298276264|gb|EFI17784.1| glnG [Escherichia coli FVEC1302] gi|300359263|gb|EFJ75133.1| nitrogen regulation protein NR [Escherichia coli MS 198-1] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|170690552|ref|ZP_02881719.1| response regulator receiver protein [Burkholderia graminis C4D1M] gi|170144987|gb|EDT13148.1| response regulator receiver protein [Burkholderia graminis C4D1M] Length = 473 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ + L + L YEV+S N+GA A + ++++D+ MP MDG E Sbjct: 41 LLLVDDEPGVISSLKRLLRPLKYEVLSANSGAEALTLLESARVDVIISDMRMPNMDGAEF 100 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ + PD + +TG++ V A+ N L KP+ +DL+ + R L Sbjct: 101 LSRSRSMAPDAIRILLTGYSEVDAVVRAVNEGHVYHYLHKPWDDQDLLLTIQRAL 155 >gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] Length = 237 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|146283794|ref|YP_001173947.1| hypothetical protein PST_3477 [Pseudomonas stutzeri A1501] gi|145571999|gb|ABP81105.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 762 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMP-EM 59 ++L+ +DD ++R ++ L + GY+V + A ++ R+ +LL+D+VMP + Sbjct: 638 RVLVVDDDAEVREAMVAMLDELGYQVDEAPSADDALARLADRRQPAIDILLSDVVMPGRL 697 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ LA L P + ++ +G+ +A P +VL+KPF + L ++ +L Sbjct: 698 DGVGLAEEVQRLYPTIPIILASGYTTRIATEP------AVRVLAKPFSHQALAETLSEIL 751 >gi|56461535|ref|YP_156816.1| nitrogen regulation protein [Idiomarina loihiensis L2TR] gi|56180545|gb|AAV83267.1| Nitrogen regulation protein NRI (CHEY,AAA domains) [Idiomarina loihiensis L2TR] Length = 468 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++ + +DDD +R L KA + Y V S NG + ++ + +++LTDI MP +G Sbjct: 4 NAQLWIIDDDDSIRWVLEKAFADSRYHVRSFANGEDFFMALKSDKPTVVLTDIRMPGENG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + R + + L V+ +T + + + + L+KPF + + + V+R L Sbjct: 64 LAVLERLHQTEAHLPVVVMTAHSDLETTVKAFQGGAFEYLAKPFDIDEAITAVDRAL 120 >gi|26111063|gb|AAN83246.1|AE016770_46 Nitrogen regulation protein NR(I) [Escherichia coli CFT073] Length = 489 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 26 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 85 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 86 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 140 >gi|39933435|ref|NP_945711.1| two-component transcriptional regulator ChvI [Rhodopseudomonas palustris CGA009] gi|192288792|ref|YP_001989397.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|316931661|ref|YP_004106643.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|39647281|emb|CAE25802.1| two-component transcriptional regulator ChvI, winged helix family [Rhodopseudomonas palustris CGA009] gi|192282541|gb|ACE98921.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|315599375|gb|ADU41910.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 233 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY +++ +GASA D R P L + DI MP MDG+E Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTTPPDLAILDIKMPRMDGMET 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIRKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|74314373|ref|YP_312792.1| nitrogen regulation protein NR(I) [Shigella sonnei Ss046] gi|82546212|ref|YP_410159.1| nitrogen regulation protein NR(I) [Shigella boydii Sb227] gi|157155281|ref|YP_001465351.1| nitrogen regulation protein NR(I) [Escherichia coli E24377A] gi|170022118|ref|YP_001727072.1| nitrogen regulation protein NR(I) [Escherichia coli ATCC 8739] gi|209921342|ref|YP_002295426.1| nitrogen regulation protein NR(I) [Escherichia coli SE11] gi|218697581|ref|YP_002405248.1| nitrogen regulation protein NR(I) [Escherichia coli 55989] gi|260846364|ref|YP_003224142.1| fused DNA-binding response regulator GlnG in two-component regulatory system with GlnL: response regulator/sigma 54 interaction protein [Escherichia coli O103:H2 str. 12009] gi|300906185|ref|ZP_07123897.1| nitrogen regulation protein NR [Escherichia coli MS 84-1] gi|300919051|ref|ZP_07135595.1| nitrogen regulation protein NR [Escherichia coli MS 115-1] gi|300925943|ref|ZP_07141777.1| nitrogen regulation protein NR [Escherichia coli MS 182-1] gi|301303336|ref|ZP_07209460.1| nitrogen regulation protein NR [Escherichia coli MS 124-1] gi|301328184|ref|ZP_07221312.1| nitrogen regulation protein NR [Escherichia coli MS 78-1] gi|309797824|ref|ZP_07692207.1| nitrogen regulation protein NR [Escherichia coli MS 145-7] gi|73857850|gb|AAZ90557.1| response regulator for gln [Shigella sonnei Ss046] gi|81247623|gb|ABB68331.1| response regulator for gln [Shigella boydii Sb227] gi|157077311|gb|ABV17019.1| nitrogen regulation protein NR(I) [Escherichia coli E24377A] gi|169757046|gb|ACA79745.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Escherichia coli ATCC 8739] gi|209914601|dbj|BAG79675.1| two-component regulator protein [Escherichia coli SE11] gi|218354313|emb|CAV01025.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator ; sigma54 interaction protein [Escherichia coli 55989] gi|257761511|dbj|BAI33008.1| fused DNA-binding response regulator GlnG in two-component regulatory system with GlnL: response regulator/sigma 54 interaction protein [Escherichia coli O103:H2 str. 12009] gi|300401987|gb|EFJ85525.1| nitrogen regulation protein NR [Escherichia coli MS 84-1] gi|300413831|gb|EFJ97141.1| nitrogen regulation protein NR [Escherichia coli MS 115-1] gi|300417998|gb|EFK01309.1| nitrogen regulation protein NR [Escherichia coli MS 182-1] gi|300841290|gb|EFK69050.1| nitrogen regulation protein NR [Escherichia coli MS 124-1] gi|300845321|gb|EFK73081.1| nitrogen regulation protein NR [Escherichia coli MS 78-1] gi|308118580|gb|EFO55842.1| nitrogen regulation protein NR [Escherichia coli MS 145-7] gi|315254232|gb|EFU34200.1| nitrogen regulation protein NR [Escherichia coli MS 85-1] gi|323182386|gb|EFZ67793.1| nitrogen regulation protein NR [Escherichia coli 1357] gi|323959365|gb|EGB55026.1| nitrogen regulation protein NR(I) [Escherichia coli H489] gi|323969734|gb|EGB65017.1| nitrogen regulation protein NR(I) [Escherichia coli TA007] gi|324019790|gb|EGB89009.1| nitrogen regulation protein NR [Escherichia coli MS 117-3] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|15834044|ref|NP_312817.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. Sakai] gi|16131708|ref|NP_418304.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli str. K-12 substr. MG1655] gi|82778958|ref|YP_405307.1| nitrogen regulation protein NR(I) [Shigella dysenteriae Sd197] gi|89110160|ref|AP_003940.1| fused DNA-binding response regulator in two-component regulatory system with GlnL, nitrogen regulator I (NRI) [Escherichia coli str. K-12 substr. W3110] gi|170083340|ref|YP_001732660.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein [Escherichia coli str. K-12 substr. DH10B] gi|195937506|ref|ZP_03082888.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. EC4024] gi|238902935|ref|YP_002928731.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli BW2952] gi|254795861|ref|YP_003080698.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. TW14359] gi|256021506|ref|ZP_05435371.1| nitrogen regulation protein NR(I) [Shigella sp. D9] gi|256026098|ref|ZP_05439963.1| nitrogen regulation protein NR(I) [Escherichia sp. 4_1_40B] gi|260857734|ref|YP_003231625.1| fused DNA-binding response regulator GlnG in two-component regulatory system with GlnL: response regulator/sigma 54 interaction protein [Escherichia coli O26:H11 str. 11368] gi|261223495|ref|ZP_05937776.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. FRIK2000] gi|261257258|ref|ZP_05949791.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str. FRIK966] gi|293413302|ref|ZP_06655963.1| nitrogen regulation protein NR(I) [Escherichia coli B354] gi|293417328|ref|ZP_06659952.1| nitrogen regulation protein NR(I) [Escherichia coli B185] gi|293470180|ref|ZP_06664591.1| nitrogen regulation protein NR(I) [Escherichia coli B088] gi|300819247|ref|ZP_07099447.1| nitrogen regulation protein NR [Escherichia coli MS 107-1] gi|300823689|ref|ZP_07103815.1| nitrogen regulation protein NR [Escherichia coli MS 119-7] gi|300937093|ref|ZP_07151955.1| nitrogen regulation protein NR [Escherichia coli MS 21-1] gi|300948167|ref|ZP_07162297.1| nitrogen regulation protein NR [Escherichia coli MS 116-1] gi|300957295|ref|ZP_07169522.1| nitrogen regulation protein NR [Escherichia coli MS 175-1] gi|301023831|ref|ZP_07187565.1| nitrogen regulation protein NR [Escherichia coli MS 69-1] gi|301648444|ref|ZP_07248175.1| nitrogen regulation protein NR [Escherichia coli MS 146-1] gi|307140563|ref|ZP_07499919.1| nitrogen regulation protein NR(I) [Escherichia coli H736] gi|307314011|ref|ZP_07593625.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli W] gi|309783776|ref|ZP_07678422.1| nitrogen regulation protein NR [Shigella dysenteriae 1617] gi|331670711|ref|ZP_08371547.1| nitrogen regulation protein NR(I) [Escherichia coli TA271] gi|331685605|ref|ZP_08386188.1| nitrogen regulation protein NR(I) [Escherichia coli H299] gi|84028723|sp|P0AFB9|NTRC_ECO57 RecName: Full=Nitrogen regulation protein NR(I) gi|84028724|sp|P0AFB8|NTRC_ECOLI RecName: Full=Nitrogen regulation protein NR(I) gi|304973|gb|AAB03002.1| CG Site No. 702 [Escherichia coli str. K-12 substr. MG1655] gi|1790299|gb|AAC76865.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli str. K-12 substr. MG1655] gi|13364266|dbj|BAB38213.1| response regulator for gln GlnG [Escherichia coli O157:H7 str. Sakai] gi|81243106|gb|ABB63816.1| response regulator for gln [Shigella dysenteriae Sd197] gi|85676191|dbj|BAE77441.1| fused DNA-binding response regulator in two-component regulatory system with GlnL, nitrogen regulator I (NRI) [Escherichia coli str. K12 substr. W3110] gi|169891175|gb|ACB04882.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein [Escherichia coli str. K-12 substr. DH10B] gi|209752798|gb|ACI74706.1| histidine protein kinase sensor GlnL [Escherichia coli] gi|209752800|gb|ACI74707.1| histidine protein kinase sensor GlnL [Escherichia coli] gi|209752802|gb|ACI74708.1| histidine protein kinase sensor GlnL [Escherichia coli] gi|209752804|gb|ACI74709.1| histidine protein kinase sensor GlnL [Escherichia coli] gi|209752806|gb|ACI74710.1| histidine protein kinase sensor GlnL [Escherichia coli] gi|238861184|gb|ACR63182.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli BW2952] gi|254595261|gb|ACT74622.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator, sigma54 interaction protein [Escherichia coli O157:H7 str. TW14359] gi|257756383|dbj|BAI27885.1| fused DNA-binding response regulator GlnG in two-component regulatory system with GlnL: response regulator/sigma 54 interaction protein [Escherichia coli O26:H11 str. 11368] gi|260451296|gb|ACX41718.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Escherichia coli DH1] gi|291321390|gb|EFE60829.1| nitrogen regulation protein NR(I) [Escherichia coli B088] gi|291430848|gb|EFF03844.1| nitrogen regulation protein NR(I) [Escherichia coli B185] gi|291468050|gb|EFF10548.1| nitrogen regulation protein NR(I) [Escherichia coli B354] gi|300315952|gb|EFJ65736.1| nitrogen regulation protein NR [Escherichia coli MS 175-1] gi|300396879|gb|EFJ80417.1| nitrogen regulation protein NR [Escherichia coli MS 69-1] gi|300452294|gb|EFK15914.1| nitrogen regulation protein NR [Escherichia coli MS 116-1] gi|300457825|gb|EFK21318.1| nitrogen regulation protein NR [Escherichia coli MS 21-1] gi|300523751|gb|EFK44820.1| nitrogen regulation protein NR [Escherichia coli MS 119-7] gi|300528133|gb|EFK49195.1| nitrogen regulation protein NR [Escherichia coli MS 107-1] gi|301073487|gb|EFK88293.1| nitrogen regulation protein NR [Escherichia coli MS 146-1] gi|306906328|gb|EFN36844.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli W] gi|308928359|gb|EFP73820.1| nitrogen regulation protein NR [Shigella dysenteriae 1617] gi|309704293|emb|CBJ03642.1| nitrogen regulation protein NR(I) (two-component system response regulator) [Escherichia coli ETEC H10407] gi|315063154|gb|ADT77481.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli W] gi|315138436|dbj|BAJ45595.1| nitrogen regulation protein NR [Escherichia coli DH1] gi|320182140|gb|EFW57043.1| Nitrogen regulation protein NR(I) [Shigella boydii ATCC 9905] gi|320644594|gb|EFX13648.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H- str. 493-89] gi|320660852|gb|EFX28298.1| nitrogen regulation protein NR(I) [Escherichia coli O55:H7 str. USDA 5905] gi|323155094|gb|EFZ41282.1| nitrogen regulation protein NR [Escherichia coli EPECa14] gi|323174266|gb|EFZ59893.1| nitrogen regulation protein NR [Escherichia coli LT-68] gi|323380782|gb|ADX53050.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Escherichia coli KO11] gi|323934355|gb|EGB30768.1| nitrogen regulation protein NR(I) [Escherichia coli E1520] gi|323943763|gb|EGB39860.1| nitrogen regulation protein NR(I) [Escherichia coli H120] gi|324115638|gb|EGC09576.1| nitrogen regulation protein NR(I) [Escherichia coli E1167] gi|331061966|gb|EGI33889.1| nitrogen regulation protein NR(I) [Escherichia coli TA271] gi|331077076|gb|EGI48291.1| nitrogen regulation protein NR(I) [Escherichia coli H299] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|332084074|gb|EGI89279.1| nitrogen regulation protein NR [Shigella boydii 5216-82] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|323136078|ref|ZP_08071161.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322399169|gb|EFY01688.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 232 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 15/125 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +GA A D +R P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEGEGYRVQTYTDGAQALDGLRANPPDLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FIHKPFSQRLLVERVKAI 115 Query: 118 LTIKN 122 L N Sbjct: 116 LRRAN 120 >gi|298383853|ref|ZP_06993414.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298263457|gb|EFI06320.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1431 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD D+R FL + +G +EV +G S ++K L++ D++MP M+G Sbjct: 1170 RKVLIIEDDTDIREFLREEIG-VYFEVEVAADGTSGFEKASTYDADLIVCDVLMPGMNGF 1228 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 E+ R+ L + I ALN + + + ++KPF++ L+ + +L Sbjct: 1229 EVTRK---LKNEFTTSHIPIILLTALNIEEKYQEGIESGADAYITKPFNVSLLLARIFKL 1285 Query: 118 LTIKN 122 + +++ Sbjct: 1286 IELRD 1290 >gi|298291496|ref|YP_003693435.1| response regulator receiver protein [Starkeya novella DSM 506] gi|296928007|gb|ADH88816.1| response regulator receiver protein [Starkeya novella DSM 506] Length = 123 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +L+ ED++ + L GY V +G A D R L+L DI +PE+ Sbjct: 1 MSKTVLIVEDNELNMKLFNDLLEAHGYSTVGTRSGVEAMDLARRHRPDLILMDIQLPEVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+++ RA + DP+LK + + A A+ D + LSKP + + V + Sbjct: 61 GLDVT-RALKADPELKAIPVIAVTAFAMKGDEERIREGGCEAYLSKPISVSKFLETVRQF 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|323527540|ref|YP_004229693.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384542|gb|ADX56633.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 247 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ IL+ +DD +R + + L G++V + +G + K+++E +L++ DI+MPE+D Sbjct: 1 MNQSILVVDDDPVVRELVSQYLEGRGFKVATLEHGMALQRKLQDERPALVVLDIMMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GI R D+ V+ +T A + L D L KPF +LV Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADD-------YLGKPFEPSELVAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 IRTVL 118 >gi|297570338|ref|YP_003691682.1| response regulator receiver protein [Desulfurivibrio alkaliphilus AHT2] gi|296926253|gb|ADH87063.1| response regulator receiver protein [Desulfurivibrio alkaliphilus AHT2] Length = 122 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + L K GY+ V +G A D +EE L+ DI MP ++G E Sbjct: 7 KILIVDDEYVFCKSLKQYLDKIGYQAVVATSGEHALDLAQEEVPDLMTLDIRMPGLNGYE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R L P++ V+ IT + VL KP +L ++ + +LL Sbjct: 67 VLSRIRRLAPEMPVVVITAVDVPRMEEMLQHSGAQAVLHKPVNLEEVRRVLEQLL 121 >gi|260870584|ref|YP_003236986.1| fused DNA-binding response regulator GlnG in two-component regulatory system with GlnL: response regulator/sigma 54 interaction protein [Escherichia coli O111:H- str. 11128] gi|257766940|dbj|BAI38435.1| fused DNA-binding response regulator GlnG in two-component regulatory system with GlnL: response regulator/sigma 54 interaction protein [Escherichia coli O111:H- str. 11128] gi|323177878|gb|EFZ63462.1| nitrogen regulation protein NR [Escherichia coli 1180] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|255533329|ref|YP_003093701.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255346313|gb|ACU05639.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 234 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 12/125 (9%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M QK ILL ED+D + + L GY+V + +G +A +EE F+L++ D+++PE Sbjct: 1 MQQKLRILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNE 113 MDG ++ + ++ ++F+T A N + K L KPF+L +L+ Sbjct: 61 MDGFQVCETIRLENTEVPILFLT-----AKNTSEDRVMGLKKGADDYLVKPFNLEELILR 115 Query: 114 VNRLL 118 V L+ Sbjct: 116 VGILV 120 >gi|224367481|ref|YP_002601644.1| putative aerobic respiration control sensor protein ArcB [Desulfobacterium autotrophicum HRM2] gi|223690197|gb|ACN13480.1| putative aerobic respiration control sensor protein ArcB [Desulfobacterium autotrophicum HRM2] Length = 549 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++ILL +D+ + K L + GY+V ++ A P F L++TD+ MP+M Sbjct: 422 ERILLVDDEIPILSLQKKLLERLGYKVTERSSSMEALRVFAANPGGFDLVVTDMTMPDMT 481 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 G LA++ T + PD+ ++ TGF+ +N D K L KP + EV R+L Sbjct: 482 GDNLAKKLTSMRPDIPIIICTGFSE-RMNKDLARKIGVKGFLMKPVIKSVMAKEVRRVL 539 >gi|254505487|ref|ZP_05117634.1| chemotaxis protein CheY [Vibrio parahaemolyticus 16] gi|219551604|gb|EED28582.1| chemotaxis protein CheY [Vibrio parahaemolyticus 16] Length = 127 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D +R+ + L AGY+V + N+G A KV F ++++D+ MP M G E Sbjct: 11 KILAVDDSVSIRQMVSHTLKDAGYQVETANDGQDALSKVMSTKFDVVISDVNMPNMGGFE 70 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A P K ++ +T + + L KPF+ L+ + R++ Sbjct: 71 LV-KALRAKPQYKFIPILMLTTETSTDKKMQGKSAGATGWLVKPFNPETLLKTLKRVI 127 >gi|253700421|ref|YP_003021610.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775271|gb|ACT17852.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1023 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LLA+D++ +R + L G+ V++ +G +A + RE E + ++ D+ MPE+DG Sbjct: 894 VLLADDEESIRALGQEMLETLGFRVLTACDGCAAVELFREKREEIACVVLDLTMPELDGE 953 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ELDP +V+ +G+ ++ + + KP+ L ++ ++ ++L Sbjct: 954 QAFNVLRELDPGARVILSSGYNEREVSRKFAGAGVSGFMQKPYKLAEMSRKLRQIL 1009 >gi|163849475|ref|YP_001637518.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163661080|gb|ABY28447.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 681 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + +LL EDD+ + +++L + Y V+ N A A + + E +L +D+VMP M+ Sbjct: 559 ETVLLVEDDEQVLGMAVESLEELRYRVIVTRNAAEALEHLHGVERIDILFSDVVMPGGMN 618 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PD+K++ +G+ A VL+KP+ +L + +L Sbjct: 619 GSQLAVEARRVRPDIKILLTSGYVANLDEGQVIGQGELPVLNKPYRRDELARSLRLVL 676 >gi|126731308|ref|ZP_01747115.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Sagittula stellata E-37] gi|126708219|gb|EBA07278.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Sagittula stellata E-37] Length = 444 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 53/103 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A V + ++++DI MP MDGI+ Sbjct: 6 KIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALGSVGADYPGIVISDIKMPGMDGIQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 ++ D L V+ ITG V + ++ L KPF+ Sbjct: 66 FLKKLMGTDSSLPVIMITGHGDVPMAVEAMRIGAFDFLEKPFN 108 >gi|126658533|ref|ZP_01729680.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126620120|gb|EAZ90842.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 416 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D + L L +AG ++ NG A +V +P L+L D++MPE+DG Sbjct: 8 KHILIVDDKPTNLKVLATTLTEAGLDIAVATNGKMALQQVANDPPELILLDVLMPEIDGF 67 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E + +A D+ ++F+T + + ++KPF +++ +N L + Sbjct: 68 ETCKQLKANPETKDIPIIFMTALSDTIDKVRGLSLGAVDYITKPFETEEVIARINTHLQL 127 Query: 121 K 121 + Sbjct: 128 R 128 >gi|94497083|ref|ZP_01303656.1| two component transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|307296677|ref|ZP_07576496.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|94423455|gb|EAT08483.1| two component transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|306877806|gb|EFN09031.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 207 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 55/112 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +D++ +R+ AL AGY+VV+ +G + + ++ D+ MPEMDG+E+ Sbjct: 7 IHLVDDEESIRKAASFALKTAGYDVVTYASGVEFLKEAKSAAVGCVILDVRMPEMDGLEV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ V+ +TG V++ + L KPF L+ V+R Sbjct: 67 QAAMAARGVNMPVIVLTGHGDVSVAVQAMKGGAVDFLEKPFEKAALLGAVSR 118 >gi|41565|emb|CAA28808.1| unnamed protein product [Escherichia coli K-12] Length = 468 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|87121704|ref|ZP_01077591.1| PAS:GGDEF protein [Marinomonas sp. MED121] gi|86162955|gb|EAQ64233.1| PAS:GGDEF protein [Marinomonas sp. MED121] Length = 376 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 5/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ + L +AL K Y V NNG A + ++++ +L+++D +MP + Sbjct: 1 MDKSILVVDDEPQILNALKRALRKQDYSVFYANNGEEAIEILKQQEVALIMSDYMMPGLS 60 Query: 61 GIELARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G EL A ++ P+ + ++G F V + K L+KP+ L+ ++N+ Sbjct: 61 GTELLTEAEKIQPNTIRIILSGHSDFQTVLQSIKHGVVH--KFLAKPWVNEVLIEQINKA 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|332981762|ref|YP_004463203.1| AraC family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699440|gb|AEE96381.1| two component transcriptional regulator, AraC family [Mahella australiensis 50-1 BON] Length = 529 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ +D++ +R+ L + + G ++ + +G +A +K++E +++ DI MP MDG Sbjct: 4 LLIVDDEETIRQGLRDYIPWNEMGINILGTAEDGINALEKIKELKPDIVMADIRMPRMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++LA+R + P++K++F+TG+ + + + KP DL+ + R+ Sbjct: 64 LQLAQRLKNIAPEIKMIFLTGYDDFSYAKQAVTLNVEDYILKPVSRNDLIECIQRV 119 >gi|324112298|gb|EGC06276.1| sigma-54 interaction domain-containing protein [Escherichia fergusonii B253] Length = 452 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I+ ED DD+R + L AGY V+SC + ++ ++ ++LTD+ +P + G+EL Sbjct: 10 IIYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSFSLIQSLQNIIVLTDVRLPGISGLEL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+D + V+ ITG V + ++ + KP L++ + R Sbjct: 70 LNYINEMDNKIPVILITGHGDVEMAVEAMRNGAFDFIEKPCSSDKLLSIIAR 121 >gi|323974270|gb|EGB69399.1| nitrogen regulation protein NR(I) [Escherichia coli TW10509] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|302557885|ref|ZP_07310227.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302475503|gb|EFL38596.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 253 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+AEDD+ + + L GY V ++G +A D+ + P LL+ D ++P +D Sbjct: 21 MSANVLVAEDDEKQAELIRRYLVHDGYAVTVVHDGPTALDETVKRPPDLLVLDWMLPGLD 80 Query: 61 GIELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E+ RR D+ ++ +T + + L D A ++KPF R+LV Sbjct: 81 GLEICRRIRATG-DMPILMLTARSTEDDLLLGLDIGA---DDYMTKPFRPRELV 130 >gi|300865937|ref|ZP_07110674.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336056|emb|CBN55832.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 452 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKA----GYEVVSCNNGASAYDKVREEP-FSLLLTDIV 55 M KIL +D+ D+ + + K Y+V NG A K++EEP ++LTDI Sbjct: 1 MPAKILFVDDEPDLESLISQRFRKKIRAEEYQVFFAYNGVEALAKLQEEPDIDIVLTDIN 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MP MDGI L + E+ +K + I+ + + + L+KP + +DL +N Sbjct: 61 MPVMDGIALLGKLNEIASLVKTIVISAYGDLGNIRKAMNAGAFDFLTKPINFQDLEITIN 120 Query: 116 RLLT 119 + L+ Sbjct: 121 KTLS 124 >gi|291279767|ref|YP_003496602.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290754469|dbj|BAI80846.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 212 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 55/108 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD+ + L + + V +C++ A + + E +LL D +MP++DGI Sbjct: 3 KILILDDDEQLLGNLKELFEDNDFTVFTCSDPGKALEILEYESPKILLVDYLMPQIDGIN 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ E D ++++ +T F L D+ +SKPF +L+ Sbjct: 63 FIKKIRETDKLIRIILMTAFPTYDLAVDAIKNGANDFVSKPFKFEELM 110 >gi|270262775|ref|ZP_06191046.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043459|gb|EFA16552.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 956 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 48/106 (45%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D RR L LG GY+VV+ N+G A D + ++LTD+ MP MDG L Sbjct: 830 LLVVDDHPINRRLLSDQLGSLGYQVVTANDGLDALDVLNRNTVDIVLTDVNMPNMDGYHL 889 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R + V+ +T A LSKP L L Sbjct: 890 TQRLRQQHFTSPVIGVTANALAEEKQRCMEAGMDNCLSKPVTLETL 935 >gi|256831083|ref|YP_003159811.1| Fis family two component sigma5-4 specific transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256580259|gb|ACU91395.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfomicrobium baculatum DSM 4028] Length = 458 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 59/106 (55%), Gaps = 4/106 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++R+ + L G + + + A++ + + + +++ DI +P+ +G+E Sbjct: 8 EILVVDDESNIRKLFSRELASPGRTIHTVGSAKEAFEHLHKHYYDIIILDIRLPDANGLE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHL 107 L + E P++ ++ ITG+A V + A KN ++KPF L Sbjct: 68 LMTKLLETVPNVAIILITGYADV--DNAVQAMKNGAYDYITKPFSL 111 >gi|255523754|ref|ZP_05390720.1| response regulator receiver protein [Clostridium carboxidivorans P7] gi|255512623|gb|EET88897.1| response regulator receiver protein [Clostridium carboxidivorans P7] Length = 119 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K G+EV+ NNG A + ++E ++ DI MP+MDGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNGFEVIGEGNNGLKAVELYKKERPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + DP K++ + + D+ + KPF ++ + +++ Sbjct: 63 EAVKAIKAFDPSAKIIMCSAMGQQTMVMDAIKAGAKDFIVKPFQPDRVLEAIKKVI 118 >gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED++++ RF+ L GYE +NG S D F L+L D+++PE+ G+E+ Sbjct: 4 VLVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALANDFDLILLDLMLPELSGLEV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR E + + ++ +T +V + KPF + +L+ V LL Sbjct: 64 ARRLRE-EKNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALL 116 >gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G A + + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRAEGHTVPLLILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|218701433|ref|YP_002409062.1| nitrogen regulation protein NR(I) [Escherichia coli IAI39] gi|218371419|emb|CAR19252.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator ; sigma54 interaction protein [Escherichia coli IAI39] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|218551144|ref|YP_002384935.1| nitrogen regulation protein NR(I) [Escherichia fergusonii ATCC 35469] gi|218358685|emb|CAQ91339.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator ; sigma54 interaction protein [Escherichia fergusonii ATCC 35469] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|254172389|ref|ZP_04879064.1| chemotaxis response regulator protein-glutamate methylesterase [Thermococcus sp. AM4] gi|214033318|gb|EEB74145.1| chemotaxis response regulator protein-glutamate methylesterase [Thermococcus sp. AM4] Length = 122 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASA---YDKVREEPFSLLLTDIVMPEM 59 ++L+ +D R L K +AG+EVV + G A Y K+R + +L DI+MP+M Sbjct: 3 RVLIVDDALFARILLRKIFTEAGHEVVGEASTGKEAVELYSKLRPDIVTL---DIIMPDM 59 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI R ++DP+ KV+ IT + + + + KPF ++ EV R+L+ Sbjct: 60 DGITALREIKKIDPNAKVIMITSVDSDKKLIECIEAGASGYIVKPFEPSQVLKEVERVLS 119 >gi|206603281|gb|EDZ39761.1| Putative two component transcriptional regulator, winged helix family [Leptospirillum sp. Group II '5-way CG'] Length = 222 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 16/127 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL EDD + + L+ +L GYE+ S + + + ++ E + ++L DI +P+ G Sbjct: 2 KHVLLVEDDPVISQTLVMSLPYRGYEIDSVASLSDGWKRLSEGKYDMILLDIQLPDGTGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS--------KPFHLRDLVNEV 114 EL RR E D + ++ +T ++ P + LS KPF L +L + Sbjct: 62 ELCRRLREKDSIVPILMVTA--------RTDEPSAVRALSMGADDYIRKPFGLDELTARM 113 Query: 115 NRLLTIK 121 +R++ K Sbjct: 114 DRMVERK 120 >gi|191173897|ref|ZP_03035417.1| nitrogen regulation protein NR [Escherichia coli F11] gi|331649713|ref|ZP_08350793.1| nitrogen regulation protein NR(I) [Escherichia coli M605] gi|190905855|gb|EDV65474.1| nitrogen regulation protein NR [Escherichia coli F11] gi|307628946|gb|ADN73250.1| nitrogen regulation protein NR(I) [Escherichia coli UM146] gi|330908187|gb|EGH36706.1| nitrogen regulation protein NR(1) [Escherichia coli AA86] gi|331041346|gb|EGI13496.1| nitrogen regulation protein NR(I) [Escherichia coli M605] Length = 472 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123 >gi|220913668|ref|YP_002488977.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219860546|gb|ACL40888.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 265 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++ ++ EDD D++ L + L G++VV NG ++RE L+ D+ +P++DG Sbjct: 7 NRRAVVVEDDKDIQMLLNRTLSMQGFDVVVAGNGMDGLARIREHQPELITLDLNLPDLDG 66 Query: 62 IELARRATELDPDLKVMFIT 81 E+ RR E D V+ IT Sbjct: 67 TEVCRRLREFS-DAYVVMIT 85 >gi|167567131|ref|ZP_02360047.1| probable two-component sensor/regulator [Burkholderia oklahomensis EO147] Length = 923 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D R + K L + G+ + +G A R F L+L D+ MPE+DG+ Sbjct: 696 KILVVDDVAVNRDIVGKMLRELGHRTRAAASGQLALKLGRSHVFDLVLMDVRMPELDGMA 755 Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+R LDPD ++ +T A+ A + + A L+KP L L + +N++ Sbjct: 756 TAKRWRHVAEGVLDPDTPIVALTANASPAEHERAKAAGMNGYLTKPVSLEQLADMINQVA 815 Query: 119 TIK 121 + + Sbjct: 816 STQ 818 >gi|153002987|ref|YP_001377312.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152026560|gb|ABS24328.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 457 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++ +D D R+ + + LG++ Y V + A A V F ++TD+ MP +DGIE Sbjct: 6 LMVIDDLDSARQMMKRTLGRS-YAVFDFASVAEALPAVERAEFDAIVTDLRMPGIDGIEG 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 RR E P++ V+ +T FA V ++ L KPF +L Sbjct: 65 MRRFKERVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEEL 110 >gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1410 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 8/117 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED ++ ++ L + GY NG + +R + + ++L D+ MPEMDG+E Sbjct: 1128 RILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALRRQTYDVILMDMQMPEMDGLE 1187 Query: 64 LARRATELDPDL--------KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 AR+ +L D +++ +T A + D A +SKP + LV+ Sbjct: 1188 AARQIKKLYGDREQDMSERPRIIAVTANAMESDRNDCIAAGMDDYISKPIRMEQLVS 1244 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 +++L+ +++ R+ L G + NG A + +R+ EPF + L ++ MP+ DG Sbjct: 980 KRLLIVDNNATNRQVLTLQTQAWGMLAKTAANGVEALNILRQGEPFDMALLEMQMPDFDG 1039 Query: 62 IELARRATELDPDLKVMFI 80 + LA+ +L P +V + Sbjct: 1040 LSLAKEIRKLSPYKRVPLV 1058 >gi|21674870|ref|NP_662935.1| sensory box histidine kinase/response regulator [Chlorobium tepidum TLS] gi|21648093|gb|AAM73277.1| sensory box histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 675 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L +D+ + + K GY + + N+ A RE+P F L++TD+ MPEM GI Sbjct: 549 VLFIDDEPATVNLVTIMMTKLGYNIRAENSPVEALKFFREQPDQFDLVITDLTMPEMTGI 608 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKN----AKVLSKPFHLRDLVNEVNRLL 118 +L+ ++ P + V+ +TG+ + D + P +L KP L L V +L Sbjct: 609 QLSSEIHKIAPSIPVILMTGYGKMI---DHDMPLRHYGINHLLKKPLKLAHLALAVKEVL 665 Query: 119 T 119 + Sbjct: 666 S 666 >gi|29349590|ref|NP_813093.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341500|gb|AAO79287.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1431 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD D+R FL + +G +EV +G S ++K L++ D++MP M+G Sbjct: 1170 RKVLIIEDDTDIREFLREEIG-VYFEVEVAADGTSGFEKASTYDADLIVCDVLMPGMNGF 1228 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 E+ R+ L + I ALN + + + ++KPF++ L+ + +L Sbjct: 1229 EVTRK---LKNEFTTSHIPIILLTALNIEEKYQEGIESGADAYITKPFNVSLLLARIFKL 1285 Query: 118 LTIKN 122 + +++ Sbjct: 1286 IELRD 1290 >gi|32400390|dbj|BAC78684.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERENGIPSTPVIALTAHAMVGDCEKCLAAQMDDYLSKPLRQNQLIQTILRCA 1239 Query: 119 TI 120 T+ Sbjct: 1240 TV 1241 >gi|86132961|ref|ZP_01051551.1| two-component system response regulator [Dokdonia donghaensis MED134] gi|85816479|gb|EAQ37667.1| two-component system response regulator [Dokdonia donghaensis MED134] Length = 243 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREE--PFSLLLTDIVMPEM 59 ILLAEDD D L + L +EV C +G A++ K E + + + D++MP+M Sbjct: 7 ILLAEDDFDFGSILKQYLEIHNFEVTWCKDGEEAHNAFAKAHSEGVTYDICVFDVMMPKM 66 Query: 60 DGIELARRATELDPDLKVMFITG 82 DG LA + ++P++ +F+T Sbjct: 67 DGFTLAEKVISINPEVPFVFLTA 89 >gi|117626141|ref|YP_859464.1| nitrogen regulation protein NR(I) [Escherichia coli APEC O1] gi|162138321|ref|YP_543400.2| nitrogen regulation protein NR(I) [Escherichia coli UTI89] gi|218560943|ref|YP_002393856.1| nitrogen regulation protein NR(I) [Escherichia coli S88] gi|300985893|ref|ZP_07177629.1| nitrogen regulation protein NR [Escherichia coli MS 200-1] gi|306813865|ref|ZP_07448041.1| nitrogen regulation protein NR(I) [Escherichia coli NC101] gi|331665517|ref|ZP_08366415.1| nitrogen regulation protein NR(I) [Escherichia coli TA143] gi|115515265|gb|ABJ03340.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein [Escherichia coli APEC O1] gi|218367712|emb|CAR05501.1| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator ; sigma54 interaction protein [Escherichia coli S88] gi|281180931|dbj|BAI57261.1| two-component regulator protein [Escherichia coli SE15] gi|294494068|gb|ADE92824.1| nitrogen regulation protein NR(I) [Escherichia coli IHE3034] gi|300306494|gb|EFJ61014.1| nitrogen regulation protein NR [Escherichia coli MS 200-1] gi|305852863|gb|EFM53310.1| nitrogen regulation protein NR(I) [Escherichia coli NC101] gi|315289573|gb|EFU48966.1| nitrogen regulation protein NR [Escherichia coli MS 110-3] gi|323949362|gb|EGB45251.1| nitrogen regulation protein NR(I) [Escherichia coli H252] gi|323954356|gb|EGB50141.1| nitrogen regulation protein NR(I) [Escherichia coli H263] gi|323964215|gb|EGB59698.1| nitrogen regulation protein NR(I) [Escherichia coli M863] gi|324012569|gb|EGB81788.1| nitrogen regulation protein NR [Escherichia coli MS 60-1] gi|324111510|gb|EGC05491.1| nitrogen regulation protein NR(I) [Escherichia fergusonii B253] gi|327250497|gb|EGE62205.1| nitrogen regulation protein NR [Escherichia coli STEC_7v] gi|331057202|gb|EGI29192.1| nitrogen regulation protein NR(I) [Escherichia coli TA143] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|330959163|gb|EGH59423.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 381 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GYEV +G ++ +R E F LL+TDI MP MDGI Sbjct: 258 KRVLVVDDSLTVRELERKLLVGRGYEVAVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 317 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 318 ELVTLLRRDTRLQ-SLPVMVVS 338 >gi|330996151|ref|ZP_08320041.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573655|gb|EGG55246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 805 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 19/127 (14%) Query: 6 LLAEDDDDMRRFLIKAL------GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +L DDD ++ L +A+ KA +E+VSC + +V + F LL TDI MP M Sbjct: 543 ILLIDDDRIQMQLTQAMLQQIQPEKADWEIVSCRTPEEVFHRVGQCRFDLLFTDIQMPSM 602 Query: 60 DGIELARRATELDP----DLKVMFITGFAAVALNPDSNA----PKNAKVLSKPFHLRDLV 111 +G EL ++ L+P L V+ IT A N A A L KPF+ +DL Sbjct: 603 NGFELLKKVRALNPPAHAQLPVVAIT-----ARNDMQEAFFREHGFATCLYKPFNQKDLA 657 Query: 112 NEVNRLL 118 + + L Sbjct: 658 QAIRKAL 664 >gi|315224421|ref|ZP_07866251.1| nitrogen regulation protein NtrX [Capnocytophaga ochracea F0287] gi|314945624|gb|EFS97643.1| nitrogen regulation protein NtrX [Capnocytophaga ochracea F0287] Length = 395 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ ED+ +RR L K L YEV +G +K+++E + L+L DI MP+MDG Sbjct: 11 KILIIEDESAIRRVLTKILVEESKEYEVEEAADGVEGVEKLKKEDYDLVLCDIKMPKMDG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ +L P++ + I+G + ++ +SKP L L+N V L Sbjct: 71 MEVLAEVKKLKPEIPFVMISGHGDLETAVNAMRLGAYDYISKPPDLNRLLNTVRNAL 127 >gi|331660419|ref|ZP_08361353.1| nitrogen regulation protein NR(I) [Escherichia coli TA206] gi|331052368|gb|EGI24405.1| nitrogen regulation protein NR(I) [Escherichia coli TA206] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|296122574|ref|YP_003630352.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296014914|gb|ADG68153.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 758 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPE 58 +ILLAED D R L LG+ G ++ +NG A + V+ PF L+L D+ MPE Sbjct: 470 RILLAEDGPDNRLLLSSWLGRLGVDLQMVSNGREAIEAVQGSLQVNRPFDLILMDMQMPE 529 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DG+E R + ++ +T + + +KP H L +++ + L Sbjct: 530 LDGLEATRELRKRGWSGPIIALTANVMASDRQQALTAGCTDFATKPIHREQLFSQIEQAL 589 >gi|258592568|emb|CBE68877.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 404 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DDD +R L + L G++V S + +A VR L+LTD + G+EL Sbjct: 6 ILVIDDDDQVRESLEQYLELLGHKVKSAPDAQAAIGHVRHG-VDLVLTDQRLQGTSGLEL 64 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L+ + + +TGF ++ ++ A + L KP L+DL V+ LL Sbjct: 65 IREIRKLNLRVPFVLMTGFPDISTVQEARALSVSAFLKKPLDLKDLARRVDVLL 118 >gi|288957521|ref|YP_003447862.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288909829|dbj|BAI71318.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 911 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 11/125 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVRE--EPFSLLLTDIVMPEM 59 IL+AED+ R+ L+ L GY GA +A D +R+ ++LLLTD+ MPE+ Sbjct: 642 ILVAEDNPVNRKVLLMQLQALGYAAEMAPGGAEALAALDAMRQGRRRYALLLTDVQMPEI 701 Query: 60 DGIELAR--RATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 DG EL R R+ E D L ++ IT AA A A VLSKP L L Sbjct: 702 DGFELTRRIRSGEAPADTGTRLPIIAITANAAPADIESYLAAGMDDVLSKPLELSQLAAT 761 Query: 114 VNRLL 118 + R + Sbjct: 762 LARWM 766 >gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271] Length = 236 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 11 MVMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GIELARR 67 G+++ +R Sbjct: 71 GLQVLQR 77 >gi|218692154|ref|YP_002400366.1| nitrogen regulation protein NR(I) [Escherichia coli ED1a] gi|218429718|emb|CAR10679.2| fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator ; sigma54 interaction protein [Escherichia coli ED1a] gi|222035580|emb|CAP78325.1| Nitrogen regulation protein NR(I) [Escherichia coli LF82] gi|312948438|gb|ADR29265.1| nitrogen regulation protein NR(I) [Escherichia coli O83:H1 str. NRG 857C] gi|315300253|gb|EFU59490.1| nitrogen regulation protein NR [Escherichia coli MS 16-3] gi|320196908|gb|EFW71530.1| Nitrogen regulation protein NR(I) [Escherichia coli WV_060327] gi|324006854|gb|EGB76073.1| nitrogen regulation protein NR [Escherichia coli MS 57-2] Length = 469 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|167574162|ref|ZP_02367036.1| probable two-component sensor/regulator [Burkholderia oklahomensis C6786] Length = 920 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D R + K L + G+ + +G A R F L+L D+ MPE+DG+ Sbjct: 693 KILVVDDVAVNRDIVGKMLRELGHRTRAAASGQLALKLGRSHVFDLVLMDVRMPELDGMA 752 Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A+R LDPD ++ +T A+ A + + A L+KP L L + +N++ Sbjct: 753 TAKRWRHVAEGVLDPDTPIVALTANASPAEHERAKAAGMNGYLTKPVSLEQLADMINQVA 812 Query: 119 TIK 121 + + Sbjct: 813 STQ 815 >gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ ++R + LG G+EV NGA A + ++ F L++ DI+MP +G + Sbjct: 6 ILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGPNGYQT 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ EL + ++F++ + + L+KPF +L++ L+ Sbjct: 66 CRKIRELS-NAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALI 118 >gi|163856589|ref|YP_001630887.1| nitrogen regulation protein NR(I) [Bordetella petrii DSM 12804] gi|163260317|emb|CAP42619.1| nitrogen regulation protein NR(I) [Bordetella petrii] Length = 503 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 58/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ + + +DD +R L KAL +AG S A + E + L++DI MP + Sbjct: 1 MSKPVWIVDDDQAIRWVLEKALARAGIPTRSFAQAADVLAALDVETPAALVSDIRMPGGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G++L R+ E P L V+ +T FA + + L+KPF + + ++ + R Sbjct: 61 GLDLLRQIKERHPHLPVIVMTAFADLDSTVSAFQGGAFDYLAKPFDVNEAISLIER 116 >gi|158521358|ref|YP_001529228.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158510184|gb|ABW67151.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 688 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 55/111 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+D R L K L G++V +NG A VR + ++L D MP MDGI+ Sbjct: 15 RLLVVDDEDQFRASLAKQLRNRGFKVYESSNGEDAIKIVRHKNPEVVLLDQKMPHMDGIQ 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + ++ P+++V+ T + + + L KP L L++ + Sbjct: 75 TLKELKKIRPEVQVIMHTAYGNIESARVTGKHDVFCYLEKPCDLNQLISMI 125 >gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Enterobacter sp. 638] gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp. 638] Length = 949 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 49/103 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ ++ N+G A + + + ++L+D+ MP MDG L Sbjct: 828 ILVVDDHPINRRLLADQLGSLGYQCLTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 887 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 888 TQRIRQLGMTLPVIGVTANALAEEKERCLESGMDSCLSKPVTL 930 >gi|66044555|ref|YP_234396.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. syringae B728a] gi|63255262|gb|AAY36358.1| Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. syringae B728a] Length = 789 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GYEV +G ++ +R E F LL+TDI MP MDGI Sbjct: 666 KRVLVVDDSLTVRELERKLLVSRGYEVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 725 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 726 ELVTLLRRDTRLQ-SLPVMVVS 746 >gi|25026789|ref|NP_736843.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259508073|ref|ZP_05750973.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492068|dbj|BAC17043.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259164296|gb|EEW48850.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 224 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 56/114 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+AEDDD + F+ + L + G+E +GA+A+ + F L++ D+ +P MDG Sbjct: 3 TERILIAEDDDGIADFIRRGLVQEGFECEVAVSGAAAFARAHSGDFDLMILDLGLPHMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ + L L ++ +T + S + KPF +L+ V Sbjct: 63 ADVLEQLRVLKVSLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVK 116 >gi|320160071|ref|YP_004173295.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319993924|dbj|BAJ62695.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 126 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ D+R + LG AG+EV++ NG A + R E L+L D+ MP M G E Sbjct: 3 KILIAEDEPDIRDLVKFTLGFAGHEVIAVGNGEEAVEAARAEKPDLILMDVRMPRMTGYE 62 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A A + DP + V+F++ + + ++ L KPF DL V LL Sbjct: 63 -ACAAMKADPSIAHIPVVFLSAKGQESEIQTGLSVGASEYLLKPFAPMDLTQRVAELLA 120 >gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 15/119 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KVRE L+L D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+AR + D+ ++ +T + L D ++KPF R+LV V Sbjct: 62 EVAREVRKT-FDMPIIMVTAKDSEIDKVLGLELGADD-------YVTKPFSNRELVARV 112 >gi|313905592|ref|ZP_07838954.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469539|gb|EFR64879.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 227 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I EDDD +R ++ L +G+EV + ++ ++ ++E+ L+L DI++P DGI + Sbjct: 2 IYCVEDDDSIRELMVYTLRASGFEVRGFQDASAFWNIMKEKKPELVLLDIMLPGEDGISI 61 Query: 65 AR--RATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RA+ + D+ V+ T + + DS A LSKPF + ++V+ + +L Sbjct: 62 LKKLRASPVTEDIPVIMATAKDSEYDTVIGLDSGAD---DYLSKPFGMMEMVSRIKAVL 117 >gi|301307839|ref|ZP_07213795.1| putative sensor histidine kinase/response regulator [Bacteroides sp. 20_3] gi|300834182|gb|EFK64796.1| putative sensor histidine kinase/response regulator [Bacteroides sp. 20_3] Length = 887 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDDD++R FL + L +++ + NG A + EE SL+++D++MPEM+G EL Sbjct: 640 ILITEDDDEVRCFLEREL-SLHFKIRTAANGKDALRVLEEEEISLVVSDVMMPEMNGFEL 698 Query: 65 AR 66 R Sbjct: 699 CR 700 >gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 545 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL+AED+ ++ + L K G++V NG A DK++E P F L+L DI MP DG Sbjct: 423 RILIAEDNKVNQKLIKMMLTKEGFQVDIAANGQEAVDKLQESPENFDLVLMDIQMPVKDG 482 Query: 62 IELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E + E +L ++ IT A A ++KP ++++ + R +T Sbjct: 483 FEATKAIREAGFHNLPIIAITAHALKGYREKCLASGMDDYVTKPIKKNEVISAIERQMTR 542 Query: 121 KN 122 N Sbjct: 543 AN 544 >gi|296272694|ref|YP_003655325.1| response regulator receiver protein [Arcobacter nitrofigilis DSM 7299] gi|296096868|gb|ADG92818.1| response regulator receiver protein [Arcobacter nitrofigilis DSM 7299] Length = 228 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 44/80 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL ED+D +R F++ L EV +NG A + E ++L+DI MP+M+G+E Sbjct: 15 ILCVEDEDGIREFIVSTLKYYFKEVYEASNGLEALEMYEEFRPKIILSDIEMPKMNGLEF 74 Query: 65 ARRATELDPDLKVMFITGFA 84 +R + D ++ +T ++ Sbjct: 75 VKRIRQNDLSTSIIMLTAYS 94 >gi|294010480|ref|YP_003543940.1| response regulator UhpA [Sphingobium japonicum UT26S] gi|292673810|dbj|BAI95328.1| response regulator UhpA [Sphingobium japonicum UT26S] Length = 207 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 55/112 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +D++ +R+ AL AGY+VV+ +G + + ++ D+ MPEMDG+E+ Sbjct: 7 IHLVDDEESIRKAASFALKTAGYDVVTYASGVEFLKEAKSAAVGCVILDVRMPEMDGLEV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ V+ +TG V++ + L KPF L+ V+R Sbjct: 67 QAAMAARGVNMPVIVLTGHGDVSVAVQAMKGGAVDFLEKPFEKAALLGAVSR 118 >gi|288926686|ref|ZP_06420599.1| DNA-binding response regulator RprY [Prevotella buccae D17] gi|315609003|ref|ZP_07883975.1| DNA-binding response regulator [Prevotella buccae ATCC 33574] gi|288336537|gb|EFC74910.1| DNA-binding response regulator RprY [Prevotella buccae D17] gi|315249383|gb|EFU29400.1| DNA-binding response regulator [Prevotella buccae ATCC 33574] Length = 232 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L Y V C +G Y + + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKNYTAVLCPDGEVGYREFLKTKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +LV + +L Sbjct: 66 LAQEIRQANAEIPIIFLT---AKTLKDD--ILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 226 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GY+V+ +NG + + L++ D+++PE++G+E Sbjct: 3 KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR ++ ++ ++ +T AV ++KPF + +L+ + R+ Sbjct: 63 VLRRIRKV-SEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|75907566|ref|YP_321862.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701291|gb|ABA20967.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 576 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 9/124 (7%) Query: 2 NQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE 58 N++++L DD+ + R + K+ L Y V++ ++G A +E S++L D++MP Sbjct: 454 NRELILVVDDEAIIREITKSSLEAYNYRVLTASDGEEAISIYTGYQEQISVVLLDMMMPS 513 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 MDG R+ +++P +K++ I+G + P +A N V LSKP ++LV ++ Sbjct: 514 MDGAIAIRKLQKINPQIKIIAISGLLS---EPHESAIANMGVKAFLSKPCTAKELVQTIH 570 Query: 116 RLLT 119 + T Sbjct: 571 TVHT 574 >gi|23012559|ref|ZP_00052614.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 511 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 46/88 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILLAED+ ++ L + G+ V NNG A +K+++ F L+L D+ MPEMDG E Sbjct: 275 SILLAEDNVFNQKVAAGLLNREGHRVTLANNGLEALEKLQDGRFDLILMDMQMPEMDGPE 334 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD 91 RR L L + I A A+ D Sbjct: 335 ATRRIRGLPGALAAIPIIALTANAMADD 362 >gi|266619273|ref|ZP_06112208.1| DNA-binding response regulator [Clostridium hathewayi DSM 13479] gi|288869189|gb|EFD01488.1| DNA-binding response regulator [Clostridium hathewayi DSM 13479] Length = 267 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 E NG + VR L+L DI MP+M+G+E R A ELDP +K+ +TG+ Sbjct: 38 EFFEAENGEEGLEAVRSHRIDLILADINMPKMNGLEFCRLAKELDPSIKIAILTGY 93 >gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 19/127 (14%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP++DG E+ Sbjct: 6 ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKIDGYEV 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN-- 115 AR+ + ++ ++F++ + L D ++KPF +LV VN Sbjct: 66 ARQ-IRIKHNMPIIFLSAKTSDFDKVTGLVLGADD-------YMTKPFSPIELVARVNAQ 117 Query: 116 --RLLTI 120 R LT+ Sbjct: 118 LRRFLTL 124 >gi|240146170|ref|ZP_04744771.1| transcriptional activator protein Irlr [Roseburia intestinalis L1-82] gi|257201702|gb|EEU99986.1| transcriptional activator protein Irlr [Roseburia intestinalis L1-82] Length = 224 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I LAED+ D+ +++ L + GY V C +G +A D + + ++ DI+MP+ DG Sbjct: 2 RIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGFT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R + V+F+T AV+ L KPF +L Sbjct: 62 VLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEEL 108 >gi|217969736|ref|YP_002354970.1| response regulator receiver protein [Thauera sp. MZ1T] gi|217507063|gb|ACK54074.1| response regulator receiver protein [Thauera sp. MZ1T] Length = 121 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +L+ +D +R+ + +L AGY+V+ +G A K+ + L+++D+ MP MD Sbjct: 1 MSKTVLIVDDSASLRQVVSLSLKGAGYQVIEACDGRDALGKLGGQKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPDLK----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GI R + +P K +M T A A A V+ KPF + ++ V++ Sbjct: 61 GIAFVREVKK-NPSYKFTPVIMLTTEAAEEKKRLGQEAGARAWVV-KPFQPQQMLAAVSK 118 Query: 117 LL 118 L+ Sbjct: 119 LV 120 >gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 1139 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 9/116 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR ++++ L K Y V + +G +A + P L+L+DI+MP +DG Sbjct: 645 RILLADDNADMRDYVMRLL-KGSYRVEAVADGEAALKAALKHPPDLILSDIMMPRLDGFG 703 Query: 64 LARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R +T L P V+ ++ A + L+KPF +L+ V Sbjct: 704 LLREVRNNPSTRLIP---VILLSARAGEESRVEGLGHGADDYLTKPFSAHELLARV 756 >gi|170749966|ref|YP_001756226.1| histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656488|gb|ACB25543.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 539 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-M 59 + IL+ +D +D+ L GY + +N A + + LL TD++MP M Sbjct: 414 TETILIVDDREDVAELARTILRDFGYTTLVASNAREALEILDSSGKVDLLFTDLIMPGGM 473 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A P LKV+ TG+A +L +L+KP+ +LV V +L Sbjct: 474 NGVLLAREARRRQPKLKVLLATGYAEASLERTDIGGSEFDLLNKPYRRTELVRRVRAIL 532 >gi|170695744|ref|ZP_02886886.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170139349|gb|EDT07535.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 247 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ IL+ +DD +R + + L G++V + +G + K+++E +L++ DI+MPE+D Sbjct: 1 MNQSILVVDDDPVVRELVSQYLEGRGFKVATLEHGMALQRKLQDERPALVVLDIMMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GI R D+ V+ +T A + L D L KPF +LV Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADD-------YLGKPFEPSELVAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 IRTVL 118 >gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus C3-41] gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Lysinibacillus sphaericus C3-41] Length = 230 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ + R + K L K+GY V + +G A + + L++ D+ +P+MDGIE Sbjct: 2 KLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D+K++ ++ +A+ + D A L KPF ++L + LL Sbjct: 62 VLEQIRVQNEDVKILILSARSAIHDKIMGLDCGAN---DYLIKPFDFQELDARIRNLL 116 >gi|39933220|ref|NP_945496.1| response regulator receiver CheY1 [Rhodopseudomonas palustris CGA009] gi|192288579|ref|YP_001989184.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] gi|39652845|emb|CAE25587.1| response regulator receiver, CheY1 [Rhodopseudomonas palustris CGA009] gi|192282328|gb|ACE98708.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] Length = 121 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D +R+ + L AG+ VV +GA K + L++TD+ MP M+G+EL Sbjct: 4 ILTVDDSPSIRQMIKVTLEPAGHSVVEAGDGAQGLSKAQATKVDLVITDLNMPVMNGLEL 63 Query: 65 ARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A P+ L ++F+T + A+ ++ + ++KPF L++ V++L+ Sbjct: 64 I-KALRKQPNLVGLPIVFLTTESNDAVKQEAKSCGATGWITKPFKPEQLLSVVSKLV 119 >gi|299148516|ref|ZP_07041578.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298513277|gb|EFI37164.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1428 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD+D+R FL + L A +EV +G S ++K L++ D++MP M G Sbjct: 1175 HKILVIEDDNDIRGFLQEEL-SAYFEVEVAADGISGFEKACNYDADLIICDVLMPGMTGF 1233 Query: 63 ELARRATELDPDLKVMFITGFAAVAL-----NPDSN---APKNAKV-LSKPFHLRDLVNE 113 E+ ++ LK F T + L +PD + A V ++KPF + L+ + Sbjct: 1234 EVTKK-------LKTEFATSHIPIILLTALTSPDKHLEGLEAGADVYVAKPFSFKLLLAQ 1286 Query: 114 VNRLL 118 V RL+ Sbjct: 1287 VFRLI 1291 >gi|296271667|ref|YP_003654298.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296095842|gb|ADG91792.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 213 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ + + + K L GY+V S ++G AYD + ++ L DI +P +DGI+ Sbjct: 2 KILLLEDNTKLSQTISKRLALKGYKVDSFSDGQKAYDSI-SNGYNCFLLDINVPNIDGIK 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + ++ + ++ ++ I+ + + ++ L KPF + +L ++ +L I N Sbjct: 61 ILKKIRDYYTEVPIIIISSTVELDIIKEAYDYGCNDYLKKPFFIDELEIKIEKLCKITN 119 >gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 968 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61 ILL ED++ R ++ L + G+ V + NGA A +KV+ + L+L D+ MP M+G Sbjct: 847 ILLVEDNELNREIAVEILNEYGFLVDTAENGAEAVEKVKNSTSGKYDLVLMDVQMPVMNG 906 Query: 62 IELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 E ++ L DP L + I A A + D + LSKP + +L++ + R Sbjct: 907 YEATKQIRALDDPALSGITILAMTANAFDEDRKKALEYGMDGFLSKPIVIEELISTLQRN 966 Query: 118 L 118 L Sbjct: 967 L 967 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 K L+ +DD + + K L + G +G A + R+ + F + D +P+ Sbjct: 704 KALVVDDDFNTCDSVTKMLVRVGMRSEWTLSGKEAVLRARQSMELGDAFHAYIIDWRLPD 763 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 M+GIE+ R+ L D ++ +T + + ++ A +KP + D+ Sbjct: 764 MNGIEVTRQIRSLGDDTPIIILTAYDWSDIEAEARAAGVTAFCAKPLFMSDI 815 >gi|295086765|emb|CBK68288.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1385 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD+D+R FL + L A +EV +G S ++K L++ D++MP M G Sbjct: 1132 HKILVIEDDNDIRGFLQEEL-SAYFEVEVAADGISGFEKACNYDADLIICDVLMPGMTGF 1190 Query: 63 ELARRATELDPDLKVMFITGFAAVAL-----NPDSN---APKNAKV-LSKPFHLRDLVNE 113 E+ ++ LK F T + L +PD + A V ++KPF + L+ + Sbjct: 1191 EVTKK-------LKTEFATSHIPIILLTALTSPDKHLEGLEAGADVYVAKPFSFKLLLAQ 1243 Query: 114 VNRLL 118 V RL+ Sbjct: 1244 VFRLI 1248 >gi|317051147|ref|YP_004112263.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316946231|gb|ADU65707.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 208 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L AED+ + + L K +V NG A DK + +++ DI MP M+GIEL Sbjct: 16 VLYAEDNSTVLKMTRDFLAKFFNQVEVARNGQEALDKYNPQKHDIVIMDINMPAMNGIEL 75 Query: 65 ARRATELDPDLKVMFITG 82 RR E++PD + +FIT Sbjct: 76 TRRILEINPD-QAIFITS 92 >gi|260642119|ref|ZP_05859255.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623261|gb|EEX46132.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1206 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD+D+R FL + L A +EV +G S ++K L++ D++MP M G Sbjct: 951 HKILVIEDDNDIRGFLQEEL-SAYFEVEVAADGISGFEKACNYDADLIICDVLMPGMTGF 1009 Query: 63 ELARRATELDPDLKVMFITGFAAVAL-----NPDSN---APKNAKV-LSKPFHLRDLVNE 113 E+ ++ LK F T + L +PD + A V ++KPF + L+ + Sbjct: 1010 EVTKK-------LKTEFATSHIPIILLTALTSPDKHLEGLEAGADVYVAKPFSFKLLLAQ 1062 Query: 114 VNRLL 118 V RL+ Sbjct: 1063 VFRLI 1067 >gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 225 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRSEGHTVPLLILTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|253574727|ref|ZP_04852067.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845773|gb|EES73781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 520 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ +D+ +R L + G GYEVV NG A +K ++ L++ DI MP MD Sbjct: 3 KVLIVDDEPKLREGLRTFIDWGAYGYEVVDMAANGNEALEKYQQYHPDLVVADIRMPGMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 G++L + DP+L ++ ++G+A + + + L KP Sbjct: 63 GLQLIEKLRAQDPNLHILILSGYADFSYAKKAMTHRADGYLLKP 106 >gi|237721289|ref|ZP_04551770.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449085|gb|EEO54876.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1428 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD+D+R FL + L A +EV +G S ++K L++ D++MP M G Sbjct: 1175 HKILVIEDDNDIRGFLQEEL-SAYFEVEVAADGISGFEKACNYDADLIICDVLMPGMTGF 1233 Query: 63 ELARRATELDPDLKVMFITGFAAVAL-----NPDSN---APKNAKV-LSKPFHLRDLVNE 113 E+ ++ LK F T + L +PD + A V ++KPF + L+ + Sbjct: 1234 EVTKK-------LKTEFATSHIPIILLTALTSPDKHLEGLEAGADVYVAKPFSFKLLLAQ 1286 Query: 114 VNRLL 118 V RL+ Sbjct: 1287 VFRLI 1291 >gi|218779536|ref|YP_002430854.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760920|gb|ACL03386.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1020 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL +D++ + + L GY+V + A + R++ L++ D++MPEM Sbjct: 902 ETILLIDDEEVIITTGEEILRALGYQVFVARSPHEALEIFRDQAPKIDLVIMDMIMPEMQ 961 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL TE+ PD++V+ +G++ + KPF+L +L ++ +L Sbjct: 962 GIELYDHLTEIRPDVRVLLSSGYSLNGQASSIIEKGCDGFIQKPFNLEELSQKIREIL 1019 >gi|254462752|ref|ZP_05076168.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083] gi|206679341|gb|EDZ43828.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083] Length = 745 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 38/64 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL AED+D R L L + GY V +GA AY+ + + F L+LTD MP +DG E Sbjct: 608 RILAAEDNDINRVVLESQLAQLGYTPVIVEDGAKAYEAWKLDDFDLILTDCQMPIVDGFE 667 Query: 64 LARR 67 L R+ Sbjct: 668 LTRK 671 >gi|157148541|ref|YP_001455860.1| hypothetical protein CKO_04368 [Citrobacter koseri ATCC BAA-895] gi|157085746|gb|ABV15424.1| hypothetical protein CKO_04368 [Citrobacter koseri ATCC BAA-895] Length = 1060 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 44/81 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D R L + L +G NG A ++++ + LL+TD+ MP MDGIE Sbjct: 831 RVLIVDDHPSSRLLLKRQLATSGIVADEAENGEEALRHLQQQHYDLLITDLNMPAMDGIE 890 Query: 64 LARRATELDPDLKVMFITGFA 84 L R+ + + DL + +T A Sbjct: 891 LTRQVRKFNRDLTIWGLTASA 911 >gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 273 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 28 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 87 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 88 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 141 >gi|124516440|gb|EAY57948.1| putative two component transcriptional regulator, winged helix family [Leptospirillum rubarum] Length = 222 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 16/127 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL EDD + + L+ +L GYE+ S + + + ++ E + ++L DI +P+ G Sbjct: 2 KHVLLVEDDPVISQTLVMSLPYRGYEIDSVASLSDGWKRLSEGKYDMILLDIQLPDGTGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS--------KPFHLRDLVNEV 114 EL RR E D + ++ +T ++ P + LS KPF L +L + Sbjct: 62 ELCRRLREKDSIVPILMVTA--------RTDEPSAVRALSMGADDYIRKPFGLDELTARM 113 Query: 115 NRLLTIK 121 +R++ K Sbjct: 114 DRMVERK 120 >gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 236 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ILL EDD +R +AL + GY V G + EP L++ DI++P +G Sbjct: 3 SSTILLVEDDPSLRVLTARALQENGYVVRPAATGPEMWIAFNAEPIDLIILDIMLPGTNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IEL R+ + D+ ++FI+ + L+KPF R+L+ V +L Sbjct: 63 IELCRQLRQ-KSDVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVL 118 >gi|219847784|ref|YP_002462217.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219542043|gb|ACL23781.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 293 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD ++ L ++L + + + + + +A ++++P +++LTD MP M G+EL Sbjct: 12 VLIVDDDPNVTSSLARSL-RDRFTIFTATDAETALHILQQQPVAVILTDQRMPTMSGVEL 70 Query: 65 ARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA EL P+ + I+G+ AL N +SKP+ + L ++ +L+ Sbjct: 71 LARARELQPEARGFIISGYTDPAALIEAINLGSVQGFMSKPWDIAALRRKLEQLV 125 >gi|319898873|ref|YP_004158966.1| two-component system response regulator [Bartonella clarridgeiae 73] gi|319402837|emb|CBI76388.1| two-component system response regulator [Bartonella clarridgeiae 73] Length = 121 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +K+++ ED++ +M+ F LI+A GYE V NG A D R SL+L DI +P Sbjct: 1 MLKKVMIVEDNELNMKLFRDLIEA---CGYETVETRNGLIALDLARFSKPSLILMDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEV 114 E+ GI++ ++ E D +LK + I A A+ D A + +SKP + + V Sbjct: 58 EVSGIDIIKQLKE-DGELKSIPIIAVTAFAMKGDEERIRASGCEEYMSKPISVPHFITMV 116 Query: 115 NRLL 118 L Sbjct: 117 KSFL 120 >gi|325108211|ref|YP_004269279.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968479|gb|ADY59257.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 797 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 ++LLAED D ++ + L KAG +V NGA A +K+ + EPF L+L D+ MP Sbjct: 667 RLLLAEDGQDNQKLISFLLKKAGADVTIAENGAIAVEKILDASTFGEPFDLVLMDMQMPI 726 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 MDG R +L ++ +T A A + +KP + + L+ + Sbjct: 727 MDGYTATRMLRRQGINLPIVALTAHAMSGDREKCLAAGCSDFATKPINRQRLIQTI 782 >gi|302341533|ref|YP_003806062.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638146|gb|ADK83468.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 993 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 + IL+ +D+ + + L AGY+V++ G A + + R + SL++ D+ MP M Sbjct: 874 ETILVVDDEAAILDVSTELLQGAGYKVITARCGEDALEIYRTRGQAISLVIMDLGMPGMG 933 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G + LDP++KV+ +G++ DS A + KP+ L DL+ + + Sbjct: 934 GQRALQELKRLDPEVKVLISSGYSGDGPVKDSLAAGALGFIMKPYRLGDLLEKAH 988 >gi|262198905|ref|YP_003270114.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262082252|gb|ACY18221.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 510 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D+ + R + + L Y+V + G A D + + F L+L D++MPE G+ Sbjct: 392 RRLLVIDDEPAVLRVIKRML--KDYDVTTSQGGQEALDYLLQGDFDLILCDLMMPEYTGM 449 Query: 63 ELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L +R + P++ + MF+TG A + + L KPF L + VN+ L+ Sbjct: 450 DLYQRTADDRPEIIDRFMFVTGGAFTKQTESFLRSVSKEALGKPFTTAQLRDAVNKRLSA 509 Query: 121 K 121 + Sbjct: 510 R 510 >gi|240136800|ref|YP_002961267.1| putative sensor hybrid histidine kinase with PAS/PAC motif and response regulator receiver domains [Methylobacterium extorquens AM1] gi|240006764|gb|ACS37990.1| putative sensor hybrid histidine kinase with PAS/PAC motif and response regulator receiver domains [Methylobacterium extorquens AM1] Length = 681 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + +LL EDD+ + +++L + Y V+ N A A + + E +L +D+VMP M+ Sbjct: 559 ETVLLVEDDEQVLGMAVESLEELRYRVIVTRNAAEALEHLHGVERIDILFSDVVMPGGMN 618 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PD+K++ +G+ A VL+KP+ +L + +L Sbjct: 619 GSQLAVEARRVRPDIKILLTSGYVANLDEGQVIGQGELPVLNKPYRRDELARSLRLVL 676 >gi|206890715|ref|YP_002248576.1| FrgC [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742653|gb|ACI21710.1| FrgC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 147 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 52/111 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D++ + + + LG G +V + G A K + F ++ D+VMP GIE+ Sbjct: 10 VLLVDDEEQFLKVVSQRLGMRGLKVEAATTGEEAIKKADQRDFDAIILDLVMPGKSGIEV 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + PDL+++ +TG V ++ + KP L+ ++ Sbjct: 70 LKEIKAKHPDLQIIILTGHGTVEAGVEAIKEGAIDFMQKPVDFEKLMKKIE 120 >gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 503 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + + L + L GY+V S G++ + P L+L D+ MPEM+G E+ Sbjct: 8 ILVIDDTPENLQLLTRLLTAQGYKVRSVTKGSTGCRAAQSAPPDLVLLDVNMPEMNGYEV 67 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +A D+ V+FI+ V + + ++KPF + +++ V LTI Sbjct: 68 CQQLKARPETQDIPVIFISAHEDVLEKVKAFSMGGVDYITKPFQVEEVLARVEHHLTI 125 >gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550] gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 213 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKERPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +KV+ ++ F+ Sbjct: 61 MDGIEATKRLKQYDETIKVLILSSFS 86 >gi|160888672|ref|ZP_02069675.1| hypothetical protein BACUNI_01089 [Bacteroides uniformis ATCC 8492] gi|156861986|gb|EDO55417.1| hypothetical protein BACUNI_01089 [Bacteroides uniformis ATCC 8492] Length = 1317 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED +M+ F++K L + Y V++ NG A ++E +L+++DI+MPEMDG+EL Sbjct: 1073 LLVVEDSLEMQAFVVKQL-SSEYRVLTAVNGVEALKVLKEHTVNLVISDIMMPEMDGLEL 1131 Query: 65 ARR-ATELD 72 +ELD Sbjct: 1132 CEHLKSELD 1140 >gi|218528101|ref|YP_002418917.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520404|gb|ACK80989.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 681 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + +LL EDD+ + +++L + Y V+ N A A + + E +L +D+VMP M+ Sbjct: 559 ETVLLVEDDEQVLGMAVESLEELRYRVIVTRNAAEALEHLHGVERIDILFSDVVMPGGMN 618 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PD+K++ +G+ A VL+KP+ +L + +L Sbjct: 619 GSQLAVEARRVRPDIKILLTSGYVANLDEGQVIGQGELPVLNKPYRRDELARSLRLVL 676 >gi|332702334|ref|ZP_08422422.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552483|gb|EGJ49527.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 667 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN K+LL +D++ +RR L +L GY+V + +G ++L DI MP MD Sbjct: 3 MNMKLLLIDDEEGIRRMLGMSLADLGYDVHTAADGQEGLKLFDWLAPDIVLLDIKMPGMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIE+ R D +V+ I+G + L S ++KP +RD + ++ Sbjct: 63 GIEVLRNIKARKIDAEVIMISGHGDLDLAIKSLQLDAVDFVTKP--IRDEILQI 114 >gi|330968995|gb|EGH69061.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. aceris str. M302273PT] Length = 789 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GYEV +G ++ +R E F LL+TDI MP MDGI Sbjct: 666 KRVLVVDDSLTVRELERKLLVSRGYEVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 725 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 726 ELVTLLRRDTRLQ-SLPVMVVS 746 >gi|303235767|ref|ZP_07322374.1| response regulator receiver domain protein [Prevotella disiens FB035-09AN] gi|302484214|gb|EFL47202.1| response regulator receiver domain protein [Prevotella disiens FB035-09AN] Length = 235 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KILL EDD+++ L + L Y+ C +G Y + + + + D++MP+ DG Sbjct: 4 NFKILLCEDDENLGTLLSEYLQAKDYQADLCPDGEIGYKTFLKNKYDICVLDVMMPKKDG 63 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 LA+ + + ++ ++F+T A + D ++KPF + +LV + Sbjct: 64 FTLAQEIRQTNAEIPIIFLTAKQLKEDILAGFKIGADD-------YITKPFSMEELVFRI 116 Query: 115 NRLL 118 +L Sbjct: 117 EAIL 120 >gi|299534866|ref|ZP_07048195.1| response regulator [Lysinibacillus fusiformis ZC1] gi|298729711|gb|EFI70257.1| response regulator [Lysinibacillus fusiformis ZC1] Length = 221 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 6/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD+ +R+ ++ + K ++V + +NG A + + + + L++ D +MPE+ GI+ Sbjct: 2 KILIAEDDNRLRKNIVHIIQKEFHQVDAVDNGQHALEYILFQTYDLVILDWMMPELSGID 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + A + ++ +T + L D+ A + KPF + +L+ + +L Sbjct: 62 VCKEARRNGYEGGILILTAKDDSNDIILGLDAGAD---DYVVKPFKMEELLARIRAILRR 118 Query: 121 KN 122 KN Sbjct: 119 KN 120 >gi|291534287|emb|CBL07399.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I LAED+ D+ +++ L + GY V C +G +A D + + ++ DI+MP+ DG Sbjct: 2 RIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGFT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R + V+F+T AV+ L KPF +L Sbjct: 62 VLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEEL 108 >gi|83859607|ref|ZP_00953127.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83851966|gb|EAP89820.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 546 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ R + L G+ C G A + ++ + F L+L D+ MP +DG+E Sbjct: 413 RILLVEDNAMNRAVIEGFLNLRGWGCTICETGEQALELLQTDGFDLILMDVRMPGLDGLE 472 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 + RR ++ ++ I A AL + A + SKP E++RLLT Sbjct: 473 VTRRIRQMRSPVRATPILALTANALREEQAQCLRAGMDGYASKPIQREAFFAEMDRLLT 531 >gi|94310569|ref|YP_583779.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354421|gb|ABF08510.1| DNA-binding response regulator in two-component regulatory system [Cupriavidus metallidurans CH34] Length = 230 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + L+ +L ++G+ V ++GASA + + ++L + DI MP +DG+E Sbjct: 2 RILLAEDNLKLAESLVDSLSQSGFAVDCMHDGASADHLLTTQDYALAILDIGMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RR + + V+ +T +V L+KPF L +L Sbjct: 62 VLRRLRQRRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFALNEL 108 >gi|301058252|ref|ZP_07199295.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300447649|gb|EFK11371.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 159 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 57/114 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KILL +D+ R + K L GY V + N+G +A + +E F +++ D+ MP MDG Sbjct: 3 GSKILLVDDEVVFTRNMSKLLTARGYRVTAVNSGDAAIQALDKEDFEVVVLDLKMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + +L + + +TG A+ ++ L+KP + DLV ++ Sbjct: 63 LTTLKEIKKLGLFTETLILTGHGAIDTALEAIKLGAYDYLTKPCEIDDLVTKIE 116 >gi|299065362|emb|CBJ36531.1| Sensor protein [Ralstonia solanacearum CMR15] Length = 995 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 37/63 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED R + K L GY V +GA+A ++R+ F LLTD MP +DG +L Sbjct: 738 ILVAEDHPINRELIAKQLRLLGYRVTLAEDGAAALHRLRDTRFDALLTDCCMPRLDGFDL 797 Query: 65 ARR 67 AR+ Sbjct: 798 ARQ 800 >gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 250 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+AEDD+ R + L + G V + ++G SA D+ R L++ D++MP++D Sbjct: 1 MSARILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+++ R D + ++ +T A + L D A ++KP+ R+L V L Sbjct: 61 GLDVC-RILRTDSQVPILLLTARATEEDMLLGLDLGA---DDYMTKPYSPRELTARVRAL 116 Query: 118 L 118 L Sbjct: 117 L 117 >gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] Length = 1325 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+++L+ +D+D R L L + VV+ +NG A +++ +PF +L D MP M+G Sbjct: 851 NKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNG 910 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVL-SKPFHLRDLVNEV 114 IEL R L K +T + +N DS K L KP + +L++ + Sbjct: 911 IELLTRVKSLGLRDHTKCFLVTAYGR-DINLDSENSKLIDALIVKPVNPSNLLDAI 965 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QK+LL ED++ + + L + G V NNG A +K+ F L+L D+ MP MDGI Sbjct: 992 QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051 >gi|260428509|ref|ZP_05782488.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Citreicella sp. SE45] gi|260423001|gb|EEX16252.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Citreicella sp. SE45] Length = 434 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I + EDD D R L +G AG+E +G++A R L+LTD+ MP MD Sbjct: 1 MTALIHVVEDDGDHRHALCDLIGAAGHEAEGFASGSAALAAERRP--DLVLTDLRMPGMD 58 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + DPD V+ I+G +A + L KP+ L+ + R L Sbjct: 59 GQAVLEAVRRRDPDCPVVMISGHGDLAQAVQAMRAGAEDFLEKPYDGMHLLTVIERGL 116 >gi|190895341|ref|YP_001985633.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190699286|gb|ACE93370.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 644 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 11/116 (9%) Query: 6 LLAEDDDDM----RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++A DDD + +++ LG +E ++ G A D +R+EP L++ D MP M G Sbjct: 531 IVAVDDDGLVLMNTTLMLEDLGHTVFEAMA---GPEALDILRKEPVDLVICDHAMPRMTG 587 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +LA P + ++ TG+A + +N P+ L KPF L + ++R+ Sbjct: 588 AQLAEAIRSEWPKMPIILATGYADLPDGAGANLPR----LGKPFSQAQLADAISRI 639 >gi|170749614|ref|YP_001755874.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656136|gb|ACB25191.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 696 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 7/112 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 + +L+ EDD D+R ++ L ++V+S +GA A D ++ P +L+ +D+ MP M Sbjct: 572 GRAVLVVEDDADVRSTVVSTLEALAFKVLSATDGAEAVDMLQNVPDIALVFSDVNMPGAM 631 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 GI+L + P ++++ +G+ + N D+N +L KP+ DL+ Sbjct: 632 TGIDLGHLVRQRWPKIQILLSSGY--LKENQDTNG---FALLQKPYRAADLI 678 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%) Query: 4 KILLAEDDDDMRRFLIKA--LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ DDD R L + L ++V N+ A + E F+++L D+ MP MDG Sbjct: 31 KILIV--DDDQRNLLAASEILADPAIDMVLANSPEEALRRALREDFAVILLDVQMPRMDG 88 Query: 62 IELAR--RATELDPDLKVMFIT 81 E+A R+ + ++F+T Sbjct: 89 YEVAALIRSRSRTSRVPILFLT 110 >gi|170769622|ref|ZP_02904075.1| nitrogen regulation protein NR(I) [Escherichia albertii TW07627] gi|170121430|gb|EDS90361.1| nitrogen regulation protein NR(I) [Escherichia albertii TW07627] Length = 469 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|167561696|ref|ZP_02354612.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167568932|ref|ZP_02361806.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 250 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 59/114 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NGA A + + F LL+ D+ +P+M G++ Sbjct: 5 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGAEADTALSMQTFDLLILDLGLPKMPGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 65 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 118 >gi|161486043|ref|NP_756672.2| nitrogen regulation protein NR(I) [Escherichia coli CFT073] gi|227885396|ref|ZP_04003201.1| nitrogen regulation protein NR(I) [Escherichia coli 83972] gi|300976533|ref|ZP_07173516.1| nitrogen regulation protein NR [Escherichia coli MS 45-1] gi|227837654|gb|EEJ48120.1| nitrogen regulation protein NR(I) [Escherichia coli 83972] gi|300410105|gb|EFJ93643.1| nitrogen regulation protein NR [Escherichia coli MS 45-1] gi|307556011|gb|ADN48786.1| nitrogen regulation protein NR(I) [Escherichia coli ABU 83972] gi|315292783|gb|EFU52135.1| nitrogen regulation protein NR [Escherichia coli MS 153-1] Length = 469 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|149908548|ref|ZP_01897210.1| nitrogen regulation protein NR(I) [Moritella sp. PE36] gi|149808382|gb|EDM68319.1| nitrogen regulation protein NR(I) [Moritella sp. PE36] Length = 472 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD +R L KAL +E + ++ + +K+ E ++++DI MP+M G+EL Sbjct: 6 IWIVDDDSSIRWVLDKALKSQQFETSAFSDAHALLNKLEFEQPDIIISDIRMPKMSGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + PDL ++ +T + + + + L KPF + + V+ R +T Sbjct: 66 MAKVHAIHPDLPIIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAVSLATRAVT 120 >gi|110644208|ref|YP_671938.1| nitrogen regulation protein NR(I) [Escherichia coli 536] gi|110345800|gb|ABG72037.1| nitrogen regulation protein NR(I) [Escherichia coli 536] Length = 469 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 932 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 ILLAEDD R + ++L + ++ NG A + + P L+L DI MP M+G E Sbjct: 816 ILLAEDDAVSRILIKRSLQEENLTILDAWNGRDAVQMIMQHPEIDLVLMDIKMPVMNGFE 875 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R +L P+L ++ T F + + +SKP + + L+ + LL Sbjct: 876 ASREIKKLRPELPIIAQTAFTSKEERLKALEAGCDSFMSKPINKQKLIELIRLLL 930 >gi|49073866|gb|AAT49361.1| PA0179 [synthetic construct] Length = 122 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ L L AGYEV +G K + + +SL+ TD MP MD Sbjct: 1 MGKPILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSKSYSLVFTDQNMPNMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ L R L + ++ +T ++ A+ + L KPF L+ EV R Sbjct: 61 GLSLIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLL-EVTR 117 >gi|56697471|ref|YP_167839.1| C4-dicarboxylate transport transcriptional regulatory protein [Ruegeria pomeroyi DSS-3] gi|56679208|gb|AAV95874.1| C4-dicarboxylate transport transcriptional regulatory protein [Ruegeria pomeroyi DSS-3] Length = 409 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 58/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL +DD +R L + L A Y V + + +A D + ++++DI MP D Sbjct: 1 MIGKVLLVDDDAAVREALGQTLDLADYAVQTAGSFVAAKDHITATFDGVIVSDIRMPGRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G L A ++DPDL V+ +TG + + + L KP DL+ + R + Sbjct: 61 GFHLLSYAQDIDPDLPVILLTGEGDIPMAVRAMGDGAFDFLEKPCAAADLLAVIARAMAA 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|26251012|ref|NP_757052.1| transport activator [Escherichia coli CFT073] gi|117625221|ref|YP_854268.1| phosphoglycerate activator protein [Escherichia coli APEC O1] gi|218559982|ref|YP_002392895.1| Phosphoglycerate transport system transcriptional regulatory protein [Escherichia coli S88] gi|237706350|ref|ZP_04536831.1| transport activator [Escherichia sp. 3_2_53FAA] gi|26111444|gb|AAN83626.1|AE016771_137 Transport activator [Escherichia coli CFT073] gi|70608365|gb|AAZ04437.1| phosphoglycerate activator [Escherichia coli] gi|115514345|gb|ABJ02420.1| phosphoglycerate activator protein [Escherichia coli APEC O1] gi|218366751|emb|CAR04514.1| Phosphoglycerate transport system transcriptional regulatory protein [Escherichia coli S88] gi|226899390|gb|EEH85649.1| transport activator [Escherichia sp. 3_2_53FAA] Length = 418 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 11 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAWIQPDWPGIVLSDVCMPGCSGIDL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D L ++ ITG V + D+ L KP L LV E R Sbjct: 71 MMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 125 >gi|150017333|ref|YP_001309587.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903798|gb|ABR34631.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD ++R L K GY+ +G A + + +E L+++DI+MP MDG EL Sbjct: 4 ILIVEDDKELRELFSTVLLKNGYKTTGAKDGIEALNVLDKEYIDLIISDIMMPNMDGFEL 63 Query: 65 ARRATELDPDLKVMFITG 82 + + +L ++ IT Sbjct: 64 IKSIRDAQFNLPILMITA 81 >gi|302338224|ref|YP_003803430.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirochaeta smaragdinae DSM 11293] gi|301635409|gb|ADK80836.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirochaeta smaragdinae DSM 11293] Length = 453 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 57/119 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R L K+L G++V G + V E L++TD+ MPEM Sbjct: 1 MQFHILIVDDEKNIREGLGKSLEMDGHKVFLAATGKDGWHIVTTEEVDLVITDLKMPEMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G +L ++ P + V+ +TG + + L+KP L L + V R L+ Sbjct: 61 GSDLLKKIVSSYPTVPVVILTGHGTIESAVSAIQDGAYDFLTKPVDLERLSHIVRRALS 119 >gi|300906135|ref|ZP_07123854.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300923962|ref|ZP_07139970.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300402078|gb|EFJ85616.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300419799|gb|EFK03110.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|315255645|gb|EFU35613.1| response regulator receiver domain protein [Escherichia coli MS 85-1] Length = 418 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 11 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAWIQPDWPGIVLSDVCMPGCSGIDL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D L ++ ITG V + D+ L KP L LV E R Sbjct: 71 MMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 125 >gi|291279152|ref|YP_003495987.1| two-component system, NtrC family, response regulator AtoC [Deferribacter desulfuricans SSM1] gi|290753854|dbj|BAI80231.1| two-component system, NtrC family, response regulator AtoC [Deferribacter desulfuricans SSM1] Length = 430 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 54/105 (51%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 +L DDD R +IK + YEV NG A + +R + + +++ D VM E+DGIE+ Sbjct: 4 ILVVDDDKNSRDIIKLSLENSYEVDVALNGVHALELIRSKSYDVVICDYVMNEIDGIEVL 63 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ ++ + + IT F + + + + LSKPF + L Sbjct: 64 KKLRKIGSNAVFILITAFGSSDIAIKAIQEGAYEYLSKPFKMSKL 108 >gi|269962211|ref|ZP_06176564.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833042|gb|EEZ87148.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 780 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 45/83 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K L+ +D + R L L G E V+ +G A +K+ E ++LTD+ MP M G+E Sbjct: 665 KALVVDDVEFNREILQYHLNLLGIECVTAIDGVDALNKLENEVVDVILTDVSMPNMGGVE 724 Query: 64 LARRATELDPDLKVMFITGFAAV 86 LA R+ + P L ++ +T A V Sbjct: 725 LANRSKNIAPTLPIIAVTARATV 747 >gi|225569966|ref|ZP_03778991.1| hypothetical protein CLOHYLEM_06061 [Clostridium hylemonae DSM 15053] gi|225161436|gb|EEG74055.1| hypothetical protein CLOHYLEM_06061 [Clostridium hylemonae DSM 15053] Length = 119 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI++ +D MR + L K GY ++ ++GA A ++E +L+L DI MP MDG+ Sbjct: 3 KIMVVDDAAFMRMMVKDTLSKGGYTDICEASDGAEALQMYKDEKPALVLMDITMPNMDGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + DP V+ + + ++ + KPF +++ V++++ Sbjct: 63 EALKAIKAFDPGATVVMCSAMGQETMVIEAIKSGAKDFIVKPFKANRILDTVSKII 118 >gi|224535251|ref|ZP_03675790.1| hypothetical protein BACCELL_00112 [Bacteroides cellulosilyticus DSM 14838] gi|224523136|gb|EEF92241.1| hypothetical protein BACCELL_00112 [Bacteroides cellulosilyticus DSM 14838] Length = 981 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ EDD DMR++L + L +EV++ +N S Y+ + +L++TDI+MP M+G+ Sbjct: 732 QIILVIEDDYDMRKYLHQYLSPH-FEVLTEDNAFSGYETALKYIPNLIITDIMMPGMNGL 790 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 EL + L D I A + + K + ++KPF+ L+ +V + Sbjct: 791 ELCNK---LKNDFHTSHIPVIILTAKAAEEDLLKGYQSGAEIYITKPFNPDSLILQVRNM 847 Query: 118 LTIK 121 +++K Sbjct: 848 ISLK 851 >gi|154483342|ref|ZP_02025790.1| hypothetical protein EUBVEN_01045 [Eubacterium ventriosum ATCC 27560] gi|149735852|gb|EDM51738.1| hypothetical protein EUBVEN_01045 [Eubacterium ventriosum ATCC 27560] Length = 509 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ +D+ +R+ L + + Y+ V + NNG A K+ E +++LTD+ MP +DG Sbjct: 8 LLIVDDEAPIRKGLSEYIKWEDYDCKVVATANNGEDAITKINENDINIVLTDVKMPLLDG 67 Query: 62 IELARRATELDPDLKVMFITGFA 84 I LA+ E PD+ V+ ++G++ Sbjct: 68 IGLAKYIHENRPDIAVIILSGYS 90 >gi|89902337|ref|YP_524808.1| response regulator receiver domain-containing protein [Rhodoferax ferrireducens T118] gi|89347074|gb|ABD71277.1| response regulator receiver domain protein [Rhodoferax ferrireducens T118] Length = 229 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 41/84 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q IL+ +DD +R LG+ G V +G REE L+ D+ MP +D Sbjct: 1 MTQTILVIDDDAAVRGSFQLVLGEIGCVVRVAEDGLQGIAMAREERPDLIFLDLKMPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+E RR +DP + +T F+ Sbjct: 61 GVETMRRLLAMDPTFNIYIVTAFS 84 >gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824] gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018] Length = 229 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 40/67 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD ++ + L GYE++ NG A K+ E L++ D+++P++DGIE Sbjct: 3 KILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPDIDGIE 62 Query: 64 LARRATE 70 + R+ E Sbjct: 63 VCRKIRE 69 >gi|26988889|ref|NP_744314.1| response regulator [Pseudomonas putida KT2440] gi|24983698|gb|AAN67778.1|AE016409_4 response regulator [Pseudomonas putida KT2440] gi|313499716|gb|ADR61082.1| Response regulator [Pseudomonas putida BIRD-1] Length = 393 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G+ V+ NG E L++ D+ MP+M G+EL Sbjct: 8 LLIIDDDDVVRASLAAYLEDSGFSVLQAGNGQQGLQVFEEHQPDLVICDLRMPQMGGLEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 R+ +E P L V+ ++G ++ ++ A L KP L L + V R L Sbjct: 68 IRQVSERAPQLPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|325998231|gb|ADZ50439.1| type IIS restriction enzyme R protein [Helicobacter pylori 2017] Length = 961 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L EDD + + + L GYEV NG A++++ E F+LLL D+ +PEM+ +EL Sbjct: 415 FLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAHERLSVERFNLLLLDVQVPEMNSLELF 474 Query: 66 RR-ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +R + V+FIT A ++ + L KPF L +L + R Sbjct: 475 KRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 528 >gi|323951570|gb|EGB47445.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323957494|gb|EGB53213.1| response regulator receiver domain-containing protein [Escherichia coli H263] Length = 415 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 8 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAWIQPDWPGIVLSDVCMPGCSGIDL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D L ++ ITG V + D+ L KP L LV E R Sbjct: 68 MMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 122 >gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 57/108 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L AL G++ + NG A + +RE LL+ DI+MP +DG+E Sbjct: 21 RVLVVDDEANLSDLLRMALQNEGWDARTAANGQEALNVIREFGPDLLVLDIMMPGLDGME 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R D V+F+T AV + ++KPF+L ++V Sbjct: 81 LLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVV 128 >gi|309777924|ref|ZP_07672867.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308914322|gb|EFP60119.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ D+ + + L K GY V +C +G A + + ++ DI+MP+++G E Sbjct: 2 RLLLAEDERDLNELVCRKLKKEGYSVDACYDGQEALEYAAVTEYDGIILDIMMPKVNGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +R V+F+T A+ L DS A L KPF +L + ++ + Sbjct: 62 VLKRLRAEKNMTPVLFLTARDAIEDRVLGLDSGAN---DYLIKPFSFAELTARIRTMIRL 118 >gi|239905634|ref|YP_002952373.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795498|dbj|BAH74487.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 768 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+AEDD + + + + G+ + N+G ++ E F L+L DI MP +DG Sbjct: 643 NLKILIAEDDKVNQLAISSFVKRIGHTALCANDGIETLKLLQSEEFDLILMDIQMPNLDG 702 Query: 62 IELA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E R + E + ++ +T A A LSKP + DL N ++++ Sbjct: 703 VETTIAIRNSNEKFSKIPIIALTAHAMAGDREKFLAHGMNGYLSKPIIIEDLKNTIDKIF 762 Query: 119 T 119 + Sbjct: 763 S 763 >gi|229522810|ref|ZP_04412224.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae TM 11079-80] gi|229340027|gb|EEO05035.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio cholerae TM 11079-80] Length = 450 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVEMFADGTSALAAIEQQNFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + + V+ ITG V + + + KPF L N V + ++ Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120 >gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273] gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273] Length = 226 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED++D++ L+K L Y V C NG A D + + L++ DI++P +D Sbjct: 1 MLMRVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+++ +R + V+ +T A+ L KPF +L+ + L+ Sbjct: 61 GLQVLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 >gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 211 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LLAED +RR L+ L + +E++ NG A V++E ++L D+ MP Sbjct: 1 MKIKLLLAEDHHIVRRGLVFYLKTRDEFEIIGEAENGEEALYFVKKEKPDVVLMDVSMPN 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGI+ +R E D +K++ ++ F+ Sbjct: 61 MDGIQATKRIKEYDETIKILMLSSFS 86 >gi|224368320|ref|YP_002602483.1| sigma-54 dependent DNA-binding response regulator (Fis family protein) [Desulfobacterium autotrophicum HRM2] gi|223691036|gb|ACN14319.1| sigma-54 dependent DNA-binding response regulator (Fis family protein) [Desulfobacterium autotrophicum HRM2] Length = 464 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +L+ +D+ DM L + L + V + + A + E F L+L DI MP M Sbjct: 1 MKGNVLVVDDERDMAMLLKRTLEPELDCTVTTVFSAEMALTVLSRESFDLVLCDIRMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG EL + +L PDL ++ IT F ++ + ++ +SKPF +++ V + L Sbjct: 61 DGFELLDQVGDLFPDLTMVMITAFGSIDVAINAIKQGAYDFISKPFDRDEIIFRVKKAL 119 >gi|167996917|gb|ACA14308.1| two component heavy metal transcriptional regulator [uncultured bacterium] Length = 253 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ + ++ K L +AG+ V G Y + + FS++L D+++P++ G E Sbjct: 2 KVLLVEDEIKLGEYIKKGLTEAGFIVDHHTTGLDGYHALMTDEFSVVLMDVMLPDVSGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L R V+F+T A + S+ K ++ L+KPF +L+ + LL Sbjct: 62 LVRNYRAAGKHTPVLFLT-----AKDDLSDKIKGIEIGGDDYLTKPFAFAELIVRIKSLL 116 >gi|90419635|ref|ZP_01227545.1| nitrogen regulation protein NtrC [Aurantimonas manganoxydans SI85-9A1] gi|90336572|gb|EAS50313.1| nitrogen regulation protein NtrC [Aurantimonas manganoxydans SI85-9A1] Length = 481 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+A+DD +R + +AL +AG+EV +N A+ + + L++TD++MP+ + Sbjct: 1 MSMQILVADDDSAIRTVVSQALMRAGFEVRVTSNIATLWRWIAAGEGDLVITDVLMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + PDL V+ ++ ++ + KPF L +LV V R L+ Sbjct: 61 AFDTLPKIKNSRPDLPVIVMSAQNTFMTAIKASEKGAYDYIPKPFDLTELVAIVRRALS 119 >gi|86157203|ref|YP_463988.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773714|gb|ABC80551.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 122 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 + ILL EDDD +R + + L GY V NG + + + R P L++ D+VMP M+ Sbjct: 3 GRSILLVEDDDAIRESVAECLDAEGYTVAMVENGVAGLEWLHRSAPPDLVVLDLVMPVMN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G + DP L+ + + A + P L+KPF L L+ V R Sbjct: 63 GAQFL-ETLRADPALRDLPVVLMTAALPSEQLPVPVADGYLTKPFELDQLLETVAR 117 >gi|24376190|ref|NP_720234.1| sigma-54 dependent response regulator [Shewanella oneidensis MR-1] gi|24351237|gb|AAN57677.1|AE015903_9 sigma-54 dependent response regulator [Shewanella oneidensis MR-1] Length = 460 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V +++R F LL+ DI +P GIE Sbjct: 17 VLIVDDEPGMRSFLNKALSKK-FALVETAGSIEDAEQLRSRCHFDLLIVDIRLPGRSGIE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E V+F+TG+A + + + + + KPFHL +++ V+R + Sbjct: 76 WSEALDEQGRRSDVIFMTGYADLEVAIKALRAGASDFIMKPFHLEQMMSAVDRCI 130 >gi|118578477|ref|YP_899727.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] gi|118501187|gb|ABK97669.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] Length = 126 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R + L GYEVV+ N A A +K+++ PF L++ DI + +GIE Sbjct: 3 RLLVVDDEANIRILYSEELADEGYEVVTAANTAEAIEKLQQTPFDLVVLDIKLKNENGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ ++ V+ + F+ D +A + K L +L E+ R+L K Sbjct: 63 LLQKLVRERHEMPVILCSAFS--CYKDDFSAWLADGYIVKSGDLTELKQEIARVLAKK 118 >gi|119387835|ref|YP_918869.1| response regulator receiver protein [Paracoccus denitrificans PD1222] gi|119378410|gb|ABL73173.1| response regulator receiver protein [Paracoccus denitrificans PD1222] Length = 121 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+A+D+ ++ L L + GYEV+ +G A +R E L+L D MP M Sbjct: 1 MTDRVLIADDEPNIVVSLSFMLKREGYEVLVAPDGTQALAMIRGERPRLVLLDAAMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G E+ A DP+L + I A + D A ++KPF RDL+ + + Sbjct: 61 GFEVC-EAVRADPELSGIRILMLTAKGRDTDIARGMGAGADAYVTKPFSTRDLIVRIREM 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4] gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5] gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus 273-4] gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 254 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q+IL+ +DD +R L + L G+ V + ++G+ ++ E FSL++ D+++P D Sbjct: 10 LTQRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLPGED 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI + +R E + D+ ++ +T A L KPF+ ++L+ + +L Sbjct: 70 GISICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 129 Query: 121 KN 122 +N Sbjct: 130 QN 131 >gi|332532979|ref|ZP_08408851.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Pseudoalteromonas haloplanktis ANT/505] gi|332037645|gb|EGI74097.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Pseudoalteromonas haloplanktis ANT/505] Length = 122 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR LI L K Y +V +G A +R++ F L++TD+ MP+MDG+ Sbjct: 2 KILVVDDMPLMRHVLINMLRKLEYCNIVEATDGLQALALLRDQHFDLVITDLHMPKMDGV 61 Query: 63 EL---ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L R+ L D+ V+ +T + A K + + KPF++ L +++NR Sbjct: 62 DLLTNIRKDIAL-ADIPVLMVTCEDSTDKVKQVIAAKVSGFIIKPFNMNVLSSQLNRFF 119 >gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 223 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ +L+ L + GY +G + E PF +++ D++MP+MDG E+ Sbjct: 3 ILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVMMPKMDGWEV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + + D V+F+T +A L KPF +LV + L Sbjct: 63 LRRLRK-ETDTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTL 114 >gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1079 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 1 MNQKILLAEDDDD---MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 ++ +IL+ ED+ + R ++K LG V NNG A D + E F L+L D MP Sbjct: 818 LDSRILIVEDNPTNQMVARAVLKKLGLTNSTVA--NNGREALDILARENFDLVLMDCRMP 875 Query: 58 EMDGIELARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 EMDG E RR E +P + ++ +T A + LSKP ++L Sbjct: 876 EMDGFEATRRIREGKNSVQNPQVPIVAMTAHAMKGDREKCIQAGMSDYLSKPVQPQELEE 935 Query: 113 EVNRLL 118 +NR L Sbjct: 936 IINRQL 941 >gi|288931451|ref|YP_003435511.1| response regulator receiver protein [Ferroglobus placidus DSM 10642] gi|288893699|gb|ADC65236.1| response regulator receiver protein [Ferroglobus placidus DSM 10642] Length = 120 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D MR+ L L G+++ NG A + ++ ++ DIVMPEM+GI Sbjct: 3 RVLIVDDAAFMRKLLKNILFTGGFDIAGEAENGKQAVELYKQLKPDIVTMDIVMPEMNGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E + ++DP+ KV+ T + + + KPF ++ E+ R+ Sbjct: 63 EALKEIRKIDPNAKVVMCTAVGQEQMVKTAIKLGAKGYIVKPFQASKVIEELKRV 117 >gi|251771347|gb|EES51928.1| response regulator receiver protein [Leptospirillum ferrodiazotrophum] Length = 126 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED D R + + L + GY V + G + +K+R L+L D+ MP +DG E Sbjct: 4 ILLVEDHDMAREIMQRRLEREGYRVETAQTGKESLEKIRNISPDLVLMDMSMPMIDGWEA 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD 91 RR + DP+LK + + A A+ D Sbjct: 64 TRR-IKADPELKRIPVMALTANAIEGD 89 >gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] Length = 223 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A + EEP ++L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDEEP-NVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|255085834|ref|XP_002505348.1| predicted protein [Micromonas sp. RCC299] gi|226520617|gb|ACO66606.1| predicted protein [Micromonas sp. RCC299] Length = 114 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 45/79 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R L L + V+ ++GA A DK F L++ D+ MP MDG+E Sbjct: 1 RVLLVDDDRLVRMVLAALLRRMDAICVTASDGAEAVDKCASGEFDLVIMDLRMPVMDGLE 60 Query: 64 LARRATELDPDLKVMFITG 82 RR E+D D+ ++ +T Sbjct: 61 ATRRIREMDADVPIVGLTA 79 >gi|220935023|ref|YP_002513922.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996333|gb|ACL72935.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 445 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ L AL G+ + + G +A +R F L++TD+ MP +DG+ Sbjct: 5 RLLLVDDEQIALDNLADALDGQGFLIETAPGGEAAQVAIRRSQFDLVITDLRMPGVDGLA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + A E +PD V+ +TG A V + L+KP+ L +L Sbjct: 65 VLASALEHNPDTLVILLTGHATVDTAVTALRAGAYHYLTKPYRLEEL 111 >gi|149926388|ref|ZP_01914649.1| multi-sensor hybrid histidine kinase [Limnobacter sp. MED105] gi|149824751|gb|EDM83965.1| multi-sensor hybrid histidine kinase [Limnobacter sp. MED105] Length = 134 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MD 60 + ILL EDD +R + L GY+V S +N + + + LL +DIVMP M Sbjct: 16 KHILLVEDDAMVREHVECLLEDLGYKVTSAHNARECLRVISDLDRVDLLFSDIVMPGGMS 75 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LAR ++ P L ++ +G+A ++ + +L KP+ DL + +L Sbjct: 76 GTQLAREIRQMYPGLPILLTSGYAEDVISGLDSIDARLALLRKPYRRTDLCRALQAML 133 >gi|149278618|ref|ZP_01884754.1| two component transcriptional regulator, winged helix family protein [Pedobacter sp. BAL39] gi|149230613|gb|EDM35996.1| two component transcriptional regulator, winged helix family protein [Pedobacter sp. BAL39] Length = 234 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 12/125 (9%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M QK ILL ED+D + + L GY+V + +G +A +EE F+L++ D+++PE Sbjct: 1 MQQKLRILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNE 113 MDG ++ + ++ ++F+T A N + K L KPF+L +L+ Sbjct: 61 MDGFQVCETIRLENTEVPILFLT-----AKNTSEDRVMGLKKGADDYLVKPFNLEELILR 115 Query: 114 VNRLL 118 V L+ Sbjct: 116 VGILV 120 >gi|39996771|ref|NP_952722.1| response regulator/GGDEF domain-containing protein [Geobacter sulfurreducens PCA] gi|39983659|gb|AAR35049.1| response regulator/GGDEF domain protein [Geobacter sulfurreducens PCA] gi|298505784|gb|ADI84507.1| response receiver-modulated diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 322 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 7/120 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L +L AGY+VV NG A + + + +++TD VMPEMDG+EL Sbjct: 18 ILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALEIFNKGYYPIVMTDWVMPEMDGLEL 77 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLTIK 121 RA D + +I + D A A + L KP H +L + RL T K Sbjct: 78 C-RAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYLVKPAHQVEL---LTRLKTAK 133 >gi|28897547|ref|NP_797152.1| chemotaxis CheV [Vibrio parahaemolyticus RIMD 2210633] gi|153839682|ref|ZP_01992349.1| CheV [Vibrio parahaemolyticus AQ3810] gi|260364606|ref|ZP_05777208.1| chemotaxis protein CheV [Vibrio parahaemolyticus K5030] gi|260878289|ref|ZP_05890644.1| chemotaxis protein CheV [Vibrio parahaemolyticus AN-5034] gi|260898119|ref|ZP_05906615.1| protein CheV [Vibrio parahaemolyticus Peru-466] gi|260901948|ref|ZP_05910343.1| chemotaxis protein CheV [Vibrio parahaemolyticus AQ4037] gi|5361003|gb|AAD42910.1|U12817_4 chemotaxis CheV homolog [Vibrio parahaemolyticus] gi|28805759|dbj|BAC59036.1| chemotaxis CheV [Vibrio parahaemolyticus RIMD 2210633] gi|149746792|gb|EDM57780.1| CheV [Vibrio parahaemolyticus AQ3810] gi|308086122|gb|EFO35817.1| protein CheV [Vibrio parahaemolyticus Peru-466] gi|308090149|gb|EFO39844.1| chemotaxis protein CheV [Vibrio parahaemolyticus AN-5034] gi|308106772|gb|EFO44312.1| chemotaxis protein CheV [Vibrio parahaemolyticus AQ4037] gi|308115124|gb|EFO52664.1| chemotaxis protein CheV [Vibrio parahaemolyticus K5030] gi|328473459|gb|EGF44307.1| chemotaxis CheV [Vibrio parahaemolyticus 10329] Length = 308 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EVVS +G AY+K+ E + SL+++DI Sbjct: 182 RRILIADDSTVARKQVERAITSIGFEVVSVKDGKEAYNKLLEMAQEGSIYDQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR +L DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRNADLK-DLYVILHSSLSGV 275 >gi|319952548|ref|YP_004163815.1| two component, sigma54 specific, transcriptional regulator, fis family [Cellulophaga algicola DSM 14237] gi|319421208|gb|ADV48317.1| two component, sigma54 specific, transcriptional regulator, Fis family [Cellulophaga algicola DSM 14237] Length = 439 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 4/112 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +DD ++ L + L Y + + A ++E LL+TDI MPE+D Sbjct: 4 LKENILIVDDDVNILELLQRQLQLLNYHIYKAVSVQQALYILKETEIDLLITDIQMPEVD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAKVLSKPFHLRDL 110 G+EL + A+E P + + ITGF ++ ALN + + L+KPF +L Sbjct: 64 GLELIKYASEHYPKIPKLVITGFPSLDGALNVIKSGATD--YLTKPFTKEEL 113 >gi|317488181|ref|ZP_07946753.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|316912726|gb|EFV34263.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] Length = 713 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 9/122 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEP--FSLLLTDIVMPEMDG 61 ILLAED++ R ++ L G +V + NGA A +KV EP ++L+L DI MP M+G Sbjct: 586 ILLAEDNEMNREIIVDLLSDFGVDVETACNGAEALEKVTSSEPGRYALVLMDIQMPVMNG 645 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 +E A RA+ PD + I +A A D + + LSKP +L D+ + +R Sbjct: 646 LEAASAIRASG-HPDAARLPIIALSAGAFEEDVQRSLHHGMQDHLSKPMNLDDVRDVFHR 704 Query: 117 LL 118 + Sbjct: 705 FI 706 >gi|307128785|ref|YP_003880801.1| nitrogen regulation protein NR(I) [Dickeya dadantii 3937] gi|306526314|gb|ADM96244.1| Nitrogen regulation protein NR(I) [Dickeya dadantii 3937] Length = 470 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + +NG A + + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALTTQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|271502633|ref|YP_003335659.1| two component, sigma54 specific, transcriptional regulator, Fis family [Dickeya dadantii Ech586] gi|270346188|gb|ACZ78953.1| two component, sigma54 specific, transcriptional regulator, Fis family [Dickeya dadantii Ech586] Length = 470 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + +NG A + + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALTTQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|251791713|ref|YP_003006434.1| nitrogen regulation protein NR(I) [Dickeya zeae Ech1591] gi|247540334|gb|ACT08955.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Dickeya zeae Ech1591] Length = 470 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + +NG A + + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALTTQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1135 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 16/126 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++ILLAED ++ + L + G+ VV +NG A ++ R E F L+L D+ MPE+DG Sbjct: 818 SRRILLAEDSLANQKLALGLLERWGHRVVVASNGIEAIERYRSESFDLILMDVQMPELDG 877 Query: 62 -------IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLV 111 E+ RR E P I A AL D A + L KP R L Sbjct: 878 NEATMAIREIERRTGEHIP------IVAMTAHALQGDREQCLKAGMDDYLMKPIRARQLF 931 Query: 112 NEVNRL 117 + ++ Sbjct: 932 QMIEQV 937 >gi|237715219|ref|ZP_04545700.1| rteB [Bacteroides sp. D1] gi|229444528|gb|EEO50319.1| rteB [Bacteroides sp. D1] Length = 214 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 59/113 (52%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ +GI+L Sbjct: 1 MIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQNVDLILSDLRLPDHEGIDLL 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E D+ ++ +TG+A + + ++KP + +L+ +++ L Sbjct: 61 KWMNEQGMDIPLIIMTGYADIQSAVQAMKLGARDYIAKPVNPEELLKKISECL 113 >gi|291087739|ref|ZP_06572087.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] gi|291074166|gb|EFE11530.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] Length = 236 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 46/79 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + + + L +GYE C + +AY+ + + ++L+++DI+MP DG E Sbjct: 16 QILVVDDDIKLTQSVCTCLNDSGYEAKGCLSAEAAYEAMYSKMYNLIISDIMMPGTDGFE 75 Query: 64 LARRATELDPDLKVMFITG 82 A L+ + ++FI+ Sbjct: 76 FAETVRGLNKTIPILFISA 94 >gi|209546371|ref|YP_002278261.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539228|gb|ACI59161.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 642 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 10/116 (8%) Query: 6 LLAEDDDDM----RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++A DDD + +++ LG +E ++ G A + +R++P L++ D MP M G Sbjct: 531 IVAVDDDGLVLMNTTLMLEDLGHTVFEAMA---GPEALEIMRKQPVDLVICDHAMPRMTG 587 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ELA E P++ ++ TG+A + P+ N L KPF L + ++R+ Sbjct: 588 AELAEVIREEWPEMPIILATGYAEL---PEGTQIANLPRLGKPFSQAQLADAISRV 640 >gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262] gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262] gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023] Length = 225 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|89092534|ref|ZP_01165487.1| Hypothetical protein yfHa [Oceanospirillum sp. MED92] gi|89083046|gb|EAR62265.1| Hypothetical protein yfHa [Oceanospirillum sp. MED92] Length = 439 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN ILL +DD + + L L +GY+V ++ A + + ++ F LL+TD+ M MD Sbjct: 1 MNPAILLVDDDSSLLKLLSMRLEASGYKVTCADSAERALELINDQ-FDLLITDLRMEGMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L + L P L V+ IT ++ Sbjct: 60 GMALFNQVQRLYPQLPVVIITAHGSI 85 >gi|320352269|ref|YP_004193608.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfobulbus propionicus DSM 2032] gi|320120771|gb|ADW16317.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfobulbus propionicus DSM 2032] Length = 723 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL +DD + R L + ++GY+V + +G A + + P ++++D +MP M GI Sbjct: 600 KHLLLVDDDPLVVRGLRRVFYRSGYQVHTATSGEEALEIMATIPVQVIISDQLMPGMTGI 659 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFH---LRDLVNEVNR 116 +L R + PD + ++G+A + ++ N + K L KP+ LR +V + R Sbjct: 660 QLLGRVKRIHPDAVRIILSGYAELGTVTEAINHGEVWKYLMKPWSDDLLRQVVQQAFR 717 >gi|331681141|ref|ZP_08381778.1| phosphoglycerate transport system transcriptional regulatory proteinpgtA [Escherichia coli H299] gi|331081362|gb|EGI52523.1| phosphoglycerate transport system transcriptional regulatory proteinpgtA [Escherichia coli H299] Length = 415 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 8 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAWIQPDWPGIVLSDVCMPGCSGIDL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D L ++ ITG V + D+ L KP L LV E R Sbjct: 68 MMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 122 >gi|300816590|ref|ZP_07096811.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300530820|gb|EFK51882.1| response regulator receiver domain protein [Escherichia coli MS 107-1] Length = 418 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 11 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAWIQPDWPGIVLSDVCMPGCSGIDL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D L ++ ITG V + D+ L KP L LV E R Sbjct: 71 MMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 125 >gi|299147304|ref|ZP_07040369.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23] gi|298514582|gb|EFI38466.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23] Length = 1339 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++R ++ K G + ++ NG A ++ ++ L+++DI+MPEMDG+ Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQTFKKAPDLVISDIMMPEMDGLT 1142 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R+ + + +L + + A D+ N +A ++ KPF++ L V L+ Sbjct: 1143 LCRKIKQ-NVNLNHIPVILLTAKTREEDNLEGLNTGADAYIM-KPFNIEILQKTVENLIN 1200 Query: 120 IK 121 + Sbjct: 1201 TR 1202 >gi|291529713|emb|CBK95299.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Eubacterium rectale M104/1] Length = 120 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR L KAG+E+V+ NG A +K E L+ DI MP+ DG+ Sbjct: 3 KILIVDDAAFMRMMLKDIFIKAGHEIVAEAGNGNEAAEKYIEFHPDLVTMDITMPDCDGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + E + + KV+ + A+ D+ + KPF ++ VN +L Sbjct: 63 EGLSKIMEANSNAKVVMCSAMGQQAMVLDAVKRGAKDFIVKPFQAEKVIASVNNVL 118 >gi|257439717|ref|ZP_05615472.1| phosphate regulon transcriptional regulatory protein Phob [Faecalibacterium prausnitzii A2-165] gi|257197857|gb|EEU96141.1| phosphate regulon transcriptional regulatory protein Phob [Faecalibacterium prausnitzii A2-165] Length = 257 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A + +R+ F L+L DI +P+ +G Sbjct: 29 EQILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINLPDGNGF 88 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 89 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 143 Query: 118 LTI 120 + Sbjct: 144 FAM 146 >gi|302545825|ref|ZP_07298167.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302463443|gb|EFL26536.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 245 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ + L L AGY+V + G A D+V E L++ D+++P++DG Sbjct: 16 GQRILVVDDESRIAELLSTTLELAGYQVGTAATGGEALDRVGRERPDLVILDVMLPDLDG 75 Query: 62 IELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + RR D D V+F+T ++ ++KPF + +++ V Sbjct: 76 FTVCRRLVAADEDHPPVLFLTARDSLDSLVTGLGIGGGDYVTKPFRIAEVLARVQ 130 >gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 229 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 14/126 (11%) Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 MN+K IL+ +D+ + F+ AL K +E +NG A + ++ + L + DI++P Sbjct: 1 MNEKPSRILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 MDG EL RR V+F++ V L + LSKPF LR+L+ Sbjct: 61 GMDGYELCRRLRSF-TSAPVLFLSARDTELDKVVGLEIGGD-----DYLSKPFGLRELIA 114 Query: 113 EVNRLL 118 V LL Sbjct: 115 RVRALL 120 >gi|224535984|ref|ZP_03676523.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus DSM 14838] gi|224522398|gb|EEF91503.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus DSM 14838] Length = 1111 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +LL ED++D+ ++K LG Y++ + NG A + V E L+++D++MP MDG Sbjct: 852 SHTLLLVEDNEDLLGLMVKLLG-TDYKIHTATNGKEALEIVESEDIDLIVSDVMMPVMDG 910 Query: 62 IELAR 66 IE R Sbjct: 911 IEFCR 915 >gi|218281490|ref|ZP_03487933.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989] gi|218217412|gb|EEC90950.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989] Length = 717 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 7/122 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ILLAED+D + L G V N+G + KV+E + L+L DI MP MDG Sbjct: 543 KHILLAEDNDLNAEIAMTLLSDYGLIVDHVNDGIACVKKVKENKYDLILMDIQMPNMDGY 602 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 + ++ EL D+ ++ +T A A D + + ++KP + ++ ++R+LT Sbjct: 603 QATQKIRELS-DIPIVAMT---ANAFEEDKQKALSIGMNGHIAKPIDMDKVILTLSRVLT 658 Query: 120 IK 121 K Sbjct: 659 FK 660 >gi|126728700|ref|ZP_01744515.1| probable two-component response regulator protein [Sagittula stellata E-37] gi|126710630|gb|EBA09681.1| probable two-component response regulator protein [Sagittula stellata E-37] Length = 225 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI+LAEDD + +++ L + G+ V +G A + L + D ++P MDG+ Sbjct: 2 KIMLAEDDTKVADYIVAGLSEHGHSVDHVADGRDALSYLLYNDCDLAILDRMLPGMDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + L V+F+T V + A + L+KPFH +LV ++ ++ K Sbjct: 62 VLKALRASKKSLPVLFLTAMGQVDDRVEGLAAGSDDYLTKPFHFSELVARIDAIVRRKT 120 >gi|254251319|ref|ZP_04944637.1| regulatory protein LuxR [Burkholderia dolosa AUO158] gi|124893928|gb|EAY67808.1| regulatory protein LuxR [Burkholderia dolosa AUO158] Length = 454 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD +RR +++L AG++V + +A + E ++++DI +P G++ Sbjct: 9 QVIYIEDDALVRRASVQSLQLAGFDVAGFESAEAAEKAIVAETAGVIVSDIRLPGASGLD 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 69 LLAQCRERVPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFAAERLIETVRRAL 123 >gi|119469680|ref|ZP_01612549.1| DNA-binding response regulator [Alteromonadales bacterium TW-7] gi|119446927|gb|EAW28198.1| DNA-binding response regulator [Alteromonadales bacterium TW-7] Length = 241 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 45/84 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++K+L+ EDD ++ + + L V + A K+ + P+ L+L DI +P+MDG Sbjct: 3 HEKLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAA 85 + L R+ E P V+ +T ++ Sbjct: 63 LSLCRKIKEHYPTTSVILLTALSS 86 >gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 223 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D + V+ +T + ++KPFHL +++ + LL Sbjct: 62 VLEAWRRNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALL 116 >gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 243 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ + R++ L GYEV NG A + F L+L DI++P ++ Sbjct: 1 MGAHILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIMLPGLN 60 Query: 61 GIELARR---ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E+ RR E++P V+ +T AV ++KPF + +L+ + Sbjct: 61 GLEVLRRLNKEQEMNPT-PVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARI 116 >gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 256 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ ++ L L GY V + +GASA ++ L++ DI++P MDG E+ Sbjct: 23 ILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIMLPGMDGFEV 82 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + D D+ ++F+T + + L+KPF R+L V +L Sbjct: 83 CRRIQQ-DFDVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTIL 135 >gi|311112536|ref|YP_003983758.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310944030|gb|ADP40324.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 279 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L+ +D++ ++ + L G+EV S +G +A R+ +L+ DI+MP DG+E Sbjct: 56 RALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPAALAIARDWRPDVLVLDIMMPGFDGLE 115 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + P++ +F+T +V + A ++KPF + +++ ++RL+ Sbjct: 116 LLDRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLV 170 >gi|229825554|ref|ZP_04451623.1| hypothetical protein GCWU000182_00914 [Abiotrophia defectiva ATCC 49176] gi|229790117|gb|EEP26231.1| hypothetical protein GCWU000182_00914 [Abiotrophia defectiva ATCC 49176] Length = 119 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN-NGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D MR L L K GYEVV NG ++K +E ++ DI MPE Sbjct: 1 MAKRVLVVDDAAFMRMMLKDILSKNGYEVVGEGVNGNDGFEKYKELKPDIVTLDITMPEC 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 DG++ ++ E D V+ + A+ +S + KPF Sbjct: 61 DGLQCLKKIKEFDAAANVVMCSAMGQQAMVIESIQSGAKDFIVKPFQ 107 >gi|237729582|ref|ZP_04560063.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp. 30_2] gi|226908188|gb|EEH94106.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp. 30_2] Length = 1080 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ R L + L GY V +G A K+ ++ + LL+TD+ MP+ DG +L Sbjct: 846 ILIADDNPTNRLLLKRQLNAIGYSVDEACDGEEAEAKLAKKSYDLLITDVNMPKKDGFDL 905 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLLT 119 A P+L++ +T +A+ + D + L KP ++ L +E++++ T Sbjct: 906 AASLRRQQPNLQIWGLTA-SALPQSRDRCLQNGMNLCLFKPVSIQTLTHELSKIET 960 >gi|163744168|ref|ZP_02151528.1| two component sensor kinase/response regulator hybrid [Oceanibulbus indolifex HEL-45] gi|161380986|gb|EDQ05395.1| two component sensor kinase/response regulator hybrid [Oceanibulbus indolifex HEL-45] Length = 820 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGI 62 IL+ EDD +R + L GY V++ N SA V+ +LL TD+VMP ++ Sbjct: 562 ILVVEDDAAVRETAVDLLRDLGYAVLTAENADSALAIVKSGVKINLLFTDVVMPGKIRSP 621 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELAR P++ V+F +G+ A+ +LSKP+ L +++ +L+ Sbjct: 622 ELARETKAQLPNVGVLFTSGYTQNAIVHAGRLDDGVDLLSKPYTRERLALKIHEILS 678 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 44/79 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD + L GY V + A+A + +E F ++ TD+ +P+ G++ Sbjct: 702 KVLLVEDDALISMATADMLSDLGYAVTEADCVAAAERCLAQERFDIMFTDLGLPDGSGMD 761 Query: 64 LARRATELDPDLKVMFITG 82 L ++ T+L P++ V+ +G Sbjct: 762 LVQQVTQLRPEIAVIIASG 780 >gi|158338729|ref|YP_001519906.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158308970|gb|ABW30587.1| diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 333 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D R L L + GYEV+ NG A V + L+L DI MPEMDG Sbjct: 35 KILLVDDQPQNLRLLTDVLEEQGYEVLQALNGNVALQAVSLDQPQLILLDIQMPEMDGYT 94 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + ++ + DP D+ V+F++ + + ++KPF + +++ V L I Sbjct: 95 VCQK-LKADPSTQDIPVVFVSALDESWDKVKAFSVGGVDYITKPFKVVEVLARVQNQLKI 153 Query: 121 KN 122 + Sbjct: 154 QQ 155 >gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 228 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ D+ + L GY+V + NG K +++ L++ D++MP MDGIE Sbjct: 7 KILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKKPDLIILDVMMPVMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + ++ P+L IT A + A +A ++KP R LV++V LL Sbjct: 67 ACEQIRKI-PELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKVKSLL 123 >gi|86159889|ref|YP_466674.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776400|gb|ABC83237.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 489 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 55/102 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + R + L + G+EVV ++ +A ++ +E F + L DI MP++ G+E Sbjct: 11 RVLVVDDEPTLLRAMEALLRRKGHEVVGLDSSIAATQRLAQEDFDVALFDIKMPQLSGLE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L P+++V+ +TG A V + L+KPF Sbjct: 71 LLNAVKHRRPEVEVIMMTGHATVETALAAVRAGAYDYLTKPF 112 >gi|90020956|ref|YP_526783.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89950556|gb|ABD80571.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 209 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 13/130 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVRE--EPFSLLLTDIVMPE 58 N +IL+AED+ + ++ L AG+ ++ + +G +A+DK++ EP+ ++L D MPE Sbjct: 77 NARILVAEDNSEACELVVGILTDAGFRLLDTAEDGIAAFDKIKSAAEPYDVILCDWDMPE 136 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVN 112 + GI++ +A + + F V N ++++ + A + KP + LVN Sbjct: 137 LSGIDIHSKAKASN----TLRGAHFVMVTANSEASSIRKAIQQGINDYIVKPINAEVLVN 192 Query: 113 EVNRLLTIKN 122 ++N L I+ Sbjct: 193 KINVALNIET 202 >gi|77359088|ref|YP_338663.1| hypothetical protein PSHAa0111 [Pseudoalteromonas haloplanktis TAC125] gi|76873999|emb|CAI85220.1| putative membrane bound sensor or esterase [Pseudoalteromonas haloplanktis TAC125] Length = 942 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ K+LLAED DD RR + + L G +V++ NG A ++ +E +L DI MP MD Sbjct: 722 LSAKVLLAEDHDDNRRLISRYLRAMGLDVIAVENGEQAVEQCLKEYPDFVLLDIQMPIMD 781 Query: 61 GI---ELARRATELDP 73 GI EL R+ P Sbjct: 782 GITAFELLRQCGYEQP 797 >gi|332701876|ref|ZP_08421964.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] gi|332552025|gb|EGJ49069.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] Length = 128 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 54/111 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ D R+ IK +V +G A + + + +++ D+ MP MDGIE Sbjct: 5 KVLIVDDEHDFRQLFIKRFTLRNLDVDGVGSGREALKALDRKEYDVVVLDVRMPGMDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + + P +V+ +TG +V + + + KPF + DL+ + Sbjct: 65 TLKEIKKHHPSSEVIMLTGHGSVKSGIEGMSHGAFDYVLKPFKIDDLLERI 115 >gi|332305657|ref|YP_004433508.1| two component, sigma54 specific, transcriptional regulator, Fis family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172986|gb|AEE22240.1| two component, sigma54 specific, transcriptional regulator, Fis family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 447 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R L+ L GY+V+ + + +E L+++DI M EM G+ L Sbjct: 6 ILIVEDDAGLREALVDTLLLGGYKVLEADCAERGLMMMNQESIDLVVSDIQMGEMSGLSL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R P++ V+ +T +A + + +SKPF L+N V R Sbjct: 66 LRSLKNKYPNVPVLLMTAYATIDDAVSAMRDGATDYMSKPFAPEVLLNLVGR 117 >gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1] gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1] Length = 1044 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D++ R+ L K GYE + NG A D V E+ + L+L D MP MDG Sbjct: 918 SKRLLVVDDNEVNRKVACGFLRKLGYEADTAENGQEALDAVLEKDYGLILMDCQMPVMDG 977 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSN 93 E R+ L P K + I A A+ D + Sbjct: 978 YEATRQIKAL-PKGKYLPIIAVTANAMEGDRD 1008 >gi|289450567|ref|YP_003474627.1| response regulator receiver domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185114|gb|ADC91539.1| response regulator receiver domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 246 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++L+ ED+ +RR ++ + V NG + EP ++LTDI MP MD Sbjct: 3 RVLVVEDETLVRRGIVNGIDWLSLGCVIQAEAKNGVEGLAAFQREPADIVLTDIQMPLMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G+ +A + E+D ++ ++ +T ++ + + L KPFH Sbjct: 63 GLTMAEKIREIDSEVAIIILTAYSEFNYARKALLVRAVDYLLKPFH 108 >gi|237719712|ref|ZP_04550193.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229450981|gb|EEO56772.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1379 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ ED++++ + ++K L + Y V NG + E L+++D++MPEMDGI Sbjct: 1126 HSILVVEDNEELLQLMVKLLSRE-YNVFKAENGKEGVTILENEDIDLIVSDVMMPEMDGI 1184 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 E + + +L++ I A N + + + +V ++KPF+L L + L Sbjct: 1185 EFCKY---VKGNLEISHIPVILLTAKNKEEDRAEAYEVGADAFIAKPFNLAVLHARIRNL 1241 Query: 118 LTIK 121 L K Sbjct: 1242 LKYK 1245 >gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD ++ L LG+AGY V + G S ++RE L++ D+ +P++DG Sbjct: 2 KRILLIEDDPEIAHLLQLELGEAGYTVDWASGGMSGLVRLREATPDLVILDLGLPDLDGG 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ARR ++ ++ +T AV + + KPFH +L+ + Sbjct: 62 EVARR-IRAGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARIQ 113 >gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] Length = 273 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 28 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 87 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 88 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 141 >gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 225 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ +G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|167568893|ref|ZP_02361767.1| response regulator/HD domain protein [Burkholderia oklahomensis C6786] Length = 469 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV+ +GA+A D + L+++D+ MP M G E Sbjct: 33 ILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAAGEVDLIVSDMRMPGMTGAEF 92 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 93 LARAQTRHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVKQAL 147 >gi|158340438|ref|YP_001521794.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158310679|gb|ABW32293.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 914 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 42/69 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D D R L+ L G+E+V G A ++++PF L++TD+ MP MDG Sbjct: 705 RRVLVVDDRWDNRSVLVSLLQPIGFEIVEAEEGQQALAVLQQQPFHLMITDLAMPVMDGF 764 Query: 63 ELARRATEL 71 EL R+ +L Sbjct: 765 ELLRQVQQL 773 >gi|153809029|ref|ZP_01961697.1| hypothetical protein BACCAC_03333 [Bacteroides caccae ATCC 43185] gi|149128362|gb|EDM19581.1| hypothetical protein BACCAC_03333 [Bacteroides caccae ATCC 43185] Length = 456 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 47/82 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G+EV S +N A A + + L+L+D+ +P+ +GI+L Sbjct: 4 ILIVEDDITFGMMLKTWLGKKGFEVSSVSNIARARKHIESQTVDLVLSDLRLPDYEGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + + D+ ++ +TG+A + Sbjct: 64 LKWMNDRGLDIPLIIMTGYADI 85 >gi|157961187|ref|YP_001501221.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846187|gb|ABV86686.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella pealeana ATCC 700345] Length = 450 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ V + A ++ + ++++D+ M + GI Sbjct: 5 KLLLVEDDASLREALLDTLMLAHYDCVDVASAEEAILSLKANRYDMVISDVQMEGVGGIG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 L + P + V+ +T +A + + NA K V L+KPF L+N+V+R L K Sbjct: 65 LLNYMQQHHPKIPVLLMTAYATI--DNAVNAMKLGAVDYLAKPFSSEVLLNQVSRYLPAK 122 >gi|110643129|ref|YP_670859.1| transport activator [Escherichia coli 536] gi|47154966|emb|CAE85165.1| PgtA protein [Escherichia coli] gi|110344721|gb|ABG70958.1| hypothetical transport activator [Escherichia coli 536] Length = 418 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 11 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAWIQPDWPGIVLSDVCMPGCSGIDL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D L ++ ITG V + D+ L KP L LV E R Sbjct: 71 MMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 125 >gi|78355431|ref|YP_386880.1| response regulator receiver domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217836|gb|ABB37185.1| response regulator receiver domain protein (CheY-like) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 126 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N ++L+ +D MRR + L + G+ VV ++G +A+D + ++ +++D MP+M Sbjct: 6 NMRVLVVDDFSTMRRIIKNILRQLGFNNVVEADDGTTAWDVLNKDKIDFIISDWNMPQMT 65 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L R R++E DL + +T A ++ K + + KPF + +++++ Sbjct: 66 GIDLLRKVRSSEEFADLPFLMVTAEAQQENIIEAVQAKVSNYIVKPFTAETMKQKIDKIF 125 >gi|24379372|ref|NP_721327.1| putative response regulator [Streptococcus mutans UA159] gi|290580626|ref|YP_003485018.1| putative response regulator [Streptococcus mutans NN2025] gi|24377300|gb|AAN58633.1|AE014933_7 putative response regulator [Streptococcus mutans UA159] gi|254997525|dbj|BAH88126.1| putative response regulator [Streptococcus mutans NN2025] Length = 228 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 52/117 (44%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILLAED++ + R AL GY+V NG A +K E + + + DI+MP Sbjct: 1 MSLTILLAEDEEQLSRVYTAALKHQGYQVDQVYNGQDAIEKAHENAYDVFILDIMMPIKT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E R + +T + + L+KP L++L+ + L Sbjct: 61 GLEALREIRASGDHTHAIMLTAMSEIEDKVTGLEAGADDYLTKPISLKELLARLASL 117 >gi|121998005|ref|YP_001002792.1| nitrogen metabolism transcriptional regulator NtrC [Halorhodospira halophila SL1] gi|121589410|gb|ABM61990.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Halorhodospira halophila SL1] Length = 471 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++ + +DD +R L KAL ++G+ V + +G +A + +R E +L+TD+ MP + G + Sbjct: 7 QVWVVDDDRSIRWVLEKALRRSGHGVRTFESGDAALEALRREEPDVLITDLRMPGLGGHD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ P L V+ IT ++ + S + L KPF + + V+ R + Sbjct: 67 LLQQVQASTPQLPVIVITAYSDLDAAVSSYEGGAFEYLPKPFDVDEAVDLAGRAI 121 >gi|298206949|ref|YP_003715128.1| transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] gi|83849583|gb|EAP87451.1| transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] Length = 226 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ILL +D+ D+ + L GY V++ ++G A ++ L++ D++MPEMDG Sbjct: 5 NITILLVDDEPDILEIVGYNLSSEGYNVITASDGKEAVKLAKKRKPQLIILDVMMPEMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +E + ++ PDL + IT F A + A +A ++KP + LV++VN LL Sbjct: 65 VEACEQIRKI-PDLDTI-ITFFTARGEDYSMLAGFDAGADDYITKPIKPKVLVSKVNALL 122 >gi|148545543|ref|YP_001265645.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148509601|gb|ABQ76461.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 239 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ +DDD++R L L AGY V++ +G D++ L++ D+++P D Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYSVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L Sbjct: 61 GLSLCRQ-LQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 >gi|332703162|ref|ZP_08423250.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 657 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ + + L + G+ + NG +A + +R+E F L+L D MP MDG E Sbjct: 531 KVLIAEDNSINQILATEILKEKGHSMFVVENGQAALEALRKEKFDLVLMDAKMPVMDGEE 590 Query: 64 LAR--RATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R RA E DPD+ ++ +T +A A +SKP +++L Sbjct: 591 ATRRIRAGEAGDPDVPIVALTAYALKGDRERFLAAGMDDYISKPIDMQEL 640 >gi|327480298|gb|AEA83608.1| sensor/response regulator hybrid [Pseudomonas stutzeri DSM 4166] Length = 763 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 ++ +L+ +DD + L G +V + N+ +A + + + +L+TD +MP M Sbjct: 634 LSLSVLVVDDDPLVLDNTASMLEDLGCQVTAVNSAETALGLLTQRVAYDILITDHMMPGM 693 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G +LA R P+L V+ ++G+A +A ++P+ +VL+KPF + L++ + + Sbjct: 694 TGAQLADRLRNERPELPVLVVSGYADLA-----DSPRQLQVLAKPFTQQTLLDAIQQ 745 >gi|317478013|ref|ZP_07937195.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316905802|gb|EFV27574.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1317 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED +M+ F++K L + Y V++ NG A ++E +L+++DI+MPEMDG+EL Sbjct: 1073 LLVVEDSLEMQAFVVKQL-SSEYRVLTAVNGVEALKVLKEHTVNLVISDIMMPEMDGLEL 1131 Query: 65 ARR-ATELD 72 +ELD Sbjct: 1132 CEHLKSELD 1140 >gi|258648005|ref|ZP_05735474.1| DNA-binding response regulator RprY [Prevotella tannerae ATCC 51259] gi|260851850|gb|EEX71719.1| DNA-binding response regulator RprY [Prevotella tannerae ATCC 51259] Length = 232 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+++ L + L GYE C +G + Y F + + D++MP DG Sbjct: 6 RILLCEDDENLGMLLREYLQAKGYETELCPDGDAGYKAFISGKFDICVLDVMMPRKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + + ++ ++F+T + L+KPF + +L + +L Sbjct: 66 LGKEIRQSNEEIPIIFLTAKTMKEDVQEGFKIGADDYLTKPFSMEELTLRIEAIL 120 >gi|288941472|ref|YP_003443712.1| histidine kinase [Allochromatium vinosum DSM 180] gi|288896844|gb|ADC62680.1| histidine kinase [Allochromatium vinosum DSM 180] Length = 547 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ + K L G +NG A + R+ + ++L D+ MPE+DGIE Sbjct: 422 RVLIAEDNPGNLILMRKLLQSMGVSADFAHNGLEAVEAARQVAYDVILMDVQMPELDGIE 481 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 RR PD + + I A A D A A + ++KP ++ L Sbjct: 482 ATRRIRRFQPDRQPLQIVALTANATEEDRLACFEAGMNGFITKPVRMQRL 531 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIEL 64 LL DD+D R +I+ +E++ +G A + E ++L D++MP +DG E+ Sbjct: 7 LLVVDDEDSIRAVIRTRFSDEFEILEAADGTDALVTLESETGIEIVLLDVMMPGLDGFEV 66 Query: 65 ARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +P L +V+ ++ A V + A ++KPF L +L Sbjct: 67 L-DILQSNPQLATCRVIMLSARADVDSKVRALAAGAVDFINKPFDLIEL 114 >gi|217077518|ref|YP_002335236.1| CheA signal transduction histidine kinase, putative [Thermosipho africanus TCF52B] gi|217037373|gb|ACJ75895.1| CheA signal transduction histidine kinase, putative [Thermosipho africanus TCF52B] Length = 587 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 48/82 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL +D R + K L GY+VV+ +G +K +++ F L+++D+ MP +DG Sbjct: 472 KKILLIDDSIVTRNVVSKFLENRGYQVVTAKDGYDGIEKFKKQEFDLVISDVEMPGIDGF 531 Query: 63 ELARRATELDPDLKVMFITGFA 84 E ++ E++ ++ V+ + + Sbjct: 532 ETTKKIKEINDNVPVIIFSTLS 553 >gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW] gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW] Length = 878 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED + + L KAG+ V NG A V PF L+L D+ MP + G+E Sbjct: 633 RILLAEDVKANQALAVALLTKAGHRVTVVANGLDAVQAVAATPFDLVLMDVRMPRLGGLE 692 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 RR L + + A A + A A +VL+KP L++ + RL Sbjct: 693 ATRRIRALGGPRGAIPVVALTAEAGAREQAACLEAGMDEVLTKPLQPALLLDAIARL 749 >gi|194290021|ref|YP_002005928.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424] gi|193223856|emb|CAQ69865.1| Putative response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 58/107 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + L +AL +AG+ V ++G SA + + ++LL+ D+ +P MDG+E Sbjct: 2 RILLAEDNVMLASSLSQALDQAGFTVDCMHDGHSADTLLSTQDYALLILDLGLPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RR + L V+ +T +V L+KPF L +L Sbjct: 62 VLRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSEL 108 >gi|126178188|ref|YP_001046153.1| response regulator receiver sensor signal transduction histidine kinase [Methanoculleus marisnigri JR1] gi|125860982|gb|ABN56171.1| response regulator receiver sensor signal transduction histidine kinase [Methanoculleus marisnigri JR1] Length = 440 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED F+ L GY+V +G A ++ + ++LTDI+MP MDG EL Sbjct: 13 VLVVEDSRTQAEFIRHVLETEGYDVTLVADGNEAIRRMEVDMPDIVLTDIMMPGMDGYEL 72 Query: 65 ARRATELDPDLKVMFIT 81 RR + +PD V+ +T Sbjct: 73 CRRIKQQNPDTPVILVT 89 >gi|229588759|ref|YP_002870878.1| putative chemotaxis-related two-component system, sensor kinase [Pseudomonas fluorescens SBW25] gi|29612000|gb|AAO92337.1| WspE [Pseudomonas fluorescens] gi|229360625|emb|CAY47482.1| putative chemotaxis-related two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 755 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GYEV +G ++ +R E F LL+TDI MP MDGI Sbjct: 632 KRVLVVDDSLTVRELQRKLLLNRGYEVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDGI 691 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR + L L VM ++ Sbjct: 692 ELVTLLRRDSRLQ-SLPVMVVS 712 >gi|15595377|ref|NP_248869.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107099168|ref|ZP_01363086.1| hypothetical protein PaerPA_01000178 [Pseudomonas aeruginosa PACS2] gi|116053900|ref|YP_788337.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218888924|ref|YP_002437788.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254237583|ref|ZP_04930906.1| hypothetical protein PACG_03664 [Pseudomonas aeruginosa C3719] gi|254243288|ref|ZP_04936610.1| hypothetical protein PA2G_04096 [Pseudomonas aeruginosa 2192] gi|296386666|ref|ZP_06876165.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313112246|ref|ZP_07798019.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9946012|gb|AAG03569.1|AE004455_10 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115589121|gb|ABJ15136.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169514|gb|EAZ55025.1| hypothetical protein PACG_03664 [Pseudomonas aeruginosa C3719] gi|126196666|gb|EAZ60729.1| hypothetical protein PA2G_04096 [Pseudomonas aeruginosa 2192] gi|218769147|emb|CAW24907.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310884521|gb|EFQ43115.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 121 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ L L AGYEV +G K + + +SL+ TD MP MD Sbjct: 1 MGKPILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSKSYSLVFTDQNMPNMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ L R L + ++ +T ++ A+ + L KPF L+ EV R Sbjct: 61 GLSLIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLL-EVTR 117 >gi|307823059|ref|ZP_07653289.1| response regulator receiver protein [Methylobacter tundripaludum SV96] gi|307735834|gb|EFO06681.1| response regulator receiver protein [Methylobacter tundripaludum SV96] Length = 153 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ R L++ L + + V ++G R+ +L++TDI+MP MDGIE Sbjct: 34 RILVIEDDEQFREMLVQMLTQDAHRVTVAHDGEEGLRLSRQVRPNLIITDILMPRMDGIE 93 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 D ++ I+G + N +S K L+KPF DL + + L Sbjct: 94 TIMELARQGGDTPIIAISGGRRSISAEFNLESATLMGVKATLAKPFTRADLRQAIEQAL 152 >gi|322435172|ref|YP_004217384.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidobacterium sp. MP5ACTX9] gi|321162899|gb|ADW68604.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidobacterium sp. MP5ACTX9] Length = 467 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ ED+ R L + + GY +GA D V ++++TD+ MP MD Sbjct: 1 MQEKVLIVEDEIHARTGLAELVASWGYRTECAADGAEGLDMVTRWSPAIVVTDLKMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+EL R +E ++V+ +T ++ Sbjct: 61 GMELLNRISERPERIRVVMLTAQGSI 86 >gi|299738007|ref|XP_001841526.2| atypical/HisK protein kinase [Coprinopsis cinerea okayama7#130] gi|298403103|gb|EAU80294.2| atypical/HisK protein kinase [Coprinopsis cinerea okayama7#130] Length = 784 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-----VREEPFSLLLTDIVMPEM 59 ILLAED+ ++ +K L K G+ V NG+ A D + +PF ++L D+ MP M Sbjct: 633 ILLAEDNLVNQKLAVKILEKYGHSVEIAENGSLAVDAFKARVAQNKPFDIILMDVSMPFM 692 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E R+ E+ L I A A+ D A + ++KP DL+N + Sbjct: 693 GGMEATELIRSYEMHKGLTATPIIALTAHAMIGDRERCLQAGMDDHITKPLRRGDLLNAI 752 Query: 115 NRL 117 N+L Sbjct: 753 NKL 755 >gi|260892434|ref|YP_003238531.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ammonifex degensii KC4] gi|260864575|gb|ACX51681.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ammonifex degensii KC4] Length = 470 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 M + +L+ +D+ + L L ++GY VV+ +G A +KV P ++LL DI MPEM Sbjct: 1 MAKLVLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLL-DIRMPEM 59 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI++ + E P + V+ +T ++ ++ + + KP +L +L++ + + T Sbjct: 60 DGIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATT 119 Query: 120 I 120 + Sbjct: 120 V 120 >gi|237725907|ref|ZP_04556388.1| exonuclease RexB [Bacteroides sp. D4] gi|229435715|gb|EEO45792.1| exonuclease RexB [Bacteroides dorei 5_1_36/D4] Length = 233 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD + + L GYEV++ +NG +E+ ++++DI MP MDG Sbjct: 3 KLLLVEDDTNFCYIIRGGLEDMIGGYEVMTASNGEEGLRIWKEQHPDIIISDIEMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ RR E D + ++F +G + + KPF +L + LL +K Sbjct: 63 YEMVRRIRETDGFIPIVFTSGRVSPKDVVKGYELGVNNYIKKPFLAEELDAHIGALLKMK 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 215 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E+V NG A VR E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEALTFVRTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRIKQYDDTIKILILSSFS 86 >gi|225851025|ref|YP_002731259.1| transcriptional regulatory protein ZraR [Persephonella marina EX-H1] gi|225645834|gb|ACO04020.1| transcriptional regulatory protein ZraR [Persephonella marina EX-H1] Length = 442 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +DD D+ + L GY + + ++ A +++++E F L+L D +MPE+ Sbjct: 1 MVKRILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+E R E D V+ +T + ++ Sbjct: 61 GLEFIDRLKERDIKTPVILMTAYGSL 86 >gi|224368555|ref|YP_002602718.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223691271|gb|ACN14554.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 763 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL +D++ + K L K GY V + A +E P F L++TD+ MP M Sbjct: 642 ERILFIDDEESVAMMGQKILQKYGYHVSIYKDSIQALKAFKESPEAFDLVVTDMAMPGMT 701 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LAR D+ V+ TGF+ + + L KPF + + V ++L Sbjct: 702 GDILARHLKACKKDIPVILCTGFSEKISQGTYHESDIDEFLMKPFSIAKFIGTVRKIL 759 >gi|193216056|ref|YP_001997255.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] gi|193089533|gb|ACF14808.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] Length = 395 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D+ + ++K L + Y NG A + + P+ L++TDI MP M+G Sbjct: 13 RRVLVVDDEQSIAMGILKMLHQNNLYSASHAPNGEKALEFLSNAPYDLVITDIRMPGMNG 72 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 I+L + P++ V+ +T + + + +++ + + KPF L L + + + K Sbjct: 73 IDLLKHVRSHYPNIGVIIMTAYGSPEVQDEASRRGSLSYIEKPFDLSKLQSIIEDFFSKK 132 Query: 122 N 122 N Sbjct: 133 N 133 >gi|167561378|ref|ZP_02354294.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia oklahomensis EO147] gi|167568607|ref|ZP_02361481.1| C4-dicarboxylate transport transcriptional response regulator DctD [Burkholderia oklahomensis C6786] Length = 451 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD+ +RR +++L AG++VV + +A + + ++++DI +P G++ Sbjct: 6 QVIYIEDDELVRRASVQSLQLAGFDVVGFGSVEAAEKAIVGDAAGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L V R L Sbjct: 66 LLAQCRERTPDVPVVLVTGHGDISMAVQAMRDGAYDFIEKPFAAERLTETVRRAL 120 >gi|160890002|ref|ZP_02071005.1| hypothetical protein BACUNI_02436 [Bacteroides uniformis ATCC 8492] gi|156860390|gb|EDO53821.1| hypothetical protein BACUNI_02436 [Bacteroides uniformis ATCC 8492] Length = 475 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD L LGK G++V S ++ A A + E L+L+D+ +P+ DGI+L Sbjct: 4 ILIVEDDITYGMMLKTWLGKKGFQVTSASSIARAQKHIESETVDLILSDLRLPDKDGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + ++ +TG+A + + ++KP + +L+ ++ L Sbjct: 64 LKWLGEHGLQIPLIIMTGYADIQSAVQAMKLGACDYIAKPVNPDELLKKIGEAL 117 >gi|327460409|gb|EGF06746.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] Length = 244 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF----- 83 + NG A+ K + P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 31 IAQAENGREAWQKFQGNPADILLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGYDDFDY 90 Query: 84 --AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A+ L D L KPF D+ + +L T Sbjct: 91 ARTAIKLGADD-------YLLKPFSKDDVEEMLAKLQT 121 >gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 244 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ IL+ +D++ M RF+ L G++V+S G A +KVR E L+L D+++P++DG Sbjct: 7 NRSILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVMLPDLDG 66 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ + E + V+ +T + L D ++KPF R+LV+ V Sbjct: 67 FEVLKLIRE-SSNTPVIMLTAKGEEDDRVRGLELGADD-------YITKPFSPRELVSRV 118 Query: 115 NRLL 118 +L Sbjct: 119 KAVL 122 >gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3] gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3] Length = 228 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++++ F+ L GYE +G + D + F ++L D+++PE++GIE Sbjct: 3 RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLDAALSQDFDVILLDLMLPELNGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR EL D ++ +T +V + KPF + +L+ V LL Sbjct: 63 VARRVREL-KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALL 116 >gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A + L++ D+ +P MDG+E Sbjct: 28 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 87 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 88 VARRLRSEGHTVPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 142 >gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1012 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 39/68 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD + F+ L K G+ V+ NNG A D +E+ F +L DI MP M G+E Sbjct: 830 ILLAEDDRLNQLFMKTMLEKQGHNVLLANNGQEAVDLFQEQNFDCILMDIQMPVMTGVEA 889 Query: 65 ARRATELD 72 +R ++ Sbjct: 890 TQRIRSME 897 >gi|221105902|ref|XP_002159225.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 232 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL EDD + L L +EV NG ++K +++ + L + D++MP DG Sbjct: 4 KKILLVEDDPNFGSVLRDYLSLNDFEVTLAKNGMEGFEKFKKDTYDLCILDVMMPYKDGY 63 Query: 63 ELARRATELDPDLKVMFITG 82 LAR E + ++ ++F+T Sbjct: 64 TLAREIREKNAEVPIIFLTA 83 >gi|218780361|ref|YP_002431679.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761745|gb|ACL04211.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1357 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++ILL +D++ + + + + + GY V +C + A P F L+L+D+ MP M Sbjct: 1232 HERILLVDDEEAVAKLEKQMIERLGYHVTACTSSTEALRVFEANPHAFDLVLSDMTMPGM 1291 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 G L+ + + PD+ V+ TGF+ ++ A +L KP Sbjct: 1292 TGDLLSIKMRSIRPDMPVIICTGFSEKINEENAKAAGIKGLLMKP 1336 >gi|163868612|ref|YP_001609821.1| two-component system response regulator [Bartonella tribocorum CIP 105476] gi|161018268|emb|CAK01826.1| two-component system response regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++K+++ ED++ +M+ F L++A +GYE V NG A D R SL+L DI +P Sbjct: 1 MSKKVMIVEDNELNMKLFRDLVEA---SGYETVETRNGLMALDLARSTMPSLILVDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEV 114 E+ GI++ ++ E D +L+ + + A A+ D A + +SKP + + V Sbjct: 58 EVSGIDVIKQLKE-DEELRSIPVVAVTAFAMKGDEERIRASGCEEYMSKPISVPHFITMV 116 Query: 115 NRLL 118 + Sbjct: 117 KHFV 120 >gi|110635897|ref|YP_676105.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286881|gb|ABG64940.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 233 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +GASA + + P SL + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLSSRPPSLAILDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KTDLPVIFLTSKDDEIDELFGLKMGADD-------FVRKPFSQRLLVERVRAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|20088915|ref|NP_614990.1| chemotaxis response regulator [Methanosarcina acetivorans C2A] gi|19913759|gb|AAM03470.1| chemotaxis response regulator [Methanosarcina acetivorans C2A] Length = 131 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++++ +D + MR + L K G+EVV+ +G A E L+L DI+MP+MDG Sbjct: 13 RVMIVDDAEFMRMVIRDILLKHGHEVVAEVGDGEEAIQTYLEVKPDLVLMDIIMPDMDGK 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E ++ +DPD KV+ + AL +S + KPF +++ + ++ Sbjct: 73 EALQKLLLIDPDAKVVMCSSLGQQALITESMKIGAMGFIIKPFEPDGMLDVIKKI 127 >gi|87307387|ref|ZP_01089532.1| response regulator of hydrogenase 3 activity (sensor HydH) [Blastopirellula marina DSM 3645] gi|87290127|gb|EAQ82016.1| response regulator of hydrogenase 3 activity (sensor HydH) [Blastopirellula marina DSM 3645] Length = 466 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ R+ ++ L G+ +C++ A ++ + ++TD+ MP MDG+EL Sbjct: 13 VLVVDDNARARQSIVDVLEMLGHRGAACSSAHEALKRMETIDYDAVVTDLQMPGMDGLEL 72 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ D + ++ +T +V+ ++ A L KP + L VNR+L Sbjct: 73 VRQIRRRDAHIPIVMVTAHGSVSTAVEAMRFGAADYLEKPLNADRLEAVVNRVL 126 >gi|320354956|ref|YP_004196295.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320123458|gb|ADW19004.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 142 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+++ R +K L K E S +G +A + + ++ + ++L D+ MP DGIE Sbjct: 6 VLIVDDEEEFREMTVKRLSKRDLECDSAPDGDTALEMITKKNYDVVLLDVKMPGKDGIET 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R + P +V+ +TG A+V + L KP L L ++N Sbjct: 66 LREIKRITPMTEVVMLTGHASVESGINGIKYGAFDYLMKPMELDPLFEKLN 116 >gi|302039358|ref|YP_003799680.1| putative CheY-like response regulator [Candidatus Nitrospira defluvii] gi|300607422|emb|CBK43755.1| putative Response regulator, CheY-like [Candidatus Nitrospira defluvii] Length = 276 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ IL+ +DD R L++ LG GY V + +G A + E LL+ D+ MPEM+G Sbjct: 155 DEHILVVDDDVMARDLLVRFLGLRGYHVRAAPDGREALRLIGESVPDLLILDLAMPEMNG 214 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +E+ R D + + ++G +L ++ A +VL KP L Sbjct: 215 VEVLRALAARDYAGRTIILSGHHNDSLLAEAWALGPQEVLDKPIDL 260 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 1/113 (0%) Query: 6 LLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DDD + L++ AL + GY+V G R+ + L D+ MPEMDG+ + Sbjct: 19 LLVIDDDRLHCDLLQMALARHGYQVSIATGGREGVALFRQLRPLVTLLDLRMPEMDGLAV 78 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + DP V+ + G A L + + L K L L+ V+R+ Sbjct: 79 LKEIRTHDPRAGVIMLGGGATEELENRARELRVTDFLRKGLSLDVLIGAVHRV 131 >gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] Length = 1325 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+++L+ +D+D R L L + VV+ +NG A +++ +PF +L D MP M+G Sbjct: 851 NKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNG 910 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVL-SKPFHLRDLVNEV 114 IEL R L K +T + +N DS K L KP + +L++ + Sbjct: 911 IELLTRVKSLGLRDHTKCFLVTAYGR-DINLDSENSKLIDALIVKPVNPSNLLDAI 965 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QK+LL ED++ + + L + G V NNG A +K+ F L+L D+ MP MDGI Sbjct: 992 QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051 >gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 1325 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+++L+ +D+D R L L + VV+ +NG A +++ +PF +L D MP M+G Sbjct: 851 NKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNG 910 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVL-SKPFHLRDLVNEV 114 IEL R L K +T + +N DS K L KP + +L++ + Sbjct: 911 IELLTRVKSLGLRDHTKCFLVTAYGR-DINLDSENSKLIDALIVKPVNPSNLLDAI 965 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QK+LL ED++ + + L + G V NNG A +K+ F L+L D+ MP MDGI Sbjct: 992 QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051 >gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 233 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+D+ ++ + L + GY + +NG A D ++ + L + DI+MP++DG E+ Sbjct: 6 VLIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIMMPKIDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 R+ E L ++F++ A L+ + + A ++KPF+ +LV VN L Sbjct: 66 TRQIRE-KHHLPIIFLSA-KATDLDKITGLVRGADDYMTKPFNPMELVARVNAQL 118 >gi|254447602|ref|ZP_05061068.1| CheA signal transduction histidine kinase [gamma proteobacterium HTCC5015] gi|198262945|gb|EDY87224.1| CheA signal transduction histidine kinase [gamma proteobacterium HTCC5015] Length = 1780 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +++ +D +R+ + L + YEVV+ +G A +++E ++L DI MP MDG Sbjct: 1661 KTVMVVDDSITIRKVSARFLERNNYEVVTAKDGMDAVAQLQEVRPDVMLLDIEMPRMDGY 1720 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+A RAT+ DL ++ IT + + L KPF +L+ E+ LL Sbjct: 1721 EVATHVRATQEIEDLPIIMITSRTGDKHRERAMQIGVNRYLGKPFQEAELLEEITNLL 1778 >gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36] gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36] Length = 234 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 58/122 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ ED D+ + L G +V C+N A+ ++R+ F L+L D+ +P+MD Sbjct: 1 MDTHVLVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNLPDMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ ++ D + +M +T L+KPF + +L V LL Sbjct: 61 GLDICKKIRINDAIVPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALLRR 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|85858018|ref|YP_460220.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85721109|gb|ABC76052.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 546 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREE--PFSLLLTDIVMPE 58 +IL +D+ +R L GYEV +G Y K +EE PFS ++ D+ +P+ Sbjct: 425 RILFMDDEKMIRDVTGALLTHMGYEVSCVGDGVEVIELYQKAKEENQPFSCVILDLTIPD 484 Query: 59 -MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G + ++ ELD ++KV+ +G+ L D ++KP+ + +L++ + R Sbjct: 485 GMGGRKTMQKLLELDSEIKVIISSGYGNDPLIQDFREYGFKGAITKPYKIEELMDTLQRT 544 Query: 118 L 118 L Sbjct: 545 L 545 >gi|60682314|ref|YP_212458.1| putative regulatory protein [Bacteroides fragilis NCTC 9343] gi|253564774|ref|ZP_04842230.1| sigma factor SigB regulation protein RsbU [Bacteroides sp. 3_2_5] gi|265766250|ref|ZP_06094291.1| sigma factor SigB regulation protein RsbU [Bacteroides sp. 2_1_16] gi|60493748|emb|CAH08538.1| putative regulatory protein [Bacteroides fragilis NCTC 9343] gi|251946239|gb|EES86616.1| sigma factor SigB regulation protein RsbU [Bacteroides sp. 3_2_5] gi|263253918|gb|EEZ25383.1| sigma factor SigB regulation protein RsbU [Bacteroides sp. 2_1_16] gi|301163788|emb|CBW23343.1| putative regulatory protein [Bacteroides fragilis 638R] Length = 389 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 23/145 (15%) Query: 1 MNQKILLAEDDDDMR----RFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIV 55 M KIL +D+ D+ ++ + + K YE +NG A K+ E P F ++L+DI Sbjct: 1 MAVKILSVDDELDLEVLLTQYFRRQIRKGEYEFAFAHNGLEALQKLLETPDFDIILSDIN 60 Query: 56 MPEMDGIELARRATEL-DPDLKVMFITG-----------------FAAVALNPDSNAPKN 97 MPEMDG+ L + EL +P +K + ++ FA ++ D + Sbjct: 61 MPEMDGLTLLAKVNELKNPAMKCIMVSAYGDMDNIRSAMNKGAFDFATKPIDLDDLSRTI 120 Query: 98 AKVLSKPFHLRDLVNEVNRLLTIKN 122 K + + ++R+ E N+L +IKN Sbjct: 121 EKAIEQVRYIRESQQEHNQLESIKN 145 >gi|53714258|ref|YP_100250.1| sigma factor SigB regulation protein RsbU [Bacteroides fragilis YCH46] gi|52217123|dbj|BAD49716.1| sigma factor SigB regulation protein RsbU [Bacteroides fragilis YCH46] Length = 389 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 23/145 (15%) Query: 1 MNQKILLAEDDDDMR----RFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIV 55 M KIL +D+ D+ ++ + + K YE +NG A K+ E P F ++L+DI Sbjct: 1 MAVKILSVDDELDLEVLLTQYFRRQIRKGEYEFAFAHNGLEALQKLLETPDFDIILSDIN 60 Query: 56 MPEMDGIELARRATEL-DPDLKVMFITG-----------------FAAVALNPDSNAPKN 97 MPEMDG+ L + EL +P +K + ++ FA ++ D + Sbjct: 61 MPEMDGLTLLAKVNELKNPAMKCIMVSAYGDMDNIRSAMNKGAFDFATKPIDLDDLSRTI 120 Query: 98 AKVLSKPFHLRDLVNEVNRLLTIKN 122 K + + ++R+ E N+L +IKN Sbjct: 121 EKAIEQVRYIRESQQEHNQLESIKN 145 >gi|95930793|ref|ZP_01313525.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133141|gb|EAT14808.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 591 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL ED+ + + L G + +NGA A + + F+L+L DI MP MDG+ Sbjct: 469 KQILLVEDNKINQEIALDILEDVGLSITIADNGAQAVTDIGKSEFALVLMDIQMPVMDGL 528 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ +L L ++ +T A+V D A V+SKP L + R L Sbjct: 529 EATKQIRKLPQYSSLPILAMTANASVEDKKDCLAAGMQDVISKPVDPEQLFKTLVRWL 586 >gi|295703076|ref|YP_003596151.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294800735|gb|ADF37801.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 122 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 2/104 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ +R ++ L G++V NG A + ++E F L++ D +MP G+E Sbjct: 3 KILLAEDEEVLRMLVVDTLEDEGHDVTEAENGEEALEFIKERDFDLIILDYMMPVFTGLE 62 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + ++ E+ KV+ ++ A A +SKPF Sbjct: 63 VIQQLKEMKDKRHTKVLMLSAKNQAADQSRVLEAGAAYFMSKPF 106 >gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] Length = 1325 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+++L+ +D+D R L L + VV+ +NG A +++ +PF +L D MP M+G Sbjct: 851 NKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNG 910 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVL-SKPFHLRDLVNEV 114 IEL R L K +T + +N DS K L KP + +L++ + Sbjct: 911 IELLTRVKSLGLRDHTKCFLVTAYGR-DINLDSENSKLIDALIVKPVNPSNLLDAI 965 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QK+LL ED++ + + L + G V NNG A +K+ F L+L D+ MP MDGI Sbjct: 992 QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051 >gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL ED D+ +++ L + G E+ +G + + + F L++ DI++P M+G Sbjct: 3 GSKVLLIEDTPDLVSVILRGLSEEGIEISVAADGVTGLEMAFKYDFDLIVLDIMLPVMNG 62 Query: 62 IELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I++ + + + D+ ++ +T + + +S A L KPF L +LV + L+ Sbjct: 63 IQVCKEIRKRNTDVAILMLTALGSTENIVTGLESGAD---DYLVKPFKLEELVARMRTLI 119 >gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] Length = 225 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ +G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|254480146|ref|ZP_05093394.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214039708|gb|EEB80367.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 676 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 10/128 (7%) Query: 1 MNQKILLAEDDDD---MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 ++ KILLA+D++ + +I++LG EV + +NG A + + L+L DI MP Sbjct: 419 LSGKILLADDNETNLILGAMIIESLG---IEVATAHNGTEAVAAALNDHYDLVLMDIHMP 475 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 + DG+E RR E+ ++V+ I A+A + + L+KP ++L+NE+ Sbjct: 476 DFDGLEATRRIREMKA-IEVLPIVALTALAYEKEKERCIGGGMNGYLTKPIVKQELMNEL 534 Query: 115 NRLLTIKN 122 + L N Sbjct: 535 GKWLPSSN 542 >gi|254428753|ref|ZP_05042460.1| hypothetical protein ADG881_1983 [Alcanivorax sp. DG881] gi|196194922|gb|EDX89881.1| hypothetical protein ADG881_1983 [Alcanivorax sp. DG881] Length = 120 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D L+K + G++VV+ NG +K R+E L+L D+VMPE++G + Sbjct: 3 KILVVDDSPTQLTNLVKIVQGQGHDVVTATNGMEGIEKARQEQPDLILMDVVMPELNGFQ 62 Query: 64 LARRATELDP---DLKVMFIT 81 R+ T DP + V+ +T Sbjct: 63 ATRKITR-DPATESIPVILVT 82 >gi|191171811|ref|ZP_03033357.1| transport activator [Escherichia coli F11] gi|190907846|gb|EDV67439.1| transport activator [Escherichia coli F11] Length = 415 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 8 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAWIQPDWPGIVLSDVCMPGCSGIDL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D L ++ ITG V + D+ L KP L LV E R Sbjct: 68 MMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 122 >gi|219849103|ref|YP_002463536.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543362|gb|ACL25100.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 276 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 45/83 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L L +AGY V + G A + E F L+L D+ MP M G+E Sbjct: 8 RVLVVDDEQNIRLTLNALLSRAGYAVTTAATGEEAVELFERESFDLMLVDLQMPGMKGME 67 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + + E D ++ +TG ++ Sbjct: 68 VVAKVREAGHDAIIIVLTGHGSL 90 >gi|260062951|ref|YP_003196031.1| response regulator [Robiginitalea biformata HTCC2501] gi|88784519|gb|EAR15689.1| response regulator [Robiginitalea biformata HTCC2501] Length = 514 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL +D+ D+ + + L + Y VV+CN+G A + +R+E F ++ D MP + G Sbjct: 3 NFTILWVDDEIDLLKSHLLFLEERNYRVVTCNSGQDALEAIRQESFDIVFLDENMPGLSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E + + L V+ IT +L ++ K A L KP VN LL++K Sbjct: 63 LETLTEIKQQNASLPVVMITKNEEESLMEEAIGSKIADYLIKP------VNPNQILLSLK 116 >gi|312864239|ref|ZP_07724473.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311100240|gb|EFQ58449.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 225 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAED++ + R AL GYEV NG A D + + +++ DI+MP Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNAYQVMIMDIMMPIKT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE + V+ +T A + D+ A L+KP L++L+ + L Sbjct: 61 GIEALKEIRSSGDRTHVIMLTAMAEIDDRVTGLDAGAD---DYLTKPISLKELLARLRSL 117 >gi|296271820|ref|YP_003654451.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296095995|gb|ADG91945.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 226 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 55/107 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL EDD+ +R + L + E+ +G Y+ ++ ++LTDI MP++DGI L Sbjct: 9 ILYIEDDEGVRTINSRFLNRMFNELYEAKDGEEGYELYKKYHPDIILTDIKMPKLDGISL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 A++ + D K++ T F+ + D+ K + KP R+L+ Sbjct: 69 AKKIRQKDTTTKIIISTAFSEKSYLLDAIELNLEKYIIKPLTSRNLL 115 >gi|197118912|ref|YP_002139339.1| response receiver [Geobacter bemidjiensis Bem] gi|197088272|gb|ACH39543.1| response receiver [Geobacter bemidjiensis Bem] Length = 126 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ ED+ D + AL +AGY+V S GA+ E F L++ DI +P+ DG Sbjct: 2 KQVLVIEDNRDNLGLIRFALERAGYKVTSAETGAAGVSVALESSFDLIIVDINLPDFDGY 61 Query: 63 ELARRATELDPD 74 E+ RR + PD Sbjct: 62 EVTRRIRKASPD 73 >gi|188592079|ref|YP_001796677.1| chemotactic response regulator, transmits chemoreceptor signals to flagelllar motor components [Cupriavidus taiwanensis LMG 19424] gi|170938453|emb|CAP63440.1| chemotactic response regulator, transmits chemoreceptor signals to flagelllar motor components [Cupriavidus taiwanensis LMG 19424] Length = 130 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D +RR + L G++V +G A+ F +L+TD VMP MDG+ Sbjct: 5 SILVVDDSPSLRRMIGACLRAGGFDVTEAADGDQAHALAVAGSFGMLVTDQVMPGMDGLT 64 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R RAT + ++ +T ++ + A + L KPF L+ V LL Sbjct: 65 LIRSLRATPRYARMPILMLTTEQDGSIREQARAAGASGFLPKPFDPDGLMQAVAALL 121 >gi|167561656|ref|ZP_02354572.1| response regulator/HD domain protein [Burkholderia oklahomensis EO147] Length = 469 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L A Y+VV+ +GA+A D + L+++D+ MP M G E Sbjct: 33 ILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAAGEVDLIVSDMRMPGMTGAEF 92 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA PD + +TG++ + A+ N + L+KP+ DL+ V + L Sbjct: 93 LARAQTRHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVKQAL 147 >gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ D+ R L L Y V SC +G A D + P+ ++ DI+MP +DG+ Sbjct: 2 RILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIMMPVLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T +V L+ +N L KPF +L+ + LL Sbjct: 62 VLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGAN-----DYLVKPFAFEELLARIRVLL 116 >gi|159897249|ref|YP_001543496.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890288|gb|ABX03368.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ +DD +RR L+ L G+EV++ +G SA V L + D++MP M G Sbjct: 4 RWRILVVDDDTIIRRTLVSNLLNDGFEVMAAESGQSALTMVESSWPDLAILDLMMPGMTG 63 Query: 62 IELA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL+ RR E + V+ +T + A ++KP+ +L VN+LL Sbjct: 64 FELSDRLRRYVE----IPVIMLTSISDEATTVRGLEQHADDYMTKPYRYPELRARVNKLL 119 Query: 119 T 119 T Sbjct: 120 T 120 >gi|94994784|ref|YP_602882.1| two-component response regulator yesN [Streptococcus pyogenes MGAS10750] gi|94548292|gb|ABF38338.1| Two-component response regulator yesN [Streptococcus pyogenes MGAS10750] Length = 246 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLIRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA E P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKEHAPQTHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|94499427|ref|ZP_01305964.1| putative response regulator [Oceanobacter sp. RED65] gi|94428181|gb|EAT13154.1| putative response regulator [Oceanobacter sp. RED65] Length = 560 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 16/132 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D R L L G++V NG A ++ + F L+L D++MP MDG+E Sbjct: 3 ILVVDDQVTNREILKWLLEDEGHQVSEAQNGEEAVNEFKSGDFDLVLMDVIMPIMDGLEA 62 Query: 65 ARRATEL---DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-----------HLRDL 110 +R E+ D + V+F+T D LSKP+ HLR Sbjct: 63 TKRIKEIGQEDNYVPVIFLTALDDAKALKDCLDSGGDDFLSKPYNEVILKAKIHAHLR-- 120 Query: 111 VNEVNRLLTIKN 122 + E+ R ++ KN Sbjct: 121 IRELTRDISEKN 132 >gi|94263817|ref|ZP_01287623.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455828|gb|EAT05995.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 476 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 45/88 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D+ +R+ L G V +G ++ E F L+L D MP MD Sbjct: 9 MEGRVLIIDDEASVRKGFASLLAAEGLTVTVAADGQEGLVLLQRESFDLVLLDFAMPGMD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVAL 88 G+E+ RR L+ V+ ITG+ V+L Sbjct: 69 GLEVLRRIKVLEQAPMVIMITGYGEVSL 96 >gi|73538868|ref|YP_299235.1| PAS [Ralstonia eutropha JMP134] gi|72122205|gb|AAZ64391.1| PAS [Ralstonia eutropha JMP134] Length = 855 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 5/113 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+AEDD+ RR + + L GY V +GA A D+ R ++LLLTD+ MP +DG Sbjct: 609 HRLLVAEDDEINRRVISRQLQLLGYRVDFAADGADALDRWRRGSYALLLTDLHMPRLDGY 668 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 L RA E M + A A+ ++ ++ + L+KP L L Sbjct: 669 ALCDQIRAEEAQAGRTRMPVIALTANAIKGEALQARDIGMDDYLAKPLTLSAL 721 >gi|302342988|ref|YP_003807517.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301639601|gb|ADK84923.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 238 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 48/85 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+ ++R + +AL G V + NG A + EEPF ++ D+ MP MDG Sbjct: 3 DKRLLVVDDEKNIRLTVTQALEDLGLPVRTAVNGEEAMTMLDEEPFDVVFLDLRMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 +E RR + P +V+ IT + Sbjct: 63 MEALRRIRDGWPKTRVIVITAHGKI 87 >gi|300725169|ref|YP_003714497.1| response regulator in two-component regulatory system with GlnL [Xenorhabdus nematophila ATCC 19061] gi|297631714|emb|CBJ92433.1| response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) [Xenorhabdus nematophila ATCC 19061] Length = 478 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 55/116 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD +R L +AL AG E S N + + + +LL+DI MP ++G+ Sbjct: 5 KIWIVDDDSSIRWVLERALSGAGMECTSFENADAVLSALSQSSPEVLLSDIRMPGLNGLS 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + + P L V+ +T + + + L KPF + + V V R L+ Sbjct: 65 LLNKIKQNHPQLPVIIMTAHSDLDAAVSAYQHGAYDYLPKPFDIDETVALVERALS 120 >gi|284037542|ref|YP_003387472.1| response regulator receiver protein [Spirosoma linguale DSM 74] gi|283816835|gb|ADB38673.1| response regulator receiver protein [Spirosoma linguale DSM 74] Length = 128 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL EDD +R + + L GY+V+ NGA ++ +L+L D+ MP+M+G + Sbjct: 7 KILFIEDDSALRTNVAELLTIKGYDVLIAANGAEGIYLAKDGIPNLILCDLSMPDMNGQQ 66 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A R + +F+TG + ++ K L+KPF L DL+ +N L Sbjct: 67 VMEAIRNIPAAAHIPFLFLTGQSDPSVLHQQMGLKTIDYLAKPFQLTDLLVAINNRL 123 >gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 223 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ M L L GY V C +G +A + L+L DI+MPEMDG E Sbjct: 4 ILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIMMPEMDGWET 63 Query: 65 ARRATELDPDLKVMFITG 82 +R E D+ ++ +T Sbjct: 64 CKRIREFS-DVPIIMVTA 80 >gi|253996659|ref|YP_003048723.1| CheA signal transduction histidine kinase [Methylotenera mobilis JLW8] gi|253983338|gb|ACT48196.1| CheA signal transduction histidine kinase [Methylotenera mobilis JLW8] Length = 1729 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+ L DD MR+ L + L + G+EVV+ N+G A K+++ +++L+DI MP MDG Sbjct: 1609 KKVALVVDDSLTMRKVLSRVLERDGFEVVTANDGMDAIQKLQQISPAIILSDIEMPRMDG 1668 Query: 62 IELAR 66 E +R Sbjct: 1669 FEFSR 1673 >gi|239905559|ref|YP_002952298.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795423|dbj|BAH74412.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 2025 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 11/124 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +R + + L KAGY V +G+ A + +R F +L D+ MP +DG+ Sbjct: 1900 VLLVEDDSISQRSIQRLLEKAGYHVTVAGDGSQALEILRRAKFDCVLMDVQMPVLDGVTA 1959 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 +R + +D + ++ +T F A++ D + A + LSKP L + +++ Sbjct: 1960 TKRIRSDVSGAVDRTIPIVALTAF---AMSGDQDIFLKAGMDGYLSKPVSLEKMKQAIDQ 2016 Query: 117 LLTI 120 L + Sbjct: 2017 ALAV 2020 >gi|218778402|ref|YP_002429720.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759786|gb|ACL02252.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 847 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM 59 ++ IL+AEDD +R+ L KAGY V+ +G A K++ + SL++ DI MP + Sbjct: 717 DETILIAEDDTMVRQMAAAILEKAGYTVLEAGDGQEAVTLFKLQSDRLSLVILDITMPNL 776 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + P V+ + + D A K L KP+ L+ V +++ Sbjct: 777 TGKAAFEEICRIKPGTPVLVCSAYDEGTDKTDFVAKKGLSYLQKPYSANTLLKTVRKIM 835 >gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 890 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 +K+LL EDD L+ AL +V NG + D +++ + F L+L DI+MP MDG Sbjct: 766 KKVLLVEDDARNVFALVNALENKKMQVTVAGNGRACMDLLKDNKDFDLVLMDIMMPLMDG 825 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E R + P+L+ M I A A+ D + A +SKP + L + + L Sbjct: 826 YETMREMRK-QPELQAMPIIALTAKAMKSDRDKCLEAGASDYISKPLQMDQLYSLMQVWL 884 Query: 119 T 119 T Sbjct: 885 T 885 >gi|145294404|ref|YP_001137225.1| hypothetical protein cgR_0359 [Corynebacterium glutamicum R] gi|140844324|dbj|BAF53323.1| hypothetical protein [Corynebacterium glutamicum R] Length = 222 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 54/112 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD + F+++ L + G+E +GA A+ + F L++ D+ +P MDG + Sbjct: 3 KILLAEDDAGIADFIVRGLIREGFECEITESGAEAFARAHSGDFDLMVLDLGLPHMDGTD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + L L ++ +T + + + KPF +L+ + Sbjct: 63 ILEQLRNLQVTLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARIK 114 >gi|77920528|ref|YP_358343.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546611|gb|ABA90173.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 409 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDDD +RR + L + G++V + ++G A + + F L+L DI MP +DG+E Sbjct: 283 RILLVEDDDAIRRLVELLLQQRGWQVTAVSDGLQALESFQANRFDLVLMDIRMPRLDGLE 342 Query: 64 LARRATELDPDLKV--MFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR + L++ + I G A A D + A + LSKP L + + R L Sbjct: 343 TTRRIRRREQTLRMSSLPIVGMTAHAAVQDRSMCLEAGMDDYLSKPIASDRLYSIIERSL 402 >gi|39996543|ref|NP_952494.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983424|gb|AAR34817.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298505559|gb|ADI84282.1| sensor histidine kinase response regulator, HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 654 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + +LLAEDD +R+ L + GYEV+ +G A K E L+L D+VMP + Sbjct: 535 ETVLLAEDDKAVRKLSRHVLERNGYEVIEAADGNDAVKKFAESVNKIDLVLLDVVMPGKN 594 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + P +K +FI+G+ + ++ ++KP L+ V L Sbjct: 595 GQVAFEEMKRIQPAIKALFISGYTKDIIGSKGFLAEDINFIAKPVKPDQLIARVQEAL 652 >gi|19551523|ref|NP_599525.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389170|ref|YP_224572.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323036|dbj|BAB97665.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324503|emb|CAF18843.1| PUTATIVE TWO COMPONENT RESPONSE REGULATOR [Corynebacterium glutamicum ATCC 13032] Length = 222 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 54/112 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD + F+++ L + G+E +GA A+ + F L++ D+ +P MDG + Sbjct: 3 KILLAEDDAGIADFIVRGLIREGFECEVTESGAEAFARAHSGDFDLMVLDLGLPHMDGTD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + L L ++ +T + + + KPF +L+ + Sbjct: 63 VLEQLRNLQVTLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARIK 114 >gi|331002058|ref|ZP_08325578.1| hypothetical protein HMPREF0491_00440 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411854|gb|EGG91259.1| hypothetical protein HMPREF0491_00440 [Lachnospiraceae oral taxon 107 str. F0167] Length = 223 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + R A GYEVV +G A + E F L++ DI+MP+M G+E Sbjct: 2 RILLAEDEVGLSRAYATAFRMQGYEVVQAFDGERALELASSEIFDLMIFDIMMPKMTGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + ++ + ++ +T + + + + L+KP L +L+ + L Sbjct: 62 VLKKIRDAGNSTYIIILTAMSELNDKIEGLDLGADEYLTKPIDLGELLARIRSL 115 >gi|330836602|ref|YP_004411243.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirochaeta coccoides DSM 17374] gi|329748505|gb|AEC01861.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirochaeta coccoides DSM 17374] Length = 453 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+A+D+ ++R L A+ GY V+ +G A++ + + L+++D+ MP + Sbjct: 1 MKRTILIADDEKNIREGLGMAMELEGYAVLLAADGTEAWNLINSQTVDLVISDLRMPGLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G EL ++ + P L V+ +TG + + ++KP +L L V R L Sbjct: 61 GEELLKKISGAYPRLPVVILTGHGTIESAVTAMRDGAVDFITKPVNLDRLTLLVKRSL 118 >gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1334 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++++R L + K Y V +G ++K +E ++L+DI+MP+M GIE Sbjct: 1085 KILIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ + V+ +T A ++KPF+++ L N L+ Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200 >gi|293395210|ref|ZP_06639496.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582] gi|291422387|gb|EFE95630.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582] Length = 930 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 49/107 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D RR L L GY V++ N+G A + P ++LTD+ MP MDG Sbjct: 806 RLLVVDDHPINRRLLSDQLTSLGYRVITANDGVDALGVLSHNPVDIVLTDVNMPNMDGYR 865 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L +R +++ V+ +T A LSKP L L Sbjct: 866 LTQRLRQMNFTSPVIGVTANALAEEKQRCIEAGMDNCLSKPVTLETL 912 >gi|242241356|ref|YP_002989537.1| nitrogen regulation protein NR(I) [Dickeya dadantii Ech703] gi|242133413|gb|ACS87715.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Dickeya dadantii Ech703] Length = 470 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + +NG A + + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|218513763|ref|ZP_03510603.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli 8C-3] Length = 180 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R + L GY+V+ +G D + +++ D+ +P M G Sbjct: 65 KLLLVEDDAFIRMDTAEILHDLGYDVIEAESGEQGADILDHTLVDIIVVDLGLPGMSGSA 124 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 A RA E P + ++F TG + + PDSN + +L KPF Sbjct: 125 FAARAREALPSVGLVFATGGSDL---PDSNHLSGSVLLPKPF 163 >gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] Length = 231 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ EDD D+ L ++L +AGYEV NG A K ++ L++ D++MP + Sbjct: 1 MTHRILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQAL-KFVDDSLDLVILDVMMPGIS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE ++ ++ ++F+T ++ + ++KPF +L Sbjct: 60 GIETCQQ-MRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEEL 108 >gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea] Length = 247 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ MRR L L GY V+S ++G A + R+E +L++ DI+MP++DG + Sbjct: 13 ILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIMMPKLDGFGV 72 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D+ ++ +TG + L KPF ++L + +L Sbjct: 73 CQEIRK-ESDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVL 125 >gi|86160391|ref|YP_467176.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776902|gb|ABC83739.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 123 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 +IL+ EDD +R + + L + GY V NGA A D++ ++P +L++ D++MP MDG Sbjct: 6 RILVVEDDLAIRETIAELLQEEGYAVSCAANGAEALDRLAAVDQPPNLIVLDLMMPIMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 R DP L + + +A DS A V L KPF L V+ V+RL Sbjct: 66 WAF-RSVQRDDPRLSRIPVLVLSA-GHGGDSRAVAGLGVEGFLPKPFDLASFVDAVHRL 122 >gi|83815508|ref|YP_445249.1| FixL-related histidine kinase [Salinibacter ruber DSM 13855] gi|83756902|gb|ABC45015.1| FixL-related histidine kinase [Salinibacter ruber DSM 13855] Length = 601 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R + + L +G+EV +GA A + + ++ TD MPEM G EL Sbjct: 488 ILVVDDEEMVRSTVTRLLTLSGHEVDRAASGAKALEMFSAGAYDIVFTDFGMPEMTGAEL 547 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 A + P L V+ +TG+ +S + +LSKPF +L + + Sbjct: 548 AHALKDEAPALPVVLLTGYTET----ESAHDEVDGILSKPFKRDELDTAIQK 595 >gi|329961611|ref|ZP_08299670.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531603|gb|EGF58437.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1318 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD DMR +L +L + Y+VV +G A + RE ++++D+VMP ++G EL Sbjct: 1076 LLLAEDDPDMREYLTNSL-SSEYKVVGVPDGGKALEMAREINPDIIISDVVMPVLEGDEL 1134 Query: 65 AR 66 R Sbjct: 1135 CR 1136 >gi|327482123|gb|AEA85433.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 743 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMP-EM 59 ++L+ +DD ++R ++ L + GY+V + A ++ R+ +LL+D+VMP + Sbjct: 619 RVLVVDDDAEVREAMVAMLDELGYQVDEAPSADDALARLADRRQPAIDILLSDVVMPGRL 678 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ LA L P + ++ +G+ +A P +VL+KPF + L ++ +L Sbjct: 679 DGVGLAEEVQRLYPTIPIILASGYTTRIATEP------AVRVLAKPFSHQALAETLSEVL 732 >gi|251772014|gb|EES52586.1| two component transcriptional regulator, winged helix family [Leptospirillum ferrodiazotrophum] Length = 228 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++ILL EDD + R L +L GY V S + F ++L D+ +P+ Sbjct: 1 MNKEILLVEDDPMIARTLTMSLPYRGYAVSSVRTLKEGLQASADRRFDIVLIDLQLPDGS 60 Query: 61 GIELARRATELDPDLKVMFIT-------GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G +L + E PDL V+ IT ++ L D + + KPF L +L Sbjct: 61 GYDLCQSLKERSPDLPVLIITARTDEKSAVHSLTLGADDH-------IRKPFGLDELTAR 113 Query: 114 VNRLL 118 + RLL Sbjct: 114 MGRLL 118 >gi|239625981|ref|ZP_04669012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520211|gb|EEQ60077.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 520 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 37/50 (74%) Query: 34 NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 +G A+ +++E P +L+TDI MP +DG+EL+R A EL+P++ ++ I+ + Sbjct: 36 DGLEAWTQIKEHPPDILITDIRMPYIDGLELSRLAKELNPNIVILIISAY 85 >gi|220908403|ref|YP_002483714.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865014|gb|ACL45353.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 653 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ D R ++ L + G +V+ N +A + + + F LL++DI +P+MDG Sbjct: 530 KILVVEDEPDARNLMVWILAEVGVSLVTVNAADAALEALSRDRFDLLISDIALPDMDGYR 589 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ E L + +T +A + A + L+KP L+ + LL Sbjct: 590 LLQQVREFASAQVLPAIALTAYAGDLDRQTALASGYQQHLAKPIEPAVLIAAIAELL 646 >gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 642 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED++ + L K + K GY + NG A + + P+ ++ DI MP MDG+E Sbjct: 517 KILIAEDNEVNQLVLKKMIEKLGYNSTTVLNGLEAVEAFKRYPYDMVFMDIQMPFMDGME 576 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLTI 120 + E P +I A A+ D + +SKP L + ++R L Sbjct: 577 AVQLIKESAPPDHQPYIVAVTAHAIKGDREKYLGMGMDEYVSKPVSLNVISAIIDRFLAE 636 Query: 121 KN 122 +N Sbjct: 637 RN 638 >gi|218781423|ref|YP_002432741.1| CBS sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762807|gb|ACL05273.1| CBS sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 531 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ IL +D+ + ++L KAGY+V N A ++ +P F L++TD+ MPEM Sbjct: 411 HESILFVDDEKAITNLFKQSLEKAGYKVAVYTNPIIALTSLKSQPGAFDLVITDMTMPEM 470 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA + D+ V+ TG++ + + VL+KP +L + ++L Sbjct: 471 TGDVLAFEIRRIRQDIPVILCTGYSQMLSDKTIKVLGLNAVLNKPVLSSELTRIIRQVL 529 >gi|149914885|ref|ZP_01903414.1| nitrogen regulation protein NtrC [Roseobacter sp. AzwK-3b] gi|149811073|gb|EDM70910.1| nitrogen regulation protein NtrC [Roseobacter sp. AzwK-3b] Length = 455 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIQAEEAEAYDYLPKPFDLPDLMKRTARAL 118 >gi|167032714|ref|YP_001667945.1| response regulator receiver modulated serine phosphatase [Pseudomonas putida GB-1] gi|166859202|gb|ABY97609.1| response regulator receiver modulated serine phosphatase [Pseudomonas putida GB-1] Length = 393 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G+ V+ NG E L++ D+ MP+M G+EL Sbjct: 8 LLIIDDDDVVRASLAAYLEDSGFSVLQAGNGQQGLQVFEEHQPDLVICDLRMPQMGGLEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH-LRDLVNEVNRLL 118 R+ +E P L V+ ++G ++ ++ A L KP L L + V R L Sbjct: 68 IRQVSERAPQLPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 >gi|124266005|ref|YP_001020009.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] gi|124258780|gb|ABM93774.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] Length = 975 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED+ DMRRF+++ L + + VV +G A + R + ++TD++MP++ G +L Sbjct: 452 VLVAEDNADMRRFIVEVL-SSDFRVVHAADGLQALTQARAQAPDAIITDLMMPKLGGDKL 510 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R+T + V+ ++ A +L + + KPF R+L+ V ++T+K Sbjct: 511 VSELRSTPELAHIPVLVLSAKADESLRLKLLSDSVQDYIVKPFSSRELLVRVRNIVTMK 569 >gi|116329570|ref|YP_799289.1| response regulator of a two component regulatory system [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332459|ref|YP_802176.1| two component regulatory system response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122463|gb|ABJ80356.1| Response regulator of a two component regulatory system [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116127326|gb|ABJ77418.1| two component regulatory system response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 230 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD + L + L K GYEV + A V++E L+L D+ +P+ D Sbjct: 1 MRAKLLLVEDDRSLGETLQERLQKEGYEVFWTVSAIFAKKLVKDEKPHLILLDVRLPDGD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA + +F+T A + + KPFHL++L+ V +L Sbjct: 61 GFTLAEELKKTKDCPPFLFLTAQAGAPERLRGFELGAEEFIPKPFHLKELLLRVKHVL 118 >gi|116253775|ref|YP_769613.1| chemotaxis two-component response regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258423|emb|CAK09526.1| CheY3-response regulator of secondary chemotaxis operon [Rhizobium leguminosarum bv. viciae 3841] Length = 122 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL +D +R L AGY V NGA + F L++TD+ MP MD Sbjct: 1 MTANILTVDDSASIRLTTKVTLTNAGYSVTEAVNGAEGLATAKGSSFDLIVTDLNMPVMD 60 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + +L + ++F+T + L + A L+KPF LV V ++L Sbjct: 61 GLTMIEELRKLPAQAGVPIIFLTTESDADLKARAKAAGATGWLTKPFDPESLVKIVKKVL 120 >gi|71906117|ref|YP_283704.1| two component, sigma54 specific, Fis family transcriptional regulator [Dechloromonas aromatica RCB] gi|71845738|gb|AAZ45234.1| two component, sigma54 specific, transcriptional regulator, Fis family [Dechloromonas aromatica RCB] Length = 443 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD D+ +AL G + A ++ + ++++DI +P DG+ Sbjct: 6 KILIIEDDPDVALGCEQALQLEGLAAECAGSAELARHRLHADFPGIVISDIRLPGQDGLS 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R LDP+L V+ ITG V++ + L KPF LV+ R L Sbjct: 66 LQRELHALDPELPVLLITGHGDVSMAVQAMKDGAYDFLQKPFAPEQLVDIARRAL 120 >gi|109897859|ref|YP_661114.1| response regulator receiver modulated diguanylate phosphodiesterase [Pseudoalteromonas atlantica T6c] gi|109700140|gb|ABG40060.1| response regulator receiver modulated diguanylate phosphodiesterase [Pseudoalteromonas atlantica T6c] Length = 563 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ L + L K +EV N+ ++E ++L+D MP+M G E Sbjct: 14 KLLVVDDEPNILSSLKRCLVKTPFEVFMANSAQEGLAIMQEHNIQVVLSDFRMPQMSGAE 73 Query: 64 LARRATELDPDLKVMFITGFA----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + PD+ M ++GFA A+ L N+ K L KP++ + L+ EV+ Sbjct: 74 FLEQIKQHHPDVISMVLSGFADFDSAIGL---LNSGAAHKFLRKPWNNQQLIEEVD 126 >gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 213 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKERPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +KV+ ++ F+ Sbjct: 61 MDGIEATKRLKQYDETIKVLILSSFS 86 >gi|311693219|gb|ADP96092.1| two component, sigma54 specific, transcriptional regulator, Fis family [marine bacterium HP15] Length = 467 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +R + K L AGYEV + A + F L+++D+ +P G E Sbjct: 3 RILIVEDEDIIRSAVRKLLLHAGYEVADAASVEEAEQNHEPDQFDLIISDLRLPGAAGTE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L RA P+ V+ +T +A++ DS + ++KPF +++ V +L K Sbjct: 63 LINRA----PNTPVLIMTSYASLRSAVDSMKMGAVEYIAKPFDHDEMLAAVENILARK 116 >gi|304404743|ref|ZP_07386404.1| two component transcriptional regulator, AraC family [Paenibacillus curdlanolyticus YK9] gi|304346550|gb|EFM12383.1| two component transcriptional regulator, AraC family [Paenibacillus curdlanolyticus YK9] Length = 263 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKAL---GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 ++ IL+ +D+ R L K L + YE+V+ NG A + E P L+LTDI MPE Sbjct: 4 SKTILIVDDEPRTREGLKKTLETWAGSSYEIVTAENGDDALAFIAERPVHLMLTDIRMPE 63 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M+G+ L E + V+ ++G++ + L KP L+ V + L Sbjct: 64 MNGLSLIHAIKEQGRNPVVILLSGYSEFEYAQEGIKLGVVNYLLKPITKAKLIEAVEQAL 123 Query: 119 TI 120 + Sbjct: 124 LV 125 >gi|294674046|ref|YP_003574662.1| sensor histindine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294473568|gb|ADE82957.1| sensor histindine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 554 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 24 KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 K Y V NGA A + E+ L+++D++MPEMDGIEL +A + DP+ + I Sbjct: 313 KTTYHVYIARNGAEAIKVIHEKELDLIISDVMMPEMDGIELT-KAVKADPNYNHLPIILL 371 Query: 84 AAVALNPDSNAPKNA---KVLSKPFHLRDL 110 A D + + L KPF L DL Sbjct: 372 TAKTQEEDEKEALQSGADEYLRKPFRLGDL 401 >gi|253575438|ref|ZP_04852775.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845085|gb|EES73096.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 528 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKA---LGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVM 56 M + +L DD+ + R LI+ + G+E+ +N A + V E+ ++ TDI M Sbjct: 1 MEKLKVLIVDDEHLIRNLIRLRIDWEQEGFEITGEASNAQEALELVEEQNPDIIFTDIYM 60 Query: 57 PEMDGIELARRATELDPDLKVMFITG 82 P MDGIEL+RR E P +K++ ++G Sbjct: 61 PNMDGIELSRRVLERYPHIKIVVVSG 86 >gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1778 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED++ L LG GY ++ +G A D + E +L+L DI MP +DG+E Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1720 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 R ++ P + + I A+A+ D A ++KP L+ L ++ +L + Sbjct: 1721 INRIRQI-PTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEILDL 1778 >gi|182415371|ref|YP_001820437.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842585|gb|ACB76837.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 712 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62 IL+ +D++ +R L K Y VV+ +G A + + LLLTD++MP+M G Sbjct: 594 ILVVDDEEPIRDATRHVLVKQNYRVVTATDGKEAVTAFLDQRDNVQLLLTDMMMPQMGGA 653 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R L+P LKV+ +G + A + + + +L KP + L+ + R L Sbjct: 654 ALIRALRLLNPQLKVIATSGLDSHAGDGELAELGLSDILPKPCGPKALIESIQRAL 709 >gi|251798024|ref|YP_003012755.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545650|gb|ACT02669.1| two component transcriptional regulator, AraC family [Paenibacillus sp. JDR-2] Length = 533 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K++L +DD + L + + +V NG +A++ V+EE +L+TDI MP+MD Sbjct: 3 KVMLVDDDYPVIELLSEVVDWEKLGLVLSGKHENGLAAWEHVQEEIPDILVTDIGMPKMD 62 Query: 61 GIELARRATELDPDLKVMFIT 81 G+ELA+R +L+P ++++ ++ Sbjct: 63 GLELAQRVKKLNPSVRIVILS 83 >gi|220915750|ref|YP_002491054.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953604|gb|ACL63988.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 123 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KILL +D + L K+ Y+VV+ +G +K R E L+L D+VMP MDG Sbjct: 3 RKKILLVDDSSTVLLMERMILAKSAYDVVTARDGQEGVEKARAERPDLILMDVVMPRMDG 62 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R R E + V+ +T +A A ++KP + +L+ +V L Sbjct: 63 FEACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRSCL 121 >gi|157373114|ref|YP_001481103.1| nitrogen regulation protein NR(I) [Serratia proteamaculans 568] gi|157324878|gb|ABV43975.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Serratia proteamaculans 568] Length = 470 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG V+ NG + + + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGVSCVTFENGNAVLEALATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|115351650|ref|YP_773489.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria AMMD] gi|115281638|gb|ABI87155.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria AMMD] Length = 860 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 50/84 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ +LL +DD ++ R L +ALG+ GYE++ + A + + ++++D MP + Sbjct: 704 LHRTLLLVDDDREVLRRLRQALGRDGYEILDTTDPDEALVLLAQHRVGVIVSDFRMPSLS 763 Query: 61 GIELARRATELDPDLKVMFITGFA 84 GI+L +R L PD+ + ++G+ Sbjct: 764 GIDLLQRVKALYPDIVRILLSGYG 787 >gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3] gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3] Length = 223 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ R L AL +AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQMDGIT 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T ++ D+ A ++KPFH+ +++ V L+ Sbjct: 62 VVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGAD---DYVTKPFHVEEVLARVRALI 116 >gi|322517326|ref|ZP_08070201.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322124023|gb|EFX95576.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 225 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAED++ + R AL GYEV NG A D + + +++ DI+MP Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNAYQVIIMDIMMPIKT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE + V+ +T A + D+ A L+KP L++L+ + L Sbjct: 61 GIEALKEIRSSGDRTHVIMLTAMAEIDDRVTGLDAGAD---DYLTKPISLKELLARLRSL 117 >gi|239907435|ref|YP_002954176.1| chemotaxis protein CheV [Desulfovibrio magneticus RS-1] gi|239797301|dbj|BAH76290.1| chemotaxis protein CheV [Desulfovibrio magneticus RS-1] Length = 326 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 14/96 (14%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---------EPFS----LL 50 K L+A+D +RR + +L KAG+EV NG A+D++ E P + +L Sbjct: 190 KALIADDSTTIRRMIGTSLEKAGFEVTRTINGRIAWDQLVEWKDAATKENRPITDFCHIL 249 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 ++DI MP MDG L R+ E DP LK + + F+++ Sbjct: 250 VSDIEMPAMDGHSLTRKVKE-DPVLKRLPVILFSSL 284 >gi|237751140|ref|ZP_04581620.1| chemotaxis regulatory protein CheY [Helicobacter bilis ATCC 43879] gi|229373585|gb|EEO23976.1| chemotaxis regulatory protein CheY [Helicobacter bilis ATCC 43879] Length = 124 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 4/82 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 K+L+ +D MRR + L + GYE ++ +G A++++ E ++L+TD MPEM+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLQRLGYEDILEAEHGVEAWNQMSTIEGINVLITDWNMPEMNG 61 Query: 62 IELAR--RATELDPDLKVMFIT 81 +EL + RA E D+ ++ +T Sbjct: 62 LELVKKVRAEEKYKDIPIIMVT 83 >gi|239817228|ref|YP_002946138.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803805|gb|ACS20872.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 230 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 13/121 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++ ED+ D+ + L AGYE +G SA D + P L L DI++P +DGIE Sbjct: 3 RIVIVEDELDIASVVQDYLRHAGYETTHFADGQSALDHLIATPPELTLLDIMLPRLDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV------ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RRA E +M V L D + KPF R+LV V + Sbjct: 63 VLRRAREHTSHPIIMLTARIEEVDRLLGLELGADD-------YVCKPFSPRELVARVRAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|154492207|ref|ZP_02031833.1| hypothetical protein PARMER_01841 [Parabacteroides merdae ATCC 43184] gi|154087432|gb|EDN86477.1| hypothetical protein PARMER_01841 [Parabacteroides merdae ATCC 43184] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + + L +EV+ NG + RE +++TDI+MP++DG Sbjct: 5 RVLLVEDEPTLAMIIKDTLDGEEFEVILAANGEEGLSRYREAKPDIIVTDIMMPKIDGFT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + D + V+F++ +A + L KPF + +L+ + LL Sbjct: 65 MVRHIRKTDRQIPVLFLSARSAANDVVEGFELGGNDYLKKPFGMAELIIRIKALL 119 >gi|153808382|ref|ZP_01961050.1| hypothetical protein BACCAC_02676 [Bacteroides caccae ATCC 43185] gi|149129285|gb|EDM20501.1| hypothetical protein BACCAC_02676 [Bacteroides caccae ATCC 43185] Length = 1307 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 45/65 (69%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ ED+ ++R +LI +L + +V + +N SA + +++ S++++D++MP+MDG Sbjct: 1054 KTVLIVEDEKELREYLISSLTEFFKKVYAADNAVSALEICQKKQPSIIISDVMMPQMDGF 1113 Query: 63 ELARR 67 EL R+ Sbjct: 1114 ELCRQ 1118 >gi|86136783|ref|ZP_01055361.1| response regulator [Roseobacter sp. MED193] gi|85826107|gb|EAQ46304.1| response regulator [Roseobacter sp. MED193] Length = 410 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 45/77 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D RR L+ +L K G++VV +G +A + R++P L+L+D +MP M+G+E Sbjct: 7 RVLVVDDSRLQRRILVASLQKWGFDVVEAESGEAAMEICRKDPPDLILSDWMMPGMNGLE 66 Query: 64 LARRATELDPDLKVMFI 80 + E D FI Sbjct: 67 FCQAFREQSRDNYAYFI 83 >gi|310821786|ref|YP_003954144.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394858|gb|ADO72317.1| Sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 456 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ ED+ +MR L K L + G+ + + A E F +LTD+ MP ++ Sbjct: 1 MPGRILIVEDEREMRAMLEKGLTRRGFTPRALASADEALALSAREDFDTVLTDLQMPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+EL R PD+ V+ +T F ++ + ++KP L LV Sbjct: 61 GLELCERIALNRPDIPVVVVTAFGSLETAVGAMRAGAYDFITKPVDLDALV 111 >gi|237722054|ref|ZP_04552535.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_2_4] gi|229448923|gb|EEO54714.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_2_4] Length = 1332 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1085 LLVVEDTTDMLEFLAKNLGNT-YTIHTATNGKKALEYLETTTVDLIISDIVMPHMDGFEL 1143 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1144 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1198 Query: 118 L 118 L Sbjct: 1199 L 1199 >gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 226 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60 Query: 61 GIELARR 67 G+++ +R Sbjct: 61 GLQVLQR 67 >gi|223041149|ref|ZP_03611403.1| two component transcriptional regulator, winged helix family [Campylobacter rectus RM3267] gi|222877585|gb|EEF12712.1| two component transcriptional regulator, winged helix family [Campylobacter rectus RM3267] Length = 232 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 2/108 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD + L++AL + V +G +A ++ + F++++TDI +P++ G+ Sbjct: 13 KILLVEDDAFLGATLLEALKPYAGKAVLETDGKAALERFFADDFNVVVTDINLPKISGLS 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDL 110 LAR+ E+ ++ ++FIT F + N ++ A+ L KPF L L Sbjct: 73 LARQIKEVGKNVPIIFITAFDS-GHNVEAAIDIGAEAFLHKPFSLERL 119 >gi|257059245|ref|YP_003137133.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256589411|gb|ACV00298.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 715 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D D R L L GY+V SC G A + L+L DI +P+ DG E+ Sbjct: 9 LLIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVTDLILLDIKLPDYDGYEI 68 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR A E + V+F++ A A ++KPF + +++ V L+I+ Sbjct: 69 CRRLKADEQTAHIPVIFLSALNETFDKVQGFAVGGADYITKPFQIEEVLARVATHLSIQ 127 >gi|253700201|ref|YP_003021390.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251775051|gb|ACT17632.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 458 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 53/103 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + + L G++V + +G A D V E L L D+ + DGI Sbjct: 2 EKILIIDDEAFICENVQRILSGEGFQVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E+ + E DP+L V+ ITG+ +V +S + KPF Sbjct: 62 EILKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPF 104 >gi|189467801|ref|ZP_03016586.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM 17393] gi|189436065|gb|EDV05050.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM 17393] Length = 1364 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 43/64 (67%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++++ +L + L + Y +++ NG AYD + + L+++DI+MPEMDG+ Sbjct: 1113 RILIVEDEEEILSYLKEEL-EGDYRIMTRKNGREAYDTILADTPDLVISDIMMPEMDGLS 1171 Query: 64 LARR 67 L R+ Sbjct: 1172 LCRK 1175 >gi|197248989|ref|YP_002149082.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212692|gb|ACH50089.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 441 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD +++AL + GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALFRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|218778021|ref|YP_002429339.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759405|gb|ACL01871.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 683 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + ILL EDD + + L + GY V ++G + + P + L++TD+ MP M Sbjct: 558 ESILLVEDDQQILHMTQQMLERQGYRVDPYDSGIDGLEAFYKNPKKYDLVITDMTMPLMT 617 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA + PD V+ TGF+ + A A L KP + V R+L Sbjct: 618 GDQLAVEIMQKSPDTPVILCTGFSEHISQEQAEALGVAAFLMKPMARNRVAGIVRRVL 675 >gi|154493998|ref|ZP_02033318.1| hypothetical protein PARMER_03343 [Parabacteroides merdae ATCC 43184] gi|218258154|ref|ZP_03474556.1| hypothetical protein PRABACTJOHN_00210 [Parabacteroides johnsonii DSM 18315] gi|154086258|gb|EDN85303.1| hypothetical protein PARMER_03343 [Parabacteroides merdae ATCC 43184] gi|218225747|gb|EEC98397.1| hypothetical protein PRABACTJOHN_00210 [Parabacteroides johnsonii DSM 18315] Length = 243 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI EDD+++ L + L GY ++G + Y + + L + D++MP+ DG Sbjct: 6 KIFFCEDDENLGMLLREYLQAKGYVTDLFSDGEAGYKGFTKGKYDLCVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ ++PD+ V+F+T + L+KPF + +L+ + +L Sbjct: 66 LAQEIRSINPDIPVIFLTAKTMKEDILEGFKIGADDYLTKPFSMEELLLRIEAIL 120 >gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ +R +++ L GYEV + +GA A ++ ++ D++MP MDG+ Sbjct: 2 RVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR ++ +T AVA D L KPF L +L+ V LL Sbjct: 62 MCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALL 116 >gi|99035088|ref|ZP_01314876.1| hypothetical protein Wendoof_01000282 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 102 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 27 YEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA 84 ++V+ + G+ A + + + + L++TD++MPE+ G E+ + A P++ V+FI+G+A Sbjct: 1 FDVIEASIGSEAPEIISKKSQHIDLIITDVIMPEVSGPEIVKEALIHRPNINVIFISGYA 60 Query: 85 AVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A L D ++ L KPF L +L N+V +L Sbjct: 61 EDAFLKSDDINIEDFHFLPKPFTLNELGNKVQSVL 95 >gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Sinorhizobium meliloti 1021] gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ R L AL +AGY V +G + EP+ ++ DI +PEMDGI Sbjct: 2 RILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VLEKWRADGKTMPVLILTARDRWSDKVAGIDAGAD---DYVAKPFHVEEVLARIRALI 116 >gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378] Length = 225 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|303240775|ref|ZP_07327288.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302591663|gb|EFL61398.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 46/78 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ EDD++ R+ + L + GYEV+ +G A +K+ L++ D++MP MDG EL Sbjct: 4 IMVVEDDNNTRKLMEAVLIQNGYEVILAKDGIDALEKMDNHHVDLIVLDLMMPRMDGYEL 63 Query: 65 ARRATELDPDLKVMFITG 82 + + + +L ++ +T Sbjct: 64 SETLRKCNCNLPILMVTA 81 >gi|307725690|ref|YP_003908903.1| response regulator receiver protein [Burkholderia sp. CCGE1003] gi|307586215|gb|ADN59612.1| response regulator receiver protein [Burkholderia sp. CCGE1003] Length = 469 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ + L + L YEV+S N+GA A + ++++D+ MP MDG E Sbjct: 37 LLLVDDEPGVISSLKRLLRPLKYEVLSANSGAEALALLESAQVDVIISDMRMPNMDGAEF 96 Query: 65 ARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ + PD + +TG++ V A+ N L KP+ +DL+ + R L Sbjct: 97 LARSRTMTPDAIRILLTGYSEVDAVVRAVNEGHVYHYLHKPWDDQDLLLTIQRAL 151 >gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 5/120 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ ++L+ EDD D+RR L+ L + Y V + +GA + + E + +++ D+++P + Sbjct: 10 LSMRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLS 69 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E + R T+ P V+ +T AV L+KPF + +L+ + L+ Sbjct: 70 GWEFLQKLRPTKTSP---VLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALI 126 >gi|162660637|gb|EDQ48466.1| predicted protein [Physcomitrella patens subsp. patens] Length = 108 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +RR + L + GY V +G A +++ EE +L+L+DI MP MDG +L Sbjct: 7 VLVVDDSITVRRVTQRLLQREGYRVALAADGLQAMERLAEERPTLVLSDIEMPRMDGFDL 66 Query: 65 AR--RATELDPDLKVMFITGFAA 85 R RA E DL V+ IT A Sbjct: 67 LRNIRADEALRDLPVVMITSRIA 89 >gi|197121057|ref|YP_002133008.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196170906|gb|ACG71879.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 123 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDDD---MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 +KILL +D M R + L K+ Y+VV+ +G +K R E L+L D+VMP Sbjct: 3 RKKILLVDDSSTVLLMERMI---LAKSAYDVVTARDGQEGIEKARAERPDLILMDVVMPR 59 Query: 59 MDGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 MDG E R R E + V+ +T +A A ++KP + +L+ +V Sbjct: 60 MDGFEACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRS 119 Query: 117 LL 118 L Sbjct: 120 CL 121 >gi|124007931|ref|ZP_01692632.1| two-component system response regulator [Microscilla marina ATCC 23134] gi|123986693|gb|EAY26483.1| two-component system response regulator [Microscilla marina ATCC 23134] Length = 232 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ + L + L GY +G + D F L + D+++P+MDG Sbjct: 6 KILLVEDDNNLGQLLQEYLQIKGYPTTLRRDGEAGLDTFHTAGFDLCILDVMLPKMDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLV 111 LA + E + + ++F+T A ++ D+ A + KPF + +L+ Sbjct: 66 LAEKIREQNKKVPIIFLT---AKSMKEDAIKGFKAGADDYIHKPFSMEELL 113 >gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL EDDD + + L G V N +A ++ F +++ D+ +P+ DG++ Sbjct: 2 HVLLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGLPDEDGLK 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR + DL V+ +T AV D L KPF LR+L ++ LL Sbjct: 62 LLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLL 116 >gi|186473153|ref|YP_001860495.1| response regulator receiver protein [Burkholderia phymatum STM815] gi|184195485|gb|ACC73449.1| response regulator receiver protein [Burkholderia phymatum STM815] Length = 706 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+D R+ L + L GY VS ++G A +R LL+TD+ MP M G+EL Sbjct: 464 ILVVDDNDVNRKVLARQLDVLGYRCVSASSGEEALGVLRRGRVDLLITDLQMPGMSGVEL 523 Query: 65 ARR 67 ARR Sbjct: 524 ARR 526 >gi|120556772|ref|YP_961123.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120326621|gb|ABM20936.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 1127 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL +DDD R+ + L G+E+ N + ++V +E +L+L D+ MP G Sbjct: 920 RKILLVDDDDSHRQVIRAMLSPLGFEISDTGNAMTVPERVEQERPNLILLDVSMPGKSGW 979 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNRLL 118 E+ E+ +L V+ ++ A + + AP+ + + KP L L++ + R++ Sbjct: 980 EVLAELREMKYNLPVVMVSADANEG-HHSAEAPRLHDGYIIKPVRLNLLLDTIGRVM 1035 >gi|330971326|gb|EGH71392.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 656 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGI 62 +L+ +D+ +R ++ L G+ + S ++ + P LL+TD+ +P M+G Sbjct: 538 VLVVDDEPTVRMLVMDVLNDLGFSAFEAGDSLSGLKLLQSDVPIDLLITDVGLPGSMNGR 597 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + L ++FITG+A +A L D P A V++KPF + + + LL Sbjct: 598 QLADAARQSRAHLPILFITGYAEIAVLRSDQLEPGMA-VMTKPFSIDLMKKRIQSLL 653 >gi|304404482|ref|ZP_07386143.1| response regulator receiver protein [Paenibacillus curdlanolyticus YK9] gi|304346289|gb|EFM12122.1| response regulator receiver protein [Paenibacillus curdlanolyticus YK9] Length = 203 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DD M R LI+ + ++ G V+ NG A++ R +L D+ MP MDG+E+ Sbjct: 76 LLIVDDQIMIRLLIREVFESEGVRVLDAGNGRDAWELFRRHEVHFVLLDMNMPGMDGVEV 135 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 R +DP +K FI+ + + + +KPF Sbjct: 136 LRGIRRIDPRVKSAFISAYGDPERLEEGERLGALRFFAKPF 176 >gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] Length = 240 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R L +L AG++V++ +G+ A+ + + L++ D+++P+MDG Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T + ++KPF L ++V + +L Sbjct: 75 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAIL 129 >gi|262195489|ref|YP_003266698.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262078836|gb|ACY14805.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 406 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ +DD R + L EV + +G ++ REEP L+L DI++P +DG+ Sbjct: 21 QRVLVVDDDPANLRLVEAYLADLDVEVSTALSGEQGVEQAREEPPHLVLLDIMLPGIDGL 80 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E R RA D+ V+F+T + A + ++KP +L+ V L I Sbjct: 81 EACRRIRAAPRTRDVPVIFMTALSDHARKLEGFGVGGVDYVTKPLDRPELLARVRTHLRI 140 Query: 121 K 121 + Sbjct: 141 Q 141 >gi|260463924|ref|ZP_05812120.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] gi|259030299|gb|EEW31579.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] Length = 138 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +K+++ ED++ +M+ F LI+A +GYE V NG A D R+ L+L DI +P Sbjct: 16 MPKKVMIVEDNELNMKLFRDLIEA---SGYETVRTRNGLEALDLARQHRPDLILMDIQLP 72 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 E+ G+E+ + E D DL V+ + A A+ D + +SKP + + + Sbjct: 73 EVSGLEVTKWLKE-DDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETI 131 Query: 115 NRLL 118 L Sbjct: 132 KSYL 135 >gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1055 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ R + L + G++V + NG A + EPF+L+L D+ MP MDG+E Sbjct: 922 LLLVEDEALARLAIQGMLRREGHDVRTVENGREALTLLAREPFALVLMDVQMPAMDGLEA 981 Query: 65 ARRATELDPDLKVMF--ITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLLT 119 RR + L I A A+ D A ++KP L +L+ ++++L+ Sbjct: 982 TRRIRSGEAGLAAARTPIVAMTAYAMQGDKERFLAAGMDGYVTKPVELGELLAVIDQVLS 1041 >gi|261343461|ref|ZP_05971106.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Providencia rustigianii DSM 4541] gi|282568609|gb|EFB74144.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Providencia rustigianii DSM 4541] Length = 415 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 49/100 (49%) Query: 22 LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 L +AGY V C+N A + V + ++L+D+ MPE GIEL E D L V+ IT Sbjct: 25 LTQAGYRVYECDNPLIAKELVHRDWCGIVLSDVCMPECSGIELMALFLEKDKHLPVVLIT 84 Query: 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 G V + ++ L KP + L+ +V + L + Sbjct: 85 GHGDVPMAVEAVKMGAWDFLQKPINPEYLLTQVEKALAAR 124 >gi|203284656|ref|YP_002222396.1| response regulatory protein [Borrelia duttonii Ly] gi|201084099|gb|ACH93690.1| response regulatory protein [Borrelia duttonii Ly] Length = 451 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+D+ ++R + L + GY V + ++G A + ++ E +++D+ MP++ G E Sbjct: 3 KLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEKIDAIISDLRMPQISGEE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + + +P++ + +T V D+ L+KP L L+ + R L +N Sbjct: 63 LLKIVKDRNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALKKRN 121 >gi|187918615|ref|YP_001884180.1| sigma-54-dependent transcriptional activator [Borrelia hermsii DAH] gi|119861463|gb|AAX17258.1| sigma-54-dependent transcriptional activator [Borrelia hermsii DAH] Length = 451 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+D+ ++R + L + GY V + ++G A + + E +++D+ MP++ G E Sbjct: 3 KLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIENEKIDAIISDLRMPQISGEE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + + +P++ + +T V D+ L+KP L L+ + R L KN Sbjct: 63 LLKIVKDKNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALNGKN 121 >gi|186477108|ref|YP_001858578.1| histidine kinase [Burkholderia phymatum STM815] gi|184193567|gb|ACC71532.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 533 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 N+ IL+ +D ++ L + GY N A D ++E LL TD++MP M Sbjct: 408 NEMILIVDDRVEVAEVAQAMLEQIGYRTRVVLNTKEAMDILQEGAHLDLLFTDLIMPGNM 467 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR A L P +KV+ TG+A ++ ++ KP+ +L +V +L Sbjct: 468 NGVMLAREARRLHPKIKVLLTTGYADASMERTDANGSEFDIIHKPYRRAELARKVRIVL 526 >gi|86159057|ref|YP_465842.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775568|gb|ABC82405.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 131 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 13/125 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ EDD D+ L L AG+ V + +G +A V EE ++L D+ MP M+ Sbjct: 1 MRRSVLVVEDDQDLSSLLEMVLADAGHRVRTAPDGRAALGAVAEEMPGVILLDMRMPVMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRDLVNEV 114 G E AR + + + V + NA A+ L+KPF L D++ V Sbjct: 61 GWEFAR-------EFRARYGRACPIVVVTAAENARLRAEEIGAEDWLAKPFDLDDVLYTV 113 Query: 115 NRLLT 119 R L Sbjct: 114 ERQLA 118 >gi|91788331|ref|YP_549283.1| CheA signal transduction histidine kinase [Polaromonas sp. JS666] gi|91697556|gb|ABE44385.1| CheA signal transduction histidine kinase [Polaromonas sp. JS666] Length = 772 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 9/120 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED R L L AGY+V + +G A+ +R E F LL++D+ MP ++G +L Sbjct: 656 VLIAEDSITSRMLLKSILESAGYDVKTAVDGMDAFTLLRAEKFDLLVSDVEMPRLNGFDL 715 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLL 118 RA + +L V+ +T A+ D +A NA ++ F +L+ V RL+ Sbjct: 716 TAKIRADKRLAELPVVLVT---ALETREDRERGIDAGANAYIVKSSFDQSNLIEAVRRLI 772 >gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + + V+ +T ++ + L KPFH+ +L+ +N L+ Sbjct: 62 LIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALV 116 >gi|315923749|ref|ZP_07919981.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622964|gb|EFV02913.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 222 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L AED D+ R + AL AGYEV S +G A ++ + + + DI+MP + G+ Sbjct: 2 KLLFAEDTTDLNRVVTMALVHAGYEVDSVMDGQKALSHLQTQVYDAAILDIMMPGLSGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ +T A V L KPF L++L+ V ++ Sbjct: 62 VTERIRAAGDTTPILLLTAKAEVDDRVTGLEAGADDYLPKPFALKELMARVKAMI 116 >gi|298481664|ref|ZP_06999855.1| sensor histidine kinase/response regulator [Bacteroides sp. D22] gi|298272205|gb|EFI13775.1| sensor histidine kinase/response regulator [Bacteroides sp. D22] Length = 1348 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD+++R ++ K G + ++ NG A +++ ++ L+++DI+MPEMDG L Sbjct: 1094 VLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGFTL 1152 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R+ + + +L + + A D+ N +A ++ KPF++ L V L+ Sbjct: 1153 CRKIKQ-NVNLNHIPVILLTAKTREEDNLEGLNTGADAYIM-KPFNIEILQKTVENLINT 1210 Query: 121 K 121 + Sbjct: 1211 R 1211 >gi|295134054|ref|YP_003584730.1| two-component response transcriptional regulator [Zunongwangia profunda SM-A87] gi|294982069|gb|ADF52534.1| two-component response transcriptional regulator [Zunongwangia profunda SM-A87] Length = 438 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD DM L + L + ++ A + ++ LL+TD+ MP++DG EL Sbjct: 8 ILIVDDDFDMLELLQRQLQDQNFHAYKASSVLEAINILKYSRIDLLVTDLQMPQVDGREL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A++ P L + ITGF ++ ++ L KPF +L N V + L Sbjct: 68 IKYASDHYPALPTLVITGFPSIDGALEAMRSGAIDYLIKPFTKEELKNAVVKAL 121 >gi|289668759|ref|ZP_06489834.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 456 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q++L+ EDD+ +R + + L + GY+ + +A + LL+TD+ +P ++G Sbjct: 336 QQVLVVEDDEQVRLLVTELLSELGYQADVVADADAALPILASPRQIDLLVTDVGLPGLNG 395 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 396 RQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVL 452 >gi|283834149|ref|ZP_06353890.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC 29220] gi|291070299|gb|EFE08408.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC 29220] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + LL+ DI++P+++G + Sbjct: 2 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + ++ +T + L KPF +L+ V LL Sbjct: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 11/121 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I+L ED+ ++ + + L AG+EV ++G AYD + SL++ D+++P MDG+ Sbjct: 2 KHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSFTQRKPSLMILDLMVPRMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ E DL ++ +T + LN ++ + KPF ++LV V + Sbjct: 62 TICRKVRE-QSDLPIIMVTARTEEIDRVLGLNMGAD-----DYVCKPFSPKELVARVQAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 236 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GIELARR 67 G+++ +R Sbjct: 71 GLQVLQR 77 >gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 667 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL AED + L L K E V CNNG + E + L+L DI MP MDG+ Sbjct: 538 RILAAEDIFANQILLKHLLEKWEAEFVICNNGKEVLHMLETEDYDLILMDIQMPVMDGVT 597 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ P + V+ +T P+ A + ++KPF +L+ +N+ L + Sbjct: 598 AMKKIQSSYPRHHHVPVIALTADTFAEKTPEIAACNFSGFVTKPFKAEELIRAINKHLKV 657 Query: 121 K 121 K Sbjct: 658 K 658 >gi|289826730|ref|ZP_06545695.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 437 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|307153462|ref|YP_003888846.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983690|gb|ADN15571.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 645 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D L+ L AG++VV +G SA + V P L+L DI+MP +DG E Sbjct: 10 ILIVDDTPTNLEMLLDILEDAGFKVVVAEDGESAIEMVEYAPPDLILLDILMPRLDGFET 69 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 RR + D+ ++F+T ++KPF +++ +N L ++N Sbjct: 70 CRRLKSNPKTADIPIIFMTALIDNVEKLKGLNLGAVDYVTKPFEHEEVLARINIHLRLQN 129 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 +LL +D+ +R L Y+V++ NNG A + E SL+L DI+MP M G Sbjct: 522 LLLVDDEAGIRETTKILLENYNYQVLTANNGIEAIELYAQYEHKVSLVLMDIMMPAMGGD 581 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R +++P++K++ I+G + K L KP+ ++L++ ++ +L+ Sbjct: 582 TAIRTLQKMNPEVKIIGISGLISSEKLSQEMKMKTQAFLPKPYTAQELLHTIDLILS 638 >gi|158522185|ref|YP_001530055.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfococcus oleovorans Hxd3] gi|158511011|gb|ABW67978.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfococcus oleovorans Hxd3] Length = 474 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 14/126 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N I++ +D +RR + L AG++VV+ NG A + +R+ P L+L+DI MP M+G Sbjct: 132 NHLIMVVDDSPTIRRIVENGLTAAGFKVVTAENGRHALEVLRDTPPDLILSDIDMPVMNG 191 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPK--------NAKVLSKPFHLRDLVNE 113 +E DP +G + ++ S+ A + KPF++ LV + Sbjct: 192 LEFC-ETIHADPAF-----SGIPFIVMSAKSDRGHMNRMVQHGAASYVCKPFNMDALVIQ 245 Query: 114 VNRLLT 119 + L+ Sbjct: 246 IEETLS 251 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 12/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +RR LIK L NG A+D + F +++TDI MP MDGIEL Sbjct: 9 ILVIDDSAAIRRRLIKLLEPLNASFEEAENGQQAWDMITTTRFDVVITDIDMPVMDGIEL 68 Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 RR E + V+ ++ +L+ + N K +V ++K DL N V L Sbjct: 69 CRRMRNNEQTRSIPVVVVS-----SLDSEENIEKGFEVGATYYIAKNDVYTDLFNVVEEL 123 Query: 118 LT 119 L+ Sbjct: 124 LS 125 >gi|332881353|ref|ZP_08449003.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680729|gb|EGJ53676.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1328 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED++ +R F+ + L + V + +NG A D +R+E L+++D++MPEM+G EL Sbjct: 1056 ILIVEDEESIRNFMKERLSPL-FIVETASNGKEALDIIRKEHIDLVISDVMMPEMNGYEL 1114 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 T + D+ + I A N + K KV + KPF L ++ LL Sbjct: 1115 ---CTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLL 1170 >gi|320102736|ref|YP_004178327.1| Fis family sigma-54 specific transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319750018|gb|ADV61778.1| sigma54 specific transcriptional regulator, Fis family [Isosphaera pallida ATCC 43644] Length = 477 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 48/83 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL A+D+ +R + L + G+EV ++G SA + F L + DI MP ++GIE Sbjct: 10 RILFADDEAHLRDVMRLELPRLGHEVTVHSDGESAVRAAEKSSFDLAILDIRMPGLNGIE 69 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + R + P+ +V+ +TG A++ Sbjct: 70 VLERIKKSSPETQVVLLTGQASL 92 >gi|300742621|ref|ZP_07072642.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567] gi|300381806|gb|EFJ78368.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567] Length = 247 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 62/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L+ +D++ ++ + L G+EV S +G +A R+ +L+ DI+MP DG+E Sbjct: 24 RALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPAALAIARDWRPDVLVLDIMMPGFDGLE 83 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + P++ +F+T +V + A ++KPF + +++ ++RL+ Sbjct: 84 LLDRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLV 138 >gi|262039194|ref|ZP_06012514.1| chemotaxis protein CheY [Leptotrichia goodfellowii F0264] gi|261746810|gb|EEY34329.1| chemotaxis protein CheY [Leptotrichia goodfellowii F0264] Length = 120 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + L+A+D +R + L GYEV +G A++ ++ +++ DI MP + Sbjct: 1 MTKTALVADDASYIREDIKDILEDQGYEVYEAADGMEAFEMYKKVKPTIVTMDINMPRVH 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 GI+ + T+ DP KVM + AK LSKPF + +NE+++L Sbjct: 61 GIKATQLITDYDPQAKVMLCSTMITFQNYIKMGKEAGAKGFLSKPFTDEEFMNELSKLF 119 >gi|259417672|ref|ZP_05741591.1| response regulator receiver modulated serine phosphatase [Silicibacter sp. TrichCH4B] gi|259346578|gb|EEW58392.1| response regulator receiver modulated serine phosphatase [Silicibacter sp. TrichCH4B] Length = 423 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D RR L+ +L K G++VV G A D R +P L+L+D +MP M+GI Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFDVVEAEGGEEAMDICRADPPDLILSDWMMPGMNGI 78 Query: 63 ELAR 66 + R Sbjct: 79 DFCR 82 >gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676] gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676] Length = 226 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60 Query: 61 GIELARR 67 G+++ +R Sbjct: 61 GLQVLQR 67 >gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 228 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 54/117 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++L+ EDD + F++K L + GY V +G + + + DI++PE+DG Sbjct: 5 TMRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L RR + V+F++ A+V L+KPF +L + L+ Sbjct: 65 LSLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALI 121 >gi|197119775|ref|YP_002140202.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197089135|gb|ACH40406.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 453 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GY+V + +G + E ++++TD+ MP Sbjct: 1 MPAKILVIDDDSSLRRVLEYNLQQEGYDVYTAADGDAGLQLFAERLPAVVITDLKMPGKS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ E P V+ +T F A+ ++ L+KPF+ +L V + L + Sbjct: 61 GFEVLSAIKESSPATVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKALQL 120 Query: 121 KN 122 + Sbjct: 121 QG 122 >gi|332652740|ref|ZP_08418485.1| two-component response regulator [Ruminococcaceae bacterium D16] gi|332517886|gb|EGJ47489.1| two-component response regulator [Ruminococcaceae bacterium D16] Length = 246 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ ED++ +R+ ++ A+ A + V +NG +L++TD+ MP+MD Sbjct: 3 KVLVVEDEEMIRKGIVLAVDWAALDCVVVGEASNGEEGLQAAERYAPTLIITDLKMPKMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE+ RR E + V+ +T + + A + L KPFH +L V L Sbjct: 63 GIEMLRRLREAGNNAFVIILTAYDSFAYAQSALRLGAVDFLLKPFHDGELEQAVQAL 119 >gi|319952622|ref|YP_004163889.1| two component, sigma54 specific, transcriptional regulator, fis family [Cellulophaga algicola DSM 14237] gi|319421282|gb|ADV48391.1| two component, sigma54 specific, transcriptional regulator, Fis family [Cellulophaga algicola DSM 14237] Length = 450 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 54/108 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + L + L K GY+V + A K + F +++TD+ +P DGIE Sbjct: 3 RILIIEDDAAFCQMLQRFLAKKGYDVEASFTAEDAKKKFKGGDFDMVITDLRLPNYDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L ++ + V+ +T +A V+ + +SKPF ++V Sbjct: 63 LLSDIKAINSKIPVLVMTSYAEVSTAVTAMKKGAFDYISKPFTPEEMV 110 >gi|308274524|emb|CBX31123.1| Acetoacetate metabolism regulatory protein atoC [uncultured Desulfobacterium sp.] Length = 478 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 59/115 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DDD +R +K L + GY V +G + + V+ + +++ D+ +P M+G E Sbjct: 4 ILIIDDDDQLRNSFVKLLTEEGYNVDQAASGEAGVNIVKNKAPDIVILDMRLPGMNGFET 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R E++P L V+ +T F ++ + KPF + +++ + + L+ Sbjct: 64 FRAIHEVEPRLPVIIMTAFGTTDTAIEATKLGAFDYILKPFDIPAMLSLIKQALS 118 >gi|167949555|ref|ZP_02536629.1| Signal transduction histidine kinase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 177 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + L L + G+ V +G A + ++ E F L D+ MP MDG E Sbjct: 67 RILLAEDNAIAAKVLFTLLQQKGHRVCIARDGQEALELLQAEQFHLAFVDLRMPRMDGFE 126 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 L RR +L+ + + + I A NAP++ + D +N+ Sbjct: 127 LTRRYRQLESETEHLPILALTA-------NAPEDVLQQCSEVGMDDFLNK 169 >gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 985 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 41/81 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED R L L GY+ NG A E PF ++LTD+ MPE+DG Sbjct: 748 RVLVAEDHPASRALLRDQLDALGYDATIMTNGIEAMRAYFEHPFDVVLTDLGMPELDGFA 807 Query: 64 LARRATELDPDLKVMFITGFA 84 LAR E + V+ +T A Sbjct: 808 LARFLREQGAKVPVIAMTAHA 828 >gi|163746232|ref|ZP_02153590.1| nitrogen regulation protein [Oceanibulbus indolifex HEL-45] gi|161380117|gb|EDQ04528.1| nitrogen regulation protein [Oceanibulbus indolifex HEL-45] Length = 459 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + ++ + V E +++D++MP+ + Sbjct: 1 MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVSEGKGDAVISDVIMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIKAAEAEAFDYLPKPFDLPDLMKRTARAL 118 >gi|160933606|ref|ZP_02080994.1| hypothetical protein CLOLEP_02460 [Clostridium leptum DSM 753] gi|156867483|gb|EDO60855.1| hypothetical protein CLOLEP_02460 [Clostridium leptum DSM 753] Length = 229 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ R + + GYE C +GA+A +V E + L+L D+++P MDG E Sbjct: 14 EILIVEDDPNIARTIEVTISLVGYECRICGDGAAAVQEVLEHDYDLVLLDVMLPGMDGFE 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ V+F+T V + KPF +L+ + +L Sbjct: 74 VIQKIQ--SKGTPVIFLTALQDVTDKVKGLRLGAEDYIVKPFEAVELLARIEVVL 126 >gi|83859913|ref|ZP_00953433.1| sigma-54 dependent DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852272|gb|EAP90126.1| sigma-54 dependent DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] Length = 498 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +DD RR + L K G+ + +G + ++V+ +++ D+VMP MD Sbjct: 1 MAKTVLIVDDDPTQRRLMQAVLEKQGHLAETAEDGEAGLERVKRGGVDVVMLDMVMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 GIE +PDL V+ +T + Sbjct: 61 GIETLEAIKARNPDLPVIVLTAHGGI 86 >gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 236 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GIELARR 67 G+++ +R Sbjct: 71 GLQVLQR 77 >gi|327399108|ref|YP_004339977.1| putative two component sigma54 specific transcriptional regulator [Hippea maritima DSM 10411] gi|327181737|gb|AEA33918.1| putative two component, sigma54 specific, transcriptional regulator [Hippea maritima DSM 10411] Length = 386 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 42/83 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD+ MR L L GY + A +++ F +L+D+ MP+MDG+E Sbjct: 3 KILVVDDDEQMRVALKATLDHLGYNPTLAKDAKEALKLLKKNEFDFILSDLKMPKMDGVE 62 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + + P + + IT F + Sbjct: 63 FLKEVKNIKPHIPFVMITAFGDI 85 >gi|325111286|ref|YP_004272354.1| histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324971554|gb|ADY62332.1| histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 567 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK--VREEPFSLLLTDIVMPEMD 60 + IL A+DD+ R + A+ AG+ V ++G A + + + LL+ D MPE Sbjct: 438 RTILFADDDEISRMIAVNAMESAGHHVFEASDGQEAIKQFLMHRDEVELLVLDAEMPEKS 497 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G+ R T +L ++ TG +A L ++ P+NA ++ KPF Sbjct: 498 GLNAYREITAAGFELPLILCTGHSAATL--EAALPENAILIQKPF 540 >gi|296156875|ref|ZP_06839712.1| GAF sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295892761|gb|EFG72542.1| GAF sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 596 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q +L+A+DD RR +G+ GY+V + G A + +R PF + + DI MP+++G Sbjct: 463 DQLVLIADDDGVSRRVTQALIGRLGYQVEGVSTGRGALELLRTRPFDVAVLDINMPDLNG 522 Query: 62 IELARRATE 70 + LAR E Sbjct: 523 LALARELHE 531 >gi|294677644|ref|YP_003578259.1| response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294678384|ref|YP_003578999.1| response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294476464|gb|ADE85852.1| response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294477204|gb|ADE86592.1| response regulator receiver protein [Rhodobacter capsulatus SB 1003] Length = 131 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+D++ L LG+ G + G A +++R E L+L D+++PE+ G E Sbjct: 10 RVLIVEDEDNIAIALDYLLGREGLDHARLATGLGAVERIRAERPDLVLLDVMLPEVSGYE 69 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + RA ++++ +T + + A ++KPF L++L +E++RLL Sbjct: 70 ICQQVRADGALAGVRIVMMTARGSALERRKALALGADGFIAKPFELKELRDELHRLL 126 >gi|283787323|ref|YP_003367188.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282950777|emb|CBG90453.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 441 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 42/82 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +K F L+L D+ M EMDGIE Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMAEMDGIET 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 R L+P + V+ +T F++V Sbjct: 68 LREIKALNPAIPVLIMTAFSSV 89 >gi|322419691|ref|YP_004198914.1| CheA signal transduction histidine kinase [Geobacter sp. M18] gi|320126078|gb|ADW13638.1| CheA signal transduction histidine kinase [Geobacter sp. M18] Length = 749 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED R L L AGY+V++ +GA A +++ E L+++DI MP MDG +L Sbjct: 632 VLVAEDSITSRTLLRNILESAGYQVLTAVDGADALTQLKTERCDLVVSDIEMPRMDGFQL 691 Query: 65 --ARRATELDPDLKVMFITGF 83 A RA L V+ +TG Sbjct: 692 TAAIRADSRLASLPVILVTGL 712 >gi|238796257|ref|ZP_04639767.1| Signal transduction histidine kinase [Yersinia mollaretii ATCC 43969] gi|238719950|gb|EEQ11756.1| Signal transduction histidine kinase [Yersinia mollaretii ATCC 43969] Length = 1131 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D R +++ L G+EV+ NGA R E F +++TD MP MDG +L Sbjct: 892 ILIVDDYLPNRMLMLQQLNYLGHEVMDAENGAVGLKLWRSEHFDVVITDCNMPVMDGYQL 951 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA----KVLSKPFHLRDL 110 A+ R E + LK I GF A + P+ A A L KP L++L Sbjct: 952 AKGIRQAESEQGLKPCLIFGFTA-NVQPEERANCLAAGMDDCLFKPISLKEL 1002 >gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 248 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ ED++++R + L + GYEV + NG +D L+L D++MP+ D Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMPKKD 68 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + ++ ++ +T + + D ++KPF R+LV Sbjct: 69 GWELCEEIRQ-QSNVPIIMLTAKGEERDRILGLTIGADD-------YVTKPFSPRELVLR 120 Query: 114 VNRLL 118 V +L Sbjct: 121 VQIIL 125 >gi|223937926|ref|ZP_03629825.1| integral membrane sensor hybrid histidine kinase [bacterium Ellin514] gi|223893327|gb|EEF59789.1| integral membrane sensor hybrid histidine kinase [bacterium Ellin514] Length = 667 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-----KVREEPFSLLLTDIVMPE 58 +IL +D+ + L L AG+ V +NG A + K R E F ++LTD+ MP+ Sbjct: 538 RILCVDDEAPVLDVLRIILQSAGHTVEGASNGFGALEAFRSAKARNESFDVVLTDLGMPK 597 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRL 117 MDG ++A+ E V+ +TG+ + + + N P VLSKP + +L + +L Sbjct: 598 MDGRQVAKLIKEESHGTPVIMLTGWGDI-MKVEGNHPDQIDVVLSKPPQVNELFLALRKL 656 >gi|217976450|ref|YP_002360597.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217501826|gb|ACK49235.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 231 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +G++A D ++ +P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEGEGYRVQTYTDGSTALDGLKSDPPDLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIRKPFSQRLLVERVKAI 115 Query: 118 LTIKN 122 L N Sbjct: 116 LRRAN 120 >gi|194442721|ref|YP_002043422.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401384|gb|ACF61606.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 441 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|86157349|ref|YP_464134.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773860|gb|ABC80697.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 462 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 53/106 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R+ L G+EV+ ++GA A ++ E +++D+ MP++DGI L Sbjct: 9 VLVVDDDPGTRKVARANLSLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R L P L V+ +T A V ++ L+KP +L Sbjct: 69 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDEL 114 >gi|328953287|ref|YP_004370621.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] gi|328453611|gb|AEB09440.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] Length = 116 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D++ +R +L + L +AGYEV+ + A + + +L++ DI MP M G+ Sbjct: 2 KRILVVDDEEPIRSYLKEELTEAGYEVLVAASAPEALKIIEHQDLNLVILDIRMPGMTGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E R L L V+ T ++ + + A NA V+ K F L +L ++ L+T Sbjct: 62 EALPRILGLKEHLPVILNTAYSQYQQDFMAWA-ANAYVI-KSFDLTELKEKIRELIT 116 >gi|320354436|ref|YP_004195775.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320122938|gb|ADW18484.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 451 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED R+ + L + GY VV +G A KV EE L++ D+++P+MDG ++ Sbjct: 336 ILVVEDSSTTRKVIAITLSRQGYRVVEAADGLEALSKVSEERPDLIMLDVILPKMDGYKI 395 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + + D+ V+ +T ++ L+KPF ++ E+ + Sbjct: 396 LSIIKGNKEFKDIPVIMLTSKDGFISKMKGKMAGSSAYLTKPFDPDKMIAEIKK 449 >gi|317403323|gb|EFV83837.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 239 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 I L EDD D+R L LG G+ V +C+N A+ Y +++E+P +++ D +P DG Sbjct: 10 IGLLEDDADLREELALGLGGYGFRVAFACDNAAAFYRRLQEQPCDIVILDAHLPGEDGFS 69 Query: 64 LARRATELDPDLKVMFITGFAAV 86 +A R L P + ++ +TG +A+ Sbjct: 70 VATRLRALSP-VGIVMLTGRSAL 91 >gi|302335993|ref|YP_003801200.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301319833|gb|ADK68320.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 228 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 11/122 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LLA+D+ ++ + L+ L AGYEV + +G A K+ + L++ DI+MP++DG+ Sbjct: 4 KRLLLADDERELSQALVAILRHAGYEVDASPDGEDALYKLNVNGYDLVILDIMMPKVDGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R E ++ V+ +T A + L+ +N L KPF ++L+ + R+ Sbjct: 64 TVLRTLREEGHEVPVLLLTARAEIDDRVCGLDAGAN-----DYLVKPFAAKELLARI-RV 117 Query: 118 LT 119 LT Sbjct: 118 LT 119 >gi|282895905|ref|ZP_06303945.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281199150|gb|EFA74019.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 369 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D D + L GY + S ++GA+A K + P L+L D++MPEMDG E Sbjct: 11 RILVVDDIRDNLILVRTLLESEGYAIDSVSDGATALQKTVQSPPDLILLDVMMPEMDGYE 70 Query: 64 LAR--RATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + R R+ + ++ IT F ++V D+ A + KPF +L+ V LL Sbjct: 71 VTRTIRSYTNIGYVPILLITAFDESSVVEGLDAGAD---DFIRKPFDTNELLARVRCLLR 127 Query: 120 IKN 122 +K+ Sbjct: 128 LKH 130 >gi|300770271|ref|ZP_07080150.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762747|gb|EFK59564.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 231 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QKILLAEDD ++ L L K ++V C +G A ++ + L + D++MP+ DG Sbjct: 5 QKILLAEDDPNLGELLKDYLELKGKFDVTLCQDGEEALVAFHKDQYDLCILDVMMPKKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + + + V++ T + + ++KPF + +L+ +N LL Sbjct: 65 FSLGKDIRKTNTTVPVIYATAKGMMEDKTQAFELGGDDYITKPFRVEELLLRINALL 121 >gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 236 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GIELARR 67 G+++ +R Sbjct: 71 GLQVLQR 77 >gi|187934471|ref|YP_001885003.1| sporulation initiation phosphotransferase F [Clostridium botulinum B str. Eklund 17B] gi|187722624|gb|ACD23845.1| chemotaxis protein CheY [Clostridium botulinum B str. Eklund 17B] Length = 119 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K +E+V +NGA A + ++E ++ DI MP++DGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNDFEIVGEASNGAVAVEMYKKEKPDVVTMDITMPDVDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ DP+ K++ + ++ D+ + KPF ++ + ++L Sbjct: 63 EAVKQIKAFDPNAKIIMCSAMGQQSMVMDAIRAGAKDFIVKPFQADRVLEAIKKVL 118 >gi|168467894|ref|ZP_02701731.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629026|gb|EDX48418.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 441 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD +++AL + GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALFRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|182418785|ref|ZP_02950053.1| chemotaxis protein CheV [Clostridium butyricum 5521] gi|237667698|ref|ZP_04527682.1| chemotaxis protein CheV [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377384|gb|EDT74943.1| chemotaxis protein CheV [Clostridium butyricum 5521] gi|237656046|gb|EEP53602.1| chemotaxis protein CheV [Clostridium butyricum E4 str. BoNT E BL5262] Length = 304 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 14/128 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKV------REEPF----SLLLT 52 K++LA+D +RR L + L KAG++ ++ N+G A+D + R E F +L+T Sbjct: 172 KLVLADDSALIRRLLKETLSKAGFKSMTVFNDGKQAFDYIVGLKDRRGEEFLEDVDILIT 231 Query: 53 DIVMPEMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 DI MP++DG+ L R+ E+ L V+ + L + K LSKP + L Sbjct: 232 DIEMPQLDGLTLTRKIKEDEVMKKLPVIIFSSLITEELRHKGESVKADAQLSKP-EIEAL 290 Query: 111 VNEVNRLL 118 V+ +++L+ Sbjct: 291 VDVIDKLI 298 >gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 229 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILL ED++ + +FL + L GYEV +G + K RE L++ D ++P + Sbjct: 6 MSTQILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPRLS 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GIE+ RR + ++ +T V+ DS A N ++ KPF L + + V Sbjct: 66 GIEICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGA--NDYII-KPFSLEEFLARV 119 >gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1005 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ R L + L G+E V NG A + +RE F +L DI MPE+DG+E Sbjct: 882 KVLVAEDEAVNRMTLSRCLHHLGHEAVCVTNGLEAVEALREGRFDCVLMDIQMPELDGLE 941 Query: 64 -LARRATELDPDLKVM-FITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 LAR E + + + A A+ D A + + KP L +L + RL Sbjct: 942 ALARIRAEAGEQARALPPVVALTAHAMEGDRERFLAAGMSAYIPKPIELGELERVLLRL 1000 >gi|116621160|ref|YP_823316.1| two component sigma54-specific Fis family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224322|gb|ABJ83031.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Solibacter usitatus Ellin6076] Length = 476 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD R + + + GY V + +G A D++ P + +LTD+VMP MD Sbjct: 1 MPAHILVVDDDAQQRSDMAEMVRSLGYHVTTAADGREALDRLASAPANAILTDLVMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L + + +TGF ++ Sbjct: 61 GMALLKELVSRGDRTPTVVLTGFGSI 86 >gi|298246006|ref|ZP_06969812.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] gi|297553487|gb|EFH87352.1| response regulator receiver protein [Ktedonobacter racemifer DSM 44963] Length = 128 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD + L +AL GYE YD ++E L+L D++MP +D Sbjct: 1 MAKKILVMDDDPTIADLLTEALADEGYETFMTTQSLRFYDSIQEHKPDLVLLDLMMPYLD 60 Query: 61 GI-ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRL 117 G EL +D + V+ +T F A N + + ++ KPF L LV V + Sbjct: 61 GRDELKLMTMGIDKQIPVIVVTAFLGAA-NEEQEFREAGVVHIVYKPFDLDKLVALVKQT 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|283850231|ref|ZP_06367520.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] gi|283574257|gb|EFC22228.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] Length = 121 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 9/123 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL +D +R + + L AG+++V +GA A +KV + L++TDI MP M G Sbjct: 3 EKRILTVDDSGSVRSLVSRTLLDAGFDIVEAVDGADALEKV-GDGVDLVITDINMPNMGG 61 Query: 62 IEL-----ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 IEL AR T+ P ++ +T + L + A + KPF LV V R Sbjct: 62 IELLARLRARPETKFIP---ILVLTTESQRGLRDRAVAAGATGWIVKPFAPASLVALVRR 118 Query: 117 LLT 119 LT Sbjct: 119 FLT 121 >gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407] gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407] gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC H10407] Length = 240 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL EDD D+ L L GY++V +GA + + ++ + +L D+++P +DG+ Sbjct: 5 KKILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPNVDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L V+ I+ + L KPF +++L+ V L Sbjct: 65 EICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALF 120 >gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 869 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 5/120 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++LLAEDD+ + + K L KAGY V NG A D + F +L DI MP M G Sbjct: 740 NGRVLLAEDDEVTQFAVRKLLEKAGYTVSIARNGEEALDLLGAHDFDAVLMDIQMPVMGG 799 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 IE R R++ + + I A A+ D +A + ++KP + +L + R Sbjct: 800 IEATRLIRSSATPEAKRSIPIIALTAYAMAGDREKFLDAGMNDYIAKPVQVVELKKALER 859 >gi|253752566|ref|YP_003025707.1| response regulator protein [Streptococcus suis SC84] gi|253754392|ref|YP_003027533.1| response regulator protein [Streptococcus suis P1/7] gi|253756326|ref|YP_003029466.1| response regulator protein [Streptococcus suis BM407] gi|251816855|emb|CAZ52502.1| response regulator protein [Streptococcus suis SC84] gi|251818790|emb|CAZ56630.1| response regulator protein [Streptococcus suis BM407] gi|251820638|emb|CAR47398.1| response regulator protein [Streptococcus suis P1/7] Length = 429 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 46/93 (49%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 V + N A D + L+LTD+ MP+M G+E+ RR E PD ++ ++GF Sbjct: 31 VYTAENAEEALDYFSQHTVDLVLTDVSMPDMTGLEMVRRMKEQSPDTHIIIMSGFQEFEY 90 Query: 89 NPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + L KP + ++L + +L T+K Sbjct: 91 ARKAISLGAMDYLLKPINKQELAKLLQQLPTLK 123 >gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 624 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAED+ + ++ + L G+EVV + G A + +R++ F +L DI MPEMDGIE Sbjct: 376 VLLAEDNPINQIYVQELLEMDGHEVVVAHTGRRALEALRKKRFDAVLMDIQMPEMDGIEA 435 Query: 65 AR-----RATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNR 116 R + + DP + ++ +T A AL D A + LSKP DL + R Sbjct: 436 TRAIRSDASGDFDPAIPIVALT---AHALKGDRETFLRAGMNEYLSKPVSPADLEAALGR 492 Query: 117 L 117 + Sbjct: 493 V 493 >gi|189466713|ref|ZP_03015498.1| hypothetical protein BACINT_03088 [Bacteroides intestinalis DSM 17393] gi|189434977|gb|EDV03962.1| hypothetical protein BACINT_03088 [Bacteroides intestinalis DSM 17393] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 54/111 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL A+DD L + L K GYEV NG+ A ++ L+L DI MP +G E Sbjct: 5 KILFADDDLKYSMLLKRFLEKEGYEVTYAGNGSIAIEQFPLVKPDLVLLDINMPGHNGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +A R E D + + F++ + A + L+KPF+ +L+ + Sbjct: 65 VAERIRETDKHVLIFFLSDRSDKADRLQGFQLRANDYLAKPFYPEELIARI 115 >gi|94969947|ref|YP_591995.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94551997|gb|ABF41921.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 126 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 5/83 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + L+ +D MR+ + ++L +AG +V+ NGA A + +R P L+L+DI MP MD Sbjct: 5 RALIIDDSSVMRKIVERSLRQAGVALSQVMEAGNGAEALNLLRSNPVDLILSDINMPVMD 64 Query: 61 GIELARR--ATELDPDLKVMFIT 81 G+E RR A L + V+ IT Sbjct: 65 GLEFVRRLKAEGLAANAPVVMIT 87 >gi|94265541|ref|ZP_01289288.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453941|gb|EAT04291.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 231 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 19/130 (14%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ +IL+ +DD M R + + G+ V S +G SA + F L++ D+ +P+ Sbjct: 1 MNRTRILVVDDDPSMLRLCQVVIQRQGWLVESAQDGGSAEGLLATRSFDLVVLDLNLPDG 60 Query: 60 DGIELARRATELDPDLKVMF--------ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 DG+++ RR + +M + GF A A L+KPFH +LV Sbjct: 61 DGLDVGRRLHQQGVPFLLMTARDRPNERVAGFEVGA----------ADYLTKPFHPNELV 110 Query: 112 NEVNRLLTIK 121 + + R+L ++ Sbjct: 111 HRIRRVLGLR 120 >gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301] Length = 229 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D++ + + L + GY+V ++G + +P+ LL+ D ++PE G++ Sbjct: 2 RILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + D + V+F+T V L KPF L++L+ V LL Sbjct: 62 LCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALL 116 >gi|16762283|ref|NP_457900.1| transcriptional regulator ZraR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143771|ref|NP_807113.1| transcriptional regulator ZraR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213022036|ref|ZP_03336483.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161649|ref|ZP_03347359.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213423580|ref|ZP_03356560.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428476|ref|ZP_03361226.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580343|ref|ZP_03362169.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612381|ref|ZP_03370207.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647189|ref|ZP_03377242.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855078|ref|ZP_03383318.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|20140998|sp|Q8Z333|ZRAR_SALTI RecName: Full=Transcriptional regulatory protein zraR gi|25301132|pir||AD0931 transcription regulatory protein STY3711 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504587|emb|CAD09470.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139406|gb|AAO70973.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 441 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|332345860|gb|AEE59194.1| nitrogen regulation protein NR(I) NtrC [Escherichia coli UMNK88] Length = 469 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAVVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 230 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+A+D+ D+R+ L L GYEVV+ NG A + + +E L++ D+ MP+ Sbjct: 1 MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIE-LMDESIGLVILDVEMPKKS 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + R P ++F+T + + + ++KPF DL+ V LL Sbjct: 60 GIVVCSEIRQKSFVP---ILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALL 116 >gi|317476823|ref|ZP_07936066.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316906998|gb|EFV28709.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1420 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ + Y V +GA A + + +++D++MP MDGIEL Sbjct: 1169 ILVVEDNADMRGY-IRSILRDKYNVFEAAHGAEALNILNSHSVDFIISDLMMPVMDGIEL 1227 Query: 65 ARRATE 70 +RR E Sbjct: 1228 SRRVKE 1233 >gi|315647817|ref|ZP_07900918.1| two component transcriptional regulator, AraC family protein [Paenibacillus vortex V453] gi|315276463|gb|EFU39806.1| two component transcriptional regulator, AraC family protein [Paenibacillus vortex V453] Length = 539 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +R + + + G+E + C NG A + V ++LTDI MP MDG Sbjct: 4 ILIVDDEPIVREGIRNRIPWAEHGFECIGDCENGRDALEAVNRLQPDVVLTDIHMPYMDG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 +EL+R T+ P K++ +TGF Sbjct: 64 LELSRHITQQHPKTKIIILTGF 85 >gi|312622852|ref|YP_004024465.1| two component transcriptional regulator, arac family [Caldicellulosiruptor kronotskyensis 2002] gi|312203319|gb|ADQ46646.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor kronotskyensis 2002] Length = 509 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL ED+ MR+ +IK + + G+E+ NG A D ++ + +++TDI MP MD Sbjct: 3 KILLVEDEIFMRKGIIKLIDWERLGFEIAYEAGNGQEALDILKSKKVDVIITDIKMPVMD 62 Query: 61 GIELARRAT-ELDPDLKVMFITGF 83 GIEL +R + E + ++ I+G+ Sbjct: 63 GIELIKRVSEEFENKPAIIIISGY 86 >gi|301057388|ref|ZP_07198505.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300448531|gb|EFK12179.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 142 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +DD+ +R L L GY V+ ++G + + + P L++ D++MP +G Sbjct: 10 RKTILVIDDDESIRILLRTVLELEGYLVLEASDGVTGQQEYGKNPTDLVIMDLIMPGKEG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEV 114 IE R PD+K++ ++G + K + L KPF LV V Sbjct: 70 IETIRDLRREFPDVKIIAVSGGGRIGAESYLKMAKGLGALRTLRKPFDRESLVKTV 125 >gi|295093072|emb|CBK82163.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 230 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A + +R+ F L+L DI +P+ +G Sbjct: 2 EQILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|288959182|ref|YP_003449523.1| two-component response regulator [Azospirillum sp. B510] gi|288911490|dbj|BAI72979.1| two-component response regulator [Azospirillum sp. B510] Length = 125 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +K++ +D MR + L AGY+VV +G A + L++TD+ MP MD Sbjct: 5 VKKKVMTVDDSRTMRDMVSFTLKGAGYDVVEAADGQQAMSAIATTKVDLVITDLNMPVMD 64 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ L R RA L ++ +T A A + A + KPF+ LV+ V ++ Sbjct: 65 GLTLIRRLRAIPAHRTLPILMLTTEADDAKKAEGRAAGATGWIVKPFNPDKLVSVVQKV 123 >gi|317154330|ref|YP_004122378.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944581|gb|ADU63632.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 640 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 57/103 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D++ +R L L AGYEV + N A A + + + +++TDI MP M G++L Sbjct: 6 ILLVDDEEGIRTVLSITLKDAGYEVDAAANVADALELFKSRQYPIVVTDIRMPGMSGVDL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 R ++P +V+ I+G A + + S + ++KP +L Sbjct: 66 LREIKRIEPRTEVIMISGHADIDVAIQSLKYDASDFITKPINL 108 >gi|238764294|ref|ZP_04625245.1| Nitrogen regulation protein NR(I) [Yersinia kristensenii ATCC 33638] gi|238697445|gb|EEP90211.1| Nitrogen regulation protein NR(I) [Yersinia kristensenii ATCC 33638] Length = 470 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG V+ ++G D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCVTFDSGNQVLDALATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1153 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ DMR +L + L + V + NGA A ++ + L+L+DI+MP MDG E Sbjct: 622 KILVVDDNADMRAYLTRLLAPY-FTVSTAVNGADAIRQLATDLPQLILSDIMMPVMDGKE 680 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L RR + + + ++F++ A D L KPF +L+ ++ Sbjct: 681 LLRRVKQNPVTAPIPLIFLSARAGQEARIDGLEAGADDYLVKPFSSLELLTKI 733 >gi|256830854|ref|YP_003159582.1| Fis family two component sigma5-4 specific transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256580030|gb|ACU91166.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfomicrobium baculatum DSM 4028] Length = 457 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 58/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R L AL K G+ V + + A+A ++++ +L+L D+ + GI+L Sbjct: 4 ILIVDDDLSLREVLEIALIKKGHAVWTAPDSATALAVLQQQSIALILLDLRLGRESGIDL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E ++ V+ +T +A + +SKPF L DL+ V R L Sbjct: 64 LVRIRETWAEVPVLMVTAYADAKSAITAMKHGAKDYISKPFELDDLLYTVERTL 117 >gi|255280459|ref|ZP_05345014.1| DNA-binding response regulator, AraC family [Bryantella formatexigens DSM 14469] gi|255268924|gb|EET62129.1| DNA-binding response regulator, AraC family [Bryantella formatexigens DSM 14469] Length = 531 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ +D+ +R + K L EV + A + +RE+ +L+TDI MPEM Sbjct: 3 KVLIVDDEKMIRMGMSKGLPWEELKVSEVYQAGSAPEALEIIREKQPDILITDINMPEMT 62 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL +RA L D+K++ +TG+ Sbjct: 63 GLELIQRANGLKEDMKIIVLTGY 85 >gi|218129958|ref|ZP_03458762.1| hypothetical protein BACEGG_01541 [Bacteroides eggerthii DSM 20697] gi|217988068|gb|EEC54393.1| hypothetical protein BACEGG_01541 [Bacteroides eggerthii DSM 20697] Length = 1420 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ + Y V +GA A + + +++D++MP MDGIEL Sbjct: 1169 ILVVEDNADMRGY-IRSILRDKYNVFEAAHGAEALNILNSHSVDFIISDLMMPVMDGIEL 1227 Query: 65 ARRATE 70 +RR E Sbjct: 1228 SRRVKE 1233 >gi|168264570|ref|ZP_02686543.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205346966|gb|EDZ33597.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 441 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 235 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 49/79 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +R+ ++ L ++ +EV+ +G +A ++ SL++ D+++P+MDG E Sbjct: 5 KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64 Query: 64 LARRATELDPDLKVMFITG 82 + R E PDL ++ ++ Sbjct: 65 ICARLRERHPDLPIIILSA 83 >gi|148265764|ref|YP_001232470.1| putative GAF sensor protein [Geobacter uraniireducens Rf4] gi|146399264|gb|ABQ27897.1| putative GAF sensor protein [Geobacter uraniireducens Rf4] Length = 323 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 48/85 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +D ++ L L K GY V ++G A + + F+++LTDI++P M Sbjct: 4 MSPHILIVDDSPSFQKMLSGRLVKKGYRVSCASSGEEAIKIFQTDDFNMVLTDIILPGMS 63 Query: 61 GIELARRATELDPDLKVMFITGFAA 85 G+ + + E+ P++ V+ I+ A+ Sbjct: 64 GLNMLKLVKEMKPEMDVVIISSNAS 88 >gi|332798761|ref|YP_004460260.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696496|gb|AEE90953.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 220 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ + L EDD ++ L L K G++VVS G A + E P L + DI++P++D Sbjct: 1 MSYCVYLVEDDKNLNLVLTSYLQKEGWQVVSFLTGNEAKQAI-ENPPDLWILDIMLPDID 59 Query: 61 GIELARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G L + + P + ++FI+ A V L S+ L+KPF R+LV Sbjct: 60 GYHLLQEIKAVSPQVPIIFISARDADIDRVVGLELGSD-----DYLAKPFLPRELVIRSR 114 Query: 116 RLL 118 LL Sbjct: 115 NLL 117 >gi|332533632|ref|ZP_08409492.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis ANT/505] gi|332036913|gb|EGI73373.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis ANT/505] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + L AL K Y V C++G + + E P + + D+ +P++DGIE Sbjct: 2 RILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A + ++ +T + L+KPFH+ +L+ N L+ Sbjct: 62 LINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALI 116 >gi|332535877|ref|ZP_08411596.1| response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332034737|gb|EGI71281.1| response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 442 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 45/82 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +DD+ + R L + L G + C+N +A + F L+++D+ MP M+G E Sbjct: 15 VLCIDDDEIVLRTLTRLLEVNGLSAIVCDNPQNALTLFKNHEFGLIISDMRMPVMNGAEF 74 Query: 65 ARRATELDPDLKVMFITGFAAV 86 +A L PD + + +TG+A + Sbjct: 75 LEKARALAPDTQRILLTGYADI 96 >gi|325261919|ref|ZP_08128657.1| Two-component response regulator YesN [Clostridium sp. D5] gi|324033373|gb|EGB94650.1| Two-component response regulator YesN [Clostridium sp. D5] Length = 258 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 5 ILLAEDDDDMRRFLIKALGK------AGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMP 57 +LL ED+ + L+++L + AG++VV +NG A +++E L++TDI MP Sbjct: 9 VLLVEDE----QLLMQSLSRHIDALDAGFKVVCQASNGQEALALLKKENIHLVMTDIRMP 64 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDG+ LAR+ E P + + +TG+A ++ + KP DL N + R+ Sbjct: 65 VMDGLALARKIHEKYPHVLTVILTGYADFDYAREALKQGVFDYMLKPVVQEDLENTLGRV 124 >gi|315126788|ref|YP_004068791.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas sp. SM9913] gi|315015302|gb|ADT68640.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas sp. SM9913] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + L AL K Y V C++G + + E P + + D+ +P++DGIE Sbjct: 2 RILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A + ++ +T + L+KPFH+ +L+ N L+ Sbjct: 62 LINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALI 116 >gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] Length = 230 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 15/120 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ ED+ ++ RF+ L GY +NG S ++ + + L+L D+++PE+DG Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLMLPELDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-------LSKPFHLRDLVNEV 114 E+ARR + + D ++ +T DS + A + ++KPF + +L+ V Sbjct: 63 FEVARRLRK-EKDTPIIMMTA-------RDSTMDRVAGLDIGADDYITKPFAIEELLARV 114 >gi|257886294|ref|ZP_05665947.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257822150|gb|EEV49280.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 222 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MDG + Sbjct: 3 RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L D+ V+ IT A N + K+ ++KP + +++ V LL Sbjct: 63 LVGSLRNARFDMPVLMITAKADF-----ENKKRGFKLGADDYMTKPIDVNEMILRVEALL 117 >gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 209 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAG-YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +LL ED +RR L+ L G +E++ NG A V++E ++L D+ MP+MDGI Sbjct: 1 MLLVEDHHIVRRGLVFFLKTRGEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPKMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFA 84 E +R + D +KV+ ++ F+ Sbjct: 61 EATKRLKQYDETIKVLILSSFS 82 >gi|226225891|ref|YP_002759997.1| putative two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089082|dbj|BAH37527.1| putative two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 491 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+A+DD+ + + + L + GYEV+ N G S +++ LLL DI+MP+ DG Sbjct: 3 TSRILVADDDEAVLQSVTWLLQENGYEVIPANGGVSCLEQLERRSPDLLLLDILMPDADG 62 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +L R D DL V+ ++ + S A + KP+ ++L+ V Sbjct: 63 CQLLERIKSEDRWRDLPVLMLSAQPPEEASVKSLGLGAADFIRKPYRPKELLARVQ 118 >gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ R +L K L ++G+ V + NG + E + L++ D+++P+++G E Sbjct: 2 KLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A+ + ++ +T V L KPF +L+ V LL Sbjct: 62 IAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLL 116 >gi|237653559|ref|YP_002889873.1| Fis family transcriptional regulator [Thauera sp. MZ1T] gi|237624806|gb|ACR01496.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thauera sp. MZ1T] Length = 473 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R + L A + VV + GA+A + E F+L++TD+ M MDG+++ Sbjct: 7 ILVVEDDAALRDAVCFTLEMAHHRVVGVDGGAAALAAIEREHFNLVVTDLRMQPMDGLQV 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 P V+ +T + V + L KPF L+ V R ++ Sbjct: 67 LHEVRARRPQTPVLLMTAYGDVDKAVAAMRGGACDFLMKPFEPEVLLESVRRYAAVQ 123 >gi|218779453|ref|YP_002430771.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] gi|218760837|gb|ACL03303.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] Length = 454 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 ++L +D+ + + + + L + G +++ +G A D K RE SL+++D MPEM G Sbjct: 12 VMLVDDEPGISKAIQRILRREGLNILTAQSGPQALDMLKNRETMISLIISDHRMPEMTGA 71 Query: 63 ELARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +A ++ PD +TG++ + A+ N + + L+KP+ DL+ +V + L Sbjct: 72 QFLSQARKIVPDAIRFLLTGYSEMDAIIQAVNQGRIHRYLTKPWQDDDLLLQVRQAL 128 >gi|197104775|ref|YP_002130152.1| polar differentiation response regulator [Phenylobacterium zucineum HLK1] gi|196478195|gb|ACG77723.1| polar differentiation response regulator [Phenylobacterium zucineum HLK1] Length = 121 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ ED++ + L GYE++ G +A RE L+L DI +PE+ Sbjct: 1 MAKKVLIVEDNELNMKLFHDLLEAQGYEIIETREGLAALSLAREHRPDLILMDIQLPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ + E D +L + + A A+ D + +SKP + + + RL Sbjct: 61 GLEVTKWLKE-DDELAKIPVVAVTAFAMKGDEERIREGGCEAYISKPISVSHFLETIRRL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|171059251|ref|YP_001791600.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170776696|gb|ACB34835.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 222 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ M+ L +A + G +VV+C +GA A D+ + ++L D+ +P +DG+E Sbjct: 2 KLLLIEDNLAMQTSLQRAFERRGMQVVTCADGARALDRWQASQPDVVLLDLSLPGVDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RA V+ +T AV LN ++ L+KPF L +L V L+ Sbjct: 62 VLTRARAEGLRTPVIILTARGAVGDRVLGLNTGAD-----DYLAKPFDLDELEARVKALV 116 >gi|162451119|ref|YP_001613486.1| response regulator/GGDEF domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161161701|emb|CAN93006.1| response regulator/GGDEF domain protein [Sorangium cellulosum 'So ce 56'] Length = 391 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++A+DD R+ L+ L KAG++V + ++G A + + L+L DIVMP + G+E Sbjct: 25 RIVVADDDRLARQMLVSILQKAGFQVEAVDDGQEAIELIGRGGVDLVLLDIVMPRLTGLE 84 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R + + L V+ +T + A + + KPF +L+ V +L IK Sbjct: 85 ACRLLKSMTSESFLPVVLVTVKSDTANRVEGLKIGADDYVCKPFEEEELLARVGAMLRIK 144 >gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R L +L AG++V++ +G+ A+ + + L++ D+++P+MDG Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T + ++KPF L ++V + +L Sbjct: 75 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAIL 129 >gi|115373350|ref|ZP_01460649.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115369649|gb|EAU68585.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 122 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-------REEPFSLLLTDIVMPE 58 ++AED +MR L + L + GY+V+ +G S + P L++TD+ MP Sbjct: 1 MIAEDHAEMRALLRQVLVREGYQVIEAEDGPSLIRALIGGMLAEPTVPPDLIITDMRMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R D + IT F AL+ ++ A VL KPF +DL V RL+ Sbjct: 61 CTGLEVLARLRREDRCTPFILITAFGDEALHEEATR-LGASVLDKPFAPQDLRALVQRLI 119 >gi|15641063|ref|NP_230695.1| response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587401|ref|ZP_01677171.1| response regulator [Vibrio cholerae 2740-80] gi|147674250|ref|YP_001216518.1| response regulator [Vibrio cholerae O395] gi|153819389|ref|ZP_01972056.1| response regulator [Vibrio cholerae NCTC 8457] gi|153822380|ref|ZP_01975047.1| response regulator [Vibrio cholerae B33] gi|153824954|ref|ZP_01977621.1| response regulator [Vibrio cholerae MZO-2] gi|227081223|ref|YP_002809774.1| response regulator [Vibrio cholerae M66-2] gi|254848179|ref|ZP_05237529.1| response regulator [Vibrio cholerae MO10] gi|298498841|ref|ZP_07008648.1| response regulator [Vibrio cholerae MAK 757] gi|9655515|gb|AAF94209.1| response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548404|gb|EAX58466.1| response regulator [Vibrio cholerae 2740-80] gi|126510070|gb|EAZ72664.1| response regulator [Vibrio cholerae NCTC 8457] gi|126520087|gb|EAZ77310.1| response regulator [Vibrio cholerae B33] gi|146316133|gb|ABQ20672.1| response regulator [Vibrio cholerae O395] gi|149741466|gb|EDM55496.1| response regulator [Vibrio cholerae MZO-2] gi|227009111|gb|ACP05323.1| response regulator [Vibrio cholerae M66-2] gi|227012866|gb|ACP09076.1| response regulator [Vibrio cholerae O395] gi|254843884|gb|EET22298.1| response regulator [Vibrio cholerae MO10] gi|297543174|gb|EFH79224.1| response regulator [Vibrio cholerae MAK 757] Length = 368 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 86 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 87 VEEVSSSYPSLPLVVVSATEEMA 109 >gi|30250021|ref|NP_842091.1| sigma-54 dependent response regulator [Nitrosomonas europaea ATCC 19718] gi|30139128|emb|CAD85992.1| sigma-54 dependent response regulator [Nitrosomonas europaea ATCC 19718] Length = 437 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ EDD D+ L L GY ++ ++G A D +R P L+++D+ M MDG Sbjct: 3 NLPVLIVEDDPDLLEALCATLKLDGYTTLAASSGEQAIDLLRTHPAGLVISDVQMRPMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLTI 120 L + P + V+ +T + V + + L KPF L+ V LLT+ Sbjct: 63 YTLLQAIKRSHPWIPVVLMTAYGEVDKAVAAMRSGASDYLLKPFDPHSLLAHVRHYLLTV 122 Query: 121 KN 122 + Sbjct: 123 SD 124 >gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193] gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193] Length = 224 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 15/122 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +DD +R + AL +AG++VV+ +G A E ++ DI +PE+DG E Sbjct: 2 KILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGLPELDGFE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR + ++ ++F+T + L D ++KPF R+LV + Sbjct: 62 VCRRIRQ-RSEVPILFLTARDDEVDCILGLELGADD-------YVTKPFSPRELVARIRT 113 Query: 117 LL 118 ++ Sbjct: 114 IM 115 >gi|85709615|ref|ZP_01040680.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85688325|gb|EAQ28329.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 117 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 2/115 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ ED+D RR L G+EV G + R L++ DI +P + GIEL Sbjct: 1 MVVEDNDLNRRLFCDVLKANGFEVEPVAEGEKVLETARSVQPDLIIMDIQLPGISGIELI 60 Query: 66 RRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A + D+ V+ +T FAA A A L+KP + +N VN LL Sbjct: 61 AQAKQDSGLSDIPVLAVTAFAAKGDEERIRAAGAASYLAKPVSIMPFMNAVNELL 115 >gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 787 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + L+++L + Y V +G ++ + + L+LTD+V+P++DGI Sbjct: 2 RILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R ++ IT + L KP +LR+L V LL Sbjct: 62 LCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALL 116 >gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1299 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED++ + + L GY ++ NG A + +E L++ DI MP+MDGIE Sbjct: 1172 ILIAEDNETNIKTIWDYLLSKGYRLILAKNGWEAISQAKEYHPQLIMMDIQMPDMDGIEA 1231 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLTIK 121 +R + + + + I A+A+ D A + +SKP L++LV+ + + + ++ Sbjct: 1232 IKRIRD-NQKTREIPIIAVTALAMPGDKEKCLGAGADEYISKPVSLKNLVSTIQQYVHVE 1290 >gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 220 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + +AL + GY V +G+SA + E F L + D+ +P MDG++ Sbjct: 2 RLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + RR + +L V+ +T A D A +A L KPF L +L + LL Sbjct: 62 VLRRLRDSGSNLPVLILTARDA---TEDRIAGLDAGADDYLVKPFDLAELKARLRALL 116 >gi|312135522|ref|YP_004002860.1| response regulator receiver protein [Caldicellulosiruptor owensensis OL] gi|311775573|gb|ADQ05060.1| response regulator receiver protein [Caldicellulosiruptor owensensis OL] Length = 118 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPE 58 M +K+L+ +D +R L + L K G+EVV +C+ G S ++ ++ DI MPE Sbjct: 1 MKKKVLIVDDAAFVRYSLRQTLEKYGFEVVGEACD-GKSCIKLFQQLNPDIVTLDITMPE 59 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDGIE+ ++ E+D + KV+ IT ++ + KP+ LV ++ L Sbjct: 60 MDGIEVLKKIMEIDKNAKVVMITALGQEEKVKEAVLNGAKGFIVKPYKEEHLVKVLSSL 118 >gi|309790758|ref|ZP_07685306.1| periplasmic sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227208|gb|EFO80888.1| periplasmic sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 934 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMP- 57 +N +LL EDD+ +R+ + L G +V++ NG +A E + +LLTD++MP Sbjct: 806 LNAVVLLVEDDERVRQLTEQILHSHGMKVITAANGTAALRVCAEYQDRIDVLLTDVIMPG 865 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++GI+LA R P + ++ ++G++ + KPF L+ ++ + Sbjct: 866 GINGIQLADRIRLSHPHISILLMSGYSDEVFAMTDPVRAETAFIQKPFTPGLLIEKIAEI 925 Query: 118 L 118 L Sbjct: 926 L 926 >gi|307300637|ref|ZP_07580412.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] gi|306904171|gb|EFN34756.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] Length = 131 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM-DG 61 ILLAED+ + AL +AG+ V++ +G A + K E + ++TDI E G Sbjct: 6 ILLAEDETLLLLDFEDALKEAGFMVLAVTSGKKAVEHLKAAESSIAGIVTDIRFAESPSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD--SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++AR A E+DP++ V++I+G +A PD S + ++ KPF + ++ +++LL Sbjct: 66 WDVARIAREIDPEMPVVYISGDSA----PDWASQGVPKSIMIEKPFVMSQMIVAISQLL 120 >gi|302341692|ref|YP_003806221.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638305|gb|ADK83627.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 822 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ ILL +D+ + L GY+VV + SA P F L++TD+ MP M Sbjct: 695 SETILLIDDEPQLVDATTMILEDLGYQVVGKTSPESALRDFNSSPELFDLVITDMTMPGM 754 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G ELAR P L V+ ++G+ +P N N L KP DL + R L+ Sbjct: 755 TGEELARNFLNARPRLPVIILSGYHKRGPSPFGNL-ANLTYLDKPIRRLDLAQAIRRALS 813 >gi|299139617|ref|ZP_07032791.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598545|gb|EFI54709.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 231 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +R+ L + LG G+ V +NG A ++R + +L DI MP M G E Sbjct: 6 KVLVVEDDAGIRQSLFETLGALGFAVGEASNGEDAMLRLRMVNYDAVLLDINMPGMGGKE 65 Query: 64 LARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLV 111 RR + P L V+ +T + D+ A ++KPF +R+L Sbjct: 66 TCRRICQSYPHLPVVMLTVRDEEDDIVEALDAGA---FDYVTKPFQIRELT 113 >gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 235 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+A+D+ + L L +AG+ V +G A + V + L++ D +MP M Sbjct: 2 MNAKILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMS 61 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 GIE+ R R+ DL V+ ++ L D+ A ++KPF R+LV+ V Sbjct: 62 GIEVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGA---DDYITKPFSPRELVSRVK 118 Query: 116 RLL 118 LL Sbjct: 119 ALL 121 >gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] Length = 1342 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 862 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 921 Query: 62 IELARRATEL 71 IEL R L Sbjct: 922 IELLTRVKTL 931 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 1003 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1062 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + + I A A+ D A + LSKP + + L Sbjct: 1063 T-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1121 Query: 120 IKN 122 + + Sbjct: 1122 VSD 1124 >gi|227538742|ref|ZP_03968791.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241251|gb|EEI91266.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 231 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QKILLAEDD ++ L L K ++V C +G A ++ + L + D++MP+ DG Sbjct: 5 QKILLAEDDPNLGELLKDYLELKGKFDVTLCQDGEEALVAFHKDQYDLCILDVMMPKKDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + + + V++ T + + ++KPF + +L+ +N LL Sbjct: 65 FSLGKDIRKTNTTVPVIYATAKGMMEDKTQAFELGGDDYITKPFRVEELLLRINALL 121 >gi|206891156|ref|YP_002249147.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743094|gb|ACI22151.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 356 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 NQ IL+ +D+ D L K L GY +G A KV E L++ D++MP+MDG Sbjct: 5 NQTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVYEVYPDLIILDVMMPKMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--------VLSKPFHLRDLVNE 113 E+ +R L D + FI + L S+ K + KPF R+L Sbjct: 65 YEVCQR---LKTDDRTKFI---PIIMLTAKSDVESKVKGFDIGADDYVPKPFDYRELSAR 118 Query: 114 VNRLLTIK 121 V L+T K Sbjct: 119 VRSLITRK 126 >gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 236 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + NG A D E L + D+++P+MDG Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR V+F+T ++KPF L ++V + +L Sbjct: 69 VTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVL 123 >gi|254291729|ref|ZP_04962515.1| response regulator [Vibrio cholerae AM-19226] gi|150422322|gb|EDN14283.1| response regulator [Vibrio cholerae AM-19226] Length = 368 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 86 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 87 VEEVSSSYPSLPLVVVSATEEMA 109 >gi|153217532|ref|ZP_01951213.1| response regulator [Vibrio cholerae 1587] gi|124113523|gb|EAY32343.1| response regulator [Vibrio cholerae 1587] Length = 368 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 86 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 87 VEEVSSSYPSLPLVVVSATEEMA 109 >gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 1331 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MD Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLDHADFDLVLMDMQMPVMD 1049 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GI A +P + + I A A+ D A + LSKP + + Sbjct: 1050 GIT-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 1108 Query: 118 LTIKN 122 L + + Sbjct: 1109 LQVSD 1113 >gi|91775599|ref|YP_545355.1| CheA signal transduction histidine kinases [Methylobacillus flagellatus KT] gi|91709586|gb|ABE49514.1| CheA signal transduction histidine kinases [Methylobacillus flagellatus KT] Length = 1643 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 LL +D MR+ L + L + GYEVV+ +G A +++ ++++TDI MP MDG ELA Sbjct: 1528 LLVDDSLTMRKVLGRFLEREGYEVVTAKDGMEALQAMQQSLPAVIVTDIEMPRMDGFELA 1587 Query: 66 R 66 R Sbjct: 1588 R 1588 >gi|78356538|ref|YP_387987.1| response regulator receiver (CheY-like) modulated CheW protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218943|gb|ABB38292.1| response regulator receiver (CheY-like) modulated CheW protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 318 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 17/119 (14%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---------REEPFS---- 48 N K L+A+D +R + L KAG++V + ++G A+ ++ + P S Sbjct: 182 NLKTLIADDSSSIRNMIGATLKKAGFDVTATSSGLEAWKQLEAWKKESQEQGRPLSDFVV 241 Query: 49 LLLTDIVMPEMDGIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKP 104 L+++DI MPEMDG L RR + DP LK VM + AL A +SKP Sbjct: 242 LVVSDIEMPEMDGHNLTRRIKD-DPVLKQLPVMLFSSLITEALRHKGEAVGADDQVSKP 299 >gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 230 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 15/120 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ ED+ ++ RF+ L GY +NG S ++ + + L+L D+++PE+DG Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-------LSKPFHLRDLVNEV 114 E+ARR + + D ++ +T DS + A + ++KPF + +L+ V Sbjct: 63 FEVARRLRK-EKDTPIIMMTA-------RDSTMDRVAGLDIGADDYITKPFAIEELLARV 114 >gi|45358867|ref|NP_988424.1| response regulator receiver protein [Methanococcus maripaludis S2] gi|45047733|emb|CAF30860.1| Response regulator receiver [Methanococcus maripaludis S2] Length = 119 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED++D+ + L Y+V+ ++G + V+E P L+L DI+MP M G Sbjct: 2 KKILVVEDEEDILNLVRIILEINNYKVIVAHDGYQGLEMVKENP-DLILLDIMMPGMTGW 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + D+ V+ +T A ++ + K + KPF DL+ +VN +L Sbjct: 61 EFLDKIRADGYDIPVIVLTANAQMSTLETAINKKVDDCVVKPFDREDLMEKVNSIL 116 >gi|13633959|sp|Q9ZHD3|SILR_SALTY RecName: Full=Probable transcriptional regulatory protein silR gi|4206626|gb|AAD11745.1| putative transcriptional regulator responder SilR [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 228 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD +L K L +AG+ V +NG + Y + L++ DI++P+++G + Sbjct: 2 KILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + L KPF +L+ V LL Sbjct: 62 IIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|163849032|ref|YP_001637076.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526995|ref|YP_002571466.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163670321|gb|ABY36687.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450874|gb|ACM55140.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 872 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 2/115 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGIE 63 L+ +DD +R L + L +AG NG +A + E S+ L D+ MP M+G+E Sbjct: 747 LIVDDDPAIRATLNRILERAGMVTTEAANGQAALSMLTESALSIDIALVDLAMPGMNGLE 806 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L P L V+ ++G A + L KP+ RDL+ +++ LL Sbjct: 807 LLAAIRRRMPQLPVLLMSGNAGEVTKDNLPLDHYTDFLPKPYRSRDLLEKMSTLL 861 >gi|332983212|ref|YP_004464653.1| AraC family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332700890|gb|AEE97831.1| two component transcriptional regulator, AraC family [Mahella australiensis 50-1 BON] Length = 535 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 37/53 (69%) Query: 31 SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 +C NG A D++ E ++LTDI MP MDGIE+A++ + PD+K++F++ + Sbjct: 33 ACANGKQAIDRIEELKPHIVLTDIAMPIMDGIEMAKQLKQSHPDIKLIFMSCY 85 >gi|291518859|emb|CBK74080.1| Response regulator containing CheY-like receiver and SARP domains [Butyrivibrio fibrisolvens 16/4] Length = 274 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVA 87 E+ N+ A +++ + P ++ +D+ MP M+G++LA + E++PD+ ++F TG+A + Sbjct: 29 EIFKANDPFEAIEQMTKHPADIVFSDVDMPGMNGLKLAEKLQEINPDVDIVFATGYAHYS 88 Query: 88 LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L+ A K + KP D+ ++++ +N Sbjct: 89 LDAWKTAAK--AFILKPVSKDDMKAAIDKITANRN 121 >gi|254000415|ref|YP_003052478.1| response regulator receiver protein [Methylovorus sp. SIP3-4] gi|313202374|ref|YP_004041032.1| response regulator receiver protein [Methylovorus sp. MP688] gi|253987094|gb|ACT51951.1| response regulator receiver protein [Methylovorus sp. SIP3-4] gi|312441690|gb|ADQ85796.1| response regulator receiver protein [Methylovorus sp. MP688] Length = 122 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +++ +D +R+ + AL AGY V+ +G A K+ + L+++D+ MP MD Sbjct: 1 MSKTVMIVDDSTTLRQVVRLALEGAGYSVLEGADGKDALSKLTGQKVHLIVSDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI + +L P K V+ +T A + + A + KPF L+ V++L Sbjct: 61 GITFVKAVKQL-PAYKFTPVIMLTTEAGESKKLEGQAAGAKAWVVKPFQPAQLLMAVSKL 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|218704409|ref|YP_002411928.1| hybrid sensory histidine kinase TorS [Escherichia coli UMN026] gi|218431506|emb|CAR12384.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli UMN026] Length = 950 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 723 RLLLIEDNPLTQRITVEMLNNSGAQVVAVGNAAQALEALQNSEPFAAALVDFDLPDIDGI 782 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 783 TLARQLAQQYPSL---VLIGFSA 802 >gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD + L +AL + GYEV +G +A + L++ D+ +P MDG+E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 63 VARRLRSEGHTVPILVLTARADEVDTVVGLDAGAD-----DYVTKPFRLAELLARVRALL 117 >gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD +R L ++L GY V +G A D + L+ D++MP +D Sbjct: 1 MAVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 >gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 231 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ +DD + R + L AG++ ++ +GA+A R E L++ D+++P++D Sbjct: 1 MPQRILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G +L R DP L M I A + D ++KPF+ R++V V + Sbjct: 61 GADLT-RTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris MG1363] gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris NZ9000] Length = 230 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 15/120 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ ED+ ++ RF+ L GY +NG S ++ + + L+L D+++PE+DG Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLMLPELDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-------LSKPFHLRDLVNEV 114 E+ARR + + D ++ +T DS + A + ++KPF + +L+ V Sbjct: 63 FEVARRLRK-EKDTPIIMMTA-------RDSTMDRVAGLDIGADDYITKPFAIEELLARV 114 >gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1005 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ R L + L G+E V NG A + +RE F +L DI MPE+DG+E Sbjct: 882 KVLVAEDEAVNRMTLSRCLHHLGHEAVCVTNGLEAVEALREGRFDCVLMDIQMPELDGLE 941 Query: 64 -LARRATELDPDLKVM-FITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 LAR E + + + A A+ D A + + KP L +L + RL Sbjct: 942 ALARIRAEAGEQARALPPVVALTAHAMEGDRERFLAAGMSAYIPKPIELGELERVLLRL 1000 >gi|68565392|sp|Q44929|GTCR_ANEMI RecName: Full=Response regulator gtcR gi|468745|emb|CAA55264.1| gtcR [Brevibacillus brevis] Length = 242 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 42/69 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+A+D+ ++ L L + Y ++ +G A++ +R+ P L + DI+MP +D Sbjct: 1 MSKTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALD 60 Query: 61 GIELARRAT 69 G +L +R T Sbjct: 61 GFQLIKRLT 69 >gi|302341488|ref|YP_003806017.1| signal transduction protein [Desulfarculus baarsii DSM 2075] gi|301638101|gb|ADK83423.1| putative signal transduction protein [Desulfarculus baarsii DSM 2075] Length = 406 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 7/123 (5%) Query: 3 QKILLAEDD----DDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 ++IL +D+ D +RR L + +E+V GA A ++++ PF L++TD+ MP Sbjct: 2 KRILFVDDEPQILDGLRRMLRGK--RREWEMVFVGGGAEALAEIKKRPFDLVVTDMRMPV 59 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG EL R E+ P + ++G + S P + + L+KP ++L+ + + + Sbjct: 60 MDGAELLERVREMCPQTVRIVLSGHSEREKIMRSVRPAH-QYLAKPIEQQELMAVLQKAI 118 Query: 119 TIK 121 ++ Sbjct: 119 DLQ 121 >gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 230 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+A+D+ D+R+ L L GYEVV+ NG A + + +E L++ D+ MP+ Sbjct: 1 MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIE-LMDESIGLVILDVEMPKKS 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + R P ++F+T + + + ++KPF DL+ V LL Sbjct: 60 GIVVCSEIRQKSFVP---ILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALL 116 >gi|282895997|ref|ZP_06304028.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9] gi|281199107|gb|EFA73977.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9] Length = 642 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEM 59 + IL+ +D+ + +L Y V++ ++G A Y + R++ SL+LTDIVMP M Sbjct: 517 ETILVVDDEPAICEITKASLENYNYRVMTAHDGIEAIALYVEHRDQ-ISLILTDIVMPSM 575 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ R +++P LK++ +G A + + A L KPF L+ ++ + Sbjct: 576 DGLTSIRTLKKINPHLKIIAFSGLAPSDKINAAYSMGVAAFLCKPFTATQLLQTISAVNG 635 Query: 120 IKN 122 I N Sbjct: 636 INN 638 >gi|167764077|ref|ZP_02436204.1| hypothetical protein BACSTE_02460 [Bacteroides stercoris ATCC 43183] gi|167698193|gb|EDS14772.1| hypothetical protein BACSTE_02460 [Bacteroides stercoris ATCC 43183] Length = 1356 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + K+L+ ED++ +R L K Y+++ NG ++ VR E ++++D+VMP+M G Sbjct: 1093 DAKLLIVEDNESIREMLANIF-KPFYQILMAANGEEGWELVRSEMPCIVVSDVVMPKMSG 1151 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + T+ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1152 TELCKLIKTDFNTCHIPVVLLTARTAIESNIEGLRIGADDYITKPFNTNLLISRCNNLV 1210 >gi|121728179|ref|ZP_01681214.1| response regulator [Vibrio cholerae V52] gi|121629576|gb|EAX61999.1| response regulator [Vibrio cholerae V52] Length = 368 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 86 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 87 VEEVSSSYPSLPLVVVSATEEMA 109 >gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] Length = 239 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + +NGA+A DK RE ++ D++MP MDG Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPGMDGFG 73 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L RR D +F+T A + L D ++KPF L ++V + Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 126 Query: 117 LL 118 +L Sbjct: 127 IL 128 >gi|56416000|ref|YP_153075.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364927|ref|YP_002144564.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130257|gb|AAV79763.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096404|emb|CAR62009.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 441 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|75909983|ref|YP_324279.1| signal transduction histidine kinase CheA [Anabaena variabilis ATCC 29413] gi|75703708|gb|ABA23384.1| CheA Signal Transduction Histidine Kinases (STHK) [Anabaena variabilis ATCC 29413] Length = 1180 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 16/135 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +++ IL+ +D +R+ L L K+GY+V+ NGA A ++++ P L+++D+ MP M Sbjct: 1047 LSKVILVVDDAISLRQTLSLTLQKSGYQVIQAQNGAEALEQLQRHPEIQLVVSDLEMPRM 1106 Query: 60 DGIELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-- 114 +G E + +P L V+ +T +A + LSKP+ +L+N + Sbjct: 1107 NGFEFLSH-MQHNPKYTKLPVIILTSRSAEKHRQLAQELGAKAYLSKPYLEHELINTIES 1165 Query: 115 ---------NRLLTI 120 NRLLT+ Sbjct: 1166 LINSAKDNLNRLLTV 1180 >gi|77360226|ref|YP_339801.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis TAC125] gi|76875137|emb|CAI86358.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis TAC125] Length = 224 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + L AL K Y V C++G + + E P + + D+ +P++DGIE Sbjct: 2 RILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A + ++ +T + L+KPFH+ +L+ N L+ Sbjct: 62 LINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALI 116 >gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family [Chlorobium phaeovibrioides DSM 265] Length = 236 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD ++ + + L KAGY+ + NG A+D++ F L+L D+++P +DG E+ Sbjct: 6 LLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLPGIDGFEV 65 Query: 65 AR--RATELDPDLKVMFIT 81 R R ++ D+ ++ +T Sbjct: 66 CRKIRQHQIYKDIPIIMLT 84 >gi|329922646|ref|ZP_08278198.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941988|gb|EGG38271.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 503 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 17 FLIKAL------GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 F+I+ L K G EVV NG A +K+ P +L+TDI MP M G+EL A Sbjct: 12 FIIEGLVDVVDWSKYGIEVVGHAENGRQALEKMAVVPVDILITDISMPVMTGLELIEGAR 71 Query: 70 ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +L+ +LKV+ ++GF A + L KP +L++L Sbjct: 72 KLNRNLKVIILSGFDDFAYLKEGMRLGIENYLLKPINLKEL 112 >gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ + RFL GY V +G S + E + L+L DI++P +D Sbjct: 1 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G E+ ++ E D+ V+ +T V + ++KPF + +L V Sbjct: 61 GFEVLKKIRE-HSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVR 114 >gi|297519761|ref|ZP_06938147.1| nitrogen regulation protein NR(I) [Escherichia coli OP50] Length = 280 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|293369022|ref|ZP_06615621.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292635894|gb|EFF54387.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1307 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL Sbjct: 1062 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1120 Query: 65 ARRATE-LD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + LD + V+ +T + + + KPF + L V LL+ Sbjct: 1121 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLS 1177 >gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 1081 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED++ L LG GY ++ +G A D + E +L+L DI MP +DG+E Sbjct: 964 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1023 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 R ++ P + + I A+A+ D A ++KP L+ L ++ +L + Sbjct: 1024 INRIRQI-PTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEILDL 1081 >gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 56/118 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++++L+ EDD+D R F+ K G+ GY V + ++G + F ++ D ++P +D Sbjct: 1 MSRRLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + + V+ +T +AV L KPF ++L + LL Sbjct: 61 GLAVIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALL 118 >gi|238913752|ref|ZP_04657589.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 441 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|238854466|ref|ZP_04644805.1| two-component system regulator [Lactobacillus jensenii 269-3] gi|260665486|ref|ZP_05866333.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|282934536|ref|ZP_06339788.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|313471830|ref|ZP_07812322.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153] gi|238832893|gb|EEQ25191.1| two-component system regulator [Lactobacillus jensenii 269-3] gi|239530126|gb|EEQ69127.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153] gi|260560754|gb|EEX26731.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|281301374|gb|EFA93666.1| response regulator ArlR [Lactobacillus jensenii 208-1] Length = 240 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L YE V NNG D E F +L D+++P+++G+E Sbjct: 3 KILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNGLE 62 Query: 64 LARRATEL 71 +ARR ++ Sbjct: 63 IARRVRQV 70 >gi|188991136|ref|YP_001903146.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167732896|emb|CAP51090.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 937 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MDGI 62 +L+ +D+ +R + L + GY + +GAS ++ + LL+TD+ +P M+G Sbjct: 821 VLVVDDEPSVRMLVADILEELGYTALQAVDGASGLSVLQSDVRIDLLITDVGLPGGMNGR 880 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A A P L V+FITG+A A+ VL+KPF + + + ++ Sbjct: 881 QMADAARIARPRLSVLFITGYAETAVLGAGQLAPGMAVLTKPFGIDAMAARIREMI 936 >gi|163793563|ref|ZP_02187538.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181365|gb|EDP65880.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 1217 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 36/60 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ R + K LG+ GY +GA A ++ R + L+LTD MPEMDG +L Sbjct: 958 ILVAEDNPTNRLVIAKVLGRLGYAHEMAEDGAEALERWRNARYGLILTDFHMPEMDGFQL 1017 >gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 1331 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 992 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHTDFDLVLMDMQMPVMDGI 1051 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + + I A A+ D A + LSKP + + L Sbjct: 1052 T-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110 Query: 120 IKN 122 + + Sbjct: 1111 VSD 1113 >gi|148976389|ref|ZP_01813095.1| chemotaxis CheV [Vibrionales bacterium SWAT-3] gi|145964212|gb|EDK29468.1| chemotaxis CheV [Vibrionales bacterium SWAT-3] Length = 308 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV++ +G AY+K+ + + SL+++DI Sbjct: 182 RRILIADDSTVARKQVQRAIESIGFEVIAVKDGKEAYEKLMQMSAEGSIYDQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHAELK-DLYVILHSSLSGV 275 >gi|197119088|ref|YP_002139515.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197088448|gb|ACH39719.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] Length = 314 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 54/110 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ +R + + L G+ V +G A + R L++TDI M M GIEL Sbjct: 3 LLVVDDEETLRSVVSQVLSADGFTVAEAASGEEALEAFRSVSHPLVITDIRMGGMSGIEL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E +PD +V+ +T A++ + L KPF DL++ V Sbjct: 63 LTEIKEHNPDTQVVIMTSHASLDSALTALRAGAYDYLVKPFESLDLISAV 112 >gi|86609393|ref|YP_478155.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557935|gb|ABD02892.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 121 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 16/124 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED R + K L + G+EV++ +G A + V++ L++ DIVMP M+G E Sbjct: 3 RVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNGYE 62 Query: 64 LAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R +A L ++ + + + D+ ++KPF ++LV + Sbjct: 63 VCRLLKADPLTQKTPIVMCSSKGEEFDRYWGIRQGADA-------YIAKPFQPQELVGTI 115 Query: 115 NRLL 118 +LL Sbjct: 116 KQLL 119 >gi|77969647|gb|ABB11026.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 248 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q IL+ ED+ + +I ALG G + V C G +A D +R+ F L+ D+ +P++ Sbjct: 13 MHQPNILIVEDEVAIADTIIYALGTDGMQTVHCTLGQAALDHLRDTRFDLVALDVGLPDL 72 Query: 60 DGIELARRATELDPDLKVMFITG 82 G E+ RR D+ V+F+T Sbjct: 73 SGFEVCRRLRTFS-DVPVIFLTA 94 >gi|323493294|ref|ZP_08098418.1| sensor protein LuxN [Vibrio brasiliensis LMG 20546] gi|323312457|gb|EGA65597.1| sensor protein LuxN [Vibrio brasiliensis LMG 20546] Length = 837 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 5 ILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L DD +++R L+K L + GY VV NNG A + ++ P L+ DI MP MDG E Sbjct: 718 MILVVDDKEIQRTLVKLYLEQLGYGVVLANNGKVAIEIIQSNPVDLVFMDIQMPVMDGFE 777 Query: 64 LARRATELDPDLKVMFITG 82 A + P + ++ ++G Sbjct: 778 AASIIRQSYPAIPIIALSG 796 >gi|311281668|ref|YP_003943899.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Enterobacter cloacae SCF1] gi|308750863|gb|ADO50615.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Enterobacter cloacae SCF1] Length = 469 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 55/115 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NG D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALSGAGLSCTTFENGNEVLDALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|294643180|ref|ZP_06721009.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|292641478|gb|EFF59667.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] Length = 1307 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL Sbjct: 1062 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1120 Query: 65 ARRATE-LD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + LD + V+ +T + + + KPF + L V LL+ Sbjct: 1121 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLS 1177 >gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 246 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +GA A R+ ++ D+++P+MDG+ Sbjct: 22 RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLT 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R PD+ V+F+T AV ++KPF L ++V + L+ Sbjct: 82 VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLI 136 >gi|237722197|ref|ZP_04552678.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448007|gb|EEO53798.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1409 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ Y V+ NG A + P +++D++MP MDGIEL Sbjct: 1158 ILVVEDNVDMRGY-IRSILHEHYNVLEAANGEEALHILNSNPVDFIISDLMMPVMDGIEL 1216 Query: 65 ARRATE 70 +RR + Sbjct: 1217 SRRVKD 1222 >gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+D +R + L GYE++ +G A E L++ DI++PE+D Sbjct: 1 MQRKILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GIELARR 67 G + RR Sbjct: 61 GWSVCRR 67 >gi|226310462|ref|YP_002770356.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093410|dbj|BAH41852.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 468 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +D+ ++RR L L K GYE++ +G A ++V ++L D+ MP +D Sbjct: 2 MTSKVLIVDDEANVRRALSTTLRKMGYELLEAGSGVEALEQVERFCPQVMLLDLRMPHLD 61 Query: 61 GIELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G++ R+ E L +V+ +T + + + ++ + KPF L + V LT Sbjct: 62 GMDTLRQLNERKGRLPRVVMMTAYGSASDVMEAMKLGAFDYVQKPFDLGQVKQVVAHALT 121 >gi|260642135|ref|ZP_05414654.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623317|gb|EEX46188.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1329 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142 Query: 65 ARRATE-LD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + LD + V+ +T + + + KPF + L V LL+ Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLS 1199 >gi|218551374|ref|YP_002385166.1| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia fergusonii ATCC 35469] gi|218358916|emb|CAQ91577.1| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia fergusonii ATCC 35469] Length = 452 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I+ ED DD+R + L AGY V+SC + ++ ++ ++LTD+ +P + G+EL Sbjct: 10 IIYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSFPLIQSLQNIIVLTDVRLPGISGLEL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+D + V+ ITG V + ++ + KP L++ + R Sbjct: 70 LNYINEMDNKIPVILITGHGDVEMAVEAMRNGAFDFIEKPCSSDKLLSIIAR 121 >gi|242280889|ref|YP_002993018.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] gi|242123783|gb|ACS81479.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] Length = 121 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD M L L K ++ +G P L++ DI MP MDGI Sbjct: 2 KTILIVDDDPKMLELLKHYLKKEEVNTLAATDGEKGLSLFESTPVDLVIIDIFMPNMDGI 61 Query: 63 ELARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + P+ ++ I+G F + + A + L KPF +D + V+ +L Sbjct: 62 QTIMELKQKKPECSILVISGGGEFTGLEYLKQAKALGAKEALVKPFTQKDFLTTVHSML 120 >gi|261405717|ref|YP_003241958.1| two component AraC family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261282180|gb|ACX64151.1| two component transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10] Length = 503 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 17 FLIKAL------GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 F+I+ L K G EVV NG A +K+ P +L+TDI MP M G+EL A Sbjct: 12 FIIEGLVDVVDWSKYGIEVVGHAENGRQALEKMAVVPVDILITDISMPVMTGLELIEGAR 71 Query: 70 ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +L+ +LKV+ ++GF A + L KP +L++L Sbjct: 72 KLNRNLKVIILSGFDDFAYLKEGMRLGIENYLLKPINLKEL 112 >gi|172038233|ref|YP_001804734.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699687|gb|ACB52668.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 384 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD +R L + L + GY+VV + GA K +E ++++ D VMP + G+E Sbjct: 3 QILLIDDDRTIRSLLERTLKRQGYDVVCVDKGAEGLIKAKELHPAMIICDWVMPGITGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEV 114 + R+ + PDL F ++ D +A L KP + + + + Sbjct: 63 VCRQVKRI-PDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARI 115 >gi|167034787|ref|YP_001670018.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861275|gb|ABY99682.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 227 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL EDDD + + L G V N A A ++ F +++ D+ +P+ DG++ Sbjct: 2 HVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGLK 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR E L V+ +T AV D L KPF LR+L ++ LL Sbjct: 62 LLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLL 116 >gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 687 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD R L + L K G+ V+ NG A ++V E L+L D++MPEMDG Sbjct: 566 ERILVVEDDHTNREMLRRMLVKEGWSVIEAANGRIALERVAESRPDLILLDLMMPEMDGF 625 Query: 63 EL 64 E Sbjct: 626 EF 627 >gi|323704634|ref|ZP_08116212.1| response regulator receiver protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536096|gb|EGB25869.1| response regulator receiver protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 193 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 50/106 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+A+D ++R L L GY V++ +G A + ++ L DI MP + G Sbjct: 2 KKVLVADDTKNIRMLLTTCLESEGYNVITAKDGEEALEILKNGDVELAFIDIKMPLLSGT 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 E+ R+ V+ IT FA + + + + KPF ++ Sbjct: 62 EVLRKIRSCGITTPVIIITAFATIKNAIECTKLGAVEYIQKPFTVK 107 >gi|322433223|ref|YP_004210444.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] gi|321165615|gb|ADW71317.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] Length = 135 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I + +D+ + L L K+G+ + N A LL++D+VMP++ G+ Sbjct: 7 KHIFVVDDERIIAETLTAILQKSGFSARAFYNPLDALAAAASAAPDLLISDVVMPQLSGV 66 Query: 63 ELARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ELA + T+L PD KV+ +G A A L + +LSKP H DL+ ++ Sbjct: 67 ELAIQLTKLCPDCKVLLFSGQAQTADLLLDARQLGHDFSLLSKPIHPSDLLKQI 120 >gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 68/126 (53%), Gaps = 11/126 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q +L+A+D+ +R L K G++V+ +GA A +V+ ++L DI+MP +DG Sbjct: 4 QQTVLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIMMPVLDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 +E+ ++ ++ D+ ++ +T A + D + ++ +SKPF+ R++V V Sbjct: 64 LEVCKQVRKIS-DIPIIMLT-----AKDSDDDRILGLEIGADDYISKPFNTREVVARVKA 117 Query: 117 LLTIKN 122 +L N Sbjct: 118 VLRRTN 123 >gi|282890755|ref|ZP_06299275.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499348|gb|EFB41647.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 410 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 45/66 (68%), Gaps = 1/66 (1%) Query: 2 NQKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N+K +L DD ++ +++ L +A Y+V++ NGA A + ++++ F+L++TD+ MP MD Sbjct: 5 NKKTILVVDDTPLQAIMLRRVLVQANYDVLTAKNGAEALEFLKKQKFALVITDVNMPIMD 64 Query: 61 GIELAR 66 G +L R Sbjct: 65 GFKLCR 70 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 45/79 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ + L L + Y V N+G +A+D V + L+L DIV+P++DGI Sbjct: 2 KILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61 Query: 64 LARRATELDPDLKVMFITG 82 L ++ + ++ +TG Sbjct: 62 LCKKIRSSGRRVPILLLTG 80 Score = 42.7 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 4/125 (3%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KIL+ +DD L L G E+++ N+ ++ + +L+ DI MP M Sbjct: 371 MNKTKILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDIEMPTM 430 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-NR 116 GIEL + R+ + ++ ++F+T + V + + +SKP + +L N + NR Sbjct: 431 SGIELCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNR 490 Query: 117 LLTIK 121 L ++ Sbjct: 491 LERVR 495 Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R+ L L + GY V++ +G A + + ++L D+VMP M+G E Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1123 Query: 65 --ARRATELDPDLKVMFITGFAAVALNP----DSNAP--KNAKVLSKPFHLRDLVNEVNR 116 + D+ ++ + + + N DSN+ K A LSKP DL N + + Sbjct: 1124 MAGLKKCSDTRDIPIVICSVYKSSQNNSNYQQDSNSEGVKFADWLSKPVEETDLFNSLRK 1183 Query: 117 LL 118 ++ Sbjct: 1184 VV 1185 >gi|260683442|ref|YP_003214727.1| two-component response regulator [Clostridium difficile CD196] gi|260687038|ref|YP_003218171.1| two-component response regulator [Clostridium difficile R20291] gi|260209605|emb|CBA63261.1| two-component response regulator [Clostridium difficile CD196] gi|260213054|emb|CBE04415.1| two-component response regulator [Clostridium difficile R20291] Length = 244 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E ++ L D+++P++ Sbjct: 13 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 72 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + E + ++ +T A + + KPF +++L+ V+ LL Sbjct: 73 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALL 131 >gi|170739363|ref|YP_001768018.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168193637|gb|ACA15584.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1059 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 Q++L+ ED+ ++ F + L GYE N A D++ + F ++ +D+VMP M Sbjct: 933 QRVLVVEDNVEVGSFATQILEDLGYETTWAVNAEEALDRLGPDGSGFDVVFSDVVMPGMG 992 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ LA++ + P L V+ +G++ V + K+L KP+ L Sbjct: 993 GLALAQQLRQRLPHLPVLLASGYSHVLAQ---DGQHGFKLLHKPYSAEQL 1039 >gi|197117921|ref|YP_002138348.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087281|gb|ACH38552.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 456 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 51/105 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D++++R L L K GY+V NG A +K R+ ++ +L DI MP +DG Sbjct: 4 KKKILVVDDEENLRHMLQVMLKKQGYQVEQAANGEQAMEKARQGSYAFILCDIRMPVLDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 T + V+ ++ + + +SKPF+ Sbjct: 64 RAFLAACTTAGINSTVIMMSAYGTLEDAVGCMKLGAYDYISKPFN 108 >gi|33592141|ref|NP_879785.1| two-component response regulator [Bordetella pertussis Tohama I] gi|33571785|emb|CAE41292.1| two-component response regulator [Bordetella pertussis Tohama I] gi|332381557|gb|AEE66404.1| two-component response regulator [Bordetella pertussis CS] Length = 208 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ + + +DD+ +R L L GY V + +G + D+ +L+ D+ MP M Sbjct: 6 LSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGENFLDEYDASQIGVLIADVRMPGMS 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL + + L ++FITG V + + L KPF+ DL V R+L Sbjct: 66 GLELQEQLIARNAPLPIVFITGHGDVPMAVSTMKKGAVDFLEKPFNESDLREIVARML 123 >gi|27375495|ref|NP_767024.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27348632|dbj|BAC45649.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 139 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD ++ + L +AG+ V +G PF LL DI MP MDG+E Sbjct: 4 ILIVDDDPAVQITIRLLLERAGHHVTVAGDGHKGLALFEASPFDLLFLDIFMPGMDGLET 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNA-PKNAKV---------LSKPFHLRDLVNEV 114 R L P + ++ I+G ++ PD++A P K+ L KPF L+ V Sbjct: 64 MRHIRALAPAIPIIVISG---RSITPDAHAEPDFLKMATKLGAVASLQKPFRADALLAAV 120 Query: 115 NRLL 118 + L Sbjct: 121 SGCL 124 >gi|54307752|ref|YP_128772.1| two-component response regulator [Photobacterium profundum SS9] gi|90413158|ref|ZP_01221154.1| putative aerobic respiration control protein FexA [Photobacterium profundum 3TCK] gi|46912175|emb|CAG18970.1| putative aerobic respiration control protein FexA [Photobacterium profundum SS9] gi|90325849|gb|EAS42301.1| putative aerobic respiration control protein FexA [Photobacterium profundum 3TCK] Length = 239 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R L GY V N+GA + + E P L++ DI +P +G+ L Sbjct: 6 ILIVEDEHVTRNTLKSIFEAEGYTVFEANDGAEMHQMLSEHPVHLVIMDINLPGKNGLLL 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 AR E D+ +MF+TG + + D ++KPF+ R+L L Sbjct: 66 ARELRE-QGDMALMFLTGRDNEVDKILGLEIGADD-------YITKPFNPRELTIRARNL 117 Query: 118 LT 119 LT Sbjct: 118 LT 119 >gi|326625883|gb|EGE32228.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 441 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|308275182|emb|CBX31779.1| hypothetical protein N47_N26040 [uncultured Desulfobacterium sp.] Length = 332 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N++IL +D+ + + L + GY VV CN+ A + +P F ++TD++MP M Sbjct: 198 NERILFVDDEPSITNMVKLILERFGYSVVCCNSSTEALSIFKSQPEQFDGIVTDMIMPGM 257 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+AR ++ ++ +G L ++ + + KP + ++V + + L Sbjct: 258 TGLEMAREICKIRLKTPIILCSGCIEDFLLHEARSAGIRGFVRKPLLMHEIVTVLRKAL 316 >gi|302343443|ref|YP_003807972.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] gi|301640056|gb|ADK85378.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] Length = 534 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +ILL +D+ ++R L + L + VV G A + F D+ MPEM G+ Sbjct: 21 RILLVDDEPNIREALREYLSSINNHHVVCAAGGPEALAIFKPGQFDCAFLDLKMPEMTGV 80 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R E D L V+ +TGF ++ D+ + L KPF+L ++ + R++ Sbjct: 81 ELLSRLKEQDKSLPVIIMTGFPSLDAAIDTMRQGASDFLIKPFNLSEIKVTLERVV 136 >gi|294498083|ref|YP_003561783.1| chemotaxis protein CheV [Bacillus megaterium QM B1551] gi|294348020|gb|ADE68349.1| chemotaxis protein CheV [Bacillus megaterium QM B1551] Length = 301 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVR---------EEPFSLLL 51 N+KI++AED +RR + L +AGYE NG A++ + + LL+ Sbjct: 173 NKKIVVAEDSPLLRRMIEDTLAQAGYENTEFFENGEEAWNYLSSVIDEGVEISDQVQLLI 232 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 TDI MP+MDG L ++ E +P L V+ + F+++ Sbjct: 233 TDIEMPQMDGHHLTKKVKE-NPQLSVLPVIIFSSL 266 >gi|224585714|ref|YP_002639513.1| transcriptional regulator ZraR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470242|gb|ACN48072.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 441 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|172036101|ref|YP_001802602.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697555|gb|ACB50536.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1349 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 17/130 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--------FSLLLTDIV 55 KIL+ ED+ DMR +L K L YEV + N+G A +R + L+LTDI+ Sbjct: 960 KILIVEDNGDMRDYLKKLLDPY-YEVETVNDGLEALTLIRNVSDHNNNGGMYDLVLTDIM 1018 Query: 56 MPEMDGIELARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 MP +DG EL R T+ P + + TG + ++ A L KPF R L Sbjct: 1019 MPRLDGFELLRSLRNKPETQKIPIIMISARTGEESQVEGLEAGAD---DYLGKPFSARQL 1075 Query: 111 VNEVNRLLTI 120 + V L + Sbjct: 1076 LTRVESHLKL 1085 >gi|197123946|ref|YP_002135897.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|220918715|ref|YP_002494019.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|196173795|gb|ACG74768.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] gi|219956569|gb|ACL66953.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 489 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 55/102 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + R + L + G+EV+ ++ +A ++ +E F + L DI MP++ G+E Sbjct: 11 RVLVVDDEPTLLRAMEALLRRKGHEVIGLDSSIAATQRLAQEDFDVALFDIKMPQLSGLE 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L P+++V+ +TG A V + L+KPF Sbjct: 71 LLNAVKHRRPEVEVIMMTGHATVETALAAVRAGAYDYLTKPF 112 >gi|160887771|ref|ZP_02068774.1| hypothetical protein BACUNI_00174 [Bacteroides uniformis ATCC 8492] gi|156862713|gb|EDO56144.1| hypothetical protein BACUNI_00174 [Bacteroides uniformis ATCC 8492] Length = 250 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD +R + L GYEV++ NG + +E+ ++++DI MP M+G Sbjct: 21 KLLLVEDDASLRYIVQGGLEDMIGGYEVIAAANGEEGLKQWKEQHPDVIVSDIEMPVMNG 80 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 E+ +R E D + ++F + AL + K ++ + KPF +L V+ Sbjct: 81 YEMVKRIRETDGETPILF-----SSALISPKDVVKGYEIGANNYIKKPFIPEELDAHVHA 135 Query: 117 LLTI 120 LL + Sbjct: 136 LLKL 139 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281427|gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + L ++L ++GY NGA A + + F LL+ D+ +P+M G+E Sbjct: 2 RILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + +R + L V+ +T ++ ++KPF L +L V L Sbjct: 62 VLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRAL 115 >gi|156743079|ref|YP_001433208.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus castenholzii DSM 13941] gi|156234407|gb|ABU59190.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus castenholzii DSM 13941] Length = 919 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D +R L + L +AG+ VV ++G A + VR++ F L+L DI+MP M G + Sbjct: 7 ILVVDDHDYIRNALARQLERAGHTVVLRSDGIQALEAVRQQAFDLILLDILMPGMRG-DR 65 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + DP L+ V+ I+G + L A L KPF+ L VN L K Sbjct: 66 VLATLKSDPALRHIPVIVISGDQDLDLVAHCIELGAADYLGKPFNATILHARVNACLEQK 125 >gi|323159422|gb|EFZ45405.1| sensor protein evgS domain protein [Escherichia coli E128010] Length = 321 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 85 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 144 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 145 TRKLREQNSSLPIWGLTANA 164 >gi|319758980|gb|ADV70922.1| response regulator [Streptococcus suis JS14] Length = 430 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 46/93 (49%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 V + N A D + L+LTD+ MP+M G+E+ RR E PD ++ ++GF Sbjct: 32 VYTAENAEEALDYFSQHTVDLVLTDVSMPDMTGLEMVRRMKEQSPDTHIIIMSGFQEFEY 91 Query: 89 NPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + L KP + ++L + +L T+K Sbjct: 92 ARKAISLGAMDYLLKPINKQELAKLLQQLPTLK 124 >gi|315652037|ref|ZP_07905038.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986] gi|315485684|gb|EFU76065.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986] Length = 220 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++D+ L K L K Y V + +G A E + L++ D+ MP++DG+E Sbjct: 2 RILICEDEEDILNGLAKGLRKLNYYVDTAVDGEEALSLYFESKYDLVILDLNMPKLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDL 110 + + E D D KV+ ++ + L D A L KPFH ++L Sbjct: 62 VLKAIREDDADSKVIILSARDTLNDKVLGLDLGAN---DYLVKPFHFKEL 108 >gi|313496636|gb|ADR58002.1| GltR [Pseudomonas putida BIRD-1] Length = 239 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ +DDD++R L L AGY V++ +G D++ L++ D+++P D Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L Sbjct: 61 GLSLCRQ-LQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 >gi|308271009|emb|CBX27619.1| hypothetical protein N47_H24410 [uncultured Desulfobacterium sp.] Length = 123 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ ++ L + L E +G A + + + + D+ MP++ GIE Sbjct: 2 KILLVDDEKELVSTLAERLSLRDIEADWVTSGEEAIQNTESKTYDIAVLDVKMPKIGGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK----VLSKPFHLRDLV 111 L ++ E +P LK +FITG + D A N K L KP ++ DLV Sbjct: 62 LKKKLEEKNPGLKYIFITGHGS---EDDFKAASNEKGAEYYLVKPVNIDDLV 110 >gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 224 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 11/125 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL +D++ M L L AGY G A ++EE + L+L DI+MPE DG Sbjct: 2 KKLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPETDGW 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 E+ R+ ++ + V+ +T A PD K K+ +SKPF ++L+ ++ + Sbjct: 62 EVCRQIRKMS-QVPVIMLT---ARTDKPD--VVKGLKIGADDYISKPFDEKELLARIDAV 115 Query: 118 LTIKN 122 L N Sbjct: 116 LRRSN 120 >gi|256395278|ref|YP_003116842.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361504|gb|ACU75001.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 244 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 59/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + L+ +D+ D+ + AL G++ V ++G A ++ D+++P+MDG+ Sbjct: 15 WRFLVVDDEPDLVEVVCGALRHEGWDAVGAHDGREAVSAAATYQPDAVVLDMMLPDMDGM 74 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR P+++V+F+T AV A ++KPF L ++V + L+ Sbjct: 75 EVMRRIHTSRPEVRVLFLTARDAVEDRIAGIAAGGDDYVAKPFSLDEVVVRLRSLV 130 >gi|222147417|ref|YP_002548374.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] gi|221734407|gb|ACM35370.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] Length = 751 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ ++ + L K G +VV +GA A + E F ++L D+ MP MDGIE Sbjct: 494 KILLVEDNRVNQQVASRFLSKLGQDVVVAGDGAQAVARTEREVFDMILMDMQMPVMDGIE 553 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL---SKPF---HLRDLV 111 R E + I A A + D + A ++ SKP LRDL+ Sbjct: 554 ATRHIIERGGASALTPIVAMTANASDDDRRRCRAAGMVGFESKPVTMNRLRDLI 607 >gi|241518474|ref|YP_002979102.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862887|gb|ACS60551.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 472 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++ +LL EDD +R K L + GY V++ + +A V E LLLTDIVM M+ Sbjct: 227 SEAVLLVEDDASVREIHTKMLEELGYSVIAVDGPVTALKIVDERADIRLLLTDIVMAPMN 286 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 G +LA P L V+F ++ NP +A AK ++ Sbjct: 287 GRKLADEVRSKHPHLPVVFPASYS--CRNPRHSAILPAKCVA 326 >gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter sakazakii ATCC BAA-894] gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894] Length = 973 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 852 ILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 911 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R EL L V+ +T A LSKP L Sbjct: 912 TQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 954 >gi|154252497|ref|YP_001413321.1| two component sigma-54 specific Fis family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156447|gb|ABS63664.1| two component, sigma54 specific, transcriptional regulator, Fis family [Parvibaculum lavamentivorans DS-1] Length = 511 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP----FSLLLTDIVM 56 M Q IL+ +DD RR L + + + GY + + G +A + E P SL++ D+VM Sbjct: 1 MTQAILIVDDDPAQRRILEEVVNRDGYRAIPVDGGEAALAYL-EGPGGAEISLVILDLVM 59 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAV 86 P +DG+E+ +R P+L V+ +T + Sbjct: 60 PGIDGMEVLKRVHPNKPNLPVIVLTAHGGI 89 >gi|77548762|gb|ABA91559.1| CCT motif family protein, expressed [Oryza sativa Japonica Group] Length = 699 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 ++LL E DD R+ + L K GY V + +G A+ +RE F L+LT++ MP + G Sbjct: 45 RVLLVEHDDSTRQVVTALLRKCGYRVAAVADGMKAWGVMRERAYAFDLVLTEVTMPTLSG 104 Query: 62 IELARRATELD 72 IEL R D Sbjct: 105 IELLSRIVASD 115 >gi|62182625|ref|YP_219042.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130258|gb|AAX67961.1| response regulator in two-component reguatory system with HydH, regulates hydrogenase 3 activity (EBP family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717122|gb|EFZ08693.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 441 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|56696768|ref|YP_167129.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Ruegeria pomeroyi DSS-3] gi|56678505|gb|AAV95171.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Ruegeria pomeroyi DSS-3] Length = 444 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A + E ++++DI MP MDG++ Sbjct: 6 KIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLGSEYPGIVISDIKMPGMDGMQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVN--RLL 118 ++ D L V+ ITG V + ++ L KPF+ + DL + R L Sbjct: 66 FLKKLMGADSSLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSDLAKRASNARRL 125 Query: 119 TIKN 122 T+ N Sbjct: 126 TLDN 129 >gi|21242421|ref|NP_642003.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107863|gb|AAM36539.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 690 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 Q++L+ EDD+ +R + + L + GY+ + +A + P LL+TD+ +P ++ Sbjct: 570 QQVLVVEDDEQVRLLVTELLSELGYQADVVADADAAL-PILASPRRIDLLVTDVGLPGLN 628 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 629 GRQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVL 686 >gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 230 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 15/120 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ ED+ ++ RF+ L GY +NG S ++ + + L+L D+++PE+DG Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-------LSKPFHLRDLVNEV 114 E+ARR + + D ++ +T DS + A + ++KPF + +L+ V Sbjct: 63 FEVARRLRK-EKDTPIIMMTA-------RDSTMDRVAGLDIGADDYITKPFAIEELLARV 114 >gi|186681380|ref|YP_001864576.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186463832|gb|ACC79633.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1177 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D+ D+R ++ + + GY V + NG + +E SL++TD++MP + G+ Sbjct: 819 HSILVVDDNPDLRTYVSEIFRRNGYYVRTARNGYEGHSLAKEIIPSLIVTDLMMPLVSGL 878 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + R E ++ +T + L+KPF+ R+L+ EV LL + Sbjct: 879 EMIQMIRNEEKLKGTPIILLTAKVDEETRIEGTEHGADAYLAKPFNDRELLAEVRNLLAL 938 Query: 121 K 121 K Sbjct: 939 K 939 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +D+ D L + + Y+V+ +G +A D + +E +++++D MP M G Sbjct: 10 KILVVDDEPDNLDLLYRTFYR-DYKVLRATSGPAALDLLAQEGEVAVIISDQRMPMMSGT 68 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E PD+ + +TG+ V L NA K K ++KP+ +L V + L Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQALDTH 128 Query: 122 N 122 N Sbjct: 129 N 129 >gi|325499643|gb|EGC97502.1| C4-dicarboxylate transport transcriptional regulatory protein [Escherichia fergusonii ECD227] Length = 452 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I+ ED DD+R + L AGY V+SC + ++ ++ ++LTD+ +P + G+EL Sbjct: 10 IIYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSFPLIQSLQNIIVLTDVRLPGISGLEL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+D + V+ ITG V + ++ + KP L++ + R Sbjct: 70 LNYINEMDNKIPVILITGHGDVEMAVEAMRNGAFDFIEKPCSSDKLLSIIAR 121 >gi|302037606|ref|YP_003797928.1| putative flagellar biosynthesis protein FliH with response regulator receiver domain [Candidatus Nitrospira defluvii] gi|300605670|emb|CBK42003.1| putative Flagellar biosynthesis protein FliH with response regulator receiver domain (modular protein) [Candidatus Nitrospira defluvii] Length = 349 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 59/116 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L + L G+ +++ + + A ++ P ++L+ D+ + DGI Sbjct: 27 ILIVDDEPSIGFLLTEMLQSTGHPILTAGSVSEALAHLKSRPIAVLIVDVQLAGTDGIAF 86 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++A E+D L + +TG + L + A L+KPF + + V+RLL + Sbjct: 87 LQQALEVDSRLLSIVMTGHGNIELAVRAMKSGAADFLTKPFEVELVRQSVSRLLEL 142 >gi|289661805|ref|ZP_06483386.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 690 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q++L+ EDD+ +R + + L + GY+ + +A + LL+TD+ +P ++G Sbjct: 570 QQVLVVEDDEQVRLLVTELLSELGYQADVVADADAALPILASPRQIDLLVTDVGLPGLNG 629 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 630 RQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVL 686 >gi|270295066|ref|ZP_06201267.1| two-component system response regulator [Bacteroides sp. D20] gi|270274313|gb|EFA20174.1| two-component system response regulator [Bacteroides sp. D20] Length = 232 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD +R + L GYEV++ NG + +E+ ++++DI MP M+G Sbjct: 3 KLLLVEDDASLRYIVQGGLEDMIGGYEVIAAANGEEGLKQWKEQHPDVIVSDIEMPVMNG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 E+ +R E D + ++F + AL + K ++ + KPF +L V+ Sbjct: 63 YEMVKRIRETDGETPILF-----SSALISPKDVVKGYEIGANNYIKKPFIPEELDAHVHA 117 Query: 117 LLTI 120 LL + Sbjct: 118 LLKL 121 >gi|265753017|ref|ZP_06088586.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] gi|263236203|gb|EEZ21698.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] Length = 1331 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +M+ F+ L + Y V+ +NG A + E+ SL+++D++MPEMDG EL Sbjct: 1084 ILVVEDDPEMQNFICAQL-ETVYCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142 >gi|237711589|ref|ZP_04542070.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] gi|229454284|gb|EEO60005.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] Length = 1331 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +M+ F+ L + Y V+ +NG A + E+ SL+++D++MPEMDG EL Sbjct: 1084 ILVVEDDPEMQNFICAQL-ETVYCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142 >gi|237721722|ref|ZP_04552203.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448591|gb|EEO54382.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1329 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142 Query: 65 ARRATE-LD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + LD + V+ +T + + + KPF + L V LL+ Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLS 1199 >gi|237715465|ref|ZP_04545946.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444174|gb|EEO49965.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1329 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142 Query: 65 ARRATE-LD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + LD + V+ +T + + + KPF + L V LL+ Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLS 1199 >gi|218885804|ref|YP_002435125.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756758|gb|ACL07657.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 448 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 60/107 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++ + +D+ + + L AL K GYEV + + S + + + PF ++ +D+ +P+MDG+E Sbjct: 5 RVAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L + L P+ +V+ +TG+ ++ ++ ++KP + ++ Sbjct: 65 LLPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEI 111 >gi|212695373|ref|ZP_03303501.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855] gi|212662102|gb|EEB22676.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855] Length = 1389 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +M+ F+ L + Y V+ +NG A + E+ SL+++D++MPEMDG EL Sbjct: 1142 ILVVEDDPEMQNFICAQL-ETVYCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1200 >gi|168234404|ref|ZP_02659462.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470992|ref|ZP_03076976.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205354424|ref|YP_002228225.1| transcriptional regulator ZraR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859352|ref|YP_002246003.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194457356|gb|EDX46195.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205274205|emb|CAR39223.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205331650|gb|EDZ18414.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|206711155|emb|CAR35529.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629556|gb|EGE35899.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 441 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 703 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL ED+ ++ L K G +++ +NG A + VR E +SL+L D MPEMDG Sbjct: 563 KRILLVEDNPVNQKLASIQLKKFGLPLLAVSNGREAVEAVRREKYSLILMDCQMPEMDGF 622 Query: 63 ELARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R ++ + + ++ +T A + A +SKP DL +NR + Sbjct: 623 EATREIRRIEAEQGGHVPIVAMTARAMRGDREECLACGMDDYISKPIRSADLRRILNRWI 682 >gi|167553822|ref|ZP_02347566.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168823112|ref|ZP_02835112.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|198244110|ref|YP_002218090.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938626|gb|ACH75959.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321823|gb|EDZ09662.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205340579|gb|EDZ27343.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088604|emb|CBY98363.1| Transcriptional regulatory protein zraR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 441 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 633 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + L K GY+ ++G A + + + L+L D++MPEMDG+E Sbjct: 506 RILIAEDNPINIKLATTILLKLGYQADVAHDGHEALEMCIAKRYDLVLMDVMMPEMDGLE 565 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVN 112 R+ L D+K I A A+ D NA + LSKP ++ L++ Sbjct: 566 ATRQIRLL--DIKQPTIIAMTANAMKEDREKCLNAGMDEYLSKPLNMNLLMS 615 >gi|160896103|ref|YP_001561685.1| response regulator receiver protein [Delftia acidovorans SPH-1] gi|160361687|gb|ABX33300.1| response regulator receiver protein [Delftia acidovorans SPH-1] Length = 120 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL +D MR+ + L AG+ VV +G A +K + E L+L D MP +DGI Sbjct: 2 RSILAVDDSPSMRKMVAFTLAGAGFRVVEAVDGVDALEKAQLEQVDLVLADQNMPRLDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ E DP + ++ +T ++ + A L KPF L+ + +++ Sbjct: 62 GLTRKLRE-DPKFQNTPILILTTESSDQMKQAGRAAGATGWLVKPFDPNRLIEVIQKVM 119 >gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 228 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++ RF+ L GYE NG + + + F ++L D+++PE++GIE Sbjct: 3 RILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQDFDVILLDLMLPELNGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 +ARR E+ ++ +T +V ++ S A + KPF + +L+ V LL Sbjct: 63 VARRVREVKST-PIIMMTARDSV-IDRVSGLDHGADDYIVKPFAIEELLARVRALL 116 >gi|114704557|ref|ZP_01437465.1| nitrogen regulation (two-component response regulator) protein [Fulvimarina pelagi HTCC2506] gi|114539342|gb|EAU42462.1| nitrogen regulation (two-component response regulator) protein [Fulvimarina pelagi HTCC2506] Length = 481 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+A+DD +R + +A+ +AG+EV + +N A+ + + L++TD++MP+ + Sbjct: 1 MVQQILIADDDAAIRTVVSQAMMRAGFEVRATSNIATLWRWISSGEGDLVVTDVLMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + PDL ++ ++ ++ + KPF L +LV V R L Sbjct: 61 VFDSMPKMKNSRPDLPIIVMSAQNTFMTAVKASEKGAYDYVPKPFDLTELVGVVRRAL 118 >gi|117918698|ref|YP_867890.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117611030|gb|ABK46484.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 220 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ LI AL KAGY V NNG EE F ++ D+ +P G+ Sbjct: 2 RLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEETFEAVILDLGLPGKPGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T A D L KPFH+ +L+ + L+ Sbjct: 62 VLSQWRQKGLLMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALI 116 >gi|320352730|ref|YP_004194069.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121232|gb|ADW16778.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 836 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEM 59 ++ ILL ED+ + + + L GY V+ A A RE LLL+D++MPEM Sbjct: 706 SETILLVEDEPSVLQLTKEMLALLGYTVLPAATPAEAIYLAREHEGTIHLLLSDVIMPEM 765 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA + P + +F++G+ A + + + KPF L +V +L Sbjct: 766 NGRDLATHLSAFHPRMVWLFMSGYPADVIAHRGVLDTHVHFIQKPFTAGMLAAKVRAVL 824 >gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13] Length = 242 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D+ + L L +AGY+V +G +K EE F +++ D+++P+ D Sbjct: 1 MNKKILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ + + ++ +T + L D ++KPF R++V Sbjct: 61 GIEVCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADD-------YMTKPFSPREVVAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|284052122|ref|ZP_06382332.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291571292|dbj|BAI93564.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 378 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + +FL L + GY+V NG A + EP L+L DI+MP ++G ++ Sbjct: 13 ILIVDDKPENLQFLFTMLTENGYDVRRVINGKQAINVALFEPPDLILLDIMMPNLNGYDV 72 Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + E D+ ++F++ V+ +SKPF L +++ V LTI Sbjct: 73 CKILKEKSETKDIPIIFLSALKDVSEKVKGFNVGGVDYISKPFELLEILARVENQLTI 130 >gi|283850700|ref|ZP_06367987.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573943|gb|EFC21916.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 651 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILLAED+ + ++ + L G+EVV + G A + +R + F +L DI MPEMDG+E Sbjct: 371 SILLAEDNPINQLYVQELLEMDGHEVVVAHTGRRALEALRRKYFDAILMDIQMPEMDGLE 430 Query: 64 LAR-----RATELDPDLKVMFITGFA 84 R + + DP++ ++ +T A Sbjct: 431 ATRAIRTDQTGDFDPNIPIVALTAHA 456 >gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] Length = 1331 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 992 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1051 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + + I A A+ D A + LSKP + + L Sbjct: 1052 T-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110 Query: 120 I 120 + Sbjct: 1111 V 1111 >gi|251794919|ref|YP_003009650.1| signal transduction histidine kinase, LytS [Paenibacillus sp. JDR-2] gi|247542545|gb|ACS99563.1| signal transduction histidine kinase, LytS [Paenibacillus sp. JDR-2] Length = 1112 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 10/125 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61 KILL +DD + L + + Y V NG A +++ SL+L D++MP + G Sbjct: 772 KILLVDDDSSNIKVLQELFPSSRYHVFVAYNGEDALKLIKQHRGELSLVLLDVMMPGLSG 831 Query: 62 IELARRATELDP--DLKVMFIT---GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ RR E +P L V+ +T A +AL ++ A L KPF ++L+ V Sbjct: 832 YEVCRRIREENPLYQLPVLLLTVRNSPADIALGFEAGA---NDFLVKPFSGKELLARVQT 888 Query: 117 LLTIK 121 LL +K Sbjct: 889 LLQMK 893 >gi|229590586|ref|YP_002872705.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229362452|emb|CAY49358.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25] Length = 409 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R+ L L GY+ ++ +G A V ++P L+L DI+MP MDG E+ Sbjct: 8 LLIVDDEPQVRKLLETLLQHEGYQTLTAGSGEEALQLVAQQPPDLILLDIMMPGMDGYEV 67 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 A + E + ++ ++ + + + + +SKP +L V LL +K Sbjct: 68 ASQLKGDETTAGIPIIMLSALSEPSARVNGLEAGAEEFISKPVERVELWLRVRNLLRLK 126 >gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] Length = 1342 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 862 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 921 Query: 62 IELARRATEL 71 IEL R L Sbjct: 922 IELLTRVKTL 931 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 1003 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1062 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + + I A A+ D A + LSKP + + L Sbjct: 1063 T-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1121 Query: 120 IKN 122 + + Sbjct: 1122 VSD 1124 >gi|224538556|ref|ZP_03679095.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM 14838] gi|224519824|gb|EEF88929.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM 14838] Length = 1367 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 43/64 (67%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++++ +L + L + Y +++ NG AYD + + L+++DI+MPEMDG+ Sbjct: 1116 RILIVEDEEEILSYLKEEL-EGDYRIMTRKNGREAYDTILADTPDLVISDIMMPEMDGLS 1174 Query: 64 LARR 67 L R+ Sbjct: 1175 LCRK 1178 >gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 227 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++ + R + L GYE G A +K ++L+L D+++P + Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|161702976|ref|YP_371670.2| DNA-binding response regulator CreB [Burkholderia sp. 383] Length = 236 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q IL+ ED+ + +I ALG G + V C G +A D +R+ F L+ D+ +P++ Sbjct: 1 MHQPNILIVEDEVAIADTIIYALGTDGMQTVHCTLGQAALDHLRDTRFDLVALDVGLPDL 60 Query: 60 DGIELARRATELDPDLKVMFITG 82 G E+ RR D+ V+F+T Sbjct: 61 SGFEVCRRLRTFS-DVPVIFLTA 82 >gi|188579324|ref|YP_001922769.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342822|gb|ACB78234.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 681 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMD 60 + +LL EDD+ + +++L + Y V+ N A A + + E +L +D+VMP M+ Sbjct: 559 ETVLLVEDDEQVLGMAVESLEELRYRVIVTRNAAEALEHLHGVERIDILFSDVVMPGGMN 618 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + PD+K++ +G+ A VL+KP+ +L + +L Sbjct: 619 GSQLAVEARRVRPDIKILLTSGYVANLDEGQVLGRGELPVLNKPYRRDELARSLRLVL 676 >gi|297578654|ref|ZP_06940582.1| response regulator [Vibrio cholerae RC385] gi|297536248|gb|EFH75081.1| response regulator [Vibrio cholerae RC385] Length = 368 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 86 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 87 VEEVSSSYPSLPLVVVSATEEMA 109 >gi|254226380|ref|ZP_04919968.1| response regulator [Vibrio cholerae V51] gi|125621069|gb|EAZ49415.1| response regulator [Vibrio cholerae V51] Length = 368 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 86 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 87 VEEVSSSYPSLPLVVVSATEEMA 109 >gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 1331 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MD Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMD 1049 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GI A +P + + I A A+ D A + LSKP + + Sbjct: 1050 GIT-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 1108 Query: 118 LTIKN 122 L + + Sbjct: 1109 LQVSD 1113 >gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 1331 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 992 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1051 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + + I A A+ D A + LSKP + + L Sbjct: 1052 T-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNEHLSKPIEVDKFYQVLRHFLQ 1110 Query: 120 IKN 122 + + Sbjct: 1111 VSD 1113 >gi|16767428|ref|NP_463043.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161617313|ref|YP_001591278.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994976|ref|ZP_02576066.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|20141880|sp|P25852|ZRAR_SALTY RecName: Full=Transcriptional regulatory protein zraR gi|6960346|gb|AAF33506.1| Salmonella typhimurium transcriptional regulatory protein (HYDG) (SW:P25852); contains similarity to Pfam domain PF00158 (sigma54), Score=609.2, E=2.4e-179, N=1 and PF00072 (response_reg), Score=158, E=1.6e-43, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422733|gb|AAL23002.1| response regulator in two-component reguatory system with HydH [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161366677|gb|ABX70445.1| hypothetical protein SPAB_05164 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205327257|gb|EDZ14021.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249278|emb|CBG27140.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996475|gb|ACY91360.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160670|emb|CBW20201.1| transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915280|dbj|BAJ39254.1| transcriptional regulator ZraR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223374|gb|EFX48441.1| Response regulator of zinc sigma-54-dependent two-component system [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132510|gb|ADX19940.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990993|gb|AEF09976.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 441 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] Length = 1331 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MD Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMD 1049 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GI A +P + + I A A+ D A + LSKP + + Sbjct: 1050 GIT-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 1108 Query: 118 LTIKN 122 L + + Sbjct: 1109 LQVSD 1113 >gi|332880752|ref|ZP_08448424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681260|gb|EGJ54185.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 937 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ ED+ D R +L+ + ++VV +GA + VREE L+++D++MP+ DGI Sbjct: 680 KKLLIVEDNADFRAYLVHEF-SSDFDVVEAGDGAEGEEMVREEWPDLVISDLMMPKRDGI 738 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 +R + D+ I A D ++ K +SKPF+ L V +L Sbjct: 739 AFCQR---MKNDIHTSHIPFILLTAKMSDDARIESYKAGADSYISKPFNFEMLQVRVQKL 795 Query: 118 L 118 + Sbjct: 796 I 796 >gi|296451012|ref|ZP_06892757.1| type 4 fimbriae expression regulatory protein [Clostridium difficile NAP08] gi|296879023|ref|ZP_06903020.1| type 4 fimbriae expression regulatory protein [Clostridium difficile NAP07] gi|296260143|gb|EFH06993.1| type 4 fimbriae expression regulatory protein [Clostridium difficile NAP08] gi|296429976|gb|EFH15826.1| type 4 fimbriae expression regulatory protein [Clostridium difficile NAP07] Length = 440 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +D+ + + K L K GY V +G A + ++++ + L+L+D++M MDG+ Sbjct: 2 KILIVDDELEYGVVMKKILQKKGYLVDVTLSGEEAINIIKKDKNYDLVLSDVMMKNMDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +L R ++ D++V+ +TG+ ++ D+ K + +L+ EV ++ T K Sbjct: 62 QLLDRIKAINKDIEVILVTGYGSIENAVDAMKKGALSYFIKSNPIENLLEEVEKVKTSK 120 >gi|293404288|ref|ZP_06648282.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412] gi|300896367|ref|ZP_07114909.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1] gi|331662402|ref|ZP_08363325.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143] gi|291428874|gb|EFF01899.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412] gi|300359778|gb|EFJ75648.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1] gi|331060824|gb|EGI32788.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143] Length = 900 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNNSGAQVVAVGNAAQALEALQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ D+R + + L +GY V + +GA+ D + + L++ DI +P +DG Sbjct: 2 KLLVVEDEQDLRESIAEGLRLSGYAVDTAADGAAGEDMLAAGNYDLVVLDINLPYLDGFT 61 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R ++ +++V+ +T + L+ +N L KPFH +L + LL Sbjct: 62 LLERLRAVNKEIRVIILTARTDIDDLVRGLDTGAN-----DYLVKPFHFVELEARIRSLL 116 >gi|304317395|ref|YP_003852540.1| response regulator receiver protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778897|gb|ADL69456.1| response regulator receiver protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 193 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 50/106 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+A+D ++R L L GY V++ NG A D +++ L DI MP + G Sbjct: 2 KKVLVADDTKNIRILLTTCLESDGYIVITAKNGEEALDILKKGDVDLAFIDIKMPLLSGT 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 E+ R V+ IT FA + + + + KPF ++ Sbjct: 62 EVLREIRSNGITTPVIIITAFATIKNAIECTKLGAVEYIQKPFTVK 107 >gi|239909030|ref|YP_002955772.1| chemotaxis protein CheY [Desulfovibrio magneticus RS-1] gi|239798897|dbj|BAH77886.1| chemotaxis protein CheY [Desulfovibrio magneticus RS-1] Length = 128 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D MR L K LG G EV+ ++G A + + EP +++D MP M GI+ Sbjct: 6 RILVVDDSKVMRGVLRKMLGCDGTEVLEAHDGKHALEVLAVEPVDCVISDWNMPRMKGID 65 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R R L + +T A +++A + L+KPF DL + +L Sbjct: 66 LLRQVRQDAALAHLPFVMVTAEAMAQNVAEADAASVSAYLTKPFTAEDLWTTLRGIL 122 >gi|237725951|ref|ZP_04556432.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. D4] gi|229435759|gb|EEO45836.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides dorei 5_1_36/D4] Length = 1331 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +M+ F+ L + Y V+ +NG A + E+ SL+++D++MPEMDG EL Sbjct: 1084 ILVVEDDPEMQNFICAQL-ETVYCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142 >gi|255033828|ref|YP_003084449.1| response regulator receiver protein [Dyadobacter fermentans DSM 18053] gi|254946584|gb|ACT91284.1| response regulator receiver protein [Dyadobacter fermentans DSM 18053] Length = 125 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 6/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+AED ++ K L YE+ S NG + +E F ++L DI MP MDG Sbjct: 4 TKRVLIAEDSSVIQNLARKILEFQHYEITSVKNGEQVLQLLEKEDFDIILLDINMPVMDG 63 Query: 62 IELARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +E AR +L PD K ++ ITG A + D L KP + LV V Sbjct: 64 MECARSIRKL-PDEKKAKTPIVAITGNAKNYSDEDFKDAGFDDALMKPLNFDRLVEVVAH 122 Query: 117 L 117 L Sbjct: 123 L 123 >gi|255305466|ref|ZP_05349638.1| response regulator receiver modulated metal dependent phosphohydrolase [Clostridium difficile ATCC 43255] Length = 546 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 3/64 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 QKIL+ DD +M R L+ + + Y++V NNGA A + + FSLLL DI+MPEMD Sbjct: 4 QKILIV-DDSEMNRSLLIDILENQYDIVEANNGAEAITILSQHRTDFSLLLLDIMMPEMD 62 Query: 61 GIEL 64 G E+ Sbjct: 63 GFEV 66 >gi|239623833|ref|ZP_04666864.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521864|gb|EEQ61730.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 259 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%) Query: 5 ILLAEDDDDMRRFL-----IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +L+ ED+ +RR + LG G+ NG A D +R L+L DI MP+M Sbjct: 4 LLIVEDESLIRRGIRAFIDFDGLGIGGF--FEAENGEEALDTIRRHHIDLILADINMPKM 61 Query: 60 DGIELARRATELDPDLKVMFITGF 83 +G++ A E DP +K+ +TG+ Sbjct: 62 NGLDFCLLAKEWDPSIKIAILTGY 85 >gi|170077528|ref|YP_001734166.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC 7002] gi|169885197|gb|ACA98910.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC 7002] Length = 376 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD MR L + L + GY+V + ++G + D L+++D +MPEM+GIE Sbjct: 3 QILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIATRPDLIISDWMMPEMNGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + +A + PDL F +A+ Sbjct: 63 VC-QAVKQHPDLSTTFFILLSAL 84 >gi|168239600|ref|ZP_02664658.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736973|ref|YP_002117075.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712475|gb|ACF91696.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287727|gb|EDY27118.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322616283|gb|EFY13193.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617274|gb|EFY14176.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625954|gb|EFY22769.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626648|gb|EFY23450.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631483|gb|EFY28240.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635196|gb|EFY31914.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642599|gb|EFY39195.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646810|gb|EFY43314.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650808|gb|EFY47201.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655892|gb|EFY52193.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657291|gb|EFY53570.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665553|gb|EFY61738.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669736|gb|EFY65881.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670985|gb|EFY67117.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679191|gb|EFY75244.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679349|gb|EFY75396.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322688116|gb|EFY84080.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195791|gb|EFZ80966.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200696|gb|EFZ85769.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202185|gb|EFZ87241.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209296|gb|EFZ94231.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211621|gb|EFZ96458.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218041|gb|EGA02754.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221330|gb|EGA05752.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225743|gb|EGA09964.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230969|gb|EGA15086.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235751|gb|EGA19833.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240065|gb|EGA24111.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242602|gb|EGA26624.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249690|gb|EGA33597.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252573|gb|EGA36414.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256933|gb|EGA40645.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262044|gb|EGA45608.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323263950|gb|EGA47464.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268437|gb|EGA51907.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 441 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|220923418|ref|YP_002498720.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219948025|gb|ACL58417.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 662 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 7/111 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDG 61 +ILL ED+D + L + G+ VVS ++ A A + +PF L+L+D+VMP + G Sbjct: 522 RILLVEDNDQVAAVAASVLMERGHSVVSASSAAEALRVLNAGQPFDLVLSDLVMPGGLSG 581 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLV 111 +LAR P L V+ TG++ A + A K ++SKP+ LV Sbjct: 582 FDLARHVQSRWPALPVLLATGYSDQA----AKAVKEGFPLISKPYEPAALV 628 >gi|163782726|ref|ZP_02177722.1| transcriptional regulator (NtrC family) protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881847|gb|EDP75355.1| transcriptional regulator (NtrC family) protein [Hydrogenivirga sp. 128-5-R1-1] Length = 441 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D R L + L GY+ + AY+ + E FS++L D+ +P+ +G+E Sbjct: 2 RVLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L + E +V+ ITG + ++ L+KP L+++ Sbjct: 62 LLKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEV 108 >gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] Length = 223 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++P DG E Sbjct: 2 RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + E + V+ +T + V L KPF LR+L+ V L+ K+ Sbjct: 62 ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120 >gi|91202235|emb|CAJ75295.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 271 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 2 NQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 NQ +IL+ ED + R L + + + G+ + NG SA KVRE+P ++L DI+MPEMD Sbjct: 3 NQARILIVEDKESNRNILNERINELGHISILAENGLSALAKVREQPPDIILLDIMMPEMD 62 Query: 61 GIEL 64 G E+ Sbjct: 63 GYEV 66 >gi|58039114|ref|YP_191078.1| histidine kinase-response regulator hybrid protein [Gluconobacter oxydans 621H] gi|58001528|gb|AAW60422.1| Histidine kinase-response regulator hybrid protein [Gluconobacter oxydans 621H] Length = 1210 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 2/105 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-MD 60 Q++L+ +D++ +R + + G V++ ++G SA E P ++L++DI MP M+ Sbjct: 1090 QRVLVVDDEEAVRMIVSDMVTDLGGIVLTASDGPSAEALAAEGAPPAVLISDIGMPGGMN 1149 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G EL + P LKV+FITG+A ++ D +L KPF Sbjct: 1150 GRELGEHMLKRWPGLKVLFITGYAEQSVLGDQALAPGCALLVKPF 1194 >gi|67922646|ref|ZP_00516151.1| Response regulator receiver:GAF [Crocosphaera watsonii WH 8501] gi|67855494|gb|EAM50748.1| Response regulator receiver:GAF [Crocosphaera watsonii WH 8501] Length = 310 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD MR L A+ + GY + NG + ++ +L+L D +MPEMDG Sbjct: 13 ILIVDDDRTMRNLLKIAMEEEGYRAIEAKNGDQCLQEYKDHKPNLVLLDAIMPEMDGFTC 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ E + +L ++ IT + A ++KP L VN LL Sbjct: 73 CQKLRSLEDNKNLPILMITALDDQDSIDQAFAAGATDYITKPIFWSVLSQRVNYLL 128 >gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LL +DD + L + L G+EV + +G + ++ L+L DI MP +D Sbjct: 1 MATRVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR L D+ ++ +T A+ L D P KPF +LV Sbjct: 61 GLELCRRLHVLG-DIAIIMLTARDDVADKVHALGLGADDYVP-------KPFSFDELVAR 112 Query: 114 VNRLL 118 + +L Sbjct: 113 MRAVL 117 >gi|262408473|ref|ZP_06085019.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294810661|ref|ZP_06769310.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262353338|gb|EEZ02432.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294442130|gb|EFG10948.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1322 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL Sbjct: 1077 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1135 Query: 65 ARRATE-LD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + LD + V+ +T + + + KPF + L V LL+ Sbjct: 1136 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLS 1192 >gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] Length = 1331 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 992 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1051 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + + I A A+ D A + LSKP + + L Sbjct: 1052 S-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110 Query: 120 IKN 122 + + Sbjct: 1111 VSD 1113 >gi|256371864|ref|YP_003109688.1| response regulator receiver and ANTAR domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008448|gb|ACU54015.1| response regulator receiver and ANTAR domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 203 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 2/112 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ ++++AED+ +RR L + L GYEVV+ G A + + L + DI MP + Sbjct: 1 MSARVIIAEDEAIVRRDLREMLELEGYEVVADLGRGDEALEAIGALKPDLAVLDIKMPGL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 DG+++ARR P + V+ +T F+ AL ++ L KPF +LV Sbjct: 61 DGLDVARRVQGSVP-VAVVILTAFSQRALVEEARDAGVMAYLVKPFQAGELV 111 >gi|226226572|ref|YP_002760678.1| putative NtrC family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089763|dbj|BAH38208.1| putative NtrC family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 457 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 6/108 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMP 57 M ++IL+ +D+ +R+ L + L G++V + + GA YD R + L+ D+ M Sbjct: 1 MTRRILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQ---LVFLDVKMA 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +DG+E+ +R + DP+ V+ I+G A + ++ +L KP Sbjct: 58 GLDGLEVLKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPL 105 >gi|224536547|ref|ZP_03677086.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM 14838] gi|224521803|gb|EEF90908.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM 14838] Length = 1356 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ ED++++R++L L Y V C+NG A + + L+++D++MP MDGI Sbjct: 1109 RTLLVVEDNNEIRQYLKSKLATI-YNVFDCDNGHEALEIIHRREIDLVISDVMMPVMDGI 1167 Query: 63 ELA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + E++ + V+ +T + D + + KPF+ L+ + LL Sbjct: 1168 ELCKAIKSNIEIN-HIPVILLTAHVSDTHVKDGLSSGANDYVFKPFNFDLLLARIQNLL 1225 >gi|197262022|ref|ZP_03162096.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240277|gb|EDY22897.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 441 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|241206979|ref|YP_002978075.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860869|gb|ACS58536.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 250 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+EL Sbjct: 10 IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGMEL 69 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D ++KPF R LV V + Sbjct: 70 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVRAV 121 Query: 118 L 118 L Sbjct: 122 L 122 >gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 1331 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 992 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1051 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + I A A+ D A + LSKP + + L Sbjct: 1052 T-ATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110 Query: 120 IKN 122 + + Sbjct: 1111 VSD 1113 >gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] Length = 1331 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MD Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMD 1049 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GI A +P + + I A A+ D A + LSKP + + Sbjct: 1050 GIT-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 1108 Query: 118 LTIKN 122 L + + Sbjct: 1109 LQVSD 1113 >gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 1331 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 992 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1051 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + + I A A+ D A + LSKP + + L Sbjct: 1052 T-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110 Query: 120 IKN 122 +++ Sbjct: 1111 VRD 1113 >gi|254975419|ref|ZP_05271891.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092806|ref|ZP_05322284.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314548|ref|ZP_05356131.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517223|ref|ZP_05384899.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650329|ref|ZP_05397231.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306520295|ref|ZP_07406642.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 232 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E ++ L D+++P++ Sbjct: 1 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + E + ++ +T A + + KPF +++L+ V+ LL Sbjct: 61 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALL 119 >gi|71280148|ref|YP_268242.1| flagellar regulatory protein C [Colwellia psychrerythraea 34H] gi|71145888|gb|AAZ26361.1| flagellar regulatory protein C [Colwellia psychrerythraea 34H] Length = 446 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 57/116 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD +R LI L A Y V ++G +A ++ + ++++D+ M M G+ Sbjct: 4 HKILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQHVDIVISDVQMGGMSGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + +L V+ +T F + + ++KPF + L+N V++ + Sbjct: 64 SLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYI 119 >gi|26987013|ref|NP_742438.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24981631|gb|AAN65902.1|AE016218_4 DNA-binding response regulator GltR [Pseudomonas putida KT2440] Length = 239 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ +DDD++R L L AGY V++ +G D++ L++ D+++P D Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L Sbjct: 61 GLSLCRQ-LQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 >gi|148264953|ref|YP_001231659.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398453|gb|ABQ27086.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 459 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 56/107 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++ R L+ L G+ + C +G + + F ++++D+ +P++ GI+ Sbjct: 6 KILLIEDEEPSREALLLLLKGNGFSIKGCGSGMEGLRLMETDRFDIVISDLFLPDISGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + ++ + P +V+ ITG A+ + ++KP ++ +L Sbjct: 66 ILQQIKDSSPHTEVILITGHASAETAVKAMKEGAFDYITKPLNIDEL 112 >gi|84393277|ref|ZP_00992038.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01] gi|84376102|gb|EAP92989.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +DD + L + L GY V + + G SA + ++ P L+L D+++P + Sbjct: 1 MMSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSHPVDLVLLDVMLPNLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++ARR + ++ +T A D + ++KPF++ +L+ + +L Sbjct: 61 GIQVARRICQRFAT-PILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVIL 117 >gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] Length = 1113 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 633 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 692 Query: 62 IELARRATEL 71 IEL R L Sbjct: 693 IELLTRVKTL 702 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MD Sbjct: 772 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMD 831 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GI A +P + + I A A+ D A + LSKP + + Sbjct: 832 GIT-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 890 Query: 118 LTIKN 122 L + + Sbjct: 891 LQVSD 895 >gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] Length = 1331 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 851 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910 Query: 62 IELARRATEL 71 IEL R L Sbjct: 911 IELLTRVKTL 920 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 992 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1051 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + I A A+ D A + LSKP + + L Sbjct: 1052 T-ATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110 Query: 120 IKN 122 + + Sbjct: 1111 VSD 1113 >gi|241764937|ref|ZP_04762937.1| response regulator receiver protein [Acidovorax delafieldii 2AN] gi|241365499|gb|EER60264.1| response regulator receiver protein [Acidovorax delafieldii 2AN] Length = 142 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 11/126 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEV---VSCNNGASAYDKVREEPFSLLLTDIVMP 57 M Q+IL+ ED D+RR + L +E+ V+ + G +A ++R + LLL DI+MP Sbjct: 15 MTQRILIIEDHADIRRLIRMTLEFEDHEIHEAVNADEGLAAVRRIRPQ---LLLLDIMMP 71 Query: 58 -EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNE 113 MDG++L R DP L + A + D A NA L KPF L+ Sbjct: 72 GTMDGLDLCRLVKS-DPSLGQPLVVLLTARGQSQDIEAGNNAGADAYLLKPFSPLKLIET 130 Query: 114 VNRLLT 119 +N L T Sbjct: 131 INNLGT 136 >gi|238750772|ref|ZP_04612270.1| Nitrogen regulation protein NR(I) [Yersinia rohdei ATCC 43380] gi|238710916|gb|EEQ03136.1| Nitrogen regulation protein NR(I) [Yersinia rohdei ATCC 43380] Length = 470 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG V+ ++G D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCVTFDSGNQVLDALATQTPDVLLSDIRMPGMDGLTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 1711 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ DMR +L++ LG Y+V + +G A D +P L+++D++MP +DG+ Sbjct: 627 RVLVADDNADMRGYLLRLLGPH-YDVRAVADGRQALDAALADPPDLVVSDVMMPGLDGMG 685 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L A RA + V+ ++ A + A L KPF ++L+ V Sbjct: 686 LLAALRAEPRTARVPVVLLSARAGEEAAVEGLAAGADDYLVKPFSAQELLARV 738 >gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135] gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135] Length = 1325 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q ILL ED++DM + L+ L Y+V NG DK EE L+++D++MP M G Sbjct: 1067 QTILLVEDNEDMLQVLVDMLSPL-YKVKIAMNGQEGLDKALEESPDLIISDVMMPVMSGT 1125 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 E+ + L + I AL D + K + + KPF+ + L+ ++ + Sbjct: 1126 EMCMK---LKTNFNSSHIPVILLTALTSDDSKLKGVQCGADDYVEKPFNHKILLGKIANI 1182 Query: 118 L 118 L Sbjct: 1183 L 1183 >gi|158336874|ref|YP_001518049.1| response regulator [Acaryochloris marina MBIC11017] gi|158307115|gb|ABW28732.1| response regulator [Acaryochloris marina MBIC11017] Length = 121 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 8/117 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +D L + L + GY +V+ NG A +KV + ++TD +MPEM Sbjct: 1 MSSKILVVDDLQSELDLLCQYLTEEGYTIVTATNGTEALEKVSQNKPDAIVTDWMMPEMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVN 112 G++LAR+ + +PD I A A N D + AK ++KP ++LV+ Sbjct: 61 GLDLARKLRK-NPD--TADIPVVACTAKNRDVDRMWAAKQGVEAYVTKPCTKQELVS 114 >gi|148728193|gb|ABL96292.2| histidine kinase [Pseudomonas fluorescens] Length = 778 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G +VV +GA A D++ + F L+L D MP MDG E Sbjct: 656 RVLLVEDNPVNQLVAKGMLGKLGCDVVVAAHGAEALDQLEHDEFDLVLMDCNMPVMDGYE 715 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R R + P L ++ +T A A + L+KPF +L Sbjct: 716 ASRQIRQSGRWPHLPIVALTANAMSEERERCRAAGMSDYLAKPFRREEL 764 >gi|88603927|ref|YP_504105.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1] gi|88189389|gb|ABD42386.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1] Length = 385 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 6 LLAEDDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD + R+L+ K L GY V+S +G A + +R E L+++DI++P+MDG +L Sbjct: 3 VLIVDDQYINRYLLEKLLTGYGYSVLSTEDGMQALETLRTEHVDLIISDILLPKMDGFQL 62 Query: 65 ARRATELDPDL-KVMFITGFAAVALNPD 91 R + DP+L K+ FI AA D Sbjct: 63 CREVKK-DPELAKIPFIFYTAAYTEQKD 89 >gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 238 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+AEDD +R L+ L GY V++ +G A E F L L DI+MP +G Sbjct: 4 SRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGY 63 Query: 63 ELARRATELDPDLKVMFIT 81 ++ R DP L ++ +T Sbjct: 64 DVCRELRRRDPALAIIMLT 82 >gi|154142|gb|AAA27149.1| hydrogenase G [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 441 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|33596115|ref|NP_883758.1| two-component response regulator [Bordetella parapertussis 12822] gi|33601513|ref|NP_889073.1| two-component response regulator [Bordetella bronchiseptica RB50] gi|33573118|emb|CAE36762.1| two-component response regulator [Bordetella parapertussis] gi|33575949|emb|CAE33028.1| two-component response regulator [Bordetella bronchiseptica RB50] Length = 208 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ + + +DD+ +R L L GY V + +G + D+ +L+ D+ MP M Sbjct: 6 LSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGENFLDEYDASQIGVLIADVRMPGMS 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL + + L ++FITG V + + L KPF+ DL V R+L Sbjct: 66 GLELQEQLIARNAPLPIVFITGHGDVPMAVSTMKKGAVDFLEKPFNESDLREIVARML 123 >gi|32475887|ref|NP_868881.1| two-component system response regulator [Rhodopirellula baltica SH 1] gi|32446430|emb|CAD76258.1| two-component system response regulator [Rhodopirellula baltica SH 1] Length = 239 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD R L + LG GY+V + +G SA + + F L+ D++MP G + Sbjct: 3 RILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSGFD 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R D V+FIT + L D +SKPF +++ V Sbjct: 63 VCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADD-------YISKPFGSHEVIARVKA 115 Query: 117 LL 118 +L Sbjct: 116 VL 117 >gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 242 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD M + L GY V NG A E FS D+++PEM G E Sbjct: 20 KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + L V+ +T AV L DS A L+KPF + + L+ Sbjct: 80 ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGAD---DYLTKPFAFAEFAARIRALV 134 >gi|113968585|ref|YP_732378.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114049267|ref|YP_739817.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113883269|gb|ABI37321.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890709|gb|ABI44760.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 220 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ LI AL KAGY V NNG EE F ++ D+ +P G+ Sbjct: 2 RLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEEAFEAVILDLGLPGKPGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T A D L KPFH+ +L+ + L+ Sbjct: 62 VLSQWRQKGLLMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALI 116 >gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 224 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ D+ + L + L Y V SC +G +A D + + +++ DI+MP+ DG+ Sbjct: 2 RILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + + V+ +T +V L KPF +L+ + LL Sbjct: 62 VLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLL 116 >gi|313113267|ref|ZP_07798877.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624420|gb|EFQ07765.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 263 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMP 57 M K+L+AED+ R+ L + L K +++S NG A + E + + DI MP Sbjct: 1 MKCKLLVAEDELIERKVLCRTLQKYLGDLISLYEAKNGREALEIFAREAPQVAVLDIEMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + G+E+AR+ E D + ++F+TGF + + + L KP++ ++LV V Sbjct: 61 GLTGLEVARKIRETDKNCAILFLTGFDKFDYARQAISVRAMDYLLKPYNEQELVFAVE 118 >gi|289648219|ref|ZP_06479562.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 763 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F L + G++V+ + A A ++ P F ++ +DI MP M G+ Sbjct: 642 VLMVEDNQDIGTFTRPMLEQLGFQVLWVKSAAEALHELSGNPENFHVVFSDIAMPGMSGL 701 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL+ P + V+ TG++ + +L KP+ DL ++R ++ Sbjct: 702 ELSAEIEACYPWMPVVLTTGYSTEFATIAKDEAHRFDLLQKPYSREDLAAILHRAVS 758 >gi|260774777|ref|ZP_05883680.1| nitrogen regulation protein NR(I) [Vibrio coralliilyticus ATCC BAA-450] gi|260609339|gb|EEX35491.1| nitrogen regulation protein NR(I) [Vibrio coralliilyticus ATCC BAA-450] Length = 467 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 58/115 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R + K L A + + ++ S + E +L++DI MP +DGIEL Sbjct: 6 VWVVDDDSSIRWVMEKTLSSANIKCDTFSDAESVLLALERETPDVLVSDIRMPGIDGIEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ E PDL V+ +T + + ++ + L KPF + + + V R +T Sbjct: 66 LKQVNERSPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPKPFDVDETLTLVERAIT 120 >gi|260171688|ref|ZP_05758100.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1445 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G +EVV+ +G S +++ + L++ D++MP M G Sbjct: 1169 RKVLIIEDDNDVREFLKEEIGHY-FEVVAEADGISGFERAQTYDADLIICDVLMPGMTGF 1227 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 E+ ++ L + I ALN + + + ++KPF + L+ +++L Sbjct: 1228 EVTKK---LKNEFATSHIPIILLTALNMEEKYLEGIESGADAYITKPFSISLLLARISKL 1284 Query: 118 L 118 + Sbjct: 1285 I 1285 >gi|256850843|ref|ZP_05556232.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661054|ref|ZP_05861968.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282934486|ref|ZP_06339741.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|297205717|ref|ZP_06923112.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615905|gb|EEU21093.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547991|gb|EEX23967.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281301433|gb|EFA93722.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|297148843|gb|EFH29141.1| response regulator [Lactobacillus jensenii JV-V16] Length = 240 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L YE V NNG D E F +L D+++P+++G+E Sbjct: 3 KILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNGLE 62 Query: 64 LARRATEL 71 +ARR ++ Sbjct: 63 IARRVRQV 70 >gi|222084237|ref|YP_002542763.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221721685|gb|ACM24841.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 249 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+EL Sbjct: 10 IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGMEL 69 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D ++KPF R LV V + Sbjct: 70 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVKAV 121 Query: 118 L 118 L Sbjct: 122 L 122 >gi|218460975|ref|ZP_03501066.1| two-component response regulator protein [Rhizobium etli Kim 5] gi|218671631|ref|ZP_03521300.1| two-component response regulator protein [Rhizobium etli GR56] Length = 251 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+EL Sbjct: 10 IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGMEL 69 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D ++KPF R LV V + Sbjct: 70 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVRAV 121 Query: 118 L 118 L Sbjct: 122 L 122 >gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 233 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED++ + F+ K L + GY V + +NG A +K+ + + L++ DI++P DG++ Sbjct: 2 RILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVKDGLK 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R E ++ +T + D NA L KPF +L+ + +L Sbjct: 62 VCREVRENGISTPILMLTALDS---TEDKVTGLNAGADDYLVKPFSFSELLARIRAIL 116 >gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 247 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + R L L K G+ +G +A EP+ ++ DI++P++D Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ + A+ L D ++KPF R+L+ Sbjct: 68 GIEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADD-------YVTKPFSPRELLAR 120 Query: 114 VNRLL 118 V +L Sbjct: 121 VKAIL 125 >gi|189220210|ref|YP_001940850.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] gi|189187068|gb|ACD84253.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] Length = 223 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 49/100 (49%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ EDD +R+ L AL GY V C +G A + + L + D+++P DGI + Sbjct: 1 MIVEDDQKVRKHLKGALQAEGYTVEECEDGEEAQWLLENYNYDLAILDLMLPAKDGISIV 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 R+ + V+F++G +AV+ L+KPF Sbjct: 61 RQLRRQGLSIPVLFLSGRSAVSDRVHGLDAGGDDYLTKPF 100 >gi|204931260|ref|ZP_03222020.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204319875|gb|EDZ05082.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 441 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPAIPILIMTAFSSV 89 >gi|167746905|ref|ZP_02419032.1| hypothetical protein ANACAC_01617 [Anaerostipes caccae DSM 14662] gi|167653865|gb|EDR97994.1| hypothetical protein ANACAC_01617 [Anaerostipes caccae DSM 14662] Length = 223 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ EDD ++ R + AL K GY++ S + A R+E L+L D+ +P+ +G Sbjct: 2 QKILIVEDDRELNRTICYALKKEGYDIYSAYSVCEAKAIYRQEKMELILLDVNLPDGEGF 61 Query: 63 ELARRATELDPDLKVMFITG--FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + ++ V+F+T AL + ++ ++KPF +R L ++ +L Sbjct: 62 SLC-RWMKGQREVPVLFLTARDLEEDALEGYGSGAED--YITKPFSIRILKEKIRVVL 116 >gi|146319564|ref|YP_001199276.1| response regulator [Streptococcus suis 05ZYH33] gi|145690370|gb|ABP90876.1| Response regulator [Streptococcus suis 05ZYH33] gi|292559178|gb|ADE32179.1| Response regulator [Streptococcus suis GZ1] Length = 440 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 46/93 (49%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 V + N A D + L+LTD+ MP+M G+E+ RR E PD ++ ++GF Sbjct: 42 VYTAENAEEALDYFSQHTVDLVLTDVSMPDMTGLEMVRRMKEQSPDTHIIIMSGFQEFEY 101 Query: 89 NPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + L KP + ++L + +L T+K Sbjct: 102 ARKAISLGAMDYLLKPINKQELAKLLQQLPTLK 134 >gi|39996418|ref|NP_952369.1| response regulator [Geobacter sulfurreducens PCA] gi|39983298|gb|AAR34692.1| response regulator [Geobacter sulfurreducens PCA] gi|298505427|gb|ADI84150.1| response regulator sensor, GAF domain-containing [Geobacter sulfurreducens KN400] Length = 324 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ++ R F+ L GY V S +G A +V PF +L+TDI +P M G+ Sbjct: 8 QVLVVDESAPSRAFIASTLENGGYIVTSVASGEEAVHEVNAAPFDILVTDINLPGMSGLN 67 Query: 64 LARRATELDPDLKVMFITGFAA 85 L + + PDL+V+ +T A+ Sbjct: 68 LLKLLKDSFPDLEVVIVTSNAS 89 >gi|77359135|ref|YP_338710.1| two-compnent response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874046|emb|CAI85267.1| response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) [Pseudoalteromonas haloplanktis TAC125] Length = 461 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 4/111 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + + L +DD +R L KAL +AG+ V S S + ++ S+L++D+ MP MDG+ Sbjct: 2 KTVWLVDDDASIRFVLEKALTRAGFTVQSFAEAQSVLNALKFSQPSVLISDVRMPGMDGM 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLV 111 L E P L V+ IT A L+ NA + + L+KPF L + + Sbjct: 62 ALLELIAEQVPGLPVIIIT--AHSDLDSAVNAFQKGAFEYLAKPFDLNEAI 110 >gi|22298565|ref|NP_681812.1| two-component hybrid sensor & regulator [Thermosynechococcus elongatus BP-1] gi|22294745|dbj|BAC08574.1| two-component hybrid sensor & regulator [Thermosynechococcus elongatus BP-1] Length = 871 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 ++L+ +D +RR L + L +AGY VV C +G A D + + SL++TDI MP +DG Sbjct: 741 QVLIVDDSITVRRLLDRVLRQAGYNVVQCRDGKEALDFLLAAGDQVSLVITDIEMPRLDG 800 Query: 62 IEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L A R + L V +T + ++KPF + ++ V +LLT Sbjct: 801 YDLLEAIRLSARLRHLPVAMLTSRGGDTHRQKALQLGANGYITKPFQPQGILQTVTQLLT 860 >gi|332702845|ref|ZP_08422933.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552994|gb|EGJ50038.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 562 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ + L + L G+ V G A D++ E PF ++L D MPEMDG+E Sbjct: 442 ILLAEDNPINQFVLTEMLKVRGHAVTVAATGREALDRLAERPFEVVLMDAQMPEMDGVEA 501 Query: 65 ARRATELD-PDLKV-MFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 RR E P + I A AL+ D NA + + KP + DL ++N Sbjct: 502 TRRIREGQVPGAPANIPIIALTAYALSGDRERFLNAGMDDYIPKPVDMDDLDAKLN 557 >gi|322412289|gb|EFY03197.1| two-component response regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 246 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQKSPQTHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKSDVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|319898558|ref|YP_004158651.1| two-component system regulatory protein [Bartonella clarridgeiae 73] gi|319402522|emb|CBI76065.1| two-component system regulatory protein [Bartonella clarridgeiae 73] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ L KA+ AGY S NG Y EP+ ++ DI + MDGI+ Sbjct: 2 RILIVEDDRDLNHQLAKAVKDAGYVSDSAFNGEDGYFLGSTEPYDAVILDIGLSRMDGIQ 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + ++ +T ++ D+ A + KPFHL +++ + L+ Sbjct: 62 VVERWRKEGYSMPILMLTARDRWSDKVRGIDAGAD---DYVVKPFHLEEVMARLRALI 116 >gi|315920002|ref|ZP_07916242.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693877|gb|EFS30712.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1433 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD+D+R FL + +G +EVV+ +G S +++ + L++ D++MP M G Sbjct: 1157 RKVLIIEDDNDVREFLKEEIGHY-FEVVAEADGISGFERAQTYDADLIICDVLMPGMTGF 1215 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVNRL 117 E+ ++ L + I ALN + + + ++KPF + L+ +++L Sbjct: 1216 EVTKK---LKNEFATSHIPIILLTALNMEEKYLEGIESGADAYITKPFSISLLLARISKL 1272 Query: 118 L 118 + Sbjct: 1273 I 1273 >gi|312890869|ref|ZP_07750398.1| transcriptional regulator, Crp/Fnr family [Mucilaginibacter paludis DSM 18603] gi|311296652|gb|EFQ73792.1| transcriptional regulator, Crp/Fnr family [Mucilaginibacter paludis DSM 18603] Length = 350 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+K+L+ ED++D+R +++ L A YEV NNG D + ++L DI+MPE+D Sbjct: 1 MNKKVLIIEDNNDIRENVVEILELANYEVYEANNGKKGVDLAVKNLPDIILCDIMMPELD 60 Query: 61 G 61 G Sbjct: 61 G 61 >gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 246 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G++V + +G +A R+ ++ D+++P++DG + Sbjct: 21 RVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPDLDGFQ 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E P + V+F+T AV ++KPF L +++ + LL Sbjct: 81 VLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALL 135 >gi|255009666|ref|ZP_05281792.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 229 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + L + L ++GY+V +G R F ++++D+++P+M G E Sbjct: 3 KILVVEDEQRVAELLKRGLEESGYQVELAYDGVWGLRLFRAGEFQMVISDVILPKMSGFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + ++ + V+ +T D + KPF R+L + LL Sbjct: 63 LCKEIRNINNRVPVLMLTALGTTDDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 >gi|237802025|ref|ZP_04590486.1| chemotaxis protein CheY [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024881|gb|EGI04937.1| chemotaxis protein CheY [Pseudomonas syringae pv. oryzae str. 1_6] Length = 122 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + AL AGY+V+ ++G A K+ + L+++D+ MP MD Sbjct: 1 MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEASDGKDALGKLTGQKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + +L ++ +T + + + A + KPF ++ V++L+ Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 >gi|219854598|ref|YP_002471720.1| hypothetical protein CKR_1255 [Clostridium kluyveri NBRC 12016] gi|219568322|dbj|BAH06306.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 15/123 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++I L ED+ ++ L K L GY+V + +G+ A ++++ P L + DI++P++DG Sbjct: 6 KRIYLVEDERNLNVLLEKYLRNEGYDVTTFFDGSCAKKRIKDMP-DLWILDIMLPDIDGY 64 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL + + + + V+F++ + L D LSKPF R+LV N Sbjct: 65 ELIKYIKQNNKNTPVIFMSARNEELDRVVGLELGSDD-------YLSKPFLPRELVIRTN 117 Query: 116 RLL 118 +L+ Sbjct: 118 KLM 120 >gi|254442741|ref|ZP_05056217.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257049|gb|EDY81357.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1289 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ ++ + L + G + NG A D L+L D+ +PE+DG E+ Sbjct: 1171 ILVVEDEAPNYEYIERVLQRTGARIHWAENGREALDIFASRSIHLILLDLKIPEIDGFEV 1230 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR ++ + ++ + +A + S+ + L+KPF L+N ++R L Sbjct: 1231 ARRIRAINQSVPIIAQSAYAMREDHLRSSEAGANEHLAKPFSPDVLINTLSRYL 1284 >gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED D+ L + L + G+EV S G + ++++ + L+L DI++P G E Sbjct: 3 KILIIEDSKDVNSMLTEVLTEEGFEVFSTYTGTDGFKEIKKNTYDLILLDIMLPFKSGDE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + + D+ V+ I+ V D ++KPF L ++V V+ Sbjct: 63 ILKEVRQF-SDIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVS 113 >gi|104780455|ref|YP_606953.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95109442|emb|CAK14143.1| putative sensor histidine kinase/response regulator hybrid [Pseudomonas entomophila L48] Length = 761 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++L+ +D +R K L GYEV +G ++ +R + F LL+TDI MP MD Sbjct: 636 VRKRVLVVDDSLTVRELQRKLLSNRGYEVAVAVDGMDGWNALRSDDFDLLITDIDMPRMD 695 Query: 61 GIE---LARRATELDPDLKVMFIT 81 GIE L RR L L VM ++ Sbjct: 696 GIELVTLVRRDHRLQ-SLPVMVVS 718 >gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter winogradskyi Nb-255] gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 223 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G A+ EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVLDIGLPKMDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR P L + ++ D+ A ++KPFHL +++ + LL Sbjct: 62 VLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHLEEILARMRALL 116 >gi|39997670|ref|NP_953621.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984562|gb|AAR35948.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298506611|gb|ADI85334.1| sensor histidine kinase response regulator, Hpt domain-containing [Geobacter sulfurreducens KN400] Length = 850 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD ++ R L+ A LG+ G+ V NG + + F L+L D+ MP MDG E Sbjct: 602 ILVADDVEVNRMLVNAILGRMGHRVAQAANGEEVLKALEDSRFDLVLMDVQMPVMDGFET 661 Query: 65 ARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ARR E + ++ +T +A + ++KPF +LV V+ Sbjct: 662 ARRIREQERGSGRRTPILALTAYAGRQDREQCLSADMDGYVAKPFTAEELVRAVH 716 >gi|148265033|ref|YP_001231739.1| response regulator receiver protein [Geobacter uraniireducens Rf4] gi|146398533|gb|ABQ27166.1| response regulator receiver protein [Geobacter uraniireducens Rf4] Length = 121 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I+ A+D +R+ + L ++GYEV+ +G A K+ + +L+TD+ MP +D Sbjct: 1 MGKTIMTADDSASVRQMVSFTLKQSGYEVIEAVDGKDALQKLGGQKVDMLITDLNMPNLD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L + A + P K ++ +T + + A + KPF L++ V ++ Sbjct: 61 GIGLIKGARAI-PACKFIPIVMLTTESQDCKKQEGKAAGATGWIVKPFKPEQLLSVVKKV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ D+ + L + + Y V + G + ++ R F ++ D+++P MDG E Sbjct: 2 KLLVIEDNHDLVQVLQEGFEEHDYAVEAAYEGETGLNRARSGEFDCIVLDVMLPGMDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R E D V+ +T AV + L KPF ++L+ VN L+ Sbjct: 62 LIDRFREEGHDTPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALI 116 >gi|302342511|ref|YP_003807040.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301639124|gb|ADK84446.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 224 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 45/82 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D R L LG+ G++ + G + + + F L+L D+V+P++DGI++ Sbjct: 11 VLIVDDSKTAREHLHSVLGQLGHDAAAVCCGQDSLNAIERTAFDLILVDLVLPDIDGIDV 70 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + + PD ++ +T F ++ Sbjct: 71 LKAMRAICPDTPIIIVTAFGSM 92 >gi|301046673|ref|ZP_07193801.1| nitrogen regulation protein NR [Escherichia coli MS 185-1] gi|300301374|gb|EFJ57759.1| nitrogen regulation protein NR [Escherichia coli MS 185-1] Length = 469 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 54/111 (48%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L ++ Sbjct: 10 DDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 70 KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|322421319|ref|YP_004200542.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127706|gb|ADW15266.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1004 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL +D++ +R + L GY V++ +GA+A D RE E ++ D+ MP +DG Sbjct: 882 VLLVDDEEAIRNLGREMLETLGYTVLTAEDGAAALDVFRERGEEIDCVILDLTMPNLDGE 941 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + +DP ++V+ +G++ + A + KP+ L +L ++ R+ Sbjct: 942 QAFLSLRSMDPGVQVILSSGYSEQEITQRFVGRGLAGFIQKPYRLAELSLKLQRI 996 >gi|254168795|ref|ZP_04875636.1| hypothetical protein ABOONEI_2394 [Aciduliprofundum boonei T469] gi|197622232|gb|EDY34806.1| hypothetical protein ABOONEI_2394 [Aciduliprofundum boonei T469] Length = 119 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 45/80 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLA+D + +FL L K E++ N A +K +EE ++L DI++ + +GI+ Sbjct: 3 KLLLADDSELFYKFLRDVLKKESIEIIWAKNKKEAIEKFKEEKPDIVLVDIILSDSNGID 62 Query: 64 LARRATELDPDLKVMFITGF 83 + + LD D +M I+G Sbjct: 63 VIKELKALDKDANIMVISGL 82 >gi|209551540|ref|YP_002283457.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537296|gb|ACI57231.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D ++KPF R LV V + Sbjct: 64 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVRAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|167950819|ref|ZP_02537893.1| nitrogen regulation protein NR(I) [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 337 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 57/113 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++ + +DD +R L K L KA EVV + D + + ++++DI MP MDG+E Sbjct: 6 RVWVIDDDRSIRWVLEKTLQKAQMEVVCFESANGVLDSLERQQPDVIVSDIRMPGMDGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R P+L V+ +T + + + + L KPF + + V+++ R Sbjct: 66 LLERINLRFPELPVIIMTAHSDLESAVSAFHGGAFEYLPKPFDVDEAVDQIRR 118 >gi|186472969|ref|YP_001860311.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195301|gb|ACC73265.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 760 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 15/116 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-----VREE------PFSLLLT 52 +ILL ED+D++ L G+EV N +A ++ R++ PF L+++ Sbjct: 625 RILLVEDNDEVAAGTEALLQMMGHEVTCAFNADAAMERFEAAHARQKDTGEPLPFDLVIS 684 Query: 53 DIVMP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 DI MP +++GI+LA R + L V+ +TG+A + +A+VLSKPF + Sbjct: 685 DIHMPGKLNGIDLAERVQAFETKLPVILVTGYAE---ELERARHVDARVLSKPFDI 737 >gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +LLAEDD +R L +AL GY V + +G A + P +LL D++MP +D Sbjct: 11 VTQTVLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMPGID 70 Query: 61 GIELAR 66 G+++ R Sbjct: 71 GLQVCR 76 >gi|86606933|ref|YP_475696.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555475|gb|ABD00433.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 247 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 5/83 (6%) Query: 6 LLAEDDDDMRR----FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 LLAEDD R+ L++ L + G V +NG A + R+ + LL DI MPEM G Sbjct: 4 LLAEDDTLYRQHVHSLLMQHLPQFG-PVYMASNGREALELYRQHRPNFLLLDIRMPEMSG 62 Query: 62 IELARRATELDPDLKVMFITGFA 84 IE+AR+ P +++F + FA Sbjct: 63 IEVARQVWSEQPSTRIIFWSHFA 85 >gi|71908536|ref|YP_286123.1| two component, sigma54 specific, Fis family transcriptional regulator [Dechloromonas aromatica RCB] gi|71848157|gb|AAZ47653.1| two component, sigma54 specific, transcriptional regulator, Fis family [Dechloromonas aromatica RCB] Length = 450 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ R+ L+ L + G+ V + +G A + ++ + L+LTDI MP MDG+ L Sbjct: 6 ILVVDDEEIARQNLVHVLKREGWHVDAAADGEQATACLGKQTYQLVLTDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL---RDLVNEVNRLLTIK 121 R+ D +V+ IT A+ ++ + KPF + R +V+E + +K Sbjct: 66 LRQIKAQAADTEVIVITAHASAGSAVEAMRAGAFFYVEKPFRIAEVRKIVHEALEKVRLK 125 Query: 122 N 122 + Sbjct: 126 S 126 >gi|325263585|ref|ZP_08130319.1| putative response regulator receiver domain protein [Clostridium sp. D5] gi|324031294|gb|EGB92575.1| putative response regulator receiver domain protein [Clostridium sp. D5] Length = 523 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++L+ +D++ R LI +L + ++ ++G +A + R + ++L D+ MP MD Sbjct: 2 RLLIVDDEELTREGLIASLDWSSLGIEQIFQADDGVNALNIARSQKPDIILCDVRMPRMD 61 Query: 61 GIELARRATELDPDLKVMFITGFA 84 GI++ R E PD V+F++G++ Sbjct: 62 GIQMVERLEEFLPDTSVIFMSGYS 85 >gi|319404967|emb|CBI78569.1| transcriptional regulator BatR [Bartonella sp. AR 15-3] Length = 240 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q I+L +DD ++ L AL GY V S +G++A + P L + DI MP MD Sbjct: 7 VTQTIVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHPPHLAIFDIKMPRMD 66 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+EL RR + D+ V+F+T + + D ++KPF R L+ Sbjct: 67 GMELLRRLRQ-KSDIPVIFLTSKDDEIDELFGLKMGADD-------FITKPFSQRLLIER 118 Query: 114 VNRLL 118 V +L Sbjct: 119 VKAVL 123 >gi|283852327|ref|ZP_06369598.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] gi|283572284|gb|EFC20273.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] Length = 142 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 61/115 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D+ + + L A KAGY+V + A+A P +++TD+ M MDGI Sbjct: 17 RRLLILDDEPIVVKRLKPAFQKAGYDVSVFTDSAAALAAFEAAPADIVITDLKMEGMDGI 76 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R + P + V+ ITGFA + +S ++KPF L D+++ V RL Sbjct: 77 GFLDRIKAVSPGVGVIVITGFATLETAKESFHKGAFDFVAKPFKLADILDVVARL 131 >gi|218674017|ref|ZP_03523686.1| chemotaxis two-component response regulator protein [Rhizobium etli GR56] Length = 122 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R L AGY V +GA + F L++TD+ MP MD Sbjct: 1 MSANILTVDDSASIRLTTKVTLSNAGYNVTEAADGAEGLATAKSRSFDLIVTDLNMPVMD 60 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + +L + ++F+T + L + A L+KPF +LV V ++L Sbjct: 61 GLTMIEELRKLPGQAGVPIIFLTTESDADLKARAKAAGATGWLTKPFDPENLVKIVKKVL 120 >gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] Length = 1235 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 K L+ +D+ + + +EV + NG+ A K+ + LLL D +MPEMDGI Sbjct: 968 KALVVDDNPTALQIYSTVMRDFHFEVDTAANGSEALYKLEKSSVDLLLLDWMMPEMDGIQ 1027 Query: 63 ---ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 EL R + LD V+ +T +AA L D + +L KPF L NE+ Sbjct: 1028 VIDELDRMVADGRLDKRPIVIMMTAYAAEPLKEDVDRSNIYAMLQKPFKASALFNEI 1084 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 4/114 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + L AGYEV +NG A D + E+ F +L DI MP MDG+ Sbjct: 1113 VLLVEDNVINQQVATELLKSAGYEVDVADNGQIAIDMLAEKDFDAVLMDIQMPVMDGLT- 1171 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 A R L + I A A++ D +A + ++KP L +L + ++ Sbjct: 1172 ATREIRKHFSLHELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLSELFDTLS 1225 >gi|160943342|ref|ZP_02090577.1| hypothetical protein FAEPRAM212_00828 [Faecalibacterium prausnitzii M21/2] gi|158445368|gb|EDP22371.1| hypothetical protein FAEPRAM212_00828 [Faecalibacterium prausnitzii M21/2] Length = 263 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMP 57 M K+L+AED+ R+ L + L K +++S NG A + E + + DI MP Sbjct: 1 MKCKLLVAEDELIERKVLCRTLQKYLGDLISLYEAKNGREALEIFAREAPQVAVLDIEMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + G+E+AR+ E D + ++F+TGF + + + L KP++ ++LV V Sbjct: 61 GLTGLEVARKIRETDKNCAILFLTGFDKFDYARQAISVRALDYLLKPYNEQELVFAVE 118 >gi|94272958|ref|ZP_01292211.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93449961|gb|EAT01377.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 231 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 19/130 (14%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ +IL+ +DD M R + + G+ V S +G SA + F L++ D+ +P+ Sbjct: 1 MNRTRILVVDDDPSMLRLCQVVIQRQGWLVESAQDGGSAEGLLATRSFDLVVLDLNLPDG 60 Query: 60 DGIELARRATELDPDLKVMF--------ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 DG+++ RR + +M + GF A A L+KPFH +L+ Sbjct: 61 DGLDIGRRLYQQGVPFLLMTARDRPNERVAGFEVGA----------ADYLTKPFHPNELI 110 Query: 112 NEVNRLLTIK 121 + + R+L ++ Sbjct: 111 HRIRRVLGLR 120 >gi|3128278|gb|AAC16130.1| potential phosphate regulatory protein [Rhodobacter capsulatus SB 1003] Length = 149 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+D++ L LG+ G + G A +++R E L+L D+++PE+ G E Sbjct: 28 RVLIVEDEDNIAIALDYLLGREGLDHARLATGLGAVERIRAERPDLVLLDVMLPEVSGYE 87 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + RA ++++ +T + + A ++KPF L++L +E++RLL Sbjct: 88 ICQQVRADGALAGVRIVMMTARGSALERRKALALGADGFIAKPFELKELRDELHRLL 144 >gi|86139956|ref|ZP_01058521.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85823374|gb|EAQ43584.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 133 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 17/127 (13%) Query: 2 NQKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ +L DDD++ R +++ L + Y V+ +G A D V++E F ++L D+ MP MD Sbjct: 6 DRRNILVVDDDEINRMVVRVLMERRNYRVLEAASGPEALDLVKDETFDVVLMDLSMPGMD 65 Query: 61 GIELAR--RATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E R R+ + L V+ +T + + L NA VL KPF + Sbjct: 66 GLETTRCIRSHDASSQLPVVALTAHTSHTEQKMCLEAGMNA-----VLRKPFD----SEQ 116 Query: 114 VNRLLTI 120 V+RLL + Sbjct: 117 VDRLLGL 123 >gi|332284445|ref|YP_004416356.1| nitrogen regulation protein [Pusillimonas sp. T7-7] gi|330428398|gb|AEC19732.1| nitrogen regulation protein [Pusillimonas sp. T7-7] Length = 502 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + + + +DD +R L KAL + S ++ A + E S+L+TD+ MP DG+ Sbjct: 2 KAVWIVDDDQSIRWVLEKALARVAIPARSFDSAAQVLAALETETPSVLVTDVRMPGEDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R ++ PDL V+ +T F + + L KPF + + + R Sbjct: 62 SLLHRIKQVRPDLPVIVMTAFTDLNSTVQAFQKGAFDYLPKPFDVNAAIGLIQR 115 >gi|323351626|ref|ZP_08087280.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122112|gb|EFX93838.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] Length = 244 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 I++ ED+ +R+ + + + G +V++ NG A+ K ++ P +LLTDI MP+M+G Sbjct: 4 IMIVEDEYLVRQGIASLVNYEQFGMQVIAQAENGREAWQKFQKNPADILLTDINMPQMNG 63 Query: 62 IELARRATELDPDLKVMFITGF 83 +ELA+ + P ++F+TG+ Sbjct: 64 LELAKLVRDQVPTCHIVFLTGY 85 >gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 225 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 48/81 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L + L G+ V + +G + VR+ P L++ D+++P +D Sbjct: 1 MSPRILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFIT 81 G+E+ R +D +L V+ +T Sbjct: 61 GLEVLSRLRRVDANLPVVMLT 81 >gi|225871871|ref|YP_002753325.1| sigma-54 dependent DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225793027|gb|ACO33117.1| sigma-54 dependent DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 478 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 52/103 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ +R L L GYEV + +G + +K+ + L+L D+ +P +GI Sbjct: 21 QKILIIDDEAALRETLEALLSLEGYEVETAIHGEAGLEKIDRNSYDLVLLDLALPGKNGI 80 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E+ + + DL V+ IT F V D+ + KP+ Sbjct: 81 EILGLIRDRNADLPVIMITAFGTVDNVMDAMRAGAQNFIQKPW 123 >gi|307151007|ref|YP_003886391.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981235|gb|ADN13116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1016 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPE 58 N+ IL+ +D+ +R +L + Y + +G A Y K + L+L D++MPE Sbjct: 896 NELILIVDDEASIREITKTSLEEHNYRTLVAKDGVEALVLYAKYSND-IELVLMDLMMPE 954 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG+ R +++ +K++ +G + ++ LSKP+ ++L+ +N++L Sbjct: 955 MDGVTAIRALKKINSQIKIVVTSGIVSNTKLDEAEPVNVTSFLSKPYTEKELLETLNQIL 1014 Query: 119 T 119 + Sbjct: 1015 S 1015 >gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] Length = 213 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALYFVQKEKPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +KV+ ++ F+ Sbjct: 61 MDGIEATKRLKQYDETIKVLILSSFS 86 >gi|218780083|ref|YP_002431401.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218761467|gb|ACL03933.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 302 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 9/120 (7%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN+ K+LL +D+D R + L K G+E ++ G A ++E+P ++L DI MP Sbjct: 1 MNESIKVLLVDDEDQFRATTKRILDKRGFETLAAATGEQALTMIKEKPDVVIL-DIKMPG 59 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 + G E+ + ++ P+ V+ +TG A+ P + K+ LSKP + L + + Sbjct: 60 ISGHEVLKEIKKISPETPVIMLTGHGAL---PSAEKAKDQGAFDYLSKPCSMDLLASRIT 116 >gi|150009079|ref|YP_001303822.1| two-component response regulator [Parabacteroides distasonis ATCC 8503] gi|255015700|ref|ZP_05287826.1| two-component response regulator [Bacteroides sp. 2_1_7] gi|256841639|ref|ZP_05547145.1| two-component system response regulator [Parabacteroides sp. D13] gi|262383979|ref|ZP_06077115.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298377166|ref|ZP_06987120.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_19] gi|301310857|ref|ZP_07216786.1| DNA-binding response regulator RprY [Bacteroides sp. 20_3] gi|149937503|gb|ABR44200.1| two-component response regulator [Parabacteroides distasonis ATCC 8503] gi|256736533|gb|EEU49861.1| two-component system response regulator [Parabacteroides sp. D13] gi|262294877|gb|EEY82809.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298266150|gb|EFI07809.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_19] gi|300830920|gb|EFK61561.1| DNA-binding response regulator RprY [Bacteroides sp. 20_3] Length = 243 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI EDD+++ L + L GY ++G + Y + + L + D++MP+ DG Sbjct: 6 KIFFCEDDENLGMLLREYLQAKGYVTDLFSDGEAGYKGFTKGKYDLCVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ ++PD+ ++F+T + L+KPF + +L+ + +L Sbjct: 66 LAQEIRSINPDIPIIFLTAKTMKEDILEGFKIGADDYLTKPFSMEELLLRIEAIL 120 >gi|110596967|ref|ZP_01385257.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like:Hpt [Chlorobium ferrooxidans DSM 13031] gi|110341654|gb|EAT60114.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like:Hpt [Chlorobium ferrooxidans DSM 13031] Length = 854 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 37/65 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++ILL +D++ RR + L GY + NG A + +E F L+L D+ MP MDG Sbjct: 577 NERILLVDDNETSRRIMSALLENYGYHIEQAVNGREALSLLEKEDFDLILMDVDMPVMDG 636 Query: 62 IELAR 66 IE + Sbjct: 637 IEATK 641 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 12/113 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG- 61 ++IL+ +DD R + K L + ++ NG A V E+ + L+ D MP ++G Sbjct: 435 KRILVTDDDSSNRLIISKYLSELHCQIDQAENGLQAVAMVSEKRYDLIFIDFEMPFLNGD 494 Query: 62 --IELARRATELDPDLKVMF----ITGFAAVALNPDSN--APKNA--KVLSKP 104 ++L R A +DP L + + I G ++ P++ A KN +VL+KP Sbjct: 495 RAVKLIRSAQNIDPSLALHYRDVPIIGITSLP-KPEATERAEKNGMNEVLAKP 546 >gi|83311264|ref|YP_421528.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946105|dbj|BAE50969.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 860 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ +L+ +D+ + + L + GY C + A A ++++ LL TD+VMP + Sbjct: 738 SEHVLVVDDEPHLAEIAGEFLAELGYRATICADAAEALSILQQDGGVDLLFTDVVMPHGL 797 Query: 60 DGIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG L R+A E+ V+ +GF VA N + +++LSKP+ L + V R L Sbjct: 798 DGYALERKAHEMGHACAVLLTSGFTGHVAANGEE---PQSEILSKPYGKASLAHAVRRAL 854 >gi|323488190|ref|ZP_08093441.1| cheY-like receiver domain-containing protein [Planococcus donghaensis MPA1U2] gi|323398194|gb|EGA90989.1| cheY-like receiver domain-containing protein [Planococcus donghaensis MPA1U2] Length = 118 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+A DD+D+ R LI + +E+ +G A +K+RE + L++ D +MP + G+ Sbjct: 2 KKILIA-DDEDILRILIADTLEDDFEIEEAEDGKEALEKIRENEYDLIVLDYMMPHLTGL 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + KV+ +T A A + + +SKPF +L++ V +L Sbjct: 61 EVLEEVRKDQNHTKVLMLTAKAQDADREKAISTGADFFMSKPFSPMELLSLVENIL 116 >gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] Length = 223 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 17/128 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG- 61 Q+IL+ EDD D++ L L +AGYEV N+G A E + L++ DI++P++DG Sbjct: 2 QRILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDGY 61 Query: 62 --IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 EL R+ + D+ ++ +T AL+ + + K + ++KPF + L+ ++ Sbjct: 62 GVCELIRKQS----DVPIIMLT-----ALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKI 112 Query: 115 NRLLTIKN 122 +L N Sbjct: 113 AAVLRRSN 120 >gi|219853953|ref|YP_002471075.1| hypothetical protein CKR_0610 [Clostridium kluyveri NBRC 12016] gi|219567677|dbj|BAH05661.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 231 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++KI L ED+ ++ L K L GY+V + ++G+ A +++++ P L + DI++P+++ Sbjct: 4 LSKKIYLVEDELNLNILLEKYLKNEGYDVTTFSDGSCAKNRIKDMP-DLWILDIMLPDIN 62 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G L + E + + V+FI+ + L D LSKPF R+LV Sbjct: 63 GYALIKCIKENNENTPVIFISAKNEEFDRVVGLELGSDD-------YLSKPFLPRELVIR 115 Query: 114 VNRLL 118 N L+ Sbjct: 116 TNNLI 120 >gi|218129826|ref|ZP_03458630.1| hypothetical protein BACEGG_01407 [Bacteroides eggerthii DSM 20697] gi|217987936|gb|EEC54261.1| hypothetical protein BACEGG_01407 [Bacteroides eggerthii DSM 20697] Length = 1294 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ ED++++R L+ ++ + Y V + NGA Y+K ++L+D+VMPE+ G Sbjct: 1038 NSKILIVEDNEEVRNLLV-SIFEPIYIVDTAVNGAEGYEKTLNIKPDIVLSDVVMPEISG 1096 Query: 62 IELARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R+ T ++ + ++ +T A + ++KPF ++ L+ N L+ Sbjct: 1097 TELCRKIKTNIETSHIPIILLTSQTASEYIIEGLKIGADDYITKPFSIKHLIIRCNNLV 1155 >gi|217967137|ref|YP_002352643.1| response regulator receiver protein [Dictyoglomus turgidum DSM 6724] gi|217336236|gb|ACK42029.1| response regulator receiver protein [Dictyoglomus turgidum DSM 6724] Length = 121 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ ED++++R + + LG YE+ G A +K++E L++ DI++P++DG Sbjct: 2 KKILIVEDEENVRGLIKETLGFLNKYEIHEAGTGREALEKIKELNPDLVILDIMLPDIDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + + E DP L + + A + N D + ++KPF L DL+ V LL Sbjct: 62 YTICEQIKE-DPSLNSLVLI-LTARSSNLDKKVGFSMGADDYMTKPFGLADLITRVENLL 119 >gi|149916058|ref|ZP_01904581.1| sensor histidine kinase/response regulator [Roseobacter sp. AzwK-3b] gi|149810132|gb|EDM69980.1| sensor histidine kinase/response regulator [Roseobacter sp. AzwK-3b] Length = 130 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 17/127 (13%) Query: 2 NQKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++ +L DDD++ R +++ L + Y VV +G A D V++E F ++L D+ MP MD Sbjct: 3 DRRNILVVDDDEINRMVVRVLMERRNYRVVEAASGPEALDLVKDEAFDVVLMDLSMPGMD 62 Query: 61 GIELAR--RATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E R R+ L V+ +T + + L NA VL KPF + Sbjct: 63 GLETTRHIRSDAAGSQLPVVALTAHTSHKEQQMCLEAGMNA-----VLRKPFD----SEQ 113 Query: 114 VNRLLTI 120 V+RLL + Sbjct: 114 VDRLLGL 120 >gi|49475550|ref|YP_033591.1| response regulator [Bartonella henselae str. Houston-1] gi|49238356|emb|CAF27580.1| Response regulator [Bartonella henselae str. Houston-1] Length = 121 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++K+++ ED++ +M+ F L++A +GYE V NG A D R SL+L DI +P Sbjct: 1 MSKKVMIVEDNELNMKLFRDLVEA---SGYETVETRNGLMALDLARSSMPSLILVDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEV 114 E+ GI++ ++ + D +L+ + + A A+ D A + +SKP + + V Sbjct: 58 EVSGIDVIKQLKK-DEELRAIPVVAVTAFAMKGDEERIRASGCEEYMSKPISVPHFITMV 116 Query: 115 NRLL 118 L Sbjct: 117 KNFL 120 >gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740] gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes] Length = 538 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 14/114 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL EDD +R + L + EV S NG A RE+ ++++TDI MP MDG+ Sbjct: 8 RILYVEDDALIREATLPVLERFALEVFSAQNGEEALKFFREKRPNIIITDIRMPVMDGLA 67 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +AR P + ++F++ A+ L D+ L KPF L+ L Sbjct: 68 MARLIKTESPYVPIIFVSAHNDTDQLMEAIDLGADA-------FLVKPFSLQKL 114 >gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+ RF+ L GY +G + K RE +L++ D+++P MDG+E+ Sbjct: 6 VLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ARR + ++ ++ +T AV + L KPF + +L+ V Sbjct: 66 ARRIRK-TSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVR 115 >gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5] Length = 234 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ +M+ +I+ + K G+ + ++G A ++ P L++ DI+MP +DG + Sbjct: 16 ILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIMMPHLDGFSV 75 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A E+ L ++ +T ++ ++KPF R L+ + N LL Sbjct: 76 CKMAREM-SSLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALL 128 >gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MDG + Sbjct: 3 RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLETTRIELIITDIMMPKMDGYD 62 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + R+T D V+ IT A ++KP + +++ V LL Sbjct: 63 LLDSLRSTRFDT--PVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALL 117 >gi|256838748|ref|ZP_05544258.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] gi|256739667|gb|EEU52991.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] Length = 905 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDDD++R FL + L ++ + NG A + EE SL+++D++MPEM+G EL Sbjct: 658 ILITEDDDEVRCFLERELSPH-FKTRTAANGKDALRVLEEEEISLVVSDVMMPEMNGFEL 716 Query: 65 AR 66 R Sbjct: 717 CR 718 >gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1162 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 2 NQKILLAEDDDDMRR-FLIKA-LGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE 58 QKILLA DDDMR F + A LG+ G +V++ +G A +++ E L+L DI+MPE Sbjct: 1042 GQKILLA--DDDMRNVFSLSALLGEQGIDVITAADGKEALERLEEHNDIRLVLMDIMMPE 1099 Query: 59 MDGIELARR 67 MDG E RR Sbjct: 1100 MDGYEAMRR 1108 >gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+LL EDD+ +R F+ K +EV +G A + L++ DI+MPEMD Sbjct: 1 MKRKVLLVEDDELIREFVSDYFKKEAWEVYEAQHGKMAMELFALHSVDLVVLDIMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G + R+ + D+ ++ IT Sbjct: 61 GWSVCRKIRQ-QSDIPIIIITA 81 >gi|167745964|ref|ZP_02418091.1| hypothetical protein ANACAC_00659 [Anaerostipes caccae DSM 14662] gi|167654479|gb|EDR98608.1| hypothetical protein ANACAC_00659 [Anaerostipes caccae DSM 14662] Length = 560 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 23/116 (19%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 QKIL+ DD +M R L++ + K YE++ +NG +A + R FSLLL DI+MP+M+ Sbjct: 4 QKILIV-DDSEMNRALLRDILKDQYEIIEADNGLAAVKILSRRRSDFSLLLLDIMMPKMN 62 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAK---------VLSKPF 105 G E+ + + L V+ I+ N+P+N K +S+PF Sbjct: 63 GFEVLSFINKQQWNETLAVIMISA---------DNSPENIKHAYNLGAFDYISRPF 109 >gi|160897023|ref|YP_001562605.1| CheA signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160362607|gb|ABX34220.1| CheA signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 2137 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +RR + L + GY V +G A +++ EE +L+L+DI MP MDG +L Sbjct: 1989 VLVVDDSITVRRVTQRLLQREGYRVALAADGLQAMERLAEERPTLVLSDIEMPRMDGFDL 2048 Query: 65 AR--RATELDPDLKVMFIT 81 R RA E DL V+ IT Sbjct: 2049 LRNIRADEALRDLPVVMIT 2067 >gi|118579571|ref|YP_900821.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502281|gb|ABK98763.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 645 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + +LLAED+ +R L + GY V+ +G A D+ +E E L++ D++MP+ + Sbjct: 526 ETLLLAEDEPLVRVITKTILEEFGYTVIEAEDGVDAVDRFQEHRERIQLIILDVIMPKKN 585 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + + P++K +F++G+A L+ + + KP L+++V +L Sbjct: 586 GRQAYDAIRLIRPEVKALFMSGYADDILSSKGIRDEELHFVPKPLDQSILLHKVREIL 643 >gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 234 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 20/128 (15%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV------REEPFSLLLTDIVMP 57 ++L+ +DDD +R L +ALG+ G+EV +G A ++ F L+L D+++P Sbjct: 3 RLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLMLP 62 Query: 58 EMDGIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + G+++ R DP ++ ++ + L D L KPF LR+L Sbjct: 63 GVGGLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADD-------YLVKPFGLREL 115 Query: 111 VNEVNRLL 118 V LL Sbjct: 116 VARCRALL 123 >gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3] gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+M+G + Sbjct: 2 KILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDMNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + L KPF +L+ V LL Sbjct: 62 IIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLL 116 >gi|332701531|ref|ZP_08421619.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 840 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILLAEDD + + L + G++V + NG A + ++ E F L+L D MPEMDG Sbjct: 710 RKILLAEDDQINQILAMSLLERRGHKVTAVENGREAIEALQRECFDLVLMDARMPEMDGE 769 Query: 63 ELARRATELDPDL--KVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDL 110 E R E P K + I A AL D A ++KP L +L Sbjct: 770 EATRIIRESTPPGVDKNIPIIALTAYALKGDRERFLAAGMDDYIAKPLDLEEL 822 >gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253] Length = 949 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVISKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|294664671|ref|ZP_06730005.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605555|gb|EFF48872.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 690 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 Q++L+ EDD+ +R + + L + GY+ + +A + P LL+TD+ +P ++ Sbjct: 570 QQVLVVEDDEQVRLLVTELLSELGYQADVVADADAAL-PILASPRRIDLLVTDVGLPGLN 628 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 629 GRQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVL 686 >gi|260769733|ref|ZP_05878666.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972] gi|260615071|gb|EEX40257.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972] gi|315182272|gb|ADT89185.1| chemotaxis protein CheY [Vibrio furnissii NCTC 11218] Length = 119 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D +R+ + L AGY+V + N+G A K + F ++++D+ MP M G E Sbjct: 3 KILAVDDSISIRQMVSHTLKDAGYDVETANDGREALTKAQSTKFDVVISDVNMPNMGGFE 62 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A +P K ++ +T ++ + L KPF+ L+ + R+L Sbjct: 63 LV-KAIRGNPQYKFIPILMLTTETSMEKKQEGKLAGATGWLVKPFNPDTLLKTLKRVL 119 >gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++ + F+I L GYEV+ +G A + +L+L D ++P DG+ Sbjct: 5 KILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWMLPGYDGLT 64 Query: 64 LARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + D+ V+ IT + A L D ++KPF + +L+ + +L Sbjct: 65 VLRRIRQ-TSDVPVIMITARSQTADIRLALDQGLD---DYITKPFEIEELLARIRVIL 118 >gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ATCC 35469] gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ATCC 35469] Length = 949 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVISKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|206890498|ref|YP_002249728.1| sensory box histidine kinase/response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742436|gb|ACI21493.1| sensory box histidine kinase/response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 633 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEM 59 + IL+ +DD+ R F+ L GY V NG A + K+ E +L L D+VMP + Sbjct: 520 ETILVVDDDEQTRDFISSFLKDYGYNVYEAKNGKEALEIFKKLNHE-IALSLIDLVMPGI 578 Query: 60 DGIELARRATELDPDLKVMFITG 82 GIE+ R+ ++P+ K++ ++G Sbjct: 579 SGIEVMRQIKTINPEAKIVIMSG 601 >gi|190889676|ref|YP_001976218.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190694955|gb|ACE89040.1| two-component response regulator protein [Rhizobium etli CIAT 652] Length = 251 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+EL Sbjct: 10 IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGMEL 69 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D ++KPF R LV V + Sbjct: 70 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVRAV 121 Query: 118 L 118 L Sbjct: 122 L 122 >gi|189463997|ref|ZP_03012782.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM 17393] gi|189438570|gb|EDV07555.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM 17393] Length = 1329 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+DD+R ++ + Y +++ NG ++ + ++++DI+MP MDGIEL Sbjct: 1076 ILIVEDNDDIREYIATSFSN-NYHIMTATNGKEGIEQALKYIPDIIISDIMMPVMDGIEL 1134 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E + V+ +T ++ + L+KPF + L + V+ LL Sbjct: 1135 CKLIKEDVRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLHSRVHNLL 1190 >gi|223937368|ref|ZP_03629273.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223893919|gb|EEF60375.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 846 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDIVMPE 58 +IL +D+ +R + + L G+ V + G + D R PF +++TD+ MP Sbjct: 722 QILCIDDEPLLRELVKEILESDGHRVQVADGGQTGLDAFQKAVERGRPFDIVITDLGMPY 781 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRL 117 +DG E+A+R P ++ +TG+ A + D + P + +LSKP +L + RL Sbjct: 782 LDGREVAKRLKAESPATPIILLTGWGAF-MKSDGDVPAHIDGILSKPPRSSELRETLARL 840 >gi|163796032|ref|ZP_02189995.1| protein containing response regulator domain, but no DNA binding domain [alpha proteobacterium BAL199] gi|159178787|gb|EDP63325.1| protein containing response regulator domain, but no DNA binding domain [alpha proteobacterium BAL199] Length = 124 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ ++L+AED+ ++ L LG+ GYEV + ++G + +++R + +L+ D+++P+ Sbjct: 3 VSARVLIAEDEPNLIESLSFILGREGYEVSAVSDGDAVLERLRSDRPHVLILDVMLPKRT 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G E+ + +LDP L + + A D ++ ++KPF +D+V+ + RL Sbjct: 63 GFEVL-KLIKLDPTLSGIPVMVLTAKGQERDRKTAEDLGADAFVTKPFSNQDVVDRIKRL 121 >gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 1564 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED ++ + L + GY NNG + + + + ++L D+ MPEMDG+ Sbjct: 1437 QILLAEDIVVNQKVALLILKQLGYRADVANNGEEVLEALHRQSYDVVLMDVQMPEMDGLT 1496 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 AR TE + + +I A A+ D A + +SKP + +L + R Sbjct: 1497 AARHITEQWQEEEQPYIIALTANAMQGDREMCMAAGMHDYVSKPIRVDELKSAFER 1552 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 +++L+ +D+ RR L G + + + GA A + + F L + D+ MPEMDG Sbjct: 1293 KQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDSKFDLAILDMQMPEMDG 1352 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 +ELAR +LD L ++ ++ + + + +L+KP +L D + E+ Sbjct: 1353 VELARHIRQLDQRKHLPLVMLSSLGQDEIIKHKQEIQFSAILNKPIQQSYLYDALAEI 1410 >gi|154482428|ref|ZP_02024876.1| hypothetical protein EUBVEN_00095 [Eubacterium ventriosum ATCC 27560] gi|149736705|gb|EDM52591.1| hypothetical protein EUBVEN_00095 [Eubacterium ventriosum ATCC 27560] Length = 230 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A D +R+ F L+L DI +P+ +G Sbjct: 29 EQILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINLPDGNGF 88 Query: 63 ELARRATELDPDLKVMFITG 82 EL + D V+F+T Sbjct: 89 ELCKLIKPQHSDTIVIFLTA 108 >gi|146342592|ref|YP_001207640.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146195398|emb|CAL79423.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 490 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-M 59 ++ IL+ EDD +R +++ + + GY +S +N A + E LL TD+++P Sbjct: 370 DETILIVEDDALVRDYVVAQVRRLGYRTLSASNAAEGLAIIDSPERIDLLFTDVIIPGGK 429 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA A + P LKV++ +G+ A+ + +L+KP+ DL + L Sbjct: 430 NGRQLAIEAEKRRPGLKVLYTSGYTENAIVHHGRLDADVLLLAKPYLSADLARMIRTAL 488 >gi|114777281|ref|ZP_01452292.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] gi|114552426|gb|EAU54909.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] Length = 697 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDG 61 ++LL +D+ + + + L K G +VV+ +G A + +P S +L D+ MP MDG Sbjct: 582 RVLLVDDEPGVIQVGTRMLEKLGLQVVAACSGQEALNTFSRDPLSFDWVLLDVTMPGMDG 641 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E ++ + P++ V+ +G+ A ++ P + L KP+ + L R+++ Sbjct: 642 AECLQQLRRIRPEIHVVMTSGYDADSVLEQECEPDD--FLPKPYTIEKLRQIAKRIMS 697 >gi|104781400|ref|YP_607898.1| response regulator [Pseudomonas entomophila L48] gi|95110387|emb|CAK15095.1| putative response regulator [Pseudomonas entomophila L48] Length = 119 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L AL G+ V +NG A D ++E+ L++TD +MP +G+EL Sbjct: 4 ILIVDDEYLIADILGFALEDEGFLVEKASNGHKALDALKEKRVDLVITDYMMPVQNGLEL 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNRLL 118 AR R PDL V+ ++G A + + P+ A V KPF + ++ +V LL Sbjct: 64 ARAIREDPQLPDLPVILMSGAQA---SQGRDCPELFAAVFDKPFDMDRMIAKVRELL 117 >gi|34557247|ref|NP_907062.1| two-component hybrid sensor and regulator [Wolinella succinogenes DSM 1740] gi|34482963|emb|CAE09962.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes] Length = 372 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +LA DD ++ ++ + K Y+V+ +G A + V+ E L+L DI+MPEMDG Sbjct: 4 HEATILAVDDTEVNVDILMGILK-NYDVIPALSGKEALEIVKNEKIDLILLDIMMPEMDG 62 Query: 62 IELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ RR + E + ++FIT + + ++KPF+ +L++ V+ L Sbjct: 63 YEVCRRLKSEEATRSIPIIFITAKTTESDIKEGFERGAVDYVTKPFNPIELISRVDTHLE 122 Query: 120 IKN 122 +++ Sbjct: 123 LRS 125 >gi|13475584|ref|NP_107148.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14026336|dbj|BAB52934.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 131 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +IL +D+DD+R +L +EV SC++GA+A L+L D++MP+M Sbjct: 4 MPARILYVDDEDDIREIAQMSLELDPEFEVRSCSSGAAALTDAAAWHPDLILLDVMMPDM 63 Query: 60 DGIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG E +R A+ L + V FIT A V++KPF L EV +L Sbjct: 64 DGPETLKRLAASPLTASIPVAFITARTQTHQVERYLAMGAVGVIAKPFDPLALAGEVRKL 123 Query: 118 LT 119 L+ Sbjct: 124 LS 125 >gi|116181786|ref|XP_001220742.1| hypothetical protein CHGG_01521 [Chaetomium globosum CBS 148.51] gi|88185818|gb|EAQ93286.1| hypothetical protein CHGG_01521 [Chaetomium globosum CBS 148.51] Length = 1270 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ +R +K L K + V NG A D VR + F ++L D+ MP M G E Sbjct: 1062 EILLAEDNTVNQRLAVKILEKYHHVVTVVGNGKEAVDAVRHKKFDVILMDVQMPIMGGFE 1121 Query: 64 LARRATELDPDLKVMF--ITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + E + L I A A+ D A++ LSKP L+ + + Sbjct: 1122 ATGKIREYERSLGSQRTPIIALTAHAMMGDREKCIQAQMDEYLSKPLQQNHLIQTILKCA 1181 Query: 119 TI 120 T+ Sbjct: 1182 TL 1183 >gi|325529261|gb|EGD06214.1| DNA-binding response regulator CreB [Burkholderia sp. TJI49] Length = 235 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ IL+ ED+ + ++ ALG G + V C G +A D++R+ L++ D+ +P++ Sbjct: 1 MNQPSILVVEDEMAIADTIVYALGTDGMQTVHCTLGQAALDRLRDTRVDLVVLDVGLPDL 60 Query: 60 DGIELARRATELDPDLKVMFITG 82 G E+ RR D+ V+F+T Sbjct: 61 SGFEVCRRLRTFS-DVPVIFLTA 82 >gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 225 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ EDD+ + R L +AL GY V S G + RE L++ D ++P MD Sbjct: 1 MKERILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ +R L + ++ +T + ++KPF L +L+ + LL Sbjct: 61 GLEVCQRLRTL-CNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALL 117 >gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 7/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D+ D+ + + + GYEVV+ +G+ A D R+E F L++ DI+MP+ DG Sbjct: 2 SRILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIMMPDTDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 ++ E D+ V+ + +A D V ++KPF R+L+ + ++ Sbjct: 62 TACKKIKEF-KDIPVIML---SARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVI 116 >gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1823 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ L + GY NG A + +R++ + ++L D+ MP+MDG+E Sbjct: 1534 RILLAEDNLVNQKVATHLLERIGYRADIAGNGLEALEALRKQFYDVVLMDVQMPQMDGLE 1593 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNR 116 RR + P+ I A A+ D A ++KP +L N +++ Sbjct: 1594 ATRRICQEWPEQLRPRIIAMTANAMQGDREKCLAAGMNDYITKPVRREELANALSK 1649 >gi|294625168|ref|ZP_06703811.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600540|gb|EFF44634.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 690 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 Q++L+ EDD+ +R + + L + GY+ + +A + P LL+TD+ +P ++ Sbjct: 570 QQVLVVEDDEQVRLLVTELLSELGYQADVVADADAAL-PILASPRRIDLLVTDVGLPGLN 628 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 629 GRQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVL 686 >gi|255010427|ref|ZP_05282553.1| putative regulatory protein [Bacteroides fragilis 3_1_12] gi|313148230|ref|ZP_07810423.1| two-component system response regulator [Bacteroides fragilis 3_1_12] gi|313136997|gb|EFR54357.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 389 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMR----RFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIV 55 M KIL +D+ D+ ++ + + K YE +NG A K+ E P F ++L+DI Sbjct: 1 MAAKILSVDDELDLEVLLTQYFRRQIRKGEYEFAFAHNGLEALQKLLETPDFDIILSDIN 60 Query: 56 MPEMDGIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNE 113 MPEMDG+ L + EL +P +K + ++ + + N S K A +KP L DL Sbjct: 61 MPEMDGLTLLAKINELKNPAMKCIMVSAYGDMD-NIRSAMNKGAFDFATKPIDLEDLSRT 119 Query: 114 VNR 116 + + Sbjct: 120 IEK 122 >gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1062 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD + L K+GY V + N+G A ++ E F L+L D+ MP M+GI Sbjct: 939 RRILLAEDDPLSSLTCKRMLEKSGYSVTAANDGQEALQRLTENDFDLILMDVQMPVMNGI 998 Query: 63 ELA---RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E R A L + ++ +T +A A ++KP L + R+ Sbjct: 999 EATKAIRGANNLGAKSSIPIVAMTAYAMTGDKESFLAAGMNGYIAKPVDKGALFEAIERV 1058 Query: 118 LTIK 121 L K Sbjct: 1059 LHTK 1062 >gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 15/115 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E+P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI 108 >gi|223935712|ref|ZP_03627628.1| response regulator receiver protein [bacterium Ellin514] gi|223895720|gb|EEF62165.1| response regulator receiver protein [bacterium Ellin514] Length = 888 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+A+D +R+ + L K GYEVV+ +GA K E +L+L D ++P+M G Sbjct: 5 QKILVADDSLTIRKLVEGVLTKDGYEVVTAVSGADCLAKAVSEKPTLILLDYILPDMQGT 64 Query: 63 ELARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E+ R PD + +M G A L D N A L+KPF L + +L Sbjct: 65 EVCRSLIN-SPDTWEIPVLMMSSNGTAIRQLYQDLN--NVADYLTKPFAPSVLKAVIGQL 121 Query: 118 L 118 L Sbjct: 122 L 122 >gi|153814400|ref|ZP_01967068.1| hypothetical protein RUMTOR_00610 [Ruminococcus torques ATCC 27756] gi|317500109|ref|ZP_07958344.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331087664|ref|ZP_08336591.1| hypothetical protein HMPREF1025_00174 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848796|gb|EDK25714.1| hypothetical protein RUMTOR_00610 [Ruminococcus torques ATCC 27756] gi|316898594|gb|EFV20630.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330410356|gb|EGG89789.1| hypothetical protein HMPREF1025_00174 [Lachnospiraceae bacterium 3_1_46FAA] Length = 541 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ILL +D++++ + +I+ + + G+ VV +NG A + + E +++TDI MP MDG Sbjct: 6 ILLVDDEEEVIQAIIRKINWEELGFSVVGYADNGIKALEMIEESQPDVVMTDIKMPYMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +EL P +K++ TGF ++ + + + KP + +L+N +L Sbjct: 66 MELCSHIRREYPAMKIVLFTGFDEFEYAKEAVHLEVEEYILKPVNSVELINIFTKL 121 >gi|153800917|ref|ZP_01955503.1| response regulator [Vibrio cholerae MZO-3] gi|153828119|ref|ZP_01980786.1| response regulator [Vibrio cholerae 623-39] gi|124123508|gb|EAY42251.1| response regulator [Vibrio cholerae MZO-3] gi|148876361|gb|EDL74496.1| response regulator [Vibrio cholerae 623-39] Length = 368 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 86 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 87 VEEVSSSYPSLPLVVVSATEEMA 109 >gi|94967103|ref|YP_589151.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94549153|gb|ABF39077.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 934 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLA+D + K L AGYEVV+ +NGA+A K+ E L + DI MP Sbjct: 1 MALKILLADDSMTAQNMGKKILTDAGYEVVAVSNGAAAVKKIAEINPQLCILDIYMPGYT 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRL 117 G+E+ +++ + + V+ G P+ A A V+ KPF +L+ V+R Sbjct: 61 GLEVCEKIKSSSVTARIPVLLTVG-KMEPYKPEEGARVRADGVIVKPFEASELLRAVHRF 119 >gi|148548249|ref|YP_001268351.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148512307|gb|ABQ79167.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 220 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + L + GY + +G S ++ E F LL+ D+ +P MDGIE Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLLILDLGLPRMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 L RR L V+ +T A+ D A +A L KPF L +L + LL Sbjct: 62 LLRRLRAGGDSLPVLILTARDAL---DDRIAGLDAGADDYLVKPFDLNELKARLRALL 116 >gi|326796472|ref|YP_004314292.1| Fis family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547236|gb|ADZ92456.1| two component, sigma54 specific, transcriptional regulator, Fis family [Marinomonas mediterranea MMB-1] Length = 450 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ K+L+ EDD + L L AGY+ + A ++++ + ++++DI +P M Sbjct: 1 MNKVKLLVVEDDRGLAEALEDTLLLAGYDCSMVGSSEEAILSLKKQSYDMVVSDINLPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 DG L + T+ P+L +M +T + +A ++ L KPF +L+ + + Sbjct: 61 DGYGLLKHVTDHYPELPIMLMTAYGDIAHAVEAMREGAVDYLLKPFEEAELLEVIQK 117 >gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ECD227] Length = 949 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVISKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|325298032|ref|YP_004257949.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324317585|gb|ADY35476.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1336 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++D R F+ +L + Y V +NG A K++E L+++D++MP MDG EL Sbjct: 1088 LLVVDDNEDFRLFMRHSL-ELQYRVEVASNGQEALSKIQELQPDLVISDVMMPGMDGNEL 1146 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + + + V+ +T AV ++KPF++ LV + +L+ + Sbjct: 1147 CRLIKGDKRTAHIPVILLTARQAVESKVKGLETGADDYVTKPFNMTVLVLRIRKLIEL 1204 >gi|317152717|ref|YP_004120765.1| sigma-54 factor interaction domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942968|gb|ADU62019.1| sigma-54 factor interaction domain-containing protein [Desulfovibrio aespoeensis Aspo-2] Length = 443 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +D L + L +GYEV +C A + E L++TD MP+ G++ Sbjct: 6 RILAVDDSASTLEVLKRNLEPSGYEVFTCLRVDEALPLLDELNIDLVITDYRMPQATGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + PD ++M ITG+ ++ ++ + L KPF +L++ V R++ Sbjct: 66 LIKHVRGNYPDTEIMMITGYPSIPGAVEAIKDGAGEYLPKPFTTDELLSAVGRIV 120 >gi|255505528|ref|ZP_05346649.3| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255267413|gb|EET60618.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 251 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR L GY + +GA A D + + L++ DI+MP MDG +L Sbjct: 30 ILVVEDNADMRELFCTVLADHGYNSIPAADGAEALDIMDRQYIDLIVADIMMPNMDGYQL 89 Query: 65 ARRATELDPDLKVMFITG 82 + + + L V+ +T Sbjct: 90 TKALRDANYTLPVLMVTA 107 >gi|224370416|ref|YP_002604580.1| putative transcriptional response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223693133|gb|ACN16416.1| putative transcriptional response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 124 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN K IL+ ED++ + + L GY V NG + + L+L DI MP M Sbjct: 1 MNDKLILIIEDNEKSTKLVKDLLQYKGYRTVEAVNGLDGIESALKYRPQLILMDIQMPVM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 DG+E R+ E+ P+ + + + + A+ D A A +SKP + R + V+R Sbjct: 61 DGLEATRKLKEM-PETRSIPVVALTSWAMKGDEKAILEAGCDDYMSKPINTRSFIELVDR 119 Query: 117 LL 118 Sbjct: 120 FF 121 >gi|254464412|ref|ZP_05077823.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206685320|gb|EDZ45802.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 827 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+D R L L + G++V + GA A + F L+L DI MPE+DGIE Sbjct: 600 RLLIAEDNDINRELLATLLSQEGHQVTAVPGGAEAVEAAEAGRFDLILMDISMPEVDGIE 659 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R RA + ++ +T AA + A+VL+KP + +L + + R Sbjct: 660 ALRRIRAGQFAEGTDIVALTAHAAAEDHARILEAGFAEVLTKPVNKAELADVIAR 714 >gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 228 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++++ RF+ L GYE +G D + F ++L D+++PE++G+E Sbjct: 3 RILIIEDEENLARFVELELKHDGYETDVELDGRQGLDAALNQDFDVILLDLMLPELNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR E+ D ++ +T +V + KPF + +L+ V LL Sbjct: 63 VARRVREV-KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALL 116 >gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 973 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 6/126 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 +IL+AED++ + + L + GYEVV +GA A + ++ P F ++L D+ MP +DG Sbjct: 835 HRILVAEDNEINQEVIRAVLSRRGYEVVLVEDGAQAVEAIKTGPAFDIVLMDVQMPVLDG 894 Query: 62 I--ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 + A RA E M I A A+N D+ + + + KP +L + + + Sbjct: 895 LGATAAVRAWERAQGRPPMPIVALTANAMNEDAERCRAGGMDAHVGKPIKWTELFDVIEQ 954 Query: 117 LLTIKN 122 L + N Sbjct: 955 LCSAPN 960 >gi|119493631|ref|ZP_01624280.1| hypothetical protein L8106_18651 [Lyngbya sp. PCC 8106] gi|119452551|gb|EAW33735.1| hypothetical protein L8106_18651 [Lyngbya sp. PCC 8106] Length = 776 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D + R + AL GY+V S NG A R P L+L DI MP++ G E+ Sbjct: 13 ILVADDTLESLRLISNALSNRGYDVRSVTNGTLAIASARAAPPDLILLDIKMPDLSGYEV 72 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + L ++ V+FI+ ++ ++KPF + +++ + L Sbjct: 73 CQQLKQDSLTREIPVIFISALHEPFDKVEAFRVGGVDYITKPFQIEEMLVRIQSQL 128 >gi|116249802|ref|YP_765640.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254450|emb|CAK05524.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 244 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D ++KPF R LV V + Sbjct: 64 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVRAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|83648565|ref|YP_437000.1| sigma 54-dependent transcriptional activator [Hahella chejuensis KCTC 2396] gi|83636608|gb|ABC32575.1| sigma 54-dependent transcriptional activator containing CheY-like receiver domain [Hahella chejuensis KCTC 2396] Length = 452 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ +D+ D+R L L + E + N A + EE FSL+LTD+ MP+ + Sbjct: 1 MIKKVLIVDDEPDIRALLEITLSRMQIETRAAENITQAKQLLSEESFSLVLTDMNMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 GI+L + + V IT + ++ + +SKP LR+LVN +L Sbjct: 61 GIDLVAHIQKQSSNTPVAVITAYGSIDTAISALKAGAFDFVSKPVDLARLRELVNSALKL 120 >gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 54/106 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ +R F+ +L K GYEV+ +G A + R F ++L D+++P +DG + Sbjct: 4 ILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLMLPGIDGFTV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + +++ + ++ IT + L KPF L++L Sbjct: 64 CQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQEL 109 >gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 235 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 14/119 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD M++ L + + GY V C +G S D R +S ++ D+V+P + G + Sbjct: 13 QILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRYSAVVLDLVLPNIFGRD 72 Query: 64 LARRATELDPDLKVMFITGFAAVA-------LNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + D+ V+ ++ VA L D ++KPF R+L+ V Sbjct: 73 VCKTIKSEQEDMPVIVVSAITDVADKVLLLELGADD-------YVTKPFSPRELMARVQ 124 >gi|289628477|ref|ZP_06461431.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868791|gb|EGH03500.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 763 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F L + G++V+ + A A ++ P F ++ +DI MP M G+ Sbjct: 642 VLMVEDNQDIGTFTRPMLEQLGFQVLWVKSAAEALHELSGNPENFHVVFSDIAMPGMSGL 701 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL+ P + V+ TG++ + +L KP+ DL ++R ++ Sbjct: 702 ELSAEIEACYPWMPVVLTTGYSTEFATIAKDEAHRFDLLQKPYSREDLAAILHRAVS 758 >gi|288937383|ref|YP_003441442.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|288892092|gb|ADC60410.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 227 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + LL+ DI++P+++G + Sbjct: 2 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + ++ +T + L KPF +L+ V LL Sbjct: 62 IVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 1363 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 6/120 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 + ILLAED+ RR L K GY V + +NG A +++ R + + L+L D MPEMD Sbjct: 1232 KPILLAEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMARRGQEYCLVLMDCQMPEMD 1291 Query: 61 GIELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 G E R+ L+ + I A AL D A A + LSKP + L ++R Sbjct: 1292 GYEATRQIRRLETKSGRRTPIIALTANALEGDREACLAAGMDDYLSKPLTMGKLKAVLDR 1351 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 14/100 (14%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D R+ L L +GA A +K + E F L + D+++P+ DG +L Sbjct: 1090 VLVVDDQAAHRQILRSYLESWHMRCEEAADGAQAIEKAQREHFDLAILDLLLPDTDGFDL 1149 Query: 65 ARRATELDPDLKVMFIT--------------GFAAVALNP 90 A++ L P +K++ +T GF+A L P Sbjct: 1150 AQQLRRLSPSMKLVLLTAHHEQGQGERAVDAGFSAYLLKP 1189 >gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED D++ +L KAL +G+ V ++GA A ++ E + L++ D+ +P M G+E Sbjct: 2 RILLVEDHDELSLWLQKALSSSGFAVDLASDGAIADQLLQTERYELVVLDVSLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T + VA L+KPF + +L + LL Sbjct: 62 VLAQMRKRHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALL 116 >gi|225573118|ref|ZP_03781873.1| hypothetical protein RUMHYD_01309 [Blautia hydrogenotrophica DSM 10507] gi|225039522|gb|EEG49768.1| hypothetical protein RUMHYD_01309 [Blautia hydrogenotrophica DSM 10507] Length = 230 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A + +R+ F L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 383 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L L + GYEV N+GA A V E ++L DI MP M+G E+ Sbjct: 13 ILIVDDTPNNLHLLSSMLEEQGYEVRCANSGAIALRAVEMEHPDIILLDINMPNMNGYEV 72 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R +LDP D+ V+F++ + + ++KPF L +++ + ++++ Sbjct: 73 CER-LKLDPRTRDIPVIFLSALSETIDKVKAFRIGGIDYITKPFQLEEVLARLENHISLR 131 >gi|148266281|ref|YP_001232987.1| histidine kinase [Geobacter uraniireducens Rf4] gi|146399781|gb|ABQ28414.1| histidine kinase [Geobacter uraniireducens Rf4] Length = 525 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + ILL ED+ ++R+ L L + GY+V+ +G A ++ E + LL+ D+++P+ + Sbjct: 403 ETILLIEDNLEVRQLLKALLEQYGYKVIEAADGEDAIERFIEHQDDIQLLVLDVIIPKKN 462 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ ++ D++ +F +G++ ++ + + +SKP L+ ++ +L Sbjct: 463 GREVYNELKQIRHDIRALFTSGYSTDIISKNGIMEEGLDFISKPLAPSALLAKIREML 520 >gi|329890390|ref|ZP_08268733.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] gi|328845691|gb|EGF95255.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] Length = 776 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL A+D RR + L A +++VS NGA A + R + F L+L D+ MP MDG+ Sbjct: 646 RILAADDHPTNRRVVELILDGAVFDLVSVENGAQAVEAYRAQTFDLVLMDMQMPVMDGLT 705 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R + P + V+ +T A ++ A ++KPF + DL+ V L Sbjct: 706 AVREIRLHESVLGLPQVPVVMLTANALPQHLDEALAAGADHHMAKPFSVEDLLAMVADL 764 >gi|294635168|ref|ZP_06713676.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685] gi|291091430|gb|EFE23991.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685] Length = 446 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD + + L L G+ V + +G A ++ EP L+++D+ M EMDG+ Sbjct: 8 QLLLVDDDPSLLKLLGMRLSSEGFRVATATSGQEALRQLAREPIDLVISDLRMDEMDGMA 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 L + P + V+ +T ++ PD+ A V S Sbjct: 68 LFSEIQKRQPGMPVIILTAHGSI---PDAVAATQQGVFS 103 >gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1] gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 1099 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 6/104 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ + FL L + V NNG A +KV+ + L+ DI MP+MDG E Sbjct: 860 KILLVEDNKINQLFLSTLLKQKDIVVDIANNGLEAIEKVKTNNYDLIFMDIQMPQMDGYE 919 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKP 104 ++ + + + ++ +T A AL D N A + LSKP Sbjct: 920 TTKKIRKFNKSIPIIALT---AAALVHDKNKALEAGMNDHLSKP 960 >gi|317050305|ref|YP_004111421.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316945389|gb|ADU64865.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 354 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60 Q IL+AED++ + R L + LGK +V +G A + R+ + + +++TDI MP M+ Sbjct: 13 KQSILIAEDEEILGRQLGELLGKFFLKVDVARDGQDALELYRKNDGYDIVITDIRMPRMN 72 Query: 61 GIELARRATELDPDLKVMFITG 82 GIEL++ +DP+ K++ I+ Sbjct: 73 GIELSQAIKSMDPEQKIVVISA 94 >gi|258513430|ref|YP_003189652.1| response regulator receiver modulated CheW protein [Desulfotomaculum acetoxidans DSM 771] gi|257777135|gb|ACV61029.1| response regulator receiver modulated CheW protein [Desulfotomaculum acetoxidans DSM 771] Length = 308 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 18/133 (13%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVRE----------EPFSLL 50 ++ I++ +D +R FL + L +AGY +S NNG+ A+D + E L+ Sbjct: 173 DKNIMVVDDSATLRSFLKQVLTEAGYTNLSYYNNGSVAWDYLVSLVQDKGEQLFEEIQLV 232 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVA----LNPDSNAPKNAKVLSKPFH 106 +TDI MP+MDG L +R E P L+ + + F+++ L+ +A++ SKP + Sbjct: 233 ITDIEMPKMDGHHLTKRIKE-HPLLRKLPVVIFSSLITEDLLHKGYAVGVDAQI-SKPQY 290 Query: 107 LRDLVNEVNRLLT 119 L DL+ +++L++ Sbjct: 291 L-DLIGTIDKLIS 302 >gi|254293644|ref|YP_003059667.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042175|gb|ACT58970.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 223 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD + F+ K L +AG++V N+G + + + + F ++ D +MP+M+GIE Sbjct: 2 RVLVIEDDIEAADFVRKVLSEAGHDVAVENDGEAGLSRAQSDEFDAMVVDRMMPKMNGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + + +F+T V + L KPF +L+ V L Sbjct: 62 MLTTYRDTGGNTPALFLTALGDVENRVEGLKAGGDDYLCKPFAPSELIARVEAL 115 >gi|254476369|ref|ZP_05089755.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. R11] gi|214030612|gb|EEB71447.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. R11] Length = 423 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D RR L+ +L K G+EVV +G +A + +P L+L+D +MP M+G+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICLADPPDLILSDWMMPGMNGL 78 Query: 63 ELARRATELDPDLKVMFI 80 E R E D FI Sbjct: 79 EFCRAFREQSKDNYSYFI 96 >gi|206579174|ref|YP_002240684.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342] gi|290512113|ref|ZP_06551480.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55] gi|206568232|gb|ACI10008.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342] gi|289775108|gb|EFD83109.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55] Length = 227 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + LL+ DI++P+++G + Sbjct: 2 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + ++ +T + L KPF +L+ V LL Sbjct: 62 IVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|145396765|gb|ABP65341.1| histidine kinase [Lentinula edodes] Length = 1874 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPEM 59 ILLAED+ ++ +K L K G+ V NG+ A D + PF ++L D+ MP M Sbjct: 1689 ILLAEDNLVNQKLAVKILEKYGHSVEIAENGSLAVDAFKGRVAQGRPFDVILMDVSMPFM 1748 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E R E+ L + I A A+ D A + ++KP DL+N + Sbjct: 1749 GGMEATELIREHEMKHGLTPIPIIALTAHAMIGDRERCLQAGMDDHITKPLRRADLLNSI 1808 Query: 115 NRL 117 N+L Sbjct: 1809 NKL 1811 >gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630] gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13 [Clostridium difficile] Length = 230 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 15/122 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +DD D+ L + L +EV+ C++G + D +++ + L++ DI++P M+G + Sbjct: 3 KILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPAMNGYD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-------LSKPFHLRDLVNEVNR 116 + +L+ ++ V+ +T DS K + + L+KPF + + V V Sbjct: 63 VLTEIRKLN-NVPVLMLTA-------KDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQS 114 Query: 117 LL 118 L+ Sbjct: 115 LI 116 >gi|108760607|ref|YP_628793.1| response regulator [Myxococcus xanthus DK 1622] gi|108464487|gb|ABF89672.1| response regulator [Myxococcus xanthus DK 1622] Length = 169 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D DD R + L G+EV + NG A +K E ++L D+ +P MDG Sbjct: 42 KRVLVVDDFDDAREMYAEYLEFVGFEVDTARNGVEAVEKASEGEPDIILMDLSLPVMDGW 101 Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR + D+ VM +TG + + ++KP +DL N++ +L Sbjct: 102 EATRRIKQDSRTRDIPVMALTGHVLAGNAEHARDAGADEFVAKPCLPQDLENKIRNML 159 >gi|17228563|ref|NP_485111.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130414|dbj|BAB73025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1180 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 16/135 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 +++ IL+ +D +R+ L L K+GY+V+ NGA A ++++ P L+++D+ MP M Sbjct: 1047 LSKVILVVDDAISLRQTLSLTLQKSGYQVIQAQNGAEALEQLQRHPEIQLVVSDLEMPRM 1106 Query: 60 DGIELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPF-------HLRD 109 +G E + +P + V+ +T +A + LSKP+ H+ Sbjct: 1107 NGFEFLSH-IQHNPQYTKIPVIILTSRSAEKHRQLAKELGAKAYLSKPYLEHELINHIES 1165 Query: 110 LVNE----VNRLLTI 120 L+N +NRLLT+ Sbjct: 1166 LINSAKDYLNRLLTV 1180 >gi|298245488|ref|ZP_06969294.1| response regulator receiver sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297552969|gb|EFH86834.1| response regulator receiver sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 411 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 5 ILLAEDDDDMRRFLIKAL--GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+A+DD + R L + L V +C++ +RE + +++DI MP MDG+ Sbjct: 6 ILIADDDTALLRALPQTLYLRMGDIHVDTCDSAERGLAMIREHDYDAIVSDIKMPGMDGL 65 Query: 63 ELARRATELDPDLKVMFITG 82 EL R EL P+ + ITG Sbjct: 66 ELLARIQELRPETPTLLITG 85 >gi|253996628|ref|YP_003048692.1| response regulator receiver protein [Methylotenera mobilis JLW8] gi|253983307|gb|ACT48165.1| response regulator receiver protein [Methylotenera mobilis JLW8] Length = 122 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + +L AGY+V+ +G +K +E+ L+LTD MP MD Sbjct: 1 MAKTILAVDDSGSLRQMVAFSLKAAGYDVIQAVDGQDGLNKAKEKTVDLVLTDQNMPIMD 60 Query: 61 GIELARRATELDPDLKV--MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + L KV + +T ++ + A L KPF + L+ V +++ Sbjct: 61 GLTLIKNLRGLGSYQKVPILMLTTESSDEMKAKGKAAGANGWLVKPFDPKRLIEVVQKVI 120 >gi|296125149|ref|YP_003632401.1| response regulator receiver protein [Brachyspira murdochii DSM 12563] gi|296016965|gb|ADG70202.1| response regulator receiver protein [Brachyspira murdochii DSM 12563] Length = 122 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 M + IL+ +D + R + L K Y VVS ++G + + + + P +++TD+ MP+M Sbjct: 1 MAKTILIVDDSNTARASVEYTLKKGSYTVVSADDGTTGLEVLGKTPNVDMIITDLNMPKM 60 Query: 60 DGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DGIE + ++D ++ +T + + A + L KPF+ L++ V R Sbjct: 61 DGIEFIKHVRQVDQHKYTPILMLTTESQDEKKMEGKAAGASGWLVKPFNPTQLLDVVKRF 120 Query: 118 L 118 L Sbjct: 121 L 121 >gi|212639748|ref|YP_002316268.1| cheY-like receiver domain-containing protein [Anoxybacillus flavithermus WK1] gi|212561228|gb|ACJ34283.1| CheY-like receiver domain protein [Anoxybacillus flavithermus WK1] Length = 124 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED++ +R ++ L G+++ +G A + +++ + L+L D +MP G+E Sbjct: 3 KILLAEDEEVLRMLVVDTLEDEGHDIDEACDGEEAIEMIKQNEYDLILLDYMMPIYTGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + ++ ++ PD K + I +A + D +A ++KP+ +LV + +L Sbjct: 63 VIQQVRQM-PDKKHVKIMMLSAKSQQADQQRVLDAGADYFMAKPYSPLELVQRIEEIL 119 >gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704] gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704] Length = 221 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 65/119 (54%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED+ DM+ +++ + G+ ++ ++G A ++ P L + DI+MP +DG + Sbjct: 4 VLVAEDEKDMQDIIVEYMKGGGHSCITADDGIDAVTILKNTPVDLAILDIMMPHLDGFSV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + A E+ ++ ++F+T A + + K + ++KPF + L+ +VN LL Sbjct: 64 CKIAREM-YNIPIIFLT-----AKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALL 116 >gi|157376200|ref|YP_001474800.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318574|gb|ABV37672.1| two component, sigma54 specific, transcriptional regulator, fis family [Shewanella sediminis HAW-EB3] Length = 452 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD +R L+ L A YE ++ A K++ E F ++++D+ M + GI Sbjct: 5 KILLVEDDHSLREALLDTLLLAQYECTDVSSAEEAIIKLKGESFDMVISDVQMEGIGGIG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 L + + V+ +T +A + + NA K V L+KPF L+N+V+R + K Sbjct: 65 LLNYLHQ-HTQIPVLLMTAYATI--DNAVNAIKLGAVDYLAKPFAPEVLLNQVSRYMKPK 121 >gi|150009954|ref|YP_001304697.1| two-component system sensor histidine kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938378|gb|ABR45075.1| two-component system sensor histidine kinase/response regulator, hybrid [Parabacteroides distasonis ATCC 8503] Length = 887 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDDD++R FL + L ++ + NG A + EE SL+++D++MPEM+G EL Sbjct: 640 ILITEDDDEVRCFLERELSPH-FKTRTAANGKDALRVLEEEEISLVVSDVMMPEMNGFEL 698 Query: 65 AR 66 R Sbjct: 699 CR 700 >gi|39995943|ref|NP_951894.1| response regulator [Geobacter sulfurreducens PCA] gi|39982707|gb|AAR34167.1| response regulator [Geobacter sulfurreducens PCA] Length = 136 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 47/103 (45%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL A ++D L + + V +G A + PF ++LTD+VMP+MD I Sbjct: 4 SNILFAVENDCDLTILEELFDRNNTTVHRVGSGEEALATLHAMPFEIMLTDMVMPDMDAI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 LARRA + P L V T AL + + ++ KP Sbjct: 64 TLARRARRVSPGLTVFMYTDLPTRALRREISEAGIERIFDKPL 106 >gi|254228479|ref|ZP_04921905.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262393654|ref|YP_003285508.1| response regulator [Vibrio sp. Ex25] gi|151939067|gb|EDN57899.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262337248|gb|ACY51043.1| response regulator [Vibrio sp. Ex25] Length = 368 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +NQK+++ DDD + R + A L G++VV NG A ++RE L+L D+ MP + Sbjct: 17 VNQKLIMLVDDDPIFRKVTNAYLESQGFKVVEAENGLEALQQLRECQPDLILCDLSMPVL 76 Query: 60 DGIELARRATELDPDLKVMFITG 82 DGIE + P L ++ ++G Sbjct: 77 DGIEFVEEVSLEYPYLPLIVVSG 99 >gi|332290968|ref|YP_004429577.1| two component, sigma54 specific, transcriptional regulator, Fis family [Krokinobacter diaphorus 4H-3-7-5] gi|332169054|gb|AEE18309.1| two component, sigma54 specific, transcriptional regulator, Fis family [Krokinobacter diaphorus 4H-3-7-5] Length = 446 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD ++ L + L Y + A +R+ LL+TD+ MPE+DG Sbjct: 6 ENILIVDDDINILELLQRHLQSWNYHTYKAVSVKEAVQILRDTHIDLLITDLKMPEIDGT 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 EL +E P L + +TG+ +V DS A + V L+KPF +L +N+ Sbjct: 66 ELINFVSEHYPQLPKLIVTGYPSVQ---DSLAAIKSGVVDYLTKPFTKIELKAAINK 119 >gi|328958301|ref|YP_004375687.1| regulator of chemotaxis and motility [Carnobacterium sp. 17-4] gi|328674625|gb|AEB30671.1| regulator of chemotaxis and motility [Carnobacterium sp. 17-4] Length = 120 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + +++ +D MR L L K GY VV+ NG A +K + E +L+ DI MPEM Sbjct: 1 MTKNVMIVDDAAFMRMKLKDILEKNGYNVVAEAQNGIEAVEKYKTEKPNLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 DG++ + DP +V+ + + D+ + KPF Sbjct: 61 DGVDALKAIKAFDPAARVVMCSAMGQQGMVMDAIRSGAVDFIVKPF 106 >gi|328953462|ref|YP_004370796.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] gi|328453786|gb|AEB09615.1| response regulator receiver protein [Desulfobacca acetoxidans DSM 11109] Length = 129 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%) Query: 24 KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 K Y +++ + A D RE + ++D+ MP+M+GIEL + +LDPD + +T F Sbjct: 25 KTDYTILTTTDPKQALDWHREHHADVFISDLRMPQMEGIELLKLVKDLDPDTPFIIMTAF 84 Query: 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ ++KPF ++ +N+ Sbjct: 85 GTIESAVEAMRQGAFDYITKPFRKEQILMTINK 117 >gi|327537523|gb|EGF24242.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1347 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I+L ED DD R L L G V ++GA+ ++K+RE + DI +P MDG Sbjct: 1217 QSIVLVEDIDDAREMLSGLLELRGLNVYEASDGAAGWNKIREINPHAAIIDIGLPVMDGH 1276 Query: 63 ELARRATELDP---DLKVMFITGFA 84 ELARR DP +K++ +TG+ Sbjct: 1277 ELARRIRS-DPAHSSIKLVALTGYG 1300 >gi|319900457|ref|YP_004160185.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415488|gb|ADV42599.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 1337 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED+D +R L K YEV++ ++G V E +++++D+VMP+M G Sbjct: 1079 DAKILIVEDNDSIRGMLANIF-KPFYEVLTASDGRQGLTLVHSEMPNIVVSDVVMPQMSG 1137 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + ++ + + V+ +T A+ N + ++KPF+ L++ N L+ Sbjct: 1138 TELCKHIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1196 >gi|298374311|ref|ZP_06984269.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] gi|298268679|gb|EFI10334.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] Length = 905 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDDD++R FL + L ++ + NG A + EE SL+++D++MPEM+G EL Sbjct: 658 ILITEDDDEVRCFLERELSPH-FKTRTAANGKDALRVLEEEEISLVVSDVMMPEMNGFEL 716 Query: 65 AR 66 R Sbjct: 717 CR 718 >gi|307731193|ref|YP_003908417.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585728|gb|ADN59126.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 247 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +DD +R + + L G++V + +G + K+R+E +L++ DI+MPE+D Sbjct: 1 MNPSILVVDDDPVVRNLVSQYLEGRGFKVATLEHGMALQSKLRDERPALVVLDIMMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GI R D+ V+ +T A + L D L KPF +LV Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADD-------YLGKPFEPSELVAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 IRTVL 118 >gi|289523805|ref|ZP_06440659.1| chemotaxis protein CheV [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502949|gb|EFD24113.1| chemotaxis protein CheV [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 307 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 KIL+ ED +RR + L K G+ V + ++G +A+D++ +E F L++TDI MP+MD Sbjct: 179 KILVVEDSPLIRRMIQDVLAKGGFHNVEAVSHGKAAWDRLSDEGENFDLVITDIEMPKMD 238 Query: 61 GIELARRATE 70 G+ L ++ E Sbjct: 239 GLTLTKKIKE 248 >gi|317151791|ref|YP_004119839.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316942042|gb|ADU61093.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 121 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ ++ + + L GY+ ++G A R + L + DI MP++ G+E Sbjct: 2 KILLVDDEVELVSAMAERLQLRGYDADWTDSGDDALVMARTCSYDLAVLDIRMPKISGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L RR EL P +K +F++G + + + L KP + DLV + Sbjct: 62 LKRRLFELCPSMKFIFLSGQGSES-DFKEGCAGGVCYLIKPIRIEDLVARIE 112 >gi|260221179|emb|CBA29485.1| Transcriptional regulatory protein fixJ [Curvibacter putative symbiont of Hydra magnipapillata] Length = 208 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 52/114 (45%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD+ +R L L GY V ++ S + + L+ DI M M G+EL Sbjct: 10 VYVVDDDEAVRDSLQWLLEGKGYRVRCFDSAESFLSRYDAREVACLIVDIRMGGMTGLEL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E L ++FITG V + DS + KPF LV+ V R+L Sbjct: 70 QTRLIEAKSPLPIVFITGHGDVPMAVDSMKKGAMDFIQKPFKEDQLVSLVERML 123 >gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60 Query: 61 GIELARR 67 G+++ +R Sbjct: 61 GLQVLQR 67 >gi|284029345|ref|YP_003379276.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808638|gb|ADB30477.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66 + ED++ + L LG+AGY V + GA A +K+ + L + DI +P+ +G++L R Sbjct: 1 MVEDEEGLVSALRSGLGRAGYAVDTALTGAEAVEKLATTAYDLAILDITLPDTNGLDLCR 60 Query: 67 --RATELD----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E++ +L+V+ +T A++A L+KPF L +L+ + LL Sbjct: 61 AVRRGEIEVASGRELRVLMLTARASLADRVRGLDEGADDYLTKPFALVELLARIRALL 118 >gi|224536917|ref|ZP_03677456.1| hypothetical protein BACCELL_01793 [Bacteroides cellulosilyticus DSM 14838] gi|224521472|gb|EEF90577.1| hypothetical protein BACCELL_01793 [Bacteroides cellulosilyticus DSM 14838] Length = 1316 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED +MR F+ K L + Y+V++ NG A + E +L+++DI+MPEMDG+EL Sbjct: 1072 LLVVEDSLEMRLFVTKQL-SSEYQVLTAVNGIEALKVLGEHTVNLVISDIMMPEMDGLEL 1130 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +ELD + ++ +T + + + KPF + L V+ LL+ Sbjct: 1131 CEHLKSELDYSHIPIILLTAKTTLQAKIEGMRLGADVYIEKPFSVEYLRVCVSNLLS 1187 >gi|188590317|ref|YP_001920163.1| chemotaxis protein CheY [Clostridium botulinum E3 str. Alaska E43] gi|251778089|ref|ZP_04821009.1| chemotaxis protein CheY [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500598|gb|ACD53734.1| chemotaxis protein CheY [Clostridium botulinum E3 str. Alaska E43] gi|243082404|gb|EES48294.1| chemotaxis protein CheY [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 119 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K +E+V +NGA A + ++E ++ DI MP++DGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNDFEIVGEASNGAVAVEMYKKEKPDVVTMDITMPDVDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ DP K++ + ++ D+ + KPF ++ + ++L Sbjct: 63 EAVKQIKAFDPSAKIIMCSAMGQQSMVMDAIRAGAKDFIVKPFQADRVLEAIKKVL 118 >gi|220914186|ref|YP_002489495.1| response regulator receiver protein [Arthrobacter chlorophenolicus A6] gi|219861064|gb|ACL41406.1| response regulator receiver protein [Arthrobacter chlorophenolicus A6] Length = 371 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ EDD D+R L++ L K G+ V G + ++VR L+ D+ +P++DG+E+ Sbjct: 11 VVIEDDPDIRGLLVRVLTKQGFIVTEAGEGLTGVEEVRRSQPDLVTLDLNLPDLDGLEVC 70 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 + E VM A L+ + A + +SKPF R+L + +N L Sbjct: 71 KLLREFSDAFIVMLTA--RADELDKLTGLDNGADEYISKPFSPRELQSRINALF 122 >gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 224 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 40/64 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG++ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLQ 61 Query: 64 LARR 67 + +R Sbjct: 62 VLQR 65 >gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 224 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 40/64 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG++ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLQ 61 Query: 64 LARR 67 + +R Sbjct: 62 VLQR 65 >gi|116750532|ref|YP_847219.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699596|gb|ABK18784.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 458 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD + + L + V+ +G A D ++ L++TD+ MP M G+ Sbjct: 5 RTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGMGGM 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +L L V+F+T + ++ + L+KPF RDLV +V +L Sbjct: 65 DLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEIL 120 >gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 219 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+ + L ALG+ GY V +G A ++ E F L++ D+ +P MDG Sbjct: 2 RILVVEDDESLGSGLCTALGQDGYTVDWLKDGLHASQALQSEHFDLVILDVGLPRMDGFS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + L ++ V+ +T A+ L KPF + +L V L+ Sbjct: 62 VLKNMRLLKSEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALI 116 >gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 231 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED+ + RF+ L GY+V C +G KV E L+L DI++P ++G Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62 Query: 62 IELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 IE+ R+ + ++ ++ +T + + DS A ++KPF + +L+ + Sbjct: 63 IEICRKIRQ-HSNVPIIMVTAKDDIPDRVMGLDSGAD---DYVTKPFAIEELLARI 114 >gi|306812085|ref|ZP_07446291.1| Phosphoglycerate transport system transcriptional regulatory protein [Escherichia coli NC101] gi|305854589|gb|EFM55026.1| Phosphoglycerate transport system transcriptional regulatory protein [Escherichia coli NC101] Length = 415 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 8 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQTWIQPDWPGIVLSDVCMPGCSGIDL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D + ++ ITG V + D+ L KP L LV E R Sbjct: 68 MMLFHQDDQQIPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 122 >gi|294673053|ref|YP_003573669.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294472787|gb|ADE82176.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 1314 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 9/124 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+ +D +DMR+FL K Y +++ +G A +++ S++++D +MP MDG Sbjct: 1063 QSMLIVDDSEDMRQFLENNF-KDKYHIITAGDGIEALHLLQQHQVSIIISDWMMPRMDGA 1121 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 E RR + + F+ A D++ K V + KPF ++ L + + Sbjct: 1122 EFCRRVRQNPLTSHIPFVM---LTAKTDDNSKVKGMDVGADAYIEKPFSVQYLEACIRNI 1178 Query: 118 LTIK 121 L I+ Sbjct: 1179 LQIR 1182 >gi|260172966|ref|ZP_05759378.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2] gi|315921245|ref|ZP_07917485.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695120|gb|EFS31955.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1355 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 13/126 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDDDMR++++ L + Y V +NG + E+ L+++D++MP MDG+E Sbjct: 1107 RVLVVEDDDDMRQYIVSLLSQQ-YIVYEASNGKEGLKEAVEQIPDLIVSDVMMPVMDGLE 1165 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLS-----KPFHLRDLVNEVNR 116 L + E + + V+ +T A ALN + + V++ KPF + L+ +++ Sbjct: 1166 LCKAIKEEMITAHIPVVLLT---AKALN--EHIEEGYSVMADDYVLKPFAPKVLLAKLDS 1220 Query: 117 LLTIKN 122 L+ +N Sbjct: 1221 LIKNRN 1226 >gi|284035483|ref|YP_003385413.1| histidine kinase [Spirosoma linguale DSM 74] gi|283814776|gb|ADB36614.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1388 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED DD+R +L K L Y+V+ +GA +D L++ D+ MP MDG + Sbjct: 1133 VLLVEDQDDIRTYL-KGLFVEKYDVMEAADGAQGWDIATRTLPDLIIADVAMPIMDGFAM 1191 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R DP + V+ +T V +SKPFH L V+ LL ++ Sbjct: 1192 THRLKS-DPRTSHIPVIMLTAKGTVDSQLTGLETGADDYVSKPFHPILLQARVSNLLAVR 1250 >gi|237653314|ref|YP_002889628.1| response regulator receiver protein [Thauera sp. MZ1T] gi|237624561|gb|ACR01251.1| response regulator receiver protein [Thauera sp. MZ1T] Length = 122 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+A+D+ ++ L + + GY+V N+G A ++R L+L D++MP+ Sbjct: 1 MDKKVLIADDEQNIVISLEFLMKREGYQVEVANDGEEAVRRIRASRPDLVLLDVMMPKKS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G E+ + E+ D ++ I A D+ K + ++KPF R+LV++V Sbjct: 61 GFEVCQ---EIRSDPEMAGIRILMLTAKGRDTEVAKGLALGADAYMTKPFSTRELVDKVR 117 Query: 116 RLL 118 LL Sbjct: 118 SLL 120 >gi|95930680|ref|ZP_01313414.1| response regulator receiver protein [Desulfuromonas acetoxidans DSM 684] gi|95133332|gb|EAT14997.1| response regulator receiver protein [Desulfuromonas acetoxidans DSM 684] Length = 125 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ ED++ + + L GYEV+ NG +A D + +E L+L DI++PE+DG Sbjct: 3 KRTILVVEDEESLLKLESILLTSKGYEVIGVPNGLAALDVLDKEKVDLVLLDIMLPEIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E+ RR +P+ + + + A + D + ++KPF ++ + R + Sbjct: 63 FEVCRRIKN-NPETQKLPVIMLTAKKSHEDMSRGDEVGADWYVTKPFKSAKVIETIERFI 121 >gi|86355704|ref|YP_467596.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86279806|gb|ABC88869.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 251 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+EL Sbjct: 10 IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGMEL 69 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D ++KPF R LV V + Sbjct: 70 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------FITKPFSQRLLVERVRAV 121 Query: 118 L 118 L Sbjct: 122 L 122 >gi|13471003|ref|NP_102572.1| response regulator [Mesorhizobium loti MAFF303099] gi|14021746|dbj|BAB48358.1| response regulator [Mesorhizobium loti MAFF303099] Length = 123 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +K+++ ED++ +M+ F LI+A +GYE V NG A D R+ L+L DI +P Sbjct: 1 MPKKVMIVEDNELNMKLFRDLIEA---SGYETVRTRNGLEALDLARKHRPDLILMDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 E+ G+E+ + E D DL V+ + A A+ D + +SKP + + + Sbjct: 58 EVSGLEVTKWLKE-DDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETI 116 Query: 115 NRLL 118 L Sbjct: 117 KSYL 120 >gi|116620764|ref|YP_822920.1| two component sigma54-specific Fis family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223926|gb|ABJ82635.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Solibacter usitatus Ellin6076] Length = 482 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D+ D+R L L + GY V +NG K+ + L+L D++MP+M G+ Sbjct: 14 KILVIDDELDIREGLHDLLTLEGGYIVELAHNGGEGLQKLEGASYDLVLLDLMMPDMSGM 73 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ ++ D + + IT + +V D+ SKP+ L+ E++R++ Sbjct: 74 DVLQQVRTRDRETPIFMITAYGSVEAAVDALKLGANDYFSKPWDNEKLLIEIDRMI 129 >gi|117925769|ref|YP_866386.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609525|gb|ABK44980.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 899 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-- 61 ++LL ED+ ++ + L + G++ + GA A V+E PF L+L DI MPEMDG Sbjct: 596 RLLLVEDNPINQKVALGMLKRFGFQATVVDRGAKALQAVKEHPFDLILMDIQMPEMDGYA 655 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLL 118 A R E + I+ A A++ D A LSKP L + + R L Sbjct: 656 TTAAIRHWERESGTPRQPISALTANAMSGDRELCLAADMDDYLSKPLKQEALWDLLKRWL 715 >gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 223 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ RFL L +E V +G + + E F +L D+++P+++ Sbjct: 1 MKKKILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ RR + ++ ++ IT V + KPF + +L+ + +L Sbjct: 61 GIEVCRRIRK-TSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSIL 117 >gi|330809673|ref|YP_004354135.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377781|gb|AEA69131.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 642 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 11/119 (9%) Query: 4 KILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 K+L+ +DD R LI+ LG + V+ +GA A + P L++TD+ MP+M Sbjct: 530 KVLVVDDDSLVLTSTRLLIEDLG---HRVLCAASGAQALELHERNPDIDLVITDMAMPQM 586 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG +LA+ + P L ++ TG+A + P+ L KPF DLV + + + Sbjct: 587 DGAQLAKLLRDRQPTLPIILATGYAERLEGFATQLPR----LIKPFKQIDLVQIIGQTM 641 >gi|325299779|ref|YP_004259696.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319332|gb|ADY37223.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1437 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED++++R+F + L + Y V+ NG + D +E ++++D++MPEMDGIEL Sbjct: 1176 ILLVEDNEELRKFTGRVL-RHEYRVLEAENGRAGLDMALKEIPDIIISDVMMPEMDGIEL 1234 >gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 228 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ + + L G+E+ +G +A + F L++ D+++P MDGI+L Sbjct: 3 VLLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVMLPSMDGIQL 62 Query: 65 ARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E D ++ ++ +T LN ++ + KPF + +L + LL Sbjct: 63 CKHIRERDENIPILMLTALDSTENIVTGLNSGAD-----DYMVKPFKMIELATRLKTLL 116 >gi|313109110|ref|ZP_07795082.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa 39016] gi|310881584|gb|EFQ40178.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa 39016] Length = 559 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 436 KRILVVDDSLTVRELERKLLLGRGYDVAVAVDGMDGWNALRSEHFDLLITDIDMPRMDGI 495 Query: 63 E---LARRATELDPDLKVMFIT 81 E L RR + L L VM ++ Sbjct: 496 ELVTLVRRDSRLQ-SLPVMVVS 516 >gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 248 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + KIL+ +D+ +R L +L AG+ V + G A +E L++ D+++P+ D Sbjct: 9 ITAKILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVMLPDFD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ RR E D+ V+F+T + ++KPF L ++V + +L Sbjct: 69 GYEVLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVIL 126 >gi|295103863|emb|CBL01407.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 230 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + + L GY V S N +A + +R+ F L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|294507115|ref|YP_003571173.1| Signal transduction histidine kinase [Salinibacter ruber M8] gi|294343443|emb|CBH24221.1| Signal transduction histidine kinase [Salinibacter ruber M8] Length = 659 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R + + L +G+EV +GA A + + ++ TD MPEM G EL Sbjct: 546 ILVVDDEEMVRSTVTRLLTLSGHEVDRAASGAKALEMFSAGAYDIVFTDFGMPEMTGAEL 605 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 A + P L V+ +TG+ +S + +LSKPF +L + + Sbjct: 606 AHALKDEAPALPVVLLTGYTET----ESAHDEVDGILSKPFKRDELDTAIQK 653 >gi|291542560|emb|CBL15670.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 225 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + ++++L + Y V C +G A + + E + L+L D+ +P DG+ Sbjct: 2 RILVIEDERALCETIVRSLKRLAYSVDFCYDGNKANELLGIEKYDLVLLDLNLPGADGMT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R + D D V+ ++ VA + L+KPFHL +L Sbjct: 62 VLRTLRQTDRDTGVLILSARCEVADKVEGLDAGANDYLTKPFHLEEL 108 >gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 235 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + NG A D E L + D+++P+MDG Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR V+F+T ++KPF L ++V + +L Sbjct: 69 VTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVL 123 >gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1521 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R + LGK G+E +G A + + F +L DI MP +DG+E Sbjct: 1402 ILVVEDERTNRAVAQRLLGKLGHEAACAESGEEAIEILATAAFDCILMDIQMPGLDGVET 1461 Query: 65 ARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R + L D+ ++ +T A A+ D +A + ++KPF L +L +E+ R+L Sbjct: 1462 TRAIRDTLGLDIPIIALT---AHAMEGDRKRFLDAGMQGYVAKPFDLPELQDELERVL 1516 >gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 55/114 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ ED++ + R + + L GYE +C +G + E + L+L D+ +P +DG+E Sbjct: 2 HILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + V+ ++ + + L+KPFH +L + L Sbjct: 62 ILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSL 115 >gi|291288614|ref|YP_003505430.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] gi|290885774|gb|ADD69474.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] Length = 121 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 +KIL+ +D MR+ + L +GY+VV +G A K+ E F+L+++D+ MP MDG Sbjct: 2 KKILIVDDAITMRQLVAATLKASGYDVVDARDGVDALKKLDAEGRFNLIVSDVNMPNMDG 61 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 I + +A+ V+ +T + + + + KPF DL+ V +++ Sbjct: 62 ITFLKEVKASSKHKFTPVIMLTTESQAGIKEEGRKAGAKAWIVKPFKPNDLLAVVKKII 120 >gi|212712169|ref|ZP_03320297.1| hypothetical protein PROVALCAL_03251 [Providencia alcalifaciens DSM 30120] gi|212685216|gb|EEB44744.1| hypothetical protein PROVALCAL_03251 [Providencia alcalifaciens DSM 30120] Length = 415 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 51/100 (51%) Query: 22 LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 L +AGY V +C+N +A + V + ++L+D+ MPE GIEL D L ++ IT Sbjct: 25 LAQAGYRVYACDNPLTAKELVHRDWCGIVLSDVCMPECSGIELMSLFLSKDKHLPMVLIT 84 Query: 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 G V + ++ L KP + L+ +V++ L + Sbjct: 85 GHGDVPMAVEAVKMGAWDFLQKPVNPEYLLEQVSKALAAR 124 >gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 230 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD +R + AL KAG VV +G+ + + L++ DI MPEMD Sbjct: 1 MAATILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E RR + ++ ++F++ + + D ++KPF R+LV Sbjct: 61 GLETCRRIRKTS-EVPILFLSARDEEIDRVLGLEIGGDD-------YVTKPFSPRELVAR 112 Query: 114 VNRLL 118 VN +L Sbjct: 113 VNVIL 117 >gi|218528562|ref|YP_002419378.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] gi|218520865|gb|ACK81450.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] Length = 124 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGI 62 IL+ EDDD +R + L G+EV + +A+ + + F L TDI MP MDG+ Sbjct: 12 ILVVEDDDLVRMVAVDMLEGVGFEVTEADTADAAWSLLEKGCAFGALFTDIDMPGSMDGL 71 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 LA R E P ++++ +G + D++ P + + L KP+ L+ + Sbjct: 72 TLAGRVAERWPRIRLVVTSGRYGLR---DADMPDDGRFLLKPYRQDQLLEAI 120 >gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R L L GY V + G A + + E +L++ DI+MP+MD Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMD 60 Query: 61 GIELARRATE 70 G+E+ +RA E Sbjct: 61 GLEVCKRARE 70 >gi|152997384|ref|YP_001342219.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150838308|gb|ABR72284.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 902 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AEDDD R L+ L KAG +++ +G A + L++TDI MP GIE Sbjct: 686 RVLVAEDDDWSRDILVSLLEKAGCQIIEAADGEQAIKAFKASSPDLVMTDIRMPNKTGIE 745 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDL 110 L + D +++ + A L + A + +V++KP+ + D+ Sbjct: 746 LLKFIQHEDQK-QLIPVIAVTASTLEHEQQALLDEGFWQVIAKPYQIEDI 794 >gi|91792724|ref|YP_562375.1| sigma-54 factor, interaction region [Shewanella denitrificans OS217] gi|91714726|gb|ABE54652.1| sigma-54 factor, interaction region [Shewanella denitrificans OS217] Length = 469 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD+ R +++ L ++ Y++ S + SA K++ P L+ +D + ++ G++L Sbjct: 22 ILVVEDDETQRELIVQILSQSHYQIDSADRVESAILKIKANPPDLVFSDWKLGQLTGMDL 81 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL---VNEVNRLLTIK 121 PD+ + T + + D+ L+KP+ + L + +V + LT+K Sbjct: 82 LNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLTKPYQRQSLLLSIGKVFKALTLK 141 >gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 992 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ ++ + L K G+ V +GA A + VR P+ L+L D+ MPEMDG++ Sbjct: 745 RILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVRSRPYDLVLMDVQMPEMDGLQ 804 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLV 111 L + + I A A+ D +A + +SKP R L+ Sbjct: 805 ATAAIRALTGGAERVPIVAMTANAMRGDDRMCLDAGMDRYISKPIDRRKLM 855 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 6/126 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVM 56 ++IL+ +D R L + L G V SC + SA ++ P+ + D M Sbjct: 598 GRRILVVDDSPINRDVLERQLRGFGVIVASCADAESALAELGRAAATGTPWEAAIIDARM 657 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P + G +L R +P L M + ++ L+P+ +PK + KP + ++ + R Sbjct: 658 PGVTGSDLIGR-IRAEPVLAPMGLIIASSQGLSPEDGSPKADAFIHKPLRRQTILAVLAR 716 Query: 117 LLTIKN 122 +L + + Sbjct: 717 VLGLPH 722 >gi|46203030|ref|ZP_00052194.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 169 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMP-EMDG 61 +L+ ED+ +R L GY V+ +G A + LLLTD+V+P ++ G Sbjct: 31 VLVVEDEAAVREIACAILSDLGYRVLEAADGEEALRVFGQNTTAIDLLLTDVVLPGKVRG 90 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL+ R + P++KV+F++G+ ++ +++ KPF L +V +L + Sbjct: 91 RELSERVRAVRPEVKVLFMSGYTENSIVHHGRLDDGVQLIGKPFKREQLARKVAEVLGV 149 >gi|299139004|ref|ZP_07032181.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX8] gi|298599158|gb|EFI55319.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX8] Length = 126 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 2/110 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ + L L ++G+E + +G A + + E +L++D++M M GIE Sbjct: 12 RVLVADDEQVIANTLAIILNQSGFEARAVYSGEKAVEIIDEFQPDMLISDVIMTGMTGIE 71 Query: 64 LARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSKPFHLRDLV 111 A + E P K++ +G AA A L + ++L+KP H DL+ Sbjct: 72 AAIQMREKLPKCKILLFSGQAATADLLERARSQGHEFEILAKPVHPTDLL 121 >gi|260172758|ref|ZP_05759170.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. D2] gi|315921046|ref|ZP_07917286.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. D2] gi|313694921|gb|EFS31756.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. D2] Length = 1322 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1075 LLVVEDTTDMLEFLAKNLGNT-YTIHTATNGKEALECLETTTVDLIISDIVMPHMDGFEL 1133 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1134 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1188 Query: 118 L 118 L Sbjct: 1189 L 1189 >gi|225872172|ref|YP_002753627.1| response regulator [Acidobacterium capsulatum ATCC 51196] gi|225793426|gb|ACO33516.1| response regulator [Acidobacterium capsulatum ATCC 51196] Length = 123 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 61/110 (55%), Gaps = 2/110 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+D+ + L L ++G+E ++ +G A + +L++D++M +++GI+ Sbjct: 9 KVLVADDERVIADTLAIILNQSGFEAMAVYSGEKAVEAAGNWQPDMLISDVIMTDLNGID 68 Query: 64 LARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSKPFHLRDLV 111 A + L P K++ +G AA A L+ ++L+KP H +DL+ Sbjct: 69 AAIKIRSLLPSCKILLFSGQAATADLLDRARGQGHEFEILAKPVHPQDLL 118 >gi|171912398|ref|ZP_02927868.1| regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 668 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ R L KAL V + + A + R P + ++ D MP+ +GIE Sbjct: 24 VLVVDDEKSHRDLLSKAL-TGTCRVCAVASVDEALAEARRTPPATVILDYQMPQTNGIEG 82 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ EL P L V+ +TG A + + + + + KPF L DL++ V+R + I + Sbjct: 83 LKKLRELYPGLPVVILTGHADLEIARKAIRLGAVEYMLKPFELNDLISVVSRNIQIAD 140 >gi|170724458|ref|YP_001758484.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169809805|gb|ACA84389.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella woodyi ATCC 51908] Length = 459 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V + +++R F LL+ DI +P GIE Sbjct: 17 VLIVDDEPGMRSFLKKALSKK-FALVETASSVEDAEQLRSRCHFDLLIVDIRLPGRSGIE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 76 WHEALNDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCI 130 >gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ R +L K L +AG+ V + NG E F L++ DI++P++DG Sbjct: 2 KLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGWR 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L E V+F+T +V+ L KPF +L+ V +L Sbjct: 62 LLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNIL 116 >gi|45440819|ref|NP_992358.1| response regulator [Yersinia pestis biovar Microtus str. 91001] gi|45435677|gb|AAS61235.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Yersinia pestis biovar Microtus str. 91001] Length = 430 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 42/80 (52%) Query: 26 GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAA 85 GY+ +NG A + +E PF L+LTD+ M EMDGIE + +P + ++ +T ++ Sbjct: 5 GYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDGIEALKAIKAYNPAIPILIMTAYSN 64 Query: 86 VALNPDSNAPKNAKVLSKPF 105 V ++ L+KP Sbjct: 65 VESAVEAIKAGAYDYLTKPL 84 >gi|325277332|ref|ZP_08142957.1| response regulator [Pseudomonas sp. TJI-51] gi|324097522|gb|EGB95743.1| response regulator [Pseudomonas sp. TJI-51] Length = 393 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DDD +R L L +G+ V+ NG E L++ D+ MP+M G+EL Sbjct: 8 LLIIDDDDVVRASLAAYLEDSGFSVLQAGNGQQGLQVFEEHQPDLVICDLRMPQMGGLEL 67 Query: 65 ARRATELDPDLKVMFITG 82 R+ +E P + V+ ++G Sbjct: 68 IRQVSERAPQVPVIVVSG 85 >gi|323138954|ref|ZP_08074015.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322395800|gb|EFX98340.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED ++ + K + +AG++V + +A + P+S+ L D +P+ DG+ Sbjct: 2 RILLVEDHLELASRVAKRVRQAGFDVDHVDTIEAAAQALVGRPYSVALLDRRLPDGDGLR 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L + ++ P+ ++M +T AV + L+KPFHL +LV + Sbjct: 62 LIPKIRQMQPESRIMILTALDAVDNRIEGLDAGADDYLTKPFHLDELVARIR 113 >gi|315635888|ref|ZP_07891150.1| two component response regulator [Arcobacter butzleri JV22] gi|315479867|gb|EFU70538.1| two component response regulator [Arcobacter butzleri JV22] Length = 608 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 55/106 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L EDDD+ R L L K +++ NG + ++ L++TDI MP MDGI++ Sbjct: 16 LLYVEDDDNTREELEYFLEKKVLKLIVAKNGQEGLELFKKHNPDLVITDIQMPVMDGIQM 75 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + E++P + + +T F+ + ++ + L+KP +L L Sbjct: 76 IKAIKEINPQVSTVIVTTFSDIEYLFEAIKLNISNYLTKPLNLYAL 121 >gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 229 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 14/123 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + K+L+ +D+ D+ L L K GYEV + +G +A +K ++ L+L DI+MP D Sbjct: 5 QSHKVLVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQD 64 Query: 61 GIELAR--RATELDPDLKVMFITG----FAAVALNPDSNAPKNAK--VLSKPFHLRDLVN 112 G+E R R T + ++F+T ++ VA A +N ++KP R L++ Sbjct: 65 GVETCRQLRETPESANSFIIFLTARSEEYSEVA------AFENGADDYITKPIKPRALMS 118 Query: 113 EVN 115 +N Sbjct: 119 RIN 121 >gi|313674179|ref|YP_004052175.1| two component, sigma54 specific, transcriptional regulator, fis family [Marivirga tractuosa DSM 4126] gi|312940877|gb|ADR20067.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Marivirga tractuosa DSM 4126] Length = 384 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ +R+ L + L Y+V NGA K+ E + L+L DI MP+MDG+E Sbjct: 3 KILLIDDEASIRQTLKEILEYEKYQVEEVANGADGLKKIENEHYDLVLCDIKMPKMDGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L E ++ + I+ + ++ +SKP L L+ V L Sbjct: 63 LLNAVYEKGIEIPFIMISAHGTIDNAVEATKKGAFDFISKPPDLNRLLVSVRNAL 117 >gi|312623073|ref|YP_004024686.1| two component transcriptional regulator, arac family [Caldicellulosiruptor kronotskyensis 2002] gi|312203540|gb|ADQ46867.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor kronotskyensis 2002] Length = 521 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 49/93 (52%) Query: 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVA 87 E+ S NG A + V+ +LL D+ MP MDGIE ++R + P K++FI+G+A Sbjct: 30 EIKSAKNGQEALEIVKSYTPDILLCDVRMPRMDGIEFSKRLKSIFPKCKIVFISGYAEKE 89 Query: 88 LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + KP ++ +++ + +++ I Sbjct: 90 YLLSAIRLNAIDYIEKPLNIEKIISTMKKVVEI 122 >gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++IL+ ED++ + R L L Y V +G + + + L+L D+++P ++ Sbjct: 1 MNERILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ RR + + V+ +T V + ++KPF + +L+ V +L I Sbjct: 61 GIEVLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRI 120 >gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 219 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ DMR+ + L GYE NG A ++ E + ++ DI+MPEM+GIE+ Sbjct: 1 MLLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIMMPEMNGIEV 60 Query: 65 ARRATELDPDLKVMFIT 81 + + D+ ++F+T Sbjct: 61 CKEIRK-TSDVPIIFLT 76 >gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + R L L K G+ +G +A EP+ ++ DI++P++D Sbjct: 1 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GIE+ +R +M ++ + A+ L D ++KPF R+L+ Sbjct: 61 GIEVCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADD-------YVTKPFSPRELLAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R L L GY V + G A + + E +L++ DI+MP+MD Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMD 60 Query: 61 GIELARRATE 70 G+E+ +RA E Sbjct: 61 GLEVCKRARE 70 >gi|169826303|ref|YP_001696461.1| putative response regulatory protein [Lysinibacillus sphaericus C3-41] gi|168990791|gb|ACA38331.1| Hypothetical response regulatory protein [Lysinibacillus sphaericus C3-41] Length = 384 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 48 SLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 S++ DIVMP+MDG+ L + EL PD++++F TGF AL D+ L KP + Sbjct: 50 SVVFLDIVMPDMDGLALGEKIQELLPDVEIVFTTGFDQYAL--DAFNLHAVDYLLKPIQI 107 Query: 108 RDLVNEVNRLLTIKN 122 L ++RL I N Sbjct: 108 TRLEKTLDRLEQINN 122 >gi|218778777|ref|YP_002430095.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218760161|gb|ACL02627.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 452 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 56/121 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L L G+EVV+ NG A ++ + L+L DI MP MD Sbjct: 1 MFPSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E ++ + P + V+ ITG + + + KP + +V +N L Sbjct: 61 GLETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNF 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|149916928|ref|ZP_01905429.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149822206|gb|EDM81597.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 123 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +DD +R L+ L +AG++ +G +++ + + L++TD+ MP M G Sbjct: 5 KKKLLIVDDDSMLRDALVHMLERAGHQCEGAADGDEGLERILDRGYDLVITDMRMPSMSG 64 Query: 62 IELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IE+ R L P+ + ++G+ + + A + VL KP R + V LL Sbjct: 65 IEMIRAVRRALGPNPPFILLSGYHDFEED-ELRAAGASLVLQKPLRPRTIRESVASLLA 122 >gi|149191763|ref|ZP_01870002.1| nitrogen regulation protein [Vibrio shilonii AK1] gi|148834405|gb|EDL51403.1| nitrogen regulation protein [Vibrio shilonii AK1] Length = 467 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R + K L A + + + S + E +L++DI MP +DGIEL Sbjct: 6 VWVVDDDSSIRWVMDKTLSSANIKCETFADAESVLMALERETPDVLVSDIRMPGIDGIEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R E PDL V+ +T + + ++ + L KPF + + + V R +T Sbjct: 66 LNRVQESAPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPKPFDIDETLTLVERAIT 120 >gi|114797095|ref|YP_760220.1| putative diguanylate cyclase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114737269|gb|ABI75394.1| putative diguanylate cyclase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 313 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L DD+ +I A+ + YEV +GA A + +RE L+L D++MPEMD Sbjct: 1 MTRATILVVDDEISNIEIINAILEDQYEVCFAISGAQALETMRELQPDLVLLDVLMPEMD 60 Query: 61 GIELARRATELDPDL---KVMFITGFAAVA 87 G E+ +R DPDL V+F TG A Sbjct: 61 GFEVCKRIKN-DPDLVDIPVIFTTGLGDTA 89 >gi|152988791|ref|YP_001351222.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150963949|gb|ABR85974.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 462 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62 ++LL +DD +R+ L + L AG + + ++ A D + + + ++++DI MP +DG+ Sbjct: 12 QVLLIDDDPHLRQALRQTLDLAGLKAATLDD-ARQLDTAQCKDWPGVVVSDIRMPGVDGM 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 EL + E D DL V+ ITG V L + L KPF L++ V R L ++ Sbjct: 71 ELLGQLHEQDADLPVILITGHGDVPLAVQAMRGGAYDFLEKPFPSDALLDSVRRALEVR 129 >gi|89901558|ref|YP_524029.1| Fis family two component sigma-54 specific transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346295|gb|ABD70498.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodoferax ferrireducens T118] Length = 477 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +DD DM R L L AGY V + + +A ++ E L+L+D+ +P DG+ Sbjct: 22 HLLVVDDDADMLRLLTIRLTAAGYRVTAVTSAEAAMTQLHIERPQLVLSDVRLPGRDGLA 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 L P L V+ +T + PD+ V L+KPF + L++++ + L++ Sbjct: 82 LFDDIRAQHPSLPVILLTAHGTI---PDAVQATERGVFSYLTKPFDGKSLLDKIAQALSL 138 Query: 121 K 121 Sbjct: 139 S 139 >gi|291514035|emb|CBK63245.1| Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Alistipes shahii WAL 8301] Length = 444 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ +RR + + +G GYEV + +S +R ++L D+ +P+ +G+E Sbjct: 3 KILIIDDEEQLRRLMARIIGLEGYEVAEAPDCSSGMKTLRRYDPDVVLCDVKLPDGNGVE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS-NAPKNA 98 + R E P +V+ +T + + PD A KN Sbjct: 63 MVSRIKEAAPATEVILLTAYGNI---PDGVQAIKNG 95 >gi|258592467|emb|CBE68776.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 1008 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L+ LG G+E V+ +G + +++ E F L++TDI M M G + Sbjct: 879 RLLVIDDEPLLGETLVDLLGLLGHEAVAVTSGEAGIARLQAERFDLVMTDIGMAGMSGWD 938 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR L V+ ++G+A + VL+KP+ + L + ++R++ Sbjct: 939 VARAVKADWSQLPVILVSGWAGMMERDQIEGAGIDAVLAKPYTITQLEHALSRVV 993 >gi|239908291|ref|YP_002955032.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239798157|dbj|BAH77146.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 133 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 NQ ILL EDD R L + L K GY V +G A + ++ F L++ D+VMP +DG Sbjct: 4 NQTILLVEDDVINRVALCRFLSKQGYAVHPAKDGDEALENYNKKVFDLIIMDLVMPGIDG 63 Query: 62 IELARR 67 E A+R Sbjct: 64 AETAKR 69 >gi|224367151|ref|YP_002601314.1| predicted anti-anti-sigma factor (response regulator family protein) [Desulfobacterium autotrophicum HRM2] gi|223689867|gb|ACN13150.1| predicted anti-anti-sigma factor (response regulator family protein) [Desulfobacterium autotrophicum HRM2] Length = 235 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ L GYEV + NG + +E ++ TD+ MP MDGIE Sbjct: 2 KILVIDDEKPTLAMFKLFLTAYGYEVHTAENGEQGLTRFKEILPGIVFTDLKMPGMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFA 84 + R+ + +P+ +V+ ITG Sbjct: 62 VLRQIRQFNPESQVIIITGHG 82 >gi|154503437|ref|ZP_02040497.1| hypothetical protein RUMGNA_01261 [Ruminococcus gnavus ATCC 29149] gi|153795537|gb|EDN77957.1| hypothetical protein RUMGNA_01261 [Ruminococcus gnavus ATCC 29149] Length = 501 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMP 57 M+ K+L+A+D+ +R+ + K + + NG D + +EP LLL DI MP Sbjct: 1 MSLKLLIADDEYFIRQRIKKIIPWEKLNLTFAGEAENGQQVIDHLEKEPVDLLLLDIKMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF 83 +M+GIE AR E P + ++ ++G+ Sbjct: 61 QMNGIETARYIKEHFPSVHMLILSGY 86 >gi|154482564|ref|ZP_02025012.1| hypothetical protein EUBVEN_00231 [Eubacterium ventriosum ATCC 27560] gi|149736589|gb|EDM52475.1| hypothetical protein EUBVEN_00231 [Eubacterium ventriosum ATCC 27560] Length = 227 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 12/120 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD+ + + L KAGY NG A + + + F L L DI++PE+DG E Sbjct: 14 EILVAEDDEMIANLIKINLVKAGYLCTCAYNGKDAANLLDSKHFDLCLFDIMLPEIDGYE 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L A + D+ +FIT A+ N K + ++KPF + +++ V +L Sbjct: 74 LLEYAKSM--DIPSIFIT-----AMGTTDNKVKGLRAGADDYIAKPFEVVEMLARVESVL 126 >gi|146280759|ref|YP_001170912.1| mutant NtrC-like activator [Pseudomonas stutzeri A1501] gi|145568964|gb|ABP78070.1| mutant NtrC-like activator [Pseudomonas stutzeri A1501] gi|327479027|gb|AEA82337.1| mutant NtrC-like activator [Pseudomonas stutzeri DSM 4166] Length = 462 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++LL EDDD +R+ L++ L G +V + + A + +L+++D+ +P D Sbjct: 5 VQERVLLVEDDDSLRQLLVEELEDRGLQVRALASAEEAVGSLESWEPALVVSDLRLPGAD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L RR + + IT F ++ + + L+KP L V R L Sbjct: 65 GMALLRRVKSMQAAPAFLVITAFGSIQQAVAALKEGADEFLTKPLDLEHFALAVGRALET 124 Query: 121 K 121 + Sbjct: 125 R 125 >gi|124516315|gb|EAY57823.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Leptospirillum rubarum] Length = 489 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 1/107 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ +M L ++L + G+ V NG A + ++E P+ +++D+ MPE DG Sbjct: 8 VLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALTRFKQEGPYQWVISDLRMPEGDGWS 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L ++ P +V+ +T F V D+ + KPF +L Sbjct: 68 LLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEEL 114 >gi|119484282|ref|ZP_01618899.1| CheY subfamily protein [Lyngbya sp. PCC 8106] gi|119457756|gb|EAW38879.1| CheY subfamily protein [Lyngbya sp. PCC 8106] Length = 242 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED R + L G V+ +G A +K++ L+L D+VMP +DG + Sbjct: 4 ILIVEDSHTQRECISYQLAWNGMNVIQACDGIDALNKLQATCPDLILLDVVMPRIDGYRV 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +A ++ V+FITG L +SKP+ R+L+ + R+L Sbjct: 64 CRLIKANPKTQNIPVVFITG-KEQHLAIYEGIKHAEAYVSKPWKTRELLQTIKRVL 118 >gi|90410096|ref|ZP_01218113.1| hypothetical sensor histidine kinase/response regulator LuxN [Photobacterium profundum 3TCK] gi|90329449|gb|EAS45706.1| hypothetical sensor histidine kinase/response regulator LuxN [Photobacterium profundum 3TCK] Length = 682 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D + +R+ L K G++V+ G A + + +P L+L DI MPE+DGI Sbjct: 564 RTIMVVDDSESLRKLTAVLLEKQGFDVIQFGGGKQAIEALNTDPVDLILMDIEMPELDGI 623 Query: 63 ELAR 66 E +R Sbjct: 624 EASR 627 >gi|71906364|ref|YP_283951.1| response regulator receiver [Dechloromonas aromatica RCB] gi|71845985|gb|AAZ45481.1| Response regulator receiver [Dechloromonas aromatica RCB] Length = 121 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L +D +R+ + L AGY+VV +G +K + + +L+LTD MP MD Sbjct: 1 MAKTVLAVDDSASIRQMVSFTLKSAGYDVVEAVDGMDGLEKAKTKSVNLILTDQNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + R ++ +T ++ A+ A L KPF + L+ V +++ Sbjct: 61 GLTLIKNLRGLPQYASTPILMLTTESSDAMKSQGRAAGATGWLVKPFDPQKLIEVVRKVI 120 >gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ + +L + L +AG+ V G A E + LL+ D++MP +DG E Sbjct: 2 KLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ V+F+T V L KPF +L+ V LL Sbjct: 62 VLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLL 116 >gi|330720792|gb|EGG99006.1| Type IV fimbriae expression regulatory protein PilR [gamma proteobacterium IMCC2047] Length = 462 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q L+ +D+ + L L + G + N+ ASAY + E+ F L LTD+ +P+ Sbjct: 1 MTQTALIIDDEPAILELLAITLLRMGIDTRQANSLASAYQLLSEQAFDLCLTDMHLPDGS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +EL + P+ + IT F ++ ++ +SKP L L + V + L + Sbjct: 61 SLELVAHIQQAHPNTPIAVITAFGSIDTAIEALKLGAFDFVSKPVELPRLRDMVKQALKL 120 Query: 121 KN 122 +N Sbjct: 121 QN 122 >gi|320353227|ref|YP_004194566.1| histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121729|gb|ADW17275.1| histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 575 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ ILL +D+ + L + GY+V + A + R + LL+ D+ MP+M Sbjct: 455 SEHILLVDDEKSIADVTTSMLERLGYKVTVRISSYDALEAFRNLADRIDLLIADLTMPQM 514 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R ++ P++KV+ TGF+ + S A L KP + DL V +L Sbjct: 515 TGLQLYREIKKIRPEVKVIICTGFSEQLDSRKSRAIGIEGFLHKPVVMADLARCVRTVL 573 >gi|299768881|ref|YP_003730907.1| chemotaxis protein histidine kinase [Acinetobacter sp. DR1] gi|298698969|gb|ADI89534.1| chemotaxis protein histidine kinase [Acinetobacter sp. DR1] Length = 1500 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ L+L DI MP MDG E+ Sbjct: 1377 IMIVDDSVTVRKVTTRLLERQGYDVVTAKDGIDAIEQLENIKPDLMLLDIEMPRMDGFEV 1436 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R +L + V+ IT + A + + KPF DL++ ++ T + Sbjct: 1437 LNLVRHHDLHQHMPVIMITSRTGEKHRERAFALGVNQYMGKPFQEEDLLHNIDAFFTTR 1495 >gi|256830415|ref|YP_003159143.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256579591|gb|ACU90727.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 120 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I+ +D +R+ + L AGY V+ +G A K+ P SL+LTD+ MP M+ Sbjct: 1 MSTIIMTVDDSASIRQMVSLTLKDAGYAVIEACDGRDALSKL-SGPVSLILTDLNMPGMN 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RAT ++ +T + + + A + KPF L+ +LL Sbjct: 60 GIELIRAVRATPQYKFTPIVMLTTESQASSKEEGKAAGATGWIVKPFKPDQLLAVAKKLL 119 >gi|182679656|ref|YP_001833802.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635539|gb|ACB96313.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 231 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 15/125 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +G++A D ++ P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEGEGYRVQTYTDGSTALDGLKTSPADLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDIPVIFLTSKDDEIDELFGLKMGADD-------FIKKPFSQRLLVERVKAI 115 Query: 118 LTIKN 122 L N Sbjct: 116 LRRAN 120 >gi|171915231|ref|ZP_02930701.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 677 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 + +L+ +D+ +R + L GY+V+ +GA A E + +L+LTD++MP MD Sbjct: 558 ETVLVVDDEAAIRMITRQTLEAFGYKVILACDGAEAVTTYVEHRQQIALVLTDMMMPVMD 617 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + T+++P +K++ ++G +A + + L KP+ + L+ V ++ + Sbjct: 618 GEATIKVLTKMNPAIKIVAVSGVSASDVTAKAAGASVKTFLPKPYTAQTLLKVVKDVIAL 677 >gi|156139585|gb|ABU51090.1| unknown [uncultured bacterium Bio3] Length = 335 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 13/122 (10%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++LLAEDDD +R L ++L + G+EVV+ N A ++ E F +LL+D+ MP Sbjct: 59 MNRLRVLLAEDDDVVRGILQRSLERDGFEVVTAINVGEALSRIAAERFDVLLSDLHMPNA 118 Query: 60 DG--------IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G RA L T +A+ L PD + K+ ++ S LR+++ Sbjct: 119 GGGLTVISAMCNSQPRAVTLVVSRAQALGTAVSAMLLQPDEASVKSVEIGS----LREII 174 Query: 112 NE 113 ++ Sbjct: 175 HK 176 >gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ D+ + L + L Y V SC +G +A D + + +++ DI+MP+ DG+ Sbjct: 2 RILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + + V+ +T +V L KPF +L+ + LL Sbjct: 62 VLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLL 116 >gi|307826292|ref|ZP_07656499.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307732648|gb|EFO03518.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 229 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ ED D +R ++AL G+ V N + D+V P L++ D+ +P DGI L Sbjct: 7 IVVVEDHDALREVTVEALSNMGHNAVGANCAEALNDEVGAFPIDLMVIDLNLPGEDGISL 66 Query: 65 ARRATELDPDLKVMFIT 81 ARR P + ++ +T Sbjct: 67 ARRLRAAQPGIGIIMVT 83 >gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter turicensis z3032] gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032] Length = 703 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 582 ILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 641 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R EL L V+ +T A LSKP L Sbjct: 642 TQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 684 >gi|183179350|ref|ZP_02957561.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|183012761|gb|EDT88061.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] Length = 502 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +D+D R L L + VV+ +NG A +++++PF +L D MP M+G Sbjct: 22 DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 81 Query: 62 IELARRATEL 71 IEL R L Sbjct: 82 IELLTRVKTL 91 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LL ED++ + + L G VV N+G A +++ F L+L D+ MP MDGI Sbjct: 163 QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 222 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 A +P + + I A A+ D A + LSKP + + L Sbjct: 223 S-ATEHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 281 Query: 120 IKN 122 + + Sbjct: 282 VSD 284 >gi|188579450|ref|YP_001922895.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342948|gb|ACB78360.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 740 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMP-EMDG 61 +L+ ED+ +R L GY V+ +G A + LLLTD+V+P ++ G Sbjct: 603 VLVVEDEAAVREIACAILADLGYRVLEAADGEEALQVFGQNTTAIDLLLTDVVLPGKVRG 662 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL+ R + P+++V+F++G+ ++ +++ KPF L +V +L Sbjct: 663 RELSERVRAVRPEVRVLFMSGYTENSIVHHGRLDDGVQLIGKPFKREQLARKVAEVL 719 >gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1065 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 ++++ +D+ R+ L L G EV NG A VR+E PF L++ DI+MP M G Sbjct: 694 RVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMSGY 753 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ R + L ++F+T +A + L+KPF R+L++ L+T+ Sbjct: 754 DVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPFDKRELISRAKNLITL 813 Query: 121 K 121 K Sbjct: 814 K 814 >gi|270308765|ref|YP_003330823.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] gi|270154657|gb|ACZ62495.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] Length = 1092 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R + L + G+ V C++ A DK+ ++++L DI MP M GIEL Sbjct: 973 ILVVDDEHAIRLLIRTILSQNGHTVEECDDPRKALDKIISADYNVILLDIRMPGMSGIEL 1032 Query: 65 ARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 P L V+FITG + +SKPF + L V +L K Sbjct: 1033 FNNILVKKPVLSQSVIFITGDTSDEATKTYLEAHQTPYISKPFSRKTLETAVGEILGKK 1091 >gi|153877488|ref|ZP_02004256.1| response regulator receiver domain protein [Beggiatoa sp. PS] gi|152066048|gb|EDN65744.1| response regulator receiver domain protein [Beggiatoa sp. PS] Length = 124 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D R L + AG+ V++ ++GA A +K E ++ D+VM +MDG + Sbjct: 8 KVLVVDDSTIDRMNLQNIISDAGHTVITASSGAEAIEKANAEKPDIIFMDVVMQQMDGYQ 67 Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R T E ++ V+F+T A + ++ KP+ +V ++N+ Sbjct: 68 ACREITHNESTKNIPVIFVTSKGQKADRMWAEMQGGKGLIQKPYTPEQIVEQINQF 123 >gi|89109034|ref|AP_002814.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. W3110] gi|85675315|dbj|BAA16001.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K12 substr. W3110] Length = 124 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 2 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 61 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 62 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 104 >gi|78776824|ref|YP_393139.1| two component transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78497364|gb|ABB43904.1| two component transcriptional regulator, winged helix family [Sulfurimonas denitrificans DSM 1251] Length = 217 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 51/109 (46%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL EDD LI L + EVV NG +A D+ +E F+L L DI +P +DG+ Sbjct: 2 SKILFLEDDLLFAETLIDLLEENNMEVVHVPNGQAALDRTFKEKFNLYLLDINVPLVDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R E D D +F+T + ++KPF +L+ Sbjct: 62 TLLRELRESDDDTPAIFLTSHKEKEVLKKGFLCGADDFITKPFDADELI 110 >gi|39656353|gb|AAR29899.1| putative histidine kinase NIK1p [Cochliobolus heterostrophus] Length = 1239 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ ++ L K + V NNG A++ ++++ + +L D+ MP M G E Sbjct: 1120 QILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFE 1179 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + E + P V+ +T A V A + LSKP L+ + R Sbjct: 1180 ATAKIREWERENGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1237 >gi|109898568|ref|YP_661823.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700849|gb|ABG40769.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 240 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 54/113 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD D+ ++ L + +NG + + + +++ DI MP+MDGI L Sbjct: 21 VLLVEDDIDLASTVVDYLELESMQCDHASNGLMGLHLIERQSYQVIILDINMPKMDGITL 80 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +R EL D V+ +T + + + L KPF +++LV + L Sbjct: 81 CKRMRELGIDTPVLMLTARDTLDNKLEGFQAGSDDYLVKPFAMQELVARIQVL 133 >gi|298481127|ref|ZP_06999321.1| LOW QUALITY PROTEIN: two-component system response regulator [Bacteroides sp. D22] gi|298272701|gb|EFI14268.1| LOW QUALITY PROTEIN: two-component system response regulator [Bacteroides sp. D22] Length = 58 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 39/56 (69%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 KILL ED+ ++ F+ + L + G+ V C++G + + +++EPF LL+ DI+MP++ Sbjct: 3 KILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEPFDLLILDIIMPKI 58 >gi|283850434|ref|ZP_06367723.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] gi|283574460|gb|EFC22431.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] Length = 141 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 + +LL +D++++R L L G V++ +G A + VR +P ++ + D+ MP ++G Sbjct: 2 KTVLLVDDEENLRFALSSWLTGQGLSVLTAASGEEALEIVRGDPAVAVAVLDVNMPGLNG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IE L P+L+ + +TG+ V + ++ LSKP + L+ V + L+ Sbjct: 62 IETLAALKALRPELESIIVTGYPTVEYALEGQRLGASEYLSKPCDIHLLLEVVRKALS 119 >gi|297570474|ref|YP_003691818.1| response regulator receiver modulated chemotaxis protein CheW [Desulfurivibrio alkaliphilus AHT2] gi|296926389|gb|ADH87199.1| response regulator receiver modulated CheW protein [Desulfurivibrio alkaliphilus AHT2] Length = 645 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 14/113 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59 N KILL ED MR+ K LG+ G+ +V +G A +K++ ++ L+++D MP M Sbjct: 6 NIKILLVEDAGTMRKMEAKILGQVGFNNIVEAVDGQDAVEKLQADQDIGLVISDWSMPNM 65 Query: 60 DGIELAR--RATELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPF 105 DG+EL + R+ E D+ + TG + A AL ++ V++KPF Sbjct: 66 DGLELVQWLRSQEQLKDIPFLMATGHGDKEYVAKALEGGASG-----VVAKPF 113 >gi|268679089|ref|YP_003303520.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268617120|gb|ACZ11485.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 224 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L AED+ +R+ + + LG +V ++G AY E L++TDI MP + G Sbjct: 11 NYRVLYAEDEAGVRKNVYELLGLLFKDVYLAHDGEEAYRLFEEHKPDLVITDIKMPRLSG 70 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 IEL ++ + D +++ IT + V Sbjct: 71 IELVKKIRQNDAHAQIIIITAYTEV 95 >gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 211 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L K +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTKEEFEIIGEAENGEEALAFVQKERPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRLKQQDATIKILMLSSFS 86 >gi|187779051|ref|ZP_02995524.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC 15579] gi|187772676|gb|EDU36478.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC 15579] Length = 234 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY+ +G A +K + E + +++ D++MP MDGIE Sbjct: 5 KILIVEDDININNMIKESLIKEGYDAGQAFHGLEAVEKFQGEEWHMVIMDVMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 AMRRIRE 71 >gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 226 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GY+V+ +NG + + L++ D+++PE++G+E Sbjct: 3 KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR ++ ++ ++ +T AV ++KPF + +L+ + R+ Sbjct: 63 VLRRIRKV-SEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|153006793|ref|YP_001381118.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152030366|gb|ABS28134.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 128 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+ D+R + + L GY V +GA A K R +++L D++MP M+G E Sbjct: 3 SVLVVDDESDIREAVSEVLADEGYVVHGAGDGAEALRKARAVHPNIVLLDLMMPGMNGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R A + DP+L + + +A+ +A A+ + KPF L +L++ V + Sbjct: 63 F-RAAQKGDPELSDIPVVVLSALGRVAGMDA---ARFIQKPFDLDELLDAVRQ 111 >gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] Length = 456 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+ +D D L L GY+V ++G +A V E+ L+L DI MPEMD Sbjct: 8 LKTNILVVDDYLDNLTLLTIILNNLGYQVRQADSGKTALKAVEEKLPDLILLDIQMPEMD 67 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + +A D+ ++F++ F ++KPF L +++ V + L Sbjct: 68 GYSCCQQLKANPKTKDIPIIFLSAFNNAVDKVKGFEVGGEDYITKPFLLEEVIARVEKQL 127 Query: 119 TIK 121 +K Sbjct: 128 ILK 130 >gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614] gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family [Nocardioides sp. JS614] Length = 228 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-VREEPFSLLLTDIVMPEMDGI 62 +IL+AEDD + L ++L +AG++V ++G SAY++ + + + L D ++P +DG+ Sbjct: 2 RILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +ARR +L L ++ +T V L KPF L +L+ + L Sbjct: 62 TVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRAL 116 >gi|325123326|gb|ADY82849.1| component of chemotactic signal transduction system [Acinetobacter calcoaceticus PHEA-2] Length = 1501 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ L+L DI MP MDG E+ Sbjct: 1378 IMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEV 1437 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L D+ V+ IT + + + KPF DL++ ++ L Sbjct: 1438 LNLVRHHDLHQDMPVIMITSRTGEKHRERAFTLGVNQYMGKPFQEEDLLHNIDALF 1493 >gi|319764391|ref|YP_004128328.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826612|ref|YP_004389915.1| response regulator receiver protein [Alicycliphilus denitrificans K601] gi|317118952|gb|ADV01441.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329311984|gb|AEB86399.1| response regulator receiver protein [Alicycliphilus denitrificans K601] Length = 128 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EM 59 M+++IL+ ED D+R+ + L Y++ N D +R L+L DI+MP EM Sbjct: 1 MSKRILIVEDHADIRKLIRMTLEFEYYDIHEAANAQEGLDAIRRLHPQLVLLDIMMPGEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 DG++L + DP L + + A N D A NA L KPF L+ ++ Sbjct: 61 DGLDLCQMVKN-DPSLGLPQVVLLTARGQNKDIEAGMNAGADAYLLKPFSPLQLITTIDS 119 Query: 117 L 117 L Sbjct: 120 L 120 >gi|293409372|ref|ZP_06652948.1| TMAO reductase system sensor TorS [Escherichia coli B354] gi|291469840|gb|EFF12324.1| TMAO reductase system sensor TorS [Escherichia coli B354] Length = 904 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 220 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ ++R L L AGYEV +G A E+PF L++ DI++P+ DG Sbjct: 2 KKILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIMLPKKDGW 61 Query: 63 ELARRATELDPDLKVMFITG 82 + R E + V+ IT Sbjct: 62 SICREIKEY-SSVPVIIITA 80 >gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] Length = 224 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED +M L+K L A Y V SC G A D + + ++ DI++P +DG+E Sbjct: 2 RILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIMLPGVDGLE 61 Query: 64 LARRATELDPDLKVMFIT---GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR V+ +T G DS A L KPF L++L+ + L+ Sbjct: 62 VLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGAD---DYLVKPFALQELLARLRVLI 116 >gi|254512289|ref|ZP_05124356.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Rhodobacteraceae bacterium KLH11] gi|221536000|gb|EEE38988.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Rhodobacteraceae bacterium KLH11] Length = 444 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 55/103 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + ++ A + + ++++DI MP MDGI+ Sbjct: 6 KIAIVDDEQDMRQSISQWLALSGYDTETFSSAEDALKVLGPDYPGIVISDIKMPGMDGIQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 L ++ D L V+ ITG V + ++ L KPF+ Sbjct: 66 LLKKLMGADSTLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFN 108 >gi|160894798|ref|ZP_02075572.1| hypothetical protein CLOL250_02348 [Clostridium sp. L2-50] gi|156863229|gb|EDO56660.1| hypothetical protein CLOL250_02348 [Clostridium sp. L2-50] Length = 505 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 4 KILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ +D+ R RFL+K L +E+ NG A +K+ +E F +LLTD+ MP MD Sbjct: 3 KILIVDDEKIERNGIRFLLKKLN-LEFEIAEAVNGVDALEKLEKEDFDILLTDVKMPFMD 61 Query: 61 GIELARRATELDPDLKVMFITG 82 GIEL + L+ + +G Sbjct: 62 GIELIDHVVKEKKKLRTVIFSG 83 >gi|149277598|ref|ZP_01883739.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149231831|gb|EDM37209.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 1363 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+ ED+ ++R FLI+ + K Y + NG +A +++ SL+++D++MP+MDG+ Sbjct: 1106 QSVLIVEDEPELR-FLIRNVLKEHYIIYEAGNGRAALQFLQKTVPSLIISDVMMPDMDGL 1164 Query: 63 ELARRATELDPDLKVMFI 80 EL R + ++ F+ Sbjct: 1165 ELCRAVKQTPALAQIPFV 1182 >gi|153003833|ref|YP_001378158.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027406|gb|ABS25174.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 466 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 52/106 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +DD R+ L G+EV+ + GA A ++ E +++D+ MP+MDGI L Sbjct: 12 VLLVDDDPGTRKVAKANLSLEGFEVLVASCGAEALARLGESDPLAVVSDLKMPDMDGIAL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R L P L V+ +T A V ++ L+KP +L Sbjct: 72 MDRVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPIRYDEL 117 >gi|73539421|ref|YP_299788.1| response regulator receiver [Ralstonia eutropha JMP134] gi|72122758|gb|AAZ64944.1| Response regulator receiver [Ralstonia eutropha JMP134] Length = 125 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D +RR + L GY V +G A + F +LLTD VMP MDG+ Sbjct: 8 SILVVDDSPSLRRMIAACLRAGGYAVTEAADGDQAQALAAQASFDMLLTDQVMPGMDGLT 67 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L R RATE + ++ +T A + + + L KPF L+ V L Sbjct: 68 LIRHLRATERYAGIPILMLTTEADDRIREQAREAGASGFLPKPFDPDQLMAAVAEL 123 >gi|46578557|ref|YP_009365.1| response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120603865|ref|YP_968265.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|46447968|gb|AAS94624.1| response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120564094|gb|ABM29838.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|311232482|gb|ADP85336.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1] Length = 137 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +LL +D+D + + + GY+V + +GA A +RE F + D+ M +MDG Sbjct: 7 GRSLLLIDDEDGFLAVMRRRFERRGYDVATAGSGAEALRLLRERRFEAAVLDLKMGDMDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL R + P++ V+ +TG + A L KP LV ++ LT Sbjct: 67 FELLRIFRRMAPEMPVVMLTGHGGETEAAEGLRLGAAGYLLKPCDFEALVECLDGALT 124 >gi|20090860|ref|NP_616935.1| response regulator receiver [Methanosarcina acetivorans C2A] gi|19915932|gb|AAM05415.1| response regulator receiver [Methanosarcina acetivorans C2A] Length = 124 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62 K+L+AED+ +L L + GYE +S +G A++ + E F +++ D MP+M GI Sbjct: 2 KVLIAEDEPISNLWLKNTLTRWGYEAISTRDGYEAWEVLNESDFPRVVILDWEMPKMKGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 E+ + + DP L ++I L D A A L KPF R L +++ Sbjct: 62 EVCEKIKK-DPRLSSIYIILITGRDLTEDMEAGFKAGADDYLKKPFDNRKLKTKLD 116 >gi|67925032|ref|ZP_00518414.1| Response regulator receiver:ATP-binding region, ATPase-like [Crocosphaera watsonii WH 8501] gi|67853126|gb|EAM48503.1| Response regulator receiver:ATP-binding region, ATPase-like [Crocosphaera watsonii WH 8501] Length = 308 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED D + ++K L G+EV S NNG A + ++ L+ D+ MP MDG E Sbjct: 92 RILVVEDVKDNQLLMMKILSSVGFEVRSANNGQEALEMWQKWHPQLIWMDMRMPVMDGYE 151 Query: 64 LARRATELD---PDLKV-MFITGFAAVALNPDSNA 94 +RR +L+ P+ + + I A A + + A Sbjct: 152 ASRRIRQLEAENPNRQTPVIIIALTATAFDEERKA 186 >gi|332186175|ref|ZP_08387921.1| sensory box protein [Sphingomonas sp. S17] gi|332013990|gb|EGI56049.1| sensory box protein [Sphingomonas sp. S17] Length = 524 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MD 60 +++L+ ED +D+ L GY+VV + A D + + F LL TDI+MP M+ Sbjct: 403 ERVLMVEDQEDVGDLGRSMLEDLGYDVVLTRSAREALDYLAGDSDFQLLFTDILMPGGMN 462 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LA+ P L V+ TGFA A++ ++ +++ KP+ DL + +L Sbjct: 463 GVALAQAVRRDYPRLSVLLTTGFADEAID---EGARSYELIRKPYRRADLNERIRAVL 517 >gi|309790734|ref|ZP_07685283.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227225|gb|EFO80904.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 871 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ + + L + G +G +A D V +P+ ++L D+ MPE+DG E Sbjct: 616 RVLIAEDNPINQTVTLHLLERLGCRADVVEDGIAAIDAVANQPYDVVLMDMQMPELDGDE 675 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 +R E +K +I A A D A + L+KP L DL Sbjct: 676 ASRAIREYGSRIKQPYIIALTAQARADDRELAIAAGMNDYLTKPAQLEDL 725 >gi|300690960|ref|YP_003751955.1| transcriptional response regulator, C4-dicarboxylate transport response regulator [Ralstonia solanacearum PSI07] gi|299078020|emb|CBJ50662.1| transcriptional response regulator, C4-dicarboxylate transport response regulator [Ralstonia solanacearum PSI07] Length = 442 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL-------LLTDIVM 56 ++++ ED+DD+R ++AL G V YD V P +L +++DI + Sbjct: 8 EVMVIEDEDDVRLGCLQALQLEGLRAV-------GYDSVERVPRTLPRDVRYVVVSDIRL 60 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P MDG+ R+ E D DL V+ ITG V + + KPF +L V R Sbjct: 61 PGMDGMAFLRQLVERDADLPVILITGHGDVQTAVQAMRDGAYDFIQKPFQSHELAAVVKR 120 Query: 117 LL 118 L Sbjct: 121 AL 122 >gi|300694056|ref|YP_003750029.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum PSI07] gi|299076093|emb|CBJ35404.1| putative two-component response regulator transcription regulator protein [Ralstonia solanacearum PSI07] Length = 227 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL EDD R L + L + G+EV ++ A+ + P L++ D ++P DGI Sbjct: 2 HILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEAHTSLLATPH-LVILDWMLPGKDGIA 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPF 105 + R E DP L ++ +T A A D A N L+KPF Sbjct: 61 VCRELRERDPQLPILMLTARDATA---DRIAGLNTGADDYLTKPF 102 >gi|298528407|ref|ZP_07015811.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512059|gb|EFI35961.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] Length = 127 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N +IL+ +D MRR + L + GY +V ++G +A++ + ++ +++D MP+M Sbjct: 6 NIRILVVDDFSTMRRIIKNILRQLGYNNIVEADDGTTAWEILNKDKIDFIVSDWNMPKMT 65 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R R++E DL + +T A ++ K + + KPF + ++ ++ Sbjct: 66 GIELLRKVRSSEEFSDLPFLMVTAEAQQENIIEAVQAKVSNYIVKPFTADTMSQKIEKIF 125 >gi|219851953|ref|YP_002466385.1| CheA signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219546212|gb|ACL16662.1| CheA signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 777 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED R L L AGY V + +G A++ + F L+++D+ MP M G +L Sbjct: 659 ILVAEDSITSRTLLKNILESAGYRVTTAVDGQDAWNVLISGAFDLVVSDVDMPRMSGFDL 718 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRL 117 R R+ + DL V+ +T + NA ++ F +L+ ++RL Sbjct: 719 TRKIRSDQRHADLPVVLVTSLDSAGDREQGIEVGANAYIVKSSFDQSNLIEIIDRL 774 >gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R L L GY V + G A + + E +L++ DI+MP+MD Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMD 60 Query: 61 GIELARRATE 70 G+E+ +RA E Sbjct: 61 GLEVCKRARE 70 >gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 19/127 (14%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD + + L K GY+VV +G +A + ++ + L++ DI+MP+MDG E+ Sbjct: 6 ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN-- 115 R+ ++ ++F++ + L D ++KPF +LV VN Sbjct: 66 TRQ-IRTKQNMPIIFLSAKTSDFDKVTGLVLGADD-------YMTKPFTPIELVARVNAQ 117 Query: 116 --RLLTI 120 R LT+ Sbjct: 118 LRRFLTL 124 >gi|146343749|ref|YP_001208797.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146196555|emb|CAL80582.1| Sensor histidine kinase with HAMP, PAS and Response regulator receiver domains [Bradyrhizobium sp. ORS278] Length = 1202 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EM 59 ++ IL+ EDD +R +++ L GY + N A A EPF LL TDI+MP M Sbjct: 1079 HETILVVEDDRLVRGYVLAQLHALGYATLEAANAAEALAITNAGEPFELLFTDIIMPGTM 1138 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G +LA + P +V+F +G+ A+ + +L KP+ +L V + L Sbjct: 1139 NGRQLASEVQRIRPGQRVLFTSGYTENAIVHHGRLDEGLLLLPKPYRKSELAKMVRKAL 1197 >gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1] gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 1616 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 40/68 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+D ++ + LG AG++V ++GA A KVR + ++L D+ MP MDG+ Sbjct: 1280 RILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVLMDMQMPVMDGVA 1339 Query: 64 LARRATEL 71 R L Sbjct: 1340 ATREIRRL 1347 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMP 57 +++L+ +D+D+ R L + ++V + +G A D+V+ P+ ++L D MP Sbjct: 1130 RRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMP 1189 Query: 58 EMDGIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MDGIE A A LDP +++ +T + + VL KP L + + Sbjct: 1190 GMDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFDTIM 1249 Query: 116 RLL 118 RL Sbjct: 1250 RLF 1252 >gi|51246965|ref|YP_066849.1| Ntr family two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50878002|emb|CAG37842.1| related to two-component system sensory/regulatory protein (Ntr family) [Desulfotalea psychrophila LSv54] Length = 711 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++L +D+ + + + L GY+ + A + E P + L++TD+ MP M Sbjct: 584 ERVLFVDDEQILAQMAGQMLTYLGYKPTVFTDSRVALEHFAENPDNYDLVITDLTMPFMS 643 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+EL+RR EL ++ V+ TG++++ ++ A A ++ KP + L Sbjct: 644 GLELSRRVKELGSEVPVILHTGYSSMVDVGEARAMGIAAIMIKPLTMSKL 693 >gi|326801454|ref|YP_004319273.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326552218|gb|ADZ80603.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 230 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 13/127 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ + + + ++L +G+ V+ +G AY R ++ + DI+MP DG Sbjct: 5 KILIAEDEPFLGKIVKESLELSGFNVILVQDGVKAYATFRAWQPTVCIFDIMMPVKDGFS 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L +D + ++F+T A +L D K ++ L KPF + +L+ +N LL Sbjct: 65 LIEDVRRIDQQVPIIFLT---AKSLTND--VVKGFELGCNDYLKKPFSMEELIVRINALL 119 Query: 119 ---TIKN 122 +IKN Sbjct: 120 SRPSIKN 126 >gi|303248034|ref|ZP_07334300.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio fructosovorans JJ] gi|302490591|gb|EFL50496.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio fructosovorans JJ] Length = 584 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+A+D+ +R L + K G+ V++ NG SA + +E +++TDI MPEMDG Sbjct: 256 HNKILVADDNKLIRELLRHSFIKGGHCVLTAENGKSALELAKEHLPDVVVTDIEMPEMDG 315 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNRLL 118 L + + +PDL+ + + D + ++ KPF + + V +LL Sbjct: 316 YTLCEKLRD-EPDLRNTLVVMMSGRDRQSDILRGERLGISRYFVKPFDVEKMQLVVEQLL 374 Query: 119 T 119 T Sbjct: 375 T 375 >gi|288800698|ref|ZP_06406155.1| response regulator [Prevotella sp. oral taxon 299 str. F0039] gi|288332159|gb|EFC70640.1| response regulator [Prevotella sp. oral taxon 299 str. F0039] Length = 517 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 1/112 (0%) Query: 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN +LL DD+ ++ + + L + GYEV++ +NG ++ ++ F L+L D +MP + Sbjct: 1 MNNGLLLWIDDEIELLKAHVLFLKQKGYEVITVSNGFDGIEQCKQHSFDLILLDEMMPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E ++ E+ P V+ +T + + K A L KP H ++ Sbjct: 61 TGLETLQQIKEITPSTPVVMLTKSEEEDIMNQAIGSKIADYLIKPVHPNQII 112 >gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 227 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 11/121 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I+L ED+ ++ + + L AG+EV ++G AY + ++ SL++ D+++P MDG+ Sbjct: 2 KHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ E DL ++ +T + LN ++ + KPF ++LV V + Sbjct: 62 TICRKVRE-QSDLPIIMVTARTEEIDRVLGLNMGAD-----DYICKPFSPKELVARVQAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 23/132 (17%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+MDG Sbjct: 3 NISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIMMPKMDG 62 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 E+ R RA P ++F++ + L D ++KPF +LV Sbjct: 63 YEVTRQIRAKHHMP---IIFLSAKTSDFDKVTGLVLGADD-------YMTKPFTPIELVA 112 Query: 113 EVN----RLLTI 120 VN R LT+ Sbjct: 113 RVNAQLRRFLTL 124 >gi|224825617|ref|ZP_03698722.1| PAS/PAC sensor hybrid histidine kinase [Lutiella nitroferrum 2002] gi|224602538|gb|EEG08716.1| PAS/PAC sensor hybrid histidine kinase [Lutiella nitroferrum 2002] Length = 720 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 11/112 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDGI 62 +LL ED+ ++R+ + L GY V+ +NG A + + E + +++D+VMP + G Sbjct: 606 VLLVEDEAEVRKIIRMQLVDLGYAVLEADNGVEALAMIEQVEEIACVISDVVMPGGVSGW 665 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV----LSKPFHLRDL 110 +LA RA L P L V+ I+G A DS A A++ L KPF L Sbjct: 666 QLAERARRLRPGLHVVLISGNAQ-----DSAAGLAAELGIDPLYKPFSKEQL 712 >gi|218246085|ref|YP_002371456.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|257059134|ref|YP_003137022.1| response regulator receiver protein [Cyanothece sp. PCC 8802] gi|218166563|gb|ACK65300.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|256589300|gb|ACV00187.1| response regulator receiver protein [Cyanothece sp. PCC 8802] Length = 122 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D R + L G+ V++ +G A +KV+E F L++ D+VMP+++G + Sbjct: 4 ILVTDDSTAQRELIAGLLVDNGFSVITAIDGEQALEKVQETLFDLIILDVVMPKLNGFQT 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 R+ E DP + + + + + D K + + KPF +L+ +V +LL Sbjct: 64 CRKLKE-DPKTQNIPVILCSTKNTDVDRYWAKKQGANEYIVKPFSPNELIEKVQQLL 119 >gi|163748872|ref|ZP_02156124.1| sigma-54 dependent response regulator [Shewanella benthica KT99] gi|161331646|gb|EDQ02451.1| sigma-54 dependent response regulator [Shewanella benthica KT99] Length = 476 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V +++R F LL+ DI +P GIE Sbjct: 33 VLIVDDEPGMRSFLKKALSKK-FALVETAASVEDAEQLRSRCHFDLLIVDIRLPGRSGIE 91 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D ++F+TG+A + + + A + KPFHL ++ V+R + Sbjct: 92 WHEALDDRDRRSDIIFMTGYADMDVAIRALRAGAADFIMKPFHLEQMMKAVDRCI 146 >gi|197121034|ref|YP_002132985.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196170883|gb|ACG71856.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 135 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D D +RR + AL + G+ VS + A A R P L L D MP MDG Sbjct: 3 QVLIVDDTDIVRRAIELALRRMGHVAVSTCDAAEALVLARRNPPDLALLDFRMPGMDGAT 62 Query: 64 LAR--RATELDPDLKVMFITGFAA--VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + RAT + +V+F++ VA + AP A + KPFHL DLV V L Sbjct: 63 LFQELRATLGERCPRVLFVSASPPDEVAREVERIAPA-AGYVRKPFHLDDLVRAVAEAL 120 >gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] Length = 246 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 13/123 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMPEMD 60 ++L+ EDDD +R + +AL G+ V SC+NGA A + +EP L++ D+++P + Sbjct: 17 RLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLG 76 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G+++ R+ + ++ I+ A + +++ +V L KPF +R+LV Sbjct: 77 GLDVCRQLRGNNITTPILVIS-----ARDSETDRVLGLEVGADDYLVKPFGMRELVARCR 131 Query: 116 RLL 118 LL Sbjct: 132 ALL 134 >gi|118581451|ref|YP_902701.1| response regulator receiver modulated metal dependent phosphohydrolase [Pelobacter propionicus DSM 2379] gi|118504161|gb|ABL00644.1| response regulator receiver modulated metal dependent phosphohydrolase [Pelobacter propionicus DSM 2379] Length = 365 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 6/115 (5%) Query: 11 DDDMRRFLIKA----LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66 DDD R+++++ L ++G+ V S ++G A + EP L+LTDI MP M GIEL Sbjct: 13 DDD--RYVLESVSILLRESGFSVTSFSSGHDAIRQFVTEPVDLILTDINMPGMTGIELLE 70 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + LD + V+ +T +A + + + KP+ L++ V + LT K Sbjct: 71 KIRYLDRETPVLLMTAYADLDTAVRAIQKGAFDFIIKPYRPPYLIHAVEKGLTYK 125 >gi|322515747|ref|ZP_08068706.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Actinobacillus ureae ATCC 25976] gi|322118163|gb|EFX90488.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Actinobacillus ureae ATCC 25976] Length = 96 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 46/87 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +LL +DD D+ + L Y ++ NN +A +++ E+ ++++DI MP+M G Sbjct: 4 NYTVLLIDDDQDVLQAYQSLLELESYRTIAVNNPVTALEQISEDWQGIVVSDIYMPQMPG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVAL 88 +L + D L V+ ITG V + Sbjct: 64 WQLLEQIHAKDKQLPVILITGHGDVPM 90 >gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 229 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD + L GY V++ ++G +A +++E L++TDI+MP M+ Sbjct: 1 MALKILVVDDDIGTSLSISDYLELCGYSVLTADDGENALSIIQQEHLDLMVTDIIMPRMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G EL RR + + + +++ + A + + L KPF L +L V L Sbjct: 61 GYELVRRVRQ-NIEFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAVRNL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15] gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15] Length = 222 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MDG + Sbjct: 3 RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 62 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + R+T D V+ IT A ++KP + +++ V LL Sbjct: 63 LLDSLRSTRFDT--PVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALL 117 >gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 +++L+ ED++D+R F++ L + G+EVV +G A ++ E+ ++L DI++P +DG Sbjct: 2 KRVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGIDG 61 Query: 62 IELARRATELDPDLKVMFIT 81 ++ ++ E + + V+ +T Sbjct: 62 YKVLKKTRENNSSIGVIMLT 81 >gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1199 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 8/122 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ + + L K G++V +G +A DK+ PF L+L DI MP MDG+ Sbjct: 930 RVLVAEDNPVNIKLMTIHLHKLGHQVAVATSGEAALDKLAHAPFDLVLMDIEMPSMDGLT 989 Query: 64 LAR--RATE------LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 AR RA + D+ ++ +T + + A + KP +L +L + + Sbjct: 990 AARLIRAGGRPDLPIVAADVPIVAVTAHVSPEVREACAAAGMDAYIGKPINLEELASVIR 1049 Query: 116 RL 117 L Sbjct: 1050 SL 1051 >gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 236 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GIELARR 67 G+ + +R Sbjct: 71 GLHVLQR 77 >gi|226939039|ref|YP_002794110.1| Sensor protein [Laribacter hongkongensis HLHK9] gi|226713963|gb|ACO73101.1| Sensor protein [Laribacter hongkongensis HLHK9] Length = 380 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ +R +K L K G V NG A + R L+L D+ MPE DG++ Sbjct: 246 RVLLAEDNPVNQRLALKMLEKLGIHAVLAANGRQAVTEARRMQPDLILMDLQMPECDGLD 305 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 R L+ V I A AL D A A + L+KPF L +L Sbjct: 306 ATRAIRRLEQPQPV--IVALTANALAEDREACLAAGMDDHLAKPFTLAEL 353 >gi|220928566|ref|YP_002505475.1| AraC family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998894|gb|ACL75495.1| two component transcriptional regulator, AraC family [Clostridium cellulolyticum H10] Length = 519 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 7/85 (8%) Query: 4 KILLAEDDDDMRRFLIKA-----LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+L+ +D+ +R L LG +G SC A + ++LTDI MPE Sbjct: 3 KVLIVDDESIIRNGLYNMIPWSDLGVSGVLTASC--AKEALKIAQNTELDIMLTDICMPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGF 83 MDG+E+ + E+ PDLKV+ +TG+ Sbjct: 61 MDGLEMTKIMLEIIPDLKVIVLTGY 85 >gi|118470471|ref|YP_889241.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|118171758|gb|ABK72654.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 249 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 58/108 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + + AL G+++ + +GASA RE P +++ D+++P+M G++ Sbjct: 25 RVLVVDDEPVLAELVSMALRYEGWDITTAGDGASAIAAARETPPDVVVLDVMLPDMSGLD 84 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + R+ E P L ++ +T +V ++KPF L ++V Sbjct: 85 VLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVV 132 >gi|157371577|ref|YP_001479566.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157323341|gb|ABV42438.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 224 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KAL G+ V +G +A + E ++L++ D+ +P ++G+E Sbjct: 2 RLLLVEDHPELSHWLQKALTGVGFAVDVAPDGLAADHLLLNESYALVVLDVALPRLNGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + DL V+ +T VA L+KPF L +L + LL Sbjct: 62 LLARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALL 116 >gi|121594294|ref|YP_986190.1| signal transduction histidine kinase NtrB [Acidovorax sp. JS42] gi|120606374|gb|ABM42114.1| signal transduction histidine kinase, nitrogen specific, NtrB [Acidovorax sp. JS42] Length = 720 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 10 DDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGIELAR 66 DDD+ FL+ + L + GYEV + A D ++ P + LL+TD MP G++L R Sbjct: 606 DDDEALVFLVQRLLRRRGYEVSGFTDPHQATDALQAHPERYDLLVTDYNMPGYSGLDLVR 665 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A + DL V +G+ + + A ++ KP + +L V+RL Sbjct: 666 AARTIRSDLPVALASGYVTAEIEQAALAEGARALIHKPDDVEELCATVDRL 716 >gi|22023765|gb|AAM89215.1|AF462151_1 hybrid histidine kinase [Tritrichomonas foetus] Length = 1547 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ ED+ + + K L G + NG A D + +E F L+ D MP +DGI Sbjct: 1426 QKILVVEDNKTNQFVMKKILQNIGCPMRIAENGKEAIDALEQEEFDLIFMDCQMPVLDGI 1485 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 E + D + + I A A+ D + A + LSKP ++ + N Sbjct: 1486 EATKIIRSCDKNYSSIPIIALTASAVEGDEETCRKAGMDAYLSKPVRIQQIKN 1538 >gi|86160537|ref|YP_467322.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777048|gb|ABC83885.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 712 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D L AL AGYE+V +GA A + + +L+L D+ MPE+DG E Sbjct: 8 KILLVDDRPANLLALESALAGAGYELVKAGSGAEALRFLLRDECALILLDVNMPELDGYE 67 Query: 64 LAR--RATELDPDLKVMFITGFAA 85 AR R ++ V+FIT + A Sbjct: 68 TARLVRQNPRTRNIPVVFITAYGA 91 >gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA [Mycobacterium avium 104] gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA [Mycobacterium avium subsp. avium ATCC 25291] gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104] Length = 228 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 116 >gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472] gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 1480 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++LL EDD R L G E NG A ++V+ P ++L+L D+ MPEMDG Sbjct: 1147 RVLLVEDDAINREVAQALLQDVGLEADMAENGKIAVERVQAAPARYALILMDVQMPEMDG 1206 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +E RR LD + I A A D +A + A + ++KP L + R L Sbjct: 1207 LEATRRIRALDAGENIP-IMAMTANAFAEDRSACREAGMNDFVAKPVDPDQLFAALRRWL 1265 >gi|330447435|ref|ZP_08311084.1| arcA transcriptional dual regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491626|dbj|GAA05581.1| arcA transcriptional dual regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 239 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R L GY V N+GA + + E P L++ DI +P +G+ L Sbjct: 6 ILIVEDEHVTRNTLKSIFEAEGYTVFEANDGAEMHQMLSENPVHLVIMDINLPGKNGLLL 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 AR E D+ +MF+TG + + D ++KPF+ R+L L Sbjct: 66 ARELRE-QGDMALMFLTGRDNEVDKILGLEIGADD-------YITKPFNPRELTIRARNL 117 Query: 118 LT 119 LT Sbjct: 118 LT 119 >gi|302340016|ref|YP_003805222.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637201|gb|ADK82628.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 632 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 39/64 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+AED+ R FL L KAG+ V+ NNG A + + L+L D+ MP MDGI Sbjct: 514 RRILIAEDEMINRLFLSVLLKKAGHIVIEANNGKEAVTQAIQHKPDLILMDLSMPVMDGI 573 Query: 63 ELAR 66 E A+ Sbjct: 574 EAAK 577 >gi|219660834|gb|ACL30962.1| hybrid histidine kinase [Pisolithus tinctorius] Length = 836 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPEM 59 ILLAED+ ++ +K L K G+ V NG+ A D + +PF ++L D+ MP M Sbjct: 686 ILLAEDNMVNQKLAVKILEKYGHSVEIAENGSLAVDAFKARVQQNKPFDIILMDVSMPFM 745 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E RA E L I A A+ D A + ++KP DL+N + Sbjct: 746 GGMEATELIRAYEARVGLLRTPIVALTAHAMIGDRERCLQAGMDDHITKPLRRGDLLNSI 805 Query: 115 NRL 117 NRL Sbjct: 806 NRL 808 >gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 15/115 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A +K E P ++L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEGP-NVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI 108 >gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +D+ ++R L +L AG+EV + +G SA VR+ L++ D+++P+MDG Sbjct: 8 RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGFT 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E V+F+T ++KPF L ++V + +L Sbjct: 68 VTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVL 122 >gi|226287246|gb|EEH42759.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb18] Length = 1285 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+D +R +K L K ++V +NG A + +++ F ++L D+ MP M G E Sbjct: 1093 ILLAEDNDVNQRVAVKILEKCNHDVTVVSNGLQALEAIKQRRFDVILMDVQMPVMGGFEA 1152 Query: 65 ARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + E + P ++ +T A + + + L+KP +V + + +T Sbjct: 1153 TGKIREYEREHGLPRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKHNQMVQMILKCVT 1212 Query: 120 I 120 + Sbjct: 1213 L 1213 >gi|219851955|ref|YP_002466387.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219546214|gb|ACL16664.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 576 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 10/121 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ ED + +L L K GY V + NG A D + E LL++D++MP M+G + Sbjct: 13 KVVIVEDSPTQQEYLRYILEKHGYTVFAATNGQQALDLIGEVRPDLLISDVIMPVMNGYD 72 Query: 64 LARRATELDP---DLKVMFITGFA---AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L RA + DP ++ V+ +T + VAL S A ++KP++ L+ + ++ Sbjct: 73 LC-RAIKSDPASQEIPVILLTALSDTKDVALALQSGAD---NFITKPYNEEYLILRIRQI 128 Query: 118 L 118 L Sbjct: 129 L 129 >gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 226 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GY+V+ +NG + + L++ D+++PE++G+E Sbjct: 3 KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR ++ ++ ++ +T AV ++KPF + +L+ + R+ Sbjct: 63 VLRRIRKV-SEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|152992375|ref|YP_001358096.1| two-component response regulator [Sulfurovum sp. NBC37-1] gi|151424236|dbj|BAF71739.1| two-component response regulator [Sulfurovum sp. NBC37-1] Length = 212 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++ILL EDD ++ + L GY+V +G +A D + + L + DI +P++D Sbjct: 1 MNKQILLLEDDFNLGDTIKDLLVAGGYQVDYVTSGQTAIDLTYDHQYDLYIFDINIPDID 60 Query: 61 GIEL---ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+++ R A +L P + + +T V D+ A + KPF+ +L+ +VN Sbjct: 61 GLDILKSLRDADDLTPAIFISAMTDLKTVLKAFDAGA---YDFIKKPFYSEELLIKVN 115 >gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA [Mycobacterium ulcerans Agy99] gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans Agy99] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +D Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 >gi|89891604|ref|ZP_01203108.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7] gi|89516151|gb|EAS18814.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7] Length = 238 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++KILL EDD + L L ++VV NG ++K +++ + L + D++MP D Sbjct: 4 VDKKILLVEDDPNFGTVLKDYLMMNDFDVVHAKNGMEGFEKFKKDNYDLCILDVMMPYKD 63 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G LA+ E + ++ ++F+T A Sbjct: 64 GFTLAKEIREKNEEVPIIFLTAKA 87 >gi|297172739|gb|ADI23705.1| response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [uncultured Oceanospirillales bacterium HF4000_21D01] Length = 204 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ +D+ D+R L LG+ + + SA + E FSL LTD+ +P+ D Sbjct: 2 MTEKVLIVDDEPDIRELLEITLGRMSLATENAADLTSARRLLSTEKFSLCLTDMRLPDGD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 GIEL + + V IT + + +SKP LRDL+N RL Sbjct: 62 GIELVKYIQTECKQMPVAMITAHGSTETAIKALKAGAFDFVSKPVDLQKLRDLINAALRL 121 >gi|317478044|ref|ZP_07937226.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316905833|gb|EFV27605.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 250 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD +R + L GYEV++ NG + +E+ ++++DI MP M+G Sbjct: 21 KLLLVEDDASLRYIVQGGLEDMIGGYEVITAANGEEGLKQWKEQHPDVIVSDIEMPVMNG 80 Query: 62 IELARRATELDPDLKVMF 79 E+ +R E D + ++F Sbjct: 81 YEMVKRIRETDGETPILF 98 >gi|312959656|ref|ZP_07774173.1| response regulator [Pseudomonas fluorescens WH6] gi|311286373|gb|EFQ64937.1| response regulator [Pseudomonas fluorescens WH6] Length = 393 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+ +R L L +G+ V+ +NG + L++ D+ MP+M G+EL Sbjct: 8 LLIIDDDEVVRASLAAYLEDSGFSVLQASNGQQGLQVFERDQPDLVICDLRMPQMGGLEL 67 Query: 65 ARRATELDPDLKVMFITG 82 R+ TEL P V+ ++G Sbjct: 68 IRQVTELAPQTPVIVVSG 85 >gi|308913674|gb|ADO51647.1| PRR59 [Zea mays] Length = 695 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++LL E DD R+ + L K GY V + +G A++ +RE F L+LT++ MP + G Sbjct: 54 RVLLVEHDDSTRQIVTALLRKCGYRVAAVADGMKAWEVMRERAYDFDLVLTEVAMPSLSG 113 Query: 62 IELARR 67 I+L R Sbjct: 114 IQLLSR 119 >gi|302388789|ref|YP_003824610.1| response regulator receiver protein [Thermosediminibacter oceani DSM 16646] gi|302199417|gb|ADL06987.1| response regulator receiver protein [Thermosediminibacter oceani DSM 16646] Length = 122 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 12/124 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D + +R+ L++AL GYE ++G A E+ L + D+ +P MDG Sbjct: 4 KRKILVVDDQEWVRKMLLEALAVLGYEAFGASSGPEALQLAVEKEPDLAVIDVSIPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVN 115 + L + E D + + I+G N + N + A L KPF + DL + Sbjct: 64 LTLLSKFREKDLKIPGILISG------NGEKNCIEKALKEGAFAYLVKPFDIGDLEGLIK 117 Query: 116 RLLT 119 + LT Sbjct: 118 QALT 121 >gi|302038871|ref|YP_003799193.1| putative CheY-like response regulator [Candidatus Nitrospira defluvii] gi|300606935|emb|CBK43268.1| putative Response regulator, CheY-like [Candidatus Nitrospira defluvii] Length = 144 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLL----TDIVMP 57 N ++L+ +D+ D+R+ + L KAGYEV+ NG A + + LLL DI MP Sbjct: 16 NGRVLVVDDEPDIRKVVRMTLQKAGYEVIEAENGEKAIEAINTGENRLLLDVLICDIRMP 75 Query: 58 EMDGIELARRATELDPDLKVMFITGF 83 +++G+E + P + ++ +TGF Sbjct: 76 KINGVEAIAYFQQEWPRVPIIVLTGF 101 >gi|293606829|ref|ZP_06689180.1| sensor histidine kinase with CheB and CheR activity [Achromobacter piechaudii ATCC 43553] gi|292814833|gb|EFF73963.1| sensor histidine kinase with CheB and CheR activity [Achromobacter piechaudii ATCC 43553] Length = 1372 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D +D+ + + L V + +G A F LLL+DI M +MDG E Sbjct: 1253 KVLIVDDSEDILHIMRELLEMEEASVTAVGSGRDALQAFETTSFDLLLSDIGMADMDGYE 1312 Query: 64 LARRATELDPD--LKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R E PD L + +TGF + +N A +A + SKP L +L++ V RL T Sbjct: 1313 LIRAIREKYPDNALPAIALTGFGSKEDMNEALQAGYSAHI-SKPVSLDNLLDIVRRLRT 1370 >gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 222 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MDG + Sbjct: 3 RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 62 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + R+T D V+ IT A ++KP + +++ V LL Sbjct: 63 LLDSLRSTRFDT--PVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALL 117 >gi|257459719|ref|ZP_05624828.1| DNA-binding response regulator [Campylobacter gracilis RM3268] gi|257443144|gb|EEV18278.1| DNA-binding response regulator [Campylobacter gracilis RM3268] Length = 220 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 55/116 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILL EDD+ + + + L AG++V C++ SA D E+ F L + D+ +P+ DG Sbjct: 2 SKILLVEDDETLCDLIGEYLKDAGFDVCVCSDAQSAADLAYEQKFDLFIFDVKIPKGDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + +F T + L KP+ L++L+ VN L+ Sbjct: 62 SLLKELRKSGDRTPAIFATSLNTLDDLEVGFKSGCDDYLKKPYELKELLLRVNSLI 117 >gi|326201407|ref|ZP_08191279.1| two component transcriptional regulator, LytTR family [Clostridium papyrosolvens DSM 2782] gi|325988975|gb|EGD49799.1| two component transcriptional regulator, LytTR family [Clostridium papyrosolvens DSM 2782] Length = 247 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 8/124 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVS-CNNGASAYDKVREEPFS--LLLTDIVM 56 M K+L+ +DDD MR L K + K G+E+V +G + V E FS ++ DI M Sbjct: 1 MELKVLIVDDDDGMRLVLKKIIEKNEGFELVGEAKSGETGLGLV--EAFSPHIVFLDIEM 58 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P M GIE A+R ++ P ++F T + P++ + L KPF + ++ + R Sbjct: 59 PGMGGIECAKRIMDIAPKTFIIFATAYENYM--PEAFEVYASDYLIKPFKIDRILTTLQR 116 Query: 117 LLTI 120 + I Sbjct: 117 IKEI 120 >gi|238025378|ref|YP_002909610.1| GAF sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237880043|gb|ACR32375.1| GAF sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 555 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD R+ + L + GY V + +G +A +RE PF + + D+ MP++DG+ L Sbjct: 425 VLVADDDTVGRKIVSAMLSRLGYRVEAFASGRAALAALRERPFDVAIVDLQMPDLDGVSL 484 Query: 65 ARR---ATELDPDLKVMFITG 82 AR +E + ++ +TG Sbjct: 485 ARELHTQSEFGATVPLIALTG 505 >gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A + EEP +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEEP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG 82 L R E D D+ V+ +T Sbjct: 61 LLRVFREKDRDIPVLMLTA 79 >gi|225569627|ref|ZP_03778652.1| hypothetical protein CLOHYLEM_05721 [Clostridium hylemonae DSM 15053] gi|225161097|gb|EEG73716.1| hypothetical protein CLOHYLEM_05721 [Clostridium hylemonae DSM 15053] Length = 526 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKAL-GKAGYEV--VSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+A+D+ +R+ ++ L G EV V NG A +K R E L++TDI MP D Sbjct: 5 KILVADDEKFIRKGIVSILSGNLREEVIFVEARNGLEALEKSRTETPGLIITDISMPGCD 64 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+E +R E++ ++ V+ ++G+ Sbjct: 65 GLEFIQRLKEINVNVPVIILSGY 87 >gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD ++ L +AL + Y + + NG A DK+ E + L+L DI++P MDG+ + Sbjct: 8 ILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGLSV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T V L+KPF + +L+ + LL Sbjct: 68 LKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALL 121 >gi|223936259|ref|ZP_03628172.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895121|gb|EEF61569.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + F+ + L + V CN+G S Y+ + L++ D+++P + G E Sbjct: 2 RLLLVEDEKKVAEFVARGLRAERFAVDVCNDGLSGYEMASTYNYDLMILDLMLPTLSGTE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R + + V+ +T +A ++ L+KPF +L+ V LL Sbjct: 62 ILKRLRKQSSQVPVLVLTARDGMAEKIENFEAGADDYLTKPFAFAELLVRVKALL 116 >gi|170681062|ref|YP_001744182.1| hybrid sensory histidine kinase TorS [Escherichia coli SMS-3-5] gi|170518780|gb|ACB16958.1| TMAO reductase system sensor TorS [Escherichia coli SMS-3-5] Length = 900 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|183220321|ref|YP_001838317.1| chemotactic two-component response regulator protein CheY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910438|ref|YP_001961993.1| response regulator receiver domain-containing protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775114|gb|ABZ93415.1| Response regulator receiver domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778743|gb|ABZ97041.1| Chemotactic two-component response regulator protein CheY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 119 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D + + L L G+EV S +NG A +K++ F + + D+ MP M GIE Sbjct: 3 KILTVDDAPAVLKILNLVLTTDGHEVESASNGMEALEKIQNTKFDIGIFDVNMPGMTGIE 62 Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A + D +K++ +T ++ + A L KPF L +++L+ Sbjct: 63 LTEKALKSDNGKTMKIVMLTTESSEEMKNKGKAAGAVGWLVKPFANESLAKLISQLI 119 >gi|154483086|ref|ZP_02025534.1| hypothetical protein EUBVEN_00784 [Eubacterium ventriosum ATCC 27560] gi|149736171|gb|EDM52057.1| hypothetical protein EUBVEN_00784 [Eubacterium ventriosum ATCC 27560] Length = 230 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + + L GY V S N +A + +R+ F L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|49475266|ref|YP_033307.1| two-component system regulatory protein [Bartonella henselae str. Houston-1] gi|49238072|emb|CAF27279.1| Two-component system regulatory protein [Bartonella henselae str. Houston-1] Length = 222 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 +IL+ EDD ++ R L +A+ AGY S NG AY E + ++ DI +P +DGI Sbjct: 2 RILIVEDDRNLNRQLAEAVKNAGYVSDSAFNGEEAYFLGSTESYDAVILDIGLPRLDGIC 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R+ L P L + ++ L D+ A + KPFHL +L+ + L+ Sbjct: 62 VVEKWRKEGHLMPVLMLTARDRWSDKVLGIDAGAD---DYVVKPFHLEELMARLRALI 116 >gi|27364340|ref|NP_759868.1| nitrogen regulation protein NR(I) [Vibrio vulnificus CMCP6] gi|37678380|ref|NP_932989.1| nitrogen regulation protein [Vibrio vulnificus YJ016] gi|320157732|ref|YP_004190111.1| nitrogen regulation protein NR(I) [Vibrio vulnificus MO6-24/O] gi|27360458|gb|AAO09395.1| nitrogen regulation protein NR(I) [Vibrio vulnificus CMCP6] gi|37197119|dbj|BAC92960.1| nitrogen regulation protein [Vibrio vulnificus YJ016] gi|319933044|gb|ADV87908.1| nitrogen regulation protein NR(I) [Vibrio vulnificus MO6-24/O] Length = 469 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R + K L A + + NG S + E +L++DI MP +DGIEL Sbjct: 6 VWVVDDDSSIRWVMEKTLSSANIKCETYANGESVLMALEREVPDVLVSDIRMPGIDGIEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ E P+L V+ +T + + ++ + L KPF + + + V R + Sbjct: 66 LRQVHEKCPNLPVIIMTAHSDLDAAVNAYQKGAFEYLPKPFDIDETLTLVERAI 119 >gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] Length = 236 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + ++ ++ +T + L D ++KPF R++V + Sbjct: 63 VTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADD-------YMTKPFSPREVVARIKA 115 Query: 117 LL 118 +L Sbjct: 116 IL 117 >gi|310790054|gb|EFQ25587.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1522 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 17/132 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-----------SLLLTD 53 +L+ ED+ +R L K L G N+G A D++++ F S++L D Sbjct: 1377 VLIVEDNIVNQRVLRKQLQNYGNNTHVANHGGEALDQLKKSRFWAGQEAEGFDLSVILMD 1436 Query: 54 IVMPEMDGIELARRATELD------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 + MP MDG+ A+R EL+ + ++ +T +A + A V+SKPF + Sbjct: 1437 LEMPVMDGMTCAKRIRELERAGTLITHIPIIAVTAYARPEQIESAKAAGIDDVISKPFRI 1496 Query: 108 RDLVNEVNRLLT 119 DL+ ++ L++ Sbjct: 1497 PDLMPKIEELVS 1508 >gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] Length = 227 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P + Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I Sbjct: 61 GLEVLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120 Query: 121 KN 122 + Sbjct: 121 SH 122 >gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 230 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 11/121 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I+L ED+ ++ + + L AG+EV ++G AY + ++ SL++ D+++P MDG+ Sbjct: 5 KHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ E DL ++ +T + LN ++ + KPF ++LV V + Sbjct: 65 TICRKVRE-QSDLPIIMVTARTEEIDRVLGLNMGAD-----DYICKPFSPKELVARVQAV 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 223 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ M+ +++ + K GY ++ ++G A ++ L++ DI+MP +DG Sbjct: 3 KILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDGFS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + E+ ++ ++ +T ++KPF + L+ +VN LL Sbjct: 63 VCRVSREM-TNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALL 116 >gi|254474100|ref|ZP_05087492.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] gi|211956796|gb|EEA92004.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] Length = 867 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ +R + K L K G+ +NG A D++ E + L + DI MP ++GIE Sbjct: 588 ILVAEDNKTNQRVIEKILQKGGHTCTLVSNGELALDELEENSYDLAIMDINMPVLNGIET 647 Query: 65 AR--RATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R TEL D L ++ +T A+ A ++ +KP + L+ ++ ++ Sbjct: 648 IKLHRITELGQDRLPIIALTADASRAAARNAQEAGADACATKPIEPQKLLTLIDDVI 704 >gi|170749674|ref|YP_001755934.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656196|gb|ACB25251.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1011 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 Q++L+ ED+ ++ F + L GYE N A D++ E F ++ +D+VMP M Sbjct: 887 QRVLVVEDNVEVGTFATQILEDLGYETSWAANAEEALDRLGSEGADFDVVFSDVVMPGMG 946 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ LA+ P L V+ +G++ V ++ VL KP+ L Sbjct: 947 GLALAQELRRRMPRLPVLLASGYSHVLAQDGTHG---FSVLHKPYSAEQL 993 >gi|171463435|ref|YP_001797548.1| two component transcriptional regulator, LuxR family [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192973|gb|ACB43934.1| two component transcriptional regulator, LuxR family [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 214 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY----DKVREEPFSLLLTDIVMPEM 59 +++ DD+ +R L L GY VV C+ A + + S + D+ MP M Sbjct: 13 EVVYVVDDEAVRDSLTWLLESNGY-VVRCHASAERFLQSLQSTDKSTISCAILDVRMPGM 71 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+EL R T + + V FITG V++ + + KPF DL V+R+LT Sbjct: 72 SGLELQERLTSENLPMPVAFITGHGDVSMAVSTMKRGAVDFIEKPFKENDLCGLVDRMLT 131 >gi|146321761|ref|YP_001201472.1| response regulator [Streptococcus suis 98HAH33] gi|145692567|gb|ABP93072.1| Response regulator [Streptococcus suis 98HAH33] Length = 278 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 46/94 (48%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 V + N A D + L+LTD+ MP+M G+E+ RR E PD ++ ++GF Sbjct: 42 VYTAENAEEALDYFSQHTVDLVLTDVSMPDMTGLEMVRRMKEQSPDTHIIIMSGFQEFEY 101 Query: 89 NPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + L KP + ++L + +L T+K Sbjct: 102 ARKAISLGAMDYLLKPINKQELAKLLQQLPTLKK 135 >gi|89902538|ref|YP_525009.1| response regulator receiver domain-containing protein [Rhodoferax ferrireducens T118] gi|89347275|gb|ABD71478.1| response regulator receiver domain protein [Rhodoferax ferrireducens T118] Length = 124 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QKIL+A+D+ ++ L L + GY V+ +G A + + E L+L D++MP+ Sbjct: 1 MSQKILVADDEPNIVISLEYLLKREGYTVLIARDGQEALEAIAREKPDLVLLDVMMPKKT 60 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G E+ A RA++ +K++ +T A D++ K + ++KPF R+LV + Sbjct: 61 GFEVCQALRASDDLQAIKILMLT-----AKGRDTDVAKGLALGADAYITKPFSTRELVLK 115 Query: 114 VNRLL 118 V LL Sbjct: 116 VAELL 120 >gi|83311738|ref|YP_422002.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946579|dbj|BAE51443.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 638 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILLAED+ ++ L + G+ V NG A DK+++E F L+L D+ MPEMDG E Sbjct: 402 SILLAEDNIFNQKVAAGLLNREGHRVTVACNGLEALDKLQDENFDLILMDMQMPEMDGPE 461 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFH---LRDLVNEV 114 RR + + + I A A+ D + A + ++KP LR + EV Sbjct: 462 ATRRIRAMPGPVASIPIIALTANAMAVDVARCRAAGMDGHVAKPIDPLLLRSAIAEV 518 >gi|331672528|ref|ZP_08373317.1| TMAO reductase sytem sensor TorS [Escherichia coli TA280] gi|331070171|gb|EGI41537.1| TMAO reductase sytem sensor TorS [Escherichia coli TA280] Length = 973 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 742 RLLLIEDNPLTQRITVEMLNNSGAQVVAVGNAAHAIETLQNSEPFAAALVDFDLPDIDGI 801 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 802 TLARQLVQQYPSL---VLIGFSA 821 >gi|303248787|ref|ZP_07335038.1| response regulator receiver modulated CheW protein [Desulfovibrio fructosovorans JJ] gi|302489799|gb|EFL49729.1| response regulator receiver modulated CheW protein [Desulfovibrio fructosovorans JJ] Length = 326 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 14/96 (14%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---------EPFS----LL 50 K L+A+D +RR + +L KAG+EV NG A++++ E P + +L Sbjct: 190 KALIADDSTTIRRMIGTSLEKAGFEVTRTINGRIAWEQLTEWKEAAARENRPITDFVHVL 249 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 ++DI MP MDG L R+ E DP LK + + F+++ Sbjct: 250 VSDIEMPAMDGHSLTRKVKE-DPVLKQLPVILFSSL 284 >gi|262275648|ref|ZP_06053457.1| hypothetical protein VHA_002629 [Grimontia hollisae CIP 101886] gi|262219456|gb|EEY70772.1| hypothetical protein VHA_002629 [Grimontia hollisae CIP 101886] Length = 960 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 4 KILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K +L DD + R L+KA L G +V +G A DKV++ + L+L DI MP DGI Sbjct: 845 KRVLVVDDMQVNRMLVKAYLVSEGIDVEEATSGQEAIDKVKDGHYDLILMDIHMPGKDGI 904 Query: 63 ELARRATELDPDLKVMFITG 82 + A + LD L ++ ++G Sbjct: 905 QTALEISNLDRTLPIIALSG 924 >gi|260843241|ref|YP_003221019.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O103:H2 str. 12009] gi|257758388|dbj|BAI29885.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O103:H2 str. 12009] Length = 914 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLVQQYPSL---VLIGFSA 762 >gi|302876019|ref|YP_003844652.1| two component transcriptional regulator, AraC family [Clostridium cellulovorans 743B] gi|307686736|ref|ZP_07629182.1| two component transcriptional regulator, AraC family protein [Clostridium cellulovorans 743B] gi|302578876|gb|ADL52888.1| two component transcriptional regulator, AraC family [Clostridium cellulovorans 743B] Length = 529 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ +DD +R+ LIK + + EV+ NG +A ++ + ++++TDI MP MD Sbjct: 3 KVLIVDDDKIIRKGLIKIISRKCPEVIIAGEATNGKNALHQLEQLDVNVVITDIKMPIMD 62 Query: 61 GIELARRATELDPDLKVMFITGF 83 G EL ++L P++ + ++GF Sbjct: 63 GTELVEEISKLYPNIITVVLSGF 85 >gi|239997233|ref|ZP_04717757.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas macleodii ATCC 27126] Length = 927 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL+AED+ D R F+ L G V NG A+ ++ + P F LLL+DI MPEMDG Sbjct: 802 RILVAEDEQDARDFIKLFLESNGARVNVVKNGLLAWKEINDMPEAFDLLLSDIGMPEMDG 861 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPD 91 + L RA+E+ P++ + A A D Sbjct: 862 LGLVLKIRASEI-PEIAKLNAVALTAYAYTSD 892 >gi|239906599|ref|YP_002953340.1| transcriptional regulatory protein ZraR [Desulfovibrio magneticus RS-1] gi|239796465|dbj|BAH75454.1| transcriptional regulatory protein ZraR [Desulfovibrio magneticus RS-1] Length = 462 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +DD L L GY V +GA A + VR PF +L D+ M M Sbjct: 1 MRAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E E +P + V+ +T +++V + L+KP L + V R L Sbjct: 61 GMEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERAL 118 >gi|255530788|ref|YP_003091160.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255343772|gb|ACU03098.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 526 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ + +IK L K GY NG A K F ++L D+ MPEMDG E Sbjct: 399 VLIVEDNAINQLLVIKLLQKKGYHTTVAENGKIALHKYASADFDIILMDLQMPEMDGYET 458 Query: 65 A---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R D+ ++ +T + +SKPFH +L ++ L+ I Sbjct: 459 TIHIRNMKSGKKDIPIVAMTAHTIKGEREKCLSIGMNDYISKPFHASELYEKIQGLVAI 517 >gi|225678001|gb|EEH16285.1| signal transduction histidine-protein kinase barA [Paracoccidioides brasiliensis Pb03] Length = 1406 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+D +R +K L K ++V +NG A + +++ F ++L D+ MP M G E Sbjct: 1211 ILLAEDNDVNQRVAVKILEKCNHDVTVVSNGLQALEAIKQRRFDVILMDVQMPVMGGFEA 1270 Query: 65 ARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + E + P ++ +T A + + + L+KP +V + + +T Sbjct: 1271 TGKIREYEREHGLPRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKHNQMVQMILKCVT 1330 Query: 120 I 120 + Sbjct: 1331 L 1331 >gi|168014234|ref|XP_001759657.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp. patens] gi|162689196|gb|EDQ75569.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp. patens] Length = 927 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD + I+ + G+E+ NNGA A V++E + ++L D+ MP MDG+E Sbjct: 777 KILVAEDDPVNVKVAIQMMVALGHELKVVNNGADAVQAVKQESYDVVLMDVHMPVMDGLE 836 Query: 64 LARR 67 R Sbjct: 837 ATRH 840 >gi|161505338|ref|YP_001572450.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866685|gb|ABX23308.1| hypothetical protein SARI_03483 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 441 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRD 109 + L+P + ++ +T F++V ++ L KP HL++ Sbjct: 68 LKEIKLLNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDHLQE 115 >gi|160945822|ref|ZP_02093048.1| hypothetical protein FAEPRAM212_03355 [Faecalibacterium prausnitzii M21/2] gi|158443553|gb|EDP20558.1| hypothetical protein FAEPRAM212_03355 [Faecalibacterium prausnitzii M21/2] Length = 230 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + + L GY V S N +A + +R+ F L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + PD V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHPDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|145589989|ref|YP_001156586.1| histidine kinase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048395|gb|ABP35022.1| amino acid-binding domain sensor hybrid histidine kinase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 806 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ ED R+ + L G EV C+N +A +++ E F LLLTD +P M G ELA Sbjct: 571 LVVEDHAASRQIISLQLQALGIEVKVCDNAMTALERLSENHFDLLLTDQSIPGMQGSELA 630 Query: 66 RRA-TELDPDLKVMFITG--FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ++ DL ++ IT +A + N A N VL KP L L NE+ R ++ Sbjct: 631 KHIRSQGYQDLIIIGITADIYALDSRNQFLAAGMNG-VLIKPISLLSLENELTRYFQLQ 688 >gi|86158813|ref|YP_465598.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775324|gb|ABC82161.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 469 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LLA+D +++ + +VV+ +NG A K RE +++L D+VMP + Sbjct: 1 MPKTLLLADDSITIQKVVGITFANEDVQVVAVDNGEDALAKARELRPAVILADVVMPRRN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G EL A + DP L+ + + A D + A +SKPF + L+N+V L Sbjct: 61 GYELC-EAVKSDPALRGIPVLLLAGTFEAFDEARARGAHADGHVSKPFESQTLINKVREL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|317484439|ref|ZP_07943352.1| sigma-54 interaction domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924299|gb|EFV45472.1| sigma-54 interaction domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 459 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD R L L GY ++G +A +KV+E + +L+D+ M MDGI Sbjct: 7 ILIVDDDSSHRAMLRTVLRGWGYATDEADDGDTAVEKVKERAYDAVLSDVRMARMDGISA 66 Query: 65 ARRATELDPDLKVMFITGFAAV 86 R +P + V+ +T + +V Sbjct: 67 IREILHHNPSIPVLVMTAWQSV 88 >gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 227 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 56/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + + L + G+ V +G + + + LL++DI++P + GIE Sbjct: 2 KILIVEDEARIALLVKRGLEEQGHIVAVAYDGMAGKKLALQHDYDLLISDIILPLLSGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L R P+L V+ +T + L KPF R+L+ + ++ KN Sbjct: 62 LCREIRMAKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVMNRKN 120 >gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD D+R L+ K GY V NG ++ + FSL+L D++MP+MDG Sbjct: 6 ENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMDGY 65 Query: 63 ELARRATE 70 + + E Sbjct: 66 TMLCKLRE 73 >gi|255322913|ref|ZP_05364053.1| DNA-binding response regulator [Campylobacter showae RM3277] gi|255300025|gb|EET79302.1| DNA-binding response regulator [Campylobacter showae RM3277] Length = 222 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD R + + L GYEV +G A DK+ + LL+ DI +P + G E Sbjct: 2 KILLLEDDFVYRESVSEYLESLGYEVDEAPDGKIACDKIAAGFYHLLILDIKVPHISGHE 61 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + A ++ + +M +T AV N + L KPF L +L VN L+ Sbjct: 62 VIKYAKDIGCETPIMIMTSLVDIDDMAVGYELGCN-----EYLKKPFELAELKFRVNELM 116 >gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 19/127 (14%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+MDG E+ Sbjct: 6 ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN-- 115 R+ + ++ ++F++ + L D ++KPF +LV VN Sbjct: 66 TRQ-IRVKYNMPIIFLSAKTSDFDKVTGLVLGADD-------YMTKPFAPIELVARVNAQ 117 Query: 116 --RLLTI 120 R LT+ Sbjct: 118 LRRFLTL 124 >gi|220916674|ref|YP_002491978.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954528|gb|ACL64912.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 476 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LLA+D +++ + +VV+ +NG A K RE +++L D+VMP + Sbjct: 1 MPKTLLLADDSITIQKVVGITFANEDVQVVAVDNGEDALAKARELRPAVILADVVMPRRN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G EL A + DP L+ + + A D + A +SKPF + L+N+V L Sbjct: 61 GYELC-EAVKSDPALRGIPVLLLAGTFEAFDEARARGAHADGHISKPFESQALINKVREL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|190574918|ref|YP_001972763.1| putative two-component sensor histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] gi|190012840|emb|CAQ46469.1| putative two-component sensor histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] Length = 567 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 7/109 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F + AL + Y VV N A ++ + F ++ +D+VMP +G+ Sbjct: 445 VLVVEDNVDVAEFAVGALRELEYNVVLARNADEALAELERDAARFHVVFSDVVMPGTNGL 504 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 +LAR PDL ++ +G++ +A +P +L KP+ L+ L Sbjct: 505 DLARTIRSRLPDLPIILTSGYSELLARDPG----HGFTLLRKPYSLKQL 549 >gi|218780373|ref|YP_002431691.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218761757|gb|ACL04223.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 463 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D+ DM L ++L VV + +G A + + +E F L+L DI MP+M Sbjct: 1 MKRRLLIVDDEPDMLHLLKRSLEPDLNCVVETAASGLEAMEILGQERFDLILADIKMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+EL + PD ++ +TG ++ + + ++KPF LV + + L Sbjct: 61 DGLELLEKVQAQYPDQTMVMMTGHGSIDVAVQAIQKGAYDFVTKPFDHEALVVRLEKAL 119 >gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 249 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ +D+ +RR L L GYE+V +G A ++ E L++ D++MP M+G Sbjct: 4 QHKILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +++ + E + ++ +T V+ L KPF ++L + + +L Sbjct: 64 LQVCQTLRE-STGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAIL 119 >gi|153003972|ref|YP_001378297.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027545|gb|ABS25313.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 475 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++RR L L GY V + A + EP L + DI +P MDG+ L Sbjct: 8 VLVVDDERNIRRTLRMVLEAEGYAVSEAESAEDALKILEGEPVDLGIFDIRLPGMDGLAL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 RA EL DL V+ I+G A + D+ SKP RD V L++++N Sbjct: 68 LSRARELWRDLPVVVISGHADTSDVVDAVKRGATDFFSKPVD-RDRV-----LVSVRN 119 >gi|193066318|ref|ZP_03047368.1| TMAO reductase system sensor TorS [Escherichia coli E22] gi|194428476|ref|ZP_03061016.1| TMAO reductase system sensor TorS [Escherichia coli B171] gi|192926025|gb|EDV80669.1| TMAO reductase system sensor TorS [Escherichia coli E22] gi|194413528|gb|EDX29810.1| TMAO reductase system sensor TorS [Escherichia coli B171] Length = 904 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLVQQYPSL---VLIGFSA 752 >gi|307721631|ref|YP_003892771.1| response regulator receiver protein [Sulfurimonas autotrophica DSM 16294] gi|306979724|gb|ADN09759.1| response regulator receiver protein [Sulfurimonas autotrophica DSM 16294] Length = 221 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K LL EDD + + K L Y +VS +G A + + EE F + + DI +P + G+E Sbjct: 2 KALLVEDDIQLNTTVKKFLQLQNYNIVSIFDGEEAINIIDEERFDVYIIDINLPNISGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN--AKVLSKPFHLRDLVNEVNRLL 118 + + + D ++ +T A++ +N +A N ++ + KPFHL++L + LL Sbjct: 62 IVKYIRKKDLISPIIIMT--ASLEVNNFVDAYDNGCSEYIKKPFHLKELQIRMQHLL 116 >gi|293604643|ref|ZP_06687045.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292816974|gb|EFF76053.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 239 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 I L EDD D R L LG G+ V +C+N A+ Y +++E+P +++ D +P DG Sbjct: 10 IGLLEDDADFREELALGLGGYGFRVAFACDNAAAFYRRLQEQPCDIVILDAHLPGEDGFS 69 Query: 64 LARRATELDPDLKVMFITGFAAV 86 +A R L P + ++ +TG +A+ Sbjct: 70 VATRLRALSP-VGIVMLTGRSAL 91 >gi|251773294|gb|EES53844.1| two component, sigma54 specific, transcriptional regulator, Fis family [Leptospirillum ferrodiazotrophum] Length = 473 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 43/86 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL ED+ +R L + GY+V + + +R P +LL DIVMP M Sbjct: 1 MSSSILLVEDEPLIREAFALRLSERGYQVTTATSAEEGLVALRTSPPDILLLDIVMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G++L R D D+ V+ +T V Sbjct: 61 GLDLLREIRASDLDIPVILLTARGTV 86 >gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 237 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++++R + L + GYEV + NG +D + L++ D++MP+ D Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + ++ ++ +T + + D ++KPF R+LV Sbjct: 61 GWELCEEIRQ-QSNVPIIMLTAKGEERDRILGLTMGADD-------YVTKPFSPRELVLR 112 Query: 114 VNRLL 118 V +L Sbjct: 113 VQIIL 117 >gi|255037318|ref|YP_003087939.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950074|gb|ACT94774.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 228 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL EDD ++ L + YEVV +GA A D +E F + + DI++P MD Sbjct: 1 MKKRILYVEDDPNLAFATKDNLEQYDYEVVHATDGAEALDFFGKEHFDICVLDIMLPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G LA + D + ++F++ A + + K K+ ++KPF + +L ++ Sbjct: 61 GFTLAEKIRASDSQVPILFLS-----ARSMQDDKIKGLKLGADDYITKPFSIEELKLRID 115 Query: 116 RLL 118 L Sbjct: 116 VFL 118 >gi|295663949|ref|XP_002792527.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01] gi|226279197|gb|EEH34763.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01] Length = 1285 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+D +R +K L K ++V +NG A + +++ F ++L D+ MP M G E Sbjct: 1093 ILLAEDNDVNQRVAVKILEKCNHDVTVVSNGLQALEAIKQRRFDVILMDVQMPVMGGFEA 1152 Query: 65 ARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + E + P ++ +T A + + + L+KP +V + + +T Sbjct: 1153 TGKIREYEREHGLPRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKHNQMVQMILKCVT 1212 Query: 120 I 120 + Sbjct: 1213 L 1213 >gi|226228598|ref|YP_002762704.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091789|dbj|BAH40234.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 689 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +IL+ +D+ + + L + G++V + + A A + + F L+TD+ MP M G Sbjct: 570 RILVVDDEAMVLMATRRQLERLGWQVTALTDPAEAASLLADNTTQFDCLMTDLAMPGMSG 629 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++LA A +L P+L V+ TG+ L P + VL KPF +L NEV Sbjct: 630 VQLAGVAEQLHPELPVVLTTGYLDHELQPGERY-RIVAVLPKPFTSVEL-NEV 680 >gi|218887239|ref|YP_002436560.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758193|gb|ACL09092.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 477 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD R L L GY ++G SA KVR+ + +L D+ M MDGI Sbjct: 6 ILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARMDGIAA 65 Query: 65 ARRATELDPDLKVMFITGFAAV 86 R + +P V+ +T F++V Sbjct: 66 LRHILDWNPATPVLIMTAFSSV 87 >gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 961 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 49/106 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R +L L V+ +T A LSKP L L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDAL 932 >gi|170022385|ref|YP_001718890.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] gi|186897301|ref|YP_001874413.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] gi|169748919|gb|ACA66437.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] gi|186700327|gb|ACC90956.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 851 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 +Q +L+ ED+ D+R+ L + L + GY + + A + + P S++++D+++P +M Sbjct: 737 DQLVLVLEDEPDVRQTLCEQLHQLGYLTLETGDSRQALALMADVPDISIVISDLMLPGDM 796 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ ++A + P LK++ I+G L N ++L KPF+ + LV + R+ Sbjct: 797 TGAEVLQQARSVYPHLKLLLISG---QDLRRSKNFMPEVELLRKPFNQQQLVQALQRV 851 >gi|160880278|ref|YP_001559246.1| two component AraC family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428944|gb|ABX42507.1| two component transcriptional regulator, AraC family [Clostridium phytofermentans ISDg] Length = 260 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+AED+D +R+ L + GY +V NG +K+RE +++TDI+MP+++ Sbjct: 3 KVLIAEDEDIIRKGLAYTIDWLSIGYVLVGEAANGEEGLEKIRELKPDVVITDIMMPKLN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R+A++ + K + +T +A ++ K L KP + D + EV R L Sbjct: 63 GLELIRQASK-EVRFKSVILTSYAEFDYAKEAIELKAYDYLMKPVDV-DKLKEVMRKL 118 >gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + L L + G+ V++ NG A D F LL D+++P MDG E Sbjct: 2 RILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGFE 61 Query: 64 LARRATELDPDLKVMFIT 81 +ARR + ++ +T Sbjct: 62 VARRLRHKGRQVPILMLT 79 >gi|50914648|ref|YP_060620.1| two-component response regulator YesN [Streptococcus pyogenes MGAS10394] gi|251782960|ref|YP_002997263.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|50903722|gb|AAT87437.1| Two-component response regulator YesN [Streptococcus pyogenes MGAS10394] gi|242391590|dbj|BAH82049.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 246 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLIRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|85859693|ref|YP_461895.1| response regulator [Syntrophus aciditrophicus SB] gi|85722784|gb|ABC77727.1| response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Syntrophus aciditrophicus SB] Length = 456 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 46/100 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED R L L K G+ V +G A + F L+L D MP MDG+++ Sbjct: 6 ILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMDGMQV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 + L+P+ V+ IT + + D+ ++KP Sbjct: 66 LQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKP 105 >gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 822 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 9/102 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED++ + +AL K GY+ +NG ++++ E F ++L DI MPE+DGIE Sbjct: 695 RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 754 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103 + R+ + + ++ +AL D+ K +SK Sbjct: 755 ATKWIRSKNQNSEFPII-------IALTADAIESSKEKYISK 789 >gi|162419949|ref|YP_001608379.1| sensory box histidine kinase/response regulator [Yersinia pestis Angola] gi|162352764|gb|ABX86712.1| sensory box histidine kinase/response regulator [Yersinia pestis Angola] Length = 851 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 +Q +L+ ED+ D+R+ L + L + GY + + A + + P S++++D+++P +M Sbjct: 737 DQLVLVLEDEPDVRQTLCEQLHQLGYLTLETGDSRQALALMADVPDISIVISDLMLPGDM 796 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ ++A + P LK++ I+G L N ++L KPF+ + LV + R+ Sbjct: 797 TGAEVLQQARSVYPHLKLLLISG---QDLRRSKNFMPEVELLRKPFNQQQLVQALQRV 851 >gi|329848555|ref|ZP_08263583.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843618|gb|EGF93187.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 946 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 IL+ +D+D +R L + GY+VV + A +R+ +L+TD +M M+G + Sbjct: 835 ILVVDDEDLVRATTTDMLTELGYKVVEAASAEDALHVLRDRHDIDMLVTDHLMAGMNGTD 894 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R+ PDL + ++G+A + + P A+ L KPF DL + +LL+ Sbjct: 895 LVRQMRAERPDLLTLVVSGYADI----EGVTPDIAR-LVKPFRQTDLAAAIKQLLS 945 >gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus 10329] Length = 235 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + + + + L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGGAMWQLLNDHHPDLIILDIMMPGEDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ + + D+ ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTIL 118 >gi|308270676|emb|CBX27287.1| Polar-differentiation response regulator divK [uncultured Desulfobacterium sp.] Length = 120 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDD---MRRFLIKALGKAGYEVVSCNNGASAYDK-VREEPFSLLLTDIVM 56 MN +L+ ED+ M RFL++ K+G+ VV NG DK + +P ++LL DI + Sbjct: 1 MNGTLLIIEDNQQNLYMMRFLLE---KSGFTVVGAENGRDGIDKALCHKPLAILL-DIQL 56 Query: 57 PEMDGIELA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 PEMDG +A ++ ELD ++ ++ +T +A V A + KP V E Sbjct: 57 PEMDGYAVAAELKKHRELD-EVPIIAVTSYAMVGDRERILAAGATGYIEKPIDPETFVGE 115 Query: 114 VNRLL 118 + + L Sbjct: 116 IRKYL 120 >gi|301166401|emb|CBW25977.1| putative chemotaxis two-component system response regulator [Bacteriovorax marinus SJ] Length = 132 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 40/62 (64%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD +R + + L GY VV +G A K++ + FSL++TD+ MP+ DGI+ Sbjct: 16 QILLVDDDRGIRSSMAELLSSDGYSVVEAADGLEASLKMKNQNFSLVITDLNMPKKDGIK 75 Query: 64 LA 65 LA Sbjct: 76 LA 77 >gi|291483138|dbj|BAI84213.1| hypothetical protein BSNT_01182 [Bacillus subtilis subsp. natto BEST195] Length = 309 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Query: 4 KILLAEDD----DDMRRFL-IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 KILLA+D+ D M + ++LG + + NG AY+K+ + ++++TDI MP Sbjct: 3 KILLADDERIILDGMAGIIEWESLGAS--LIGKAQNGHEAYEKIIHKQPNIVITDIKMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG+EL ++ + + P ++ + ++GF ++ L KP + + +++ + ++ Sbjct: 61 MDGLELIKKVSAVSPSVQFIVLSGFGEFEYAKEAMKYGVKHYLLKPCNEQQIISSLEEII 120 Query: 119 T 119 Sbjct: 121 A 121 >gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] Length = 228 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++ RF+ L GYE C NG + +E + +L D+++PE++G+E Sbjct: 3 RILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLMLPELNGLE 62 Query: 64 LARRATEL 71 + RR ++ Sbjct: 63 VCRRVRQV 70 >gi|255692705|ref|ZP_05416380.1| response regulator CbrB [Bacteroides finegoldii DSM 17565] gi|260621540|gb|EEX44411.1| response regulator CbrB [Bacteroides finegoldii DSM 17565] Length = 457 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ EDD L LGK G+EV S + A A + + L+L+D+ +P+ + Sbjct: 1 MMRSILIVEDDITFGMMLKTWLGKKGFEVSSVSTIARARKHIESQTVDLILSDLRLPDHE 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 GI+L + E + ++ +TG+A + Sbjct: 61 GIDLLKWMNEQGKAIPLIIMTGYADI 86 >gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101] gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101] Length = 225 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 56/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD + +++ L + G+ V ++G A + + D ++P MDG+ Sbjct: 2 KILLAEDDPKIADYIVAGLSENGHSVDHVSDGRDALSYCLYNDCDMAILDRMLPGMDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + L V+F+T V + A L+KPFH +L ++ ++ K+ Sbjct: 62 VLKALRASKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIVRRKS 120 >gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA [Mycobacterium marinum M] gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +D Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 >gi|157146841|ref|YP_001454160.1| DNA-binding transcriptional activator CusR [Citrobacter koseri ATCC BAA-895] gi|157084046|gb|ABV13724.1| hypothetical protein CKO_02615 [Citrobacter koseri ATCC BAA-895] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + LL+ DI++P+++G + Sbjct: 7 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGWD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + ++ +T + L KPF +L+ V LL Sbjct: 67 IVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 121 >gi|254254553|ref|ZP_04947870.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158] gi|124899198|gb|EAY71041.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158] Length = 1416 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA-SAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D +D+ K L G +V+C A +A D R F L+L+DI MP MDG Sbjct: 1289 RVLVVDDSEDILGAFSKVLQLQG-AIVTCKGSAQAAIDAARHGSFDLVLSDIAMPGMDGY 1347 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL R RA ++ + +TGF V ++ L+KP + L E+ R+++ Sbjct: 1348 ELIRTLRALPAMANVPAIALTGFGRVHDKSEARQAGYDGHLTKPVAVTALKAEIARVMS 1406 >gi|116666741|pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 817-949) Containing Phosphoreceiver Domain Length = 133 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 71 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 113 >gi|89519319|gb|ABD75796.1| putative A-signal production regulator [uncultured bacterium] Length = 389 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 M + +L DDD + L + Y+++ +G + ++ + P +++TD MPEM Sbjct: 1 MEKYAILYVDDDHENLRAFRRLFRKEYQILLAESGEEGLELLQSQSPIPIIITDQRMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE + EL PD + ITGF V AL N + + ++KP+ ++L + R + Sbjct: 61 TGIEFLEKTRELSPDSIRIIITGFTDVQALIDAINTGRVYRYITKPWDEQELYVTLKRAI 120 >gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti] gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti] Length = 246 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD +R+ L + + GY V +G + + ++P ++L D+++P DG+ Sbjct: 9 EHILVVDDDSRIRQMLSRYFEEEGYRVSLAGDGQEMRECLDKQPVDVILLDLMLPGEDGL 68 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR RA D+ ++ +TG + V ++KPFHLR+++ V +L Sbjct: 69 TLARDIRARS---DVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVL 123 >gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis regulator component C gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhi] gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 948 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 49/106 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R +L L V+ +T A LSKP L L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDAL 932 >gi|115526665|ref|YP_783576.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] gi|115520612|gb|ABJ08596.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] Length = 121 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D +R+ + L G+ V+ +GA +K +L++TD+ MP M+G++L Sbjct: 4 ILTVDDSPSIRQMIKVVLAPLGHTVLEAGDGAQGLEKATACKPNLVITDLNMPVMNGLDL 63 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RAT L ++F+T + A+ ++ ++KPF L+ VN+L+ Sbjct: 64 IRALRATPALTGLPIVFLTTESNDAVKQEAKKAGATGWITKPFSQDQLLAVVNKLV 119 >gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 991 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 11/122 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED ++ L+ L K G V NG A + P+ L+L D MPEMDG E Sbjct: 736 RILVVEDSVVNQQVLVAMLSKNGCSVDIAENGVEALKALGTTPYDLVLMDCQMPEMDGFE 795 Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 RR L+PD+ V+ +T A A+ D +A + + KP D+V + Sbjct: 796 ATRRIRSGEHGVLNPDIAVIAVT---ANAMKGDRERCLHAGMNDYIPKPVRTSDIVGLLE 852 Query: 116 RL 117 R+ Sbjct: 853 RI 854 >gi|125973895|ref|YP_001037805.1| response regulator receiver protein [Clostridium thermocellum ATCC 27405] gi|256005016|ref|ZP_05429987.1| response regulator receiver protein [Clostridium thermocellum DSM 2360] gi|281418058|ref|ZP_06249078.1| response regulator receiver protein [Clostridium thermocellum JW20] gi|125714120|gb|ABN52612.1| response regulator receiver protein [Clostridium thermocellum ATCC 27405] gi|255990984|gb|EEU01095.1| response regulator receiver protein [Clostridium thermocellum DSM 2360] gi|281409460|gb|EFB39718.1| response regulator receiver protein [Clostridium thermocellum JW20] gi|316939902|gb|ADU73936.1| response regulator receiver protein [Clostridium thermocellum DSM 1313] Length = 124 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR+ L L GY +V +G A DK RE ++ D+ MP MDG+ Sbjct: 5 KILVVDDALFMRKLLGNTLKDIGYSNIVFAQDGYEAVDKAREIQPEVVTLDVSMPGMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVN 112 E ++ ++ D K++ ++ A + A KN V + KPF +D+ N Sbjct: 65 EAIKKILQVSCDSKIIMVS--AVTSEKVIQQAMKNGAVAYIPKPFSRKDVEN 114 >gi|332799941|ref|YP_004461440.1| LytTR family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697676|gb|AEE92133.1| two component transcriptional regulator, LytTR family [Tepidanaerobacter sp. Re1] Length = 238 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ ED+ + + K L E+ + G A + ++++ +LL DI +P++DGI Sbjct: 4 ILVCEDEKNTLAMICKLLKGNSLVEEIFPASCGNEAVEIIKKQSPHILLLDIDLPDIDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVA 87 E+A+ A DPD ++FITG+ A Sbjct: 64 EVAKIANTFDPDTSIVFITGYPDYA 88 >gi|323165485|gb|EFZ51272.1| TMAO reductase sytem sensor TorS [Shigella sonnei 53G] Length = 904 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 245 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV + +GA A RE ++ D+++P+MDG+ Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPDMDGLT 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R PD+ V+F+T AV ++KPF L ++V + LL Sbjct: 81 VLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLL 135 >gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 228 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+A+D+ +R L AL + G+ V + +G A +KVR +L+ D++MP++ Sbjct: 1 MDKKILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G E+ RR E + ++ +T + L D +SKPF LR+L+ Sbjct: 61 GYEVCRR-LESRKGIGILLLTAKNDIVDKVLGLELGADD-------FMSKPFDLRELLAR 112 Query: 114 VNRLL 118 + L+ Sbjct: 113 IKALV 117 >gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4] gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ IL+ +D+ MR L L G+++ + G A K+R P + L++ DI+MP++ Sbjct: 4 NKTILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDL 63 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG E+ + E + ++ ++ A+ D L+KPF +L+ V LL Sbjct: 64 DGFEVCKIVREYST-IPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALL 121 >gi|255535270|ref|YP_003095641.1| two component, sigma54 specific, transcriptional regulator, Fis family [Flavobacteriaceae bacterium 3519-10] gi|255341466|gb|ACU07579.1| two component, sigma54 specific, transcriptional regulator, Fis family [Flavobacteriaceae bacterium 3519-10] Length = 507 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 48/84 (57%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++ +R L + + G+EV+ ++ S K+ + ++L D+ +P+ G+ Sbjct: 60 KKILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGV 119 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 ELA+ E P +++ +T + + Sbjct: 120 ELAKAIKEKYPSTEIILLTAYGNI 143 >gi|225012873|ref|ZP_03703306.1| response regulator receiver protein [Flavobacteria bacterium MS024-2A] gi|225002995|gb|EEG40972.1| response regulator receiver protein [Flavobacteria bacterium MS024-2A] Length = 515 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 55/119 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D+ +M + L GY C NG A D ++ F ++L D MP ++G+E Sbjct: 5 KILWVDDEIEMLKPHFLFLEDRGYTTTPCTNGQDALDLIKANRFDVILLDENMPGLNGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 P+L V+ IT + D+ K + L KP + ++ + ++L KN Sbjct: 65 TLAEIKNRKPNLPVVMITKNEEEQIMEDAIGSKISDYLIKPVNPHQILLSLKKILNQKN 123 >gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1977 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ + L GY V+ NG A D + L+L DI MP +DG+ Sbjct: 1859 ILLAEDNEANISTISSYLKAKGYRVLVAKNGQEAIDLGQAAQPDLILMDIQMPGVDGLSA 1918 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P + I A+A+N D + A + LSKP L LV + +LLT Sbjct: 1919 IQQLRQA-PSSAHLPIIALTALAMNGDRDRCLAAGANEYLSKPVKLSQLVILIQQLLT 1975 >gi|167761770|ref|ZP_02433897.1| hypothetical protein BACSTE_00108 [Bacteroides stercoris ATCC 43183] gi|167700406|gb|EDS16985.1| hypothetical protein BACSTE_00108 [Bacteroides stercoris ATCC 43183] Length = 474 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ EDD L LGK G++V S ++ A A + E L+L+D+ +P+ DGI Sbjct: 2 KSILIVEDDITYSMILKTWLGKKGFQVSSASSIARAQKHIEAETVDLILSDLRLPDRDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 +L + E + ++ +TG+A + Sbjct: 62 DLLKWLGEHSLHIPLIIMTGYADI 85 >gi|161986555|ref|YP_309969.2| hybrid sensory histidine kinase TorS [Shigella sonnei Ss046] Length = 914 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|134045334|ref|YP_001096820.1| response regulator receiver protein [Methanococcus maripaludis C5] gi|132662959|gb|ABO34605.1| response regulator receiver protein [Methanococcus maripaludis C5] Length = 119 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED++D+ + L Y+V+ ++G ++++E P L++ DI+MP M G Sbjct: 2 KKILVVEDEEDILNLVKIILEINNYDVIVAHDGYQGLEQIKENP-DLIILDIMMPGMTGW 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + + D+ V+ +T A ++ + K + KPF DL+ +V+ +L Sbjct: 61 EFLDKIRQDGFDIPVIVLTANAQMSTLETAIDKKVDDCIVKPFDREDLMEKVSTIL 116 >gi|119485362|ref|ZP_01619690.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457118|gb|EAW38244.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 372 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 8/122 (6%) Query: 6 LLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD FL+K AL + G+ VV +G +A +++ P +L+L D++MPEMDG E+ Sbjct: 12 ILAVDDLPDNLFLLKLALEQEGHNVVLVEDGKTALEQIEASPPNLVLLDVMMPEMDGYEV 71 Query: 65 AR--RATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ P + ++ IT ++V D+ A + KP + +L V LL + Sbjct: 72 TKRIRSNPKYPYIPILLITAHEQSSVVEGLDAGAD---DFIRKPVQIDELQARVRSLLRL 128 Query: 121 KN 122 K Sbjct: 129 KQ 130 >gi|222055426|ref|YP_002537788.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221564715|gb|ACM20687.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 460 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 60/116 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++++ ++++ + R + L GY S A ++ + L++TDI MP MDG+ Sbjct: 5 KRVMVIDNEEGLCRMMEAVLLDNGYRTKSYLRSFEAVEEFEAGQWDLVVTDIKMPVMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ +R DP + V+ +T +A V ++ + +L+KPF +L+ V L Sbjct: 65 EVLQRLKVKDPAIPVIMVTAYATVEMSIQALRRGAYDMLTKPFEPEELLYRVKNAL 120 >gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] Length = 755 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +L+ +DD D+ R ++ AL + G+ V +G A + R ++ D++MP DG Sbjct: 507 SRTVLVVDDDPDIVRIIMLALEREGFHAVGATSGEQALEIARSRHVDVITLDLMMPGADG 566 Query: 62 IELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +++ R+ DP D+ V+ ++ + A P+ A + +++KP DL+ + +L Sbjct: 567 VQVLRQLKH-DPATRDIPVVVVSAYGA-GKEPELVATGVSGIVAKPIDENDLLATIRTVL 624 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+RR + L +AGY V + +G A+ + E LL+ D++MP +DG +L Sbjct: 636 ILVVDDDPDVRRIVSVMLERAGYAVRTAQDGQEAFRMIMAERPDLLILDLMMPNLDGFQL 695 Query: 65 AR 66 R Sbjct: 696 VR 697 >gi|22297889|ref|NP_681136.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294067|dbj|BAC07898.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 121 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED R + + L K G+EV +G A +++++ +++ DIVMP M+G E Sbjct: 3 KVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + R+ DP + + + ++ D ++KPF ++LV + +LL Sbjct: 63 VCRQIKS-DPRTQSIPVVMCSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLL 119 >gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 230 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ EDD +R L L K GY++ +G A R +L++ D+++P +DG Sbjct: 3 EHKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R + + ++ +T ++ A + LSKPF +++L+ + LL Sbjct: 63 FELC-RLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALL 118 >gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1119 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED + L KAG+++ NG A V E+PF L+L D+ MPEMDG+E Sbjct: 877 ILLAEDSPANQIIAGTMLTKAGFDITYACNGLEAVKLVAEKPFDLVLMDVRMPEMDGLEA 936 Query: 65 ARRATELDPDLKVMFITG 82 + P+ ++ ++ Sbjct: 937 TEVILQNHPEQVILAMSA 954 >gi|22127735|ref|NP_671158.1| hypothetical protein y3864 [Yersinia pestis KIM 10] gi|108809784|ref|YP_653700.1| putative hybrid two-component system regulatory protein [Yersinia pestis Antiqua] gi|108813774|ref|YP_649541.1| hybrid two-component system regulatory protein [Yersinia pestis Nepal516] gi|150261078|ref|ZP_01917806.1| putative hybrid two-component system regulatory protein [Yersinia pestis CA88-4125] gi|165926941|ref|ZP_02222773.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165936852|ref|ZP_02225418.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|166009542|ref|ZP_02230440.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166213430|ref|ZP_02239465.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167400568|ref|ZP_02306077.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421127|ref|ZP_02312880.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426511|ref|ZP_02318264.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468067|ref|ZP_02332771.1| hybrid two-component system regulatory protein [Yersinia pestis FV-1] gi|218930961|ref|YP_002348836.1| putative hybrid two-component system regulatory protein [Yersinia pestis CO92] gi|229839664|ref|ZP_04459823.1| putative hybrid two-component system regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841747|ref|ZP_04461903.1| putative hybrid two-component system regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904285|ref|ZP_04519396.1| putative hybrid two-component system regulatory protein [Yersinia pestis Nepal516] gi|270488108|ref|ZP_06205182.1| PAS domain S-box [Yersinia pestis KIM D27] gi|294504309|ref|YP_003568371.1| putative hybrid two-component system regulatory protein [Yersinia pestis Z176003] gi|21960858|gb|AAM87409.1|AE013990_7 hypothetical [Yersinia pestis KIM 10] gi|108777422|gb|ABG19941.1| hybrid two-component system regulatory protein [Yersinia pestis Nepal516] gi|108781697|gb|ABG15755.1| putative hybrid two-component system regulatory protein [Yersinia pestis Antiqua] gi|115349572|emb|CAL22546.1| putative hybrid two-component system regulatory protein [Yersinia pestis CO92] gi|149290486|gb|EDM40563.1| putative hybrid two-component system regulatory protein [Yersinia pestis CA88-4125] gi|165915094|gb|EDR33705.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|165921047|gb|EDR38271.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165991464|gb|EDR43765.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166205371|gb|EDR49851.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|166961256|gb|EDR57277.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049936|gb|EDR61344.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054499|gb|EDR64307.1| sensory box histidine kinase/response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678403|gb|EEO74508.1| putative hybrid two-component system regulatory protein [Yersinia pestis Nepal516] gi|229691086|gb|EEO83139.1| putative hybrid two-component system regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696030|gb|EEO86077.1| putative hybrid two-component system regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|262363670|gb|ACY60391.1| putative hybrid two-component system regulatory protein [Yersinia pestis D106004] gi|262367601|gb|ACY64158.1| putative hybrid two-component system regulatory protein [Yersinia pestis D182038] gi|270336612|gb|EFA47389.1| PAS domain S-box [Yersinia pestis KIM D27] gi|294354768|gb|ADE65109.1| putative hybrid two-component system regulatory protein [Yersinia pestis Z176003] gi|320017292|gb|ADW00864.1| putative hybrid two-component system regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 851 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 +Q +L+ ED+ D+R+ L + L + GY + + A + + P S++++D+++P +M Sbjct: 737 DQLVLVLEDEPDVRQTLCEQLHQLGYLTLETGDSRQALALMADVPDISIVISDLMLPGDM 796 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ ++A + P LK++ I+G L N ++L KPF+ + LV + R+ Sbjct: 797 TGAEVLQQARSVYPHLKLLLISG---QDLRRSKNFMPEVELLRKPFNQQQLVQALQRV 851 >gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W] gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W] gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P + Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|332995295|gb|AEF05350.1| response regulator [Alteromonas sp. SN2] Length = 442 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 63/111 (56%), Gaps = 1/111 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +D+ ++ R + +AL ++ ++GA A + ++E ++++D+ MP+M G EL Sbjct: 14 VLFVDDEPNILRAIKRALFSLKVNLLLADSGAKALEIMKENEVHVIISDMKMPQMSGAEL 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEV 114 ++ EL P+ + +TG+A + + N K + L KP+ ++L++ + Sbjct: 74 LQQVAELYPESYRLVLTGYADIESTIKAVNEGKIHRYLQKPWDNKELISAI 124 >gi|315125284|ref|YP_004067287.1| two-component response regulator [Pseudoalteromonas sp. SM9913] gi|315013797|gb|ADT67135.1| two-component response regulator [Pseudoalteromonas sp. SM9913] Length = 461 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L +DD +R L KAL +AG+EV S + + + ++ S+L++D+ MP MDG+ L Sbjct: 5 WLVDDDASIRFVLEKALTRAGFEVESFADAQNVLNALKFSQPSVLISDVRMPGMDGMALL 64 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLV 111 E P L V+ +T A L+ NA + + L+KPF L + V Sbjct: 65 ELIAEQTPGLPVIIMT--AHSDLDSAVNAFQKGAFEYLAKPFDLNEAV 110 >gi|302036900|ref|YP_003797222.1| transcriptional regulatory protein CusR [Candidatus Nitrospira defluvii] gi|300604964|emb|CBK41297.1| Transcriptional regulatory protein CusR [Candidatus Nitrospira defluvii] Length = 227 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 49/102 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD D+ +F+ K L + Y V +NG ++ P+ L++ DI++P +DG+ Sbjct: 2 RILLVEDDADLAQFIRKGLKEERYAVDVASNGEQGFELGIANPYDLIILDIMLPVLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 L RR V+ +T V L+KPF Sbjct: 62 LCRRLRSTGVTAPVLLLTARDTVQDKVSGLDLGADDYLTKPF 103 >gi|293611006|ref|ZP_06693305.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826658|gb|EFF85024.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 1501 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ L+L DI MP MDG E+ Sbjct: 1378 IMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEV 1437 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L D+ V+ IT + + + KPF DL++ ++ L Sbjct: 1438 LNLVRHHDLHQDIPVIMITSRTGEKHRERAFTLGVNQYMGKPFQEEDLLHNIDALF 1493 >gi|264678304|ref|YP_003278211.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni CNB-2] gi|262208817|gb|ACY32915.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni CNB-2] Length = 716 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 10 DDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGIELAR 66 DDD FL + L + GYEV + A + EEP F L++TD MP G++L R Sbjct: 603 DDDQALVFLFQRLLRRRGYEVSGFTDPHEAMAALHEEPQRFDLIVTDYNMPGFSGLDLLR 662 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A +++P L V +G+ + + A ++ KP +++ V+ LL Sbjct: 663 QALQINPQLPVALASGYVTAEIEQAAIAAGARALIHKPNDVQEFCATVHELL 714 >gi|290960640|ref|YP_003491822.1| thioredoxin reductase [Streptomyces scabiei 87.22] gi|260650166|emb|CBG73282.1| putative thioredoxin reductase [Streptomyces scabiei 87.22] Length = 572 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 14/102 (13%) Query: 5 ILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVM 56 I+ +DD + R + + L + A Y +V +G SA + +RE +P +++L D M Sbjct: 26 IMTVDDDPGVSRAVARDLRRRYGASYRIVRAESGESALEALRELKLRGDPVAVILADYRM 85 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 P+M+GIE +A +L P + + +T +A DSNA +A Sbjct: 86 PQMNGIEFLEQALDLYPGARRVLLTAYA------DSNAAIDA 121 >gi|238794125|ref|ZP_04637741.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC 29909] gi|238726523|gb|EEQ18061.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC 29909] Length = 221 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 +L ED ++ +L KAL AG+ V N+G +A ++ E ++L++ D+ +P ++G++L Sbjct: 1 MLVEDHPELSHWLQKALTHAGFAVDVANDGVAADHLLQNENYTLVVLDVALPRLNGLDLL 60 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + L V+ +T VA L+KPF + +L + LL Sbjct: 61 ARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFEMDELEARIRALL 113 >gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P + Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 236 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GIELARR 67 G+ + +R Sbjct: 71 GLHVLQR 77 >gi|256828150|ref|YP_003156878.1| Fis family two component sigma5-4 specific transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577326|gb|ACU88462.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfomicrobium baculatum DSM 4028] Length = 445 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KIL+ +D+ ++R+ L L G+ V++ +N A A ++ R F + D+ + E Sbjct: 1 MNELKILIVDDETNIRKTLSYCLAAEGHTVIAVSNPADAMEESRLRVFDMAFVDLKLGEE 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 DG++L P +KV+ IT A++ D+ A L+KPF Sbjct: 61 DGMDLIPALLADSPWIKVVVITAHASIESVVDAMRRGAADYLAKPF 106 >gi|196231754|ref|ZP_03130611.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196224226|gb|EDY18739.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 550 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D + + + L G+ V + +G A +K + + L++TD+ MP M+G + Sbjct: 414 KILFVDDQPIISELVSELLRSDGHAVDTAGSGGLALEKCQRVNYDLVITDLAMPGMNGGQ 473 Query: 64 LARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LA +L+P ++ +TGFA + P +N +VL+KP L +L + + T Sbjct: 474 LAGVLRQLNPAKPIIMLTGFADLVGEAGPGTNI---DRVLAKPASLEELRRAIFEVFT 528 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 11 DDDMRR-FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 DDD+R LI+ + + ++V N+ ++ +LL DI MP MDG E+ R+ Sbjct: 17 DDDVRSSLLIERMLRGHFQVHIVNDERETFEAFERLHPDILLLDIYMPHMDGFEIMRKLR 76 Query: 70 E 70 E Sbjct: 77 E 77 >gi|196232630|ref|ZP_03131482.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196223392|gb|EDY17910.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 572 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 Q+IL +D+ + + ++L GY V A + +R P F ++TD+ MP M Sbjct: 439 GQRILFVDDEAPLVYLVTESLKFLGYHVSGFTRPEEALEALRAAPGNFDFMITDLSMPVM 498 Query: 60 DGIELARRATELDPDLKVMFITGF 83 G LAR+A ++ PDL ++ TG+ Sbjct: 499 PGPVLARQALQIRPDLPIVIATGY 522 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R+ L L G+EV +G A + E+ +++DI+MP MDG L Sbjct: 3 ILIVEDNPTNRKLLHVTLAGEGHEVFEAGDGEEALAALAEQRADAIISDILMPNMDGYRL 62 Query: 65 A---RRATELDPDLKVMFITG 82 RR T+ +L +F T Sbjct: 63 CYEIRRHTDWR-NLPFIFYTA 82 >gi|307153868|ref|YP_003889252.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306984096|gb|ADN15977.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 137 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAEDD + + L GY ++ NNG A +K ++ L+L DI MP+MDG++ Sbjct: 21 ILLAEDDFMNQLTICDYLEVFGYSLIVANNGIEAVEKAQQVQPKLILMDISMPKMDGLQ- 79 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLV 111 A A P+L I A A+ D A ++KP +DLV Sbjct: 80 AIAAIRQIPELVNTPIIALTAFAMKGDQEKCLTAGANYYVTKPIKFKDLV 129 >gi|161505495|ref|YP_001572607.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866842|gb|ABX23465.1| hypothetical protein SARI_03654 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 469 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG ++ NG A + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCIAFENGNEALAALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|197121391|ref|YP_002133342.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171240|gb|ACG72213.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 466 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 53/106 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R+ L G+EV+ ++GA A ++ E +++D+ MP++DGI L Sbjct: 9 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R L P L V+ +T A V ++ L+KP +L Sbjct: 69 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDEL 114 >gi|150002623|ref|YP_001297367.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|237712435|ref|ZP_04542916.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237726625|ref|ZP_04557106.1| two-component system response regulator [Bacteroides sp. D4] gi|254881412|ref|ZP_05254122.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|265752137|ref|ZP_06087930.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|294776097|ref|ZP_06741590.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|319642799|ref|ZP_07997437.1| transcriptional regulatory protein rprY [Bacteroides sp. 3_1_40A] gi|149931047|gb|ABR37745.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|229435151|gb|EEO45228.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229453756|gb|EEO59477.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|254834205|gb|EET14514.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|263236929|gb|EEZ22399.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|294450048|gb|EFG18555.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|317385543|gb|EFV66484.1| transcriptional regulatory protein rprY [Bacteroides sp. 3_1_40A] Length = 232 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+++ L + L GY C +G + Y + + L + D++MP+ DG Sbjct: 6 RILLCEDDENLGMLLREYLQAKGYSAELCPDGEAGYKAFLKNKYDLCVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +L + +L Sbjct: 66 LAQEIRQANAEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELTFRIEAIL 120 >gi|94263464|ref|ZP_01287277.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456194|gb|EAT06333.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 231 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 19/130 (14%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ +IL+ +DD M R + + G+ + S +G SA + F L++ D+ +P+ Sbjct: 1 MNRIRILVVDDDPSMLRLCQVVIQRQGWLIESAQDGGSAEGLLATRSFDLVVLDLNLPDG 60 Query: 60 DGIELARRATELDPDLKVMF--------ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 DG+++ RR + +M + GF A A L+KPFH +L+ Sbjct: 61 DGLDIGRRLYQQGVPFLLMTARDRPNERVAGFEVGA----------ADYLTKPFHPNELI 110 Query: 112 NEVNRLLTIK 121 + + R+L ++ Sbjct: 111 HRIRRVLGLR 120 >gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea] gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea] Length = 243 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ +RR L L GYEV++ +NG A R+E SL++ D++MP++DG Sbjct: 6 EKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGY 65 Query: 63 ELARRATELDPDLKVMFITGFAAVA 87 + + + + D+ ++ +T V Sbjct: 66 GVCQELRK-ESDVPIIMLTALGEVC 89 >gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645] gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645] Length = 954 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++L ED R+ + L K G+ VV +NG A +K R++ F ++L D+ MP MDG++ Sbjct: 703 RVMLVEDTAANRKLVTSLLKKRGHIVVEAHNGREALEKFRDDEFDVILMDVQMPIMDGLQ 762 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 A R E + + I A A+ D A + +SKP + DL+ + L Sbjct: 763 TTAAIRQIEREEGYEPTPIIAMTAHAMQGDREKCLGAGMDAYISKPIDIDDLLATLESL 821 >gi|238797625|ref|ZP_04641121.1| Nitrogen regulation protein NR(I) [Yersinia mollaretii ATCC 43969] gi|238718489|gb|EEQ10309.1| Nitrogen regulation protein NR(I) [Yersinia mollaretii ATCC 43969] Length = 470 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG S ++G D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLSCASFDSGNQVLDALATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1] gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92] gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92] gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] Length = 235 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 44/79 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ +R L++ L GY ++ NG A R++ ++ DI+MPE+D + Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDSYK 61 Query: 64 LARRATELDPDLKVMFITG 82 + R + D ++F++ Sbjct: 62 VCREIRKHDWQTPIIFLSA 80 >gi|309795016|ref|ZP_07689436.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7] gi|308121320|gb|EFO58582.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7] Length = 904 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|302796211|ref|XP_002979868.1| hypothetical protein SELMODRAFT_450936 [Selaginella moellendorffii] gi|300152628|gb|EFJ19270.1| hypothetical protein SELMODRAFT_450936 [Selaginella moellendorffii] Length = 865 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDG 61 K+LL EDDD R + L GYEV +G A++ + R L+LTD++MP + G Sbjct: 110 KVLLVEDDDSTRHVVAALLRNCGYEVTPAASGLQAWEILETRSSSVDLVLTDLMMPRLSG 169 Query: 62 IEL 64 IEL Sbjct: 170 IEL 172 >gi|254294022|ref|YP_003060045.1| Fis family trnascriptional regulator [Hirschia baltica ATCC 49814] gi|254042553|gb|ACT59348.1| two component, sigma54 specific, transcriptional regulator, Fis family [Hirschia baltica ATCC 49814] Length = 457 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM--PE 58 M +IL+ +D+ D+R + L GY+V + + + D VRE +L+L D+ + E Sbjct: 1 MAFEILVVDDETDIRELVGGILEDEGYKVRTAADAKQSMDAVRERAPNLVLLDVWLKGSE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E+ ELDP++ ++ ++G V + L KPF+ L+ V R L Sbjct: 61 FDGLEILSMLKELDPNMPIIIMSGHGTVETAVTAIRNGAYDYLEKPFNSDKLLVLVQRAL 120 >gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P + Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 211 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A V++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALTFVQKEKPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRIKQYDETIKILMLSSFS 86 >gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM 5476] gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM 5476] Length = 1068 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 + +LL ED+ R ++ L G EV +G A + + P + L+L DI MP M Sbjct: 942 KHLLLVEDNQLNREIAVELLRITGAEVECAKDGIEAVELFSQSPVEHYDLILMDIQMPRM 1001 Query: 60 DGIELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 DG+E R+ +LD PD + I A A D + K A + LSKP ++ L ++ Sbjct: 1002 DGLEATRQIRKLDRPDAGSVPIVAMTANAFAEDEHKSKAAGMNAHLSKPLDIKILFAQMK 1061 Query: 116 RLL 118 L Sbjct: 1062 VFL 1064 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPE 58 K+L +DD D ++ L + G +V NG A +VR +E F + +P+ Sbjct: 803 KVLAVDDDPDTISYIHSLLHRMGVQVECAENGNLAVSQVRDAHSRQEDFDICFVSCRLPD 862 Query: 59 MDGIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +DG E RR E+ P + + IT + A + ++ + VL+KP + ++ L Sbjct: 863 LDGFETTRRIHEIVPNETTAVLITAYDAAEIEKEAAQSGASGVLAKPLFASTITQTISSL 922 >gi|189460890|ref|ZP_03009675.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136] gi|189432464|gb|EDV01449.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136] Length = 1318 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 17/126 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62 +L+ +D+DD R F+ +LG Y V +NG A+D ++ EE L+++DI+MPEMDG Sbjct: 1070 LLIVDDNDDFRLFMEYSLGLQ-YRVKLASNGKEAWDILQNSEEMPDLVVSDIMMPEMDGN 1128 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL--------SKPFHLRDLVNEV 114 EL R E D + I + L+ N + L +KPF++ LV + Sbjct: 1129 ELCRLIKE---DKRTAHI---PVILLSAKQNTESKVEGLTMGADDYVTKPFNMTILVLRI 1182 Query: 115 NRLLTI 120 +L+ + Sbjct: 1183 RKLIEL 1188 >gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7] gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7] Length = 241 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+D +RR L L + Y V +NG A E + L+L D+++P+MDGIE+ Sbjct: 8 LLVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLMLPKMDGIEV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A + E D +M +T + + KPF R++V V+ +L Sbjct: 68 AGKIREAK-DTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAIL 120 >gi|319424630|gb|ADV52704.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 219 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ LI AL KAGY V +NG EE F ++ D+ +P G++ Sbjct: 2 RLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLSEEENFEAVILDLGLPGKPGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T A D L KPFH+ +L+ + L+ Sbjct: 62 VLSQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLI 116 >gi|157960131|ref|YP_001500165.1| response regulator receiver modulated serine phosphatase [Shewanella pealeana ATCC 700345] gi|157845131|gb|ABV85630.1| response regulator receiver modulated serine phosphatase [Shewanella pealeana ATCC 700345] Length = 400 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 M ++ILL ED+ M+ + K L GY+VV+ +G A ++ + P L+L+D +MP++ Sbjct: 1 MGKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKL 60 Query: 60 DGIELARRATELDPDLKVMFI 80 +GIEL D + F+ Sbjct: 61 NGIELCYHLKSSDYGRYIFFV 81 >gi|73855027|gb|AAZ87734.1| sensor protein torS [Shigella sonnei Ss046] Length = 904 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|148545818|ref|YP_001265920.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148509876|gb|ABQ76736.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 230 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LLAEDD + + L + G++V +C +G A + +++ F L+L DI++P +D Sbjct: 1 MPTSLLLAEDDPRLLQDLDRHFRNRGFQVHACASGTQALNAIQQSQFELVLLDIMLPGID 60 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L A R + P VM ++ A L KPF L +L V+ LL Sbjct: 61 GLSLLDALRRQQAVP---VMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARVDALL 117 >gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 230 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ + RFL GY V +G S + E + L+L DI++P +D Sbjct: 2 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G E+ ++ E D+ V+ +T V + ++KPF + +L V Sbjct: 62 GFEVLKKIRE-HSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVR 115 >gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 250 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 64/124 (51%), Gaps = 7/124 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDI 54 +IL+ ED++ +R L+ AL GYE+++ +G +A + ++ E PF L++ D+ Sbjct: 18 TSRILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDL 77 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++P+++G+++ R + ++ ++ + L+KPF +R+LV Sbjct: 78 MLPQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 NRLL 118 LL Sbjct: 138 RALL 141 >gi|288870045|ref|ZP_06112733.2| Two-component response regulator YesN [Clostridium hathewayi DSM 13479] gi|288868584|gb|EFD00883.1| Two-component response regulator YesN [Clostridium hathewayi DSM 13479] Length = 305 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 22 LGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 + G+E+ C +NG +AY+ L+L+DI MP MDG+EL+ + E D+K++F Sbjct: 75 WSQLGFEIAGCFSNGKAAYEYTLANHVDLVLSDIRMPIMDGLELSEKLLE-KRDIKIIFF 133 Query: 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +G+ + L KP DLV+ + R+ Sbjct: 134 SGYQDFEYVRRALRTGVVDYLLKPVKYEDLVDCLTRI 170 >gi|322421716|ref|YP_004200939.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320128103|gb|ADW15663.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 455 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 54/116 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +D+ R L L K GY + + +G A ++ + + LLLTD+ M + Sbjct: 1 MSGSILIVDDEKGQRDILSAILSKKGYRIHAVPSGEEALQELEQSEYDLLLTDLKMQGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+EL R +P ++ +T + ++ L+KP DL+ V R Sbjct: 61 GMELMERVLSDNPSQCMVMMTAHGTIDSAVEAMKMGAFDYLAKPLEREDLILTVQR 116 >gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330] gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12] gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330] gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12] Length = 236 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+A+DD ++ L + GYE V +G A K+R P LL+ DI+MPEMDG+ Sbjct: 9 KILIADDDKEIVELLSIYIHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 68 Query: 63 ELAR 66 ++ + Sbjct: 69 QVVK 72 >gi|225378431|ref|ZP_03755652.1| hypothetical protein ROSEINA2194_04099 [Roseburia inulinivorans DSM 16841] gi|225209654|gb|EEG92008.1| hypothetical protein ROSEINA2194_04099 [Roseburia inulinivorans DSM 16841] Length = 491 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 + +L+ ED+ +R+ + + ++G ++ CNNG +A + ++E+ ++ TDI MP+M Sbjct: 2 KTVLIVEDEKMIRQGIKTMIMRSGVPIETIMECNNGETALEILKEQEIDVMFTDIRMPKM 61 Query: 60 DGIELARRATELDPDLKVMFITGF 83 DGIEL ++ L+ + I+G+ Sbjct: 62 DGIELVQKMQSLEHIPLTVAISGY 85 >gi|197106120|ref|YP_002131497.1| FOG: PAS/PAC domain protein [Phenylobacterium zucineum HLK1] gi|196479540|gb|ACG79068.1| FOG: PAS/PAC domain protein [Phenylobacterium zucineum HLK1] Length = 795 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDG 61 +IL+ ED+ ++ L + G+ V A+A + E E L+ +DIVM E+DG Sbjct: 651 RILVVEDNPEVAEVAAAMLEQLGHTVRVVGGAAAAMSALHEHETPDLVFSDIVMAGEIDG 710 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + LARR E P + V+ TG++ A P +L KP+ L +L V LL Sbjct: 711 LGLARRVREEAPSVPVLLATGYSQAAEQLGDEFP----ILRKPYKLGELSRAVGVLL 763 >gi|253700150|ref|YP_003021339.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M21] gi|251775000|gb|ACT17581.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M21] Length = 316 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 54/110 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ +R + + L G+ V +G A + R L++TDI M M GIEL Sbjct: 3 LLVVDDEETLRSVVSQVLSADGFTVAEAASGEEALEAFRSVSHPLVITDIRMGGMTGIEL 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E +PD +V+ +T A++ + L KPF DL++ V Sbjct: 63 LAEIKEHNPDTQVVIMTSHASLDSALTALRAGAYDYLVKPFESLDLISAV 112 >gi|182412781|ref|YP_001817847.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177839995|gb|ACB74247.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 372 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D + R L L GY++V +G A ++ P L+L D++MP +DG E Sbjct: 12 RILVVDDQETNLRVLGDMLAHLGYDIVPALDGEQALRRLSSRPVDLILLDVLMPGLDGFE 71 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R R+ D+ ++F++ +L + ++KPF+ +L++ V L +K Sbjct: 72 VCRRIRSNVAWIDIPIIFLSAADDKSLIVRALESGGVDYITKPFNAAELLSRVRTHLALK 131 Query: 122 N 122 Sbjct: 132 T 132 >gi|119471376|ref|ZP_01613848.1| chemotaxis response regulator [Alteromonadales bacterium TW-7] gi|119445652|gb|EAW26936.1| chemotaxis response regulator [Alteromonadales bacterium TW-7] Length = 120 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL +D MR+ + L AG++V +G+ A +++ F +++D+ MP MDGI Sbjct: 2 KKILAVDDSASMRQMVSFTLKTAGFDVTEAKDGSEALAIAKQQGFDAVISDVNMPIMDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R L PD K ++ +T + + + A + KPF+ L+ + +++ Sbjct: 62 TLIRELRTL-PDYKFTPLLMLTTESGLEKKVEGKAAGATGWIVKPFNPEQLLAVIKKVI 119 >gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 226 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 7/90 (7%) Query: 6 LLAEDDDDMRRFLIKA--LGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L DD ++ R I A + + G EV+ +GA+A D V P L++ D+ MP MDGI Sbjct: 16 VLIVDDHELARAGIAAVLMREPGIEVIGEAGDGAAALDFVSRHPVDLVMMDLQMPGMDGI 75 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDS 92 E RR L P ++V+ +T V PD+ Sbjct: 76 EATRRIKALCPAIRVIMVT----VQAKPDA 101 >gi|94968616|ref|YP_590664.1| two component, sigma54 specific, Fis family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550666|gb|ABF40590.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Koribacter versatilis Ellin345] Length = 458 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 46/83 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED D+R L AL + GY V+ N A + ++ FS +LTD+ +P G+++ Sbjct: 4 ILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSGMDV 63 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 A + DP + V+ +T F +A Sbjct: 64 LSAALDSDPMVPVVVMTAFGTIA 86 >gi|91203171|emb|CAJ72810.1| similar to two-component response-regulator (transcription regulator) [Candidatus Kuenenia stuttgartiensis] Length = 144 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 8/122 (6%) Query: 1 MNQKILLAEDDDD-----MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 M QK +L DD+ ++R L + K GY V ++G + ++ E L++T+ Sbjct: 1 MKQKTILIVDDEKNILATLKRILEEE--KEGYRVFFADSGIKGLEILKCENIHLIITNYR 58 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAV-ALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 MP MDG+++ +RAT L PD +TG+A + + N + +KP+ +++ V Sbjct: 59 MPGMDGLQVLKRATMLSPDAVKFMLTGYADLDVVMKAKNEGGVYRFFTKPWSNNEILGAV 118 Query: 115 NR 116 + Sbjct: 119 KQ 120 >gi|89072515|ref|ZP_01159087.1| putative aerobic respiration control protein FexA [Photobacterium sp. SKA34] gi|89051619|gb|EAR57072.1| putative aerobic respiration control protein FexA [Photobacterium sp. SKA34] Length = 239 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R L GY V N+GA + + E P L++ DI +P +G+ L Sbjct: 6 ILIVEDEHVTRNTLKSIFEAEGYTVFEANDGAEMHQMLSENPVHLVIMDINLPGKNGLLL 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 AR E D+ +MF+TG + + D ++KPF+ R+L L Sbjct: 66 ARELRE-QGDMALMFLTGRDNEVDKILGLEIGADD-------YITKPFNPRELTIRARNL 117 Query: 118 LT 119 LT Sbjct: 118 LT 119 >gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] Length = 224 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + L AL K Y V ++G S + E P L + D+ +P+M+GIE Sbjct: 2 RILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHLTEYPLDLAVIDLGLPKMNGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +RA +L ++ +T + L+KPFH +L+ N L+ Sbjct: 62 VIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALI 116 >gi|328873792|gb|EGG22158.1| hypothetical protein DFA_04276 [Dictyostelium fasciculatum] Length = 330 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 4/104 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 IL+AED+ ++ +++ L K GY+++ ++G D + E FSL+L D MPEMDG Sbjct: 167 ILVAEDNLINQKIIVRQLDKLGYDMIVGSDGNKVLDILNSEDYNFSLILMDCQMPEMDGF 226 Query: 63 ELARRATELDPDLKVMFITGFAA--VALNPDSNAPKNAKVLSKP 104 E +R +L+P + + I A A S A L KP Sbjct: 227 ECSRIIRQLEPKGQRIPIIAMTANSTAAEDQSKASGMDDYLPKP 270 >gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 232 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 46/79 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ +RRF+ L AGY V +G A DK++ +++ DI++P +DG E Sbjct: 7 KILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLPGIDGFE 66 Query: 64 LARRATELDPDLKVMFITG 82 + + P+ +V+ +T Sbjct: 67 VCQHICATMPETRVIMLTA 85 >gi|323174897|gb|EFZ60512.1| TMAO reductase sytem sensor TorS [Escherichia coli LT-68] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|309775541|ref|ZP_07670541.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 3_1_53] gi|308916635|gb|EFP62375.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 14/119 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+D++R+ + L KA +++V C +G +A + +E F +L+ D ++P + GI+ Sbjct: 3 RILLIEDEDNIRKIIAYDLKKADFDIVECADGKTAVELAMKEDFDVLIIDWMLPHVSGID 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + ++ D + +T A D ++KPF R+L+ VN Sbjct: 63 IVKKLRNEHIDAIFIMLTARDDETDILYAFEQGVDD-------YITKPFSPRELLARVN 114 >gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 838 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ R K L KAGY V +G + E PF +L DI MP +G+E Sbjct: 710 RILLAEDEAINRLAAQKMLEKAGYAVTPAGSGEEILRLLAERPFDCILMDIRMPGKNGLE 769 Query: 64 LARR---ATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 + R + L P + + I A A++ D A +SKP + L+ E+ R+ Sbjct: 770 VTREIRHSPRLGP-MAAIPIIAVTAYAMSGDREKFLAAGMDGYVSKPIDIAHLMEELKRI 828 Query: 118 LT 119 ++ Sbjct: 829 MS 830 >gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 804 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 9/102 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED++ + +AL K GY+ +NG ++++ E F ++L DI MPE+DGIE Sbjct: 677 RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103 + R+ + + ++ +AL D+ K +SK Sbjct: 737 ATKWIRSKNQNSEFPII-------IALTADAIESSKEKYISK 771 >gi|293433288|ref|ZP_06661716.1| TMAO reductase system sensor TorS [Escherichia coli B088] gi|291324107|gb|EFE63529.1| TMAO reductase system sensor TorS [Escherichia coli B088] Length = 914 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|255263102|ref|ZP_05342444.1| response regulator [Thalassiobium sp. R2A62] gi|255105437|gb|EET48111.1| response regulator [Thalassiobium sp. R2A62] Length = 401 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++AED + R +L L G+E + +G A +++ ++L+D+ MP ++GI+ Sbjct: 7 KIIVAEDSEIQRLYLCSLLDAMGHETIPAEDGQQALALLQDSKAQIVLSDLQMPNLNGID 66 Query: 64 LAR--RATELDPDLKVMFITG 82 L R RA +LD + V+ ITG Sbjct: 67 LTRSIRALDLDRYVHVIVITG 87 >gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1265 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 7/121 (5%) Query: 4 KILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+LL ED+D + +KAL K GY V+ +G A + + + L+L DI MP MDG+ Sbjct: 1143 KVLLVEDED-INVVTVKALLKKHGYAVIVATDGQQAIEVLSGKEIDLVLMDIRMPIMDGV 1201 Query: 63 E--LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 + LA R+ + D K + I A A+ D A ++KP ++DL + R+ Sbjct: 1202 QATLAIRSGKAGQDKKDVPIIAMTAYAMTGDREKFLAAGMNDYIAKPVDIQDLKEVIKRV 1261 Query: 118 L 118 L Sbjct: 1262 L 1262 >gi|296127555|ref|YP_003634807.1| response regulator receiver protein [Brachyspira murdochii DSM 12563] gi|296019371|gb|ADG72608.1| response regulator receiver protein [Brachyspira murdochii DSM 12563] Length = 130 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 54/118 (45%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D++ +R + EVV+ NG SA + P +++TD++MP M G+ L Sbjct: 8 ILAVDDEEPIRDLITYTFEPHNLEVVTAENGKSAITILEHNPVDVIITDLLMPSMTGLAL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R + + ++ IT + + + A +++ KP LV V + KN Sbjct: 68 IREMKKRKSSIPIIIITAYGNTEMVKEIIAEGVFRLIEKPLDFDVLVPIVQEAIEYKN 125 >gi|257792299|ref|YP_003182905.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317490222|ref|ZP_07948710.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325833586|ref|ZP_08166035.1| DNA-binding response regulator [Eggerthella sp. HGA1] gi|257476196|gb|ACV56516.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316910716|gb|EFV32337.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485510|gb|EGC87979.1| DNA-binding response regulator [Eggerthella sp. HGA1] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I EDD ++R + AL +AG+E + +E L+L DI++PE+DG+E+ Sbjct: 2 IYYVEDDTNIRDLTVYALKQAGFEAAGFPAAGEFFAACKERLPELVLLDIMLPEIDGLEI 61 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E +P K + + A D+ + +A L+KPF + +LV+ VN L+ Sbjct: 62 LHMLRE-NPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALM 117 >gi|291288222|ref|YP_003505038.1| two component, sigma54 specific, transcriptional regulator, Fis family [Denitrovibrio acetiphilus DSM 12809] gi|290885382|gb|ADD69082.1| two component, sigma54 specific, transcriptional regulator, Fis family [Denitrovibrio acetiphilus DSM 12809] Length = 473 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 59/120 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ +DDD+MR +++ + + G V +G ++K + + L+++D+ MP +DG Sbjct: 5 SKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMPNVDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + + F+T F V D+ + KPF + V R+L I+ Sbjct: 65 MTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRVLEIE 124 >gi|212691065|ref|ZP_03299193.1| hypothetical protein BACDOR_00555 [Bacteroides dorei DSM 17855] gi|212666297|gb|EEB26869.1| hypothetical protein BACDOR_00555 [Bacteroides dorei DSM 17855] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+++ L + L GY C +G + Y + + L + D++MP+ DG Sbjct: 9 RILLCEDDENLGMLLREYLQAKGYSAELCPDGEAGYKAFLKNKYDLCVLDVMMPKKDGFT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +L + +L Sbjct: 69 LAQEIRQANAEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELTFRIEAIL 123 >gi|182414885|ref|YP_001819951.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842099|gb|ACB76351.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1222 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 5/116 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMD 60 + +L+ ED++ +R L +AL + Y V++ ++GA A + S L++TD +MP MD Sbjct: 1091 EAVLVIEDEEAIRSMLQRALTQHNYRVLTASDGAEALGVYAQNAGSIDLVITDAMMPVMD 1150 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNE 113 G + AR D L ++ I+G A + L KPF H LV E Sbjct: 1151 GAQTARALRGRDRSLPIIAISGLPAQRAELEKIPGPRIHFLPKPFATDHALHLVRE 1206 >gi|167770204|ref|ZP_02442257.1| hypothetical protein ANACOL_01547 [Anaerotruncus colihominis DSM 17241] gi|167667526|gb|EDS11656.1| hypothetical protein ANACOL_01547 [Anaerotruncus colihominis DSM 17241] Length = 122 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ KI+L +D MR + L KAGY ++ +GA A D +E L++ DI MP Sbjct: 3 MDSKIMLVDDAAFMRMTIKNCLTKAGYTNLIEAGDGAQAVDTFAKEHPDLVIMDITMPNK 62 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGI+ + +D KV+ + A+ + + KPF ++ V+++L Sbjct: 63 DGIQALQEIKAIDGGAKVVMCSAMGQEAMVVQAIQFGALDFIVKPFKPDRILQTVSKIL 121 >gi|218529508|ref|YP_002420324.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218521811|gb|ACK82396.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1164 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L GY VV + A V E F LL+TD +MP M G +L Sbjct: 1053 LLVDDEEVVRISTADMLTDLGYAVVEATSAEEALRLVNTGEHFDLLVTDHLMPGMSGTDL 1112 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 AR P + V+ ++G+A ++PD L+KPF +L + + +L+T Sbjct: 1113 ARAIRTAKPGMPVLLVSGYAEREGVDPD------LARLNKPFRKDELASSLAQLMT 1162 >gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 234 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY+ +G A +K + E + +++ D++MP MDGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 SMRRIRE 71 >gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++ +L + L G+ V ++G + RE P L++ DI++P MDG E Sbjct: 9 RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGFE 68 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR D+ ++ +T V + +S A L KPF +L+ + LL Sbjct: 69 VCRR-LRAGSDVPIIMLTAKETVPDRVMGLESGAD---DYLIKPFAFEELLARIRALL 122 >gi|113866571|ref|YP_725060.1| response regulator [Ralstonia eutropha H16] gi|113525347|emb|CAJ91692.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 229 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDDD + L ++L +GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDDVLADGLTRSLRHSGYAVDHVTNGLEADSALSTQTFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R L V+ +T +V ++KPF L +L V L+ Sbjct: 62 VLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALV 116 >gi|90580600|ref|ZP_01236405.1| putative aerobic respiration control protein FexA [Vibrio angustum S14] gi|90438258|gb|EAS63444.1| putative aerobic respiration control protein FexA [Photobacterium angustum S14] Length = 239 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R L GY V N+GA + + E P L++ DI +P +G+ L Sbjct: 6 ILIVEDEHVTRNTLKSIFEAEGYTVFEANDGAEMHQMLSENPVHLVIMDINLPGKNGLLL 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 AR E D+ +MF+TG + + D ++KPF+ R+L L Sbjct: 66 ARELRE-QGDMALMFLTGRDNEVDKILGLEIGADD-------YITKPFNPRELTIRARNL 117 Query: 118 LT 119 LT Sbjct: 118 LT 119 >gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125] gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125] Length = 222 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + R L L GYE + +G+ + + + L+L D+++PE+ G+E Sbjct: 3 RILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + RR DP ++ +T ++ PD + + ++KPF + +L+ V L Sbjct: 63 VLRRIRMTDPVTPIILLTARNSI---PDKVSGLDLGANDYITKPFEIEELLARVRACL 117 >gi|110636785|ref|YP_676992.1| two-component response regulator for zraP [Cytophaga hutchinsonii ATCC 33406] gi|110279466|gb|ABG57652.1| two-component response regulator for zraP [Cytophaga hutchinsonii ATCC 33406] Length = 436 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ EDD +R L K L K G+EV+S + G + + + + +L D+ +P+ +GI Sbjct: 2 EKVLIIEDDISLRTILEKFLQKNGFEVISTDRGKAGLEIITSQHIDFVLLDLRLPDSNGI 61 Query: 63 ELARRATELDPDLKVMFITGF 83 E+ + +L + V+ +T + Sbjct: 62 EILQSIKKLHSHVSVIMMTFY 82 >gi|327543489|gb|EGF29908.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 239 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD R L + LG GY+V + +G SA + + F L+ D++MP G + Sbjct: 3 RILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKNFDLVCLDVMMPMKSGFD 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R D V+FIT + L D +SKPF +++ V Sbjct: 63 VCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADD-------YISKPFGSHEVIARVKA 115 Query: 117 LL 118 +L Sbjct: 116 VL 117 >gi|313496899|gb|ADR58265.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LLAEDD + + L + G++V +C +G A + +++ F L+L DI++P +D Sbjct: 1 MPTSLLLAEDDPRLLQDLERHFRNRGFQVHACASGTQALNAIQQSQFELVLLDIMLPGID 60 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L A R + P VM ++ A L KPF L +L V+ LL Sbjct: 61 GLSLLDALRRQQAVP---VMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARVDALL 117 >gi|312134518|ref|YP_004001856.1| two component transcriptional regulator, arac family [Caldicellulosiruptor owensensis OL] gi|311774569|gb|ADQ04056.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor owensensis OL] Length = 520 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ ED+ R L + + G E+ S NG A + V+ +LL D+ MP MD Sbjct: 3 KLLIVEDEKITRESLETLIPWNELGIGEIKSAKNGQEALETVKNYIPDILLCDVRMPRMD 62 Query: 61 GIELARRATELDPDLKVMFITGFA 84 GIE ++R + P K++FI+G+A Sbjct: 63 GIEFSKRLKNIFPKCKIVFISGYA 86 >gi|297580316|ref|ZP_06942243.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae RC385] gi|297535962|gb|EFH74796.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae RC385] Length = 686 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 568 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + D K + I G+ N+PK Sbjct: 628 EATRLIRGSEHDYKNIPIIGYTG------DNSPK 655 >gi|295703432|ref|YP_003596507.1| chemotaxis protein CheV [Bacillus megaterium DSM 319] gi|294801091|gb|ADF38157.1| chemotaxis protein CheV [Bacillus megaterium DSM 319] Length = 301 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 11/95 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVR---------EEPFSLLL 51 N+KI++AED +RR + L +AGYE NG A++ + + LL+ Sbjct: 173 NKKIVVAEDSPLLRRMIEDTLAQAGYENTEFFENGEEAWNYLSSVIDEGVEISDQVQLLI 232 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 TDI MP+MDG L ++ E +P L ++ + F+++ Sbjct: 233 TDIEMPQMDGHHLTKKVKE-NPQLSILPVIIFSSL 266 >gi|271968062|ref|YP_003342258.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511237|gb|ACZ89515.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 238 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL EDD+ +RR + L + GYEV +G + + R+ LLL D+++P +DGI Sbjct: 11 SLLLVEDDEVIRRTVAMTLERYGYEVSVAGDGLTGLELFRDGRHDLLLLDVMLPALDGIG 70 Query: 64 LARRATE 70 L RR E Sbjct: 71 LCRRVRE 77 >gi|229526828|ref|ZP_04416232.1| sensor histidine kinase CqsS [Vibrio cholerae bv. albensis VL426] gi|229336986|gb|EEO02004.1| sensor histidine kinase CqsS [Vibrio cholerae bv. albensis VL426] Length = 662 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 544 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 603 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + D K + I G+ N+PK Sbjct: 604 EATRLIRGSEHDYKNIPIIGYTG------DNSPK 631 >gi|224368294|ref|YP_002602457.1| putative response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223691010|gb|ACN14293.1| putative response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 463 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ +D+ + L + GY V +G K+ PF L+L DI P ++ Sbjct: 2 IESRILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHIN 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++ + + PDL V+ +TG V D+ ++KPF LV V + L Sbjct: 62 GIDILKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKAL 119 >gi|218885926|ref|YP_002435247.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756880|gb|ACL07779.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 456 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 51/115 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD R L L GY +G +A RE PF L+L D+ M M GI Sbjct: 8 RLLVVDDDTTHRGMLQTLLADWGYRTECAGDGETAVTLCRETPFDLILMDLRMGVMSGIG 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +P + ++ +T ++ V D+ L+KP +L + R L Sbjct: 68 ALREIRAYNPAIPILIMTAYSNVESAVDAIRSGAYDYLTKPLDFEELRLTLERAL 122 >gi|220909770|ref|YP_002485081.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219866381|gb|ACL46720.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 131 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 65/119 (54%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D D L L GYE+++ ++G A ++ + L+L D++MP++DG+E Sbjct: 8 RILVVDDLPDNTDLLQALLEPEGYEIITAHSGTEALAEIAQVSPDLILLDVMMPDLDGLE 67 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 + R + +P L ++ ++ + ++ +P + + A + KPF L+++V LL Sbjct: 68 VTHRLRQ-NPAYRSLPILLVSAYDSI--DPHQSLQQGANGFIRKPFDFVQLLDQVQSLL 123 >gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 676 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + + L K L Y V G + V + L++ D+++PE+DGI+ Sbjct: 2 RILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGIK 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 ++ + L V+F+T A+ + + A NA ++KPF L +L+ V LL Sbjct: 62 FCQQLRAQEYTLPVLFVT---ALDDSSEKIAGLNAGADDYITKPFELEELLARVRALL 116 Score = 40.4 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL +DD + + L L Y++V+ + + +++E LLL DI MP+ GI Sbjct: 539 RKILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGI 598 Query: 63 ELAR--RATELDPDLKVMFITGFA 84 EL + R + L ++F T A Sbjct: 599 ELCQTVRRSPAWRHLPIVFFTAHA 622 >gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis raciborskii T3] Length = 272 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56 ++L+ ED++ +R L+ AL GYEVV+ +G A + +R E F LL+ D+++ Sbjct: 42 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P+++G+++ R + ++ ++ + L+KPF +R++V Sbjct: 102 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRA 161 Query: 117 LL 118 LL Sbjct: 162 LL 163 >gi|162449920|ref|YP_001612287.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161160502|emb|CAN91807.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 451 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D +MR L L AGYEV +G+ D + + ++LTD+ M DGI Sbjct: 3 KILVVDDQRNMRTTLAMMLRGAGYEVDEAADGSQGADLGAKGAYDVVLTDLRMGGFDGIG 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R E + + +V+ +T + + ++ + KPF ++L+ +V R + Sbjct: 63 VLRAVKESNANTEVIVMTAYGTIESAVEAMRLGAFDYIQKPFSEQELLVKVERAI 117 >gi|163850758|ref|YP_001638801.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163662363|gb|ABY29730.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 1164 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L GY VV + A V E F LL+TD +MP M G +L Sbjct: 1053 LLVDDEEVVRISTADMLTDLGYAVVEATSAEEALRLVNTGEHFDLLVTDHLMPGMSGTDL 1112 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 AR P + V+ ++G+A ++PD L+KPF +L + + +L+T Sbjct: 1113 ARAIRTAKPGMPVLLVSGYAEREGVDPD------LARLNKPFRKDELASSLAQLMT 1162 >gi|156741340|ref|YP_001431469.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232668|gb|ABU57451.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALG-KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 + ++L+ +D + R L L + G EVV +NGA+A D V P L++ D+ MP + Sbjct: 13 STRVLIVDDHELARAGLAAVLACEPGIEVVGEADNGAAALDFVARHPVDLVMMDLQMPVI 72 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDS 92 DGIE RR L P + ++ +T V PD+ Sbjct: 73 DGIEATRRIKALHPAIGIIMVT----VQAKPDA 101 >gi|90415638|ref|ZP_01223572.1| sensor histidine kinase with a response regulator receiver domain [marine gamma proteobacterium HTCC2207] gi|90332961|gb|EAS48131.1| sensor histidine kinase with a response regulator receiver domain [marine gamma proteobacterium HTCC2207] Length = 1142 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++ +DD RR LI L G+ V++ +GAS + + L + DI MP M G EL Sbjct: 935 LMVVDDDAVQRRLLIDTLTPLGFNVIAAADGASCLQMLEQCTPKLFMLDISMPNMTGWEL 994 Query: 65 ARRATELDPDLKVMFITGFAAVAL-----NPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 A + ++ ++ I+ A L + +AP ++ L KP ++ L+ + L Sbjct: 995 AAELRQRGLNVPIVMISAEADEGLGLGGGRHEEDAPLHSDYLVKPINMPSLLTTLADQLN 1054 Query: 120 I 120 I Sbjct: 1055 I 1055 >gi|2598277|emb|CAA73688.1| NtrC protein [Brucella suis 1330] Length = 466 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+A+DD +R L +AL +AGY+V +N AS + V L++ D++MP+ + Sbjct: 1 MTGTVLVADDDXPIRXVLNQALSRAGYDVRVTSNAASLWLWVAAGDGDLVINDVMMPDEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R + PDL V+ ++ ++ + L K L +L+N V R + Sbjct: 61 AFDLLPRIKKKPPDLPVVVMSAQNTFMTPIRASEEGAYEYLPKSHDLTELINIVGRAFS 119 >gi|86156725|ref|YP_463510.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773236|gb|ABC80073.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 711 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 53/113 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ +R + L + GY+ + + A A + L L D+ MP DG E Sbjct: 592 RVLVADDERGVRETTARLLRRLGYDALPAASLAEALEVQGRGALDLALVDLAMPAGDGPE 651 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R P+L + +TG+ A D+ +L KPF + +L EV R Sbjct: 652 TLRALRRAQPELPAVLMTGYGLDARVRDALQGGFRGILHKPFSVEELAAEVAR 704 >gi|46581081|ref|YP_011889.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120601629|ref|YP_966029.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|46450502|gb|AAS97149.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120561858|gb|ABM27602.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|311234758|gb|ADP87612.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 487 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 15/118 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 N +IL+ +D MR FL L + ++V ++GA+A + P ++++TD +MP MD Sbjct: 125 NTRILVVDDSTSMRTFLKDELRRYMFQVFEASSGATALRLLERNPDIAVVITDYLMPGMD 184 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAP------KNAK--VLSKPFHLRDL 110 G+EL RR V A + ++ S P KN L+KPFH +L Sbjct: 185 GLELTRRIRNRWGRETV------AVIGVSVQSEMPLTVSFIKNGANDFLTKPFHREEL 236 >gi|88860218|ref|ZP_01134856.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88817416|gb|EAR27233.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 915 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 47/80 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ILL ED+ ++ ++K L + GY+ +NG ++ ++E + L+LTD MPE+D Sbjct: 792 LKSGILLVEDNVVNQKLIVKQLQRLGYQCEIASNGNEGFESWQKETYKLILTDCHMPELD 851 Query: 61 GIELARRATELDPDLKVMFI 80 G + ++ E + + +++ I Sbjct: 852 GYNMTKKIRESESERQIVRI 871 >gi|297579645|ref|ZP_06941572.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535291|gb|EFH74125.1| transcriptional regulator [Vibrio cholerae RC385] Length = 224 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 54/114 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + RF+ + L G+++ +G + V+ LL+ D ++P +DG+ Sbjct: 2 RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + ++ ++ V L+KPFH +L+ + L Sbjct: 62 LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEAL 115 >gi|330446649|ref|ZP_08310301.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490840|dbj|GAA04798.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 423 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ +DD D+ + L AGY V + + + +++TD+ MP ++G Sbjct: 4 NTNVLIVDDDQDVLDAYQELLELAGYNVQTVTDSTQVIAMLDYHWAGVIVTDMYMPGLNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +EL + D D+ V+ +TG + + D+ L KP DL+ + + L ++ Sbjct: 64 MELLEKIQHFDNDIPVIIVTGHGDIPMAVDALKKGAIDFLQKPLQPNDLIQLLEKHLPLR 123 >gi|328952173|ref|YP_004369507.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328452497|gb|AEB08326.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 445 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I + +D++ +R+ L K L K G+ V + +G + + F L+ D+++P + G+E Sbjct: 2 RIAVVDDEEIVRKRLQKTLEKEGHRVQTYPSGEAFLGSLEGASFDLVFLDVILPGLGGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + PDL+V+ ITG A++ ++ +SKP L ++ + + L K Sbjct: 62 ILQSIKARTPDLEVILITGHASLDAAIEAVKLGAFHYVSKPLRLEEIRHLTRKALEHKR 120 >gi|324112763|gb|EGC06739.1| sigma-54 interaction domain-containing protein [Escherichia fergusonii B253] gi|325496734|gb|EGC94593.1| acetoacetate metabolism regulator (two-component system response regulator) [Escherichia fergusonii ECD227] Length = 461 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D++++RR L A GY+ +CN + R +P ++L DI MPEMDGI Sbjct: 6 RILIVDDEENVRRMLSTAFSLQGYDTHCACNGNEALPLFTRVQP-DVVLMDIRMPEMDGI 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +P ++ +T +A V ++ + KPF L +L V R L +++ Sbjct: 65 SALKAMRGHNPRTPIVLMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLVVQRALQLQS 124 >gi|315038843|ref|YP_004032411.1| two-component system regulator [Lactobacillus amylovorus GRL 1112] gi|325957282|ref|YP_004292694.1| two-component system regulator [Lactobacillus acidophilus 30SC] gi|312276976|gb|ADQ59616.1| two-component system regulator [Lactobacillus amylovorus GRL 1112] gi|325333847|gb|ADZ07755.1| two-component system regulator [Lactobacillus acidophilus 30SC] gi|327184012|gb|AEA32459.1| two-component system regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 41/68 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L YE V NNG D + F +L D+++P+++G+E Sbjct: 3 KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALSQDFDAILLDLMLPDLNGLE 62 Query: 64 LARRATEL 71 +ARR ++ Sbjct: 63 IARRVRQV 70 >gi|309702664|emb|CBJ01993.1| putative hybrid sensory histidine kinase in two-component regulatory system [Escherichia coli ETEC H10407] Length = 1197 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 55/118 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R+ E + L + +T A + L KP L L +++L + N Sbjct: 1021 TRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAN 1078 >gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 227 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 19/124 (15%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD + + L GYEVVSC +G++A + +E L+L D+++P MD Sbjct: 1 MSSRILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMF---------ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G ++ R + VM +TG A A D P KPF ++LV Sbjct: 61 GFDVCRAIRRVSDAPIVMLTARSDTSDVVTGLEAGA---DDYVP-------KPFKPKELV 110 Query: 112 NEVN 115 V Sbjct: 111 ARVR 114 >gi|291516107|emb|CBK65317.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 1357 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++ +DD ++ FL+K LG Y V+S ++G+ A + +R L+++DI+M ++D Sbjct: 1101 VRHTVMVVDDDSNILDFLVKVLGN-DYFVISTDSGSQALNLLRNNDPDLVVSDIMMADID 1159 Query: 61 GIELARR 67 GIEL RR Sbjct: 1160 GIELCRR 1166 >gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 234 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 14/120 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L Y+V + +G A DKVR EPF ++ D+++P + G+ Sbjct: 2 KKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGL 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ R+ E +M +T + L D ++KPF R+++ + Sbjct: 62 DVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADD-------YVTKPFSPREIIARIK 114 >gi|299821055|ref|ZP_07052943.1| AraC family DNA-binding response regulator [Listeria grayi DSM 20601] gi|299816720|gb|EFI83956.1| AraC family DNA-binding response regulator [Listeria grayi DSM 20601] Length = 495 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDD----DDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIV 55 M K+LLA+D+ + +R+ + GYEVV + NG A + +R+EP L++ D+ Sbjct: 1 MMYKVLLADDEYMIINGLRKLI--PWESLGYEVVGTARNGLEALEFIRQEPVDLIVLDVN 58 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MP M GIE +A + + + ++G+ D+ L KP + +++ +N Sbjct: 59 MPIMSGIEFLEQAKKSGCLFRSIMLSGYQEFQYVKDTLNLGTENYLLKPVNKVEMIETLN 118 Query: 116 RL 117 R+ Sbjct: 119 RV 120 >gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 236 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GIELARR 67 G+ + +R Sbjct: 71 GLHVLQR 77 >gi|218439644|ref|YP_002377973.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218172372|gb|ACK71105.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 873 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 4/116 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--ASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +DD ++ K L Y+V++ +G A A +E +L D++MP MDG Sbjct: 752 ILVVDDDAPIQDITRKTLEVYNYQVMTAKDGIEAIAIYAQYQEKIKAVLMDLIMPTMDGF 811 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +L+P +KV+ I+G + + + + + K+ LSKP+ ++L+ + +L Sbjct: 812 SAIRALQKLNPQVKVIAISGLESYSQSLNKDGIKS--FLSKPYTTQELLGTLRFIL 865 >gi|200388170|ref|ZP_03214782.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605268|gb|EDZ03813.1| transcriptional regulatory protein ZraR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 441 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD L L GY V +G A +VRE+ F L+L D+ M EMDGI Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 65 ARRATELDPDLKVMFITGFAAV 86 + L+P + ++ +T F++V Sbjct: 68 LKEIKALNPVIPILIMTAFSSV 89 >gi|221069282|ref|ZP_03545387.1| response regulator receiver protein [Comamonas testosteroni KF-1] gi|299531245|ref|ZP_07044655.1| response regulator receiver protein [Comamonas testosteroni S44] gi|220714305|gb|EED69673.1| response regulator receiver protein [Comamonas testosteroni KF-1] gi|298720652|gb|EFI61599.1| response regulator receiver protein [Comamonas testosteroni S44] Length = 120 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL +D MR+ + L AG++VV +G A +K + + L+L D MP +DGI Sbjct: 2 RSILAVDDSPSMRKMVSFTLSSAGFKVVEAVDGVDALEKAQAQNIDLVLADQNMPRLDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ E +P K ++ +T ++ + A L KPF L+ + ++L Sbjct: 62 GLTRKLRE-NPKFKGTPILILTTESSDLMKQAGRAAGATGWLVKPFDPNRLIEVIQKVL 119 >gi|59714208|ref|YP_206983.1| two-component hybrid sensor histidine kinase [Vibrio fischeri ES114] gi|59482456|gb|AAW88095.1| two-component hybrid sensor histidine kinase [Vibrio fischeri ES114] Length = 766 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ ED+ + + L AGY + NG A K + L+ DI MPEMDG Sbjct: 498 DANILVVEDNHANQIVIKNTLNYAGYSIDIAQNGKEAITKAINTQYDLIFMDISMPEMDG 557 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + ++ L + M I A AL+ D A + LSKPF+ DL+ + + L Sbjct: 558 MTATKKIRSLSDTHQNMPIIALTAHALSGDKERFIEAGMTDYLSKPFNRSDLLECLAKYL 617 >gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] Length = 1287 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 8/124 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +++LL ED+ R LG+ G EV+ +G A + + F L+L DI MP MD Sbjct: 922 VGRRLLLVEDNATNRLVATSLLGQLGAEVIEAVDGFQALKLLSRQQFDLVLMDIQMPGMD 981 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 G + R R + DL ++ +T A A+ D A ++A + +SKPF + ++ ++ Sbjct: 982 GYQTTRKIRNELMLTDLPIIAMT---ANAMPEDKQACRDAGMNCHISKPFEIDEVATKLL 1038 Query: 116 RLLT 119 + L+ Sbjct: 1039 QYLS 1042 Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY---DKVREEPFSLLLTDIVMPEMD 60 ++LL ED+ R + L G EV + NNG +A +++ + F +LL D +P +D Sbjct: 779 RVLLVEDNHTSRLVFSELLRDLGCEVTALNNGLTAMKTIERMAPDSFDVLLADWQLPGLD 838 Query: 61 GIELA---RRATELDPDLKVMFITGFAAVAL 88 G+ELA R L ++ +T F+ L Sbjct: 839 GLELASWIRHLDSLSRQPGIIIVTAFSQAML 869 >gi|119386276|ref|YP_917331.1| response regulator receiver sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] gi|119376871|gb|ABL71635.1| response regulator receiver sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] Length = 371 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L+ +DD D +AL G E +GASA + EP ++L DI + D Sbjct: 1 MTRRLLILDDDADFAISTSRALALEGVECRIAPDGASALALLEVEPVEVVLIDIRLRHED 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ELA R P L ++ +T +A+V + L KPF L +L+ + R + Sbjct: 61 GTELAARLHARHPGLVMVIMTAYASVDSAVAALKAGAYDYLRKPFFLDELMRALERCFQL 120 >gi|332705287|ref|ZP_08425368.1| two-component sensor histidine kinase [Lyngbya majuscula 3L] gi|332356030|gb|EGJ35489.1| two-component sensor histidine kinase [Lyngbya majuscula 3L] Length = 1092 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D +R L KAGY V +G A+DK+R P ++ DI MP MDG+E Sbjct: 964 VLIVDDSITVRELLSMTFSKAGYRVEQARDGQEAWDKLRSGLPCEIVFCDIEMPRMDGLE 1023 Query: 64 LARRATELDPDL 75 L R + DPDL Sbjct: 1024 LLSRLQK-DPDL 1034 >gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 232 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +L G+EV + NGA DK R L+ D++MP MDG Sbjct: 8 RVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMPGMDGFG 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR D V+F+T AV ++KPF L ++V + +L Sbjct: 68 MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVIL 122 >gi|302039236|ref|YP_003799558.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300607300|emb|CBK43633.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 620 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + +LL E+D+ R+ L Y V+ + A ++ P L ++ + MPE+ Sbjct: 503 ETVLLVEEDEITRKLASSTLQCHRYHVLEAGSAVEALLVAQQHPGPIHLTVSHLSMPEIS 562 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ELA+R P +K +F++GF+ + S+ L +P+ DL ++ LL + Sbjct: 563 GRELAKRLVLQHPKMKALFVSGFSDDTIA--SHRVNKKYFLQQPYRQHDLAGKIRELLDV 620 >gi|323527265|ref|YP_004229418.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384267|gb|ADX56358.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 267 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L+++L ++ Y V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|322421931|ref|YP_004201154.1| histidine kinase [Geobacter sp. M18] gi|320128318|gb|ADW15878.1| histidine kinase [Geobacter sp. M18] Length = 593 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 ++L+ EDD+ + + + K L GY+V+ N A + R L+L+D+++P G Sbjct: 471 RVLVIEDDEIVGKMIAKMLEHMGYQVLMAENSVQAVEICRTGGDIDLVLSDVMLPGASGK 530 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E + L P+LK+++++G+A + + KPF + L Sbjct: 531 EAVGQILALRPELKIIYMSGYAPETVLEKGVDRTRVNFIQKPFDMASL 578 >gi|253569328|ref|ZP_04846738.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841347|gb|EES69428.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1324 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ DM F+ + L Y V++ NG A + E +L+++DI+MPEMDG+EL Sbjct: 1082 VLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLEL 1140 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + LD + ++ +T + + + KPF + L V LL+ Sbjct: 1141 CEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLS 1197 >gi|254785455|ref|YP_003072884.1| transcriptional activator [Teredinibacter turnerae T7901] gi|237686339|gb|ACR13603.1| transcriptional activator [Teredinibacter turnerae T7901] Length = 488 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 7/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ EDD D+R ++ L + V N +A + ++ + F L+++D+ M +M G Sbjct: 7 KILVVEDDFDLREAVVDTLQLEKFSVAQAENAEAAVEMLKADAAFDLIISDVNMGKMSGH 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKV--LSKPFHLRDLVNEVNRLL 118 +L + P + V+ +T +A+++ DS A +N V L KPF + L+ VN+L+ Sbjct: 67 DLLLHVKQHFPHIPVLLVTAYASIS---DSVEAIRNGAVDYLVKPFEGKLLLKTVNKLV 122 >gi|226228285|ref|YP_002762391.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091476|dbj|BAH39921.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 231 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAEDD +R + + L + + V S +G +A+ + ++ DI+MP MDGI Sbjct: 2 RLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGIA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + ++ +T AV L+KPFH +L V LL Sbjct: 62 ICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALL 116 >gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++L+ +D+ + + + L + GY+V +G +A D RE+ +++ D+++P +D Sbjct: 1 MSGQVLVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E+ RR D V+ +T A L+KPF R+LV V Sbjct: 61 GVEVCRRLRTFS-DCYVIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARV 113 >gi|1825466|gb|AAD12185.1| utilizing regulatory protein tutB [Thauera aromatica] Length = 218 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 54/116 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD MR + + G V + + + + R E + L+ D+ MP M G +L Sbjct: 10 VYLVDDDRSMRDAISSLVRSVGLNVETFASASEFLEHARSEACACLVLDVRMPRMSGFDL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ D+ ++FITG + + + + L KPF +L+ +NR L I Sbjct: 70 QHALSKNGVDIPIIFITGHGDIPMAVRAIKSGALEFLPKPFRAEELLEAINRALNI 125 >gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis] Length = 241 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 45/67 (67%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARR 67 GIE+ ++ Sbjct: 61 GIEVCKQ 67 >gi|29348306|ref|NP_811809.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340210|gb|AAO78003.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1326 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ DM F+ + L Y V++ NG A + E +L+++DI+MPEMDG+EL Sbjct: 1082 VLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLEL 1140 Query: 65 ARR-ATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + LD + ++ +T + + + KPF + L V LL+ Sbjct: 1141 CEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLS 1197 >gi|27363710|ref|NP_759238.1| chemotaxis protein CheV [Vibrio vulnificus CMCP6] gi|37679142|ref|NP_933751.1| chemotaxis signal transduction protein [Vibrio vulnificus YJ016] gi|320157114|ref|YP_004189493.1| chemotaxis protein CheV [Vibrio vulnificus MO6-24/O] gi|27359826|gb|AAO08765.1| Chemotaxis protein CheV [Vibrio vulnificus CMCP6] gi|37197884|dbj|BAC93722.1| chemotaxis signal transduction protein [Vibrio vulnificus YJ016] gi|319932426|gb|ADV87290.1| chemotaxis protein CheV [Vibrio vulnificus MO6-24/O] Length = 308 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+E V+ +G AY+K+ E + SL+++DI Sbjct: 182 RRILIADDSTVARKQVERAITNIGFECVAVKDGKEAYEKLLEMAADGPIRDQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL DL V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHAELK-DLYVILHSSLSGV 275 >gi|89096703|ref|ZP_01169595.1| response regulator [Bacillus sp. NRRL B-14911] gi|89088718|gb|EAR67827.1| response regulator [Bacillus sp. NRRL B-14911] Length = 223 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +DD +++ + L + GY+VV N+G A + L + D++MP MDG E Sbjct: 2 KIMVVDDDVYIQKLVSIHLSRKGYQVVKANDGEEALKILEGMNVDLAVVDVMMPGMDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + +E D D+ V+ +T + + + KPF +++L+ V +L Sbjct: 62 LTKILSE-DYDIPVILLTAKGQLDDKERGFLSGSEDYIVKPFEVKELLYRVAVVL 115 >gi|117922507|ref|YP_871699.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. ANA-3] gi|117614839|gb|ABK50293.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. ANA-3] Length = 460 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V +++R F LL+ DI +P GIE Sbjct: 17 VLIVDDEPGMRSFLNKALSKK-FALVETAGSIEDAEQLRSRCHFDLLIVDIRLPGRSGIE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E V+F+TG+A + + + + + KPFHL +++ V+R + Sbjct: 76 WHEALDEQGRRSDVIFMTGYADLEVAIKALRAGASDFIMKPFHLEQMMSAVDRCI 130 >gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD ++ + ++L K GY+ +G A +K + E + +++ D++MP MDGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGENYHMVIMDVMMPVMDGIE 64 Query: 64 LARRATE 70 RR E Sbjct: 65 SMRRIRE 71 >gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 45/67 (67%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARR 67 GIE+ ++ Sbjct: 61 GIEVCKQ 67 >gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 256 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L +L GY+V + +G A V + L+L DI+MP MDG+ Sbjct: 18 RVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIMMPRMDGLT 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + V+ +T AV L+KPF L +L+ V LL Sbjct: 78 AVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALL 132 >gi|302669543|ref|YP_003829503.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394016|gb|ADL32921.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1419 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD M +IK L K+ V + ++G A +K++E F+++L D +MP MDGIE Sbjct: 1090 ILVVDDTPMNLSVIKGLLKSTKMFVTTADSGEEALEKIKETDFNVVLLDHMMPGMDGIET 1149 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + E P+L V +T AAV Sbjct: 1150 LEKIRETHPNLPVYALTANAAVG 1172 >gi|299536834|ref|ZP_07050141.1| two component transcriptional regulator, LuxR family protein [Lysinibacillus fusiformis ZC1] gi|298727658|gb|EFI68226.1| two component transcriptional regulator, LuxR family protein [Lysinibacillus fusiformis ZC1] Length = 201 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LLAED +R L L + EV++ +G A++ +++EP + L DI MP + G Sbjct: 3 RVLLAEDQQMLRGALTSLLAFEPDIEVIAEVADGQQAWELIQQEPPDICLVDIEMPHLSG 62 Query: 62 IELARRATELDPDLKVMFITGFA 84 +ELA + + + KVM +T FA Sbjct: 63 LELAEKIKQANLPCKVMIVTTFA 85 >gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 45/67 (67%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARR 67 GIE+ ++ Sbjct: 61 GIEVCKQ 67 >gi|283835631|ref|ZP_06355372.1| sensor protein EvgS [Citrobacter youngae ATCC 29220] gi|291068845|gb|EFE06954.1| sensor protein EvgS [Citrobacter youngae ATCC 29220] Length = 1080 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ R L + L GY V +G A K+ ++ + LL+TD+ MP+ DG +L Sbjct: 846 ILIADDNPTNRLLLKRQLNTIGYSVDEACDGEEAEAKLAKKSYDLLITDVNMPKKDGFDL 905 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLLT 119 A P L++ +T +A+ + D + L KP ++ L +E++++ T Sbjct: 906 AASLRRQQPHLQIWGLTA-SALPQSRDRCLQNGMNLCLFKPVSIQTLTHELSKIDT 960 >gi|295675340|ref|YP_003603864.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. CCGE1002] gi|295435183|gb|ADG14353.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. CCGE1002] Length = 449 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG++V+ + +A + + ++++DI +P G++ Sbjct: 6 QVLYIEDDELVRRASVQSLQLAGFDVIGHASVEAAAKLISADFSGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 66 LLAQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAL 120 >gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 224 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN ++L+ ED+ ++ RF+ L GYEV ++G + E + L+L D+++P ++ Sbjct: 1 MNHRVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVMLPSLN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ R RA + P ++ IT +V + D+ A + KPF + +L+ + Sbjct: 61 GMEVCRRIRAVKQTP---IIMITARDSVFDRVMGLDNGAD---DYIVKPFAIEELLARIR 114 Query: 116 RLL 118 L Sbjct: 115 ALF 117 >gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1260 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +D + RR + L + +V NG A +K EEPF L+L D+ MP MDG+E Sbjct: 774 KVLLVDDVEANRRVVELFLKSSNVSIVHAENGKIALEKFTEEPFDLVLMDMEMPVMDGLE 833 Query: 64 LARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 RR + + + ++ +T A + + L+KP + L+N ++ Sbjct: 834 ATRRIRAWEQEKREYKTPIIALTAHAFQEHRQKTMDAGCTEFLAKPIKKQALINIID 890 >gi|226228272|ref|YP_002762378.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091463|dbj|BAH39908.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 1028 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPE 58 +ILLAED +D +R + L AG EV NG A + + PF LL+TD+ MPE Sbjct: 796 RILLAEDGEDNQRLIALLLRTAGAEVTVAPNGRQALEALEWASAAGAPFDLLVTDMQMPE 855 Query: 59 MDGIELA 65 MDG LA Sbjct: 856 MDGYTLA 862 >gi|186475207|ref|YP_001856677.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184191666|gb|ACC69631.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 253 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L+++L ++ Y V GA A + + F LL+ D+ +P+M G+E Sbjct: 2 RILIAEDDSILADGLVRSLRQSAYAVDHVKTGAEADTALSMQTFDLLILDLGLPKMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 234 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ D+ + + L G++V+ ++G SA D + E F+L + DI++P+MDG Sbjct: 2 RKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGS 61 Query: 63 EL---ARRAT 69 E+ RR T Sbjct: 62 EVLQYIRRKT 71 >gi|188582205|ref|YP_001925650.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179345703|gb|ACB81115.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 622 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 +IL+ +DD ++R L GY+ +G +A + + E F L++ D+ MP M G+ Sbjct: 508 RILVVDDDREVRHVTASFLNDFGYDETEAADGRAALALMEQGERFDLVVADLAMPGMTGV 567 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA + + V+ +TG A P + V++KPF +L V++LL Sbjct: 568 ELAAAIRQRFSGVPVLLLTGHAEAV-----QIPADLPVMTKPFASAELAARVSQLL 618 >gi|149918092|ref|ZP_01906585.1| serine/threonine protein kinase/response regulator/adenylate cyclase [Plesiocystis pacifica SIR-1] gi|149821097|gb|EDM80503.1| serine/threonine protein kinase/response regulator/adenylate cyclase [Plesiocystis pacifica SIR-1] Length = 678 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 11/121 (9%) Query: 4 KILLAEDDDD----MRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58 K+L+ +D+ D M+ + L K YE + +NG A +++R P ++L DI MP Sbjct: 281 KVLIVDDEPDVKVMMKARFRRQLAKGDYEFLFADNGEVALERLRANPDVDVVLADIHMPV 340 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS---KPFHLRDLVNEVN 115 MDG+ L R E+ P K + ++ F + P+ N KP +DL ++ Sbjct: 341 MDGLALLERIPEVSPFAKTVIVSAFGQM---PNIRRAMNRGAFDFVIKPIDFKDLAATLD 397 Query: 116 R 116 + Sbjct: 398 K 398 >gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+MDG Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKMDGFA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + + ++F+T A++ LSKPF ++L + +L Sbjct: 65 VCRR-IRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATIL 118 >gi|158522407|ref|YP_001530277.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158511233|gb|ABW68200.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 139 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 56/107 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ + R L AL K G V + +A ++ E+ F +++TDI M MDGI+ Sbjct: 6 EVLLLDDEPIVGRRLKPALDKIGCNVEGFEDPMAAVARIDEKQFDVVVTDIRMEGMDGIQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + P +V+ ITG+A + L ++ ++KPF DL Sbjct: 66 VLEHVQRRWPGTRVILITGYAKMDLAREAMGKGVFDFIAKPFRPDDL 112 >gi|86360302|ref|YP_472190.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86284404|gb|ABC93463.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 645 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%) Query: 6 LLAEDDDDM----RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++A DDD + +++ LG +E ++ G A D +R+E L++ D MP M G Sbjct: 531 IVAVDDDGLVLMNTTLMLEDLGHTVFEAMA---GPEALDILRKESVDLVICDHAMPRMTG 587 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +LA P++ ++ TG+A + PD N L KPF L + ++R+ Sbjct: 588 AQLAEAIRSEWPEMPIILATGYADL---PDGAGAANLPRLGKPFSQAQLADAISRV 640 >gi|324117144|gb|EGC11052.1| TMAO reductase sytem sensor TorS [Escherichia coli E1167] Length = 914 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|323698190|ref|ZP_08110102.1| histidine kinase [Desulfovibrio sp. ND132] gi|323458122|gb|EGB13987.1| histidine kinase [Desulfovibrio desulfuricans ND132] Length = 520 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AEDD RR+L++ L K G V + +G A + ++ F ++L D+ MP +DGIE Sbjct: 398 RVLVAEDDMVNRRYLVRLLEKMGCAVDAAEDGLRAVEILQAAHFDIVLMDVEMPGLDGIE 457 Query: 64 LARRATE-----LDPDLKVMFITGFA 84 RR LDP + ++ +T A Sbjct: 458 ATRRIRNPETGCLDPQVPIVALTARA 483 >gi|320158132|ref|YP_004190510.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio vulnificus MO6-24/O] gi|319933444|gb|ADV88307.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio vulnificus MO6-24/O] Length = 1176 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 K+L+AED+ + + + G + NNG A + +++ +LLLTD MPEMDG Sbjct: 954 KVLVAEDNKINQHIVKMQFAELGLTPIVVNNGLEALNYIKQHGDVALLLTDFHMPEMDGY 1013 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 EL + RA E L V+ +T + N S ++L KP+ L+ L Sbjct: 1014 ELVKTLRANERFAALPVVGVTAEDSRIANEKSMQSGINEILYKPYDLKQL 1063 >gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 14/120 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L K GY+V S +G A + + F +L D+++P MDGI Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDGI 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ +R + ++ ++ +T + + D LSKPF R+++ + Sbjct: 62 EITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADD-------YLSKPFSPREVIARIK 114 >gi|296158636|ref|ZP_06841466.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295891204|gb|EFG70992.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 737 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 15/116 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREE--------PFSLLLT 52 +ILL ED+ ++ L G++V N +A +D R PF L+L+ Sbjct: 598 RILLVEDNSEVAAGTEALLQMMGHQVTCVFNADTALRLFDDARARQARTGEPLPFDLVLS 657 Query: 53 DIVMP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 DI MP M+GI+LA D L V+ +TG+A D N +VLSKPF + Sbjct: 658 DIHMPGTMNGIDLAEAVLAFDTRLPVILVTGYAE---ELDRARHVNVRVLSKPFDI 710 >gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2] gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + K+L+ ED+ + +L K LG+ G+ V + +NG E+P+ L++ D ++P +D Sbjct: 5 LRMKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGID 64 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + A R + P V+ +T A V L KPF +LV ++ LL Sbjct: 65 GLAVLAALRQSRQTP---VLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALL 121 >gi|260462382|ref|ZP_05810590.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031876|gb|EEW33144.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 221 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD D+ R + AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ V L+ Sbjct: 62 VVERWRRGGRKMPVLILTARDRWSDKVSGIDAGAD---DYVTKPFHIEEVLARVRALI 116 >gi|255320548|ref|ZP_05361728.1| CheW-like domain protein [Acinetobacter radioresistens SK82] gi|262379105|ref|ZP_06072261.1| chemotaxis protein histidine kinase [Acinetobacter radioresistens SH164] gi|255302398|gb|EET81635.1| CheW-like domain protein [Acinetobacter radioresistens SK82] gi|262298562|gb|EEY86475.1| chemotaxis protein histidine kinase [Acinetobacter radioresistens SH164] Length = 1460 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R+ + L + GY+VV+ +G A +++ L+L DI MP MDG E+ Sbjct: 1341 IMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVEAIEQLESIKPDLMLLDIEMPRMDGFEV 1400 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R ++ ++ ++ IT + A + + KPF DL+ + LL + Sbjct: 1401 TNLVRHHDVHRNMPIIMITSRTGEKHRERAFALGATQYMGKPFQEADLLANIEALLEV 1458 >gi|269929174|ref|YP_003321495.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269788531|gb|ACZ40673.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 232 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L LG AGY+V + +GA+A V E L++ D+ MP MDG Sbjct: 2 RILVVDDDPRIRETLAGPLGAAGYDVTAVGDGAAALAAVERERPDLIILDVAMPGMDGFA 61 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + R + P V+F+T A ++KPF + L+ V Sbjct: 62 VCRELRAYEELSGLPRTPVIFLTVRDDFASEETGFQAGADDYVAKPFSIPALLARVR 118 >gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ ++ L +L AG+ V + NG A V+ L++ D+++P+MDG + Sbjct: 8 RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGFD 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR D V+F+T A ++KPF L ++V + +L Sbjct: 68 VVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVL 122 >gi|188574094|ref|YP_001919285.1| transport activator [Escherichia coli 53638] gi|188501269|gb|ACD54404.1| transport activator [Escherichia coli 53638] Length = 415 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+ + L ++GY V +CNN A ++ + ++L+D+ MP GI+L Sbjct: 8 ILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAWIQPDWPGIVLSDVCMPGCSGIDL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNR 116 + D + ++ ITG V + D+ L KP L LV E R Sbjct: 68 MMLFHQDDQQIPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLSLVEEALR 122 >gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 248 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+MDG Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKMDGFA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + + ++F+T A++ LSKPF ++L + +L Sbjct: 65 VCRR-IRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATIL 118 >gi|110802788|ref|YP_699365.1| AraC family DNA-binding response regulator [Clostridium perfringens SM101] gi|110683289|gb|ABG86659.1| DNA-binding response regulator, AraC family [Clostridium perfringens SM101] Length = 507 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K++LA+D++ + + L I + G E+V+ +NG A DK +E P ++LTDI MP++ Sbjct: 3 KVMLADDENLILQGLENIIEWEELGLEIVNKASNGQEAIDKFKENPVDIVLTDINMPQVT 62 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL + +++ D+K + ++G+ Sbjct: 63 GLELLKELKKINSDVKFIILSGY 85 >gi|37675989|ref|NP_936385.1| sensor kinase VieS [Vibrio vulnificus YJ016] gi|37200529|dbj|BAC96355.1| probable sensor kinase VieS [Vibrio vulnificus YJ016] Length = 1243 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 K+L+AED+ + + + G + NNG A + +++ +LLLTD MPEMDG Sbjct: 1021 KVLVAEDNKINQHIVKMQFAELGLTPIVVNNGLEALNYIKQHGDVALLLTDFHMPEMDGY 1080 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 EL + RA E L V+ +T + N S ++L KP+ L+ L Sbjct: 1081 ELVKTLRANERFAALPVVGVTAEDSRIANEKSMQSGINEILYKPYDLKQL 1130 >gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis] gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 240 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 45/67 (67%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARR 67 GIE+ ++ Sbjct: 61 GIEVCKQ 67 >gi|218893642|ref|YP_002442511.1| two-component response regulator PilR [Pseudomonas aeruginosa LESB58] gi|254238705|ref|ZP_04932028.1| two-component response regulator PilR [Pseudomonas aeruginosa C3719] gi|296391369|ref|ZP_06880844.1| two-component response regulator PilR [Pseudomonas aeruginosa PAb1] gi|126170636|gb|EAZ56147.1| two-component response regulator PilR [Pseudomonas aeruginosa C3719] gi|218773870|emb|CAW29684.1| two-component response regulator PilR [Pseudomonas aeruginosa LESB58] Length = 445 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QK L+ +D+ D+R L LG+ + S N A + + EPF L LTD+ +P+ G Sbjct: 3 RQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 ++L + + P V IT + ++ + L+KP LR+LV RL Sbjct: 63 LDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRL 121 >gi|320178565|gb|EFW53530.1| Sensor protein torS [Shigella boydii ATCC 9905] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|300937658|ref|ZP_07152464.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 21-1] gi|300457306|gb|EFK20799.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 21-1] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNSSGAQVVAVGNAAHAIETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 225 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ ILL +D+ D+ F+ AL GYEVV G A K++ P L++ D++MP MD Sbjct: 1 MNQTILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKINP-DLIVLDVMMPGMD 59 Query: 61 GI---ELARRA 68 G EL R++ Sbjct: 60 GFALCELIRKS 70 >gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q IL+ +D++ + L L + G++V + +G +A DK E F ++ D+++PEMD Sbjct: 1 MAQHILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ ++ + ++ +T + L D L+KPF R++V Sbjct: 61 GLEVCKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADD-------YLTKPFSPREVVAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VRAIL 118 >gi|197121882|ref|YP_002133833.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196171731|gb|ACG72704.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 477 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LLA+D +++ + +VV+ +NG A K RE +++L D+VMP + Sbjct: 1 MPKTLLLADDSITIQKVVGITFASEDVQVVAVDNGEDALAKARELRPAVILADVVMPRRN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G EL A + DP L+ + + A D + A +SKPF + L+N+V L Sbjct: 61 GYELC-EAVKSDPALRGIPVLLLAGTFEAFDEARARGAHADGHISKPFESQALINKVREL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 948 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 948 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] Length = 601 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D R L L GYEV NG A V+ P SL+L DI+MP++DG E+ Sbjct: 13 ILIVDDTPMNLRLLSTMLSDQGYEVRQAINGKMALTAVQTCPPSLILLDIMMPDIDGYEV 72 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 DP D+ ++F++ V + ++KPF +++ V L +K Sbjct: 73 CSFLKN-DPQTADIPIIFLSALDDVLDKVKAFKVGGVDYITKPFEFEEILARVKNQLALK 131 Query: 122 N 122 + Sbjct: 132 D 132 >gi|110805009|ref|YP_688528.1| sensor protein torS [Shigella flexneri 5 str. 8401] gi|110614557|gb|ABF03224.1| sensor protein torS [Shigella flexneri 5 str. 8401] Length = 816 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 595 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 654 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 655 TLARQLAQQYPSL---VLIGFSA 674 >gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 948 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 631 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++ILL ED ++ K L + G V NG A V + F L+L D+ MPEMDG Sbjct: 510 NKQILLVEDTPVNQKIAEKLLSRYGCRVTIAVNGLEALAAVERDTFDLILMDMQMPEMDG 569 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 +E R R E + L I A A+ D A + ++KPF ++++ + R Sbjct: 570 VEATRHLRIREAELKLPRQPIVAMTANAMEEDREQCITAGMDDFIAKPFRADEVISMLLR 629 Query: 117 LL 118 L Sbjct: 630 YL 631 >gi|78221998|ref|YP_383745.1| response regulator receiver domain-containing protein [Geobacter metallireducens GS-15] gi|78193253|gb|ABB31020.1| response regulator receiver domain protein (CheY-like) [Geobacter metallireducens GS-15] Length = 142 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 5 ILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL EDD R + + G ++ +NG S + R F +++TDI MP+MDGI Sbjct: 13 ILFVEDDRYARELIPLMISNKFPGVAIILADNGESGLELCRANEFDIVITDINMPDMDGI 72 Query: 63 ELARRATELDPDLKVMFITGFA 84 +A L PD K++ ++G++ Sbjct: 73 RMAGEIRGLKPDAKIIVMSGYS 94 >gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT] gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ EDD +R L L K GY++ +G A R +L++ D+++P +DG Sbjct: 3 EHKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R + + ++ +T ++ A + LSKPF +++L+ + LL Sbjct: 63 FELC-RLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALL 118 >gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis] Length = 240 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 45/67 (67%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARR 67 GIE+ ++ Sbjct: 61 GIEVCKQ 67 >gi|24987831|pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus Subtilis Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 45/67 (67%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 61 Query: 61 GIELARR 67 GIE+ ++ Sbjct: 62 GIEVCKQ 68 >gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis regulator component C gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 948 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|194432448|ref|ZP_03064735.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012] gi|194419335|gb|EDX35417.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012] gi|332095919|gb|EGJ00926.1| TMAO reductase sytem sensor TorS [Shigella dysenteriae 155-74] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|150016917|ref|YP_001309171.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903382|gb|ABR34215.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD + L +L + G++ + C + +SA + + F+L L D+ +P+ G E Sbjct: 2 KILLVEDDKIIASGLEYSLKQEGFDTMVCYDISSAKGVIEDNKFNLCLFDLSLPDGSGYE 61 Query: 64 LARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E D D V+F+T V + D A ++KPF +R+L++ + ++ Sbjct: 62 LCKLVREKD-DTPVIFLTACDDEVNVVMGLDIGAD---DYITKPFRIRELISRIRSVI 115 >gi|323379162|gb|ADX51430.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11] Length = 914 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|323157492|gb|EFZ43602.1| TMAO reductase sytem sensor TorS [Escherichia coli EPECa14] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|323127762|gb|ADX25059.1| two-component response regulator YesN [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 246 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|307311622|ref|ZP_07591262.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|306908177|gb|EFN38676.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|315060277|gb|ADT74604.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli W] Length = 899 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 668 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 727 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 728 TLARQLAQQYPSL---VLIGFSA 747 >gi|300819426|ref|ZP_07099623.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1] gi|331667386|ref|ZP_08368250.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271] gi|300528022|gb|EFK49084.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1] gi|331064971|gb|EGI36866.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|300920962|ref|ZP_07137352.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1] gi|300412082|gb|EFJ95392.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|300863635|ref|ZP_07108575.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506] gi|300338377|emb|CBN53719.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506] Length = 945 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ D+R ++ + L +A + VV NGA + + + +++TD++MP + G++L Sbjct: 595 VLVVDDNPDLRTYVARILRQANFSVVLARNGAEGLEMAKSDDPDVIVTDLMMPVVSGLDL 654 Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R E D V+ +T A + LSKPF+ R+L+ EV L+ +K Sbjct: 655 IRMIREDDVLKGTPVILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLVALKQ 714 >gi|288959081|ref|YP_003449422.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911389|dbj|BAI72878.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 748 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 4/116 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPE-MDG 61 +IL+ ED+ +R +++ L + G+ V + +G SA + + F L+++D+VMP + G Sbjct: 628 RILVVEDNPLVRMAMVEGLTEDGFTVETAEDGVSALALLETDRAFDLVVSDVVMPGGVSG 687 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 I+LAR P L+V+ +G++ +L + A VL+KPF L + L Sbjct: 688 IDLARHIRGHWPHLRVLLASGYSPESLA--TMGADTASVLAKPFTPDQLAARIRSL 741 >gi|270295880|ref|ZP_06202080.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270273284|gb|EFA19146.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 1354 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ D+R ++ ++LG +++++ +G+ + +E +++++DI+MP MDGI+L Sbjct: 1104 LLVVEDNQDIREYIRQSLGD-DFDILTAEDGSRGWTLAQERIPNIIVSDIMMPVMDGIQL 1162 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + + V+ +T ++ + L+KPF + L + +N LL Sbjct: 1163 CRLVKDDIRTSHIPVILLTAKDSLHDKEEGYTAGADSYLTKPFSAKLLHSRINNLL 1218 >gi|260854697|ref|YP_003228588.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O26:H11 str. 11368] gi|257753346|dbj|BAI24848.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O26:H11 str. 11368] Length = 914 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|209918246|ref|YP_002292330.1| hybrid sensory histidine kinase TorS [Escherichia coli SE11] gi|209911505|dbj|BAG76579.1| two-component sensor kinase [Escherichia coli SE11] gi|324019115|gb|EGB88334.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 117-3] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|192360976|ref|YP_001983403.1| chemotaxis protein CheY [Cellvibrio japonicus Ueda107] gi|190687141|gb|ACE84819.1| chemotaxis protein CheY [Cellvibrio japonicus Ueda107] Length = 121 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ + AL AGY VV ++G A K+ + +L+++D+ MP MD Sbjct: 1 MSKVILVVDDSASIRQVVGMALRGAGYTVVEASDGRDALSKLDGQKINLVISDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI + + P+ K V+ +T A + A + KPF ++ V+ L Sbjct: 61 GITFVKEMKQ-KPNYKFTPVIMLTTEGADDKKREGQAAGAKAWIVKPFRPEQMLQAVSML 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|170020606|ref|YP_001725560.1| hybrid sensory histidine kinase TorS [Escherichia coli ATCC 8739] gi|169755534|gb|ACA78233.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|161984909|ref|YP_408631.2| hybrid sensory histidine kinase TorS [Shigella boydii Sb227] Length = 914 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|188579379|ref|YP_001922824.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342877|gb|ACB78289.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 741 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMP-EMDG 61 +L+ ED+ +R L GY V+ +G A LLLTD+V+P ++ G Sbjct: 603 VLVVEDEAAVREIACAILSDLGYRVLEAADGEEALRVFGANTASVDLLLTDVVLPGKVRG 662 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA R L P+++V+F++G+ ++ ++ KPF L +V +L Sbjct: 663 RELAERIRALRPEVRVVFMSGYTENSIVHHGRLDDGVHLVGKPFKREQLARKVTEVL 719 >gi|157158585|ref|YP_001462226.1| hybrid sensory histidine kinase TorS [Escherichia coli E24377A] gi|332279822|ref|ZP_08392235.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9] gi|157080615|gb|ABV20323.1| sensor histidine kinase/response regulator TorS [Escherichia coli E24377A] gi|332102174|gb|EGJ05520.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9] Length = 914 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+MDG Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVMLPKMDGFA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + + ++F+T A++ LSKPF ++L + +L Sbjct: 65 VCRR-IRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATIL 118 >gi|153003604|ref|YP_001377929.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027177|gb|ABS24945.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 471 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ +D+ L + + G+ V +G++A D +R E S ++TD++MP M Sbjct: 1 MTPLVLIVDDEKPNLESLARIFQREGWRVALAESGSAALDVLRRERVSAVVTDLMMPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G EL R L P+ +V+ +T + V Sbjct: 61 GEELLRAVKALSPETEVVLMTAYGTV 86 >gi|170737005|ref|YP_001778265.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169819193|gb|ACA93775.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1194 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD + R + KA L + GY V+ +NG A + F+L+LTD MPEMDG EL Sbjct: 957 ILVVDDHPVNRLVTKAQLERLGYTAVAVSNGMDALRVLDNSDFALILTDCAMPEMDGYEL 1016 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD 91 +R + + I A AL PD Sbjct: 1017 TKRIRSREHRSRDTPIVALTANAL-PD 1042 >gi|152986402|ref|YP_001350519.1| two-component response regulator PilR [Pseudomonas aeruginosa PA7] gi|150961560|gb|ABR83585.1| two-component response regulator PilR [Pseudomonas aeruginosa PA7] Length = 445 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QK L+ +D+ D+R L LG+ + S N A + + EPF L LTD+ +P+ G Sbjct: 3 RQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 ++L + + P V IT + ++ + L+KP LR+LV RL Sbjct: 63 LDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRL 121 >gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus Kuenenia stuttgartiensis] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 70/125 (56%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ IL+ +D+ D+ ++ L K GY+ ++ +G +A + + E +L++ DI++P M+ Sbjct: 1 MNETILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALELSKSERPALIILDIMLPGMN 60 Query: 61 GIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G+E+ +R + E D ++ +T A + + + K+ ++KPF ++LV Sbjct: 61 GLEVCKRLKSDEALSDAAIIMLT-----ARGEEDDITRGLKLGADDYVTKPFSPKELVAR 115 Query: 114 VNRLL 118 V+ +L Sbjct: 116 VHSVL 120 >gi|256018746|ref|ZP_05432611.1| hybrid sensory histidine kinase TorS [Shigella sp. D9] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|81246095|gb|ABB66803.1| sensor protein torS [Shigella boydii Sb227] gi|320187205|gb|EFW61906.1| Sensor protein torS [Shigella flexneri CDC 796-83] gi|332093573|gb|EGI98631.1| TMAO reductase sytem sensor TorS [Shigella boydii 3594-74] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|26992059|ref|NP_747484.1| two component heavy metal response transcriptional regulator [Pseudomonas putida KT2440] gi|24987198|gb|AAN70948.1|AE016739_1 transcriptional activator CopR [Pseudomonas putida KT2440] Length = 225 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ +L + L +AG+ V G A E + LL+ D++MP ++G E Sbjct: 2 KLLVAEDEPKTGAYLQQGLAEAGFTVDRVLTGTDALQHALSESYDLLILDVMMPGLEGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R D+ V+F+T V L KPF +L+ V LL Sbjct: 62 VLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLL 116 >gi|53747886|emb|CAF05631.1| hypothetical protein [Angiococcus disciformis] Length = 481 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ R L G+ V + + A + + + F ++TD+++P DG+E Sbjct: 22 RILLVDDEKIARTLYGDYLTAVGHAVTAVGSLQDAREALAGDRFDAVVTDLILPGGDGME 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN--AKVLSKPFHLRDLVNEVNRLLTIK 121 + R E P ++V+ ITG V +P A K+ A+ L KP L + V R LT + Sbjct: 82 VLRHVRERHPGVEVVVITGLEKV--DPAVRAIKSGAAEYLVKPVAPEALQHAVRRALTTR 139 Query: 122 N 122 + Sbjct: 140 D 140 >gi|89072723|ref|ZP_01159288.1| phosphoglycerate transport system transcription regulator [Photobacterium sp. SKA34] gi|89051543|gb|EAR56997.1| phosphoglycerate transport system transcription regulator [Photobacterium sp. SKA34] Length = 424 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 57/114 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD D+ + L +GY V + + + + + +++TD+ MP +DG+EL Sbjct: 8 VLIVDDDQDVLDAYQELLELSGYNVATVQDSSKVINMLNHNWSGVIVTDMYMPGLDGMEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + D ++ V+ +TG + + D+ L KP ++L+ + + L Sbjct: 68 LEKVQDFDNEIPVIIVTGHGDIPMAVDALKKGAIDFLQKPLQPKELIKLLEKHL 121 >gi|191166564|ref|ZP_03028393.1| TMAO reductase system sensor TorS [Escherichia coli B7A] gi|190903369|gb|EDV63089.1| TMAO reductase system sensor TorS [Escherichia coli B7A] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|193070789|ref|ZP_03051723.1| TMAO reductase system sensor TorS [Escherichia coli E110019] gi|192955900|gb|EDV86369.1| TMAO reductase system sensor TorS [Escherichia coli E110019] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|330980330|gb|EGH78455.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 272 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV ++G A +++ + F L+L D MP MDG E Sbjct: 150 RVLLVEDNPVNQLVAKGILGKLGCEVTISSHGGEALEQLEQGHFDLVLMDCNMPVMDGYE 209 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R R++ P+L ++ +T A A L+KPF +LV+ +++ + I Sbjct: 210 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWIPIT 269 Query: 122 N 122 Sbjct: 270 G 270 >gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 238 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 5/116 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ +RR L L + GY V NG A D E+ + +L D++MPE DG+ + Sbjct: 7 VLVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLMMPEKDGVAV 66 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A R T++ P ++ +T A + + KPF R++V V +L Sbjct: 67 ATELRETKMTP---IIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAIL 119 >gi|320533794|ref|ZP_08034390.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133999|gb|EFW26351.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 242 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +LL +D+ +RR L L + GY V+ ++GA A D + ++++D++MP MDG Sbjct: 10 SATVLLVDDEAPIRRSLGPYLERGGYRVLLASDGAEALDLLASYQVDIIVSDVLMPRMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR ++ +T A + LSKPF +L + + +L Sbjct: 70 RELVRRVRAAGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVL 126 >gi|315606703|ref|ZP_07881713.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315251558|gb|EFU31537.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1309 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 4/112 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMD 60 N +ILL +DD ++ R++ LG Y S NG A K+ + + L+++D++MPEMD Sbjct: 1054 NFRILLVDDDPEIARYIAGELGD-WYRFDSAPNGKEALKKLLGDTGYDLVISDVMMPEMD 1112 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ L ++ D+ V+ +T + V + L+KPF++ +L Sbjct: 1113 GVTLVKKIKTNSNISDIPVILLTSKSEVENRLEGLKKGADAFLAKPFNMEEL 1164 >gi|296387788|ref|ZP_06877263.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PAb1] Length = 769 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 646 KRILVVDDSLTVRELERKLLLGRGYDVAVAVDGMDGWNALRSEHFDLLITDIDMPRMDGI 705 Query: 63 E---LARRATELDPDLKVMFIT 81 E L RR + L L VM ++ Sbjct: 706 ELVTLVRRDSRLQ-SLPVMVVS 726 >gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+ +D+ + L L +AG+ VV+ N+G A +KV E ++ D+++P++D Sbjct: 1 MSKKVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ ++ + ++ +T + L D ++KPF R++V Sbjct: 61 GVEVCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADD-------YMTKPFSPREVVAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|302875105|ref|YP_003843738.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690270|ref|ZP_07632716.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577962|gb|ADL51974.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ ++R+ +I L K GY++ +G A + L+++DI+MP MDG EL Sbjct: 4 VLIVEDNTNIRKLMIARLEKEGYKIFDAEDGIKALQILDSYHIDLIISDIMMPNMDGYEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ ++ IT + + KP +L ++V V LL Sbjct: 64 TMSLRESQYNMPILMITARESYEDKEKGFLFGADDYMVKPINLNEMVLRVAALL 117 >gi|238923350|ref|YP_002936865.1| hypothetical protein EUBREC_0967 [Eubacterium rectale ATCC 33656] gi|238875024|gb|ACR74731.1| hypothetical protein EUBREC_0967 [Eubacterium rectale ATCC 33656] Length = 271 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDG 61 +IL+ EDD D+ L AL KAGY +G K+ E ++L+L D+++P + G Sbjct: 18 EILIIEDDKDINDLLATALSKAGYRTRQAWSGTEGELLLKLDREAYALVLLDLMLPGLSG 77 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL R ++D L V+ +T + + ++KPF ++++V V Sbjct: 78 EELLARIRQMDASLPVIILTAKDELDEKINLLVAGADDYITKPFEIKEVVARVT 131 >gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80] gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80] Length = 224 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 54/114 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + RF+ + L G+++ +G + V+ LL+ D ++P +DG+ Sbjct: 2 RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + ++ ++ V L+KPFH +L+ + L Sbjct: 62 LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEAL 115 >gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 11/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ M L L GY +S +G A + ++ F +L DI+MPEMDG E Sbjct: 4 ILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFKFILLDIMMPEMDGWET 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLLT 119 R+ ++ ++ +T A + + + K+ ++KPFH +L+ + +L Sbjct: 64 CRKIRSF-SNVPIIMVT-----ARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVLR 117 Query: 120 IKN 122 N Sbjct: 118 RSN 120 >gi|255588587|ref|XP_002534653.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223524834|gb|EEF27732.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 122 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + +L AGY+VV +G +K +E+ L+LTD MP MD Sbjct: 1 MAKTILTVDDSGSLRQMVAFSLKAAGYDVVQAVDGQDGLNKAKEKTVDLVLTDQNMPVMD 60 Query: 61 GIELARRATELDPDLKV--MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L L KV + +T ++ + A L KPF + L+ V +++ Sbjct: 61 GLTLITNLRTLASYQKVPILMLTTESSDEMKAKGKAAGANGWLVKPFDPKRLIEVVQKVI 120 >gi|218661617|ref|ZP_03517547.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli IE4771] Length = 186 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 26 GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAA 85 G+ V G A +R+EP L++ D MP M G +LA P L ++ TG+A Sbjct: 95 GHTVFEAMAGPEALAILRKEPVDLVICDHAMPRMTGAQLAEAIRSEWPGLPIILATGYAD 154 Query: 86 VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + PD N L KPF L + ++R+ Sbjct: 155 L---PDGAGAANLPRLGKPFSQAQLADAISRI 183 >gi|209521257|ref|ZP_03269977.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. H160] gi|209498299|gb|EDZ98434.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. H160] Length = 449 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD+ +RR +++L AG++V+ + +A + + ++++DI +P G++ Sbjct: 6 QVLYIEDDELVRRASVQSLQLAGFDVIGHASVEAAAKLISADFSGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 66 LLAQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAL 120 >gi|218533250|ref|YP_002424066.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525553|gb|ACK86138.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 890 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60 + +L+ +D+ +R + L GY + + A+ ++ + LL+TD+ +P M+ Sbjct: 771 ETVLIVDDEPTVRMLVTDILADLGYTAIEAGDSATGLKLLQSDVRIDLLVTDVGLPGGMN 830 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++A + P L+V+FITG+A A+ + + VL+KPF + + + ++ Sbjct: 831 GRQMADAGRAVRPGLRVLFITGYAENAVLGNGHLAPGMAVLTKPFPVETMAARIRSMI 888 >gi|32423745|gb|AAP81269.1| PilR [Pseudomonas aeruginosa PA14] Length = 445 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QK L+ +D+ D+R L LG+ + S N A + + EPF L LTD+ +P+ G Sbjct: 3 RQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 ++L + + P V IT + ++ + L+KP LR+LV RL Sbjct: 63 LDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRL 121 >gi|70728515|ref|YP_258264.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68342814|gb|AAY90420.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 776 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 653 KRILVVDDSLTVRELQRKLLINRGYDVAVAVDGMDGWNALRSESFDLLITDIDMPRMDGI 712 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR L L VM ++ Sbjct: 713 ELVTLLRRDNRLQ-SLPVMVVS 733 >gi|305667235|ref|YP_003863522.1| two-component system transcriptional regulator [Maribacter sp. HTCC2170] gi|88708169|gb|EAR00407.1| two-component system, transcriptional regulatory protein [Maribacter sp. HTCC2170] Length = 237 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 46/82 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N+KILL EDD + L L ++V NG ++K +++ + + + D++MP D Sbjct: 4 INKKILLVEDDPNFGIVLKDYLSMNNFDVTLAKNGMEGFEKFKKDNYDVCILDVMMPYKD 63 Query: 61 GIELARRATELDPDLKVMFITG 82 G LAR E + ++ ++F+T Sbjct: 64 GFTLAREIREKNENVPIVFLTA 85 >gi|312890095|ref|ZP_07749639.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311297627|gb|EFQ74752.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ ++ +++ L K GYE NG F ++L DI MP MDG+E Sbjct: 808 ILVAEDNLINQKLILRILSKLGYEATVAQNGLEVIALTELHKFDVILMDIQMPMMDGLE- 866 Query: 65 ARRATELDPDLKVM--FITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 AT++ K+ FI A A+ D A + LSKP HL + ++++ Sbjct: 867 ---ATQIIRSSKIEQPFIIAMTANAMPEDKEDCLKAGMDDYLSKPIHLESFLTALSKV 921 >gi|311105403|ref|YP_003978256.1| response regulator 4 [Achromobacter xylosoxidans A8] gi|310760092|gb|ADP15541.1| response regulator 4 [Achromobacter xylosoxidans A8] Length = 239 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 I L EDD D R L LG G+ V +C+N A+ Y +++E+P +++ D +P DG Sbjct: 10 IGLLEDDADFREELALGLGGYGFRVAFACDNAAAFYRRLQEQPCDIVILDAHLPGEDGFS 69 Query: 64 LARRATELDPDLKVMFITGFAAV 86 +A R L P + ++ +TG +A+ Sbjct: 70 VATRLRALSP-VGIVMLTGRSAL 91 >gi|294146991|ref|YP_003559657.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] gi|292677408|dbj|BAI98925.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] Length = 569 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 8/104 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 ++LL +D+D +R + L + GYEVV + A + + P +L+TD +MP M G Sbjct: 455 RVLLVDDNDLVRNSTREMLVEMGYEVVDTDRAERALGMIESGDRP-DILITDHIMPGMTG 513 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +ELA R P + ++ I+G+ V D AP + LSKPF Sbjct: 514 VELALRLRADHPQIALLIISGYEGV----DLIAPDITR-LSKPF 552 >gi|283769507|ref|ZP_06342403.1| response regulator receiver domain protein [Bulleidia extructa W1219] gi|283103775|gb|EFC05161.1| response regulator receiver domain protein [Bulleidia extructa W1219] Length = 222 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD++ RFLI K GY V +NG A +K++ L++ D++MPE+DG Sbjct: 4 ILIVDDEEKIRFLIDTYAKHEGYLTVLASNGLEALEKLKMHSIDLVVMDVMMPELDGFSA 63 Query: 65 ARRATELDPDLKVMFITGFA 84 + L P+L V+ +T Sbjct: 64 LEKMKALQPNLPVILLTALG 83 >gi|226525292|gb|ACO70891.1| putative PAS/PAC sensor protein [uncultured Verrucomicrobia bacterium] Length = 886 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 2/82 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++LL +D+ + R + L + GYEV +C A+A + +R++ F ++LTD+ MP+M G Sbjct: 753 RVLLVDDELPVLRVAEQLLQRLGYEVTACCGPAAALEILRQDTTFFDVVLTDLNMPQMTG 812 Query: 62 IELARRATELDPDLKVMFITGF 83 ++A + P++ ++ TG+ Sbjct: 813 TDVAAEIRRIAPEIGIVLATGY 834 >gi|260769509|ref|ZP_05878442.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio furnissii CIP 102972] gi|260614847|gb|EEX40033.1| C4-dicarboxylate transport transcriptional regulatory protein [Vibrio furnissii CIP 102972] Length = 462 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 53/102 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L EDDD +R+ + L AG++V +G +A + + + F+ +++D+ +P+ DG+E+ Sbjct: 9 IALIEDDDIVRQATSQWLQLAGFDVCGFADGRAALEGLAAQRFATIISDVRLPDYDGVEM 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 L P V+ ITG V + + + KPF+ Sbjct: 69 LSELKCLQPHTPVILITGHGDVDMAVKALQKGAYDFIEKPFN 110 >gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus ATCC 53653] gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LLAEDD +R L +AL GY V S ++G A + E +++ D++MP +D Sbjct: 1 MTNTVLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMPGVD 60 Query: 61 GIELAR 66 GI++ R Sbjct: 61 GIQVCR 66 >gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)] gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)] Length = 224 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 54/114 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + RF+ + L G+++ +G + V+ LL+ D ++P +DG+ Sbjct: 2 RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + ++ ++ V L+KPFH +L+ + L Sbjct: 62 LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEAL 115 >gi|224537165|ref|ZP_03677704.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM 14838] gi|224521220|gb|EEF90325.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM 14838] Length = 1288 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ D+R FL K + Y ++ NG A++ +++E L+++D++MP+MDG EL Sbjct: 1043 ILIVDDNKDLRNFL-KCSFENQYNILEAGNGNEAWELLQKESPELIISDVMMPDMDGFEL 1101 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++T + V+ +T + + ++KPF + L + L+ Sbjct: 1102 CKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLM 1157 >gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] Length = 732 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + + K + K G EV C NG +A + + P L+L D+ MPEM+G E Sbjct: 577 RILVAEDNRTNQLVIRKMIEKHGAEVEICANGQAAVESFAQSPPDLVLMDVSMPEMNGYE 636 Query: 64 LARRATE 70 RR E Sbjct: 637 ATRRIRE 643 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 ++L+ +D + R L K L +VV NG A + + +EEPF L + D MP MDG Sbjct: 435 RVLVVDDLEVNRLILQKTLTSWQAQVVLAENGPHALECLEKEEPFDLAILDFQMPGMDGN 494 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFH 106 L R E P + M + ++V DS K A L KP Sbjct: 495 MLLERFRE-HPSAQKMPVVLLSSVDAGLDSGKTKGLGFAASLLKPMR 540 >gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905] gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905] Length = 225 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 51/115 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD +R + L G +V+ +G A K+ E +++ DI+MP MDG Sbjct: 3 KLLMVDDDAHIRELVKVFLQNEGLDVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWA 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + DL ++ +T A L KPF +L+ V +L Sbjct: 63 LCEEIRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSIL 117 >gi|254226511|ref|ZP_04920095.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae V51] gi|125620968|gb|EAZ49318.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae V51] Length = 686 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 568 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 628 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 655 >gi|153801446|ref|ZP_01956032.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae MZO-3] gi|124123021|gb|EAY41764.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae MZO-3] Length = 686 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 568 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 628 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 655 >gi|90021836|ref|YP_527663.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] gi|89951436|gb|ABD81451.1| sigma-54 factor, interaction region [Saccharophagus degradans 2-40] Length = 497 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KI++ EDD D+R ++ L AG+ VV + A + + P L+++D+ M M G Sbjct: 21 KIMVVEDDLDLREAVVDTLDLAGFSVVQAASAEQALELLEASPDQDLIISDVNMGAMSGH 80 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLL 118 +L R+ P + V+ +T +A++ N A K V L KPF + L++ V +++ Sbjct: 81 DLLRKVRTDYPQIPVVLVTAYASI--NDSVVAMKEGAVDYLVKPFETQVLIDTVKKVV 136 >gi|126175016|ref|YP_001051165.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella baltica OS155] gi|125998221|gb|ABN62296.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS155] Length = 459 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L++ G + ++ + ++ ++++D+ MP++DGI L Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKALATTEPKGIAKHLHKDWAGMVISDVNMPQLDGISL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV--NRLLT 119 ++ DPDL V+ +TGF +A+ ++ L KPF H+ D+V R LT Sbjct: 72 MQQIRLQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHILDVVKRALDKRSLT 131 Query: 120 IKN 122 ++N Sbjct: 132 LEN 134 >gi|327440423|dbj|BAK16788.1| response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Solibacillus silvestris StLB046] Length = 514 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KI++ EDD +RR + + + G+ EVV ++G A + + + L+++DI MP ++ Sbjct: 3 KIIVVEDDRIIRRGICQTIPWGENRIEVVGEASDGEMALELIAQHQPHLVISDINMPFLN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+++AR+ E+ P K +F+TG+ + + K L KP L+ +V L Sbjct: 63 GLDMARQLKEISPQTKFIFLTGYEDFSYAQQAVQLKAFDYLLKPVDSELLLEKVKEAL 120 >gi|323483866|ref|ZP_08089243.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323692869|ref|ZP_08107094.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323402820|gb|EGA95141.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323503044|gb|EGB18881.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 225 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 51/114 (44%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R L ++GY V + G A + + E L+++DI+MP MDG EL Sbjct: 4 ILVVEDDAKLRSLFCTVLNRSGYLTVPASGGREALELLDSEYIDLIISDIMMPGMDGYEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R L ++ IT + + KP + ++V V LL Sbjct: 64 IRTLRGNGYSLPILIITAKERFEDKQEGFQAGTDDYMVKPIDVNEMVLRVGALL 117 >gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+DD ++ L L K GYEV NG A DK L++ D++MPE+DG+E Sbjct: 3 KILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEIDGLE 62 Query: 64 LARR 67 + R+ Sbjct: 63 VCRQ 66 >gi|283786167|ref|YP_003366032.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282949621|emb|CBG89240.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 445 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +DD + + L L GY VV+ +GA + E L+++D+ M EMDG++L Sbjct: 9 LLLVDDDPGLLKLLGMRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 ++ P + V+ +T ++ PD+ A V S Sbjct: 69 FSEIQKVQPGMPVIILTAHGSI---PDAVAATQKGVFS 103 >gi|255523235|ref|ZP_05390206.1| response regulator receiver protein [Clostridium carboxidivorans P7] gi|296186198|ref|ZP_06854603.1| chemotaxis protein CheY [Clostridium carboxidivorans P7] gi|255513103|gb|EET89372.1| response regulator receiver protein [Clostridium carboxidivorans P7] gi|296049466|gb|EFG88895.1| chemotaxis protein CheY [Clostridium carboxidivorans P7] Length = 117 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +D MR L L K GYEVV NGA A K ++ DI MP+MDG Sbjct: 2 KKVLIVDDAMFMRVALKTMLEKNGYEVVGEAENGADAISKYSILKPDIVTMDITMPKMDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +E + DP+ K++ I+ + + + KPF ++ +++L Sbjct: 62 VEALTEIKKQDPNCKIVMISALGQESWVKKAIIIGAKGFIVKPFKEEHVIKTLSKL 117 >gi|218674659|ref|ZP_03524328.1| two-component response regulator protein [Rhizobium etli GR56] Length = 185 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMD 60 + +L+ +DD +R+ L + GY V S +GA ++R++ F +L D+V+P D Sbjct: 7 DAHLLVVDDDPRIRQMLTRYFEDEGYTVSSAADGAEMRVRLRQQNFDAVLLDLVLPGGAD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++LAR D+ +M +TG V ++KPFHLR++ + +L Sbjct: 67 GLDLARE-IRAQSDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSIL 123 >gi|167622552|ref|YP_001672846.1| two component Fis family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352574|gb|ABZ75187.1| two component transcriptional regulator, Fis family [Shewanella halifaxensis HAW-EB4] Length = 184 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 61/115 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ EDD + L++ + K G+E C++ R+ + LL D+ + + + Sbjct: 1 MTKKLLIIEDDIALASVLVRRMTKQGFECQQCHDATQGLLLARQFRPTHLLLDMKLDQEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G++L +L PD+ ++ +TG+A++A ++ L+KP + L N ++ Sbjct: 61 GLKLISPLRQLLPDVVMVLLTGYASIATAVEAIRLGADNYLAKPVDTQTLFNALS 115 >gi|149202614|ref|ZP_01879586.1| nitrogen regulation protein NtrC [Roseovarius sp. TM1035] gi|149143896|gb|EDM31930.1| nitrogen regulation protein NtrC [Roseovarius sp. TM1035] Length = 453 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG V + ++ + V E ++++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCRVHATSSLTTLMRWVGEGKGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ + + P L V+ I+ + + + L KPF L DL+ R L Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPDLMKRTARAL 118 >gi|147920988|ref|YP_685202.1| putative response regulator (CheY-like) [uncultured methanogenic archaeon RC-I] gi|110620598|emb|CAJ35876.1| putative response regulator (CheY-like) [uncultured methanogenic archaeon RC-I] Length = 132 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KI++ +D+ D+ + L GYEVV+ +G A +K+ E L+L DI+MP+MD Sbjct: 1 MANKIMIVDDEPDVVDLVKIVLKSEGYEVVTATSGKEALEKIGNEMPDLVLLDIMMPQMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ ++ D+ V +T + ++ + + ++KPF +L+ V ++ Sbjct: 61 GWEVYNHIKSNTKTRDIPVAMLTAKSQSIDKMIGLHVVQVDDYITKPFGRAELLERVKKI 120 Query: 118 LTIKN 122 LT K Sbjct: 121 LTEKG 125 >gi|331081991|ref|ZP_08331119.1| hypothetical protein HMPREF0992_00043 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405586|gb|EGG85116.1| hypothetical protein HMPREF0992_00043 [Lachnospiraceae bacterium 6_1_63FAA] Length = 508 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 4/84 (4%) Query: 4 KILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +IL+ +D+ R +FL+K G EV +NG A + ++ + +LLTDI MP + Sbjct: 3 RILIVDDEKLERNGIKFLLKKTGTE-LEVFEASNGRDALELLKHQTVEILLTDIKMPYVS 61 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+ELA + + P++K++ +G++ Sbjct: 62 GLELAEKVSSQYPEMKIVMFSGYS 85 >gi|330807609|ref|YP_004352071.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375717|gb|AEA67067.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 795 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL +D + +L L G++V NG A + E+ LL++D +MP MDG Sbjct: 667 KHVLLVDDIEQNSEWLYDLLAGYGFDVSMAANGEDALACLAEQSVDLLISDQMMPGMDGW 726 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 EL R+ + DL VM ++AV N P++ VL KP R+L+ V L Sbjct: 727 ELLRQVRDGPRDLPVML---YSAVPPRRPENYPQDLAFDAVLLKPADSRELLACVKAL 781 >gi|325845663|ref|ZP_08168946.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325488264|gb|EGC90690.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 99 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD R+ L L + GY V + +G + + + L++ DI+MP+MDG E+ Sbjct: 4 ILVAEDDKHARKLLETLLKREGYTVFTAEDGEKVLEILSIQHIDLIILDIMMPKMDGFEV 63 Query: 65 ARRATELDPDLKVMFITG 82 AR E + + ++ T Sbjct: 64 ARLLREANFTMPILMTTA 81 >gi|320353527|ref|YP_004194866.1| putative Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122029|gb|ADW17575.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 450 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + +L DD RFL++ L AGY V A + + L+L+D++MP+M Sbjct: 1 MAGETILIVDDKSSFRFLVQGYLKDAGYATVCAGGAVEALELLDRMAIDLMLSDLIMPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+ L P L + IT +V + L KP H +L+ + R L Sbjct: 61 DGVALLAEVQRRFPHLPFVVITAHGSVESAVTAMKQGADDYLLKPLHREELLLTIGRSL 119 >gi|319955728|ref|YP_004166995.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319424388|gb|ADV51497.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 237 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 47/82 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N+KILL EDD + L L ++VV NG ++K +++ + + + D++MP D Sbjct: 4 VNKKILLVEDDPNFGIVLKDYLSMNDFDVVLAKNGMEGFEKFKKDNYDICILDVMMPYKD 63 Query: 61 GIELARRATELDPDLKVMFITG 82 G LA+ E + ++ ++F+T Sbjct: 64 GFTLAKEIREKNENVPIVFLTA 85 >gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208] Length = 222 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD + + + L G+ V+ +G A V E L + D++MP MDG EL Sbjct: 1 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGFEL 60 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 61 CQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 118 >gi|301023116|ref|ZP_07186923.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1] gi|300397237|gb|EFJ80775.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNNSGAQVVAVGNAAHAIETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697] gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697] Length = 1334 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ ED++++R L + K Y V +G ++K +E ++L+DI+MP+M GIE Sbjct: 1085 KIIIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ + V+ +T A ++KPF+++ L N L+ Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200 >gi|212691672|ref|ZP_03299800.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855] gi|265753202|ref|ZP_06088771.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|212665861|gb|EEB26433.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855] gi|263236388|gb|EEZ21883.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1386 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 3/64 (4%) Query: 5 ILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL ED++++ +++ L GK Y ++ NG A + + ++ L+++D++MPEMDG+E Sbjct: 1137 ILLVEDNEELLALMVRLLHGK--YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194 Query: 64 LARR 67 L RR Sbjct: 1195 LCRR 1198 >gi|220919447|ref|YP_002494751.1| response regulator receiver modulated PilZ sensor protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219957301|gb|ACL67685.1| response regulator receiver modulated PilZ sensor protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 487 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 ++ L+ +DD +RR L AL G+EV++ + + EE LL+TD+ MP MD Sbjct: 355 RRALVVDDDALLRRMLADALTGRGFEVLTAADATEGLRVLAEEVLALDLLVTDVRMPGMD 414 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNP 90 G EL RR + + DL ++ +TG L P Sbjct: 415 GAELVRRIRTVGGEADLAIVAVTGRLEEGLEP 446 >gi|197122437|ref|YP_002134388.1| response regulator receiver modulated metal dependent phosphohydrolase [Anaeromyxobacter sp. K] gi|220917204|ref|YP_002492508.1| response regulator receiver modulated metal dependent phosphohydrolase [Anaeromyxobacter dehalogenans 2CP-1] gi|196172286|gb|ACG73259.1| response regulator receiver modulated metal dependent phosphohydrolase [Anaeromyxobacter sp. K] gi|219955058|gb|ACL65442.1| response regulator receiver modulated metal dependent phosphohydrolase [Anaeromyxobacter dehalogenans 2CP-1] Length = 357 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L + GY + + +A D+ R+ + L+++D+ MP DG Sbjct: 10 RILIVDDDAAVRDVITVLLREEGYVCTTVASAEAALDEARKTDYPLVISDVRMPARDGFW 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD V+ +T + + A L KP + +L+ + R L Sbjct: 70 LLEQMREASPDTAVIMLTAYGDTEAAVECLRNGAADYLLKPPKVTELIRAIERAL 124 >gi|153825864|ref|ZP_01978531.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae MZO-2] gi|149740464|gb|EDM54587.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae MZO-2] Length = 660 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 542 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 601 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 602 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 629 >gi|217972725|ref|YP_002357476.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella baltica OS223] gi|304409853|ref|ZP_07391472.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS183] gi|307307853|ref|ZP_07587580.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica BA175] gi|217497860|gb|ACK46053.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS223] gi|304351262|gb|EFM15661.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS183] gi|306910043|gb|EFN40482.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica BA175] Length = 459 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L++ G + ++ + ++ ++++D+ MP++DGI L Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKALATTEPKGIAKHLHKDWAGMVISDVNMPQLDGISL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV--NRLLT 119 ++ DPDL V+ +TGF +A+ ++ L KPF H+ D+V R LT Sbjct: 72 MQQIRLQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHILDVVKRALDKRSLT 131 Query: 120 IKN 122 ++N Sbjct: 132 LEN 134 >gi|119488052|ref|ZP_01621496.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119455341|gb|EAW36480.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1106 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R LI L G+++V +G +K +++TD+VMP+MDG E+ Sbjct: 903 ILVVDDRWDNRSILINMLEPLGFQLVEATHGEEGVEKAIICQPDIIITDLVMPQMDGFEM 962 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRD 109 R+ ++ P+ K I +A + D + + L KP L D Sbjct: 963 TRKLRQI-PEFKHTNIIATSASVFSLDRQKSQESGCDAFLPKPLQLED 1009 >gi|114798578|ref|YP_761819.1| sensory box sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114738752|gb|ABI76877.1| sensory box sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 893 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVM-PEMDGI 62 +L+ EDD +R GY V+ + A + P + LL TD+++ M+GI Sbjct: 771 VLIVEDDPLVREHAAHNFEALGYTVILTASADEALTALEGHPETYLLFTDVILGAGMNGI 830 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELA A + PDL V++ +G+ S A++L KP+ +LV ++ R+ Sbjct: 831 ELAAEARKRRPDLNVLYTSGYVPGDHGFTSPLEPGAEMLRKPYERNELVRKLGRIF 886 >gi|160876063|ref|YP_001555379.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella baltica OS195] gi|160861585|gb|ABX50119.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS195] gi|315268259|gb|ADT95112.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS678] Length = 459 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L++ G + ++ + ++ ++++D+ MP++DGI L Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKALATTEPKGIAKHLHKDWAGMVISDVNMPQLDGISL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV--NRLLT 119 ++ DPDL V+ +TGF +A+ ++ L KPF H+ D+V R LT Sbjct: 72 MQQIRLQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHILDVVKRALDKRSLT 131 Query: 120 IKN 122 ++N Sbjct: 132 LEN 134 >gi|88601444|ref|YP_501622.1| response regulator receiver domain-containing protein [Methanospirillum hungatei JF-1] gi|88186906|gb|ABD39903.1| response regulator receiver domain protein (CheY-like) [Methanospirillum hungatei JF-1] Length = 120 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +ILL +D MRR + K G+E+V G A D + L++ DI+MP+M+G+ Sbjct: 3 RILLVDDAGYMRRLVGIMATKGGHEIVGEAETGQIAIDLYEKVKPDLVILDILMPDMNGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E ++ E+DPD +V+ T A S+ + + +K + ++ EV L TI+N Sbjct: 63 EALKKIREIDPDARVLMCT-----ASEQSSHVQEALSLGAKGYIVKPFTKEVI-LSTIEN 116 >gi|86157804|ref|YP_464589.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774315|gb|ABC81152.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 122 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R L AGYEV+ +G A K+ P L+LTD+ MP +D Sbjct: 1 MPRCVLVVDDSASVRLAERVVLTGAGYEVLEAVDGQDALAKLAARPVQLVLTDLNMPNLD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ L RA DP + V+ +T + A + A + KPF L+ RL Sbjct: 61 GVGLI-RAVRADPAHRLTPVVMVTTESEQARKQEGKAAGATGWIVKPFSPEQLLAVAARL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|86607343|ref|YP_476106.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555885|gb|ABD00843.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 121 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED R + K L + G+EV++ +G A + V++ L++ DIVMP M+G E Sbjct: 3 RVLVVEDSQSQREMIGKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNGYE 62 Query: 64 LAR--RATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R +A L ++ + L ++A ++KPF ++LV + + Sbjct: 63 VCRLLKADPLTQKTPIVMCSSKGEEFDRYWGLRQGADA-----YIAKPFQPQELVGTIKQ 117 Query: 117 LL 118 LL Sbjct: 118 LL 119 >gi|34558101|ref|NP_907916.1| two-component response regulator [Wolinella succinogenes DSM 1740] gi|34483819|emb|CAE10816.1| TWO-COMPONENT RESPONSE REGULATOR [Wolinella succinogenes] Length = 215 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ +R L + L G+EV C G A +PF L L D+ P+ G E Sbjct: 2 KILLLEDERMLRESLREYLETLGHEVKECEGGEKALALGLSQPFDLFLFDVSTPQKSGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDL 110 +A+ + ++F+T A V + S + + + KPFHL++L Sbjct: 62 VAKELSSRRILTPLIFMT--ARVEIEDISKGFELGCIDYIKKPFHLKEL 108 >gi|113972200|ref|YP_735993.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. MR-4] gi|114049450|ref|YP_740000.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. MR-7] gi|113886884|gb|ABI40936.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. MR-4] gi|113890892|gb|ABI44943.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. MR-7] Length = 476 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V +++R F LL+ DI +P GIE Sbjct: 33 VLIVDDEPGMRSFLNKALSKK-FALVETAGSIEDAEQLRSRCHFDLLIVDIRLPGRSGIE 91 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E V+F+TG+A + + + + + KPFHL +++ V+R + Sbjct: 92 WHEALDEQGRRSDVIFMTGYADLEVAIKALRAGASDFIMKPFHLEQMMSAVDRCI 146 >gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL EDD ++ + K L K G++V ++G D + F L++ DI+MP++D Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLD 60 Query: 61 GIELAR 66 G+E+ R Sbjct: 61 GLEVVR 66 >gi|15599743|ref|NP_253237.1| two-component response regulator PilR [Pseudomonas aeruginosa PAO1] gi|107099789|ref|ZP_01363707.1| hypothetical protein PaerPA_01000807 [Pseudomonas aeruginosa PACS2] gi|116052693|ref|YP_793009.1| two-component response regulator PilR [Pseudomonas aeruginosa UCBPP-PA14] gi|254244554|ref|ZP_04937876.1| two-component response regulator PilR [Pseudomonas aeruginosa 2192] gi|313107193|ref|ZP_07793392.1| two-component response regulator PilR [Pseudomonas aeruginosa 39016] gi|12231026|sp|Q00934|PILR_PSEAE RecName: Full=Type 4 fimbriae expression regulatory protein pilR gi|9950791|gb|AAG07935.1|AE004868_6 two-component response regulator PilR [Pseudomonas aeruginosa PAO1] gi|45401|emb|CAA78139.1| transcriptional activator of pilA [Pseudomonas aeruginosa PAO1] gi|115587914|gb|ABJ13929.1| two-component response regulator PilR [Pseudomonas aeruginosa UCBPP-PA14] gi|126197932|gb|EAZ61995.1| two-component response regulator PilR [Pseudomonas aeruginosa 2192] gi|310879894|gb|EFQ38488.1| two-component response regulator PilR [Pseudomonas aeruginosa 39016] Length = 445 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QK L+ +D+ D+R L LG+ + S N A + + EPF L LTD+ +P+ G Sbjct: 3 RQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 ++L + + P V IT + ++ + L+KP LR+LV RL Sbjct: 63 LDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRL 121 >gi|328952978|ref|YP_004370312.1| response regulator receiver modulated diguanylate cyclase [Desulfobacca acetoxidans DSM 11109] gi|328453302|gb|AEB09131.1| response regulator receiver modulated diguanylate cyclase [Desulfobacca acetoxidans DSM 11109] Length = 392 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 12/122 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D L L Y V NG A DK+ E +L+++DI MPEMDG E Sbjct: 22 EILVVDDCPVQAELLRYILENQKYLVSIARNGQEALDKLEERRPTLVISDIAMPEMDGFE 81 Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 L RR +D DL V+ +T +LN S+ + K +SKP+ L++ + Sbjct: 82 LCRRIKAVDRFKDLPVIILT-----SLNDLSHVMQGLKCGTDNFISKPYSAEFLLSRIRH 136 Query: 117 LL 118 +L Sbjct: 137 VL 138 >gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 249 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 12/128 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59 M +IL+A+DD ++ + AL G+E V NG +++ E+P L + DI+MPEM Sbjct: 23 MQNRILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEM 82 Query: 60 DGIELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 DG+E R E D V+ ++ + L ++ +SKPF + +L+ V Sbjct: 83 DGLETLRHIRE-RTDAPVLILSARGREIDKVIGLRVGAD-----DYVSKPFSVDELMARV 136 Query: 115 NRLLTIKN 122 L +N Sbjct: 137 GAHLRREN 144 >gi|288925563|ref|ZP_06419496.1| putative response regulator receiver domain protein [Prevotella buccae D17] gi|288337779|gb|EFC76132.1| putative response regulator receiver domain protein [Prevotella buccae D17] Length = 1363 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 4/112 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMD 60 N +ILL +DD ++ R++ LG Y S NG A K+ + + L+++D++MPEMD Sbjct: 1108 NFRILLVDDDPEIARYIAGELGD-WYRFDSAPNGKEALKKLLGDTGYDLVISDVMMPEMD 1166 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ L ++ D+ V+ +T + V + L+KPF++ +L Sbjct: 1167 GVTLVKKIKTNSNISDIPVILLTSKSEVENRLEGLKKGADAFLAKPFNMEEL 1218 >gi|260220092|emb|CBA27284.1| hypothetical protein Csp_A01510 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1956 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 40/62 (64%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +RR + L + GY V N+G A +K++EE +++L+DI MP MDG +L Sbjct: 1835 VLVVDDSITVRRVTQRLLKREGYRVALANDGLQALEKLQEEIPAVVLSDIEMPRMDGFDL 1894 Query: 65 AR 66 AR Sbjct: 1895 AR 1896 >gi|237711967|ref|ZP_04542448.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454662|gb|EEO60383.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1383 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 3/64 (4%) Query: 5 ILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL ED++++ +++ L GK Y ++ NG A + + ++ L+++D++MPEMDG+E Sbjct: 1134 ILLVEDNEELLALMVRLLHGK--YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1191 Query: 64 LARR 67 L RR Sbjct: 1192 LCRR 1195 >gi|237725777|ref|ZP_04556258.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435585|gb|EEO45662.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1386 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 3/64 (4%) Query: 5 ILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL ED++++ +++ L GK Y ++ NG A + + ++ L+++D++MPEMDG+E Sbjct: 1137 ILLVEDNEELLALMVRLLHGK--YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194 Query: 64 LARR 67 L RR Sbjct: 1195 LCRR 1198 >gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1] gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 223 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ +E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|218781801|ref|YP_002433119.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763185|gb|ACL05651.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 681 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N++ILL +D+ + R + L + GY+V N+ A +E P F ++TD+ MP + Sbjct: 550 NERILLVDDEASVLRTVNMMLERLGYQVTPYNDALEALKAFKERPEDFDAIVTDMTMPGL 609 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 G+ LA A + P + V+ TG++ Sbjct: 610 TGVLLAEEAIAVKPGVPVVLCTGYS 634 >gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 513 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 49/106 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 392 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 451 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R +L L V+ +T A LSKP L L Sbjct: 452 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDAL 497 >gi|254409902|ref|ZP_05023682.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182938|gb|EDX77922.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1258 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 9/122 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ + L + GY NG + ++ +P+ ++ D+ MPEMDG+E Sbjct: 962 RILLAEDNPVNQQVALHLLQRMGYRADVAGNGLEVLEALQRQPYDVVFMDVQMPEMDGLE 1021 Query: 64 LARRATELDPDL---------KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +RR + DL +++ +T A V +SKP + +LV + Sbjct: 1022 ASRRICQEWCDLDGKTQSQRPRIIAMTANAMVGDREMCIEAGMDDYISKPIRIEELVEAL 1081 Query: 115 NR 116 + Sbjct: 1082 KK 1083 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q++L+ +D+D R+ L++ G E + +G A D + + E F L + D+ MPEMDG Sbjct: 816 QRLLIVDDNDTNRKILMRQAQVWGMECYAAQSGVQALDWLHQGERFDLAILDMQMPEMDG 875 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 + LA++ +L L ++ ++ + ++ A L+KP L + Sbjct: 876 VTLAQKIRKLPGCQTLPLVMLSSLGELQVDTPDVKQTFAGFLTKPIKQSQLCD 928 >gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 948 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 948 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 948 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|163795226|ref|ZP_02189194.1| response regulator receiver protein [alpha proteobacterium BAL199] gi|159179624|gb|EDP64153.1| response regulator receiver protein [alpha proteobacterium BAL199] Length = 129 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 48/82 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++D+R + + L G++V+ +G +++ +++TDI+MP +G+E Sbjct: 4 ILVIDDNEDLRAVIRRTLEAVGHQVLDAQDGRQGLKLLQQHAPQVMITDILMPTKEGLET 63 Query: 65 ARRATELDPDLKVMFITGFAAV 86 R A L P L ++ ++G ++ Sbjct: 64 IREAKALKPQLAIIAMSGGGSM 85 >gi|1122856|emb|CAA63920.1| TorS [Escherichia coli K-12] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|78357413|ref|YP_388862.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219818|gb|ABB39167.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 795 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ +D+ + + L GY ++ A A V P F+L+LTD MP+M G Sbjct: 675 VLVVDDEKALAGVMADMLQSMGYTPRIADSPAQALHMVSRAPQEFALVLTDQTMPDMTGT 734 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ELA R + PDL V+ TGF+ + +++L KP DL Sbjct: 735 ELAARLHAVRPDLPVILCTGFSEGLTREAARKAGISELLLKPVLRGDL 782 >gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with RcsB, regulates colanic capsule biosynthesis [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 948 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80] gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52] gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395] gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587] gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457] gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33] gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2] gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2] gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33] gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9] gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51] gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101] gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27] gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80] gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52] gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587] gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51] gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457] gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33] gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395] gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2] gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2] gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395] gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9] gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33] gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10] gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101] gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27] gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4] Length = 224 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 54/114 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + RF+ + L G+++ +G + V+ LL+ D ++P +DG+ Sbjct: 2 RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + ++ ++ V L+KPFH +L+ + L Sbjct: 62 LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEAL 115 >gi|332709672|ref|ZP_08429631.1| chemotaxis protein, histidine kinase family [Lyngbya majuscula 3L] gi|332351499|gb|EGJ31080.1| chemotaxis protein, histidine kinase family [Lyngbya majuscula 3L] Length = 844 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R+ K L GYEV NG ++ VR P+ L+++DI MP M+GI Sbjct: 724 KRILVVDDSITVRQMERKLLENQGYEVEIAVNGMDGWNAVRTNPYDLVISDIDMPRMNGI 783 Query: 63 EL 64 EL Sbjct: 784 EL 785 >gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 717 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDG 61 +ILLAED+ ++ + L KAGY+V +NG A D R E F L+L DI MPEMDG Sbjct: 594 RILLAEDNPVNQKLAVLILNKAGYQVEVASNGRKAVDLFTRRPENFDLILMDIQMPEMDG 653 Query: 62 I 62 + Sbjct: 654 L 654 >gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 12/120 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + L +ALG+ GYEV++ + G A V E L++ D+ +P+MDG++ Sbjct: 3 RVLLVEDDPAISEPLARALGREGYEVLASSTGREALTNV--EGADLVVLDLGLPDMDGLD 60 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR + ++ +T V L+ ++ ++KPF L +L+ V LL Sbjct: 61 VAREIRADGGRVPILILTARTDEVDMVVGLDAGAD-----DYVTKPFRLAELLARVRALL 115 >gi|322434967|ref|YP_004217179.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] gi|321162694|gb|ADW68399.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] Length = 129 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+D+ + L L +AG+E + +G A + + +L++D++M M GIE Sbjct: 13 KVLVADDEQVIANTLAIILNQAGFEARAVYSGEKAIESLDTFEPDMLISDVIMTGMTGIE 72 Query: 64 LARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 A P+ K++ +G AA A L ++L+KP H DL+ ++ R Sbjct: 73 AAIATRAKRPNCKILLFSGQAATADLLEKARAQGHEFEILAKPVHPTDLLAKLRR 127 >gi|317151882|ref|YP_004119930.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316942133|gb|ADU61184.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 248 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 5/98 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +D+ + L YEV++ NG + +E L+LTDI MP MD Sbjct: 6 VKETILVIDDERPTLKMFTLLLSALNYEVITAENGLEGLNLFKEHHPPLVLTDIKMPVMD 65 Query: 61 GIELARRATELDPDLKVMFITG-----FAAVALNPDSN 93 GIE+ + +++P +V+ ITG A ALN D+ Sbjct: 66 GIEVLKEIKKINPMAEVVVITGHGDMDLAIQALNLDAT 103 >gi|224537021|ref|ZP_03677560.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM 14838] gi|224521329|gb|EEF90434.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM 14838] Length = 1332 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+++ + + L Y +++ NG A + VR E L+++D +MPEMDGIEL Sbjct: 1083 ILLVDDNEEFLLLMKRKLA-THYNILTATNGKKALEIVRSEDVDLMVSDYMMPEMDGIEL 1141 Query: 65 -ARRATELDPD-LKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLL 118 A +++ + V+ +T ++V NA N L+KPF ++ L ++ L+ Sbjct: 1142 CATMKQDINTSHIPVLMLTAKSSVEDQVRCFNAGANG-YLTKPFDMKMLNARIDNLM 1197 >gi|198274925|ref|ZP_03207457.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135] gi|198272372|gb|EDY96641.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135] Length = 1373 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+ ED+ DMRR+L + L K Y V+ NG E+ L+L+D++MP MDG Sbjct: 1119 QTVLIIEDNTDMRRYL-RDLMKKHYRVLEAENGEEGVKVAVEQVPDLVLSDVMMPVMDGF 1177 Query: 63 ----ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL +R + ++ +T A + +++ + KPF+ L+ +V LL Sbjct: 1178 TCCAELRKRKET--AHIPILLLTAKAEDKDSVEASYRGADDYVRKPFNPEVLLAKVAHLL 1235 Query: 119 TIK 121 ++ Sbjct: 1236 DMR 1238 >gi|253699795|ref|YP_003020984.1| diguanylate cyclase [Geobacter sp. M21] gi|251774645|gb|ACT17226.1| diguanylate cyclase [Geobacter sp. M21] Length = 459 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD R L + GY V +G A + + + + L++TD+VM ++ G+ Sbjct: 2 ERILLVEDDSFFREIFTDLLKEDGYSVEVAVSGEEALEMIGKGGYHLVVTDLVMRDVSGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 ++ LDP V+ +TG A V Sbjct: 62 DILSTVKRLDPATAVIMVTGHANV 85 >gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 226 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ + RF+ L GY+V+ +NG + + L++ D+++PE++G+E Sbjct: 3 KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NRLL 118 + RR + ++ ++ +T AV ++KPF + +L+ + R+ Sbjct: 63 VLRRIRRV-SEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121 Query: 119 TIKN 122 T+K Sbjct: 122 TVKK 125 >gi|218780262|ref|YP_002431580.1| multi-sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761646|gb|ACL04112.1| multi-sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 504 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 53/103 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D+R + L + EV + G A + + S++ D+ MP +DG+E Sbjct: 9 QILVVDDEKDIRDGCERILIRMDCEVQKASRGEEALEIMETWRPSIVFLDLKMPGIDGME 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 + RR E D D+ V+ ITG+A V ++ + KPF Sbjct: 69 VLRRIHEKDTDILVIVITGYATVETAIEAMKQGAYDFIPKPFE 111 >gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 220 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R + L GY V+S G A+ V++ LL+TDI MP+MDG EL Sbjct: 5 VLIVDDEPGIRLAVTDYLEAVGYTVISAATGKQAWQLVQQYRPHLLVTDIRMPQMDGYEL 64 Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + P + V+++T + L+KPF+L +L + LL Sbjct: 65 VKLVRQ-QPAFRLLPVIYLTECSQTQERIRGYKLGCDAYLAKPFNLEELAAVIRNLL 120 >gi|157376076|ref|YP_001474676.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3] gi|157318450|gb|ABV37548.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3] Length = 1169 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ +LLAED + L K+G+EV NNG A + ++ + L+L D+ MPEMDG Sbjct: 879 NRLLLLAEDSPSNQIVAGAMLTKSGFEVEYANNGVEAVNMAAQKNYGLILMDMRMPEMDG 938 Query: 62 IELARRATELDPDLKVMFITG 82 +E + PD ++ +T Sbjct: 939 VEATKNILLHQPDTIILAMTA 959 >gi|150003189|ref|YP_001297933.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|254882475|ref|ZP_05255185.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319640424|ref|ZP_07995146.1| sensor protein [Bacteroides sp. 3_1_40A] gi|149931613|gb|ABR38311.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|254835268|gb|EET15577.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387911|gb|EFV68768.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1386 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 3/64 (4%) Query: 5 ILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL ED++++ +++ L GK Y ++ NG A + + ++ L+++D++MPEMDG+E Sbjct: 1137 ILLVEDNEELLALMVRLLHGK--YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194 Query: 64 LARR 67 L RR Sbjct: 1195 LCRR 1198 >gi|94498447|ref|ZP_01305004.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Sphingomonas sp. SKA58] gi|94422095|gb|EAT07139.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Sphingomonas sp. SKA58] Length = 653 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 13/119 (10%) Query: 5 ILLAEDDDDMRRFLIKALG---KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LA DDDD+ L G G+ V + A A + + +++TD MP M G Sbjct: 526 VILAVDDDDL--VLTNTAGMLEDLGHTVFRAGSAADALRMLEQSRIDMVVTDHAMPGMTG 583 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEVNRL 117 +LA E P L V+ ITGFA + + S+ P+ L KPF L LVN+V L Sbjct: 584 AQLADAIEEAHPHLPVIIITGFAELPAH-SSSRPR----LDKPFRQAQLARLVNQVGAL 637 >gi|83720536|ref|YP_443677.1| chemotaxis response regulator [Burkholderia thailandensis E264] gi|167582717|ref|ZP_02375591.1| chemotaxis response regulator [Burkholderia thailandensis TXDOH] gi|167620831|ref|ZP_02389462.1| chemotaxis response regulator [Burkholderia thailandensis Bt4] gi|83654361|gb|ABC38424.1| chemotaxis response regulator [Burkholderia thailandensis E264] Length = 126 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 5/80 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D MR L LG+AGY+V ++G D PF L+LTD MP+ + Sbjct: 1 MIRTILAIDDSATMRTLLSATLGEAGYDVTVASDGEVGLDVAMATPFDLVLTDHYMPKKN 60 Query: 61 GIEL-----ARRATELDPDL 75 G+EL A+ A E P L Sbjct: 61 GLELIAALRAQSAYEATPIL 80 >gi|78356567|ref|YP_388016.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218972|gb|ABB38321.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 544 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD R+ + K G+ V + G + +EPF L+L DI MP+MDG+E Sbjct: 419 RILLAEDDIINRKLAVFFFEKMGHAVRAVGTGIEVLQALAQEPFDLILMDIQMPDMDGVE 478 Query: 64 LAR-----RATELDPDLKVMFITGFA 84 R + + D+ ++ +T A Sbjct: 479 ATRAIRSAQGGRIRSDIPIIAMTAHA 504 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 49/101 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L +D+ +R+ L GYEV+ ++G + E ++L D+ MP +DGIE Sbjct: 12 RVLAIDDESSVRQSLAIFFEDCGYEVLEASDGYEGIETALRERPDVILVDLRMPGIDGIE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 + RR + PD + ++G + ++ +SKP Sbjct: 72 VLRRLSSELPDTPAIAVSGVGVLEQALEAMRSGAWDFISKP 112 >gi|21910738|ref|NP_665006.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|71903881|ref|YP_280684.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|21904942|gb|AAM79809.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|71802976|gb|AAX72329.1| two-component response regulator [Streptococcus pyogenes MGAS6180] Length = 246 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|86140887|ref|ZP_01059446.1| sigma-54 dependent DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] gi|85832829|gb|EAQ51278.1| sigma-54 dependent DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] Length = 440 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +DD + L + L Y + A +++ LL+TD+ MP++DG Sbjct: 5 KENILIVDDDLHILELLQRHLHSWNYHTYRAVSVKEAVAILKDTHIDLLITDLKMPQIDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + +E PDL + +TGF +V + + + L+KPF +L V + L Sbjct: 65 FELIKFVSEHYPDLPKLVVTGFPSVQDSLKAIKSGVVEYLTKPFTKGELQAAVAKAL 121 >gi|330002909|ref|ZP_08304459.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|328537146|gb|EGF63418.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 232 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + LL+ DI++P+++G + Sbjct: 7 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGWD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + ++ +T + L KPF +L+ V LL Sbjct: 67 IVRMLRTAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 121 >gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1141 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ILL ED++ R+ + L G EV NG A + ++ L+L DI MP MDG Sbjct: 789 GKRILLVEDNEINRQVAQEILASVGMEVFEAYNGEKALEFLKGNDVDLVLMDIQMPVMDG 848 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E RR + DL ++ +T A +A S ++KPF DL +NR L+ Sbjct: 849 HEATRRIRDQARFKDLPIIAMTAHAMLADIEKSKEVGMNDHIAKPFDPDDLFAVLNRWLS 908 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 7 LAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMPEMDG 61 L DD+ R ++K L G V + +GA A D + + F LL+ D MPEMDG Sbjct: 648 LVVDDNPTSRIILKGMLEYMGLSVTTVKSGAEAIDALHGRRGADAFRLLVVDWRMPEMDG 707 Query: 62 IELARR 67 +E A R Sbjct: 708 LETAER 713 >gi|323185298|gb|EFZ70662.1| TMAO reductase sytem sensor TorS [Escherichia coli 1357] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|301327172|ref|ZP_07220438.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1] gi|300846205|gb|EFK73965.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|300925320|ref|ZP_07141210.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1] gi|300418542|gb|EFK01853.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|300949629|ref|ZP_07163615.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1] gi|300957870|ref|ZP_07170046.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1] gi|300315441|gb|EFJ65225.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1] gi|300450960|gb|EFK14580.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1] Length = 904 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|322435954|ref|YP_004218166.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] gi|321163681|gb|ADW69386.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] Length = 133 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 8/123 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVRE---EPFSLLLTDIVMP 57 ++L+ +D MR+ + +AL ++G V+ N+G A D +RE EP L+LTDI MP Sbjct: 2 RVLIVDDSAVMRKVVERALRQSGLPITAVLQANDGQQALDLLREPTQEPLDLILTDINMP 61 Query: 58 EMDGIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + G++ R L P V+ IT + AL + A + KPF + V Sbjct: 62 GLGGLDFLEQRNQQSLAPGTPVVMITTEGSEALVHRAIAAGAKGYICKPFTAEQIRARVC 121 Query: 116 RLL 118 LL Sbjct: 122 PLL 124 >gi|302866838|ref|YP_003835475.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503253|ref|YP_004082140.1| response regulator receiver modulated diguanylate cyclase [Micromonospora sp. L5] gi|302569697|gb|ADL45899.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409872|gb|ADU07989.1| response regulator receiver modulated diguanylate cyclase [Micromonospora sp. L5] Length = 318 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD+D+ RF+ L G+EV+ +G A + + + L + D++MP +DG+EL Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGFEVLHAADGQEALEVIERQRPDLAVVDLMMPRIDGLEL 70 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA + L V+ +T + + L KPF +LV VN L Sbjct: 71 TRRLRADPMTSALPVIMLTAKGMTQDKVNGLSVGADDYLVKPFDTLELVARVNSTL 126 >gi|254161106|ref|YP_003044214.1| hybrid sensory histidine kinase TorS [Escherichia coli B str. REL606] gi|242376807|emb|CAQ31520.1| TorS monomer, subunit of TorS sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253973007|gb|ACT38678.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli B str. REL606] gi|253977221|gb|ACT42891.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BL21(DE3)] Length = 914 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|218202508|gb|EEC84935.1| hypothetical protein OsI_32150 [Oryza sativa Indica Group] Length = 623 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPE 58 M ++LLAE DD R + L K GY V + ++G A+D ++E+ F+ L+LT++ +P Sbjct: 41 MPVRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPL 100 Query: 59 MDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 M G L E D ++ V+ ++ +V++ A L KP +L N Sbjct: 101 MSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRN 156 >gi|170749079|ref|YP_001755339.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655601|gb|ACB24656.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 991 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ D+R + L + G+ V NG A + + E SL+L D++MPEMDG Sbjct: 861 ILVVEDEADVRDHVCAYLAREGFPVREAENGLRALESLEAERPSLILLDLMMPEMDGFAF 920 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK-PFHLRDLVNEVNRLL 118 R RA D+ V+ +T A + A + +VL+K L +L E+ L+ Sbjct: 921 LRALRARPDSRDVPVVVLTAKDITAEDRRRLAGQADRVLAKGSTGLNELARELRALI 977 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD R L + L + G+ V +G D R +L D+ MP+MDG + Sbjct: 741 ILVVDDDAATRDLLARFLEREGFAVTVAEDGRRGLDLARSLHPRAVLLDVTMPQMDGWAV 800 Query: 65 ARRATELDPDL 75 RA DP++ Sbjct: 801 L-RAIRADPEI 810 >gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226] gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226] Length = 224 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 54/114 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + RF+ + L G+++ +G + V+ LL+ D ++P +DG+ Sbjct: 2 RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + ++ ++ V L+KPFH +L+ + L Sbjct: 62 LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEAL 115 >gi|189423222|ref|YP_001950399.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189419481|gb|ACD93879.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 449 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 52/86 (60%), Gaps = 3/86 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMPEMD 60 +IL+ +D++ + R+L K L GY V + ++G + ++ EP LLL D+ +P+++ Sbjct: 3 RILICDDEEGILRYLSKLLKTQGYAVETFSSGTALLARLAVTSMEPVDLLLQDVRLPDIN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 GI++ ++ +L P++ V+ +T V Sbjct: 63 GIDILKQVHQLRPEMPVVVMTAHGTV 88 >gi|94992797|ref|YP_600896.1| two-component response regulator yesN [Streptococcus pyogenes MGAS2096] gi|306827000|ref|ZP_07460298.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|94546305|gb|ABF36352.1| Two-component response regulator yesN [Streptococcus pyogenes MGAS2096] gi|304430746|gb|EFM33757.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] Length = 246 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|115480333|ref|NP_001063760.1| Os09g0532400 [Oryza sativa Japonica Group] gi|68565887|sp|Q689G6|PRR95_ORYSJ RecName: Full=Two-component response regulator-like PRR95; AltName: Full=Pseudo-response regulator 95; Short=OsPRR95 gi|51571881|dbj|BAD38857.1| pseudo-response regulator 95 [Oryza sativa Japonica Group] gi|52075943|dbj|BAD46023.1| peudo-response regulator-like [Oryza sativa Japonica Group] gi|52077226|dbj|BAD46270.1| peudo-response regulator-like [Oryza sativa Japonica Group] gi|113631993|dbj|BAF25674.1| Os09g0532400 [Oryza sativa Japonica Group] gi|215695172|dbj|BAG90363.1| unnamed protein product [Oryza sativa Japonica Group] gi|215695375|dbj|BAG90566.1| unnamed protein product [Oryza sativa Japonica Group] gi|222641971|gb|EEE70103.1| hypothetical protein OsJ_30112 [Oryza sativa Japonica Group] Length = 623 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPE 58 M ++LLAE DD R + L K GY V + ++G A+D ++E+ F+ L+LT++ +P Sbjct: 41 MPVRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPL 100 Query: 59 MDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 M G L E D ++ V+ ++ +V++ A L KP +L N Sbjct: 101 MSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRN 156 >gi|89107844|ref|AP_001624.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. W3110] gi|90111200|ref|NP_415513.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. MG1655] gi|157160513|ref|YP_001457831.1| hybrid sensory histidine kinase TorS [Escherichia coli HS] gi|170080652|ref|YP_001729972.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. DH10B] gi|188493988|ref|ZP_03001258.1| sensor histidine kinase/response regulator TorS [Escherichia coli 53638] gi|238900253|ref|YP_002926049.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BW2952] gi|331641526|ref|ZP_08342661.1| TMAO reductase sytem sensor TorS [Escherichia coli H736] gi|17380324|sp|P39453|TORS_ECOLI RecName: Full=Sensor protein torS gi|85674812|dbj|BAA36135.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K12 substr. W3110] gi|87081816|gb|AAC74078.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. MG1655] gi|157066193|gb|ABV05448.1| sensor histidine kinase/response regulator TorS [Escherichia coli HS] gi|169888487|gb|ACB02194.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. DH10B] gi|188489187|gb|EDU64290.1| sensor histidine kinase/response regulator TorS [Escherichia coli 53638] gi|238861441|gb|ACR63439.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BW2952] gi|309701271|emb|CBJ00571.1| Two-component sensor kinase and response regulator [Escherichia coli ETEC H10407] gi|323938097|gb|EGB34359.1| TMAO reductase sytem sensor TorS [Escherichia coli E1520] gi|323942907|gb|EGB39072.1| TMAO reductase sytem sensor TorS [Escherichia coli E482] gi|323962878|gb|EGB58453.1| TMAO reductase sytem sensor TorS [Escherichia coli H489] gi|323973132|gb|EGB68324.1| TMAO reductase sytem sensor TorS [Escherichia coli TA007] gi|331038324|gb|EGI10544.1| TMAO reductase sytem sensor TorS [Escherichia coli H736] Length = 914 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|90424800|ref|YP_533170.1| response regulator receiver domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90106814|gb|ABD88851.1| response regulator receiver domain protein (CheY-like) [Rhodopseudomonas palustris BisB18] Length = 121 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED++ + L GY+ +NG A + VR+ L+L DI +P++ Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSNGYEALELVRKLRPDLILMDIQLPQVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ R + DP+L+ + + A A+ D + LSKP + + V R Sbjct: 61 GLEVTRWIKD-DPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRF 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|331676785|ref|ZP_08377481.1| TMAO reductase sytem sensor TorS [Escherichia coli H591] gi|331075474|gb|EGI46772.1| TMAO reductase sytem sensor TorS [Escherichia coli H591] Length = 914 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|309792183|ref|ZP_07686655.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Oscillochloris trichoides DG6] gi|308225724|gb|EFO79480.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Oscillochloris trichoides DG6] Length = 376 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 8/123 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED+ +R ++ L GYE + NG + ++ E L+L DI MPEMDG E Sbjct: 3 KILLIEDEPTIRDEVLDWLQFEGYEALGAPNGRLGLELIQREHPDLILCDIAMPEMDGHE 62 Query: 64 --LARRATELDPDLKVMFITGFA---AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RA+ + +F+T A A+ D A L+KPF +L+N V L Sbjct: 63 VLLEVRASMRFSTIPFVFLTASADREAIRKGMDMGAD---DYLTKPFSHTELLNTVRSRL 119 Query: 119 TIK 121 K Sbjct: 120 RKK 122 >gi|302871224|ref|YP_003839860.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor obsidiansis OB47] gi|302574083|gb|ADL41874.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor obsidiansis OB47] Length = 520 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%) Query: 4 KILLAEDDDDMRRFL-----IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+L+ ED+ R L LG E+ S NG A + V+ +LL D+ MP Sbjct: 3 KLLIVEDEKITRESLETLIPWNELGIG--EIKSAKNGQEALETVKNYIPDILLCDVRMPR 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE ++R + P K++FI+G+A Sbjct: 61 MDGIEFSKRLKNIFPKCKIVFISGYA 86 >gi|300823946|ref|ZP_07104069.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7] gi|300523578|gb|EFK44647.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7] Length = 904 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1095 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ R + + L G+ V + NNG A + +PF + DI MP M+G++ Sbjct: 972 RLLVVEDNRVNRLMVARMLTMMGHAVETANNGEEALKTLETQPFDAVFMDIQMPGMNGVQ 1031 Query: 64 LARRATE------LDPDLKVMFITGFA 84 RR E +DP + V+ IT A Sbjct: 1032 ATRRIREADQGSGIDPAIPVIAITAHA 1058 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED + R + L +G+ V NG + D FS +L D+ +P+MDG+ + Sbjct: 6 ILIIEDSPEFARLVAHHLEASGFSVHLAENGRAGLDAFGGRRFSAVLLDLQLPDMDGLAV 65 Query: 65 ARRATELDPDLKVMFITG 82 + + ++ ++G Sbjct: 66 LADMADRSDSIPLIVVSG 83 >gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Pediococcus acidilactici 7_4] gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Pediococcus acidilactici 7_4] Length = 229 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +DD ++ L + GYE VS NG A K+ +P L++ DI+MPEMDG+ Sbjct: 2 KILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDGM 61 Query: 63 ELARRATELDPDLKVMFITG 82 ++ R + D +L ++ ++ Sbjct: 62 QVVREVRK-DSELPILMLSA 80 >gi|257440725|ref|ZP_05616480.1| phosphate regulon transcriptional regulatory protein Phob [Faecalibacterium prausnitzii A2-165] gi|257196820|gb|EEU95104.1| phosphate regulon transcriptional regulatory protein Phob [Faecalibacterium prausnitzii A2-165] Length = 230 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + L L GY V S N +A D +R+ F L+L DI +P+ +G Sbjct: 2 KQILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINLPDGNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL + D V+F+T A + +S+ + +V ++KPF + L ++ + Sbjct: 62 ELCKLIKPQHSDTIVIFLT-----ANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAM 116 Query: 118 LTI 120 + Sbjct: 117 FAM 119 >gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 581 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ R F ++AL K G+ V + +G A + + L+L DI MP ++G+E Sbjct: 460 RILLAEDEPVNRIFTVRALQKLGHAVDAAADGREALAMLERGAYDLVLMDIQMPRLNGLE 519 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 R R+ +++ M + A A+ D A + ++KPF +L + R L Sbjct: 520 ATRRIRSGQVEGVPPTMPVVALTAYAMEGDRQKGLEAGMDEYVTKPFEPAELTAAMERAL 579 >gi|229523024|ref|ZP_04412436.1| sensor histidine kinase CqsS [Vibrio cholerae TM 11079-80] gi|229339874|gb|EEO04884.1| sensor histidine kinase CqsS [Vibrio cholerae TM 11079-80] Length = 662 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 544 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 603 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 604 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 631 >gi|300778576|ref|ZP_07088434.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300504086|gb|EFK35226.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 120 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58 M++KIL+ DDD F +K KA GY V +C A+D ++ +P FS++L D++MP Sbjct: 1 MSKKILIV-DDDPRNIFALKLTLKARGYAVETCTMAQEAFDILKSDPQFSVVLMDMMMPG 59 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 +DG E A R P++K + + A A+ D A +SKP + L+ + Sbjct: 60 IDGYE-AVRIIRDTPEIKNIPVIAVTAQAMPEDRQKCMEAGADDYVSKPIDVDLLIKAIE 118 Query: 116 RL 117 +L Sbjct: 119 KL 120 >gi|226939490|ref|YP_002794563.1| response regulator receiver [Laribacter hongkongensis HLHK9] gi|226714416|gb|ACO73554.1| response regulator receiver [Laribacter hongkongensis HLHK9] Length = 121 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL +D +R+ + L AGY+++S +G + + L+LTD MP MD Sbjct: 1 MAKCILAVDDSPSIRQMVTFTLKNAGYDIISAPDGLAGLKEANSHRVDLVLTDQNMPGMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ L R +L P + ++ +T A + A + + KPF + LV+ V +L Sbjct: 61 GLTLIRELRQL-PAYRATPILMLTTEAGDDMKAQGRAAGASGWMVKPFDPQKLVDVVRKL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|242279188|ref|YP_002991317.1| signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242122082|gb|ACS79778.1| signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 372 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 45/82 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +DD+ +R + L +GYEV+ +NG E+ ++L D+ MPEMDG+ Sbjct: 6 KILTIDDDESVRLSIAHYLEDSGYEVLQASNGHEGLKIFHEQKPDVVLLDLRMPEMDGLS 65 Query: 64 LARRATELDPDLKVMFITGFAA 85 + ++ + P V+ ++G + Sbjct: 66 VLKQLGQEAPQTPVIVVSGTGS 87 >gi|223935711|ref|ZP_03627627.1| two component, sigma54 specific, transcriptional regulator, Fis family [bacterium Ellin514] gi|223895719|gb|EEF62164.1| two component, sigma54 specific, transcriptional regulator, Fis family [bacterium Ellin514] Length = 472 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+ +DD + + L + GY + + +G A + P L L D +P++ Sbjct: 1 MNPNLLIVDDDPLILELITGELEQFGYNMFTAGSGREAMSIFQTTPIHLALLDYSLPDVC 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L RR PD+ VMF+TG + L+KPF L+ L V + Sbjct: 61 GENLFRRLRAQKPDILVMFLTGNPNLETAVSLMKSGVNDYLTKPFSLKQLSAHVRAIF 118 >gi|182413452|ref|YP_001818518.1| response regulator receiver protein [Opitutus terrae PB90-1] gi|177840666|gb|ACB74918.1| response regulator receiver protein [Opitutus terrae PB90-1] Length = 188 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%) Query: 17 FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 L +AL + G+EVV +G A + +R++P ++++D VMP +DG++L R+ D Sbjct: 1 MLRRALLRLGHEVVEAVDGEEALEVLRQQPVRVVVSDWVMPRVDGLDLCRQVRGRMGDEY 60 Query: 77 VMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 V FI ++ A + +A V L+KP L +L Sbjct: 61 VYFILLTSSDATEENQRTAADAGVDDFLTKPLDLSEL 97 >gi|251799424|ref|YP_003014155.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547050|gb|ACT04069.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 225 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLA+DD ++R + + + GY+V +GA A + ++ P +L + D++MP +DG EL Sbjct: 4 LLLADDDPNIRALVRFVMTREGYQVYEAQDGAEAVEVMQRAPINLAIIDVMMPRIDGFEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E D+ ++ +T ++ ++KPF +L+ V L N Sbjct: 64 CEYIRE-RYDIPIIMLTAKDQLSDKEQGYLRGTDDYVTKPFEPEELLFRVKALFRRYN 120 >gi|158422791|ref|YP_001524083.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329680|dbj|BAF87165.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 188 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 +L+ +D+ + +++AL G +S +NG A +R P L++TDI MP+MD Sbjct: 68 TSPLLIVDDEPEYLDEILEALAFEGVSAISASNGIDAVQTLRRCPDIRLVVTDIRMPDMD 127 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 GI L A R D DL+ + +TG AA A + A L+KP + Sbjct: 128 GIALMEAARQEFSDRDLQFIVVTGHAAKADIERAKAAGVIDCLTKPLSM 176 >gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 232 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 41/66 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ EDD + + ++L K G+EV + NG A D + + F ++L D+++P++D Sbjct: 1 MGYKILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLPKID 60 Query: 61 GIELAR 66 G+E R Sbjct: 61 GMECLR 66 >gi|153830282|ref|ZP_01982949.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae 623-39] gi|148874228|gb|EDL72363.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae 623-39] Length = 686 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 568 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 628 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 655 >gi|147672372|ref|YP_001215296.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae O395] gi|146314755|gb|ABQ19295.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae O395] gi|227015426|gb|ACP11635.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae O395] Length = 686 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 568 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 628 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 655 >gi|126649858|ref|ZP_01722094.1| modulation of CheA activity in response to attractants (chemotaxis protein) [Bacillus sp. B14905] gi|126593577|gb|EAZ87522.1| modulation of CheA activity in response to attractants (chemotaxis protein) [Bacillus sp. B14905] Length = 300 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVR---------EEPFSLLL 51 ++IL+AED +R+ L + +AGY+ V NG AY+ + E L++ Sbjct: 172 GKRILIAEDSPLLRKLLFDTMNEAGYDNVEFFENGRDAYEYLEGIAKSGSDIAEHIQLVV 231 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 TDI MP+MDG L R+ E PDL+ + + F+++ Sbjct: 232 TDIEMPQMDGHHLTRKIKE-HPDLQKLPVIIFSSL 265 >gi|150021392|ref|YP_001306746.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793913|gb|ABR31361.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 218 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 52/107 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ +RR L EV +C G A E +++ DI++P++DG E Sbjct: 2 KILIVEDDEKLRRLLELEYNHENCEVKTCEFGEDALLIYEEFKPDVVILDIMLPDIDGTE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +A++ +LDP ++ +T + + + KPF +L Sbjct: 62 VAKKLRKLDPSAGIIMLTALSQKKDKLEGFESGADDYIVKPFDFEEL 108 >gi|88603926|ref|YP_504104.1| response regulator receiver domain-containing protein [Methanospirillum hungatei JF-1] gi|88189388|gb|ABD42385.1| response regulator receiver domain protein (CheY-like) [Methanospirillum hungatei JF-1] Length = 124 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ ED+ + L GY V+ NG K +EE ++L DI +PEMD Sbjct: 1 MTHKVLVIEDNAQNMYLIHFLLESQGYTVIEAENGLIGIQKAKEERPDIILLDIQLPEMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G E+AR R+T + ++ +T +A A + KP + V+++ Sbjct: 61 GYEIARILRSTPGIDTIPIIAVTSYAMAGDKERILAAGATDYIEKPINPATFVDQI 116 >gi|325262401|ref|ZP_08129138.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324032233|gb|EGB93511.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 6/112 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++ + L YEV++ GA A+D++R EP ++L DI MP +D Sbjct: 1 MQYKILIVDDDTELLKMLRSYFEIKKYEVITACCGAEAFDRIRPEP-DIILLDINMPGID 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+++ R R + P ++F+T + + KPF L++L Sbjct: 60 GLDVCRQIRDKVMCP---IIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKEL 108 >gi|293414270|ref|ZP_06656919.1| TMAO reductase system sensor TorS [Escherichia coli B185] gi|291434328|gb|EFF07301.1| TMAO reductase system sensor TorS [Escherichia coli B185] Length = 914 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 267 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 54/106 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + L AL G+EV + +G A R+ ++ DI++P+MDG+E Sbjct: 43 RILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIMLPDMDGLE 102 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 + R+ PD+ V+F+T AV ++KPF L + Sbjct: 103 VLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEE 148 >gi|264678514|ref|YP_003278421.1| Sigma-54 dependent transcriptional regulator [Comamonas testosteroni CNB-2] gi|262209027|gb|ACY33125.1| Sigma-54 dependent transcriptional regulator [Comamonas testosteroni CNB-2] Length = 440 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD D+ + + G + + ++ A + + ++++DI +P+M G+ Sbjct: 6 KVLIVEDDADVAMACEQTIRLEGLDCICVSSAEQAQKHLSPDFAGIVVSDIRLPQMSGLG 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L A LD +L V+ ITG +++ + A L KPF LV V R L Sbjct: 66 LLAAARVLDAELPVILITGHGDISMAVQAMKDGAADFLEKPFAPERLVEAVRRAL 120 >gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 228 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++++ +F+ L GYE +G + + F L+L D+++PE++GIE Sbjct: 3 RILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELNGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR EL + ++ +T +V + KPF + +L+ V LL Sbjct: 63 VARRVREL-KNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALL 116 >gi|254452809|ref|ZP_05066246.1| two component, sigma54 specific, transcriptional regulator, Fis family [Octadecabacter antarcticus 238] gi|198267215|gb|EDY91485.1| two component, sigma54 specific, transcriptional regulator, Fis family [Octadecabacter antarcticus 238] Length = 452 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +A +AG +V + ++ + V E L+++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQAFTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVIMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E + P L V+ I+ + + L KPF L DL+ R L + Sbjct: 61 GLEQLPKIALARPGLPVIVISAQNNIMTAIQAAEADAYDYLPKPFDLPDLMKRAARALEV 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|182412631|ref|YP_001817697.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177839845|gb|ACB74097.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 367 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D L++ LG AGY ++ +G A + + L+L D++MP +D Sbjct: 1 MSETILIVDDTPANLCVLVETLGAAGYRLMVAEDGEEALAQTAQTVPDLILLDVMMPGID 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E R RA D V+F+T + A ++KP + + V L Sbjct: 61 GFETCRRLRAQPTTADTPVLFMTALNETPDKVKAFAAGGVDYITKPIEHEEALARVRTHL 120 Query: 119 TIK 121 T++ Sbjct: 121 TLR 123 >gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4] gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4] Length = 559 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 36/63 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED F+ K L K GYEV + +G ++ E F L+L DI MP MDGIE Sbjct: 424 RILVAEDHPMNLMFIEKLLAKQGYEVHTVTDGTEVLPALQRERFDLVLMDIAMPVMDGIE 483 Query: 64 LAR 66 R Sbjct: 484 ATR 486 >gi|92118948|ref|YP_578677.1| PAS/PAC sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gi|91801842|gb|ABE64217.1| PAS/PAC sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 508 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIE 63 +LL ED+ D+ L + GY V NN +A ++ L+ +DIVMP +MDG+ Sbjct: 397 VLLVEDNPDVANASAGLLEQLGYRVRISNNAEAALLEIERNSVDLVFSDIVMPGKMDGLG 456 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 LA+ P L V+ +G++ + + +L KP+ + +L + +L Sbjct: 457 LAKALRATHPHLPVLLASGYSEAL----AGGQTDFHILRKPYAIHELSQALAKL 506 >gi|116049196|ref|YP_792002.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|296390378|ref|ZP_06879853.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] gi|115584417|gb|ABJ10432.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 858 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +LL +DD +R LG GY+V + A +V R LL+TD +M + G++ Sbjct: 744 VLLVDDDRMVRYTTALLLGDLGYQVSEAASAEEALGEVERGLAPDLLVTDHLMADKTGVQ 803 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA + P L V+ ITG+A L P+ +VL+KPF +L + RLL Sbjct: 804 LAEELRQRFPQLPVLVITGYA--NLTPEQ--LNGFEVLTKPFRHNELAERLARLL 854 >gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] Length = 2370 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD DMR FL L + G V + +A + + L+++DI MPEMDG Sbjct: 2249 EILVVDDDADMREFLPFMLEEYGASVTVVASAIAALTALSQSQPDLIISDIGMPEMDGYM 2308 Query: 64 LARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ L P+ + + +T +A + A + +SKP +LV + L+ Sbjct: 2309 LMRQIRSLKPEQGGTIPAIALTAYAGEMDYQQAIAVGFQQHISKPVDPEELVKAIGLLI 2367 >gi|327394622|dbj|BAK12044.1| transcriptional regulatory protein TctD [Pantoea ananatis AJ13355] Length = 223 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ R+L KAL + G+ V +G +A ++ E ++L++ D+ +P +DGIE Sbjct: 2 RLLLVEDTAELARWLQKALTQKGFAVDWVADGLAADHSLQSEDYALVVLDVSLPRLDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + LN ++ L+KPF L +L + LL Sbjct: 62 VLTRLRRRGQTVPVLMLTARTTLDDRVRGLNTGAD-----DYLTKPFELDELDARLRALL 116 >gi|262169056|ref|ZP_06036749.1| sensor histidine kinase CqsS [Vibrio cholerae RC27] gi|262022337|gb|EEY41045.1| sensor histidine kinase CqsS [Vibrio cholerae RC27] Length = 660 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 542 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 601 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 602 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 629 >gi|261253150|ref|ZP_05945723.1| putative response regulator [Vibrio orientalis CIP 102891] gi|260936541|gb|EEX92530.1| putative response regulator [Vibrio orientalis CIP 102891] Length = 234 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KILL EDD D+ + L GY+V + +G+SA DK++E L+L D+++P Sbjct: 1 MNSKILLIEDDRDISQLTQMYLTAEGYQVEAIYDGSSAIDKIKEFQPDLVLLDLMLPGKS 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G E+ A + + +M +T Sbjct: 61 GAEICSEARQFYTGM-IMVLTA 81 >gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] Length = 235 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + + L K Y V SC +G A D + + +L+ DI++P++DG E Sbjct: 9 RILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIMLPKLDGFE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R V+F+T +V L KPF +L+ + +L Sbjct: 69 VLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVIL 123 >gi|228477889|ref|ZP_04062503.1| Two-component response transcriptional regulator [Streptococcus salivarius SK126] gi|228250379|gb|EEK09619.1| Two-component response transcriptional regulator [Streptococcus salivarius SK126] Length = 225 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAED++ + R AL GYEV NG A D + + +++ DI+MP Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNAYQVMIMDIMMPIKT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIE + V+ +T + + D+ A L+KP L++L+ + L Sbjct: 61 GIEALKEIRSSGDRTHVIMLTAMSEIDDRVTGLDAGAD---DYLTKPISLKELLARLRSL 117 >gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 948 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|160938347|ref|ZP_02085702.1| hypothetical protein CLOBOL_03245 [Clostridium bolteae ATCC BAA-613] gi|158438720|gb|EDP16477.1| hypothetical protein CLOBOL_03245 [Clostridium bolteae ATCC BAA-613] Length = 286 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++LLA+D+ R L K L + ++ NGA A + + E +++ DI MPEM+ Sbjct: 6 RVLLADDEQIERMALAKRLKRHFCGSLDISEAVNGAEALETFKREKSQIVVMDISMPEMN 65 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+E A R LD D ++F+T + Sbjct: 66 GVEAAERIRSLDEDCIIIFLTAY 88 >gi|149914192|ref|ZP_01902723.1| response regulator receiver [Roseobacter sp. AzwK-3b] gi|149811711|gb|EDM71544.1| response regulator receiver [Roseobacter sp. AzwK-3b] Length = 365 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMD 60 KIL +DDD + ++L + +E+V+ +GA A + +R E F LL DI MPE+D Sbjct: 7 KILTVDDDDSFVELIERSLSASDNHEIVTALSGAEAINILRKDETAFDCLLFDIQMPELD 66 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GI L R DP V+ +T + ++ A + L+KPF +DL Sbjct: 67 GISLCRH-VRTDPRYATTPVIMLTAMSQRHYLDNAFAAGASDYLNKPFDFQDL 118 >gi|152987544|ref|YP_001345655.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150962702|gb|ABR84727.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 121 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ L L AGYEV +G K + +SL+ TD MP MD Sbjct: 1 MGKPILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSRNYSLVFTDQNMPNMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G+ L R L + ++ +T ++ A+ + L KPF L+ EV R Sbjct: 61 GLSLIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLL-EVTR 117 >gi|39996367|ref|NP_952318.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983247|gb|AAR34641.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298505377|gb|ADI84100.1| sensor histidine kinase response regulator [Geobacter sulfurreducens KN400] Length = 445 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED +D+R + L A ++V S NG A D E F L+L DI MP MDG Sbjct: 324 RVLVAEDAEDIRLLIAAFLRGASHQVCSAGNGQEALDMFMAEDFDLVLMDIQMPVMDGYT 383 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 R E + + A A S++ K + LSKP L+ V L Sbjct: 384 ATRALREWERQRGRTPVPVVALTACAEKSDSLKTIEAGCTSHLSKPIRKDTLLRTVAEL 442 >gi|51891982|ref|YP_074673.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855671|dbj|BAD39829.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 135 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 4/114 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD D+ R + L GYEV +G A + RE L+L D +MP MDG+E Sbjct: 19 ILVADDDPDIARLVAFHLKYNGYEVTLARDGTEALARARETAPDLILLDWMMPGMDGLEC 78 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 A + DP + V+ +T A A A A L KPF L L+ V Sbjct: 79 L-TALKGDPATRGIPVVLMTARAQQADVQAGIAAGAAAYLVKPFELDHLIRTVK 131 >gi|95929933|ref|ZP_01312673.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95133902|gb|EAT15561.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 512 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 49/101 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ D+ F + L GYEV + N A + + F + L D+ +P+ DG+ L Sbjct: 6 ILIIDDETDVCNFFRRLLKYKGYEVTTATNEPQAIQALEDNNFQVALVDLKLPDTDGLTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 P+ +V+ +TG++ + + + + KPF Sbjct: 66 LSLIKSRQPECEVIIMTGYSTIKTAVSAMQQGAYEYVEKPF 106 >gi|194438003|ref|ZP_03070096.1| TMAO reductase system sensor TorS [Escherichia coli 101-1] gi|256023304|ref|ZP_05437169.1| hybrid sensory histidine kinase TorS [Escherichia sp. 4_1_40B] gi|301022622|ref|ZP_07186493.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1] gi|301646370|ref|ZP_07246255.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1] gi|307137626|ref|ZP_07496982.1| hybrid sensory histidine kinase TorS [Escherichia coli H736] gi|312971125|ref|ZP_07785304.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70] gi|194422939|gb|EDX38933.1| TMAO reductase system sensor TorS [Escherichia coli 101-1] gi|299881194|gb|EFI89405.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1] gi|301075406|gb|EFK90212.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1] gi|310336886|gb|EFQ02053.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70] gi|315135644|dbj|BAJ42803.1| hybrid sensory histidine kinase TorS [Escherichia coli DH1] gi|315619081|gb|EFU99662.1| TMAO reductase sytem sensor TorS [Escherichia coli 3431] gi|332342435|gb|AEE55769.1| TMAO reductase sytem sensor protein TorS [Escherichia coli UMNK88] Length = 904 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|330972309|gb|EGH72375.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 794 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV+ ++G A +++ + F L+L D MP MDG E Sbjct: 672 RVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGYE 731 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R R++ P+L ++ +T A A L+KPF +LV+ +++ + I Sbjct: 732 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWIPI 790 >gi|288818807|ref|YP_003433155.1| two component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788207|dbj|BAI69954.1| two component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752393|gb|ADO45876.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 218 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + L + L K GY V +G Y+ E F L++ D+++P M G E Sbjct: 2 RLLLIEDDASLAKALKEVLEKEGYHVSLALDGRRGYELALCEEFDLIVLDLLLPSMGGEE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + E V+ +T + + D A L+KPFHL +L+ V ++ Sbjct: 62 VLKSLRESGVKTPVLTLTVVSDLFKKVDLFALGADDYLTKPFHLEELLARVRAII 116 >gi|262163484|ref|ZP_06031230.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|262028051|gb|EEY46710.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 54/114 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + RF+ + L G+++ +G + V+ LL+ D ++P +DG+ Sbjct: 2 RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + ++ ++ V L+KPFH +L+ + L Sbjct: 62 LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEAL 115 >gi|255689925|ref|ZP_05413600.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260624531|gb|EEX47402.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1341 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED+ DM F+++ L K Y V++ NGA A + +L+++D+VMP MDG EL Sbjct: 1094 VLVAEDNPDMLAFVVRQLSK-DYTVLTATNGAEALRVLDGNYVNLMISDVVMPVMDGFEL 1152 Query: 65 AR 66 + Sbjct: 1153 CK 1154 >gi|189466428|ref|ZP_03015213.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM 17393] gi|189434692|gb|EDV03677.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM 17393] Length = 1396 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ EDD+++R ++ + LG Y + C NG A + L+++D++MPEMDG+ Sbjct: 1135 RHVLVVEDDEEIRHYICRELGNDFY-MTECCNGKEALASILYHTPDLIISDVMMPEMDGL 1193 Query: 63 ELARR 67 L R+ Sbjct: 1194 TLCRK 1198 >gi|167579955|ref|ZP_02372829.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 257 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G++ Sbjct: 12 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMSGLD 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 72 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 125 >gi|220918717|ref|YP_002494021.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956571|gb|ACL66955.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] Length = 322 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 41/63 (65%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D +L++ L + GY+V + +G A KVR EP L+L D+++P+MDG+E Sbjct: 6 QILVVDDSRTQLDWLVRVLEREGYDVRTAADGKDAIRKVRGEPPDLVLLDMILPDMDGLE 65 Query: 64 LAR 66 + R Sbjct: 66 VLR 68 >gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis] gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein Length = 243 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GYEV++ +NG A R+E SL++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVA 87 + + + + D+ ++ +T V Sbjct: 65 YGVCQELRK-ESDVPIIMLTALGEVC 89 >gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+MDG Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVMLPKMDGFA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + + ++F+T A++ LSKPF ++L + +L Sbjct: 65 VCRR-IRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATIL 118 >gi|33600088|ref|NP_887648.1| two component response regulator [Bordetella bronchiseptica RB50] gi|33567686|emb|CAE31600.1| two component response regulator [Bordetella bronchiseptica RB50] Length = 207 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 54/111 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L L G ++ + + E+ L+ D+ MP G++ Sbjct: 12 VYIVDDDSSVRAALADLLASVGLRALTFGSTGEFLAQAMEDAPGCLVLDVRMPGQSGMDF 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 RR L+ +L V+FITG +A+ + + L+KPF +DL++ ++ Sbjct: 72 HRRMAGLEINLPVIFITGHGDIAMGVQAMKNGAIEFLAKPFREQDLLDAIH 122 >gi|28895572|ref|NP_801922.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|28810821|dbj|BAC63755.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] Length = 243 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF----- 83 V NG A+D ++EP+ ++LTDI MP+++GI+LA + P ++F+TG+ Sbjct: 28 VNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKQESPQTHLVFLTGYDDFNY 87 Query: 84 --AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +A+ L D L KPF D+ + + +L Sbjct: 88 ALSALKLGADD-------YLLKPFSKADVEDMLGKL 116 >gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD ++ + L K GY+VV +G A + ++ + L++ DI+MP+MDG E+ Sbjct: 6 ILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN---- 115 R+ ++ ++F++ A D + K + ++KPF +LV VN Sbjct: 66 TRQ-IRTKQNMPIIFLS-----AKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 116 RLLTI 120 R LT+ Sbjct: 120 RFLTL 124 >gi|332766184|gb|EGJ96394.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Shigella flexneri 2930-71] Length = 467 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 231 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 290 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 291 TRKLREQNSSLPIWGLTANA 310 >gi|325103344|ref|YP_004272998.1| response regulator receiver protein [Pedobacter saltans DSM 12145] gi|324972192|gb|ADY51176.1| response regulator receiver protein [Pedobacter saltans DSM 12145] Length = 120 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD+ + + L K G+EV+ NG A +K++ L++TDI+MP G E+ Sbjct: 3 ILIAEDDELILHTIEHKLVKEGHEVILSRNGREAIEKIKSLDIDLVITDIMMPFASGTEI 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +L ++ V+ ++ + D+ + + KPF +L+ + +L Sbjct: 63 LSTIQDLGKNIPVIVLSSMGQEEVVIDAFDMGASDFMIKPFSPNELLLRIKKL 115 >gi|313672616|ref|YP_004050727.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939372|gb|ADR18564.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] Length = 120 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D R F+ K L G+EVV+ +G A +K+R + F +L D+VMP +G + Sbjct: 3 KILVADDSITEREFIRKILVGEGHEVVTVEDGDKAIEKLRADKFDCILLDVVMPGKNGFQ 62 Query: 64 LAR--RATELDPDLKVMFIT 81 + R + + ++ V+ IT Sbjct: 63 ICRDIKKDDFTKNIPVILIT 82 >gi|310822706|ref|YP_003955064.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|309395778|gb|ADO73237.1| Response regulator [Stigmatella aurantiaca DW4/3-1] Length = 369 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + L + GYEVV+ ++ A REE F ++LTD +MP ++GIE Sbjct: 3 RILVVDDDVRILAALSRIFVAEGYEVVTHSDPVQA---AREEGFQVVLTDFMMPYLNGIE 59 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNR 116 L E +P + +T A ++ N + ++L KP+ L DL + V + Sbjct: 60 LLGALREKNPRAVRLMLTAAADFRTASEAVNRGEVYRLLGKPWTLSDLTSSVRQ 113 >gi|307068694|ref|YP_003877660.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|306410231|gb|ADM85658.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] Length = 84 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 39/67 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARR 67 G+E+ +R Sbjct: 61 GMEVCKR 67 >gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 232 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 10/114 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+LL EDD + R + L + GY V G + +PF L+L D ++PEMD Sbjct: 1 MKEKLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK----VLSKPFHLRDL 110 G+ + + + D+ ++ ++ A D++ + + ++KPF L +L Sbjct: 61 GLTVCQN-IRWESDVPILMMS-----ARKEDADKVEGLQGADDYIAKPFSLEEL 108 >gi|288935841|ref|YP_003439900.1| response regulator receiver modulated serine phosphatase [Klebsiella variicola At-22] gi|290509868|ref|ZP_06549239.1| response regulator [Klebsiella sp. 1_1_55] gi|288890550|gb|ADC58868.1| response regulator receiver modulated serine phosphatase [Klebsiella variicola At-22] gi|289779262|gb|EFD87259.1| response regulator [Klebsiella sp. 1_1_55] Length = 404 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+ ED RR L + L + GY V NG +A + +P SL+++D MPEM+G+ Sbjct: 4 QHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVAALAILENQPVSLVISDWEMPEMNGL 63 Query: 63 ELAR 66 L R Sbjct: 64 TLCR 67 >gi|255100873|ref|ZP_05329850.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306761|ref|ZP_05350932.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 440 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KILL +D+ + + K L K GY V +G A + ++++ + L+L+D++M MDG+ Sbjct: 2 KILLVDDELEYGVVMKKILQKKGYLVDIALSGEEAINIIKKDKNYDLVLSDVMMKNMDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 +L R ++ D++V+ +TG+ ++ Sbjct: 62 QLLDRIKSINRDIEVILVTGYGSI 85 >gi|160899727|ref|YP_001565309.1| Fis family two component sigma-54-specific transcriptional regulator [Delftia acidovorans SPH-1] gi|160365311|gb|ABX36924.1| two component, sigma54 specific, transcriptional regulator, Fis family [Delftia acidovorans SPH-1] Length = 448 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD D+ +AL G S + A ++ + ++++DI +P MDG+ Sbjct: 6 KVLIIEDDPDIVLGCEQALQLEGIACESVGSAEQARRRLSRDFAGIVVSDIRLPRMDGMA 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R +D +L V+ ITG +++ + + KPF LV V R L Sbjct: 66 FLRELVAMDAELPVVLITGHGDISMAVQAMKDGAQDFIQKPFAPETLVGAVRRAL 120 >gi|86158253|ref|YP_465038.1| response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774764|gb|ABC81601.1| response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase [Anaeromyxobacter dehalogenans 2CP-C] Length = 357 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L + GY + + +A D+ R+ + L+++D+ MP DG Sbjct: 10 RILIVDDDAAVRDVITVLLREEGYVCTTVASAEAALDEARKTDYPLVISDVRMPARDGFW 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD V+ +T + + A L KP + +L+ + R L Sbjct: 70 LLEQMREASPDTAVIMLTAYGDTEAAVECLRNGAADYLLKPPKVTELIRAIERAL 124 >gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi] Length = 242 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +L G+EV + NGA DK R L+ D++MP MDG Sbjct: 18 RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFG 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR D V+F+T AV ++KPF L ++V + +L Sbjct: 78 MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVIL 132 >gi|77465308|ref|YP_354811.1| chemotaxis response regulator, CheY4 [Rhodobacter sphaeroides 2.4.1] gi|77389726|gb|ABA80910.1| Chemotaxis response regulator, CheY4 [Rhodobacter sphaeroides 2.4.1] Length = 121 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L +D +R + L +AGYEV+ ++G A D P +LTD MP +D Sbjct: 1 MTKTVLAVDDSPSIRCMVALTLREAGYEVIEASDGQEALDLALSRPVDAILTDQNMPRLD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ R R+ ++F++ +A L ++ A + KPF L+ + +LL Sbjct: 61 GLGFIRAFRSRPEGKGTPIVFLSTESADTLKAEARAAGALGWMVKPFTQAQLLAVMKKLL 120 >gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes FSL R2-561] gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes J0161] gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] Length = 236 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + ++ ++ +T + L D ++KPF R++V + Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADD-------YMTKPFSPREVVARIKA 115 Query: 117 LL 118 +L Sbjct: 116 IL 117 >gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes] gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] Length = 240 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + ++ ++ +T + L D ++KPF R++V + Sbjct: 67 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADD-------YMTKPFSPREVVARIKA 119 Query: 117 LL 118 +L Sbjct: 120 IL 121 >gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 229 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P Sbjct: 2 VGKNILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTS 61 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 GIELARR EL D+ ++ +T A + N + +V ++KPF R+LV Sbjct: 62 GIELARRLKRDELTSDIPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVAR 116 Query: 114 VNRLL 118 + +L Sbjct: 117 LKAVL 121 >gi|313108696|ref|ZP_07794692.1| putative sensor histidine kinase/response regulator [Pseudomonas aeruginosa 39016] gi|310881194|gb|EFQ39788.1| putative sensor histidine kinase/response regulator [Pseudomonas aeruginosa 39016] Length = 571 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ R L + + G+ V++ NG A E L+L D++MP MDG E Sbjct: 13 ILIAEDNAADRLLLSTIVSRQGHRVLTAGNGLEAVALFETERPQLVLMDVMMPVMDGFEA 72 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 ARR EL P ++F+T + S LSKP++ L +N + R Sbjct: 73 ARRIKQQAGEELVP---IIFLTSLSETEALVQSLEAGGDDFLSKPYNRVILEAKINAMGR 129 Query: 117 L 117 L Sbjct: 130 L 130 >gi|302391737|ref|YP_003827557.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] gi|302203814|gb|ADL12492.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] Length = 120 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR L K + + GY+VV +G A +K +E L+ DI MPEM Sbjct: 1 MAKEILIVDDAQFMRTMLSKLVEEDGYKVVGEAVDGKDAIEKYKELEPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 DGIE + DPD ++ + Sbjct: 61 DGIEAMEHIKDFDPDADIIVCSAMG 85 >gi|296388146|ref|ZP_06877621.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 571 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ R L + + G+ V++ NG A E L+L D++MP MDG E Sbjct: 13 ILIAEDNAADRLLLSTIVSRQGHRVLTAGNGLEAVALFETERPQLVLMDVMMPVMDGFEA 72 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 ARR EL P ++F+T + S LSKP++ L +N + R Sbjct: 73 ARRIKQQAGEELVP---IIFLTSLSETEALVQSLEAGGDDFLSKPYNRVILEAKINAMGR 129 Query: 117 L 117 L Sbjct: 130 L 130 >gi|296100706|ref|YP_003610852.1| two component transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055165|gb|ADF59903.1| two component transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 1/86 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 M IL+ +DD + L L + + V+ C+NG A ++V +EP +L+L D+++P++ Sbjct: 1 MKPAILVVDDDTAVCELLQDVLSEHVFTVLVCHNGQDALNRVHQEPGIALVLLDMMLPDI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAA 85 +G+++ + + PDL V+ +TG + Sbjct: 61 NGLQVLLQLQKQRPDLPVVMLTGLGS 86 >gi|218963798|gb|ACL13561.1| CopR [Pseudomonas fluorescens] Length = 231 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ + +L + L +AG+ V NG A E + LL+ D++MP +DG E Sbjct: 2 RLLVAEDEPKIGIYLQQGLTEAGFNVDRFTNGKDALQHALSEAYDLLILDVMMPGLDGWE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ ++ V+F+T V L KPF +L+ V LL Sbjct: 62 VLQKVRASGKNVPVLFLTARDRVEDRVKGLELGADDYLIKPFAFSELLARVRTLL 116 >gi|254517714|ref|ZP_05129770.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911463|gb|EEH96664.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 241 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 15/128 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+AED+ + + + L K GYEV N+G A D + + L++ DI+MP DG Sbjct: 21 SKILVAEDEKQISKVMKLYLEKEGYEVTLANDGKVAEDLIENNTYDLVILDIMMPNKDGW 80 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L ++ L+ +V+ + L D + KP +R+LV V Sbjct: 81 YLLKKVKSLNNKTQVIITSARGEEEDRIFGFELGADD-------YMVKPISMRELVLRVG 133 Query: 116 -RLLTIKN 122 R+ ++KN Sbjct: 134 LRINSVKN 141 >gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 948 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|223038963|ref|ZP_03609255.1| two-component response regulator [Campylobacter rectus RM3267] gi|222879936|gb|EEF15025.1| two-component response regulator [Campylobacter rectus RM3267] Length = 232 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 56/112 (50%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L EDD+++R+ K L ++V+ C + +K + ++ TDI MP ++G+E+ Sbjct: 16 LYVEDDNEVRQQTAKILKLFFHQVIDCGDAQEGIEKFKASKAGIVFTDINMPGINGLEMI 75 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R ++DP +K + + + + + + KPF DL++ + ++ Sbjct: 76 ERIKQIDPLVKTVIFSAYDESKFFTKAISIGVDGYILKPFTTEDLLSVLEKI 127 >gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 789 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D + R ++ LG G+++ +G+ A +K +L+L D+VMP MDG Sbjct: 570 RKAILVVDDVAENRAVMVDMLGPLGFDMEEAADGSEALEKTASLHPALVLMDVVMPGMDG 629 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS----NAPKNAKVLSKPFHLRDLVNEVNRL 117 +E RR ++ P+ + + I +A A D+ A NA L+KP L++ V L Sbjct: 630 LEATRRLRQM-PEFRDLPIVAVSASASGTDAAQSLAAGANA-FLAKPIDFGRLLSHVAAL 687 Query: 118 LTIK 121 L ++ Sbjct: 688 LNVE 691 >gi|253701124|ref|YP_003022313.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter sp. M21] gi|251775974|gb|ACT18555.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter sp. M21] Length = 869 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ + +FL + L GY V+ + A +++ E L+++DI+MPEMDG Sbjct: 20 HRILIVDASPTQTKFLTQVLAAQGYSVLVSQSAEEALEQIAELSPDLVISDILMPEMDGF 79 Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR LD L V+ +T S ++KP+ L++ V+ LL Sbjct: 80 EFCRRIRGLDQMNSLPVILLTYLNDPTHVLHSLEAGANYFITKPYKTELLLSRVSALL 137 >gi|168705546|ref|ZP_02737823.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 559 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 + IL+A+D+ +R AL +GY V+ +GA A D L + D MP++ Sbjct: 440 GETILVADDETGVRDLAKVALEMSGYTVLVAADGAEALDVFHRAGGRVRLAVLDASMPKL 499 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++ +DP+LKV+F +G+ L P + P + L+KP+ L V +L Sbjct: 500 SGRQVFEALRRVDPELKVLFASGYHGGGLLPADDLPGTRR-LNKPYVPTQLAAAVREML 557 >gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 948 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|220916089|ref|YP_002491393.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953943|gb|ACL64327.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 1079 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 53/106 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD R+ L G+EV+ ++GA A ++ E +++D+ MP++DGI L Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R L P L V+ +T A V ++ L+KP +L Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDEL 727 >gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 230 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 40/67 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+++ + L + Y ++ NG A +K + F L++ D+++P +DGIE Sbjct: 5 RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 64 Query: 64 LARRATE 70 + R+ E Sbjct: 65 VLRKIRE 71 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] gi|133738036|emb|CAL61081.1| putative two-component sensor protein histidine kinase [Herminiimonas arsenicoxydans] Length = 560 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED++ ++ ++ L K+G+ V NG A V++ F ++L D+ MPEMDG+ Sbjct: 440 ILLAEDNEINQKVVVALLKKSGHTVQIAQNGREAVLAVQQGVFDVILMDMHMPEMDGLAA 499 Query: 65 ARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 R + P + + AAV L+ D +A + L+KPF + L + L ++ Sbjct: 500 TRAIRGMPAPACSLPIVALTAAVTLS-DIQTCMDAGMNYFLAKPFRIERLNGILQELFSV 558 Query: 121 K 121 K Sbjct: 559 K 559 >gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 229 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P Sbjct: 2 VGKNILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTS 61 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 GIELARR EL D+ ++ +T A + N + +V ++KPF R+LV Sbjct: 62 GIELARRLKRDELTSDIPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVAR 116 Query: 114 VNRLL 118 + +L Sbjct: 117 LKAVL 121 >gi|115377928|ref|ZP_01465113.1| chemotaxis protein CheY [Stigmatella aurantiaca DW4/3-1] gi|310822835|ref|YP_003955193.1| chemotaxis protein CheY [Stigmatella aurantiaca DW4/3-1] gi|115365088|gb|EAU64138.1| chemotaxis protein CheY [Stigmatella aurantiaca DW4/3-1] gi|309395907|gb|ADO73366.1| Chemotaxis protein CheY [Stigmatella aurantiaca DW4/3-1] Length = 125 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M Q K L+ +D MRR L+ AL + G V + +GA K + F L+LTDI MP Sbjct: 1 MTQIKALVIDDSLAMRRSLMHALQRLGGVVCTEAEDGAEGLKKFTQGEFDLILTDINMPL 60 Query: 59 MDGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 MDG++L R T + + ++ IT AVA + A + L KP + +++ V Sbjct: 61 MDGLKLISHIRQTAENRKVPIVVITTEGAVADRERAMALGASAYLVKPVQSKVVLDTVKE 120 Query: 117 LLTI 120 LL + Sbjct: 121 LLNL 124 >gi|312973380|ref|ZP_07787552.1| sensor evgS domain protein [Escherichia coli 1827-70] gi|310331975|gb|EFP99210.1| sensor evgS domain protein [Escherichia coli 1827-70] Length = 467 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 231 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 290 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 291 TRKLREQNSSLPIWGLTANA 310 >gi|86159555|ref|YP_466340.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776066|gb|ABC82903.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 436 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMD 60 ++LL +DD R + AL G+ VV+ + + ++ EE SL L+TD+VMPE+D Sbjct: 281 HRVLLVDDDALARALIADALAGRGFGVVAERDALAGLLRLAEEIGSLDVLVTDVVMPEVD 340 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSK---PFHLRDLVNEVN 115 G EL RR E+ + DL ++ +T AL A VL+K P + D V +V+ Sbjct: 341 GEELVRRVREVGGERDLPIVAVTASDDPALAARLRACGVDAVLAKRLGPEGIADAVVKVH 400 Query: 116 R 116 R Sbjct: 401 R 401 >gi|66046841|ref|YP_236682.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257548|gb|AAY38644.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 796 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV+ ++G A +++ + F L+L D MP MDG E Sbjct: 674 RVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGYE 733 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R R++ P+L ++ +T A A L+KPF +LV+ +++ + I Sbjct: 734 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWIPI 792 >gi|78222434|ref|YP_384181.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78193689|gb|ABB31456.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 396 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L ED+ ++R L L + ++ + NG + + RE+ ++LTDI MP MDGI Sbjct: 13 LLYVEDEPEIRELLRSVLVRKFPNVDIQTAENGMAGLELFREQRPDIILTDIRMPVMDGI 72 Query: 63 ELARRATELDPDLKVMFITG 82 ++ RR E DP + V+ I+ Sbjct: 73 QMTRRILEEDPAVSVIIISA 92 >gi|329946788|ref|ZP_08294200.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526599|gb|EGF53612.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 202 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++++L+AED+ +R +++ L AGYEVV+ ++G A E L + D+ MP D Sbjct: 10 SRRVLVAEDETLIRLDIVETLTDAGYEVVAEASDGEEAVHLADEHTPDLCVLDVKMPVTD 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 GI A R E + V+ +T F+ L ++A + KPF DL+ Sbjct: 70 GITAAERILE-KHNCAVVMLTAFSQTELVERASAAGAMAYVVKPFTPADLI 119 >gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 948 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|323169009|gb|EFZ54687.1| sensor evgS domain protein [Shigella sonnei 53G] Length = 790 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 554 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 613 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 614 TRKLREQNSSLPIWGLTANA 633 >gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 229 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +DD ++ L + GYE VS NG A K+ +P L++ DI+MPEMDG+ Sbjct: 2 KILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDGM 61 Query: 63 ELARRATELDPDLKVMFITG 82 ++ R + D +L ++ ++ Sbjct: 62 QVVREVRK-DSELPILMLSA 80 >gi|300929237|ref|ZP_07144716.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1] gi|300462803|gb|EFK26296.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1] Length = 904 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|300902839|ref|ZP_07120787.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1] gi|301302388|ref|ZP_07208519.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1] gi|300405106|gb|EFJ88644.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1] gi|300842227|gb|EFK69987.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1] gi|315258041|gb|EFU38009.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 85-1] Length = 904 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|284920828|emb|CBG33891.1| Two-component sensor kinase and response regulator [Escherichia coli 042] Length = 904 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAHAIETLQNSEPFAAALVDFDLPDIDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|260449861|gb|ACX40283.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1] Length = 899 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 668 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 727 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 728 TLARQLAQQYPSL---VLIGFSA 747 >gi|325982532|ref|YP_004294934.1| response regulator receiver modulated diguanylate phosphodiesterase [Nitrosomonas sp. AL212] gi|325532051|gb|ADZ26772.1| response regulator receiver modulated diguanylate phosphodiesterase [Nitrosomonas sp. AL212] Length = 410 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAY---DKVREEPFSLLLTDIVMP 57 N KI++ +DD M + L + L K Y VV+C+NG+ A D + P L+L D+ MP Sbjct: 6 NVKIMILDDDTFMLKLLTRMLAKLDYTSVVTCDNGSDALRKIDHIDTRP-DLILLDLNMP 64 Query: 58 EMDGIELARRATELDPDLKVMFITG 82 +MDGIE R + K++ ++G Sbjct: 65 DMDGIEFVRYLVDRQYHGKLILVSG 89 >gi|253773977|ref|YP_003036808.1| hybrid sensory histidine kinase TorS [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253325021|gb|ACT29623.1| Hpt sensor hybrid histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 899 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 668 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGI 727 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 728 TLARQLAQQYPSL---VLIGFSA 747 >gi|213419730|ref|ZP_03352796.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 458 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 49/106 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 337 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 396 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R +L L V+ +T A LSKP L L Sbjct: 397 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDAL 442 >gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha carboxidovorans OM5] gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha carboxidovorans OM5] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR + P L + ++ D+ A ++KPFHL +++ + LL Sbjct: 62 VLESWRRNKRIMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHLEEVLARIRALL 116 >gi|171060565|ref|YP_001792914.1| two component Fis family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778010|gb|ACB36149.1| two component transcriptional regulator, Fis family [Leptothrix cholodnii SP-6] Length = 182 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 57/107 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLA+DD + L +AL GY V ++GAS+ + + + D+ +P+M G+ L Sbjct: 11 LLLADDDPVFCQVLSRALTARGYVVDMAHDGASSLRLIDDLNPEYAIVDLRLPDMSGLRL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 R +D + K++ +TGF ++A ++ L+KP + D+V Sbjct: 71 VERLKAVDDNTKIIVLTGFGSIATAIEAIKRGATHYLTKPTSVDDIV 117 >gi|241667026|ref|YP_002985110.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862483|gb|ACS60148.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 642 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%) Query: 6 LLAEDDDDM----RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++A DDD + +++ LG +E ++ G A D +RE+ L++ D MP M G Sbjct: 531 IVAVDDDGLVLMNTTLMLEDLGHTVFEAMA---GPEALDILREQQVDLVICDHAMPRMTG 587 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +LA + PD+ ++ TG+A + P+ N L KPF L ++R+ Sbjct: 588 AQLAEAIRKDWPDMPIILATGYAEI---PEGAGIANLPRLGKPFSQAQLAEAISRV 640 >gi|197122882|ref|YP_002134833.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196172731|gb|ACG73704.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 122 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R L AGYEV+ +G A K+ P L+LTD+ MP +D Sbjct: 1 MARCVLVVDDSASVRLAERVVLTGAGYEVLEAVDGQDALTKLAARPVQLVLTDLNMPNLD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ L RA DP + V+ +T + A + A + KPF L+ RL Sbjct: 61 GVGLI-RAVRTDPAHRLTPVVMVTTESEQARKLEGKAAGATGWIVKPFTPEQLLAVAARL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|188579380|ref|YP_001922825.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342878|gb|ACB78290.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 720 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 IL+ ED+ ++ F + L GY V +A ++ PF + +D+VMP M GI Sbjct: 593 ILVVEDNIEIGAFCTQILHDLGYGTVLTQTAEAALAEIEAVPFRFDAVFSDVVMPGMGGI 652 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 ELA+R EL P+L V+ +G++ V Sbjct: 653 ELAKRLRELHPELPVVLTSGYSHV 676 >gi|153855723|ref|ZP_01996737.1| hypothetical protein DORLON_02755 [Dorea longicatena DSM 13814] gi|149751946|gb|EDM61877.1| hypothetical protein DORLON_02755 [Dorea longicatena DSM 13814] Length = 538 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K++L +D+ ++ + K + G+EV S NG A + V + ++LTDI MP MD Sbjct: 11 KVILVDDEAEVIDMIEKKIHWNDLGFEVAGSATNGVKALELVEKLQPDVVLTDIKMPYMD 70 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL+RR P++ +M TGF Sbjct: 71 GLELSRRLNREYPNIYIMLCTGF 93 >gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] Length = 236 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 42/66 (63%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LGK G+EV+ NG++ ++++ L++ DI+MP DG Sbjct: 4 NKQILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHHPDLIILDIMMPGDDG 63 Query: 62 IELARR 67 L ++ Sbjct: 64 FTLCQK 69 >gi|148252134|ref|YP_001236719.1| putative response regulator receiver [Bradyrhizobium sp. BTAi1] gi|146404307|gb|ABQ32813.1| Putative response regulator receiver (CheY-like protein) [Bradyrhizobium sp. BTAi1] Length = 144 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 44/79 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD M+ + + L +AG+ V ++G A + + E F L++ DI MP MDG+E Sbjct: 3 KILVVDDDPVMQMTIQRLLQQAGHAVTVADDGQKAIARFQGESFDLVVMDIFMPGMDGLE 62 Query: 64 LARRATELDPDLKVMFITG 82 R + P ++ +G Sbjct: 63 AMRLILKHAPSTPILMTSG 81 >gi|197119468|ref|YP_002139895.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197088828|gb|ACH40099.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] Length = 458 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD R L + GY V +G A + + + + L++TD+VM ++ G+ Sbjct: 2 ERILLVEDDSFFREIFTDLLKEDGYSVEVAVSGEEALEMIGKGGYHLVVTDLVMRDVSGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 ++ LDP V+ +TG A V Sbjct: 62 DILSTVKRLDPATAVIMVTGHANV 85 >gi|126667877|ref|ZP_01738843.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] gi|126627693|gb|EAZ98324.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] Length = 526 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ + L + L GY ++ N G A + ++L DI+MPEMDG E+ Sbjct: 20 VLLVDDNPQNLKVLYETLKDKGYRLLIANGGEKALELAHCHQPEVILLDIMMPEMDGYEV 79 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 RR + DP D V+F++ ++ + A +SKPF ++++ V Sbjct: 80 CRR-LKADPATADCAVVFLSALDDLSAKVRGFSLGGADYISKPFQSQEVIARV 131 >gi|56419875|ref|YP_147193.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261419545|ref|YP_003253227.1| response regulator receiver protein [Geobacillus sp. Y412MC61] gi|297530485|ref|YP_003671760.1| response regulator receiver protein [Geobacillus sp. C56-T3] gi|319766361|ref|YP_004131862.1| response regulator receiver protein [Geobacillus sp. Y412MC52] gi|56379717|dbj|BAD75625.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261376002|gb|ACX78745.1| response regulator receiver protein [Geobacillus sp. Y412MC61] gi|297253737|gb|ADI27183.1| response regulator receiver protein [Geobacillus sp. C56-T3] gi|317111227|gb|ADU93719.1| response regulator receiver protein [Geobacillus sp. Y412MC52] Length = 118 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 1/115 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+A+D MR L + L K + V NG A + R L++ DI MP M+GIE Sbjct: 4 ILIADDAKFMRVTLARILEKTDHTVAGEAENGKEAVELYRRLRPDLVIMDITMPVMNGIE 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R E+DP K++ + + ++ A + KPF ++ + RLL Sbjct: 64 AVRAIKEIDPGAKIIICSALGQQRMVVEAIEAGAADFIVKPFEETRVLEAIARLL 118 >gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 223 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A +K E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|116051701|ref|YP_789460.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115586922|gb|ABJ12937.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 769 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 646 KRILVVDDSLTVRELERKLLLGRGYDVAVAVDGMDGWNALRSEHFDLLITDIDMPRMDGI 705 Query: 63 E---LARRATELDPDLKVMFIT 81 E L RR + L L VM ++ Sbjct: 706 ELVTLVRRDSRLQ-SLPVMVVS 726 >gi|15598899|ref|NP_252393.1| chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PAO1] gi|107103218|ref|ZP_01367136.1| hypothetical protein PaerPA_01004287 [Pseudomonas aeruginosa PACS2] gi|254236614|ref|ZP_04929937.1| hypothetical protein PACG_02617 [Pseudomonas aeruginosa C3719] gi|9949868|gb|AAG07091.1|AE004789_11 probable chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PAO1] gi|126168545|gb|EAZ54056.1| hypothetical protein PACG_02617 [Pseudomonas aeruginosa C3719] Length = 769 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 646 KRILVVDDSLTVRELERKLLLGRGYDVAVAVDGMDGWNALRSEHFDLLITDIDMPRMDGI 705 Query: 63 E---LARRATELDPDLKVMFIT 81 E L RR + L L VM ++ Sbjct: 706 ELVTLVRRDSRLQ-SLPVMVVS 726 >gi|332829689|gb|EGK02335.1| hypothetical protein HMPREF9455_01605 [Dysgonomonas gadei ATCC BAA-286] Length = 1351 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+ DMR +L L + +V NNG A +K++ ++++TD++MPEM GIE Sbjct: 1100 ILLVEDEYDMRMYLHHEL-SVFFNIVEANNGREALNKLQHLQPNIIVTDVMMPEMSGIEF 1158 Query: 65 ARRATE 70 + E Sbjct: 1159 TKIVKE 1164 >gi|332531139|ref|ZP_08407053.1| response regulator receiver domain-containing protein [Hylemonella gracilis ATCC 19624] gi|332039424|gb|EGI75836.1| response regulator receiver domain-containing protein [Hylemonella gracilis ATCC 19624] Length = 120 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D MR+ + L AGY+VV +G A +K +++ L+LTD MP +DG+ L Sbjct: 4 ILAVDDSPSMRKMVAFTLTGAGYQVVEAADGQEALEKAQQQHVDLVLTDQNMPRLDGLGL 63 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ DP D ++ +T ++ + L KPF L+ + +++ Sbjct: 64 IRK-LRADPKYKDTPILMLTTESSDLMKEAGKTAGATGWLVKPFDPARLLEVIQKVI 119 >gi|323947218|gb|EGB43226.1| TMAO reductase sytem sensor TorS [Escherichia coli H120] Length = 914 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|323170365|gb|EFZ56018.1| sensor protein evgS domain protein [Escherichia coli LT-68] Length = 790 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 554 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 613 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 614 TRKLREQNSSLPIWGLTANA 633 >gi|320200221|gb|EFW74809.1| Sensor protein torS [Escherichia coli EC4100B] Length = 904 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|317405401|gb|EFV85716.1| sensor protein [Achromobacter xylosoxidans C54] Length = 744 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 1/61 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL A+D+ D+R +L ++L A Y+V +GA+A R++P L++TDI+MP MDG+ Sbjct: 225 RILCADDNADLREYL-RSLLAADYDVRIAADGATALRSARQDPPDLVITDIMMPGMDGLT 283 Query: 64 L 64 L Sbjct: 284 L 284 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D L G +V +G A + E +++L DI MP MDG E Sbjct: 604 RILVVDDNTDSADTTAMVLQAFGAQVGVARDGRQALAMLDEFAPAVMLVDIGMPGMDGHE 663 Query: 64 LARR 67 +ARR Sbjct: 664 VARR 667 >gi|313672224|ref|YP_004050335.1| two component, sigma54 specific, transcriptional regulator, fis family [Calditerrivibrio nitroreducens DSM 19672] gi|312938980|gb|ADR18172.1| two component, sigma54 specific, transcriptional regulator, Fis family [Calditerrivibrio nitroreducens DSM 19672] Length = 455 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 7/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D+ R L L K GY V + + +A D + EE +++TD+++P +GI Sbjct: 4 HKILIVDDEPKQREILSYILTKEGYTVFTAADAETALDLMNEE-LDMVITDLLLPGKNGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + A + PD+ ++ ITG + S + KP +N+ LLT+K Sbjct: 63 DFLEEALKRFPDMTIVIITGHGTIDTAVTSIKKGAFDYIQKP------LNKETVLLTVK 115 >gi|312131620|ref|YP_003998960.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311908166|gb|ADQ18607.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1299 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED++D R +L+ L + + + NG A++KV L+++DI MP M G+ Sbjct: 1050 EKILVVEDNEDFRFYLLDNL-REEFALEEARNGEEAWEKVLSYHPDLIVSDINMPGMSGL 1108 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL R+ DP K V+ +T ++ + + + + KPF++ L+ ++ L Sbjct: 1109 ELCRKIRR-DPRTKHIPVILLTAISSDSAQIEGLDSGASDYIIKPFNVELLLTKLRTQLK 1167 Query: 120 IKN 122 K+ Sbjct: 1168 QKS 1170 >gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN ++L+AEDD + L + G++V+ +G A D+ R LL+ DI+MP++D Sbjct: 4 MNARVLVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDETRSRHPDLLVLDIMMPKLD 63 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+++ R D + ++ +T + L D ++KPF R+L Sbjct: 64 GMDVC-RVLRSDSQVPILVLTARDDEDTLLQGLQLGADD-------YMTKPFSPRELAAR 115 Query: 114 VNRLL 118 V LL Sbjct: 116 VRALL 120 >gi|253681444|ref|ZP_04862241.1| response regulator receiver protein [Clostridium botulinum D str. 1873] gi|253561156|gb|EES90608.1| response regulator receiver protein [Clostridium botulinum D str. 1873] Length = 402 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 48/84 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL +D+ + R + + + + YE NNGA A + E ++++DI MPEMD Sbjct: 1 MSKSILFVDDERLILRAIKREMWDSDYETFYANNGAEALKILYENNIDMIVSDIKMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G L ++ L P++ + ++G+A Sbjct: 61 GHNLLKKVKYLYPNVIRIALSGYA 84 >gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 225 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD ++ R L L +AG+ V +G + RE+ L++ D+ +P++DG Sbjct: 2 KRILLIEDDPEVARLLELELKEAGFAVEWAKSGVEGLIRHREKRPDLVVLDLGLPDLDGG 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ARR D D ++ +T AV + L KPFH +L+ + Sbjct: 62 EVARRIRATD-DTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAELLARIQ 113 >gi|307152868|ref|YP_003888252.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306983096|gb|ADN14977.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 125 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 41/62 (66%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +R+ LI+ L K G V+ +G A +++++E L++TD++MP+M+G EL Sbjct: 4 VLIVDDSPSLRQILIELLQKRGINVLEAASGMEAQEQIQKEVPDLVITDLIMPQMNGYEL 63 Query: 65 AR 66 R Sbjct: 64 CR 65 >gi|189461865|ref|ZP_03010650.1| hypothetical protein BACCOP_02531 [Bacteroides coprocola DSM 17136] gi|189431459|gb|EDV00444.1| hypothetical protein BACCOP_02531 [Bacteroides coprocola DSM 17136] Length = 1427 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD+D+R FL + L +EVV+ ++G S ++ + L+++D++MP G Sbjct: 1176 RKILIVEDDNDVREFLKEELSPY-FEVVAESDGTSGLERAKVYDADLIISDVLMPGCSGF 1234 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 EL R+ L D I ALN + + ++KPF L V +L Sbjct: 1235 ELTRK---LKNDFNTSHIPIILLTALNSQEKHLEGVEAGADAYITKPFSSSLLRARVFKL 1291 Query: 118 L 118 + Sbjct: 1292 I 1292 >gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 233 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ DM FL + GY+ V NG D V + L+L D++MPEMDG+E Sbjct: 8 ILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGMEA 67 Query: 65 AR 66 R Sbjct: 68 LR 69 >gi|153004340|ref|YP_001378665.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] gi|152027913|gb|ABS25681.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] Length = 465 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EM 59 M +LL +D+ R L AGY+V + +A ++ F +LLTD+++P + Sbjct: 7 MGNAVLLVDDERFARTVYGDYLRAAGYDVEVADGADTALAQLARRRFDVLLTDVILPGDK 66 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+EL A +LDP + V+ +T V + + L KP L V R L+ Sbjct: 67 DGLELLDAAKQLDPGIGVVVVTALDKVDTAVRAMRAGASDYLVKPVTPEQLQVAVQRCLS 126 Query: 120 IK 121 ++ Sbjct: 127 MR 128 >gi|104782446|ref|YP_608944.1| sensory box histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111433|emb|CAK16153.1| putative sensory box histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 796 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 5/105 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ ILL +DD +R + L + GY V +NG A + + LLLTD MPE++G Sbjct: 679 DRSILLVDDDHLVREMIGDVLRRQGYRVRQAHNGEQALALLDDTT-DLLLTDFAMPELNG 737 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 +LAR A E P L V+F+TG+A + D + V+ KP H Sbjct: 738 AQLARAARERYPQLPVVFLTGYAEL----DGEELPGSLVIQKPVH 778 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+L+ ED ++ L ++G +V S + A +R F L+L D V+P G Sbjct: 7 KLLMVEDSSMDAELILMRLERSGLQVQSRLVFDHVGAEHALRMGTFDLILCDCVLPASSG 66 Query: 62 IELARRATELDPDLKVMFITG 82 E+ A + PD +F++G Sbjct: 67 TEVLAIAQRIAPDTPFIFLSG 87 >gi|104781839|ref|YP_608337.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95110826|emb|CAK15541.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 220 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + L + GY + +G S ++ E F L++ D+ +P MDGIE Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHEAFDLVILDLGLPRMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR L V+ +T A+ L KPF L +L + LL Sbjct: 62 LLRRVRAGGDSLPVLILTARDALDDRISGLDAGADDYLVKPFDLNELKARLRALL 116 >gi|146301662|ref|YP_001196253.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] gi|146156080|gb|ABQ06934.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] Length = 121 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I+LAED+D +R+ L L G+ V ++G A + ++ L+LTDI MP + G+E Sbjct: 2 RIILAEDNDILRKSLSFFLESKGFTVDQFSDGKDALEAIKNNGCDLILTDINMPGISGME 61 Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + L+ D+ V+ +T DS + ++KP L+ +N+LL Sbjct: 62 ITQYVRQTLNSDIPVIILTSSGVEQTELDSFDIGANEFIAKPISPAVLLVRINKLL 117 >gi|225619431|ref|YP_002720659.1| chemotaxis response regulator CheY [Brachyspira hyodysenteriae WA1] gi|46360449|gb|AAS89036.1| chemotaxis response regulator [Brachyspira hyodysenteriae] gi|225214250|gb|ACN82984.1| chemotaxis response regulator CheY [Brachyspira hyodysenteriae WA1] Length = 122 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 M + IL+ +D + R + L K Y VVS ++G + + + + P +++TD+ MP+M Sbjct: 1 MAKTILIVDDSNTARASVEYTLKKGSYTVVSADDGTTGLEVLGKTPNVDMIITDLNMPKM 60 Query: 60 DGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DGIE + ++D ++ +T + + A + L KPF+ L++ V R Sbjct: 61 DGIEFIKHVRKVDQHKYTPILMLTTESQDEKKMEGKAAGASGWLVKPFNPTQLLDVVKRF 120 Query: 118 L 118 L Sbjct: 121 L 121 >gi|323184321|gb|EFZ69697.1| sensor protein evgS domain protein [Escherichia coli 1357] Length = 467 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 231 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 290 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 291 TRKLREQNSSLPIWGLTANA 310 >gi|24112406|ref|NP_706916.1| histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 301] gi|24051280|gb|AAN42623.1| similar to histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 301] gi|313650753|gb|EFS15154.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2a str. 2457T] gi|332759936|gb|EGJ90237.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2747-71] gi|332762781|gb|EGJ93044.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-671] gi|332767790|gb|EGJ97981.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2930-71] gi|333019955|gb|EGK39226.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-304] Length = 809 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 588 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDIDGI 647 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 648 TLARQLAQQYPSL---VLIGFSA 667 >gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLH 61 Query: 64 LARR 67 + +R Sbjct: 62 VLQR 65 >gi|15675449|ref|NP_269623.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71911094|ref|YP_282644.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|139473428|ref|YP_001128144.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|13622640|gb|AAK34344.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71853876|gb|AAZ51899.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|134271675|emb|CAM29908.1| response regulator protein [Streptococcus pyogenes str. Manfredo] Length = 246 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO] gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] Length = 222 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MDG + Sbjct: 3 RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 62 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + R+T D V+ IT A ++KP + +++ V LL Sbjct: 63 LLDSLRSTRFDT--PVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALL 117 >gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 549 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 MNQ IL+ +D+ + FL K L AG++V +G ++V EP L+L D+ Sbjct: 1 MNQSPNTGTILIVDDNPNNLSFLYKTLESAGFQVRVEMDGEGTIEQVEYEPPDLILLDVN 60 Query: 56 MPEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 MP +DG E ++ + D+ ++F+T FA + + + KPF +++ Sbjct: 61 MPVIDGFETCKKLKNNPISKDIPIIFMTAFADINHKIKGLSLGAVDYIPKPFEQEEVLAR 120 Query: 114 V 114 V Sbjct: 121 V 121 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D+ + R L+ L G+EVV+ NG D L+LTD+ MP Sbjct: 425 RKLLVVDDNKENRLVLLNMLEPLGFEVVTAENGQQGLDVAIAIRPDLILTDLFMPVKTAF 484 Query: 63 ELARRATELDPDLKVMFITGFAA 85 + E+ PDLK + I +A Sbjct: 485 TMVPEMREI-PDLKNVPIIALSA 506 >gi|330872539|gb|EGH06688.1| chemotaxis protein CheY [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966330|gb|EGH66590.1| chemotaxis protein CheY [Pseudomonas syringae pv. actinidiae str. M302091] Length = 122 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + AL AGY+V+ +G A +K+ + L+++D+ MP MD Sbjct: 1 MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALNKLTGQKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + +L ++ +T + + + A + KPF ++ V++L+ Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 >gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 616 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 4/118 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE- 63 ILLAED+ + L++ LG GY G + V LLL DI MP M G++ Sbjct: 494 ILLAEDEASVADLLLEYLGYQGYSTNYVGRGNEVIESVHHLRPHLLLIDIQMPGMSGLDV 553 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLL 118 +A + DP++ + I A+A+ D A LSKP L L + R+L Sbjct: 554 IAHLRADPDPEIAQIPIIALTALAMAGDRERCLAAGADDYLSKPVRLEQLGATIRRVL 611 >gi|296450961|ref|ZP_06892708.1| response regulator [Clostridium difficile NAP08] gi|296879073|ref|ZP_06903069.1| response regulator [Clostridium difficile NAP07] gi|296260179|gb|EFH07027.1| response regulator [Clostridium difficile NAP08] gi|296429946|gb|EFH15797.1| response regulator [Clostridium difficile NAP07] Length = 244 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E ++ L D+++P++ Sbjct: 13 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 72 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + E + ++ +T A + + KPF +++L+ V+ L+ Sbjct: 73 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALI 131 >gi|260592155|ref|ZP_05857613.1| DNA-binding response regulator RprY [Prevotella veroralis F0319] gi|260535789|gb|EEX18406.1| DNA-binding response regulator RprY [Prevotella veroralis F0319] Length = 235 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L G++ C +G Y + + + + D++MP+ DG Sbjct: 6 KILLCEDDENLGTLLSEYLQAKGFQADLCPDGEVGYKAFLKNKYDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LA+ + + ++ ++F+T + D ++KPF + +LV + Sbjct: 66 LAQEIRQANAEIPIIFLTAKQLKEDILEGFKIGADD-------YITKPFSMEELVFRIEA 118 Query: 117 LL 118 +L Sbjct: 119 IL 120 >gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1263 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 10/113 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LL ED++ + + L K G V + NGA A +VR E L+L D+ MP MDG Sbjct: 934 RRLLLVEDNEINQEVATQLLKKTGARVRTAENGAEALKEVRAEAPELILMDLQMPVMDGF 993 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 E R RA D I +A ++ D + A V L KP DL Sbjct: 994 EATRTLRAEGYDGP-----IIALSAAVMDDDRRRAREAGVDDHLGKPIESADL 1041 >gi|255012671|ref|ZP_05284797.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. 2_1_7] Length = 1342 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q +L ED++D+ R+L+ A + Y VV NG +K E ++++D+++P M+ Sbjct: 1077 LRQTLLFVEDNEDLCRYLMNAF-QTDYRVVIAKNGKVGLEKAMEILPDVIVSDVMIPVMN 1135 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE A + E + V+ +T A + L KPF L L ++ LL Sbjct: 1136 GIECCEALKMDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLL 1195 >gi|229513307|ref|ZP_04402772.1| sensor histidine kinase CqsS [Vibrio cholerae TMA 21] gi|229349717|gb|EEO14672.1| sensor histidine kinase CqsS [Vibrio cholerae TMA 21] Length = 662 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 544 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPHVGGL 603 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 604 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 631 >gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407] Length = 226 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60 Query: 61 GIELARR 67 G+ + +R Sbjct: 61 GLRVLQR 67 >gi|260588659|ref|ZP_05854572.1| transcriptional regulator, AraC family [Blautia hansenii DSM 20583] gi|260541134|gb|EEX21703.1| transcriptional regulator, AraC family [Blautia hansenii DSM 20583] Length = 324 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 4/84 (4%) Query: 4 KILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +IL+ +D+ R +FL+K G EV +NG A + ++ + +LLTDI MP + Sbjct: 10 RILIVDDEKLERNGIKFLLKKTG-TELEVFEASNGRDALELLKHQTVEILLTDIKMPYVS 68 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+ELA + + P++K++ +G++ Sbjct: 69 GLELAEKVSSQYPEMKIVMFSGYS 92 >gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 219 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD +++ L L +AGY V +G D E L+++D+ MPEMDG Sbjct: 2 KRILVIDDDPILQKILENLLTQAGYLVAVVLSGKQGLDIWLEFQPDLIVSDVRMPEMDGF 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E R R+ + +F++ V + + ++KPF +++L+ ++ R L Sbjct: 62 EFCRYIRSQPTGQLIPFLFLSSQTDVEARVEGHFSGADDYIAKPFEMKELLAKIERQL 119 >gi|163742633|ref|ZP_02150019.1| response regulator [Phaeobacter gallaeciensis 2.10] gi|161384218|gb|EDQ08601.1| response regulator [Phaeobacter gallaeciensis 2.10] Length = 422 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 40/64 (62%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D RR L+ +L K G+EVV +G +A + +P L+L+D +MP M+G+ Sbjct: 18 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDPPDLILSDWMMPGMNGL 77 Query: 63 ELAR 66 E R Sbjct: 78 EFCR 81 >gi|163743182|ref|ZP_02150564.1| sensory box histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] gi|161383599|gb|EDQ07986.1| sensory box histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] Length = 880 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ R + + L G++VV GA R E F L+ DI MPE+DGIE Sbjct: 613 RILVVEDNEINRLLVERMLTNLGHQVVLAPGGAEGVAAARAERFDLIFMDISMPEVDGIE 672 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R R L +++ +T A + A+V++KP L ++R Sbjct: 673 ATRQIREQRLAEGTQIVALTAHVAPRDHARIRDAGLAEVVTKPVSKSTLAEVISR 727 >gi|149376819|ref|ZP_01894576.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358940|gb|EDM47407.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 783 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ R + L K G +V++ N+G +A + PF L+ D VMP +DG E Sbjct: 658 KVLLVEDNPVNRTLTRRLLEKLGCDVMTANDGEAASSLWQWHPFDLIFMDCVMPRVDGFE 717 Query: 64 LARRATELDPD 74 RR + + D Sbjct: 718 ATRRLRQWEKD 728 >gi|108763801|ref|YP_632636.1| sensor histidine kinase/response rgulator [Myxococcus xanthus DK 1622] gi|108467681|gb|ABF92866.1| sensor histidine kinase/response rgulator [Myxococcus xanthus DK 1622] Length = 517 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 +L DD+ + R + + L E++ +G A D +++ P L++TD +P M G+ELA Sbjct: 271 VLVVDDEIIIRMVFRDLMGKECEIIEAASGEEALDLLQQAPVDLIVTDKNLPGMSGLELA 330 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A D +V+ +TG+ ++ + L KPF D + EV LL Sbjct: 331 QQARRRHTDSRVILMTGYPSLVTTQQALELGVVDYLLKPF---DDIREVRALL 380 >gi|94970647|ref|YP_592695.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] gi|94552697|gb|ABF42621.1| response regulator receiver protein [Candidatus Koribacter versatilis Ellin345] Length = 172 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 IL+ +D +R + + L GY+V N+ A ++E P LLL D+++P++ G Sbjct: 56 ILMVDDQPLLREAVCEFLALDGYDVHGANSAGEAIRLLQEGLRP-DLLLCDVLLPDVHGA 114 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LAR A L P+++V+F++G L AP N L KPF L L + +L Sbjct: 115 TLAREACALVPEMQVLFMSGHTPDILG-SEIAPAN--FLQKPFRLDVLSRRLCSML 167 >gi|91787015|ref|YP_547967.1| Fis family two component sigma-54 specific transcriptional regulator [Polaromonas sp. JS666] gi|91696240|gb|ABE43069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Polaromonas sp. JS666] Length = 466 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 57/116 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD DM R L L AGY V + + +A ++ E L+L+D+ +P DG+ L Sbjct: 18 LLVVDDDPDMLRLLTIRLTAAGYRVTAVTSAEAAMTQLHIERPQLVLSDVQLPGRDGLAL 77 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 P L V+ +T + ++ L+KPF + L++++ + L + Sbjct: 78 FDDIRARHPSLPVILLTAHGTIPDAVEATERGVFTYLTKPFDGKGLLDKIAQALAL 133 >gi|89899707|ref|YP_522178.1| response regulator receiver domain-containing protein [Rhodoferax ferrireducens T118] gi|89344444|gb|ABD68647.1| response regulator receiver domain protein [Rhodoferax ferrireducens T118] Length = 122 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I++ +D MR + AL AGY V+ +G A K+ + L+++D+ MP MD Sbjct: 1 MAKTIMIVDDSSSMRMVVTIALKGAGYNVLEGRDGQDALAKLNGQKVHLIISDVNMPVMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI + +L P K ++ +T + + + A + KPF L+ V +L Sbjct: 61 GISFVKAVKQL-PAYKFTPIIMLTTESEESKKREGQAAGAKAWVVKPFKPEQLLGAVQKL 119 >gi|46581630|ref|YP_012438.1| chemotaxis protein CheY [Desulfovibrio vulgaris str. Hildenborough] gi|120601211|ref|YP_965611.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|46451053|gb|AAS97698.1| chemotaxis protein CheY [Desulfovibrio vulgaris str. Hildenborough] gi|120561440|gb|ABM27184.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|311235272|gb|ADP88126.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1] Length = 126 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N +IL+ +D MRR + L + G+ V+ ++G +A++ + ++ +++D MP M Sbjct: 6 NMRILVVDDFSTMRRIIKNILRQLGFSNVIEADDGTTAWETLNKDRVDFVISDWNMPNMT 65 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RA+E D+ + +T A ++ K + + KPF + +++++ Sbjct: 66 GIELLRKVRASEEFGDMPFLMVTAEAQQENIIEAVQAKVSNYIVKPFTAETMKQKIDKIF 125 >gi|83951581|ref|ZP_00960313.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Roseovarius nubinhibens ISM] gi|83836587|gb|EAP75884.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Roseovarius nubinhibens ISM] Length = 440 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A K+ + ++++DI MP MDG++ Sbjct: 2 KIAIVDDEKDMRQSISQWLALSGYDTETFASAEDALKKLGPDYPGIVVSDIKMPGMDGMQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ D L V+ ITG V + ++ L KPF+ D +NE+ + T Sbjct: 62 FLKKLMGADSTLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFN-PDRMNELAKKAT 116 >gi|145220040|ref|YP_001130749.1| two component, sigma54 specific, Fis family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206204|gb|ABP37247.1| two component, sigma54 specific, transcriptional regulator, Fis family [Chlorobium phaeovibrioides DSM 265] Length = 487 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 43/79 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+A+DD+ RR + K GYE + N+G + EE ++L DI MP +DG Sbjct: 20 RKVLIADDDETSRRVFGHFVSKMGYEAIMVNDGRECVQAMAEESPDVVLLDINMPVLDGF 79 Query: 63 ELARRATELDPDLKVMFIT 81 E+ + A + ++ IT Sbjct: 80 EVMQHAKSQNDTTPIIIIT 98 >gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 230 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++R LI +L AG++V + NGA V EE L++ D+++P+M+G Sbjct: 5 RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPDMNGFS 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRLL 118 + +R ++F+T A D NA ++KPF L ++V + +L Sbjct: 65 VTKRLRGAGYTAPILFLT---AKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAIL 119 >gi|283798726|ref|ZP_06347879.1| DNA-binding response regulator DltR [Clostridium sp. M62/1] gi|291073407|gb|EFE10771.1| DNA-binding response regulator DltR [Clostridium sp. M62/1] gi|295090823|emb|CBK76930.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] gi|295116054|emb|CBL36901.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ + + L L + Y V S +G +A + + + + ++ DI+MP++DGI Sbjct: 2 RLLLAEDEAALSKALTAILERNNYSVDSVCDGQAALEYLESDNYDGVILDIMMPKIDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R+ + + V+ +T + V L D+ A L+KPFH R+L+ + Sbjct: 62 VLRKLRQKGSLVPVLLLTAKSEVDDKVLGLDAGAN---DYLTKPFHSRELLARI 112 >gi|298530516|ref|ZP_07017918.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509890|gb|EFI33794.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 546 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + L + L K G E +NG ++E+ F L+L DIVMPEM G+E Sbjct: 423 RILVAEDEPMNQTILARYLDKMGVEYKLVDNGQKVLQALQEDSFDLILLDIVMPEMSGVE 482 Query: 64 LARR 67 + +R Sbjct: 483 VLQR 486 >gi|221210979|ref|ZP_03583959.1| CheA signal transduction histidine kinase [Burkholderia multivorans CGD1] gi|221169935|gb|EEE02402.1| CheA signal transduction histidine kinase [Burkholderia multivorans CGD1] Length = 766 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR E F L++TD+ MP MDG Sbjct: 642 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMDGWNAVRGEAFDLVVTDVDMPRMDG 701 Query: 62 IEL 64 IEL Sbjct: 702 IEL 704 >gi|218887100|ref|YP_002436421.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758054|gb|ACL08953.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 126 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N ++L+ +D MRR + L + G+ VV ++G +A++ + ++ +++D MP+M Sbjct: 6 NMRVLVVDDFSTMRRIIKNILRQLGFTNVVEADDGTTAWEILNKDRIEFVISDWNMPQMT 65 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RA+E D+ + +T A ++ + + + KPF + +++++ Sbjct: 66 GIELLRKVRASEEFADMPFLMVTAEAQQENVIEAVQARVSNYIVKPFTAETMKQKIDKIF 125 >gi|152973211|ref|YP_001338357.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892871|ref|YP_002917605.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae NTUH-K2044] gi|150958060|gb|ABR80090.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545187|dbj|BAH61538.1| copper resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 227 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + LL+ DI++P+++G + Sbjct: 2 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + ++ +T + L KPF +L+ V LL Sbjct: 62 IVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630] gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile] Length = 223 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ M+ +++ + K GY ++ ++G A ++ L++ DI+MP +DG Sbjct: 3 KILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDGFS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + E+ ++ ++ +T ++KPF + L+ +VN LL Sbjct: 63 VCRVSREM-TNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALL 116 >gi|78485439|ref|YP_391364.1| response regulator receiver domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78363725|gb|ABB41690.1| response regulator receiver domain protein (CheY-like) [Thiomicrospira crunogena XCL-2] Length = 118 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L +D MR+ + +GK +E+ NG + + E F ++L+D+ MP MDG+ Sbjct: 3 KVLYIDDASSMRKLVNLVIGKE-FELTLAENGQQGLEALNETAFDVILSDVNMPVMDGLT 61 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++A L+ + ++ +T A+ + A + KPF+ +L N + ++L Sbjct: 62 FLKKARALEAYRFVPILMMTTEASAEMKAQGKALGATGWIVKPFNPDNLANTIRKVL 118 >gi|78486524|ref|YP_392449.1| two component, sigma54 specific, Fis family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78364810|gb|ABB42775.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thiomicrospira crunogena XCL-2] Length = 456 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 57/118 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKILL +DD + + L L G V + A A K+ L+LTD+ M EMDG+ Sbjct: 15 QKILLVDDDTSLLKLLSIRLRSFGLTVETVEGAAEALAKLPTFQPHLVLTDLRMSEMDGL 74 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + + P L V+ +T + ++ + ++KP + +L ++ + LT+ Sbjct: 75 ALYEQIHQQSPTLPVIIMTAHGTIKEAVEATSLGVFGFITKPINHAELTQKIQQALTV 132 >gi|19746500|ref|NP_607636.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|19748707|gb|AAL98135.1| putative two-component response regulator [Streptococcus pyogenes MGAS8232] Length = 246 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLIRQGVRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 251 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY VV+ +G A K R+E L++ D++MP++DG Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVMMPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVA 87 + + + + D+ ++ +T VA Sbjct: 69 YGVCQELRK-ESDVPIIMLTALGDVA 93 >gi|17228424|ref|NP_484972.1| two-component system, regulatory protein [Nostoc sp. PCC 7120] gi|75906731|ref|YP_321027.1| response regulator receiver domain-containing protein [Anabaena variabilis ATCC 29413] gi|17130275|dbj|BAB72886.1| two-component system, regulatory protein [Nostoc sp. PCC 7120] gi|75700456|gb|ABA20132.1| Response regulator receiver domain protein (CheY) [Anabaena variabilis ATCC 29413] Length = 121 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED R + L +G V +G A + ++EEP L++ DIVMP+M+G E+ Sbjct: 4 VLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEPPDLVVLDIVMPKMNGYEV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR DP + + + ++ D ++KPF +LV V +LL Sbjct: 64 CRRLKS-DPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119 >gi|88857165|ref|ZP_01131808.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2] gi|88820362|gb|EAR30174.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2] Length = 781 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K L+AED+ + ++ L G E NNG ++ + L+L DI MPEMDG+ Sbjct: 665 KALIAEDNKVNQIVVLAMLHSQGVETQIANNGKEVVQFAQQNDYDLILMDIQMPEMDGMT 724 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 R + P L ++ +T A + D A V+ KP + L+N +N ++ Sbjct: 725 ACRLIKQSHPQLPIIALT---ANVMTEDIQKYLQAGFDSVIGKPIEQQILLNTINEVI 779 >gi|148254922|ref|YP_001239507.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407095|gb|ABQ35601.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 729 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 4/112 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ + + K L K G+ +NG A V++ + L+L D++MPEMDG+ Sbjct: 602 KVLVAEDNLTNQFVIKKLLDKLGHGYDIVDNGTQAIAAVQKHAYDLVLMDMMMPEMDGLT 661 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 R L P + ++I A A + D A +A + ++KP RD +N Sbjct: 662 ATRMIRSLPPPARDIYIIALTANATSQDHLACTDAGMNDFVTKPV-TRDRLN 712 >gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039] gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162] gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071] gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636] gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679] gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317] gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071] gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636] gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679] gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317] gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039] gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162] gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] Length = 229 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+A+DD ++ L + GYE V +G A K+R P LL+ DI+MPEMDG+ Sbjct: 2 KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 61 Query: 63 ELAR 66 ++ + Sbjct: 62 QVVK 65 >gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] Length = 247 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 14/124 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD +R L K L + GY V + +G + E F++++ DI++P DG Sbjct: 8 NKKILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIMLPGEDG 67 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + + RR + ++ +T + + D + KPF+ R+L+ + Sbjct: 68 LSICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADD-------YIVKPFNPRELLARI 120 Query: 115 NRLL 118 N +L Sbjct: 121 NAVL 124 >gi|291540224|emb|CBL13335.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 77 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +DD ++ + L + Y V+ NG A +K+ P ++L D+ MP MD Sbjct: 1 MNYKILMVDDDRELLKMLNQYFTLKNYTVIIAENGIEAMEKISANP-DIILLDVNMPGMD 59 Query: 61 GIELARRATEL 71 GIE+ RR ++ Sbjct: 60 GIEVCRRIRDM 70 >gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15] gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04] gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C] gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082] gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A] gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B] gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01] gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15] gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B] gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A] gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C] gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04] gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082] Length = 236 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+A+DD ++ L + GYE V +G A K+R P LL+ DI+MPEMDG+ Sbjct: 9 KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 68 Query: 63 ELAR 66 ++ + Sbjct: 69 QVVK 72 >gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21] gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 54/114 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + RF+ + L G+++ +G + V+ LL+ D ++P +DG+ Sbjct: 2 RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + ++ ++ V L+KPFH +L+ + L Sbjct: 62 LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEAL 115 >gi|225175429|ref|ZP_03729424.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169181|gb|EEG77980.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 41/67 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D++ +RR L + L G+ V+ NG+ A + L++ D++MPEMD Sbjct: 1 MTEKILVVDDEEKIRRILRQVLENEGFTVLEAENGSEALSVFLNKNPVLVILDVMMPEMD 60 Query: 61 GIELARR 67 GIE ++ Sbjct: 61 GIEFLKK 67 >gi|169831884|ref|YP_001717866.1| response regulator receiver protein [Candidatus Desulforudis audaxviator MP104C] gi|169638728|gb|ACA60234.1| response regulator receiver protein [Candidatus Desulforudis audaxviator MP104C] Length = 122 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++IL+ +D MR + L K GYE+V +G+ A ++ L+ DI MP M Sbjct: 1 MAKRILIVDDAAFMRMMIKNILTKYGYEIVGEAEDGSMAVKLYKDLRPDLVTMDITMPVM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGIE + DP ++ ++ A+ ++ + KPF ++ + R+L Sbjct: 61 DGIESTKAILAQDPKANIVMVSAMGQQAMVMEAIQAGAKDFIVKPFQQERILQAIERVL 119 >gi|169826882|ref|YP_001697040.1| chemotaxis protein [Lysinibacillus sphaericus C3-41] gi|168991370|gb|ACA38910.1| Chemotaxis protein [Lysinibacillus sphaericus C3-41] Length = 300 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVR---------EEPFSLLL 51 ++IL+AED +R+ L + +AGY+ V NG AY+ + E L++ Sbjct: 172 GKRILIAEDSPLLRKLLFDTMNEAGYDNVEFFENGRDAYEYLEGIAKSGSDIAEHIQLVV 231 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 TDI MP+MDG L R+ E PDL+ + + F+++ Sbjct: 232 TDIEMPQMDGHHLTRKIKE-HPDLQKLPVIIFSSL 265 >gi|163737971|ref|ZP_02145387.1| response regulator receiver modulated serine phosphatase [Phaeobacter gallaeciensis BS107] gi|161388587|gb|EDQ12940.1| response regulator receiver modulated serine phosphatase [Phaeobacter gallaeciensis BS107] Length = 423 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 40/64 (62%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D RR L+ +L K G+EVV +G +A + +P L+L+D +MP M+G+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDPPDLILSDWMMPGMNGL 78 Query: 63 ELAR 66 E R Sbjct: 79 EFCR 82 >gi|107100692|ref|ZP_01364610.1| hypothetical protein PaerPA_01001719 [Pseudomonas aeruginosa PACS2] Length = 858 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +LL +DD +R LG GY+V + A +V R LL+TD +M + G++ Sbjct: 744 VLLVDDDRMVRYTTALLLGDLGYQVSEAASAEEALGEVERGLAPDLLVTDHLMADKTGVQ 803 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA + P L V+ ITG+A L P+ +VL+KPF +L + RLL Sbjct: 804 LAEELRQRFPQLPVLVITGYA--NLRPEQ--LNGFEVLTKPFRHNELAERLARLL 854 >gi|91223612|ref|ZP_01258877.1| response regulator [Vibrio alginolyticus 12G01] gi|269966020|ref|ZP_06180112.1| response regulator [Vibrio alginolyticus 40B] gi|91191698|gb|EAS77962.1| response regulator [Vibrio alginolyticus 12G01] gi|269829416|gb|EEZ83658.1| response regulator [Vibrio alginolyticus 40B] Length = 368 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +NQK+++ DDD + R + A L G++VV NG A ++RE L+L D+ MP + Sbjct: 17 INQKLIMLVDDDPIFRKVTNAYLESQGFKVVEAENGLEALQQLRECQPDLILCDLSMPVL 76 Query: 60 DGIELARRATELDPDLKVMFITG 82 DGIE + P + ++ ++G Sbjct: 77 DGIEFVEEVSLEYPYMPLIVVSG 99 >gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 222 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R + AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEGHFLGDTEPYDAIVLDIGLPQMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ V L+ Sbjct: 62 VLERWRRDGRKMPVLILTARDRWSDKVAGIDAGAD---DYVTKPFHMEEVLARVRALI 116 >gi|332360773|gb|EGJ38581.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 244 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 + NG A+ K + P +LLTDI MP+M+G+ELA+ + P ++F+TG+ Sbjct: 31 IAQAENGREAWQKFQGNPADILLTDINMPQMNGLELAKLVRDQAPKCHIVFLTGY 85 >gi|327542720|gb|EGF29188.1| response regulator receiver protein [Rhodopirellula baltica WH47] Length = 252 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 59/116 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +DD+D+ + L GY+ ++G SA D V + ++L D MP MDG Sbjct: 3 SKRVLIVDDDEDICSNIKDILDDLGYQTDIAHDGRSALDLVDANRYDVVLLDYSMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ L P++ + +T +A + +VL KP L +L+ + +L Sbjct: 63 ATLHQQMVLLQPEIAAIMVTAYAQGDGAQRARDSGIQRVLRKPVDLGELLPLIEQL 118 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM--PEMDGI 62 +L+ +DD D + L L + Y V +N K + + + + D+ + + DG Sbjct: 124 VLVVDDDPDFCKTLWHILRERSYRVSLAHNREDGVRKALDANYQVAVVDLSLCTGQTDGC 183 Query: 63 ELARRATELDPDLKVMFITGF 83 E+ +R E++P ++ + ITG Sbjct: 184 EVLQRVAEVNPAIRTILITGH 204 >gi|312883993|ref|ZP_07743710.1| sensory box sensor histidine kinase/response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368451|gb|EFP95986.1| sensory box sensor histidine kinase/response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 1127 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ R L L GY V++ N+G SA + VR E L+L DI++P+M G ++ Sbjct: 723 ILVVDDEPINLRILNSYLKTEGYRVLTVNDGLSALEAVRNETPQLILLDIMIPDMSGYDV 782 Query: 65 A--RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R T L ++ +T A LSKPF+ ++L+ + Sbjct: 783 CVKLRKTYDHATLPIIMLTALNQTEDRLKGFASGANDFLSKPFNQKELLARI 834 >gi|309792653|ref|ZP_07687106.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oscillochloris trichoides DG6] gi|308225281|gb|EFO79056.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oscillochloris trichoides DG6] Length = 717 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 4/82 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D + +R + + L + G++V NG A +R + F L+L D+VMPE+DG Sbjct: 5 RILVVDDHETIRNMISRQLMQQGHDVTCVANGKDALALLRIQNFDLVLLDMVMPEVDG-A 63 Query: 64 LARRATELDP---DLKVMFITG 82 + R + DP DL V+ I+G Sbjct: 64 MVLRVIKHDPHLSDLPVVIISG 85 >gi|307942832|ref|ZP_07658177.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4] gi|307773628|gb|EFO32844.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4] Length = 232 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +G+SA+D ++ + L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVQTYTDGSSAFDGLQSDKPDLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG 82 RR + DL V+F+T Sbjct: 64 LRRLRQ-SSDLPVIFLTS 80 >gi|294776040|ref|ZP_06741536.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294450178|gb|EFG18682.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1365 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 3/64 (4%) Query: 5 ILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL ED++++ +++ L GK Y ++ NG A + + ++ L+++D++MPEMDG+E Sbjct: 1116 ILLVEDNEELLALMVRLLHGK--YHILKSANGTEALEILAKQEVDLIVSDVMMPEMDGME 1173 Query: 64 LARR 67 L RR Sbjct: 1174 LCRR 1177 >gi|307730902|ref|YP_003908126.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585437|gb|ADN58835.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 280 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L+++L ++ Y V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 115 >gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes 10403S] gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes FSL J2-003] gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] Length = 236 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + ++ ++ +T + L D ++KPF R++V + Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADD-------YMTKPFSPREVVARIKA 115 Query: 117 LL 118 +L Sbjct: 116 IL 117 >gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 245 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 14/120 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L KAGY V + + G SAY+ + +L D+++P MDGI Sbjct: 8 KKILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLPGMDGI 67 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ RR + + ++ +T + L D L+KPF R+++ + Sbjct: 68 EITRRLRQERIETPIIILTARDQEYDKIIGLELGADD-------YLTKPFSPREVIARIK 120 >gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 41/79 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ D+ + K L GY V SC NG A + EE + +L D ++P DG E Sbjct: 2 KILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAMLPGKDGFE 61 Query: 64 LARRATELDPDLKVMFITG 82 + + + VMF+T Sbjct: 62 VLKEIRSQKIETPVMFLTA 80 >gi|218892783|ref|YP_002441652.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218773011|emb|CAW28823.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 857 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +LL +DD +R LG GY+V + A +V R LL+TD +M + G++ Sbjct: 743 VLLVDDDRMVRYTTALLLGDLGYQVSEAASAEEALGEVERGLAPDLLVTDHLMADKTGVQ 802 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA + P L V+ ITG+A L P+ +VL+KPF +L + RLL Sbjct: 803 LAEELRQRFPQLPVLVITGYA--NLRPEQ--LNGFEVLTKPFRHNELAERLARLL 853 >gi|254476057|ref|ZP_05089443.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] gi|214030300|gb|EEB71135.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] Length = 883 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED++ R + K L G+ V GA R + F+L+ DI MP +DGIE Sbjct: 631 ILVVEDNEINRILVEKMLRNLGHRVTLAPGGAEGVAAARAKDFNLIFMDISMPGVDGIEA 690 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R R+ L + ++ +T A + A A+V++KP H L + ++R T+ Sbjct: 691 TRQIRSGHLADGVDIVALTAHVAPQDHARILAAGMAEVVTKPVHKSTLADVIDRRATL 748 >gi|212539900|ref|XP_002150105.1| two-component sensor protein histidine protein kinase, putative [Penicillium marneffei ATCC 18224] gi|210067404|gb|EEA21496.1| two-component sensor protein histidine protein kinase, putative [Penicillium marneffei ATCC 18224] Length = 337 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 9/113 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSL--LLTDIVMPEMDGI 62 LL ED+ ++ ++K L G+E V + NGA A KV+++P S +L DI MP MDG+ Sbjct: 220 LLVEDNIMIQTIMLKMLNIIGFEKVDTAWNGAEAVRKVKQKPLSYNAILMDINMPVMDGV 279 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 + + D+ ++ +TG AL DS+A + + ++KP H + LV+ Sbjct: 280 DATIAIRRMSQDVPIIAMTGN---ALKGDSDAYLASGMNDYIAKPVHRQHLVS 329 >gi|196231944|ref|ZP_03130800.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224066|gb|EDY18580.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 739 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 47/85 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +ILL +D+ D R L L K G+EV + +A + + E F +L++DI +P+ +G Sbjct: 625 HRILLVDDNADTLRILSALLSKRGHEVKTALTAGAALEWLAREQFDVLVSDIGLPDRNGW 684 Query: 63 ELARRATELDPDLKVMFITGFAAVA 87 EL R A ++ + +TG+A A Sbjct: 685 ELMREARARRSQIRGIALTGYALEA 709 >gi|161521478|ref|YP_001584905.1| CheA signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|189352353|ref|YP_001947980.1| two-component system sensor kinase [Burkholderia multivorans ATCC 17616] gi|160345528|gb|ABX18613.1| CheA signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|189336375|dbj|BAG45444.1| two-component system sensor kinase [Burkholderia multivorans ATCC 17616] Length = 766 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR E F L++TD+ MP MDG Sbjct: 642 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMDGWNAVRGEAFDLVVTDVDMPRMDG 701 Query: 62 IEL 64 IEL Sbjct: 702 IEL 704 >gi|149919615|ref|ZP_01908094.1| DNA-binding reponse regulator [Plesiocystis pacifica SIR-1] gi|149819558|gb|EDM78986.1| DNA-binding reponse regulator [Plesiocystis pacifica SIR-1] Length = 229 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + L++ L AGY C +GAS ++ F L++ D+++PE DG Sbjct: 5 RRILIIEDDPGIASGLVRGLRGAGYACELCLDGASGMRQMLAGGFDLVVLDMMLPERDGY 64 Query: 63 EL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 EL ARR P V+ +T + S A +SKPF + +L+ + Sbjct: 65 ELLEARRGRSSVP---VLVLTARTELDDRLRSFELGAADWMSKPFFMDELLARIR 116 >gi|108760999|ref|YP_632634.1| response regulator/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|108464879|gb|ABF90064.1| response regulator/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 457 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ R L G+ V + A + + + F ++TD+++P DG+E Sbjct: 3 RILLVDDEKIARTLYGDYLTAVGHAVTAVGTLQEAKEALAGDRFDAVVTDLILPGGDGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN--AKVLSKPFHLRDLVNEVNRLLTIK 121 + R E P ++V+ ITG V +P A K+ A+ L KP L + V R LT + Sbjct: 63 VLRHVREHHPGVEVVVITGLEKV--DPAVRAIKSGAAEYLVKPVAPEALQHAVRRALTTR 120 Query: 122 N 122 + Sbjct: 121 D 121 >gi|21960793|gb|AAM87351.1|AE013983_4 response regulator for gln (sensor glnL) (nitrogen regulator I, NRI) [Yersinia pestis KIM 10] gi|45434743|gb|AAS60304.1| nitrogen regulation protein [Yersinia pestis biovar Microtus str. 91001] Length = 493 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG V+ ++G D + +LL+DI MP MDG+ L Sbjct: 29 VWIVDDDSSIRWVLERALTGAGLNCVAFDSGNQVLDALATRTPDVLLSDIRMPGMDGLAL 88 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 89 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 143 >gi|15596440|ref|NP_249934.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9947173|gb|AAG04632.1|AE004553_9 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 858 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +LL +DD +R LG GY+V + A +V R LL+TD +M + G++ Sbjct: 744 VLLVDDDRMVRYTTALLLGDLGYQVSEAASAEEALGEVERGLAPDLLVTDHLMADKTGVQ 803 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA + P L V+ ITG+A L P+ +VL+KPF +L + RLL Sbjct: 804 LAEELRQRFPQLPVLVITGYA--NLRPEQ--LNGFEVLTKPFRHNELAERLARLL 854 >gi|15598542|ref|NP_252036.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107102878|ref|ZP_01366796.1| hypothetical protein PaerPA_01003946 [Pseudomonas aeruginosa PACS2] gi|116051361|ref|YP_789806.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890458|ref|YP_002439322.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254236308|ref|ZP_04929631.1| hypothetical protein PACG_02279 [Pseudomonas aeruginosa C3719] gi|254242033|ref|ZP_04935355.1| hypothetical protein PA2G_02759 [Pseudomonas aeruginosa 2192] gi|9949479|gb|AAG06734.1|AE004757_3 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115586582|gb|ABJ12597.1| putative sensor histidine kinase/response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168239|gb|EAZ53750.1| hypothetical protein PACG_02279 [Pseudomonas aeruginosa C3719] gi|126195411|gb|EAZ59474.1| hypothetical protein PA2G_02759 [Pseudomonas aeruginosa 2192] gi|218770681|emb|CAW26446.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 571 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ R L + + G+ V++ NG A E L+L D++MP MDG E Sbjct: 13 ILIAEDNAADRLLLSTIVSRQGHRVLTAGNGLEAVALFETERPQLVLMDVMMPVMDGFEA 72 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 ARR EL P ++F+T + S LSKP++ L +N + R Sbjct: 73 ARRIKQQAGEELVP---IIFLTSLSETEALVQSLEAGGDDFLSKPYNRVILEAKINAMGR 129 Query: 117 L 117 L Sbjct: 130 L 130 >gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 915 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 794 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 853 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 854 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 896 >gi|298530994|ref|ZP_07018395.1| CheA signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509017|gb|EFI32922.1| CheA signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1110 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 +ILL ED D R + K + GYEVV+ +GA A+ +++ P L++TD+ MP MDG Sbjct: 988 QILLVEDSDFFRNQVKKFIQDEGYEVVAAEDGAVAWQYMQDNPGEVQLVVTDLEMPNMDG 1047 Query: 62 IELARRATELDP--DLKVMFITGFAA 85 EL D L V+ +T A Sbjct: 1048 FELTEHIKSDDRFNHLPVLALTSLAG 1073 >gi|257870747|ref|ZP_05650400.1| two component transcriptional regulator [Enterococcus gallinarum EG2] gi|257804911|gb|EEV33733.1| two component transcriptional regulator [Enterococcus gallinarum EG2] Length = 232 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++L+ EDD+D+ L GYEV N+G Y + E + L+L D+++P MD Sbjct: 1 MSVRVLIIEDDEDISMIEKDFLEMEGYEVHIVNDGCVGYHEALTEKYQLILLDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G E+ R + D+ ++ +T + +SKPF +LV V Sbjct: 61 GHEICRNIRD-KVDIPIIMVTAKSEELEKLRGLGIGADDYISKPFSPTELVARV 113 >gi|302873863|ref|YP_003842496.1| PAS/PAC sensor hybrid histidine kinase [Clostridium cellulovorans 743B] gi|307689890|ref|ZP_07632336.1| PAS/PAC sensor hybrid histidine kinase [Clostridium cellulovorans 743B] gi|302576720|gb|ADL50732.1| PAS/PAC sensor hybrid histidine kinase [Clostridium cellulovorans 743B] Length = 522 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ILL +D +D RFL+KA K VV + NG A++K + + L+L DI MP MDG Sbjct: 397 KNILLVDDSED-NRFLMKAFLKKTTLVVDTAENGEEAFEKFKNNNYDLILMDIQMPIMDG 455 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKP 104 R R E++ +L I+ A A + D A VL+KP Sbjct: 456 YTSTRLIRNYEIENNLPKTTISALTAYAFDEDIEKALEAGCNFVLTKP 503 >gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] Length = 232 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 12/124 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +R L AL A Y+ + N A+ + +E L+L D +MP G Sbjct: 3 GRKILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWMMPGTSG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 IELARR E+ +L ++ +T A + N + +V ++KPF R+LV + Sbjct: 63 IELARRLKRDEVTANLPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVARL 117 Query: 115 NRLL 118 +L Sbjct: 118 KAVL 121 >gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31] Length = 228 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 4 KILLAEDDDDMR-RFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KILL EDD+ R L++ + G E+++ +G +A D ++++P ++L D+ +P + G Sbjct: 7 KILLVEDDELFRLGLLVRLQQETGLEIIAEAEDGETALDFIKQQPVDVVLLDVGLPGLGG 66 Query: 62 IELARRATELDPDLKVMFITGFA 84 IE ++ + +P L ++ +T + Sbjct: 67 IETCKQIKQQNPQLPILILTSHS 89 >gi|153864505|ref|ZP_01997387.1| two-component system sensory histidine kinase [Beggiatoa sp. SS] gi|152146000|gb|EDN72613.1| two-component system sensory histidine kinase [Beggiatoa sp. SS] Length = 529 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++ EDD R +++ L K G++V+ NG A ++++ L+L D++MPEMDG E Sbjct: 401 VMVVEDDTVTREMMVRMLHKVGWQVIEAENGDLAMQRLQKHQPDLILLDLMMPEMDGFEF 460 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+ +R L L K GY+VV +GA + ++ + D++MP MDG E+ Sbjct: 281 LLVIDDDEAVRELLDIYLSKVGYQVVGAASGAEGLELAKKIQPDAITLDVMMPGMDGWEV 340 Query: 65 ARRATELDPDLKVMFI 80 +EL D K+ I Sbjct: 341 ---LSELKADPKLAHI 353 >gi|126699346|ref|YP_001088243.1| two-component response regulator [Clostridium difficile 630] gi|254975376|ref|ZP_05271848.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092766|ref|ZP_05322244.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314505|ref|ZP_05356088.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517182|ref|ZP_05384858.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650286|ref|ZP_05397188.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683402|ref|YP_003214687.1| two-component response regulator [Clostridium difficile CD196] gi|260686998|ref|YP_003218131.1| two-component response regulator [Clostridium difficile R20291] gi|115250783|emb|CAJ68607.1| Two-component response regulator [Clostridium difficile] gi|260209565|emb|CBA63183.1| two-component response regulator [Clostridium difficile CD196] gi|260213014|emb|CBE04343.1| two-component response regulator [Clostridium difficile R20291] Length = 440 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KILL +D+ + + K L K GY V +G A + ++++ + L+L+D++M MDG+ Sbjct: 2 KILLVDDELEYGVVMKKILQKKGYLVDIALSGEEAINIIKKDKNYDLVLSDVMMKNMDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 +L R ++ D++V+ +TG+ ++ Sbjct: 62 QLLDRIKSINRDIEVILVTGYGSI 85 >gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 910 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILL DD+++ ++++A L AG EV NG +++ E + L+L D+ MP +DG Sbjct: 789 KILLV-DDNEINLYMMEAILLAAGAEVTLAENGQECLERLEESSYDLILMDVQMPVLDGY 847 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E RR + D + + I A AL+ D A + ++KPF + +L + + L Sbjct: 848 ETTRRIRK-DEKYRALPIIAITANALSDDIEKCFEAGMNDHVAKPFKIEELDASIAKCL 905 >gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 230 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ ILL EDD ++ + K L K G++V ++G K F L++ DI+MP++D Sbjct: 1 MSRHILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIMMPKLD 60 Query: 61 GIELAR 66 G+E+ R Sbjct: 61 GLEVVR 66 >gi|51594380|ref|YP_068571.1| nitrogen regulation protein NR(I) [Yersinia pseudotuberculosis IP 32953] gi|153948743|ref|YP_001399026.1| nitrogen regulation protein NR(I) [Yersinia pseudotuberculosis IP 31758] gi|186893367|ref|YP_001870479.1| nitrogen regulation protein NR(I) [Yersinia pseudotuberculosis PB1/+] gi|51587662|emb|CAH19262.1| nitrogen regulation protein [Yersinia pseudotuberculosis IP 32953] gi|152960238|gb|ABS47699.1| nitrogen regulation protein NR(I) [Yersinia pseudotuberculosis IP 31758] gi|186696393|gb|ACC87022.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Yersinia pseudotuberculosis PB1/+] Length = 470 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG V+ ++G D + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCVAFDSGNQVLDALATRTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|328956092|ref|YP_004373425.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328456416|gb|AEB07610.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 221 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 56/107 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D+ + + L GY V +C +G A + + E + L++ D+ +P DGIE Sbjct: 2 RLLVVEDERDLADAIAEGLRLDGYAVETCADGQMASELLAVESYDLVILDLNLPGKDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R E D+KV+ ++ ++VA + L KPF +L Sbjct: 62 ILRELRESARDIKVLILSARSSVADRVNGLDSGANDYLIKPFAFEEL 108 >gi|313672758|ref|YP_004050869.1| pas/pac sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939514|gb|ADR18706.1| PAS/PAC sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 649 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGI 62 ++L ED+ + + K L + G VV+ N+ A + V E + LL++DI+MP+ +G Sbjct: 532 VMLVEDNKFVSDSISKGLQRFGCRVVTFNDPVEAINAVINEGYRCDLLVSDIIMPKYNGK 591 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 E+ E+ DLKV+FI+G++ + D+ +A + KPF Sbjct: 592 EIYILLKEMIDDLKVIFISGYSEDVI-KDTLDKSDACFIQKPF 633 >gi|322434361|ref|YP_004216573.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] gi|321162088|gb|ADW67793.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX9] Length = 154 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 13/106 (12%) Query: 3 QKILLAEDDDD----MRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIV 55 +K++L D ++ +R FL++ GY V+S A + + + LL+ D++ Sbjct: 4 KKVILCVDSNEQTLSVRTFLLET---RGYRVISSQTAQGALEILEQTEQGTMDLLIADLL 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNA 98 +P+MDG EL RRA ++ P L + ++G AL D+ PK A Sbjct: 61 LPQMDGNELVRRAKQMHPMLPALIVSGTVTSFDRALAADAFLPKGA 106 >gi|317130677|ref|YP_004096959.1| integral membrane sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315475625|gb|ADU32228.1| integral membrane sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 1015 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++K+++A+D+ + L++ L + GY +++ +NG ++ E P L+L DI+MP M Sbjct: 678 DKKVIIADDNHSNIKVLLETLKREGYFIIAVDNGNDVLKQLEEHPDVDLVLLDIMMPGMS 737 Query: 61 GIELAR--RATELDPDLKVMFIT-GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ + R T +L V+ +T F A + + N L KP + +L +N L Sbjct: 738 GYEVCQKIRETYSLTELPVLMLTAAFLADDMVAAFQSGAN-DFLHKPIDIAELKTRMNNL 796 Query: 118 LTIK 121 + +K Sbjct: 797 IVMK 800 >gi|269102303|ref|ZP_06155000.1| response regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268162201|gb|EEZ40697.1| response regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 414 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++KIL+ ED R FL+ ++ + GY+ V+ +G A +++ ++L D+ +P+M Sbjct: 16 MDKKILVLEDHAFQRWFLVNSIKQLGYQSVLEAASGQEALAICQQQAIDIILCDLELPDM 75 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL-----SKPF---HLRDLV 111 DGIE+ R+ +E L ++ + L S + + ++ +KP HL L+ Sbjct: 76 DGIEVLRKLSEQKKALSIILCSAVDESVLCTVSKMVEASNLVLLGQATKPIEKDHLSQLL 135 Query: 112 NE 113 N+ Sbjct: 136 NK 137 >gi|322420344|ref|YP_004199567.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126731|gb|ADW14291.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 872 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +LL +D++ +R + L + G+EV++ +G A + + +L+L D+ MP MDG + Sbjct: 749 VLLVDDEEAIRTIGTEFLRELGFEVITARDGCEALEMYQAHRDIALVLLDLTMPHMDGEQ 808 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +DP +KV+ +GF+ ++ A ++ KP+ L L Sbjct: 809 CFLELRRIDPAVKVIMSSGFSEHEVSRKFVGKGLAGLIQKPYKLSGL 855 >gi|256389375|ref|YP_003110939.1| response regulator receiver protein [Catenulispora acidiphila DSM 44928] gi|256355601|gb|ACU69098.1| response regulator receiver protein [Catenulispora acidiphila DSM 44928] Length = 206 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 9/108 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D + L LG G+E+V+ +G A V E F+++L D+ MP MDG E Sbjct: 16 KILLVDDRPENLLALESILGSLGHELVTAASGEQALRAVLREEFAVILLDVRMPGMDGFE 75 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSN----APKNAKVLSKPF 105 +A R E D ++F+T A P A A L+KPF Sbjct: 76 VAAHIRLRERSRDTPIIFLT---AAGDGPHQTLRGYAAGAADYLTKPF 120 >gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4] gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ R L++AL +AGY V +G + EP+ ++ DI +P MDGI Sbjct: 2 RILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEGHYLGDTEPYDAVILDIGLPTMDGIT 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGAD---DYVTKPFHVEEVLARIRALI 116 >gi|218700495|ref|YP_002408124.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI39] gi|218370481|emb|CAR18288.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli IAI39] Length = 914 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNSSGAQVVAVGNAAHAIETLQNSEPFAAALVDFDLPDIDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|222110930|ref|YP_002553194.1| signal transduction histidine kinase, nitrogen specific, ntrb [Acidovorax ebreus TPSY] gi|221730374|gb|ACM33194.1| signal transduction histidine kinase, nitrogen specific, NtrB [Acidovorax ebreus TPSY] Length = 720 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 10 DDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGIELAR 66 DDD FL+ + L + GYEV + A D ++ P + LL+TD MP G++L R Sbjct: 606 DDDQALVFLVQRLLRRRGYEVSGFTDPHQATDALQAHPERYDLLVTDYNMPGYSGLDLVR 665 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A + DL V +G+ + + A ++ KP + +L V+RL Sbjct: 666 AARTIRSDLPVALASGYVTAEIEQAALAEGARALIHKPNDVEELCATVDRL 716 >gi|170026398|ref|YP_001722903.1| nitrogen regulation protein NR(I) [Yersinia pseudotuberculosis YPIII] gi|169752932|gb|ACA70450.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Yersinia pseudotuberculosis YPIII] Length = 470 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG V+ ++G D + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCVAFDSGNQVLDALATRTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|192290811|ref|YP_001991416.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284560|gb|ACF00941.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 707 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 10/112 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 + +LL ED D+ G+ G+ VV N +A + + R L+ +DIVMP M G Sbjct: 585 KTLLLVEDHPDVASVAADYAGQCGFTVVPANCAEAAVEVLNRRRDIDLVFSDIVMPGMSG 644 Query: 62 IELARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDL 110 +ELAR E P+ V+ +G+ +A AL+ + +L KP+ L ++ Sbjct: 645 LELARLIREHHPETPVVLASGYSDRSASALS------EGFALLQKPYTLDEM 690 >gi|163801605|ref|ZP_02195503.1| sensor histidine kinase/response regulator LuxN [Vibrio sp. AND4] gi|159174522|gb|EDP59324.1| sensor histidine kinase/response regulator LuxN [Vibrio sp. AND4] Length = 681 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +R+F L K G+EV+ +G A + + E L+L DI MP M G+ Sbjct: 563 RTIMVVDDNESLRKFTAMLLEKQGFEVIQAEDGLQAINSLNENDVDLILMDIEMPVMGGV 622 Query: 63 ELARR 67 E +R+ Sbjct: 623 EASRQ 627 >gi|114775365|ref|ZP_01450933.1| Multi-sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] gi|114553476|gb|EAU55857.1| Multi-sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] Length = 623 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59 ++ ILL +DD + L + GY V++ NG A RE + +L+L D+VMP + Sbjct: 502 DEMILLVDDDRALLEAHEALLTQLGYRVMTAVNGIEAIRLYREHGDGIALVLMDVVMPVL 561 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ A+R L+ + +++F++G+ P++ +L+KP + +L Sbjct: 562 GGVAAAKRIMALNKEARIIFVSGYDRDHDITSELMPEHQLMLNKPLDVIEL 612 >gi|32473303|ref|NP_866297.1| sporulation initiation phosphotransferase F [Rhodopirellula baltica SH 1] gi|32397983|emb|CAD78077.1| probable sporulation initiation phosphotransferase F [Rhodopirellula baltica SH 1] Length = 252 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 59/116 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +DD+D+ + L GY+ ++G SA D V + ++L D MP MDG Sbjct: 3 SKRVLIVDDDEDICSNIKDILDDLGYQTDIAHDGRSALDLVDANRYDVVLLDYSMPGMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ L P++ + +T +A + +VL KP L +L+ + +L Sbjct: 63 ATLHQQMVLLQPEIAAIMVTAYAQGDGAQRARDSGIQRVLRKPVDLGELLPLIEQL 118 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM--PEMDGI 62 +L+ +DD D + L L + Y V +N K + + + + D+ + + DG Sbjct: 124 VLVVDDDPDFCKTLWHILRERSYRVSLAHNREDGVRKALDANYQVAVVDLSLCSGQTDGC 183 Query: 63 ELARRATELDPDLKVMFITGF 83 E+ +R E++P ++ + ITG Sbjct: 184 EVLQRVAEVNPAIRTILITGH 204 >gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 4/125 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++LL +D+ +R + L ++G+ V +N +D +++ L+++D++MP++D Sbjct: 1 MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G + ++ E DP + + + A + D A V L KPF +LV V L Sbjct: 61 GYQFLKQLRE-DPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENL 119 Query: 118 LTIKN 122 L +N Sbjct: 120 LIRRN 124 >gi|88798780|ref|ZP_01114363.1| histidine kinase DhkJ [Reinekea sp. MED297] gi|88778543|gb|EAR09735.1| histidine kinase DhkJ [Reinekea sp. MED297] Length = 719 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 41/65 (63%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++LLAED+ ++ +++ L + G +V +C NG A +K++ + L+L D MP +DG Sbjct: 597 NSRVLLAEDNLLNQKVVLRMLEQTGVQVDTCVNGREAIEKLKTNHYDLVLMDCYMPRLDG 656 Query: 62 IELAR 66 +E R Sbjct: 657 LEATR 661 >gi|91977507|ref|YP_570166.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91683963|gb|ABE40265.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 121 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED++ + L GY+ +NG A D VR+ L+L DI +P++ Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGYEALDLVRKLHPDLILMDIQLPQVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+++ R + DP+L+ + + A A+ D + LSKP + + V R Sbjct: 61 GLDVTRWIKD-DPELRHIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRF 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|108809511|ref|YP_653427.1| nitrogen regulation protein NR(I) [Yersinia pestis Antiqua] gi|108810415|ref|YP_646182.1| nitrogen regulation protein NR(I) [Yersinia pestis Nepal516] gi|145601122|ref|YP_001165198.1| nitrogen regulation protein NR(I) [Yersinia pestis Pestoides F] gi|150260914|ref|ZP_01917642.1| nitrogen regulation protein [Yersinia pestis CA88-4125] gi|161484736|ref|NP_671100.2| nitrogen regulation protein NR(I) [Yersinia pestis KIM 10] gi|161511482|ref|NP_991427.2| nitrogen regulation protein NR(I) [Yersinia pestis biovar Microtus str. 91001] gi|162421177|ref|YP_001604668.1| nitrogen regulation protein NR(I) [Yersinia pestis Angola] gi|165926113|ref|ZP_02221945.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Orientalis str. F1991016] gi|165940209|ref|ZP_02228739.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Orientalis str. IP275] gi|166011453|ref|ZP_02232351.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Antiqua str. E1979001] gi|166213750|ref|ZP_02239785.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Antiqua str. B42003004] gi|167402088|ref|ZP_02307565.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418828|ref|ZP_02310581.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427037|ref|ZP_02318790.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927243|ref|YP_002345118.1| nitrogen regulation protein NR(I) [Yersinia pestis CO92] gi|229836131|ref|ZP_04456299.1| nitrogen regulation protein [Yersinia pestis Pestoides A] gi|229839870|ref|ZP_04460029.1| nitrogen regulation protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841952|ref|ZP_04462107.1| nitrogen regulation protein [Yersinia pestis biovar Orientalis str. India 195] gi|229900597|ref|ZP_04515721.1| nitrogen regulation protein [Yersinia pestis Nepal516] gi|270488042|ref|ZP_06205116.1| nitrogen regulation protein [Yersinia pestis KIM D27] gi|294502131|ref|YP_003566193.1| nitrogen regulation protein [Yersinia pestis Z176003] gi|108774063|gb|ABG16582.1| nitrogen regulation protein [Yersinia pestis Nepal516] gi|108781424|gb|ABG15482.1| nitrogen regulation protein [Yersinia pestis Antiqua] gi|115345854|emb|CAL18712.1| nitrogen regulation protein [Yersinia pestis CO92] gi|145212818|gb|ABP42225.1| nitrogen regulation protein [Yersinia pestis Pestoides F] gi|149290322|gb|EDM40399.1| nitrogen regulation protein [Yersinia pestis CA88-4125] gi|162353992|gb|ABX87940.1| nitrogen regulation protein NR(I) [Yersinia pestis Angola] gi|165911841|gb|EDR30488.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Orientalis str. IP275] gi|165921973|gb|EDR39150.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Orientalis str. F1991016] gi|165989599|gb|EDR41900.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Antiqua str. E1979001] gi|166205152|gb|EDR49632.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Antiqua str. B42003004] gi|166962822|gb|EDR58843.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048463|gb|EDR59871.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053964|gb|EDR63795.1| nitrogen regulation protein NR(I) [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681936|gb|EEO78028.1| nitrogen regulation protein [Yersinia pestis Nepal516] gi|229690262|gb|EEO82316.1| nitrogen regulation protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696236|gb|EEO86283.1| nitrogen regulation protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706579|gb|EEO92585.1| nitrogen regulation protein [Yersinia pestis Pestoides A] gi|262360209|gb|ACY56930.1| nitrogen regulation protein [Yersinia pestis D106004] gi|262364156|gb|ACY60713.1| nitrogen regulation protein [Yersinia pestis D182038] gi|270336546|gb|EFA47323.1| nitrogen regulation protein [Yersinia pestis KIM D27] gi|294352590|gb|ADE62931.1| nitrogen regulation protein [Yersinia pestis Z176003] gi|320017066|gb|ADW00638.1| nitrogen regulation protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 470 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG V+ ++G D + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCVAFDSGNQVLDALATRTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|332530707|ref|ZP_08406638.1| two component, sigma54 specific, Fis family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332039875|gb|EGI76270.1| two component, sigma54 specific, Fis family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 491 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 59/113 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ +DD DM R L L AGY V++ + +A ++ E L+L+D+ +P DG Sbjct: 6 SSTLLVVDDDADMLRLLTLRLEAAGYRVLTAASAETALTQLALERPQLVLSDVRLPGKDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + L P L V+ +T ++ ++ + L+KPF ++L++++ Sbjct: 66 LALFDEIHAQHPMLPVILLTAHGSIPDAVEATSRGVYTYLTKPFEGKELLDKI 118 >gi|330950716|gb|EGH50976.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae Cit 7] Length = 791 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 668 KRVLVVDDSLTVRELERKLLLSRGYQVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 727 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 728 ELVTLLRRDTRLQ-SLPVMVVS 748 >gi|327485553|gb|AEA79959.1| Sensor histidine kinase CqsS [Vibrio cholerae LMA3894-4] Length = 660 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 542 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 601 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + D K + I G+ N+PK Sbjct: 602 EATRLIRGSEYDYKNIPIIGYTG------DNSPK 629 >gi|313106226|ref|ZP_07792476.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310878978|gb|EFQ37572.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 858 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +LL +DD +R LG GY+V + A +V R LL+TD +M + G++ Sbjct: 744 VLLVDDDRMVRYTTALLLGDLGYQVSEAASAEEALGEVERGLAPDLLVTDHLMADKTGVQ 803 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA + P L V+ ITG+A L P+ +VL+KPF +L + RLL Sbjct: 804 LAEELRQRFPQLPVLVITGYA--NLRPEQ--LNGFEVLTKPFRHNELAERLARLL 854 >gi|260433895|ref|ZP_05787866.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Silicibacter lacuscaerulensis ITI-1157] gi|260417723|gb|EEX10982.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Silicibacter lacuscaerulensis ITI-1157] Length = 409 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 56/116 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LL +DD +R L + L A V+ + +A D ++ ++L+DI MP D Sbjct: 1 MIRSVLLVDDDAAVREALAQTLELAELTVIPAGSFVAAKDHIQAGFPGVILSDIRMPGRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G L A +DPDL V+ +TG + + + L KP DL+ ++R Sbjct: 61 GFHLLAHARSVDPDLPVILLTGEGDIPMAVQAMGQGAFDFLEKPCAAADLLAVLDR 116 >gi|256830618|ref|YP_003159346.1| response regulator receiver sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579794|gb|ACU90930.1| response regulator receiver sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 348 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D + L++ LG Y+VV+ +G A + P ++L D+VMP MDG Sbjct: 7 SKILVVDDAEVNIDILVEFLGGE-YDVVTAASGQRALEIAVTAPPDIILLDVVMPGMDGF 65 Query: 63 ELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 E RR + E D+ ++FIT VA A ++KPF+ Sbjct: 66 EACRRLKSDERTADIPIIFITALDDVAAETTGLALGAIDFITKPFN 111 >gi|224538284|ref|ZP_03678823.1| hypothetical protein BACCELL_03175 [Bacteroides cellulosilyticus DSM 14838] gi|224520069|gb|EEF89174.1| hypothetical protein BACCELL_03175 [Bacteroides cellulosilyticus DSM 14838] Length = 1277 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ ++R FL L ++ Y V++ NG D+ RE L+++DI+MP MDG+++ Sbjct: 1207 ILIVEDNVELRNFLSDILSES-YRVLTATNGQEGLDQAREYIPDLIISDIMMPAMDGLDM 1265 Query: 65 ARRATE 70 + E Sbjct: 1266 VKNIKE 1271 >gi|219670593|ref|YP_002461028.1| AraC family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540853|gb|ACL22592.1| two component transcriptional regulator, AraC family [Desulfitobacterium hafniense DCB-2] Length = 265 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ +D+ +R + LI ++ EV +GA A D V+E+ ++L DI MP +D Sbjct: 9 KLLIVDDEPIIRQGIKQLINFQEQSISEVYEAEDGALALDIVKEKRPDIVLADINMPNLD 68 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+ LAR +DP+++V ITG+ Sbjct: 69 GLNLAREIKAVDPEIRVAVITGY 91 >gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 234 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 18/127 (14%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+A+D+ D+ + + L AGY V+ +G SA ++ R+ +L++ D+++PEM G Sbjct: 7 NKRILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSG 66 Query: 62 IELA---RRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLV 111 +E+ +R T + + V+ +T A + L D ++KPF R+LV Sbjct: 67 LEVCKVLKRETATNR-IPVIMLTAKAEEVDRIVGLELGADD-------YMTKPFSPRELV 118 Query: 112 NEVNRLL 118 V +L Sbjct: 119 LRVKSVL 125 >gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7] gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7] Length = 223 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +D+ D+R + L K G+EV+ +NG A + E L + D++MP MD Sbjct: 1 MKAKVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFIT 81 G EL E D+ V+ +T Sbjct: 61 GFELVENLKEF-KDVPVIMLT 80 >gi|167588550|ref|ZP_02380938.1| DNA-binding response regulator CreB [Burkholderia ubonensis Bu] Length = 233 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MNQ IL+ ED+ + ++ ALG G + V C G +A +++RE F L++ D+ +P++ Sbjct: 1 MNQPNILVVEDELAIADTIVYALGTDGMQTVHCTLGHAALERLREARFDLVVLDVGLPDI 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 +G E+ R D+ V+F+T Sbjct: 61 NGFEVCRTLRTFT-DVPVIFLT 81 >gi|150402474|ref|YP_001329768.1| response regulator receiver protein [Methanococcus maripaludis C7] gi|150033504|gb|ABR65617.1| response regulator receiver protein [Methanococcus maripaludis C7] Length = 119 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED++D+ + L YEV+ ++G ++V+E P L++ DI+MP M G Sbjct: 2 KKILVVEDEEDILNLVKIILEINNYEVIVAHDGYQGLEQVKENP-DLIILDIMMPGMTGW 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + ++ V+ +T A ++ + K + KPF DL+ +V+ +L Sbjct: 61 EFLDKIRNEGFEIPVIVLTANAQMSTLETAINKKVDDCVVKPFDREDLMEKVSSIL 116 >gi|28868704|ref|NP_791323.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851943|gb|AAO55018.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 793 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 670 KRVLVVDDSLTVRELERKLLVGRGYDVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 729 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 730 ELVTLLRRDTRLQ-SLPVMVVS 750 >gi|32265521|ref|NP_859553.1| two-component response regulator family protein [Helicobacter hepaticus ATCC 51449] gi|32261569|gb|AAP76619.1| two-component response regulator family protein [Helicobacter hepaticus ATCC 51449] Length = 224 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL AEDD D LG ++ NG A + + L+LTDI+MP+M+GIEL Sbjct: 11 ILYAEDDTDTANLTNMVLGDYVGRLLIAKNGQEALNLFKLHKIDLVLTDILMPKMNGIEL 70 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 A R + PD+ V+ T D+ + + KP ++ +L++ +N+ Sbjct: 71 INAIRNSYTHPDVPVVITTAHTETKYLLDAIRLRVDGYILKPINVEELLHALNK 124 >gi|254234370|ref|ZP_04927693.1| hypothetical protein PACG_00213 [Pseudomonas aeruginosa C3719] gi|254239611|ref|ZP_04932933.1| hypothetical protein PA2G_00228 [Pseudomonas aeruginosa 2192] gi|126166301|gb|EAZ51812.1| hypothetical protein PACG_00213 [Pseudomonas aeruginosa C3719] gi|126192989|gb|EAZ57052.1| hypothetical protein PA2G_00228 [Pseudomonas aeruginosa 2192] Length = 858 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +LL +DD +R LG GY+V + A +V R LL+TD +M + G++ Sbjct: 744 VLLVDDDRMVRYTTALLLGDLGYQVSEAASAEEALGEVERGLAPDLLVTDHLMADKTGVQ 803 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA + P L V+ ITG+A L P+ +VL+KPF +L + RLL Sbjct: 804 LAEELRQRFPQLPVLVITGYA--NLRPEQ--LNGFEVLTKPFRHNELAERLARLL 854 >gi|330975439|gb|EGH75505.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 783 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 660 KRVLVVDDSLTVRELERKLLLSRGYQVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 719 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 720 ELVTLLRRDTRLQ-SLPVMVVS 740 >gi|330896016|gb|EGH28239.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. japonica str. M301072PT] Length = 783 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 660 KRVLVVDDSLTVRELERKLLLSRGYQVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 719 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 720 ELVTLLRRDTRLQ-SLPVMVVS 740 >gi|317471123|ref|ZP_07930495.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901437|gb|EFV23379.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 525 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++ +DD +R +L + A KAGYE+ + +G A VRE+ +++TDI MP MD Sbjct: 3 RTMIVDDDFLVRSYLKQLDAWEKAGYEITADVRDGEEALHAVREQAPDVIVTDISMPLMD 62 Query: 61 GIELARRATEL 71 GIEL R+ E+ Sbjct: 63 GIELIRKVREM 73 >gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 225 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ ED+ ++ +L + L G++V ++G + RE L++ D+++P +D Sbjct: 1 MQQRILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 GIE+ARR D+ ++ +T +V PD A L KPF +L+ + Sbjct: 61 GIEVARR-LRAASDVPIIILTARDSV---PDRVTGLEAGADDYLVKPFAFAELLARIR 114 >gi|298483236|ref|ZP_07001415.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298270553|gb|EFI12135.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1336 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1076 LLVVEDTTDMLEFLAKNLGNT-YTIHTAANGKEALECLETTTVDLIISDIVMPHMDGFEL 1134 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1135 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1189 Query: 118 L 118 L Sbjct: 1190 L 1190 >gi|295085833|emb|CBK67356.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1323 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1076 LLVVEDTTDMLEFLAKNLGNT-YTIHTAANGKEALECLETTTVDLIISDIVMPHMDGFEL 1134 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1135 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1189 Query: 118 L 118 L Sbjct: 1190 L 1190 >gi|294806803|ref|ZP_06765629.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294445973|gb|EFG14614.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1349 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1085 LLVVEDTTDMLEFLAKNLGNT-YTIHTAANGKEALECLETTTVDLIISDIVMPHMDGFEL 1143 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1144 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1198 Query: 118 L 118 L Sbjct: 1199 L 1199 >gi|294646970|ref|ZP_06724588.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292637692|gb|EFF56092.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1351 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1085 LLVVEDTTDMLEFLAKNLGNT-YTIHTAANGKEALECLETTTVDLIISDIVMPHMDGFEL 1143 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1144 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1198 Query: 118 L 118 L Sbjct: 1199 L 1199 >gi|293369296|ref|ZP_06615883.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635626|gb|EFF54131.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1323 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1076 LLVVEDTTDMLEFLAKNLGNT-YTIHTAANGKEALECLETTTVDLIISDIVMPHMDGFEL 1134 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1135 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1189 Query: 118 L 118 L Sbjct: 1190 L 1190 >gi|262405747|ref|ZP_06082297.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262356622|gb|EEZ05712.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1342 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1076 LLVVEDTTDMLEFLAKNLGNT-YTIHTAANGKEALECLETTTVDLIISDIVMPHMDGFEL 1134 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1135 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1189 Query: 118 L 118 L Sbjct: 1190 L 1190 >gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] Length = 231 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + F+ K L +AG++V +NG A E + + + D ++P +DG+ Sbjct: 2 RVLLVEDDVSLSSFVEKGLREAGHQVEVTDNGKHALTLCMAENYDVAIVDRMLPGLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + ++F+T V + L+KPF +L+ V L Sbjct: 62 LVKALRAAQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKPFAFSELLARVTAL 115 >gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 248 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA-YDKVREEPFSLLLTDIVMPEMDG 61 +L+ EDD +R L AL AGY V + + G +A ++ R +P L++ D+ +P++DG Sbjct: 13 HNVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQP-DLIVLDVGLPDIDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R V+F+T V + ++KPFH+++++ + +L Sbjct: 72 FAVTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAIL 128 >gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium kansasii ATCC 12478] Length = 240 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++ L +L G+EV + +NGA A D+ RE ++ D++MP MDG Sbjct: 15 RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 75 VLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 127 Query: 117 LL 118 +L Sbjct: 128 IL 129 >gi|237716978|ref|ZP_04547459.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229442961|gb|EEO48752.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1331 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1065 LLVVEDTTDMLEFLAKNLGNT-YTIHTAANGKEALECLETTTVDLIISDIVMPHMDGFEL 1123 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1124 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1178 Query: 118 L 118 L Sbjct: 1179 L 1179 >gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD + + L K GY+VV +G +A + ++ + L++ DI+MP+MDG E+ Sbjct: 6 ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R+ ++ ++F++ + L D ++KPF +LV VN Sbjct: 66 TRQ-IRTKQNMPIIFLSAKTSDFDKVTGLVLGADD-------YMTKPFTPIELVARVNAQ 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|255655801|ref|ZP_05401210.1| two-component response regulator [Clostridium difficile QCD-23m63] Length = 232 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E ++ L D+++P++ Sbjct: 1 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + E + ++ +T A + + KPF +++L+ V+ L+ Sbjct: 61 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALI 119 >gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 915 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 794 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 853 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 854 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 896 >gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 915 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 794 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 853 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 854 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 896 >gi|196231107|ref|ZP_03129967.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224937|gb|EDY19447.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1042 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++L +D++ + + LG+ GYEV +A EP F +++TD+ MP + Sbjct: 901 ERLLYVDDEEPLVYLTAQVLGRLGYEVTGFTEAEAALKAFLAEPDRFDVVITDLSMPRLS 960 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA R ++ P + V+ TG+ + + ++ KP + DL + ++R+ Sbjct: 961 GRDLAARILKVRPKVPVILATGYIRPQDTESARSLGIRDLILKPNTVEDLGHTLHRIF 1018 >gi|168701414|ref|ZP_02733691.1| two-component response regulator [Gemmata obscuriglobus UQM 2246] Length = 121 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + L+ +D R+ + AL A + V+ NG A DK+ ++++D+ MP MD Sbjct: 1 MAKTALIVDDSLTFRQMVAMALSDAKFTVIEACNGQEALDKLAGARVDVIISDVNMPVMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI ++A P LK ++ +T + + A + KPF LV V L Sbjct: 61 GITFVKQA-RARPQLKSTPIILLTTESQTEMKQQGKAAGATGWIVKPFKAAQLVQVVTDL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|160884867|ref|ZP_02065870.1| hypothetical protein BACOVA_02857 [Bacteroides ovatus ATCC 8483] gi|156109902|gb|EDO11647.1| hypothetical protein BACOVA_02857 [Bacteroides ovatus ATCC 8483] Length = 1336 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED DM FL K LG Y + + NG A + + L+++DIVMP MDG EL Sbjct: 1076 LLVVEDTTDMLEFLAKNLGNT-YTIHTAANGKEALECLETTTVDLIISDIVMPHMDGFEL 1134 Query: 65 AR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + + + ++ ++ L+ ++A + KPF L + +N L Sbjct: 1135 LKSIRSDNMLCHIPFILLSALDSIDSKIAGLDYGADA-----YIEKPFSLSHMKATINNL 1189 Query: 118 L 118 L Sbjct: 1190 L 1190 >gi|149002910|ref|ZP_01827821.1| response regulator [Streptococcus pneumoniae SP14-BS69] gi|147758913|gb|EDK65908.1| response regulator [Streptococcus pneumoniae SP14-BS69] Length = 77 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 39/67 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GIELARR 67 G+E+ +R Sbjct: 61 GMEVCKR 67 >gi|11498647|ref|NP_069875.1| chemotaxis response regulator (cheY) [Archaeoglobus fulgidus DSM 4304] gi|2649557|gb|AAB90207.1| chemotaxis response regulator (cheY) [Archaeoglobus fulgidus DSM 4304] Length = 121 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR+ L L G+++ NG A + ++ ++ DIVMPEM+GI Sbjct: 3 KVLIVDDTAFMRKLLRNILFSGGFDIAGEAENGKQAVEMYKQLKPDIVTMDIVMPEMNGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E + ++DP KV+ T + + + KPF ++ E+ ++ Sbjct: 63 EALKAIKKIDPSAKVVMCTAVGQEQMVKAAIKLGAKGYIVKPFQAPKVIEELKKV 117 >gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ EDD+ + + L K L GY V +G +A + RE L++ D+++P M Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ +R L + V I A L+ D LSKPF++ +L+ + + Sbjct: 61 GLEVCQR---LRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAV 117 Query: 118 L 118 L Sbjct: 118 L 118 >gi|329576541|gb|EGG58048.1| putative transcriptional regulatory protein WalR [Enterococcus faecalis TX1467] Length = 159 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 15/120 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+AR + D+ ++ +T + L D ++KPF R+LV V Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADD-------YVTKPFSNRELVARVK 113 >gi|330818416|ref|YP_004362121.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia gladioli BSR3] gi|327370809|gb|AEA62165.1| C4-dicarboxylate transport transcriptional regulatory protein [Burkholderia gladioli BSR3] Length = 454 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD+ +RR +++L AG+EV + +A + E +++DI +P G+E Sbjct: 6 QVIYIEDDELVRRAAVQSLQLAGFEVAGFGSAEAAEKAILGERVGAVVSDIRLPGASGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E ++ V+ +TG + + + + KPF L+ V R + Sbjct: 66 LLAQCRERAAEVPVILVTGHGDITMAVQAMRDGAYDFIEKPFATERLIETVRRAI 120 >gi|330831800|ref|XP_003291944.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum] gi|325077858|gb|EGC31544.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum] Length = 1468 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 44/81 (54%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+D + +++ L K GY + NG A + + P L+L D MPEMDG Sbjct: 1317 ILVAEDNDINIKVIVRQLEKLGYTAIIGINGLKALEAIGSVPICLILLDCQMPEMDGFTC 1376 Query: 65 ARRATELDPDLKVMFITGFAA 85 ++ E++P+ + + I A Sbjct: 1377 SKIIREIEPNCQRVPIIAMTA 1397 >gi|310642323|ref|YP_003947081.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247273|gb|ADO56840.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 226 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 19/120 (15%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPEMDGIELA 65 ED++ +R F++ L + G+EV+ + G A + VR+ +LL D+++P MDG E+ Sbjct: 2 EDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALL--DVMVPGMDGFEVC 59 Query: 66 RRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E + + ++F+T A+++ D + +SKPF +L+ + LL Sbjct: 60 RRIRETNERIGIIFLTAKVQEQDKVYALSVGADDH-------VSKPFSPTELIARIQSLL 112 >gi|257440578|ref|ZP_05616333.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Faecalibacterium prausnitzii A2-165] gi|257196901|gb|EEU95185.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Faecalibacterium prausnitzii A2-165] Length = 224 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD + L L GYE + NG +A D + + LLL D++MP+MDG Sbjct: 3 KILVAEDDVSTNKLLCAILKINGYEAIPAFNGEAALDIIDHQHIDLLLCDVMMPKMDGFA 62 Query: 64 LAR 66 L + Sbjct: 63 LTQ 65 >gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 224 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A +K E P +L+ D+++P+ DG E Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEGP-DVLILDVMLPDTDGYE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 62 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 114 Query: 117 L 117 + Sbjct: 115 M 115 >gi|255282810|ref|ZP_05347365.1| two-component response regulator [Bryantella formatexigens DSM 14469] gi|255266584|gb|EET59789.1| two-component response regulator [Bryantella formatexigens DSM 14469] Length = 540 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+ L ED+ MR + + K G+E V ++G AY +++E +L+TDI MP MD Sbjct: 3 KVFLVEDEVVMRNGIKNNIPWEKEGFEFVGEASDGELAYPLIKKEKPDILITDIKMPFMD 62 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL+R + P +K++ ++G+ Sbjct: 63 GLELSRIVKKEMPQIKILILSGY 85 >gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1323 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ + + L K G + NG A + +R P+ L+L D+ MPE+DG+E Sbjct: 1070 RILVAEDNIVNQMVVRGILEKFGLHADTVANGFEALEALRRIPYDLVLMDVQMPELDGLE 1129 Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 +RR E +K + I A A D NA + SKP R L ++R+L Sbjct: 1130 ASRRIRDGEAGEKMKDVPIVALTAHARTEDREICLNAGMDEYTSKPVAPRVLFRILDRML 1189 Query: 119 T 119 + Sbjct: 1190 S 1190 >gi|256005436|ref|ZP_05430399.1| response regulator receiver protein [Clostridium thermocellum DSM 2360] gi|281417532|ref|ZP_06248552.1| response regulator receiver protein [Clostridium thermocellum JW20] gi|255990576|gb|EEU00695.1| response regulator receiver protein [Clostridium thermocellum DSM 2360] gi|281408934|gb|EFB39192.1| response regulator receiver protein [Clostridium thermocellum JW20] gi|316940438|gb|ADU74472.1| response regulator receiver protein [Clostridium thermocellum DSM 1313] Length = 117 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D MR L L + G++VV NG A K +E ++ DI MP DG Sbjct: 2 KRILVVDDAGFMRASLKMMLERHGHQVVGEAENGLVAVTKYKEIRPDIVTMDITMPVCDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 I+ + E DPD KV+ I+ D+ + KPF ++ + +L Sbjct: 62 IKAVKMIKEFDPDAKVIMISSMGQECFVRDAILAGAKGFIVKPFKEDYVIQAIEKL 117 >gi|167747393|ref|ZP_02419520.1| hypothetical protein ANACAC_02113 [Anaerostipes caccae DSM 14662] gi|167652755|gb|EDR96884.1| hypothetical protein ANACAC_02113 [Anaerostipes caccae DSM 14662] Length = 531 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++ +DD +R +L + A KAGYE+ + +G A VRE+ +++TDI MP MD Sbjct: 9 RTMIVDDDFLVRSYLKQLDAWEKAGYEITADVRDGEEALHAVREQAPDVIVTDISMPLMD 68 Query: 61 GIELARRATEL 71 GIEL R+ E+ Sbjct: 69 GIELIRKVREM 79 >gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39] gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39] Length = 224 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 54/114 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + RF+ + L G+++ +G + V+ LL+ D ++P +DG+ Sbjct: 2 RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L ++ + ++ ++ V L+KPFH +L+ + L Sbjct: 62 LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEAL 115 >gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 230 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++R L +L AG+ V + NGA A V EE L++ D+++P+M+G Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMNGFG 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R ++F+T ++KPF L ++V + +L Sbjct: 66 VTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAIL 120 >gi|152983865|ref|YP_001349929.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150959023|gb|ABR81048.1| two-component response regulator [Pseudomonas aeruginosa PA7] Length = 239 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD + L + L +G+EV C +G R + L+L DI++P DG+E Sbjct: 10 RLLAIEDDPTLGAHLFRHLNGSGFEVTWCRDGEEGLAAARNGAYDLILMDIMLPGRDGLE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ E + L V+ ++ A + L KPF L +L ++ +L Sbjct: 70 ILRQLRE-EQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAIL 123 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ L L Y V ++G +A++ ++ + L+L D+++P +DGI Sbjct: 2 KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ + ++ +TG + A+ D+ A + KPF +LV V LL Sbjct: 62 LCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGAD---DYVVKPFDEEELVARVRALL 116 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L +DD + L L G +V++ ++ ++ +R+ LL+ D+ MP +GIE Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 64 LARRATELDP---DLKVMFIT 81 L + DP +L ++F+T Sbjct: 442 LC-QVVRNDPQWSELPILFLT 461 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +DD +R L L + GY VV+ G A + +++ D++MP M+G E Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWE 1439 >gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLH 61 Query: 64 LARR 67 + +R Sbjct: 62 VLQR 65 >gi|330940710|gb|EGH43718.1| response regulator receiver:ATP-binding region, ATPase-like:stage II sporulation E [Pseudomonas syringae pv. pisi str. 1704B] Length = 454 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + + G+ V+S NG A + E L+L D +MP MDG E Sbjct: 10 ILIADDSASDRLLLSTIVARQGHRVLSAGNGVEAVAIFKAESPQLILMDAIMPVMDGFEA 69 Query: 65 ARRATELDPD--LKVMFITGFA---AVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 ARR + + + ++F+T A+A D+ +SKP++ L +N +NR Sbjct: 70 ARRIKAMAGESLVPIIFLTSLTEGEALARCLDAGGD---DFMSKPYNPLVLAAKINAMNR 126 Query: 117 L 117 L Sbjct: 127 L 127 >gi|323498425|ref|ZP_08103421.1| chemotaxis protein CheV [Vibrio sinaloensis DSM 21326] gi|323316498|gb|EGA69513.1| chemotaxis protein CheV [Vibrio sinaloensis DSM 21326] Length = 308 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EVVS +G AY+K+ E + SL+++DI Sbjct: 182 RRILIADDSTVARKQVERAITSLGFEVVSVKDGKEAYEKLVEMAAEGSIYDQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR +L +L V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRHADLK-NLYVILHSSLSGV 275 >gi|307823161|ref|ZP_07653391.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307735936|gb|EFO06783.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 232 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ EDD RRFL L G+ ++ NG + ++ + L++ D+ +P++DG Sbjct: 5 NPLILIIEDDPQTRRFLKTTLCNRGWRIIEAENGKTGLSMIKSDSPDLVILDLGLPDIDG 64 Query: 62 IELARRATELDPDLKVMFIT 81 I + +R +L DL V+ ++ Sbjct: 65 ISVTQRLRQLS-DLPVLILS 83 >gi|299534542|ref|ZP_07047874.1| chemotaxis protein [Lysinibacillus fusiformis ZC1] gi|298729915|gb|EFI70458.1| chemotaxis protein [Lysinibacillus fusiformis ZC1] Length = 300 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVR---------EEPFSLLL 51 ++IL+AED +R+ L + +AGY+ V NG AY+ + E L++ Sbjct: 172 GKRILIAEDSPLLRKLLFDTMNEAGYDNVEFFENGRDAYEYLEGIAKSGSDIAEHIQLVV 231 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 TDI MP+MDG L R+ E PDL+ + + F+++ Sbjct: 232 TDIEMPQMDGHHLTRKIKE-HPDLQKLPVIIFSSL 265 >gi|294673368|ref|YP_003573984.1| DNA-binding repsonse regulator RprY [Prevotella ruminicola 23] gi|294472466|gb|ADE81855.1| DNA-binding repsonse regulator RprY [Prevotella ruminicola 23] Length = 234 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L G+ C +G + + + F + + D++MP+ DG Sbjct: 6 KILLCEDDENLGMLLREYLQAKGFVAELCADGEAGFKAFLKTKFDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LA+ + D+ ++F+T L D ++KPF + +LV + Sbjct: 66 LAQEIRSANTDVPIIFLTAKTLKEDILEGFKLGADD-------YITKPFSMEELVFRIEA 118 Query: 117 LL 118 +L Sbjct: 119 IL 120 >gi|238924396|ref|YP_002937912.1| response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Eubacterium rectale ATCC 33656] gi|238876071|gb|ACR75778.1| response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Eubacterium rectale ATCC 33656] Length = 220 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD+D+ + L GY+ +G DK+ + + LLL DI++PE++G EL Sbjct: 4 ILIVEDDNDINNLICNTLKAEGYQCERAFDGKEGADKIEQNRYDLLLLDIMLPEINGYEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D V+ I+ V + KPF + +L+ V +L Sbjct: 64 LDYVRRI-GDTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVL 116 >gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] Length = 230 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I + ED+ + RFL L G+E NG AY+++ + F L+L D+++P MDG+ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R E+ L ++ +T V ++KPF + +L+ + L Sbjct: 66 ICKRVREV-SSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNAL 119 >gi|225568038|ref|ZP_03777063.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM 15053] gi|225163134|gb|EEG75753.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM 15053] Length = 1004 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPEM 59 ++ILLAED++ R L G++V NG A + + F +L DI MP M Sbjct: 878 RRILLAEDNELNREIAQSILEMHGFDVTCAPNGREALECFCRSETGTFDAILMDIRMPVM 937 Query: 60 DGIELARRA-TELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 DG+E ARR T PD + + + A A + D+ + + LSKP + ++ +N Sbjct: 938 DGLEAARRIRTSGRPDARTVPVIALTANAFDEDTRKSIASGMDGHLSKPLQVEQMLVTLN 997 >gi|209884910|ref|YP_002288767.1| cell division response regulator DivK [Oligotropha carboxidovorans OM5] gi|209873106|gb|ACI92902.1| cell division response regulator DivK [Oligotropha carboxidovorans OM5] Length = 121 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED++ + L GY+ V +NG A RE L+L DI +PE+ Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTVGTSNGREALRLAREHRPDLILMDIQLPEVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ R + D +L+ I A A+ D + LSKP + + V R Sbjct: 61 GLEVTRWIKD-DAELRATPIVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRF 119 Query: 118 L 118 + Sbjct: 120 V 120 >gi|167835571|ref|ZP_02462454.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 113 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G++ Sbjct: 5 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RR + +L V+ +T +V ++KPF L +L Sbjct: 65 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNEL 111 >gi|241206011|ref|YP_002977107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859901|gb|ACS57568.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 305 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D + F+ AL ++G+ V+ +GA+A V L+L D VMP MDG E Sbjct: 11 VLLVDDSAEALGFMTDALEQSGFSVLIATSGAAALGIVERITPDLILLDAVMPSMDGFET 70 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 RR A + V+F+TG + LSKP ++ +L Sbjct: 71 CRRLKANATVAQVPVVFMTGLTETEHVVHALESGGVDYLSKPINIDEL 118 >gi|158318231|ref|YP_001510739.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113636|gb|ABW15833.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 231 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 55/106 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ + L AL G+EV + +G A R+ ++ DI++P+MDG+E Sbjct: 7 RILVVDDENTLSELLSMALRYEGWEVRTAQDGRGALRAARDFRPDAVVLDIMLPDMDGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 + R+ P++ V+F+T AV ++KPF L + Sbjct: 67 VLRKLRADSPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEE 112 >gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] Length = 477 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D + + L + L + Y++ NG A + +P L+L DIVMPEMDG Sbjct: 11 ENILIVDDHPENLKILTQMLSQKNYKLRKAINGEMALNAAFSKPPDLILLDIVMPEMDGY 70 Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ + E + ++ V+FI+ + ++KPF +++++ V L + Sbjct: 71 QVCQHIKENPITSEIPVIFISALDEAFNKVKAFEMGGVDYITKPFQIKEVLARVQLQLRL 130 Query: 121 KN 122 ++ Sbjct: 131 QH 132 >gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 234 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 8/116 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPE 58 M ++IL+ ED++ + L L GY V S +G S + ++E ++L D ++P+ Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLV 111 +DG+E+ RR ++ + V+F+T V D A +A L+KPF++ +L+ Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVG---DKVAGLDAGADDYLTKPFNIEELM 125 >gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] Length = 240 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 127 Query: 117 LL 118 +L Sbjct: 128 IL 129 >gi|71018525|ref|XP_759493.1| hypothetical protein UM03346.1 [Ustilago maydis 521] gi|46098981|gb|EAK84214.1| hypothetical protein UM03346.1 [Ustilago maydis 521] Length = 647 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD RR K L G + +G +A +K+ +E + L+L DIVMP +DGI Sbjct: 330 RVLLVDDDQVCRRLSSKFLQVFGCSIDYAVDGMTAVNKMNQEKYDLVLMDIVMPNLDGIS 389 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D + ++ +T + + + + +L KPF L+N + + L Sbjct: 390 ATSLIRQFDSNTPIISMTSNSGPSELINYMSSGMTDILPKPFTKEGLLNMLEKHL 444 >gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator PHOP [Mycobacterium tuberculosis H37Rv] gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator PHOP [Mycobacterium bovis AF2122/97] gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 94_M4241A] gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T92] gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T17] gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis 210] gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN R506] gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN V2475] gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium tuberculosis H37Rv] gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium bovis AF2122/97] gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CDC1551A] gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis W-148] gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] Length = 247 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 134 Query: 117 LL 118 +L Sbjct: 135 IL 136 >gi|330508055|ref|YP_004384483.1| response regulator receiver domain-containing protein [Methanosaeta concilii GP-6] gi|328928863|gb|AEB68665.1| response regulator receiver domain protein [Methanosaeta concilii GP-6] Length = 134 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 3/112 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD + ++ L GY + +NG A + ++L+L DI MPEMDG++ Sbjct: 21 ILIAEDDPANQLVALRMLKTLGYNADTVDNGLEALIAMESRSYNLVLMDIQMPEMDGLQA 80 Query: 65 ARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 AR + P+ +++F+TG + + + +SKP L L ++ Sbjct: 81 ARIIRKRWPEGPRIIFVTG--CTSRRDECISEGGDGFISKPISLHQLQEAID 130 >gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D+ ++RR L L G+EV+ +NGA A + R L++ D++MPE+DG Sbjct: 14 KILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPELDGFA 73 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 + R ++ ++ +T VA Sbjct: 74 VVER-IRAQSEVPIILLTALGDVA 96 >gi|303257132|ref|ZP_07343146.1| DNA-binding response regulator VicR [Burkholderiales bacterium 1_1_47] gi|302860623|gb|EFL83700.1| DNA-binding response regulator VicR [Burkholderiales bacterium 1_1_47] Length = 235 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +RR L + L G++V + ++GA A Y+K E+P L+L D++MPE+DG Sbjct: 6 ILIVDDESKIRRLLAQNLELEGFDVQTASDGAQALEVYNKSVEKP-DLILLDLMMPEIDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + +R + D+ V+ ++ + + +SKPF++ +L+ + +L Sbjct: 65 MSMLKRLRK-SSDVPVIILSAKDERPMVIEGFREGADDFVSKPFYIEELMERIRAVL 120 >gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 259 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+ EDD +MR + K L + G+ V NGA +D + P L+L D+++P Sbjct: 23 LEAHILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPVDLVLLDVMLPGQS 82 Query: 61 GIELAR 66 G++L R Sbjct: 83 GLDLCR 88 >gi|317152722|ref|YP_004120770.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316942973|gb|ADU62024.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 130 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 57/116 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D+ L K + + G + ++G A +R E F + + D+ + MDG Sbjct: 7 NIRLLIVDDEKGFTEVLAKRMTRRGIAATTASSGEEAVRLLRGEDFDIAILDLKLEGMDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +E+ + LDP+L V+ +TG + + S A LSKP L+ +V R Sbjct: 67 VEILKIFRLLDPELPVLMLTGHGSESAVKASMRLGAADYLSKPIDFEVLMAKVLRF 122 >gi|256824697|ref|YP_003148657.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256688090|gb|ACV05892.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 244 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 7/105 (6%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++AEDD+D+ + L +A+ + G++V +G SA R E +LL+ DI +P MDG+E+ Sbjct: 21 IIAEDDEDIAQPLARAMRREGFDVTVVGDGPSALVTAR-EGCTLLILDIGLPRMDGLEVC 79 Query: 66 RRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHL 107 RR V+ +T A + D+ A ++KPF L Sbjct: 80 RRLRAEGHTFPVLMLTARAGEIDTVVGLDAGAD---DYVTKPFRL 121 >gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 7/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ R+L L G+ +G S +K + L+L D+++PE+ GIEL Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 65 ARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E D+ ++ IT V DS A L+KPF + +L + LL Sbjct: 73 CRRIRE-TKDVPIIMITARGEVPDIVTGLDSGA---NDYLAKPFAIEELFARIRVLL 125 >gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 246 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD D+ L AL G+++ + +GASA RE ++ D+++P+ DG Sbjct: 20 RVLVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVMLPDTDGFA 79 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + D+ V+F+T V ++KPF L ++V + LL Sbjct: 80 VLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLL 134 >gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family [Thioalkalivibrio sp. K90mix] Length = 229 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL EDD +R L L KAGY V + +A + E+P L+L D ++P+ Sbjct: 1 MAVKILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLLEDPPDLILLDWMLPDTS 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 G++ AR +A+ + D+ ++ +T A + + + V ++KPF R+LV Sbjct: 61 GLDWARTLKASPITKDIPIIMLT-----ARGEEEDRVRGLDVGTDDYVTKPFSPRELVAR 115 Query: 114 VNRLL 118 + +L Sbjct: 116 IKAVL 120 >gi|224419137|ref|ZP_03657143.1| two-component response regulator [Helicobacter canadensis MIT 98-5491] gi|253828072|ref|ZP_04870957.1| response regulator [Helicobacter canadensis MIT 98-5491] gi|313142643|ref|ZP_07804836.1| DNA-binding response regulator [Helicobacter canadensis MIT 98-5491] gi|253511478|gb|EES90137.1| response regulator [Helicobacter canadensis MIT 98-5491] gi|313131674|gb|EFR49291.1| DNA-binding response regulator [Helicobacter canadensis MIT 98-5491] Length = 222 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 +IL+ EDD DM++ L+ L K+G E ++ ++ A + ++ + F L + DI++PEMDG+ Sbjct: 3 QILIVEDDLDMQKLLVDYLKKSGMEAIATDSPNEALEMLKSKRNFDLAVLDIMLPEMDGL 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL ++ ++ DL ++ + + L+K + +LV +N LL Sbjct: 63 ELCKKIRQI-SDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALL 117 >gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016] gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 235 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 40/67 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+++ + L + Y ++ NG A +K + F L++ D+++P +DGIE Sbjct: 10 RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 69 Query: 64 LARRATE 70 + R+ E Sbjct: 70 VLRKIRE 76 >gi|186475411|ref|YP_001856881.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184191870|gb|ACC69835.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 240 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS--AYDKVREEPFSLLLTDIVMPEMDGI 62 + + +DD +RR L + + AG+EV + + A+ V P ++L D+ +P++ G+ Sbjct: 8 VYVVDDDPSVRRALTRLIRSAGHEVEAYGSAREFLAHWGVERTPACVVL-DVQLPDLSGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R ELD L ++F+TG +A+ + L+KP DL++ ++ L Sbjct: 67 ELQR---ELDARLPIIFLTGHGDIAMTVGAIKAGATDFLTKPVRDDDLLHAIDHAL 119 >gi|332756173|gb|EGJ86524.1| sensor protein evgS domain protein [Shigella flexneri 2747-71] gi|333001718|gb|EGK21284.1| sensor protein evgS domain protein [Shigella flexneri K-218] gi|333002170|gb|EGK21734.1| sensor protein evgS domain protein [Shigella flexneri K-272] Length = 450 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 214 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 273 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 274 TRKLREQNSSLPIWGLTANA 293 >gi|322835071|ref|YP_004215098.1| Fis family transcriptional regulator [Rahnella sp. Y9602] gi|321170272|gb|ADW75971.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family [Rahnella sp. Y9602] Length = 470 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + ++G D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCTTFDSGNEVLDAIATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|318606418|emb|CBY27916.1| two-component sensor protein RcsC [Yersinia enterocolitica subsp. palearctica Y11] Length = 955 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 47/106 (44%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG L Sbjct: 835 ILVVDDHPINRRLLADQLTALGYRVITANDGLDALAVLNTNSVDIVLTDVNMPNMDGYRL 894 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R EL+ + V+ +T A LSKP L L Sbjct: 895 THRLRELNHNFPVIGVTANALAESKLRCIEAGMDNCLSKPVTLDTL 940 >gi|315606855|ref|ZP_07881864.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315251520|gb|EFU31500.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1328 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q I++AEDDD++ ++L KA + + V C NG A + V +E SL+++DI+MP MDG Sbjct: 1071 QHIIVAEDDDEIAQYL-KAELEKDFRVTLCPNGQEALNTVFKEMPSLVVSDIMMPVMDGN 1129 Query: 63 ELARR 67 L R Sbjct: 1130 TLCAR 1134 >gi|308187341|ref|YP_003931472.1| Signal transduction histidine kinase [Pantoea vagans C9-1] gi|308057851|gb|ADO10023.1| Signal transduction histidine kinase [Pantoea vagans C9-1] Length = 869 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 52/83 (62%), Gaps = 2/83 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 N+ IL+ +D+ +R+ L + L + GY + C +G +A +R+ P LL++D+++P E+ Sbjct: 734 NRLILVLDDEPAVRQTLCEHLHQLGYLTLECGDGEAALALLRQTPDIDLLISDLMLPGEI 793 Query: 60 DGIELARRATELDPDLKVMFITG 82 +G E+ R+A + P L + I+G Sbjct: 794 NGAEVIRQAQQSWPQLATLLISG 816 >gi|289675198|ref|ZP_06496088.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. syringae FF5] Length = 469 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 346 KRVLVVDDSLTVRELERKLLLSRGYQVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 405 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 406 ELVTLLRRDTRLQ-SLPVMVVS 426 >gi|229827580|ref|ZP_04453649.1| hypothetical protein GCWU000182_02969 [Abiotrophia defectiva ATCC 49176] gi|229788218|gb|EEP24332.1| hypothetical protein GCWU000182_02969 [Abiotrophia defectiva ATCC 49176] Length = 534 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 V + NG KV+ ++ TDI MPEMDG+E A A +++ LK++F+TG+ Sbjct: 31 VTTAKNGREGIQKVKANDIDIIFTDIKMPEMDGLEFACEAKKINEKLKIVFLTGYDNFEF 90 Query: 89 NPDSNAPKNAKVLSKPFH-------LRDLVNEVN 115 ++ + L KP + ++ L N++N Sbjct: 91 AQEAIRLGVSDYLLKPMNFIKLDKLIKKLCNDIN 124 >gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC 15579] gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R L L GY V G A + + E +L++ DI+MP+MD Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKARCGKEALEILEREEVNLMVLDIMMPDMD 60 Query: 61 GIELARRATE 70 G+E+ +RA E Sbjct: 61 GLEVCKRARE 70 >gi|170742826|ref|YP_001771481.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197100|gb|ACA19047.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 683 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDGI 62 +LL +DD+ + +++L + Y V+ N A A + ++ E +L +D+VMP M+G Sbjct: 563 VLLVDDDEQVLGMAVESLEELRYRVIVARNAAEALEHLKGVERIDILFSDVVMPGGMNGS 622 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + P ++++ +G+ A NPD VL+KP+ +L + +L Sbjct: 623 QLAAEAQRVRPGIRILLTSGYVA---NPDEGQVIGQGKLPVLNKPYRRDELARSLRLVL 678 >gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 41/70 (58%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R L L GY V G A + + E +L++ DI+MP+MD Sbjct: 1 MNNNILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEVNLMVLDIMMPDMD 60 Query: 61 GIELARRATE 70 G+E+ +RA + Sbjct: 61 GLEVCKRARQ 70 >gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] Length = 240 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 127 Query: 117 LL 118 +L Sbjct: 128 IL 129 >gi|163847613|ref|YP_001635657.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222525469|ref|YP_002569940.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chloroflexus sp. Y-400-fl] gi|163668902|gb|ABY35268.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449348|gb|ACM53614.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chloroflexus sp. Y-400-fl] Length = 666 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 59/114 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD +R + L +AG+ V + + +A + + + F L++ D++MP M+G++L Sbjct: 8 VLVVDDDPQLRDLCRQTLARAGFVVTTAADVTTALEALEQTVFDLVMVDLIMPGMNGLQL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 D + ++ ++G A++ + +L KPF ++L + L+ Sbjct: 68 LELIRSRDISVPILIVSGAASIEQISYAMRLGARGLLIKPFRAQELADMARELV 121 >gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 227 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + R L + L GY +S +G + EE ++L DI++P +DG E Sbjct: 2 RVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGRE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P L V+ +T V S L+KPF +L+ + L+ Sbjct: 62 VLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALV 116 >gi|331652019|ref|ZP_08353038.1| TMAO reductase sytem sensor TorS [Escherichia coli M718] gi|331050297|gb|EGI22355.1| TMAO reductase sytem sensor TorS [Escherichia coli M718] Length = 914 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|330953570|gb|EGH53830.1| response regulator receiver:ATP-binding region [Pseudomonas syringae Cit 7] Length = 783 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV+ ++G A +++ + F L+L D MP MDG E Sbjct: 661 RVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGYE 720 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R R++ P+L ++ +T A A L+KPF +LV+ +++ + I Sbjct: 721 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWIPI 779 >gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 43/70 (61%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL EDD+D+ + + L + Y V S +G A ++E F L+L D+++P+++ Sbjct: 1 MQKRILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKVN 60 Query: 61 GIELARRATE 70 G+EL + E Sbjct: 61 GMELLKHIRE 70 >gi|312882664|ref|ZP_07742401.1| chemotaxis signal transduction protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369625|gb|EFP97140.1| chemotaxis signal transduction protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 308 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 9/86 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 ++IL+A+D R+ + +A+ G+EV++ +G AYDK+ + SL+++DI Sbjct: 182 KRILIADDSTVARKQVERAILNLGFEVIAVKDGKEAYDKLIDMAAEDSIYNQISLVISDI 241 Query: 55 VMPEMDGIELARRATELDPDLKVMFI 80 MPEMDG L +PDLK +++ Sbjct: 242 EMPEMDGYTLTAEVRR-NPDLKNLYV 266 >gi|295699140|ref|YP_003607033.1| response regulator receiver protein [Burkholderia sp. CCGE1002] gi|295438353|gb|ADG17522.1| response regulator receiver protein [Burkholderia sp. CCGE1002] Length = 120 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 6/107 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL +D+ ++ L GYEV +NGA A V L++TD +MP MD Sbjct: 1 MMYSILLVDDEPEILAAWRLILESEGYEVSCASNGAEALACVVAHVPDLIVTDWMMPIMD 60 Query: 61 GIELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G EL RR + L D+ ++ T PDS+A + L KP Sbjct: 61 GAELCRRLKSMPLSVDVPILVHTAVP----PPDSDAQYCSACLLKPI 103 >gi|291529349|emb|CBK94935.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 220 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD+D+ + L GY+ +G DK+ + + LLL DI++PE++G EL Sbjct: 4 ILIVEDDNDINNLICNTLKAEGYQCERAFDGKEGADKIEQNRYDLLLLDIMLPEINGYEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D V+ I+ V + KPF + +L+ V +L Sbjct: 64 LDYVRRI-GDTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVL 116 >gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 116 >gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 220 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDDD + + +AL + GY V +G SA + E F ++ D+ +P MDG+E Sbjct: 2 RLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGLPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + RR + + V+ +T A D A +A L KPF L +L + LL Sbjct: 62 VLRRLRDSGATVPVLILTARDA---TEDRIAGLDAGADDYLVKPFDLAELKARLRALL 116 >gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 236 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GIELARR 67 G+ + +R Sbjct: 71 GLRVLQR 77 >gi|307154954|ref|YP_003890338.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985182|gb|ADN17063.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 373 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEV-VSCNNGASAYDKVREEPFSLLLTDIVMPEM-D 60 ++IL+ ED+ + R + K L K GY V S +G +A V EEP L+L DI + + D Sbjct: 4 ERILVVEDERIVARDIEKRLKKLGYIVPFSVGSGEAALKIVAEEPLDLILMDIELKGLID 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE A + + D+ ++++T +A + A + + KPF RDL Sbjct: 64 GIETAEQ-IRTNFDVPIIYLTAYADATTLERAKATEPFGYIVKPFDERDL 112 >gi|253699892|ref|YP_003021081.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774742|gb|ACT17323.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 869 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 +ILL +D++ +R + L + G+ V+ +GA A + + ++ D+ MP MDG Sbjct: 755 RILLVDDEEVIRTVASELLKELGFTPVTAGSGAEAIETFKNHRDLRAVILDLTMPGMDGE 814 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E R +DP++KV+ +GF+ + + A + KP+ L+ L EV R Sbjct: 815 ECFRELRGIDPEVKVIMSSGFSEQEVVQKFAGEELAGFIQKPYTLKTL-KEVMR 867 >gi|153807061|ref|ZP_01959729.1| hypothetical protein BACCAC_01338 [Bacteroides caccae ATCC 43185] gi|149130181|gb|EDM21391.1| hypothetical protein BACCAC_01338 [Bacteroides caccae ATCC 43185] Length = 1340 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+D++ + L K L + Y+++ ++G ++ E L+++D++MPEM G E+ Sbjct: 1089 VLLVEDNDELLQVL-KELFEPFYKIICAHDGKEGLSQIYENSPDLVISDVMMPEMTGTEM 1147 Query: 65 ARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + DL V+ +T + N + + ++KPFH + L+ N L+ Sbjct: 1148 CLQIKN-NIDLCHIPVILLTALNSTEQNIEGLSRGADDYITKPFHAQLLLARANNLI 1203 >gi|86143504|ref|ZP_01061889.1| two-component system, transcriptional regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85829951|gb|EAQ48412.1| two-component system, transcriptional regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 233 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL EDD + L + L G+EVV GA + + + F L + D+ +P+MDG Sbjct: 6 KKLLLVEDDPTLGYLLSEYLQMNGFEVVWAKTGALGLETLDQHLFDLAILDVSLPDMDGF 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV----NEVNRL 117 +A + E L +F+T A A L KP +LV N +NRL Sbjct: 66 RVASKIKENTAQLPFIFLTARALKVDVLKGFALGAVDYLKKPIDEEELVVRIKNLINRL 124 >gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 225 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +DD +R + L G+ +G A +K+ E SL + D++MP MDG E Sbjct: 3 KIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLMMPNMDGYE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ + DL V+ +T L+KPF +L+ V L+ Sbjct: 63 LCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALM 117 >gi|312884550|ref|ZP_07744254.1| autoinducer 1 sensor kinase/phosphatase luxN [Vibrio caribbenthicus ATCC BAA-2122] gi|309367862|gb|EFP95410.1| autoinducer 1 sensor kinase/phosphatase luxN [Vibrio caribbenthicus ATCC BAA-2122] Length = 845 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DD +++R L+ L + GY V+ NNG A + ++ P L+ DI MP MDG + Sbjct: 727 ILVVDDKEVQRTLVNLYLKQLGYSVILANNGKVAIEIIQSNPIDLVFMDIQMPIMDGFKA 786 Query: 65 ARRATELDPDLKVMFITG 82 A+ E P + ++ ++G Sbjct: 787 AKIIRETFPGIPIIALSG 804 >gi|307591954|ref|YP_003899545.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985599|gb|ADN17479.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1035 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ DMR ++ + L + ++V + NGA A + + ++ L+LTD++MPE+DG Sbjct: 666 RILLVDDNADMRHYVSRLLSER-WQVETAANGAIALEMIAQQLPDLVLTDVMMPELDGFG 724 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RA + + ++ ++ A + L KPF +L+ V L + Sbjct: 725 LLNTLRADPITKSIPIILLSARAGKEATIEGLEAGADDYLIKPFSTYELIARVQTQLQM 783 >gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-- 61 ++L+ EDD D+ R +++AL AGY V +G + EP+ ++ DI +P+MDG Sbjct: 2 RLLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGLS 61 Query: 62 -IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E RR P L + ++ D+ A ++KPFH+ +++ + LL Sbjct: 62 VLEAWRREGRKMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHMEEVLARIRALL 116 >gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603] gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621] gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621] gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603] gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ ED+ D++ L+K L Y V C NG A D + + L++ DI++P +D Sbjct: 1 MLMRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGID 60 Query: 61 GIELARR 67 G+++ +R Sbjct: 61 GLQVLQR 67 >gi|221197154|ref|ZP_03570201.1| CheA signal transduction histidine kinase [Burkholderia multivorans CGD2M] gi|221203826|ref|ZP_03576844.1| CheA signal transduction histidine kinase [Burkholderia multivorans CGD2] gi|221175992|gb|EEE08421.1| CheA signal transduction histidine kinase [Burkholderia multivorans CGD2] gi|221183708|gb|EEE16108.1| CheA signal transduction histidine kinase [Burkholderia multivorans CGD2M] Length = 766 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR E F L++TD+ MP MDG Sbjct: 642 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMDGWNAVRGEAFDLVVTDVDMPRMDG 701 Query: 62 IEL 64 IEL Sbjct: 702 IEL 704 >gi|218553582|ref|YP_002386495.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI1] gi|218360350|emb|CAQ97900.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli IAI1] Length = 914 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R I+ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|226497556|ref|NP_001141486.1| hypothetical protein LOC100273598 [Zea mays] gi|194704770|gb|ACF86469.1| unknown [Zea mays] Length = 629 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPE 58 M ++LLAE DD R + L K GY V + ++G A+D ++E+ F+ L+LT++ +P Sbjct: 41 MPVRVLLAEGDDSTRHVISALLRKCGYRVAAASDGVKAWDLLKEKSFNVDLVLTEVELPL 100 Query: 59 MDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 M G L E D ++ V+ ++ +V++ A L KP +L N Sbjct: 101 MSGFLLLSTIMEHDASKNIPVIMMSSHDSVSMVFKCMLKGAADFLVKPIRKNELRN 156 >gi|189464907|ref|ZP_03013692.1| hypothetical protein BACINT_01251 [Bacteroides intestinalis DSM 17393] gi|189437181|gb|EDV06166.1| hypothetical protein BACINT_01251 [Bacteroides intestinalis DSM 17393] Length = 1316 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED +M+ F++K L A Y V++ NG A + E +L+++D++MPEMDG+EL Sbjct: 1072 LLVVEDSLEMQAFIVKQL-SAKYRVLTALNGVEALKVLEEHTVNLVISDVMMPEMDGLEL 1130 >gi|170109290|ref|XP_001885852.1| predicted protein [Laccaria bicolor S238N-H82] gi|164639123|gb|EDR03396.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1165 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPEM 59 ILLAED+ ++ +K L K G+ V NG+ A D + +PF ++L D+ MP M Sbjct: 1019 ILLAEDNLVNQKLAVKILEKYGHTVEIAENGSLAVDAFKGRVAQAKPFDIILMDVSMPFM 1078 Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 G+E R+ E+ L I A A+ D A + ++KP DL+N + Sbjct: 1079 GGMEATELIRSYEMHKGLAPTPIIALTAHAMIGDRERCLQAGMDDHITKPLRRADLLNAI 1138 Query: 115 NRL 117 N+L Sbjct: 1139 NKL 1141 >gi|163740009|ref|ZP_02147414.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161386754|gb|EDQ11118.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 879 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ R + + L G++VV GA R E F L+ DI MPE+DGIE Sbjct: 612 RILVVEDNEINRLLVERMLTNLGHQVVLAPGGAEGVAAARAERFDLIFMDISMPEVDGIE 671 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R+ E L +++ +T A + A+V++KP L ++R Sbjct: 672 ATRQIREQGLAEGTQIVALTAHVAPRDHARIRDAGLAEVVTKPVSKSTLAEVISR 726 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] gi|151281395|gb|ABR89805.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ ++ + L +AG+ V NG + E + L+L D+++P++DG Sbjct: 2 KILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGWH 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + + V+F+T +V L KPF +L+ V LL +N Sbjct: 62 IVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 >gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] Length = 228 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 12/122 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 +ILL +D+ D+ + L + GY++ + NG A K ++ L++ D++MPEMDG+ Sbjct: 7 RILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHNPHLIIMDVMMPEMDGME 66 Query: 63 --ELARRATELDPDLKVMFITG----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ R+ EL+ ++ + F+T ++ VA D+ A ++KP + LV++V Sbjct: 67 ACEIIRKVPELN-NVIITFLTARNEDYSQVA-GFDAGAD---DYIAKPIKPKLLVSKVKA 121 Query: 117 LL 118 LL Sbjct: 122 LL 123 >gi|83648384|ref|YP_436819.1| CheY-like receiver protein [Hahella chejuensis KCTC 2396] gi|83636427|gb|ABC32394.1| FOG: CheY-like receiver [Hahella chejuensis KCTC 2396] Length = 130 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%) Query: 3 QKILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +KI+ ED+ D++ + ++A+G G+EVV C++G A + + +E L+L D++MPE+ Sbjct: 6 RKIVYVEDEPDIQAIAQMALEAIG--GFEVVLCSSGREALEVIPQEMPDLVLMDVMMPEL 63 Query: 60 DGIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG A R E L V F+T + + + V+ KPF L +EV RL Sbjct: 64 DGPSTLQALREVEECKHLPVAFMTAKVQKSEIDEFISLGAIGVIPKPFDPMKLSDEVKRL 123 >gi|317488286|ref|ZP_07946852.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325830707|ref|ZP_08164091.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|316912626|gb|EFV34169.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325487114|gb|EGC89557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 762 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEM 59 +++++AED++ R + L AG EV++ + GA A +++ L+ DI MPEM Sbjct: 631 RRVIVAEDNELNREIATEVLAMAGAEVLAASTGAEAVRAFERSHPGSVDLIFMDIQMPEM 690 Query: 60 DGIELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 DG E R LD D + + I A A D + + + LSKP + + ++ Sbjct: 691 DGYEATRVIRSLDRDDARSVPIVAMTANAFVEDEERSRMSGMDGHLSKPLDIHLVYATMD 750 Query: 116 RLL 118 R L Sbjct: 751 RFL 753 >gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 239 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ ++R + L GYEV +G +A K E L++ D++MP+MD Sbjct: 11 MGSRILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKA--EDMDLIILDVMMPKMD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 G + R+ E+ + ++F+T A ++ D + L+KPF +L+ V L Sbjct: 69 GFKACRQIREV-TNAPILFLT---AKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKAL 124 Query: 118 L 118 L Sbjct: 125 L 125 >gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44] gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44] Length = 229 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ + +L K LG+ G+ V + +NG E+P+ L++ D ++P +DG+ Sbjct: 2 KLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGLA 61 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A R + P V+ +T A V L KPF +LV ++ LL Sbjct: 62 VLAALRQSRQTP---VLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALL 115 >gi|293370623|ref|ZP_06617175.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292634357|gb|EFF52894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1339 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD+++R ++ K G + ++ NG A +++ ++ L+++DI+MPEMDG L Sbjct: 1085 VLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGFTL 1143 Query: 65 ARR 67 R+ Sbjct: 1144 CRK 1146 >gi|291613766|ref|YP_003523923.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] gi|291583878|gb|ADE11536.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] Length = 271 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 1/106 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LL +D++++ L++ L + GY ++ N+G + + +R+ ++++D MP M Sbjct: 1 MERTLLLVDDEENITSALVRLLRRDGYCILRANSGDAGLELLRQNEVGVIISDQRMPGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPF 105 G+E + +L PD + ++G+ + D+ N K +KP+ Sbjct: 61 GVEFLGKVRDLYPDTVRIVLSGYTELNSVTDAINRGAIYKFFTKPW 106 >gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 126 Query: 117 LL 118 +L Sbjct: 127 IL 128 >gi|255282006|ref|ZP_05346561.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM 14469] gi|255267325|gb|EET60530.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM 14469] Length = 247 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED++ + RF+ L GY V NG A + F+L+L DI++P ++ Sbjct: 7 MGAHILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLN 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ RR + P V+ +T AV ++KPF + +L+ + Sbjct: 67 GLEVLRRLQQEKPT-PVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIR 120 >gi|196231544|ref|ZP_03130402.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224397|gb|EDY18909.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 534 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D + AL + ++V +NG A + + LL+TD VMPEM+G + Sbjct: 420 RVLVADDQPIQCELISDALQRDWHKVDVASNGREALRLFEKREYDLLITDKVMPEMNGDQ 479 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA +P +V+ +TG+ V+ +P+ + + KP L +L + +L+ Sbjct: 480 LAVAVKSREPATRVIMLTGY-GVSDDPEDQSEFVDLTVGKPVSLLELRAAIAKLM 533 >gi|188991999|ref|YP_001904009.1| Histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167733759|emb|CAP51964.1| Histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 700 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q++L+ EDD +R + + L + GY+ + +A + + LL+TD+ +P ++G Sbjct: 580 QQVLVVEDDAQVRLLVTELLQELGYQAEVVADADAALPILASPQRIDLLVTDVGLPGLNG 639 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 640 RQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVL 696 >gi|153871117|ref|ZP_02000368.1| two-component response regulator [Beggiatoa sp. PS] gi|152072416|gb|EDN69631.1| two-component response regulator [Beggiatoa sp. PS] Length = 295 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ R+ L + L K GYE + NG A + V+E ++L D++MP+M GIE Sbjct: 3 KVLIVDDNLKTRKMLRRHLLKNGYETLEAENGHVALESVKENLPEVVLLDVMMPDMTGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 + ++ + P ++++I A+ + + ++KPF + +L+ + Sbjct: 63 VCQKLRQ-TPHYELVYIIMLTALTSSEQKVEGLDQGADDYITKPFDVYELMAHI 115 >gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 230 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 52/115 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD F++K L ++GY V +G K E L + DI++P +DG Sbjct: 2 KILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIMLPGLDGFT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + L V+ ++ ++V + L KPF +L+ + LL Sbjct: 62 LIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALL 116 >gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] Length = 247 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 134 Query: 117 LL 118 +L Sbjct: 135 IL 136 >gi|157961260|ref|YP_001501294.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157846260|gb|ABV86759.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1186 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 42/78 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED + L KAG++V NNG A + + L+L D+ MPEMDGIE Sbjct: 878 ILLAEDSPANQIVASALLSKAGFKVEIANNGIEALKMASAKDYGLILMDMRMPEMDGIEA 937 Query: 65 ARRATELDPDLKVMFITG 82 ++ + +P V+ +T Sbjct: 938 TQKILQRNPSQVVIAMTA 955 >gi|146306000|ref|YP_001186465.1| two-component response regulator PilR [Pseudomonas mendocina ymp] gi|145574201|gb|ABP83733.1| Two-component response regulator PilR [Pseudomonas mendocina ymp] Length = 446 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+ L+ +D+ D+R L LG+ + S N A + + EPF L LTD+ +P+ G Sbjct: 3 RQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLLT 119 ++L + + P + V IT + +L+ NA K ++KP L L V L Sbjct: 63 LDLVQHIQQRHPQVPVAMITAYG--SLDTAINALKAGAFDFVTKPVDLGRLRELVATALR 120 Query: 120 IKN 122 I++ Sbjct: 121 IRS 123 >gi|114766172|ref|ZP_01445172.1| C4-dicarboxylate transport transcriptional regulatory protein [Pelagibaca bermudensis HTCC2601] gi|114541543|gb|EAU44586.1| C4-dicarboxylate transport transcriptional regulatory protein [Roseovarius sp. HTCC2601] Length = 841 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 61/120 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++LL +DD +R L + L A ++ ++ + A D++ + ++++DI MP DG Sbjct: 4 RRVLLVDDDAAVREALGQTLELAEFDAITAGSFVEAKDRIAAQFEGVIVSDIRMPGRDGF 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L A E D +L V+ +TG + + + + L KP +DL++ + R L + Sbjct: 64 HLLDYAHEQDAELPVILLTGEGDIPMAVRAMSAGAFDFLEKPCAPQDLISVIERALRTRG 123 >gi|21231108|ref|NP_637025.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768884|ref|YP_243646.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112742|gb|AAM40949.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574216|gb|AAY49626.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] Length = 700 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q++L+ EDD +R + + L + GY+ + +A + + LL+TD+ +P ++G Sbjct: 580 QQVLVVEDDAQVRLLVTELLQELGYQAEVVADADAALPILASPQRIDLLVTDVGLPGLNG 639 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 640 RQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVL 696 >gi|115359438|ref|YP_776576.1| two component, sigma54 specific, Fis family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284726|gb|ABI90242.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia ambifaria AMMD] Length = 453 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 59/113 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++R + +A+ AG+ V + +GA A V ++++D+ MP +DG++ Sbjct: 6 RVLVVEDDENVRIGVEQAVALAGFPVDAFASGADALAHVAPGAPIVIVSDVRMPGIDGLQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R +D + V+ I+G A ++ + + KPF + V R Sbjct: 66 LLERVVAVDAQIPVVLISGHADISTAVGAMHDGAYDFIEKPFSSDVIAGRVAR 118 >gi|332885780|gb|EGK06026.1| hypothetical protein HMPREF9456_02290 [Dysgonomonas mossii DSM 22836] Length = 1335 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ +D++++R FL + LG+ ++V++ +G + L+++D++MP MDG Sbjct: 1076 NYKILIIDDEEEIRDFLSQELGEL-FKVITAVDGVDGLQVAIDRLPDLIISDVMMPNMDG 1134 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L +R + + ++ +T A LSKPF++ +L+ +N L+ Sbjct: 1135 LNLLKRLKNNNNVSHIPIILLTSKAEYQDRIQGLDRGADAYLSKPFNIEELIVTINNLI 1193 >gi|332307083|ref|YP_004434934.1| two component, sigma54 specific, transcriptional regulator, Fis family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174412|gb|AEE23666.1| two component, sigma54 specific, transcriptional regulator, Fis family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 449 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +ILL +DD+ + R + L GY V S G A + + F +L+D+ MP +D Sbjct: 8 LKPQILLVDDDESLLRLMAIRLEGEGYSVQSAEGGKEALRLMNTQNFDAVLSDLRMPGLD 67 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLV 111 G+ L L DL V+ +T + ++ L+KP LRDL+ Sbjct: 68 GLSLFEEIMSLGKDLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDLL 121 >gi|332162345|ref|YP_004298922.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666575|gb|ADZ43219.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860455|emb|CBX70762.1| sensor kinase protein rcsC [Yersinia enterocolitica W22703] Length = 932 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 47/106 (44%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG L Sbjct: 812 ILVVDDHPINRRLLADQLTALGYRVITANDGLDALAVLNTNSVDIVLTDVNMPNMDGYRL 871 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R EL+ + V+ +T A LSKP L L Sbjct: 872 THRLRELNHNFPVIGVTANALAESKLRCIEAGMDNCLSKPVTLDTL 917 >gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 646 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 525 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 584 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 585 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 627 >gi|331653801|ref|ZP_08354802.1| sensor protein EvgS [Escherichia coli M718] gi|331048650|gb|EGI20726.1| sensor protein EvgS [Escherichia coli M718] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|307297184|ref|ZP_07576997.1| GAF sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877408|gb|EFN08639.1| GAF sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 587 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 8/104 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61 K+LL +D+D +R + L GY VV + SA + + P +L+TD +MP M G Sbjct: 455 KVLLVDDNDLVRSSTREMLVDMGYVVVDTDRAESALRIIESGDRP-DILVTDHIMPGMTG 513 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 +ELA R PD+ ++ I+G+ V D AP + LSKPF Sbjct: 514 VELALRLRVDHPDIALLIISGYEGV----DLIAPDITR-LSKPF 552 >gi|294146648|ref|YP_003559314.1| LuxR-family response regulator [Sphingobium japonicum UT26S] gi|292677065|dbj|BAI98582.1| LuxR-family response regulator [Sphingobium japonicum UT26S] Length = 199 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 46/106 (43%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 +D+D +R L GY V + G EP ++ D+ MPEMDGIE+ RR Sbjct: 2 DDEDSVRAATAFLLELEGYTVRTWQRGTHFLAAAANEPLGCVIMDLRMPEMDGIEVQRRL 61 Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E + ++ +TG +A + L KPF L+ V Sbjct: 62 NEAELYFPIIMLTGHGDIASTVTAMKMGAVDFLVKPFERETLLRAV 107 >gi|291535245|emb|CBL08357.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Roseburia intestinalis M50/1] Length = 550 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIK--ALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KI LAED+ MR + A + G+E V ++G AY +++ +L+TDI MP MD Sbjct: 9 KIFLAEDEIVMREGIRNNIAWQEEGFEFVGEASDGELAYPMIQKLKPDILITDIRMPFMD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+EL+R + PD ++ ++G+ ++ + L KP L+ + R+ Sbjct: 69 GLELSRIVKQELPDTSILILSGYGEFDYAKEAISIGVEDYLLKPVTSAQLLEAIRRI 125 >gi|218261874|ref|ZP_03476559.1| hypothetical protein PRABACTJOHN_02230 [Parabacteroides johnsonii DSM 18315] gi|218223722|gb|EEC96372.1| hypothetical protein PRABACTJOHN_02230 [Parabacteroides johnsonii DSM 18315] Length = 227 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + + L +EV+ NG + +E +++TDI+MP++DG Sbjct: 5 RVLLVEDEPTLAMIIKDTLDGEEFEVILAANGEEGLSRYKETKPDIIVTDIMMPKIDGFT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + D + V+F++ +A + L KPF + +L+ + LL Sbjct: 65 MIRHIRKTDQQIPVLFLSARSAANDVVEGFELGGNDYLKKPFGMAELIIRIKALL 119 >gi|254446098|ref|ZP_05059574.1| hypothetical protein VDG1235_4347 [Verrucomicrobiae bacterium DG1235] gi|198260406|gb|EDY84714.1| hypothetical protein VDG1235_4347 [Verrucomicrobiae bacterium DG1235] Length = 140 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPE 58 NQK LLAEDD +R + L GY+V+ +NG A + + + L++TD+VMP+ Sbjct: 13 NQKALLAEDDSLIRELVSTYLRTLGYDVLEASNGRDAIELLNDGHTGRLDLIVTDLVMPK 72 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + ++A E + + ++G ++ + K ++ + KPF D +++ L Sbjct: 73 ASGETIIKQARERGVCNRFLVMSGNPIDPMSHATAPSKGSEYIEKPFSFGDFEAKLHSLE 132 Query: 119 T 119 T Sbjct: 133 T 133 >gi|193212167|ref|YP_001998120.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085644|gb|ACF10920.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 648 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 45/81 (55%) Query: 41 KVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV 100 + E LL+TD+V+P M+GIEL++ + +P LK +F++ A +N Sbjct: 564 ETHEYRIDLLVTDVVLPTMNGIELSQELQKKNPALKCLFMSAHAPENVNGQKKLRDGVDF 623 Query: 101 LSKPFHLRDLVNEVNRLLTIK 121 + KPF + D + ++R+L+ K Sbjct: 624 IQKPFGIDDFLRAIDRVLSSK 644 >gi|167585340|ref|ZP_02377728.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Burkholderia ubonensis Bu] Length = 450 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD +RR +++L AG++V + +A + + ++++DI +P G++ Sbjct: 6 QVIYIEDDALVRRASVQSLQLAGFDVTGFESAEAAEKAIVADAAGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 66 LLAQCRERVPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFAAERLIETVRRAL 120 >gi|149923735|ref|ZP_01912129.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149815419|gb|EDM74959.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 686 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDG 61 ++L+A+D+ +RR L EV +NGA A + E SL ++ D VMP++ G Sbjct: 554 RVLIADDEHGVRRTLRGFFRSHQCEVFEASNGAEALAILDREGASLDLVVLDTVMPKLSG 613 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + R PD+ V+ I+G+ D LSKPF LR L V LT Sbjct: 614 ADALRALRTAWPDMPVLMISGYLRDVALHDLQDLGIGAFLSKPFRLRQLAMAVEAALT 671 >gi|152987972|ref|YP_001346817.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PA7] gi|150963130|gb|ABR85155.1| probable chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PA7] Length = 764 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 641 KRILVVDDSLTVRELERKLLLGRGYDVAVAVDGMDGWNALRSEHFDLLITDIDMPRMDGI 700 Query: 63 E---LARRATELDPDLKVMFIT 81 E L RR + L L VM ++ Sbjct: 701 ELVTLVRRDSRLQ-SLPVMVVS 721 >gi|86158032|ref|YP_464817.1| two component Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197122660|ref|YP_002134611.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917443|ref|YP_002492747.1| two component transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|85774543|gb|ABC81380.1| two component transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] gi|196172509|gb|ACG73482.1| two component transcriptional regulator, Fis family [Anaeromyxobacter sp. K] gi|219955297|gb|ACL65681.1| two component transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 185 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD+ +R L A+ GYEV + + A + + + + D+ MP G+E+ Sbjct: 16 ILLVDDDEVLRERLATAIRARGYEVRTAGSAEEAMREATRDSPEMAVLDLRMPGGSGLEI 75 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R DP +V+ +TG+ ++A ++ L KP +++ +N T K Sbjct: 76 LRELRRQDPSTRVLMLTGYGSIATAVEAVREGAVGYLPKPADADEILAALNGTNTAKE 133 >gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 223 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED + +R+ L+ LG AGY V + +G E+ + L++ DI++P M+G E Sbjct: 2 RLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R L D V+ +T V L S A L KPF +L+ + LL Sbjct: 62 LLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGAD---DYLVKPFDFDELLARIEALL 116 >gi|37524254|ref|NP_927598.1| nitrogen regulation protein NR(I) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783677|emb|CAE12530.1| Nitrogen regulation protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 490 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 57/116 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +DD +R L +AL AG E S + SA + + +L++DI MP M+G+ Sbjct: 5 KIWIVDDDSSIRWVLERALSNAGMECTSFADADSALTALAQNTPDVLISDIRMPGMNGLN 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + +P L V+ +T + + ++ L KPF + + V + R L+ Sbjct: 65 LLNNIKQSNPLLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDEAVALLERALS 120 >gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 6/110 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD ++ R L++AL AGY V +G EP+ ++ DI +P++DGI Sbjct: 2 RLLVVEDDPELNRQLVEALSDAGYAVDRAYDGEEGQYLGETEPYDAIVLDIGLPKLDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E RRA ++ P L + ++ D+ A ++KPFH+ ++ Sbjct: 62 VLESWRRAGKVTPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHMEEV 108 >gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] Length = 1222 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 4 KILLAEDDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILL DD+ + F+ + L KAG E+ + NG A KV+E P+ ++L DI MP+MDGI Sbjct: 969 KILLV-DDNAINLFVASEILRKAGCEIDTAGNGLEAIQKVKENPYRMVLMDIQMPQMDGI 1027 Query: 63 ELARRATELD 72 E +L+ Sbjct: 1028 EATAEIRKLN 1037 >gi|331016325|gb|EGH96381.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 793 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 670 KRVLVVDDSLTVRELERKLLVGRGYDVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 729 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 730 ELVTLLRRDTRLQ-SLPVMVVS 750 >gi|330943111|gb|EGH45537.1| response regulator receiver [Pseudomonas syringae pv. pisi str. 1704B] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + IL+ EDD +R ++ L + Y+V+ + SA V ++ LL+TD +P+M Sbjct: 6 RTILVVEDDAIVRMLIVDVLEELEYKVLEAEDATSALTFVADDSNHIDLLMTDQGLPDMK 65 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G LA++ EL P L V+F +G++ Sbjct: 66 GTALAKKVIELRPQLPVLFASGYS 89 >gi|330995931|ref|ZP_08319826.1| transcriptional regulatory protein RprY [Paraprevotella xylaniphila YIT 11841] gi|332877542|ref|ZP_08445289.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|329574270|gb|EGG55845.1| transcriptional regulatory protein RprY [Paraprevotella xylaniphila YIT 11841] gi|332684648|gb|EGJ57498.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 234 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ + L + L GYE +G + Y + + + + D++MP+ DG + Sbjct: 6 RILLCEDDESLGMLLREYLQAKGYEAELFPDGDAGYKAFLKNRYEMCVLDVMMPKKDGFQ 65 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LA+ +++ ++ ++F+T F + D ++KPF + +LV + Sbjct: 66 LAQEIRQVNAEIPIIFLTAKNLKEDIFDGFKIGADD-------YITKPFSMEELVFRMEA 118 Query: 117 LL 118 +L Sbjct: 119 IL 120 >gi|330810305|ref|YP_004354767.1| Response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378413|gb|AEA69763.1| putative Response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 122 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + AL AGY+V+ ++G A K+ + L+++D+ MP MD Sbjct: 1 MAKSVLVVDDSASVRQVVGIALKSAGYDVIEASDGKDALGKLNGQKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + +L ++ +T + + + A + KPF ++ V++L+ Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKQEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 >gi|330807735|ref|YP_004352197.1| histidine kinase, CheA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375843|gb|AEA67193.1| putative Histidine kinase, CheA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 754 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 631 KRILVVDDSLTVRELQRKLLLNRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDGI 690 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR L L VM ++ Sbjct: 691 ELVSLLRRDNRLQ-SLPVMVVS 711 >gi|319783843|ref|YP_004143319.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169731|gb|ADV13269.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 123 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +K+++ ED++ +M+ F LI+A +GYE V NG A D R+ L+L DI +P Sbjct: 1 MPKKVMIVEDNELNMKLFRDLIEA---SGYETVRTRNGLEALDLARQHRPDLILMDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 E+ G+E+ + E D +L V+ + A A+ D + +SKP + + + Sbjct: 58 EVSGLEVTKWLKE-DDELHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETI 116 Query: 115 NRLL 118 L Sbjct: 117 KSYL 120 >gi|300928534|ref|ZP_07144059.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300463465|gb|EFK26958.1| response regulator receiver domain protein [Escherichia coli MS 187-1] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ +D+D +RR L L + GY V NG A +K E+ + +L DI+MPE DG Sbjct: 4 NISVLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDG 63 Query: 62 IELA 65 +E+ Sbjct: 64 LEVC 67 >gi|293604962|ref|ZP_06687359.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292816790|gb|EFF75874.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|317403812|gb|EFV84290.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 208 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ + + +DD+ +R L L GY V + +G S + +L+ D+ MP M Sbjct: 6 LSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGESFLEDYDASQIGVLIADVRMPGMS 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL + + L ++FITG V + + L KPF+ DL V R+L Sbjct: 66 GLELQEQLIARNAPLPIVFITGHGDVPMAVSTMKKGAVDFLEKPFNESDLREIVARML 123 >gi|266622538|ref|ZP_06115473.1| DNA-binding response regulator [Clostridium hathewayi DSM 13479] gi|288865748|gb|EFC98046.1| DNA-binding response regulator [Clostridium hathewayi DSM 13479] Length = 269 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%) Query: 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVA 87 E+++ NG A + + E +++TDI MPE+DG EL RR E ++ V+ +T A Sbjct: 42 EILTAENGREALELLEERVPDIIITDIRMPEIDGTELVRRIREQGYEMPVIILTALTDFA 101 Query: 88 LNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + D + + KPF + +++ E Sbjct: 102 IARDLIHYQIQNYIVKPFSIEEILKETE 129 >gi|326201098|ref|ZP_08190970.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988666|gb|EGD49490.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD D+ R + L K GY V S +GA+A + + F L++ DI++P++ G E Sbjct: 6 KILIVEDDRDINRLIADNLVKEGYCVTSTYDGAAAIEYFEADKFQLVILDIMLPKIGGYE 65 Query: 64 LARRATE 70 + ++ E Sbjct: 66 VLQKIRE 72 >gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 224 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A +K E P +L+ D+++P+ DG E Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEGP-DVLILDVMLPDTDGYE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 62 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 114 Query: 117 L 117 + Sbjct: 115 M 115 >gi|288573149|ref|ZP_06391506.1| response regulator receiver protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568890|gb|EFC90447.1| response regulator receiver protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 132 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +DD + L+ L GYEV S N+G SAY+ +R + + D+ +P M G Sbjct: 3 RVMVVDDDLSVCATLVAFLEDCGYEVYSFNSGESAYEWIRTNRVDVAVVDLRLPAMSGDR 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAP--KNAKVLSKPF-HLRDLVNEVNRL 117 L EL PDL + TG + +P S +N V KP L L++E+ L Sbjct: 63 LILNMRELLPDLPCVIYTG--SPDFDPGSQYVELENVPVFRKPLVDLTVLLDEIEAL 117 >gi|260587060|ref|ZP_05852973.1| two-component response regulator [Blautia hansenii DSM 20583] gi|331082832|ref|ZP_08331954.1| hypothetical protein HMPREF0992_00878 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542550|gb|EEX23119.1| two-component response regulator [Blautia hansenii DSM 20583] gi|330400161|gb|EGG79810.1| hypothetical protein HMPREF0992_00878 [Lachnospiraceae bacterium 6_1_63FAA] Length = 536 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +LL +D++D+ + ++K + G+ V+ NNG A + V E +++TDI MP MDG Sbjct: 6 VLLVDDEEDVIQVIMKKINWEGLGFSVIGYANNGVKALEMVEEFQPDVVMTDINMPYMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +ELA P K++ TGF ++ + + + KP + +L N +L Sbjct: 66 MELAGHIKADYPGTKLLLFTGFDEFEYAKEAVHLEVEEYILKPVNSIELTNVFTQL 121 >gi|255608346|ref|XP_002538887.1| two-component sensor histidine kinase bacteria, putative [Ricinus communis] gi|223509966|gb|EEF23498.1| two-component sensor histidine kinase bacteria, putative [Ricinus communis] Length = 168 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ +++L EDD +R +AL AG+ V ++ A + ++ ++L+TD+ +P M Sbjct: 1 MNEIEVILVEDDPTVREGSAQALDLAGFTVRDFDSAEPARELLQAHCRAVLVTDVRLPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G++L +DP+L V+ +TG +++ + + KP+ L V R Sbjct: 61 SGLDLLAAVRAVDPELPVILVTGHGDISMAVQAMHDGAYDFIEKPYSSEQLAEVVRR 117 >gi|210622664|ref|ZP_03293304.1| hypothetical protein CLOHIR_01252 [Clostridium hiranonis DSM 13275] gi|210154102|gb|EEA85108.1| hypothetical protein CLOHIR_01252 [Clostridium hiranonis DSM 13275] Length = 162 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEM 59 M +KIL+ ED+ +R F+ L + GY+++ G A +K+ E+ ++ L D+++P+M Sbjct: 1 MKEKILILEDEIGIRSFVSINLKREGYDIIEAGTGREAIEKIDSEDGIAIALLDVMLPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ + + ++ +T + + + KPF +++L+ V+ L+ Sbjct: 61 SGIEVCKYIRAKYDQVGIIMLTAKSQEEDKIEGFMSGADDYMVKPFSIKELMVRVSALI 119 >gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 236 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +IL+ EDD + F++ L ++G+ V C +G + + + D+++P++DG Sbjct: 14 DMRILVVEDDAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVMLPKLDG 73 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L +R + + V+F++ A+V L+KPF +L + L+ Sbjct: 74 LSLVQRLRKEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALI 130 >gi|162451536|ref|YP_001613903.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161162118|emb|CAN93423.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 457 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +M + + G+E + A + E F L++TD+ MPE+DGIE Sbjct: 6 RVLVVDDELEMAKLVADIARDMGHEPTALTAPLLALPLLEEREFDLIVTDVRMPEIDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R DP ++ +T F ++ + L KPF DL + R L Sbjct: 66 LIERIARFDPRTAIIAMTAFGSIDTAVRAMRAGAFDYLPKPFQPADLALRMERAL 120 >gi|154493654|ref|ZP_02032974.1| hypothetical protein PARMER_02994 [Parabacteroides merdae ATCC 43184] gi|154086864|gb|EDN85909.1| hypothetical protein PARMER_02994 [Parabacteroides merdae ATCC 43184] Length = 910 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ EDD D++ +L L K + V+ +NG A + + E S++++D++MPEM+G Sbjct: 658 NYTVLVVEDDLDIQSYLQAEL-KQNFRVLVADNGVKALEVLMSEEVSMVISDVMMPEMNG 716 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +L R+ + L VM +T + A + KPF++ EV +L Sbjct: 717 FDLCRKIKSDIVLSHLPVMLLTALSDDKQQMYGAASGADAYIQKPFNI-----EVVKLRI 771 Query: 120 IK 121 IK Sbjct: 772 IK 773 >gi|163853028|ref|YP_001641071.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163664633|gb|ABY32000.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 684 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ F + L + G+ V N A A ++ ++ F ++ TD++MP M+G+ Sbjct: 561 VLVVEDNVEVGTFATQTLAELGFGTVWAANAAEALAELAKDADSFDVVFTDVMMPGMNGV 620 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +LAR L PDL V+ +G++ V +N ++L KP+ + L Sbjct: 621 DLAREIQRLHPDLPVVLTSGYSHVLARTGTNG---FELLQKPYSVEQL 665 >gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ +D+D +RR L L + GY V NG A +K E+ + +L DI+MPE DG Sbjct: 6 NISVLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDG 65 Query: 62 IELA 65 +E+ Sbjct: 66 LEVC 69 >gi|109897924|ref|YP_661179.1| two component, sigma54 specific, Fis family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700205|gb|ABG40125.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudoalteromonas atlantica T6c] Length = 449 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +ILL +DD+ + R + L GY V S G A + + F +L+D+ MP +D Sbjct: 8 LKPQILLVDDDESLLRLMAIRLEGEGYSVQSAEGGKEALRLMNTQNFDAVLSDLRMPGLD 67 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLV 111 G+ L L DL V+ +T + ++ L+KP LRDL+ Sbjct: 68 GLSLFEEIMSLGKDLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDLL 121 >gi|332666803|ref|YP_004449591.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335617|gb|AEE52718.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1374 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++++R FL + L A Y + +G + KV+ E L+++DI+MP MDGIE Sbjct: 1124 ILIVDDNEELRGFLREVL-SAKYHISEAADGQEGHQKVKAEMPDLIISDIMMPVMDGIEF 1182 Query: 65 ARRA-TELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ +LD + M +T AV + +KP + L Sbjct: 1183 CKKVKADLDTAHIPFMLLTAKDAVESQIEGTGSGANYYFAKPISIELL 1230 >gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1311 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 7/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+D+ R +L + L + + V+ ++G ++ +++TD++MP+MDGIEL Sbjct: 1066 ILLVEDNDEFRHYLQEELSRH-FTVLEASDGEEGETVALQQKPDIIITDLMMPKMDGIEL 1124 Query: 65 ARRAT---ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 +R E+ + V+ +T A+V N + + A ++KPF L ++ LL Sbjct: 1125 CKRIKHNIEVS-HIPVILLTASASVE-NEERGYKEGADAYMTKPFKWEILTARIHNLL 1180 >gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1637 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV----RE-EPFSLLLTDIV 55 +N ++L+A+D D+R L KAG EV NG A D V R+ +PF L L D+ Sbjct: 1513 LNARVLIADDMRDVRFVAQHFLKKAGCEVEVAENGRQAVDMVVAASRDGKPFELCLMDMQ 1572 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MPE+DG+ R + +L V+ +T A + + LSKP +VN Sbjct: 1573 MPELDGLGAVRELRQRGIELPVIALTADAMKGTRRRLISEGFDEYLSKPL-------KVN 1625 Query: 116 RLLTI 120 RLL I Sbjct: 1626 RLLRI 1630 >gi|311693945|gb|ADP96818.1| multi-sensor signal transduction histidine kinase [marine bacterium HP15] Length = 525 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ + L + L GY ++ N G A D ++L DI+MPEMDG E+ Sbjct: 13 VLLVDDNPQNLKVLYETLKDKGYRLLIANEGEKALDLAHRHQPEVILLDIMMPEMDGYEV 72 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R A D V+F++ + + A +SKPF ++++ V Sbjct: 73 CERLKAAPQTADCAVVFLSALDDLQAKVKGFSLGGADYISKPFQSQEVIARV 124 >gi|311106527|ref|YP_003979380.1| nitrogen regulation protein NR(I) [Achromobacter xylosoxidans A8] gi|310761216|gb|ADP16665.1| nitrogen regulation protein NR(I) [Achromobacter xylosoxidans A8] Length = 502 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFS----LLLTDIVMP 57 + + + +DD +R L KAL +AG S + A D + R++P + L++DI MP Sbjct: 2 KPVWIVDDDQAIRWVLEKALARAGVPTRSFSQSADVLDALSRDKPAADTPAALVSDIRMP 61 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +G+EL R+ E P L V+ +T FA + + L+KPF + + V + R Sbjct: 62 GGNGLELLRQLKERHPGLPVIVMTAFADLDSTVSAFQGGAFDYLAKPFDVNEAVALIQRA 121 Query: 118 L 118 + Sbjct: 122 M 122 >gi|254562963|ref|YP_003070058.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254270241|emb|CAX26235.1| putative hybrid histidine kinase: Domains: GAF, Histidine Kinase, ATPase and CheY-like [Methylobacterium extorquens DM4] Length = 691 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ F + L + G+ V N A A ++ ++ F ++ TD++MP M+G+ Sbjct: 568 VLVVEDNVEVGTFATQTLAELGFGTVWAANAAEALAELAKDADRFDVVFTDVMMPGMNGV 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +LAR L PDL V+ +G++ V +N ++L KP+ + L Sbjct: 628 DLAREIQRLHPDLPVVLTSGYSHVLARTGTNG---FELLQKPYSVEQL 672 >gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV+ +G A +K +E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08] gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07] gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08] gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07] Length = 223 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ M+ +++ + K GY V+ ++G A ++ L++ D++MP +DG Sbjct: 3 KILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVMMPYLDGFS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + E+ ++ ++ +T ++KPF + L+ +VN LL Sbjct: 63 VCRVSREM-TNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALL 116 >gi|253701695|ref|YP_003022884.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251776545|gb|ACT19126.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 491 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + L L K GY+V + G A ++ E L+L D+ +P+++G+E Sbjct: 6 RILVVDDEKLISWSLATMLKKEGYDVETAATGNEAINRFAEFRPQLVLLDVCLPDVNGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L +R ++ DL V+ IT +A + KPF+L + + VN+ Sbjct: 66 LLKRFKSVNEDLYVIMITAYAHADSAVQALQEGAEDYFGKPFNLDAVKHVVNK 118 >gi|163759327|ref|ZP_02166413.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283731|gb|EDQ34016.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 123 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 10/124 (8%) Query: 1 MNQKILLAEDDD-DMRRF--LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M +++++ ED++ +M+ F LI+A +GY+ V NG A D R+ L+L DI +P Sbjct: 1 MTKQVMIVEDNELNMKLFRDLIEA---SGYKTVQTRNGMDAMDLARQHRPDLILMDIQLP 57 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 E+ G+E+ + + D DL V+ + A A+ D + +SKP + + + Sbjct: 58 EVSGLEVTKWLKQ-DDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPKFIETI 116 Query: 115 NRLL 118 L Sbjct: 117 KSFL 120 >gi|160892089|ref|ZP_02073092.1| hypothetical protein BACUNI_04552 [Bacteroides uniformis ATCC 8492] gi|317480521|ref|ZP_07939613.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156858567|gb|EDO51998.1| hypothetical protein BACUNI_04552 [Bacteroides uniformis ATCC 8492] gi|316903313|gb|EFV25175.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 225 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ D+R + +L K + V + + SA DK+ + + +L DI++P G++ Sbjct: 2 KILIVEDEQDLRETIRTSLLKEKFVVETAADYFSALDKINDYDYDCILLDIMLPGGSGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R +L V+ I+ ++ D L+KPFHL +L V L+ Sbjct: 62 LLRELKQLHRSDSVLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVKSLI 116 >gi|120434408|ref|YP_860117.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117576558|emb|CAL65027.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 1352 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ IL+ ED+ ++R++ I L K V+ NG A +++ + L+++DI+MP MDG Sbjct: 1105 DESILIVEDNKEIRKY-ISGLLKPYCRVIEVENGKEALEEITQNQPDLIISDIMMPIMDG 1163 Query: 62 IELARR---ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L R+ +TE + V+ +T A + ++KPF+ L+ + LL Sbjct: 1164 VSLTRKLKTSTETS-HIPVILLTARATSIQRMEGYETGADAYITKPFNEEMLMIRIKNLL 1222 Query: 119 TIKN 122 +N Sbjct: 1223 RNRN 1226 >gi|111221291|ref|YP_712085.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111148823|emb|CAJ60501.1| Putative Transcriptional regulatory protein [Frankia alni ACN14a] Length = 250 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 2/108 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 ++L+ +DD +R L ++L GYEV + +GA A D V R++P +++ D++MP +DG+ Sbjct: 9 RVLVVDDDAAVRESLERSLRFEGYEVTTAVDGADALDAVCRDQP-DIVVLDVMMPRIDGL 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 E R+ D+ V+ +T +A L KPF L +L Sbjct: 68 ETCRQLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 115 >gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2] gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2] Length = 930 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D + L + G V +C++G SA D ++ PF L+ DI MP MDG E Sbjct: 673 VLLVDDHPGNLKLARVFLEELGVTVTACDSGQSALDTFQKHPFDLVFMDIQMPGMDGKET 732 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKP 104 ++R +PD I A AL+ + ++ + LSKP Sbjct: 733 SKRMRAAEPDGTHTPIVALTAHALDSERRELLDSGLDDYLSKP 775 >gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli] Length = 933 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRTRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|85375644|ref|YP_459706.1| two-component response regulator [Erythrobacter litoralis HTCC2594] gi|84788727|gb|ABC64909.1| two-component response regulator [Erythrobacter litoralis HTCC2594] Length = 122 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED+D R+ L G+EV+ C +G + RE L + DI +P + Sbjct: 1 MAKRILVVEDNDLNRKLFCDVLRAKGHEVLPCADGNAVLGAAREFSPDLTIMDIQLPNIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G++L +A + DP L + + A A D ++A LSKP + + V+ L Sbjct: 61 GVDLI-QAMKQDPTLAAIPVLAVTAYAGKGDEEKIRDAGAADYLSKPVSIGPFMAAVDAL 119 Query: 118 LT 119 + Sbjct: 120 IA 121 >gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1166 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 ++LL ED+ + I+ LG AG V +G SA D + E PF L+L DI M +MDG Sbjct: 829 RVLLVEDNAINQEIAIELLGYAGVAVTPAASGQSALDLLNSEAPFDLVLMDIQMSDMDGY 888 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPD 91 R+ + DP K + + A A+ D Sbjct: 889 ATTRQLRQ-DPRFKTLPVVAMTAHAMVSD 916 >gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1066 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED++ + + L + G+ V+ NG A D + + F L+ D MPEMDGIE Sbjct: 939 RILVAEDNEINQLVMRDWLDEMGHMVICVPNGRKAIDLLSQGRFDLVFMDAQMPEMDGIE 998 Query: 64 ---LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + RR+ +DP + ++ +T +A A LSKP +L Sbjct: 999 ATRIIRRSPPQGVDPAIPIVALTAYALKGDRERFLAAGMDDYLSKPLDFEEL 1050 >gi|330964099|gb|EGH64359.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 787 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 664 KRVLVVDDSLTVRELERKLLVGRGYDVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 723 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 724 ELVTLLRRDTRLQ-SLPVMVVS 744 >gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] Length = 228 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 116 >gi|320107741|ref|YP_004183331.1| Fis family two component sigma54 specific transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319926262|gb|ADV83337.1| two component, sigma54 specific, transcriptional regulator, Fis family [Terriglobus saanensis SP1PR4] Length = 475 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 45/83 (54%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ + R L + + GY + +G D+V + +++TD+ MP MDG+E Sbjct: 9 KVLVVEDEPNARTGLAELIASWGYRTNTAADGVEGLDRVHQWSPDIVVTDMKMPRMDGLE 68 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L R TEL + + +T ++ Sbjct: 69 LLGRITELPEMIATVVLTAQGSI 91 >gi|307311026|ref|ZP_07590670.1| Hpt sensor hybrid histidine kinase [Escherichia coli W] gi|306908532|gb|EFN39029.1| Hpt sensor hybrid histidine kinase [Escherichia coli W] gi|315061705|gb|ADT76032.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli W] gi|323377714|gb|ADX49982.1| Hpt sensor hybrid histidine kinase [Escherichia coli KO11] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB [Candidatus Nitrospira defluvii] gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB [Candidatus Nitrospira defluvii] Length = 238 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++KIL+ ED+ D+ + + L K G+ VS G +V+ E L++ D+++PE+DG Sbjct: 8 HKKILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPELDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +E+ +R L+ + ++ I A A D+ ++KPF + LV V LL Sbjct: 68 LEVCKR-IRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALL 126 >gi|300312322|ref|YP_003776414.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075107|gb|ADJ64506.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 775 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D +R K L GY+V +G ++ VR + F L++TDI MP MDGI Sbjct: 653 KKVLVVDDSLTVRELERKLLTNRGYQVTVAVDGMDGWNAVRADSFDLVITDIDMPRMDGI 712 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL R A L L VM ++ Sbjct: 713 ELVSLIRGAANLQ-SLPVMIVS 733 >gi|297570452|ref|YP_003691796.1| response regulator receiver protein [Desulfurivibrio alkaliphilus AHT2] gi|296926367|gb|ADH87177.1| response regulator receiver protein [Desulfurivibrio alkaliphilus AHT2] Length = 127 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 60/112 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D R L + L G+ V + A + E+P +++ D+++P++DG++ Sbjct: 6 QLLIVDDEPDFREALAQRLRFRGFGVRTAAGCHQALAALAEQPVEVVILDVMLPDVDGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R + P+ V+ ++G A+++ A ++ KP L +LV +++ Sbjct: 66 CLVRIKKRWPNTGVIMLSGHASISAGMQGIAAGASEYCLKPVELGELVEKIH 117 >gi|257790999|ref|YP_003181605.1| histidine kinase [Eggerthella lenta DSM 2243] gi|257474896|gb|ACV55216.1| histidine kinase [Eggerthella lenta DSM 2243] Length = 762 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEM 59 +++++AED++ R + L AG EV++ + GA A +++ L+ DI MPEM Sbjct: 631 RRVIVAEDNELNREIATEVLAMAGAEVLAASTGAEAVRAFERSHPGSVDLIFMDIQMPEM 690 Query: 60 DGIELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 DG E R LD D + + I A A D + + + LSKP + + ++ Sbjct: 691 DGYEATRVIRSLDRDDARSVPIVAMTANAFVEDEERSRMSGMDGHLSKPLDIHLVYATMD 750 Query: 116 RLL 118 R L Sbjct: 751 RFL 753 >gi|218694528|ref|YP_002402195.1| hybrid sensory histidine kinase TorS [Escherichia coli 55989] gi|218351260|emb|CAU96964.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli 55989] Length = 914 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAASLVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|213969080|ref|ZP_03397219.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301384026|ref|ZP_07232444.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058732|ref|ZP_07250273.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302131694|ref|ZP_07257684.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926078|gb|EEB59634.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 793 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 670 KRVLVVDDSLTVRELERKLLVGRGYDVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 729 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 730 ELVTLLRRDTRLQ-SLPVMVVS 750 >gi|193069738|ref|ZP_03050689.1| sensor histidine kinase/response regulator EvgS [Escherichia coli E110019] gi|192956940|gb|EDV87392.1| sensor histidine kinase/response regulator EvgS [Escherichia coli E110019] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|187734021|ref|YP_001881179.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella boydii CDC 3083-94] gi|187431013|gb|ACD10287.1| sensor histidine kinase/response regulator EvgS [Shigella boydii CDC 3083-94] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|223936942|ref|ZP_03628851.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase [bacterium Ellin514] gi|223894511|gb|EEF60963.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase [bacterium Ellin514] Length = 553 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 11/94 (11%) Query: 1 MNQKILLAEDDDD-----MRRFLIKALGKAGYEVVSCNNGASAYD-----KVREEPFSLL 50 M + ++ DDD + R L + G Y V+S ++GA+A + K+R EP +L Sbjct: 1 MMKPVIWTVDDDPGVLRAVERDLRRQYGDR-YRVISADSGAAALEGVKQLKLRNEPVALF 59 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFA 84 L D MP M G+E +A EL P+ K +T +A Sbjct: 60 LVDQRMPRMSGVEFLEKAIELYPEAKRALLTAYA 93 >gi|114766219|ref|ZP_01445210.1| putative two-component response regulator [Pelagibaca bermudensis HTCC2601] gi|114541504|gb|EAU44548.1| putative two-component response regulator [Roseovarius sp. HTCC2601] Length = 209 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 49/100 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + L +DD+ +RR L + + G++V +G + D + D+ +P +DG EL Sbjct: 11 VHLVDDDESVRRALARLIRAGGFDVHPHASGETFLDDFDPAVAGCAILDMYLPRLDGFEL 70 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 A R L P+L V+F+TG + + + L+KP Sbjct: 71 AERVAALQPELPVVFLTGRGDIGMGVRAMKEGAFDFLTKP 110 >gi|94269023|ref|ZP_01291352.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] gi|93451376|gb|EAT02236.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] Length = 453 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-D 72 MRR L + L AG + + +G +A+ ++ + L+L+D+ +P +DG+EL R +L Sbjct: 1 MRRLLEEELSDAGLAIQTTADGTAAWQQLSQWQPDLVLSDLRLPGLDGLELLGRIRQLPP 60 Query: 73 PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 P V+ IT F V ++ L+KP L L+ VNR L Sbjct: 61 PQPAVIIITAFGTVPQAVEALKLGADDFLTKPLDLDHLLLCVNRTL 106 >gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 226 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I+L ED++ + FLI L GYEV+ +G A + +E+ +L+L D ++P DG+ + Sbjct: 6 IMLVEDEESLASFLITELELEGYEVIWAKDGREALEIFKEKDITLILLDWMLPIYDGLTV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + ++ ++ IT + + + ++KPF + +L+ + +L Sbjct: 66 LRRIRQ-SSNVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVL 118 >gi|6573136|gb|AAF17564.1|AF201841_1 sensor protein EvgS4 [Escherichia coli] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|58337790|ref|YP_194375.1| two-component system regulator [Lactobacillus acidophilus NCFM] gi|227904440|ref|ZP_04022245.1| two-component system regulator [Lactobacillus acidophilus ATCC 4796] gi|58255107|gb|AAV43344.1| two-component system regulator [Lactobacillus acidophilus NCFM] gi|227867815|gb|EEJ75236.1| two-component system regulator [Lactobacillus acidophilus ATCC 4796] Length = 238 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 41/68 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L YE V NNG D + F +L D+++P+++G+E Sbjct: 3 KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALAQDFDAILLDLMLPDLNGLE 62 Query: 64 LARRATEL 71 +ARR ++ Sbjct: 63 IARRVRQV 70 >gi|30063777|ref|NP_837948.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella flexneri 2a str. 2457T] gi|30042032|gb|AAP17758.1| putative sensor for regulator EvgA [Shigella flexneri 2a str. 2457T] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 14/121 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL EDD D+ L L K G+ + + G A + R+ L+L DI++P+ DG+ Sbjct: 7 KKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGL 66 Query: 63 ELARRATELDPDLK---VMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ + DPDL V+F+T A+ V L +N + KPF +R+L+ + Sbjct: 67 DIC-KGIRKDPDLAAIPVIFLTARASETDRIVGLELGAN-----DYVVKPFFVRELIARI 120 Query: 115 N 115 Sbjct: 121 K 121 >gi|331092927|ref|ZP_04587702.2| response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022096|gb|EGI02153.1| response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 568 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 11/124 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+A+D R L + + G+ V+S NG A E L+L D +MP MDG Sbjct: 7 NLCILIADDSTSDRLLLSTIVARQGHRVLSAANGVEAVAMFTSESPHLILMDAMMPVMDG 66 Query: 62 IELARRATELDPD--LKVMFITGFA---AVALNPDSNAPKNAKVLSKPFH---LRDLVNE 113 E ARR L + + ++F+T A+A D+ +SKP++ L +N Sbjct: 67 FEAARRIKALSGESLVPIIFLTSLTEGEALARCLDAGGD---DFMSKPYNPLVLAAKINA 123 Query: 114 VNRL 117 +NRL Sbjct: 124 MNRL 127 >gi|325276364|ref|ZP_08142141.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324098515|gb|EGB96584.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 659 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ +L+ +D+ +R F+ LG G V+ + + + + LL+TD+ +P + Sbjct: 535 DRTVLVVDDEPSVRLFVSDVLGGLGCTVIEAADSQAGLQLLSSDTRIDLLVTDVGLPGGI 594 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+++A + ++ L V+F+TGF AL + +L+KPF + +LV V+ +L Sbjct: 595 DGLQMASSSRQIRKALPVIFMTGFTNPALFEHELLRDPSALLTKPFAVDELVARVHAML 653 >gi|319899986|ref|YP_004159714.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415017|gb|ADV42128.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 1333 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 15/123 (12%) Query: 4 KILLAEDDDDMRRFLIKALGK---AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++L+ ED++D L+K LG+ YEV +NG D V E + L+L+D++MPEM Sbjct: 1084 RLLIVEDNED----LLKTLGQLFAPYYEVTLAHNGREGMDMVLEVEYDLILSDVMMPEMS 1139 Query: 61 GIELARRATELDPDLK-----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ E+ ++ V+ +T +V + D ++KPF+ + L+ N Sbjct: 1140 GVEM---CAEIKGNINMCHIPVVLLTALDSVEQSIDGLRCGADDYIAKPFNGKMLLMRCN 1196 Query: 116 RLL 118 ++ Sbjct: 1197 NIV 1199 >gi|307592131|ref|YP_003899722.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306985776|gb|ADN17656.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 209 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D D R + L GY V NG A + P L+L DI MP+++G E Sbjct: 14 KILVVDDTIDSLRLMANMLTDQGYNVRKVLNGQMALTAAQSAPPDLILLDINMPQLNGYE 73 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ++ + ++ V+FI+ V + + ++KPF+ +LV V L ++ Sbjct: 74 VCQQLKNNPITAEIPVIFISALDEVLDKVKAFSVGAVDYITKPFYFEELVTRVETQLKLR 133 >gi|303326429|ref|ZP_07356872.1| chemotaxis protein CheY [Desulfovibrio sp. 3_1_syn3] gi|302864345|gb|EFL87276.1| chemotaxis protein CheY [Desulfovibrio sp. 3_1_syn3] Length = 126 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N ++L+ +D MRR + L + G+ VV ++G +A++ + E +++D MP+M Sbjct: 6 NMRVLVVDDFSTMRRIVRNILRQLGFNNVVEADDGTTAWEVLNREKVEFIVSDWNMPQMT 65 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L R RA+E D+ + +T A ++ K + + KPF + +++++ Sbjct: 66 GIDLLRKVRASEQFADIPFLMVTAEAQQENIIEAVQAKVSNYIVKPFTADTMKQKIDKIF 125 >gi|294054948|ref|YP_003548606.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614281|gb|ADE54436.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 638 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I +AED+ +R L L + G + C NGA+ + +RE+P L+ D+ MP MDG+E Sbjct: 513 RIAVAEDNLANQRLLQIMLKRLGMKAQFCENGAALIEYLREQPCDLVFMDLQMPVMDGLE 572 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R E L+ + I A AL+ D A + LSKP + L + L Sbjct: 573 ATELIRHGEAGEALQDVKIIALTANALSDDEARCLEAGMDAYLSKPLKIDTLKGAIQSLF 632 >gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 224 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A +K E P +L+ D+++P+ DG E Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEGP-DVLILDVMLPDTDGYE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 114 Query: 117 L 117 + Sbjct: 115 M 115 >gi|298346157|ref|YP_003718844.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390083|ref|ZP_07372037.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654737|ref|ZP_07907643.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657339|ref|ZP_07910221.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236218|gb|ADI67350.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326565|gb|EFL93809.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491201|gb|EFU80820.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491811|gb|EFU81420.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 225 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 8/118 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + L +AL + GYEV + G SA +V + +L D+ +P+MDG++ Sbjct: 3 RVLLVEDDPAIAEPLTRALQREGYEVGAHVTGGSALKQVNDSDMVIL--DLGLPDMDGLD 60 Query: 64 LAR--RATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR RA + P L + TG + + D+ A ++KPF L +L+ V LL Sbjct: 61 VARTIRAQGITIPILILTARTGEVDMVVGLDAGAD---DYVTKPFRLGELLARVRALL 115 >gi|153003522|ref|YP_001377847.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152027095|gb|ABS24863.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 123 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KILL +D + L K Y+VV+ +GA +K E L+L D+VMP MDG Sbjct: 3 RKKILLVDDSSTVLLMERMILSKYAYDVVTAKDGAEGVEKAIAERPDLILMDVVMPRMDG 62 Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR E + ++ V+ +T +A A ++KP + +L+ +V L Sbjct: 63 FEACRRIREQEDTREIPVIMVTTRGELASVESGYASGCNDYVTKPINGLELLAKVRSCL 121 >gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] Length = 1191 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED D R L+ L + E NG A +++ E + L+ D MP MDG E Sbjct: 1073 KILVVEDQPDNRILLLLMLQEFDCETDWVENGQEALERILAEDYDLVFMDCQMPVMDGYE 1132 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 R E + + +V+ I G A A+ D NA + LSKP + D+ +N+ Sbjct: 1133 ATRLLREQETEDRVIII-GLTANAMTRDREKCLNAGMDDYLSKPVLIEDIEQILNK 1187 >gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905] gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905] Length = 230 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ + + L K L K+GY V + +G A + + L++ D+ +P+MDGIE Sbjct: 2 KLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNLPKMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVNRLL 118 + + D+K++ ++ +A+ + + + A L KPF ++L + LL Sbjct: 62 VLEQIRVQSEDVKILILSARSAIH-DKIAGLDRGANDYLIKPFDFQELDARIRNLL 116 >gi|58581214|ref|YP_200230.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425808|gb|AAW74845.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 483 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 55/117 (47%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ L + G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 28 LVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 87 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 P V IT F ++ L ++ +SKP + L V L + N Sbjct: 88 TEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 144 >gi|75812473|ref|YP_320092.1| response regulator receiver hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75705229|gb|ABA24903.1| response regulator receiver hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 519 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D R LI L + G EV++ + A V F L + DI +P+ DG Sbjct: 397 RILVVDDEVDTRDLLISILEQEGSEVITAASAQEAMVAVCNSQFDLFVFDIGLPQEDGYT 456 Query: 64 LARRATELDP----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R +L+ ++ + +T +AA + A K L+KP +LV ++ LL Sbjct: 457 LLTRVRQLEQQHNREIPAIALTAYAAKEYQQQALAVGFQKYLAKPVEPDELVVAISSLLE 516 Query: 120 I 120 I Sbjct: 517 I 517 >gi|56479283|ref|YP_160872.1| histidine kinase [Aromatoleum aromaticum EbN1] gi|56315326|emb|CAI09971.1| Histidine kinase [Aromatoleum aromaticum EbN1] Length = 766 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ ++R L + L A + VV+ ++G A D++ E + ++LTDI MP++DG Sbjct: 646 RAILVVDDEAEIRETLAEMLTDARHRVVTASSGREALDRMATECYDVILTDIRMPDLDGR 705 Query: 63 ELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L + P+ +V+F+TG + A V+ KPF D+ Sbjct: 706 ALYQEVERRWPEQAGRVVFVTGDTLTDGLREFAAACGRPVIEKPFLPSDV 755 >gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7] gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1] gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas aeruginosa PA7] gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] Length = 229 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P Sbjct: 2 VGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTS 61 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 GIELARR EL D+ ++ +T A + N + +V ++KPF R+LV Sbjct: 62 GIELARRLKRDELTVDIPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVAR 116 Query: 114 VNRLL 118 + +L Sbjct: 117 LKAVL 121 >gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1] gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1] gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1] gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1] gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 229 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +DD ++ + L + GYE +S NG A K+ P +L++ DI+MPEMDGI Sbjct: 2 KILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + + D L ++ ++ ++KPF+ +++ V LL Sbjct: 62 EVIKEVRK-DSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLL 116 >gi|330872779|gb|EGH06928.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 792 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 669 KRVLVVDDSLTVRELERKLLVGRGYDVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 728 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 729 ELVTLLRRDTRLQ-SLPVMVVS 749 >gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 239 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MDG + Sbjct: 20 RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 79 Query: 64 L--ARRATELDPDLKVMFITGFA 84 L + R+T D V+ IT A Sbjct: 80 LLDSLRSTRFDT--PVLMITAKA 100 >gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 46/82 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ +R F+I L + +EV+ G A V+ E L+L DI++P+MD Sbjct: 1 MGARILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMD 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G ++ + + P L V+ +T Sbjct: 61 GFQVCKEISCDYPSLSVIMLTA 82 >gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 239 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR D +F+T A + L D ++KPF L ++V + Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 126 Query: 117 LL 118 +L Sbjct: 127 IL 128 >gi|291525161|emb|CBK90748.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] Length = 220 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD+D+ + L GY+ +G DK+ + + LLL DI++PE++G EL Sbjct: 4 ILIVEDDNDINNLICNTLKAEGYQCERAFDGKEGADKIEQNIYDLLLLDIMLPEINGYEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D V+ I+ V + KPF + +L+ V +L Sbjct: 64 LDYVRRI-GDTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVL 116 >gi|253699705|ref|YP_003020894.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774555|gb|ACT17136.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 829 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +LL +D++ + + L + G+EVV+ +G A + + + SL++ D+ MP +DG E Sbjct: 718 VLLVDDEETILELGREMLKELGFEVVTAGDGWEAVEVFQSRDDISLVILDLTMPRLDGEE 777 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R LDP LKV+ +GF + + A + KP+ L L Sbjct: 778 CFRALRRLDPQLKVVMSSGFTQQEVTDKLDGI--AGFIQKPYKLSTL 822 >gi|291287747|ref|YP_003504563.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290884907|gb|ADD68607.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 434 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 56/116 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI ED+ +R ++ L + ++ +NG A D E L++TDI MP MDG+E Sbjct: 10 KIFYVEDEPFIREGFVRFLKRRTDKLYVFSNGQEALDAFSEIRPDLIITDIRMPVMDGLE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + E+DP + ++ TG S K + KP +L+ V ++ + Sbjct: 70 MSEKIKEIDPSVPIIVTTGHNDEDFFLRSIDIGIDKYIKKPVSFTELIGVVKKITS 125 >gi|261406973|ref|YP_003243214.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283436|gb|ACX65407.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 246 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 40/69 (57%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+A+D+ D+ L L + GY V+ +G A++ + EP L + DI+MPE+DG Sbjct: 10 GRTILIADDESDITELLRLFLEREGYRVLEAISGREAWNILHREPVDLAVVDIMMPELDG 69 Query: 62 IELARRATE 70 +L R E Sbjct: 70 YQLIARIRE 78 >gi|153812069|ref|ZP_01964737.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174] gi|149831724|gb|EDM86810.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174] Length = 986 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 7/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEP--FSLLLTDIVMPEMDG 61 ILL ED++ R ++ L + G+ V + NGA A +KV+ EP + L+L D+ MP M+G Sbjct: 864 ILLVEDNELNREIAVEILNEYGFLVDTAKNGAEAVEKVKNSEPGNYDLVLMDVQMPVMNG 923 Query: 62 IELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 E ++ LD P L + I A A + D + LSKP + +L++ ++ Sbjct: 924 YEATKQIRALDNPALAGITILAMTANAFDEDRKKALECGMDGFLSKPIVIEELISTLH 981 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 K L+ +DD + + K L + G +G A + R+ + F + D +P+ Sbjct: 721 KALVVDDDFNTCDSVTKMLVRVGMRSEWTLSGREAVLRARQSMELGDAFHAYIIDWRLPD 780 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 M+GIE+ R+ L D ++ +T + + ++ A +KP + D+ Sbjct: 781 MNGIEVTRQIRSLGDDTPIIILTAYDWSDIEAEAKAAGVTAFCAKPLFMSDI 832 >gi|158520903|ref|YP_001528773.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] gi|158509729|gb|ABW66696.1| response regulator receiver protein [Desulfococcus oleovorans Hxd3] Length = 207 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 54/114 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K +L DD+ + ++ + YEV + +NG + P ++LTDI MP++ Sbjct: 1 MEKKKVLVIDDEQIVLDSVRKILADRYEVETADNGTRGIKLALKNPCDIVLTDIRMPDVG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+ + R P L VM ITG+A+V + A + KPF L V Sbjct: 61 GLIVLREIKRQKPSLPVMIITGYASVRSAVAAMKLGAADYIEKPFTPEQLAEAV 114 >gi|110806323|ref|YP_689843.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella flexneri 5 str. 8401] gi|110615871|gb|ABF04538.1| putative sensor for regulator EvgA [Shigella flexneri 5 str. 8401] gi|333001508|gb|EGK21076.1| sensor protein evgS [Shigella flexneri VA-6] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|24113731|ref|NP_708241.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella flexneri 2a str. 301] gi|24052805|gb|AAN43948.1| putative sensor for regulator EvgA [Shigella flexneri 2a str. 301] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|73539168|ref|YP_299535.1| PAS [Ralstonia eutropha JMP134] gi|72122505|gb|AAZ64691.1| PAS [Ralstonia eutropha JMP134] Length = 1060 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL ED+ + L +AG +V NNG A + + F L+L D+ MP +DG+ Sbjct: 788 RTVLLVEDNPINQEVAQALLTQAGMQVTQANNGQHALGLLAQGRFDLVLMDVQMPMLDGL 847 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRLL 118 E +R DP M + A AL D A +SKP R L + RL+ Sbjct: 848 ETTQRIRR-DPRHASMPVVALTASALEDDRQRCLAAGMDDYVSKPIEPRKLYQVMARLV 905 >gi|56479052|ref|YP_160641.1| complex sensory protein [Aromatoleum aromaticum EbN1] gi|56315095|emb|CAI09740.1| Complex sensory protein with histidine kinase domain [Aromatoleum aromaticum EbN1] Length = 1246 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ +LL +D+ ++ L + L GY ++ N A A D + + ++++D +P MDG Sbjct: 1117 DRTLLLVDDEPSIQSALRRVLRSEGYILLFAGNAAEALDLLAKHAVGVVMSDFRIPGMDG 1176 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEV 114 I+L R L PD + ++G++ + D+ + + L KP+ R+L+ V Sbjct: 1177 IQLLDRVKTLYPDTVRLVLSGYSDIGTLTDAIDRGSIFRFLHKPWDDRELLQSV 1230 >gi|99081202|ref|YP_613356.1| two component, sigma54 specific, Fis family transcriptional regulator [Ruegeria sp. TM1040] gi|99037482|gb|ABF64094.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ruegeria sp. TM1040] Length = 459 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + + L KPF L +L+ + LT Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPELMKRTAKALTE 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|330897241|gb|EGH28660.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. japonica str. M301072PT] Length = 783 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV+ ++G A +++ + F L+L D MP MDG E Sbjct: 661 RVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGYE 720 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R R++ P+L ++ +T A A L+KPF +LV+ +++ + I Sbjct: 721 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWIPI 779 >gi|301060742|ref|ZP_07201557.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300445139|gb|EFK09089.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 120 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ +R + L AGYEV++ NG +K+ EE L++ DI M + +G++ Sbjct: 3 KILIVDDEEHIRYLYSEELSDAGYEVITAENGYMLLEKIEEEKPDLVVLDIKMVDYNGLD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L + DL V+ T + N S A + K F L +L N++ Sbjct: 63 LLQDIRNKFYDLPVVLCTAYDTFKENMKSIAADFYVI--KSFDLSELKNKI 111 >gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 234 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++LL +D+ +R + L + + V +NG ++ +++ P L+++DI+MP++D Sbjct: 5 MSARLLLVDDEPGLREAVQAYLEDSNFNVDVASNGREGWELLQKNPPDLVISDIMMPQVD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G + + E DP K M + A + D A +SKPF +LV V L Sbjct: 65 GYQFLSQMRE-DPRFKAMPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNL 123 Query: 118 L 118 L Sbjct: 124 L 124 >gi|294146553|ref|YP_003559219.1| two-component system response regulator [Sphingobium japonicum UT26S] gi|292676970|dbj|BAI98487.1| two-component system response regulator [Sphingobium japonicum UT26S] Length = 236 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD +R+ L+ A GKAG E + +G +A V L++ DI MP MD Sbjct: 1 MPSTILIVDDDPHIRQLLVFAFGKAGLETIEAADGEAALAAVERHAPDLVILDINMPRMD 60 Query: 61 GIELARRATELDPDLKVMFIT 81 G+E+ RR D D+ + F++ Sbjct: 61 GLEVCRRLRAHD-DVPIFFLS 80 >gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980] gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980] Length = 229 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+A+DD ++ L + GYE V +G A K+R P LL+ DI+MPEMDG+ Sbjct: 2 KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDGM 61 Query: 63 ELAR 66 ++ + Sbjct: 62 QVVK 65 >gi|259416603|ref|ZP_05740523.1| nitrogen assimilation regulatory protein [Silicibacter sp. TrichCH4B] gi|259348042|gb|EEW59819.1| nitrogen assimilation regulatory protein [Silicibacter sp. TrichCH4B] Length = 459 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + + L KPF L +L+ + LT Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPELMKRTAKALTE 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|237798670|ref|ZP_04587131.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021523|gb|EGI01580.1| sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 444 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++A+D+ +R+ + + L +G+EV ++ E ++LTD+ MP M Sbjct: 1 MLNSVIVADDEAPIRQAVEQWLTLSGFEVQVFARAEDCLAQIPEHFPGVVLTDVRMPGMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL R LD L V+ +TG V + ++ L KPF L++ + R L Sbjct: 61 GLELLNRLQSLDRGLPVVLLTGHGDVPMAVEAMRDGAYDFLEKPFSPETLISNLRRAL 118 >gi|257414207|ref|ZP_05591941.1| putative two-component response regulator [Roseburia intestinalis L1-82] gi|257200850|gb|EEU99134.1| putative two-component response regulator [Roseburia intestinalis L1-82] Length = 551 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIK--ALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KI LAED+ MR + A + G+E V ++G AY +++ +L+TDI MP MD Sbjct: 10 KIFLAEDEIVMREGIRNNIAWQEEGFEFVGEASDGELAYPMIQKLKPDILITDIRMPFMD 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+EL+R + PD ++ ++G+ ++ + L KP L+ + R+ Sbjct: 70 GLELSRIVKQELPDTSILILSGYGEFDYAKEAISIGVEDYLLKPVTSAQLLEAIRRI 126 >gi|190893346|ref|YP_001979888.1| chemotaxis two-component response regulator protein [Rhizobium etli CIAT 652] gi|218513510|ref|ZP_03510350.1| chemotaxis two-component response regulator protein [Rhizobium etli 8C-3] gi|190698625|gb|ACE92710.1| chemotaxis two-component response regulator protein [Rhizobium etli CIAT 652] Length = 122 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R L AGY V +GA + F L++TD+ MP MD Sbjct: 1 MSANILTVDDSASIRLTTKVTLSNAGYNVTEAVDGAEGLATAKSSRFDLIVTDLNMPVMD 60 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + +L + ++F+T + L + A L+KPF +LV V ++L Sbjct: 61 GLTMIEELRKLPGQAGVPIIFLTTESDTDLKARAKAAGATGWLTKPFDPENLVKIVKKVL 120 >gi|197124633|ref|YP_002136584.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196174482|gb|ACG75455.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 712 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D L AL AGYE+V +GA A + + +L+L D+ MPE+DG E Sbjct: 8 KILLVDDRPANLLALESALSGAGYELVKAGSGAEALRFLLRDECALILLDVNMPELDGYE 67 Query: 64 LAR--RATELDPDLKVMFITGFAA 85 AR R ++ ++FIT + A Sbjct: 68 TARLVRQNPRTRNIPIVFITAYGA 91 >gi|149919526|ref|ZP_01908006.1| DNA-binding response regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149819651|gb|EDM79078.1| DNA-binding response regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 121 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 20/128 (15%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ EDD ++ L KAL GY V +G + + EE L++ DI+MP +DG Sbjct: 3 GEHILIVEDDPSVQTLLGKALTAQGYRVTQAQDGLAGLTALEEEQPDLIIADIMMPRLDG 62 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA---------KVLSKPFHLRDL 110 + + + + V+F+T N P++ ++KPF L +L Sbjct: 63 MTFVKAIKRNAGTRSVPVIFLTA---------KNDPRSVVEGINVGAKYYVTKPFQLDEL 113 Query: 111 VNEVNRLL 118 +++V + L Sbjct: 114 LSKVEKAL 121 >gi|153833417|ref|ZP_01986084.1| putative sensor protein RcsC [Vibrio harveyi HY01] gi|148870305|gb|EDL69235.1| putative sensor protein RcsC [Vibrio harveyi HY01] Length = 776 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 44/83 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K L+ +D + R L L G E ++ +G A +K+ ++LTD+ MP M G+E Sbjct: 661 KALVVDDVEFNREILQYHLNLLGIECITAIDGVDALNKLESNVVDVVLTDVSMPNMGGVE 720 Query: 64 LARRATELDPDLKVMFITGFAAV 86 LA R +DP L ++ +T A V Sbjct: 721 LANRTKIMDPTLPIIAVTARATV 743 >gi|170722475|ref|YP_001750163.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760478|gb|ACA73794.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 220 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + L + GY + +G S ++ E F L++ D+ +P MDGIE Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR L V+ +T A+ L KPF L +L + LL Sbjct: 62 LLRRVRAGGDSLPVLILTARDALDDRITGLDAGADDYLVKPFDLNELKARLRALL 116 >gi|157164104|ref|YP_001467231.1| two component transcriptional regulator [Campylobacter concisus 13826] gi|112801926|gb|EAT99270.1| two component transcriptional regulator, winged helix family [Campylobacter concisus 13826] Length = 222 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD + + + L GYEV + ++G A D + + + L + DI +P ++G E Sbjct: 2 KILLLEDDLGFQESVCEFLQTLGYEVTAVSDGQEACDLIEKNFYHLFILDIKVPGVNGHE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + L+P+ +M T + + L KPF L +L V L+ Sbjct: 62 VIKYIRSLNPNAPIMITTSLVDIDDMAIGYELGCNEYLKKPFELAELKFRVAELM 116 >gi|94265602|ref|ZP_01289346.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94269201|ref|ZP_01291397.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451306|gb|EAT02186.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453881|gb|EAT04239.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 122 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +RR + + + + G+ NG ++K E +++ DI MP MD Sbjct: 1 MGKSILIVDDSAMIRRIVSQLVQQLGHRPTVAENGQQGWEKALEIGPDMIIMDIEMPVMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE R +A + + V+F T + + A L+KP DL +N +L Sbjct: 61 GIEATRAIKADKRTTAIPVVFFTALGSEENIQAAEAAGGNGFLNKPICKEDLGKAINEIL 120 Query: 119 T 119 Sbjct: 121 A 121 >gi|88858110|ref|ZP_01132752.1| putative Sigma-54 dependent response regulator; regulation of polar flagellae expression [Pseudoalteromonas tunicata D2] gi|88819727|gb|EAR29540.1| putative Sigma-54 dependent response regulator; regulation of polar flagellae expression [Pseudoalteromonas tunicata D2] Length = 450 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ IL+ EDD ++ LI L AG ++ + +A +++ SL+++D+ M M Sbjct: 1 MNENTILVVEDDAGLQEALIDTLELAGIHCIAADCAENALMALKKHKVSLVVSDVQMGGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+L + PDL V+ +T +A + ++ ++KPF L+N V+R L Sbjct: 61 SGIDLLKSIKLNYPDLPVLMMTAYATINDAVEAMRLGAINYMAKPFAPEVLLNMVSRYL 119 >gi|117920404|ref|YP_869596.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117612736|gb|ABK48190.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 226 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +DD R +L +AL G+EV NG ++R +++ D+VMP+MDG Sbjct: 3 KILLVDDDPLFRVWLTEALKAQGHEVECAVNGVEGLKRIRSFRPDIIMLDLVMPQMDGFS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + P +M ++ A S L+KPF +R+L+ ++ L Sbjct: 63 LLEARDCITP---IMMLSARDNEADRIRSYELGADDFLTKPFSIRELLVRLHAL 113 >gi|301166213|emb|CBW25788.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 936 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED+ + + K L K G E NG + V + + L+L D MPEMDG+E Sbjct: 819 VLIAEDNKINQIVITKMLSKVGIEAELVENGLEVLEAVERKKYDLILMDCHMPEMDGLEA 878 Query: 65 ARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R+ E D + I +A A+ + +A + +SKP + D + +N+ Sbjct: 879 TRKIIEKYKQDAPI--IVAVSASAMKDEIQTSYDAGMRDFISKPVKVNDFIRVLNKFF 934 >gi|300726850|ref|ZP_07060280.1| response regulator [Prevotella bryantii B14] gi|299775963|gb|EFI72543.1| response regulator [Prevotella bryantii B14] Length = 522 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L +D+ ++ + I L K GYEVV+ +NG+ A D +++ + L++ D +MP + G Sbjct: 3 NGLLLWVDDEIELLKAHIIFLEKKGYEVVTASNGSDAIDLCKQQNYDLIMLDEMMPGISG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E ++ ++ P ++ +T + + K A L KP VN LL++K Sbjct: 63 LETLQKIKDIQPTTPIVMVTKSEEEHIMDQAIGSKIADYLIKP------VNPSQILLSLK 116 >gi|291528452|emb|CBK94038.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 261 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA--YDKVREEPFSLLLTDIVMPEMDG 61 +IL+ EDD D+ L AL KAGY +G K+ E ++L+L D+++P + G Sbjct: 8 EILIIEDDKDINDLLATALSKAGYRTRQAWSGTEGELLLKLDREAYALVLLDLMLPGLSG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 EL R ++D L V+ +T + + ++KPF ++++V V Sbjct: 68 EELLARIRQMDASLPVIILTAKDELDEKINLLVAGADDYITKPFEIKEVVARV 120 >gi|281601798|gb|ADA74782.1| putative Sensor protein [Shigella flexneri 2002017] Length = 1088 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 852 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 911 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 912 TRKLREQNSSLPIWGLTANA 931 >gi|297569043|ref|YP_003690387.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924958|gb|ADH85768.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 461 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 55/116 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ + L + L GYE + + + R L++TD+ MP MDG+ Sbjct: 2 KTILVVDDEPNYLVILSELLRDEGYETFTAGSAEEGLEIARHTDLDLIITDMRMPGMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL + ++P L V+ IT F V + L+KPF +L+ + + L Sbjct: 62 ELLKTIKGINPSLPVIMITAFGEVDKAVAAMRAGAFNYLTKPFDNDELLVSIRKAL 117 >gi|322419279|ref|YP_004198502.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125666|gb|ADW13226.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 774 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNN---GASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ ED+ + ++ L G++V+ + G + +++ +E +LLTD+VMP M G Sbjct: 642 ILVVEDEPGVLNLVVHTLRMRGFKVLETTDPEQGITLFEEHADE-IDMLLTDVVMPFMSG 700 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA P+LKV+F++G ++ + K + L KPF L+ +V L Sbjct: 701 PTLADLLLRKKPELKVLFMSGHTDNRVSFEKTLEKGMQFLPKPFASDALIRKVRDTL 757 >gi|229836456|ref|ZP_04456623.1| putative hybrid two-component system regulatory protein [Yersinia pestis Pestoides A] gi|229706524|gb|EEO92531.1| putative hybrid two-component system regulatory protein [Yersinia pestis Pestoides A] Length = 851 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 +Q +L+ ED+ D+R+ L + L + GY + + A + + P S++++D+++P +M Sbjct: 737 DQLVLVLEDEPDVRQTLCEQLHQLGYLTLETGDSRQALALMADVPDISIVISDLMLPGDM 796 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ ++A + P LK++ I+G L N ++L KPF+ + LV + R+ Sbjct: 797 TGAEVLQQARSVYPHLKLLLISG---QDLRRSKNFMLEVELLRKPFNQQQLVQALQRV 851 >gi|268679004|ref|YP_003303435.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268617035|gb|ACZ11400.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 228 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 54/109 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L AED++ +R+ + +LG EV NG A D E ++LTD+ MP DG+E Sbjct: 12 RLLYAEDEEGIRKPMANSLGYYFKEVFEVKNGEEALDCYYEHHPDIILTDLRMPRKDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +A+ D + ++ IT + K K L KP L +L++ Sbjct: 72 MAKEIRHNDKKIPIIMITAHTDKEYLLSAIDLKIEKYLIKPVALDELLS 120 >gi|284989870|ref|YP_003408424.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063115|gb|ADB74053.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 232 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 15/124 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q +L+ ED +++R + L +AG +V + +GA A +VR + +++ D+ +P+ DG Sbjct: 3 EQSVLVVEDTEEIRELVCTVLRRAGTDVRAVASGAEALAEVRRDAPDVVVLDLGLPDADG 62 Query: 62 IELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+ R+ + + V+ +T A +A+ D ++KPF R+LV V Sbjct: 63 TEVCRQ-IRAESECYVLMLTARAEEVDLLIGLAVGADGY-------MAKPFSPRELVARV 114 Query: 115 NRLL 118 LL Sbjct: 115 QALL 118 >gi|222150188|ref|YP_002551145.1| chemotaxis receiver protein [Agrobacterium vitis S4] gi|221737170|gb|ACM38133.1| chemotaxis receiver protein [Agrobacterium vitis S4] Length = 122 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R AL AGY+V +G +K + F L++TD+ MP M+ Sbjct: 1 MSAHILTVDDSASIRMTTKIALTNAGYKVTEAVDGLDGLNKAKSSQFDLIVTDLNMPNMN 60 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + A R + + ++F+T + + + A ++KPF LV ++L Sbjct: 61 GLAMIEALRRSPAHTGIPIIFLTTESDADMKNRAKAAGATGWITKPFDAEQLVKIARKVL 120 >gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 846 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ R + L AG++V +NG A ++++ P L++ DI MP MDG+ Sbjct: 729 VLLVDDEPINREVAAEILEDAGFDVTLASNGMEALERLQRHPVDLVIMDIQMPGMDGLTT 788 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 RR ++ PD + I A A D NA Sbjct: 789 TRRIRQM-PDRAHLPIIAMTANAFAEDETECLNA 821 >gi|168703971|ref|ZP_02736248.1| Response regulator receiver domain protein (CheY) [Gemmata obscuriglobus UQM 2246] Length = 121 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 12/123 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +D +R ++ AL GY V++ +G A +K E L++ D+VMP+ +G Sbjct: 3 NDTILVVDDSPTEQRVVVSALQAKGYRVITAADGDEAIEKAGREQPRLIVLDVVMPKKNG 62 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEV 114 ++ R ++ +KV+ +T N D++ K L+KPF +L+ V Sbjct: 63 YQVCRQLKSAPETQHIKVLMLT-----TKNQDADKFWGMKQGADAYLTKPFASDELITNV 117 Query: 115 NRL 117 RL Sbjct: 118 TRL 120 >gi|126657552|ref|ZP_01728708.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110] gi|126621256|gb|EAZ91969.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110] Length = 1497 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 3/112 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED +D R ++ L GY+ NG D+ E+ + ++ D MP +DG E Sbjct: 1380 KILLVEDYEDNRFLMLMLLETLGYQADWVTNGQEFLDQTEEQDYDIVFLDCQMPILDGYE 1439 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 +R + + + + G A A+ D + A + LSKP + L N Sbjct: 1440 AIKRFRQREEEGNHTVVIGLTAHAMEGDRDKCLEAGMDDYLSKPILIESLAN 1491 >gi|153005119|ref|YP_001379444.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028692|gb|ABS26460.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 468 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D+ D R L + + GY+V + ++G A + E ++LTD+VMP MD Sbjct: 1 MKYRVLIVDDEADSRDALAELTQRWGYDVQTASDGTEALRRAIEGHPDVILTDLVMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 G+ L R P+ V+ +TG + Sbjct: 61 GLWLLRALRAELPECPVVLLTGRGTI 86 >gi|119488886|ref|ZP_01621848.1| sensory box histidine kinase [Lyngbya sp. PCC 8106] gi|119455047|gb|EAW36189.1| sensory box histidine kinase [Lyngbya sp. PCC 8106] Length = 401 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + IL+ +D +D L L + GY+V S NG SA + L+L DI+MP+++ Sbjct: 4 LKPSILIVDDIEDNLLLLTAILTEKGYQVQSAVNGLSALSLAVQNRPDLILLDIMMPDIN 63 Query: 61 GIELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ R + DP D+ ++FI+ V + + L+KP + +L++ V Sbjct: 64 GYEVCHR-LKADPRTKDIPIIFISALGEVFDQVKAFSIGAVDYLTKPIRIPELLSRVKTH 122 Query: 118 LTI 120 L++ Sbjct: 123 LSL 125 >gi|91789740|ref|YP_550692.1| multi-sensor signal transduction histidine kinase [Polaromonas sp. JS666] gi|91698965|gb|ABE45794.1| multi-sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 1003 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ D+R FL +L Y+V +G A +++ L+L+D++MP +DG+ Sbjct: 643 RVLVADDNRDLRTFL-SSLLAPHYDVQVVADGREALAAIQQRKPDLVLSDVMMPNLDGLG 701 Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R E DP+ L V+ ++ A + + + L+KPF ++L+ V LT+ Sbjct: 702 LVRALRE-DPETRTLPVILLSARAGQEASLEGLSAGADDYLAKPFTSQELLARVRTHLTM 760 >gi|45443077|ref|NP_994616.1| putative hybrid two-component system regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|45437944|gb|AAS63493.1| putative hybrid two-component system regulatory protein [Yersinia pestis biovar Microtus str. 91001] Length = 851 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 +Q +L+ ED+ D+R+ L + L + GY + + A + + P S++++D+++P +M Sbjct: 737 DQLVLVLEDEPDVRQTLCEQLHQLGYLTLETGDSRQALALMADVPDISIVISDLMLPGDM 796 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ ++A + P LK++ I+G L N ++L KPF+ + LV + R+ Sbjct: 797 TGAEVLQQARSVYPHLKLLLISG---QDLRRSKNFMLEVELLRKPFNQQQLVQALQRV 851 >gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032] Length = 226 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QKIL+ +DD + L L G++ V+ +GA A + E L+L D+++P M+ Sbjct: 1 MSQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GI++ R R P + + T V L +S A ++KPF ++LV + Sbjct: 61 GIDICRLIRQESSVPIIMLTAKTDTVDVVLGLESGAD---DYVNKPFKAKELVARI 113 >gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ ++R L L GY V + G A D + +E L++ DI+MP MDG+E+ Sbjct: 4 ILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIMMPHMDGLEV 63 Query: 65 ARRATE 70 RR E Sbjct: 64 CRRVRE 69 >gi|332755415|gb|EGJ85779.1| sensor protein evgS [Shigella flexneri K-671] Length = 1128 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 892 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 951 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 952 TRKLREQNSSLPIWGLTANA 971 >gi|330955783|gb|EGH56043.1| PAS protein [Pseudomonas syringae Cit 7] Length = 166 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 + IL+ +D+ +R L ALG GY ++ + + +R + LL+TD+ +P M Sbjct: 1 GETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 +G ++A E+ P LK +FITG+A Sbjct: 61 NGRQMADAGREVRPHLKTLFITGYA 85 >gi|330890495|gb|EGH23156.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. mori str. 301020] Length = 237 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 +L +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ DG L Sbjct: 1 MLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDGFSLC 60 Query: 66 R--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R P + V+ +T + A L KPF R+L + LL Sbjct: 61 KWIRQHPRQPHVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 115 >gi|323493714|ref|ZP_08098834.1| chemotaxis protein CheY [Vibrio brasiliensis LMG 20546] gi|323312054|gb|EGA65198.1| chemotaxis protein CheY [Vibrio brasiliensis LMG 20546] Length = 119 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D +R+ + L AGY+V + N+G A KV F ++++D+ MP M G E Sbjct: 3 KILAVDDSVSIRQMVSHTLRDAGYDVETANDGRDALSKVTSAKFDVVISDVNMPNMGGFE 62 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E P K ++ +T + + L KPF+ L+ + R++ Sbjct: 63 LVKALRE-KPQYKFIPILMLTTETSTDKKQQGKSAGATGWLVKPFNPDTLLKTLKRVI 119 >gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 409 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 14/128 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +D+ + L L GY+V +G +A ++V L+L DI+MP +DG Sbjct: 8 QSILIVDDNPNNLEVLAHILTDVGYQVSVAIDGETAIEQVEYHQPELILLDIMMPGIDGF 67 Query: 63 ELARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEV 114 E RR A L ++ ++F+T + DSN N +SKPF +++ + Sbjct: 68 ETCRRLKANPLTCEIPIIFLTALS------DSNNKVNGLSVGAVDYISKPFQSEEVLARI 121 Query: 115 NRLLTIKN 122 L + N Sbjct: 122 RIHLKLYN 129 >gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A +K E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|289207723|ref|YP_003459789.1| Fis family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943354|gb|ADC71053.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thioalkalivibrio sp. K90mix] Length = 473 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N ++L+ EDD R L + L + GY V + A +R++ SL+++D+ +P D Sbjct: 7 LNDRVLVVEDDRGHRELLAEELAEVGYAVTAVETAEEAEQVLRQQTVSLVVSDLRLPGAD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G + A + P + +TGF + + L+KP L L Sbjct: 67 GFHVLEVARDTVPVPGFIMLTGFGTIDQAVTALKAGADDFLTKPVDLEHL 116 >gi|254500170|ref|ZP_05112321.1| hypothetical protein SADFL11_206 [Labrenzia alexandrii DFL-11] gi|222436241|gb|EEE42920.1| hypothetical protein SADFL11_206 [Labrenzia alexandrii DFL-11] Length = 680 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 +LL EDD D+ + + L G+ ++ N A + P +L+DI+MP + +G+ Sbjct: 563 LLLIEDDPDLSKTIADQLQNLGFAILKAENADDARQLALDLPELRAVLSDIIMPGQTNGL 622 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LAR + P+L + +TG+A + D+++ VL+KPF+ L + ++L Sbjct: 623 KLAREIRQNRPELGIALMTGYADWSALADNSSICEFPVLAKPFNDFQLAETLRKIL 678 >gi|218705887|ref|YP_002413406.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli UMN026] gi|300901337|ref|ZP_07119429.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|218432984|emb|CAR13879.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli UMN026] gi|300355238|gb|EFJ71108.1| response regulator receiver domain protein [Escherichia coli MS 198-1] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|218690513|ref|YP_002398725.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli ED1a] gi|218428077|emb|CAR08995.2| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli ED1a] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|242279252|ref|YP_002991381.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] gi|242122146|gb|ACS79842.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] Length = 122 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD R+ L L K G+ V +G A L++TDI MPE +G++ Sbjct: 3 RILVVDDDPISRQVLKAMLEKEGHLVTEAEDGVKAVKGYDRNLIDLVITDIFMPEKEGVQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R + +PD+K++ ++G ++ A N DS + K V +KPF+ ++ ++ LL Sbjct: 63 TVRELMKENPDIKIIAVSGGSSSA-NYDSLDWIKMFGVKYTFTKPFNANAILAAIDDLL 120 >gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] Length = 225 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +D+ MR+ + L + GY V+ +G A D EE SLL+ D++MP MDG Sbjct: 5 KILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPRMDGW 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ R E + ++ +T + + +SKPF + LV VN +L Sbjct: 65 QVCREIRE-SSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAIL 119 >gi|194436363|ref|ZP_03068465.1| sensor histidine kinase/response regulator EvgS [Escherichia coli 101-1] gi|194425091|gb|EDX41076.1| sensor histidine kinase/response regulator EvgS [Escherichia coli 101-1] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|170741015|ref|YP_001769670.1| response regulator receiver protein [Methylobacterium sp. 4-46] gi|168195289|gb|ACA17236.1| response regulator receiver protein [Methylobacterium sp. 4-46] Length = 128 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED++ R L + L ++G+EV+ +G A D E L+L D+ +P MDG E Sbjct: 3 RVLLVEDNELNRDMLSRRLKRSGFEVLFAEDGQQAVDTAAAEMPDLILMDLSLPTMDGFE 62 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA E L+V+ +T A + A +KP L L+ +++ LL Sbjct: 63 ATRALRANEKTAGLRVIALTSHAMSGDRERALAAGCDDYDTKPVDLPRLLGKMHALL 119 >gi|121596078|ref|YP_987974.1| response regulator receiver protein [Acidovorax sp. JS42] gi|222112234|ref|YP_002554498.1| response regulator receiver protein [Acidovorax ebreus TPSY] gi|120608158|gb|ABM43898.1| response regulator receiver protein [Acidovorax sp. JS42] gi|221731678|gb|ACM34498.1| response regulator receiver protein [Acidovorax ebreus TPSY] Length = 120 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL +D MR+ + L AGY VV +G A +K L+L D MP +DGI Sbjct: 2 QSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKAETHDIHLVLADQNMPRLDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ E P K ++ +T ++ + + L KPF L+ + +++ Sbjct: 62 GLTRKLRE-HPRFKSIPILILTTESSDQMKQAGRSAGATGWLVKPFDPTRLIEVIQKVI 119 >gi|6573134|gb|AAF17563.1| sensor protein EvgS1 [Escherichia coli] Length = 1197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|89895181|ref|YP_518668.1| hypothetical protein DSY2435 [Desulfitobacterium hafniense Y51] gi|219669611|ref|YP_002460046.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89334629|dbj|BAE84224.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539871|gb|ACL21610.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRR-----FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 KILL EDD ++ F K+ G+ E+V NGA + +E+ + L+L D+++PE Sbjct: 3 KILLVEDDLQLQEIIEDYFTAKSAGEI--EMVCAANGADGLESAQEKDYDLVLLDVMLPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DG + R D+ +MF+T A + KPF L +L + N L+ Sbjct: 61 VDGFTICRELRR-HSDVPIMFLTARQAEGDRLHGYGLGCDDYMIKPFSLAELYAKANSLV 119 >gi|87306646|ref|ZP_01088793.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87290825|gb|EAQ82712.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 704 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 21/124 (16%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 +IL+AED D +R + L KAG V NG A D E EPF ++LTDI MP Sbjct: 571 RILVAEDGPDNQRLIRYFLEKAGAAVTMVENGQLAIDAALEALRQNEPFHVILTDIQMPV 630 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL--------SKPFHLRDL 110 +DG E R L+ TG VAL + A + AK L SKP L Sbjct: 631 VDGYEATAR-------LRAAGYTG-RIVALTAHAMAGERAKCLEAGCDDFASKPIQRVHL 682 Query: 111 VNEV 114 ++++ Sbjct: 683 ISQI 686 >gi|333016459|gb|EGK35790.1| sensor protein evgS [Shigella flexneri K-304] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|333015994|gb|EGK35326.1| sensor protein evgS [Shigella flexneri K-227] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|332755015|gb|EGJ85380.1| sensor protein evgS [Shigella flexneri 4343-70] Length = 1147 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 911 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 970 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 971 TRKLREQNSSLPIWGLTANA 990 >gi|332344198|gb|AEE57532.1| sensor protein EvgS [Escherichia coli UMNK88] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] Length = 236 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +RR LI ALG AG+EV + A + V P +++ D+++P DG E Sbjct: 8 RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVMLPGADGFE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + D+ V+F+T AV ++KPF + ++ + LL Sbjct: 68 ILQLLRARAVDVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALL 122 >gi|331642996|ref|ZP_08344131.1| sensor protein EvgS [Escherichia coli H736] gi|323961434|gb|EGB57045.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|331039794|gb|EGI12014.1| sensor protein EvgS [Escherichia coli H736] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|320199944|gb|EFW74533.1| Hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli EC4100B] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED+ + RF+ L GY+V C +G KV E L+L DI++P ++G Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62 Query: 62 IELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 IE+ R+ + ++ ++ +T + + DS A ++KPF + +L+ + Sbjct: 63 IEICRKIRQ-HSNVPLIMVTAKDDIPDRVMGLDSGAD---DYVTKPFAIEELLARI 114 >gi|331684029|ref|ZP_08384625.1| sensor protein EvgS [Escherichia coli H299] gi|331078981|gb|EGI50183.1| sensor protein EvgS [Escherichia coli H299] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|331658528|ref|ZP_08359472.1| sensor protein EvgS [Escherichia coli TA206] gi|315298194|gb|EFU57458.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|331054193|gb|EGI26220.1| sensor protein EvgS [Escherichia coli TA206] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|302386781|ref|YP_003822603.1| two component transcriptional regulator, AraC family [Clostridium saccharolyticum WM1] gi|302197409|gb|ADL04980.1| two component transcriptional regulator, AraC family [Clostridium saccharolyticum WM1] Length = 545 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+L+ ED+ + + ++ K G+ + C+NG A ++++++ ++L+DI MPEMD Sbjct: 3 KLLVVEDEKSIAYGIANSIEWEKWGFVISGVCSNGIEALEQIKKDKPHVVLSDIRMPEMD 62 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL + + P++K++ ++G+ Sbjct: 63 GVELMQHLNQHYPEIKIIILSGY 85 >gi|300312654|ref|YP_003776746.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075439|gb|ADJ64838.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 51/100 (51%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 LL ED+ +RR +AL G+ V +C + A + + ++++D+ +P + G+++ Sbjct: 11 LLIEDEQTVRRATAQALELGGFAVTACGSAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 R +D DL V+ +TG V + ++ + KPF Sbjct: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPF 110 >gi|291522449|emb|CBK80742.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 219 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 12/120 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + +L KAGY +G +A DK+ E F L+L DI++P +G E Sbjct: 3 RILIVEDEKPISNLIRLSLAKAGYHCTCVYDGNAAVDKLDREIFDLILLDIMLPGANGFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 L L + V+F+T A+N +N + K+ + KPF + +L+ V +L Sbjct: 63 LMDYIRPL--GIPVIFLT-----AVNSVNNRVRGLKMGAEDYIIKPFEIVELLARVEVVL 115 >gi|293415651|ref|ZP_06658294.1| hybrid sensory histidine kinase [Escherichia coli B185] gi|291433299|gb|EFF06278.1| hybrid sensory histidine kinase [Escherichia coli B185] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|229592481|ref|YP_002874600.1| putative chemotaxis two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229364347|emb|CAY52108.1| putative chemotaxis two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 122 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + AL AGY+V+ ++G A +K+ + L+++D+ MP MD Sbjct: 1 MAKSVLVVDDSISVRQVVGIALKSAGYDVIEASDGKDALNKLTGQKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI + +L + K ++ +T + + + A + KPF ++ V++L Sbjct: 61 GITFVKEVKKL-ANYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKL 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|224538526|ref|ZP_03679065.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM 14838] gi|224519864|gb|EEF88969.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM 14838] Length = 1370 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 43/64 (67%), Gaps = 1/64 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD+++R+++ + L + + + C NG A + ++ L+++DI+MPEMDG+ Sbjct: 1106 RVLVVEDDEEIRKYICRELA-SDFHMSECTNGKEALAMILKKEPDLIISDIMMPEMDGLT 1164 Query: 64 LARR 67 L ++ Sbjct: 1165 LCKK 1168 >gi|254413334|ref|ZP_05027105.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179954|gb|EDX74947.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 864 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D D L + L GY++ NG A + P L+L DI+MP+MDG ++ Sbjct: 13 ILTIDDTPDNLHLLTEMLSAQGYKIRIIPNGRLALKSIANNPPDLILLDIIMPDMDGYQV 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +A+ ++ V+F++G + ++KPF +++++ V L ++ Sbjct: 73 CQQLKASPKTQNIPVIFLSGLNETFDKVKAFEVGGVDYITKPFQVQEVLARVESQLRLQ 131 >gi|168700055|ref|ZP_02732332.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 151 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEV---VSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 + +L+ +DD+ +R L ALG +G+ V + G +AY K LLL D+ MP Sbjct: 18 RGVLVVDDDEPVRALLSVALGISGFAVWLAATGPEGVTAYQK-HASAIDLLLLDVRMPGW 76 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +G E + P + F++G + + A A V KPF L +L++ + L Sbjct: 77 NGPETLAAIRAIAPHVPCCFMSGDTGGYTHQELLASGAATVFHKPFRLGELISHLRNL 134 >gi|167622091|ref|YP_001672385.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352113|gb|ABZ74726.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella halifaxensis HAW-EB4] Length = 456 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V + +++R F LL+ DI +P GIE Sbjct: 13 VLIVDDEPGMRSFLKKALAKK-FALVETASSVEDAEQLRSRCHFDLLIVDIRLPGRSGIE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 72 WHEALNDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCI 126 >gi|170721961|ref|YP_001749649.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida W619] gi|169759964|gb|ACA73280.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida W619] Length = 474 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ EDD+ + + L G+EV CN+ A ++++ +LTD +P M+ Sbjct: 1 MEHSILVVEDDEILGNNIRTYLNLKGFEVTVCNSAELALEQIKRFQPDAVLTDNSLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G +L R P+LKV+ +TG+ V + L+KP L +L Sbjct: 61 GHDLLRTLVAQMPELKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAEL 110 >gi|119469337|ref|ZP_01612276.1| response regulator in two-component regulatory system with PhoQ [Alteromonadales bacterium TW-7] gi|119447201|gb|EAW28470.1| response regulator in two-component regulatory system with PhoQ [Alteromonadales bacterium TW-7] Length = 224 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + L AL K Y V C++G + + E P + + D+ +P++DGIE Sbjct: 2 RILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +A + ++ +T + L+KPFH+ +L N L+ Sbjct: 62 LINKARAQGVTIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELAARCNALI 116 >gi|157963904|ref|YP_001503938.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848904|gb|ABV89403.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella pealeana ATCC 700345] Length = 457 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V + +++R F LL+ DI +P GIE Sbjct: 13 VLIVDDEPGMRSFLKKALAKK-FALVETASSVEDAEQLRSRCHFDLLIVDIRLPGRSGIE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 72 WHEALNDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCI 126 >gi|94990805|ref|YP_598905.1| two-component response regulator yesN [Streptococcus pyogenes MGAS10270] gi|94544313|gb|ABF34361.1| Two-component response regulator yesN [Streptococcus pyogenes MGAS10270] Length = 246 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALRLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|70732213|ref|YP_261969.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68346512|gb|AAY94118.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 465 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ +D+ + L AL + G +V + NG A + +E L+++D MP MD Sbjct: 1 MTHNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L + P L V+ +T ++ V S ++KPF + +L V++ L Sbjct: 61 GPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQF 120 Query: 121 KN 122 ++ Sbjct: 121 RD 122 >gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 213 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A +++E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFMQKERPDVVLMDVSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +KV+ ++ F+ Sbjct: 61 MDGIEATKRLKQYDETIKVLILSSFS 86 >gi|83312500|ref|YP_422764.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947341|dbj|BAE52205.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 168 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +DD +R L L GY V C G + + P L+L D+ MP DG Sbjct: 5 HILVVDDDATVRSILSGILTAQGYRVTPCGGGEEMWAALAAGPADLVLLDVEMPGEDGYT 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L +R E L ++ +TG A+ + LSKP R+L+ + LL Sbjct: 65 LVQRLRERF-ALGIILLTGHTALEHKLHGLEIGADEFLSKPCDRRELLARIKSLL 118 >gi|150390755|ref|YP_001320804.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950617|gb|ABR49145.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 231 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+LL EDD + + ++ L +A YEV+ G+ AY R++ F ++L DI++P+++G+ Sbjct: 3 KVLLVEDDTLVAKIILYYLEQAETYEVIWAKTGSEAYANARDK-FDVILLDILLPDVNGL 61 Query: 63 ELARRATELDPDLKVMFIT 81 +L R TE D ++FI+ Sbjct: 62 DLCSRLTEWH-DCPIIFIS 79 >gi|323970930|gb|EGB66181.1| response regulator receiver domain-containing protein [Escherichia coli TA007] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|320185069|gb|EFW59849.1| Hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella flexneri CDC 796-83] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|317154358|ref|YP_004122406.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944609|gb|ADU63660.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 599 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R + L K G+ S +G A +R PF +L DI MP+MDGIE Sbjct: 476 ILVVEDEAVNRLTAERFLEKIGHRPTSARSGTEALAALRSAPFDCILMDIQMPDMDGIET 535 Query: 65 A---RRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 RRAT++ + + I A L+ K + KP + +L EV+R++ Sbjct: 536 TQAIRRATDIGHNASIPVIALTAHALLDDREKFLKEGMDGYVPKPMTMDELAYEVSRVM 594 >gi|313651190|gb|EFS15589.1| sensor protein evgS [Shigella flexneri 2a str. 2457T] Length = 1128 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 892 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 951 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 952 TRKLREQNSSLPIWGLTANA 971 >gi|309787597|ref|ZP_07682209.1| sensor protein evgS [Shigella dysenteriae 1617] gi|308925175|gb|EFP70670.1| sensor protein evgS [Shigella dysenteriae 1617] Length = 1139 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 903 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 962 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 963 TRKLREQNSSLPIWGLTANA 982 >gi|309791267|ref|ZP_07685798.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308226693|gb|EFO80390.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 123 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD ++ L AL AGY+VV +G ++ +L+++DI+MP MDG+E Sbjct: 8 IFIMDDDLALQTVLEYALRNAGYDVVVARDGQEGIKRLETLAPTLVISDIMMPNMDGVET 67 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E D + ++ +T D A + A ++ KPF + L+ +N +L Sbjct: 68 FQHLKERLQDDGIPIIIMTALNRKPWFADLEA-EGAVIIQKPFEVDRLIGLINTML 122 >gi|307294479|ref|ZP_07574321.1| integral membrane sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306878953|gb|EFN10171.1| integral membrane sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 657 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62 +IL+ EDD + + AL + G+ V+C++ + A + L+++D++MP+M G Sbjct: 531 RILVVEDDPRVLNQTMAALAELGHLPVACDHPSKAAKLLASHRDIGLIMSDVLMPDMTGP 590 Query: 63 ELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R + L V+F+TG+A +A + D +VL KP+ L L ++ L Sbjct: 591 EMVRTLPAIYAHLPVLFVTGYAGDIAESADFGG---HEVLRKPYTLTGLAQALSNAL 644 >gi|300817387|ref|ZP_07097604.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300530013|gb|EFK51075.1| response regulator receiver domain protein [Escherichia coli MS 107-1] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|300918469|ref|ZP_07135064.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300414352|gb|EFJ97662.1| response regulator receiver domain protein [Escherichia coli MS 115-1] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|300903097|ref|ZP_07121034.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|301304743|ref|ZP_07210850.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300404874|gb|EFJ88412.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300839974|gb|EFK67734.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|315256388|gb|EFU36356.1| response regulator receiver domain protein [Escherichia coli MS 85-1] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|293410775|ref|ZP_06654351.1| hypothetical protein ECEG_01750 [Escherichia coli B354] gi|291471243|gb|EFF13727.1| hypothetical protein ECEG_01750 [Escherichia coli B354] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|322421119|ref|YP_004200342.1| response regulator receiver modulated CheW protein [Geobacter sp. M18] gi|320127506|gb|ADW15066.1| response regulator receiver modulated CheW protein [Geobacter sp. M18] Length = 313 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 17/118 (14%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------------EEPFSL 49 + IL+A+D +RR + +L +AGY+VV NG A++ V+ + +L Sbjct: 183 RTILVADDSAFIRRTMCGSLREAGYQVVEAENGEEAWEHVQAVRQKCTASGKAVTDMLNL 242 Query: 50 LLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKP 104 ++TDI MP MDG+ L + + DL+ + + F+++A + + +N + +L+KP Sbjct: 243 VITDIEMPRMDGLHLTSLIRK-EADLEKLPVVIFSSLASDDNKMKWRNLGASDILTKP 299 >gi|238901539|ref|YP_002927335.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli BW2952] gi|238861440|gb|ACR63438.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli BW2952] gi|260448539|gb|ACX38961.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1] gi|315137006|dbj|BAJ44165.1| hybrid sensory kinase in two-component regulatory system [Escherichia coli DH1] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|237730523|ref|ZP_04561004.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2] gi|226906062|gb|EEH91980.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2] Length = 227 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ +L K L +AG+ V +NG + Y + LL+ DI++P+++G + Sbjct: 2 KVLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + ++ +T + L KPF +L+ V LL Sbjct: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|222034108|emb|CAP76849.1| Sensor protein evgS [Escherichia coli LF82] gi|312946971|gb|ADR27798.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli O83:H1 str. NRG 857C] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|218700838|ref|YP_002408467.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli IAI39] gi|218370824|emb|CAR18637.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli IAI39] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|218441594|ref|YP_002379923.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218174322|gb|ACK73055.1| putative CheA signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 17/125 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 Q +L+ +D +R L + KAGY V +G A++K+R P ++ DI MP M+G Sbjct: 828 QTVLIVDDSITVRELLSLSFKKAGYRVEQARDGQEAWEKLRSGLPCDIVFCDIEMPRMNG 887 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---------LSKPFHLRDLVN 112 +EL + D K++ I VA+ A K+ KV +KP+ +DL++ Sbjct: 888 LEL---LANIQKDEKLIHI----PVAVLSSRGAEKHRKVAAKLGASGYFTKPYTEKDLLD 940 Query: 113 EVNRL 117 R+ Sbjct: 941 AAKRM 945 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D +R L GK GYE+ +G A++K+R P L+L DI MP M+G+E Sbjct: 1000 VLIIDDSVMVREMLSMTFGKDGYEIEQARDGQEAWEKLRSGLPCDLILCDIEMPRMNGLE 1059 Query: 64 LARRATE 70 R E Sbjct: 1060 FLSRVQE 1066 >gi|254410144|ref|ZP_05023924.1| hypothetical protein MC7420_7902 [Microcoleus chthonoplastes PCC 7420] gi|196183180|gb|EDX78164.1| hypothetical protein MC7420_7902 [Microcoleus chthonoplastes PCC 7420] Length = 124 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED++ +R +++ L G++ + NG ++ L+L D++MPEMDG Sbjct: 3 KILVIEDEESVRENILELLDAEGFDAIIAENGQKGLHLAQQHDPDLILCDVLMPEMDGYG 62 Query: 64 L--ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + A R+ + +F+T AA + N NA L+KPF L +L++ + Sbjct: 63 VLSALRSQGKTATIPFLFLTAKAAKTDIKQGMNLGANA-YLTKPFTLAELLDAI 115 >gi|191165496|ref|ZP_03027337.1| sensor histidine kinase/response regulator EvgS [Escherichia coli B7A] gi|190904419|gb|EDV64127.1| sensor histidine kinase/response regulator EvgS [Escherichia coli B7A] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|187730064|ref|YP_001880809.1| hybrid sensory histidine kinase TorS [Shigella boydii CDC 3083-94] gi|187427056|gb|ACD06330.1| sensor histidine kinase/response regulator TorS [Shigella boydii CDC 3083-94] Length = 914 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G ++V+ N A A + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|157157004|ref|YP_001463705.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli E24377A] gi|218554912|ref|YP_002387825.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli IAI1] gi|309796819|ref|ZP_07691222.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|157079034|gb|ABV18742.1| sensor histidine kinase/response regulator EvgS [Escherichia coli E24377A] gi|218361680|emb|CAQ99277.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli IAI1] gi|308119578|gb|EFO56840.1| response regulator receiver domain protein [Escherichia coli MS 145-7] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|157161843|ref|YP_001459161.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli HS] gi|157067523|gb|ABV06778.1| sensor histidine kinase/response regulator EvgS [Escherichia coli HS] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] Length = 225 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 55/114 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ ED++ + R + + L GYE +C +G + E + L+L D+ +P +DG++ Sbjct: 2 HILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ E + V+ ++ + + L+KPFH +L + L Sbjct: 62 ILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSL 115 >gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R] gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R] Length = 226 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QKIL+ +DD + L L G++ V+ +GA A + E L+L D+++P M+ Sbjct: 1 MSQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GI++ R R P + + T V L +S A ++KPF ++LV + Sbjct: 61 GIDICRLIRQESSVPIIMLTAKTDTVDVVLGLESGAD---DYVNKPFKAKELVARI 113 >gi|89902220|ref|YP_524691.1| Fis family two component sigma-54 specific transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346957|gb|ABD71160.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodoferax ferrireducens T118] Length = 445 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD D+R +AL ++ A +V + ++++DI +P MDG+ Sbjct: 6 QVLVVEDDPDVRLGCEQALQLEDIPASGLDSAEKALRRVTRDFPGVVVSDIRLPGMDGMA 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + +DPDL V+ ITG V+L + + KPF LV V R L Sbjct: 66 LLKELRAIDPDLPVVLITGHGDVSLAVQAMKDGAHDFIEKPFSPDYLVEVVRRAL 120 >gi|82544838|ref|YP_408785.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella boydii Sb227] gi|81246249|gb|ABB66957.1| putative sensor for regulator EvgA [Shigella boydii Sb227] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|82779496|ref|YP_405845.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella dysenteriae Sd197] gi|81243644|gb|ABB64354.1| putative sensor for regulator EvgA [Shigella dysenteriae Sd197] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|74312918|ref|YP_311337.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella sonnei Ss046] gi|73856395|gb|AAZ89102.1| putative sensor for regulator EvgA [Shigella sonnei Ss046] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|26988135|ref|NP_743560.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida KT2440] gi|24982866|gb|AAN67024.1|AE016331_1 C4-dicarboxylate transport transcriptional regulatory protein [Pseudomonas putida KT2440] Length = 444 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R + + L +G+ V + + + ++++D+ MP MD Sbjct: 1 MLNSVIVVDDEASIRTAVEQWLSLSGFSVELFARAEACLAHLPQHFPGVIISDVRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R DPDL V+ +TG V + ++ L KPF +DL+ + R L Sbjct: 61 GLQLLERLQANDPDLPVILLTGHGDVPMAVEAMRSGAYDFLEKPFTPQDLLGSLRRAL 118 >gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +ILL ED+ + RFL L G++V C +G + E + L+L D+++P ++ Sbjct: 1 MNGRILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPRLN 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+E+ R RA + P ++ IT +V + D+ A + KPF + +L+ + Sbjct: 61 GMEVCRRIRAAKSTP---IIMITARDSVFDRVMGLDNGAD---DYIVKPFAIEELLARIR 114 Query: 116 RLL 118 L Sbjct: 115 ALF 117 >gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ ++ L + L + GY V NGAS + + LL+ D ++P + G+E Sbjct: 2 RILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAYDLLILDWMLPHISGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ D V+F+T V + D+ A L KPF LR+L+ V LL Sbjct: 62 ICQQMRSHDATTPVLFLTAKDTVDDRVMGLDAGAD---DYLVKPFELRELLARVRALL 116 >gi|332093442|gb|EGI98500.1| sensor protein evgS [Shigella boydii 3594-74] Length = 1128 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 892 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 951 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 952 TRKLREQNSSLPIWGLTANA 971 >gi|323944868|gb|EGB40934.1| response regulator receiver domain-containing protein [Escherichia coli H120] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|323939088|gb|EGB35304.1| nitrogen regulation protein NR(I) [Escherichia coli E482] Length = 469 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL G + NGA + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGVGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08] Length = 227 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 6/105 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD D+R L L AGY+V S +G A + V LL+ D+VMP MDG+ L Sbjct: 7 VLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPVMDGLGL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFH 106 R + ++ +T + VA D A +A LSKPF Sbjct: 67 CRMLRAAGNAVPILLLTARSDVA---DCVAGLDAGADDYLSKPFE 108 >gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15] Length = 1166 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ +IL AED++ RR + + + G E+V +NGA A + EPF L+L DI MP M+ Sbjct: 811 LSGRILCAEDNEVNRRLVSLLVSRTGAELVHVSNGAEALELAIREPFDLILMDIQMPVMN 870 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + E + V+ +T D + L+KP + + R L++ Sbjct: 871 GRDATAALREAGVNTPVIALTANVMSEDIADYRLAGCNEHLAKPIDKQRFYETLGRYLSV 930 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AED+ + R+ + + L + G +VV+ G A + L+L D MP MDG++ Sbjct: 945 KVLVAEDNTENRQLVERMLRREGLDVVAVTGGEDAVRTALSDTVHLVLMDRHMPGMDGVD 1004 Query: 64 LAR 66 R Sbjct: 1005 ATR 1007 >gi|300820961|ref|ZP_07101111.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|331678363|ref|ZP_08379038.1| sensor protein EvgS [Escherichia coli H591] gi|300526714|gb|EFK47783.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|331074823|gb|EGI46143.1| sensor protein EvgS [Escherichia coli H591] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|301023646|ref|ZP_07187402.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|299880747|gb|EFI88958.1| response regulator receiver domain protein [Escherichia coli MS 196-1] Length = 1139 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 903 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 962 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 963 TRKLREQNSSLPIWGLTANA 982 >gi|284046821|ref|YP_003397161.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951042|gb|ADB53786.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 235 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+DD+RR + L +AG+ V NG A ++ L++ D+ MPE+DG + Sbjct: 5 EVLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLLKSATPDLIVLDVTMPELDGWQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLL 118 R +L ++ V+ +T A L+ A ++KPF ++L+ V LL Sbjct: 65 TLERIRDLT-EVPVLMLTARAG-ELDKVRGLKSGADDYVTKPFGRQELLARVEALL 118 >gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] Length = 237 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD+++++ + L KAG++V+ +NG A V+ E L++ D+++P MDG ++ Sbjct: 12 ILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLPGMDGYQI 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + DP + + I A + + D A + ++KPF + LV+ V L Sbjct: 72 C-KTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSAL 127 >gi|260845017|ref|YP_003222795.1| hybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA [Escherichia coli O103:H2 str. 12009] gi|257760164|dbj|BAI31661.1| hybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA [Escherichia coli O103:H2 str. 12009] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|260856479|ref|YP_003230370.1| hybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA [Escherichia coli O26:H11 str. 11368] gi|260869075|ref|YP_003235477.1| hybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA [Escherichia coli O111:H- str. 11128] gi|257755128|dbj|BAI26630.1| hybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA [Escherichia coli O26:H11 str. 11368] gi|257765431|dbj|BAI36926.1| hybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA [Escherichia coli O111:H- str. 11128] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|256017469|ref|ZP_05431334.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella sp. D9] gi|332278474|ref|ZP_08390887.1| sensor histidine kinase/response regulator EvgS [Shigella sp. D9] gi|332100826|gb|EGJ04172.1| sensor histidine kinase/response regulator EvgS [Shigella sp. D9] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601] gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601] Length = 230 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 42/63 (66%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD ++ + L GY++ NG A++ V+++ SL++ D++MPEMDG+E+ Sbjct: 4 ILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVMMPEMDGLEV 63 Query: 65 ARR 67 ++ Sbjct: 64 CKK 66 >gi|227887419|ref|ZP_04005224.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli 83972] gi|300983739|ref|ZP_07176720.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301049124|ref|ZP_07196105.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|227835769|gb|EEJ46235.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli 83972] gi|300299070|gb|EFJ55455.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300408468|gb|EFJ92006.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|307554418|gb|ADN47193.1| sensor histidine kinase/response regulator EvgS [Escherichia coli ABU 83972] gi|315293499|gb|EFU52851.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|324009213|gb|EGB78432.1| response regulator receiver domain protein [Escherichia coli MS 57-2] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|255604426|ref|XP_002538223.1| sensory transduction histidine kinase, putative [Ricinus communis] gi|223513219|gb|EEF24159.1| sensory transduction histidine kinase, putative [Ricinus communis] Length = 109 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 2/96 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62 ++L+A+DD +R +L L + GYE V +NG +A+ ++++ L+L D +MP +DG+ Sbjct: 6 RVLIADDDATIRLWLDSVLREWGYETVLADNGDAAWHLLQQDDSPELVLLDWLMPGLDGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 E+ RR + DP + ++ A D A +A Sbjct: 66 EVCRR-IKADPQKRFSYVIMLTARTTTEDFVAALDA 100 >gi|218696012|ref|YP_002403679.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli 55989] gi|293446742|ref|ZP_06663164.1| two-component system [Escherichia coli B088] gi|300948489|ref|ZP_07162586.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300956365|ref|ZP_07168659.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|218352744|emb|CAU98530.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli 55989] gi|291323572|gb|EFE63000.1| two-component system [Escherichia coli B088] gi|300316816|gb|EFJ66600.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300451998|gb|EFK15618.1| response regulator receiver domain protein [Escherichia coli MS 116-1] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|215487634|ref|YP_002330065.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli O127:H6 str. E2348/69] gi|215265706|emb|CAS10111.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli O127:H6 str. E2348/69] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|209919858|ref|YP_002293942.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli SE11] gi|300922025|ref|ZP_07138169.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|301328872|ref|ZP_07221910.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|209913117|dbj|BAG78191.1| two-component sensor kinase [Escherichia coli SE11] gi|300421596|gb|EFK04907.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300844746|gb|EFK72506.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|324016833|gb|EGB86052.1| response regulator receiver domain protein [Escherichia coli MS 117-3] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 224 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR P L + ++ D+ A ++KPFHL +++ + LL Sbjct: 62 VLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHLEEVLARIRALL 116 >gi|119489834|ref|ZP_01622589.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119454262|gb|EAW35413.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 506 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D + + +++ L GY+V + +G A +++ P L+L D++MPE+ G E Sbjct: 13 EILIIDDTPENLQLMVQLLTSVGYQVRAYISGNIALQGIKKTPPDLILLDVMMPEISGYE 72 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + ++ DP D+ V+FI+ + ++KPFH+ +++ V Sbjct: 73 VCQKLKS-DPETQDIPVIFISAMNTAIDKVKAFQVGGVDYITKPFHVEEVLARV 125 >gi|108757141|ref|YP_631748.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108461021|gb|ABF86206.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 474 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R+ L L + G++V NG + + +++TD+VMP++ G+E Sbjct: 3 KVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + +PD+ V+ IT V D+ ++KPF +L + V + Sbjct: 63 VLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAK 115 >gi|86158412|ref|YP_465197.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774923|gb|ABC81760.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 126 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD D+ + L GY V +G A D+V EE S++L D++MP MDG+ Sbjct: 7 VLVVDDDPDILDAICDILEGEGYRVARARHGLEALDRVAEEEPSIILLDLMMPVMDGLAF 66 Query: 65 A---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEVN 115 A R+ P + ++ I+ NP A A+ L+KPF + L+ +V Sbjct: 67 AQALRQRRNGAPRIPIVVISADG----NPQKAASVGAQGYLAKPFDIDALLAQVT 117 >gi|26248748|ref|NP_754788.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli CFT073] gi|26109154|gb|AAN81356.1|AE016764_38 Sensor protein evgS precursor [Escherichia coli CFT073] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|84623131|ref|YP_450503.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367071|dbj|BAE68229.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 463 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 55/117 (47%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ L + G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 8 LVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 67 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 P V IT F ++ L ++ +SKP + L V L + N Sbjct: 68 TEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 124 >gi|16130302|ref|NP_416871.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli str. K-12 substr. MG1655] gi|89109190|ref|AP_002970.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli str. K-12 substr. W3110] gi|170019338|ref|YP_001724292.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli ATCC 8739] gi|253772721|ref|YP_003035552.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162363|ref|YP_003045471.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli B str. REL606] gi|256021930|ref|ZP_05435795.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia sp. 4_1_40B] gi|301647536|ref|ZP_07247336.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307139018|ref|ZP_07498374.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli H736] gi|2507377|sp|P30855|EVGS_ECOLI RecName: Full=Sensor protein evgS; Flags: Precursor gi|1788713|gb|AAC75429.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli str. K-12 substr. MG1655] gi|1799781|dbj|BAA16241.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli str. K12 substr. W3110] gi|169754266|gb|ACA76965.1| Hpt sensor hybrid histidine kinase [Escherichia coli ATCC 8739] gi|242377988|emb|CAQ32758.1| EvgS sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253323765|gb|ACT28367.1| Hpt sensor hybrid histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974264|gb|ACT39935.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli B str. REL606] gi|253978431|gb|ACT44101.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli BL21(DE3)] gi|301074332|gb|EFK89138.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|315615624|gb|EFU96256.1| sensor protein evgS [Escherichia coli 3431] gi|323941123|gb|EGB37309.1| response regulator receiver domain-containing protein [Escherichia coli E482] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|27065585|pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk gi|27065589|pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure At Ph 8.0 In The Apo-Form gi|27065629|pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0 In Complex With Mn2+ gi|27065631|pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0 In Complex With Mn2+ gi|27065632|pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5 In Complex With Mg2+ Length = 124 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ ED++ + L GYE + G SA RE L+L DI +PE+ G Sbjct: 1 TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISG 60 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +E+ + E D DL + + A A+ D + +SKP + + + RLL Sbjct: 61 LEVTKWLKE-DDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 119 >gi|146276073|ref|YP_001166232.1| histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145554314|gb|ABP68927.1| histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 868 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 M ++ L+ +D R L + L G EV C +G+ A ++ +P + LLLTD MPE+ Sbjct: 592 MVRRALVVDDQFINRTILERQLAPCGIEVRLCRSGSEALSELISDPDYDLLLTDHEMPEL 651 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG+ LA R + ++ +T A + A A VL KP DL + L Sbjct: 652 DGLALAERVRACGSSMPILLLTSNPA-GVRDHPAAALLAGVLQKPLLRSDLYRRLQSL 708 >gi|324117708|gb|EGC11607.1| response regulator receiver domain-containing protein [Escherichia coli E1167] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|315919193|ref|ZP_07915433.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693068|gb|EFS29903.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1409 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ + Y V+ +G A + P +++D++MP MDG+EL Sbjct: 1158 ILVVEDNVDMRGY-IRSILREQYNVLEAADGEEALHILNSNPVDFIISDLMMPVMDGVEL 1216 Query: 65 ARRATE 70 +RR + Sbjct: 1217 SRRVKD 1222 >gi|302185549|ref|ZP_07262222.1| response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt [Pseudomonas syringae pv. syringae 642] Length = 789 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDGI Sbjct: 666 KRVLVVDDSLTVRELERKLLLSRGYDVSVAVDGMDGWNALRAEDFDLLITDIDMPRMDGI 725 Query: 63 ELA---RRATELDPDLKVMFIT 81 EL RR T L L VM ++ Sbjct: 726 ELVTLLRRDTRLQ-SLPVMVVS 746 >gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++LL +D+ +R + + L ++G+ V +N ++ +++ L+++DI+MP++D Sbjct: 1 MSAQLLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDIMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G + ++ + DP L + + A + D A V LSKPF +L+ +N L Sbjct: 61 GYQFLKQLRD-DPRLASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|224540766|ref|ZP_03681305.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM 14838] gi|224517633|gb|EEF86738.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM 14838] Length = 1377 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ EDD+++R ++ + L Y + C+NG A + L+++D++MPEMDG+ Sbjct: 1135 RHVLVVEDDEEIRHYICRELSNDFY-MTECSNGKEALASILSHTPDLIISDVMMPEMDGL 1193 Query: 63 ELARR 67 L R+ Sbjct: 1194 TLCRK 1198 >gi|224026515|ref|ZP_03644881.1| hypothetical protein BACCOPRO_03272 [Bacteroides coprophilus DSM 18228] gi|224019751|gb|EEF77749.1| hypothetical protein BACCOPRO_03272 [Bacteroides coprophilus DSM 18228] Length = 232 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LL EDD+++ + L GYEV++ NG + +E ++++DI MP M+G Sbjct: 3 RLLLVEDDNNLSYIVQTGLQDIIGGYEVITACNGKEGLEAWKEHHPDIIISDIDMPVMNG 62 Query: 62 IELARRATELDPDLKVMFITGFAA 85 E+ R E D D ++F + + Sbjct: 63 FEMVRLIRETDGDTPILFASALTS 86 >gi|153833879|ref|ZP_01986546.1| response regulator [Vibrio harveyi HY01] gi|156975360|ref|YP_001446267.1| hypothetical protein VIBHAR_03091 [Vibrio harveyi ATCC BAA-1116] gi|148869821|gb|EDL68795.1| response regulator [Vibrio harveyi HY01] gi|156526954|gb|ABU72040.1| hypothetical protein VIBHAR_03091 [Vibrio harveyi ATCC BAA-1116] Length = 368 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +NQK+++ DDD + R + A L G++VV NG A ++RE L+L D+ MP + Sbjct: 17 VNQKLIMLVDDDPIFRKVTSAYLESQGFKVVEAENGLEALQQLRECHPDLVLCDLSMPVL 76 Query: 60 DGIELARRATELDPDLKVMFITG 82 DGIE + P + ++ ++G Sbjct: 77 DGIEFVEEVSLEYPSMPLIVVSG 99 >gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1382 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+LL ED++ R I+ L G V NG +VR +PF L+L DI MP MDG Sbjct: 945 GRKVLLVEDNEINRDLAIELLSDLGLLVSIAENGQDGVARVRADPFDLVLMDIQMPVMDG 1004 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + RA E DL ++ +T A S ++KP + L + + R + Sbjct: 1005 LTATKLIRADERFRDLPIIAMTAHAMSGDRERSLEAGMNDHITKPINPGHLTDTLIRWMP 1064 Query: 120 IK 121 ++ Sbjct: 1065 VR 1066 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVM 56 ++++L+ +D D R L+ L G ++ +G A + E PF L+L D M Sbjct: 797 SKRVLIVDDSDSARDVLLAMLCANGINAIATKSGEEAMAVLAEASQAGTPFDLVLMDWRM 856 Query: 57 PEMDGIELARR 67 P MDGIE + R Sbjct: 857 PGMDGIEASHR 867 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 +L DD+ L+ + + YEV++ G + L+L D++MP +DG E+ Sbjct: 1226 ILVIDDEPSNIDLLADIFSSTYEVLAAEEGMGGLEIAATSMPDLILLDVMMPGIDGYEVC 1285 Query: 66 RR--ATELDPDLKVMFITGFA 84 RR A L + V+FITG Sbjct: 1286 RRLKAEPLTSAIPVIFITGLG 1306 >gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 231 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLASALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIA 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR P L + ++ D+ A +SKPFHL +++ + LL Sbjct: 62 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGAD---DYVSKPFHLEEVLARIRALL 116 >gi|91211713|ref|YP_541699.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli UTI89] gi|117624588|ref|YP_853501.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli APEC O1] gi|218559325|ref|YP_002392238.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli S88] gi|237704895|ref|ZP_04535376.1| sensor protein EvgS [Escherichia sp. 3_2_53FAA] gi|306814536|ref|ZP_07448698.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli NC101] gi|91073287|gb|ABE08168.1| sensor protein EvgS precursor [Escherichia coli UTI89] gi|115513712|gb|ABJ01787.1| sensor protein EvgS precursor [Escherichia coli APEC O1] gi|218366094|emb|CAR03839.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli S88] gi|226901261|gb|EEH87520.1| sensor protein EvgS [Escherichia sp. 3_2_53FAA] gi|294491075|gb|ADE89831.1| sensor histidine kinase/response regulator EvgS [Escherichia coli IHE3034] gi|305851930|gb|EFM52382.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli NC101] gi|307626053|gb|ADN70357.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli UM146] gi|315288206|gb|EFU47606.1| response regulator receiver domain protein [Escherichia coli MS 110-3] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis] Length = 283 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 15/120 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+ Sbjct: 51 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 110 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+AR + D+ ++ +T + L D ++KPF R+LV V Sbjct: 111 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADD-------YVTKPFSNRELVARVK 162 >gi|77918380|ref|YP_356195.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544463|gb|ABA88025.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 121 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 17/127 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDG 61 +KIL+ +D +R L +LG + +++ +G A + R E L++ DI+MP MDG Sbjct: 2 KKILVVDDQPTIRALLQVSLGASDRKIILAESGEQALEFARRESPDLVIMDIMMPGGMDG 61 Query: 62 IELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 E + R+ PD V+ +T AV +N D LSKPF L DL Sbjct: 62 FETVQKLRSDPAIPDCPVLILTAKDQQSERGRAVEMNVDG-------YLSKPFRLDDLRG 114 Query: 113 EVNRLLT 119 +V +L+ Sbjct: 115 QVGKLIA 121 >gi|28868135|ref|NP_790754.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato str. DC3000] gi|213970196|ref|ZP_03398327.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato T1] gi|302060005|ref|ZP_07251546.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato K40] gi|302130895|ref|ZP_07256885.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851372|gb|AAO54449.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato str. DC3000] gi|213925077|gb|EEB58641.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato T1] gi|331018817|gb|EGH98873.1| chemotaxis protein CheY [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 122 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + AL AGY+V+ +G A K+ + L+++D+ MP MD Sbjct: 1 MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLSGQKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + +L ++ +T + + + A + KPF ++ V++L+ Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 >gi|13591555|dbj|BAB40947.1| histidine kinase [Magnaporthe grisea] Length = 1307 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ +R +K L K + V +NGA A + V++ + ++L D+ MP M G E Sbjct: 1104 EILLAEDNTVNQRLAVKILEKYNHVVTVVSNGAEALEAVKDNKYDVILMDVQMPVMGGFE 1163 Query: 64 LARRATELDPDLKVMF--ITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + E + L I A A+ D A++ LSKP L+ + + Sbjct: 1164 ATAKIREYERSLGTQRTPIIALTAHAMMGDREKCIEAQMDEYLSKPLQQNHLIQTILKCA 1223 Query: 119 TI 120 T+ Sbjct: 1224 TL 1225 >gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium D16] gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium D16] Length = 226 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 60/115 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++ + + L GY V C +G A++ + E + L + D+ +P MDG++ Sbjct: 2 RILIVEDEAELCDTIAEGLELDGYAVDRCYDGKVAHELLAVETYDLAVLDLNLPGMDGMD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R +++ +LKV+ ++ +V+ L+KPF +L + LL Sbjct: 62 VLREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLL 116 >gi|238797459|ref|ZP_04640958.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969] gi|238718730|gb|EEQ10547.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969] Length = 1001 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 49/107 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY+V++ N+G A + ++LTD+ MP MDG Sbjct: 879 QILVVDDHPINRRLLADQLSALGYQVITANDGLDALAVLSANNVDIVLTDVNMPNMDGYR 938 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L +R +L+ V+ +T A LSKP L L Sbjct: 939 LTQRLRQLNHHFPVIGVTANALAESKQRCIEAGMDNCLSKPVTLDTL 985 >gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2] gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2] Length = 948 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMDG E Sbjct: 3 RILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + D D+ ++ +T L KPF +LV V LL Sbjct: 63 LCRELRDYD-DVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALL 116 >gi|222530334|ref|YP_002574216.1| AraC family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457181|gb|ACM61443.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor bescii DSM 6725] Length = 252 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKAL--GKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMP 57 M+ K+++ ED+ ++R+ L K G+EVV NG A D + + ++ DI MP Sbjct: 1 MSYKMIIVEDESEIRQGLFTCFPWNKLGFEVVGLFENGKQALDYILQNKVDVVFCDIKMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGF 83 M GI+LAR + +KV+FI+G+ Sbjct: 61 VMSGIDLARVLFLNNIPVKVVFISGY 86 >gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1831 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+D + + L AG EV + NG A D + +L DI MP MDG E Sbjct: 1406 VLLVEDNDINQEIATELLNMAGIEVSTACNGQEAVDMAIANSYDAILMDIQMPIMDGYE- 1464 Query: 65 ARRATELDPDLKVMFITGFAAVALNPD 91 A R L+PD +++ I A A++ D Sbjct: 1465 ATRNIRLNPDKQLIPIIAMTANAMSGD 1491 >gi|188494301|ref|ZP_03001571.1| sensor histidine kinase/response regulator EvgS [Escherichia coli 53638] gi|188489500|gb|EDU64603.1| sensor histidine kinase/response regulator EvgS [Escherichia coli 53638] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 227 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL +D+ +R + L +G+ V +N + ++ +++ L+++DI+MPE+D Sbjct: 1 MTGHLLLVDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELLQQRIPDLVISDIMMPEVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G + + E DP + I A + D NA V LSKPF +LV V L Sbjct: 61 GYQFLAQLRE-DPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNL 119 Query: 118 LTIK 121 LT K Sbjct: 120 LTRK 123 >gi|108759061|ref|YP_632841.1| response regulator [Myxococcus xanthus DK 1622] gi|108462941|gb|ABF88126.1| response regulator [Myxococcus xanthus DK 1622] Length = 371 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 8/116 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + L + L GY+VV+ ++ A A RE F ++LTD +MP ++GIE Sbjct: 3 RILVVDDDVLILAALSRILQAEGYDVVTHSDPAVA---AREVGFQVVLTDFMMPYLNGIE 59 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 L E +P + +T AA S A +V L KP+ L DL N V + Sbjct: 60 LLSALREKNPKAVRLMLT--AAADFRTASEAVNRGEVFRLLGKPWSLSDLTNSVRQ 113 >gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 224 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR P L + ++ D+ A ++KPFHL +++ + LL Sbjct: 62 VLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHLEEVLARIRALL 116 >gi|46204038|ref|ZP_00050590.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 254 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59 +++L+ ED+ ++ RF + L GY N A D++ + F + +D+VMP M Sbjct: 122 GRRVLVVEDNVEVGRFATQILQDLGYATEWATNAEEALDRLGGDQAEFDAVFSDVVMPGM 181 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI LA+ P L V+ +G++ V S+ ++L KP+ L + R+ Sbjct: 182 GGIALAKALRRRFPSLPVLLTSGYSHVLAEEGSH---GFELLHKPYSADQLSRMLARI 236 >gi|323177504|gb|EFZ63092.1| sensor protein evgS [Escherichia coli 1180] Length = 1128 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 892 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 951 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 952 TRKLREQNSSLPIWGLTANA 971 >gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 241 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 61/115 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R L +L AG++V + +G+SA+ + + L++ D+++P+MDG Sbjct: 16 KLLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVMLPDMDGFT 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+F+T + ++KPF L ++V + +L Sbjct: 76 VTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAIL 130 >gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ ED+ + RF+ L GY+V C +G KV E L+L DI++P ++G Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62 Query: 62 IELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 IE+ R+ + ++ ++ +T + + DS A ++KPF + +L+ + Sbjct: 63 IEICRKIRQ-HSNVPLIMVTAKDDIPDRVMGLDSGAD---DYVTKPFAIEELLARI 114 >gi|331669116|ref|ZP_08369964.1| sensor protein EvgS [Escherichia coli TA271] gi|331064310|gb|EGI36221.1| sensor protein EvgS [Escherichia coli TA271] Length = 1147 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 911 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 970 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 971 TRKLREQNSSLPIWGLTANA 990 >gi|331663934|ref|ZP_08364844.1| sensor protein EvgS [Escherichia coli TA143] gi|331059733|gb|EGI31710.1| sensor protein EvgS [Escherichia coli TA143] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|308069148|ref|YP_003870753.1| response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Paenibacillus polymyxa E681] gi|305858427|gb|ADM70215.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Paenibacillus polymyxa E681] Length = 448 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 28 EVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 EVV +NG A D ++ +P L+LTD+ MP M GIEL R A +L P+L ++ +T Sbjct: 9 EVVGEASNGLKALDFLKSQPVDLMLTDLAMPVMSGIELMRVARQLYPELHIVVLT 63 >gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 250 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56 ++L+ ED++ +R L+ AL GYEVV+ +G A + +R E F LL+ D+++ Sbjct: 20 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P+++G+++ R + ++ ++ + L+KPF +R++V Sbjct: 80 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 139 Query: 117 LL 118 LL Sbjct: 140 LL 141 >gi|255323055|ref|ZP_05364191.1| DNA-binding response regulator [Campylobacter showae RM3277] gi|255299917|gb|EET79198.1| DNA-binding response regulator [Campylobacter showae RM3277] Length = 225 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 47/80 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+D +R + + G +V+S +NG K ++ +++ DI+MP MDG+E+ Sbjct: 9 LLLVEDEDGIRESMQEVFGGVFQKVISASNGDEGLKKFKKFSPDIVIADIMMPIMDGLEM 68 Query: 65 ARRATELDPDLKVMFITGFA 84 +R+ E + V+ ++ ++ Sbjct: 69 SRQIKEFSKNTPVVILSAYS 88 >gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY+V + +G A D + L+ D+ MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR DL ++ +T V+ L KPF L +L+ + LL Sbjct: 62 VCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALL 116 >gi|226499102|ref|NP_001151536.1| two-component response regulator-like PRR95 [Zea mays] gi|195647486|gb|ACG43211.1| two-component response regulator-like PRR95 [Zea mays] Length = 630 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPE 58 M ++LLAE DD R + L K GY V + ++G A+D ++E+ F+ L+LT++ +P Sbjct: 42 MPVRVLLAEGDDSTRHVISALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPL 101 Query: 59 MDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 M G L E D ++ V+ ++ +V++ A L KP +L N Sbjct: 102 MSGFLLLSTIMEHDASKNIPVIMMSSHDSVSMVFKCMLKGAADFLVKPLRKNELRN 157 >gi|193062425|ref|ZP_03043520.1| sensor histidine kinase/response regulator EvgS [Escherichia coli E22] gi|194428587|ref|ZP_03061125.1| sensor histidine kinase/response regulator EvgS [Escherichia coli B171] gi|192932091|gb|EDV84690.1| sensor histidine kinase/response regulator EvgS [Escherichia coli E22] gi|194413310|gb|EDX29594.1| sensor histidine kinase/response regulator EvgS [Escherichia coli B171] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|188575732|ref|YP_001912661.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520184|gb|ACD58129.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 466 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 55/117 (47%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L+ L + G + + N A A + + P+ L LTD+ +P+ +GIEL Sbjct: 11 LVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELV 70 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 P V IT F ++ L ++ +SKP + L V L + N Sbjct: 71 TEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNN 127 >gi|182415918|ref|YP_001820984.1| response regulator receiver protein [Opitutus terrae PB90-1] gi|177843132|gb|ACB77384.1| response regulator receiver protein [Opitutus terrae PB90-1] Length = 126 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 9/122 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +DD ++ + + L G V +G A + E F L++TD++MPE DGI Sbjct: 4 RSILIVDDDAELCEVMKQVLEDHGDRVTCAADGVQASKAIAEAGFDLVITDLIMPEKDGI 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRDLVNEVNR 116 +L P + V+ ++G V P + A+ VL KPF + L++ V + Sbjct: 64 QLMNEIRRKYPKIPVVAMSGGGHV---PREQYLRIARGLGAHAVLEKPFANQTLIDAVEQ 120 Query: 117 LL 118 L Sbjct: 121 TL 122 >gi|188586455|ref|YP_001918000.1| PAS/PAC sensor hybrid histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351142|gb|ACB85412.1| PAS/PAC sensor hybrid histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 482 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 3/112 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMP-E 58 N+K+L+ +D D +RR + L G++V NG A + K + F ++ D+ +P Sbjct: 362 NKKVLIMDDKDKVRRVFYELLTSMGFDVTCTRNGEEAVNIYKQANKSFDIVFLDLTVPGG 421 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 M G E ++ +DP + + +G++ ++ + + A ++KPF + +L Sbjct: 422 MGGKETIKKLKAMDPSVTAIAASGYSEDPIHLNYSDYGFAAAITKPFSMAEL 473 >gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1245 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+D ++ + L AG EV +NG +A + + F +L DI MP MDG E Sbjct: 987 RVLLVEDNDMNQQVACELLTSAGIEVTVADNGHTAVELAAQHRFDTVLMDIQMPVMDGYE 1046 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +R RA + DL ++ +T A +SKP + ++L + + R Sbjct: 1047 ASRLIRADQACRDLPIIAMTAHAMPQDRQRCLESGMNDYVSKPINPQELYSTLER 1101 >gi|160899261|ref|YP_001564843.1| response regulator receiver protein [Delftia acidovorans SPH-1] gi|160364845|gb|ABX36458.1| response regulator receiver protein [Delftia acidovorans SPH-1] Length = 122 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL ED+ D+R + + V SC A + +PF ++++D+ +P + G + Sbjct: 2 RILYVEDNADLRETIGLLMESESRFVTSCATAEQALELDAAQPFDVVVSDVSLPGLSGTD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LAR+ E D ++ +G+ + P + P + + L KPF + DL Sbjct: 62 LARQLLEADAQRWIILCSGY-DLGPYPTAWGP-HVRTLLKPFEIEDL 106 >gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ ++ +L + L GY V +G A + RE P L++ D+++P +DG+E+ Sbjct: 4 ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGIDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 ARR D+ ++ +T AV PD A A L KPF +L+ + Sbjct: 64 ARR-LRAASDVPIIMLTARDAV---PDRVAGLEAGADDYLIKPFAFEELLARIR 113 >gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 15/122 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD ++R + AL +AGY VV +G A + E L++ D+ MP +DG E Sbjct: 2 KILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGFE 61 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNA-----KVLSKPFHLRDLVNEVNR 116 + R RA + P VM +T N + + + L+KPF R L V Sbjct: 62 VCRRIRAQSIVP---VMLLT-----VRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRA 113 Query: 117 LL 118 LL Sbjct: 114 LL 115 >gi|77460070|ref|YP_349577.1| response regulator receiver (CheY) modulated Serine phosphatase [Pseudomonas fluorescens Pf0-1] gi|77384073|gb|ABA75586.1| putative response regulator [Pseudomonas fluorescens Pf0-1] Length = 412 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+ +R L L +G+ V+ +NG ++ L++ D+ MP+M G+EL Sbjct: 27 LLIIDDDEVVRASLAAYLEDSGFSVLQASNGQQGLQVFEQDTPDLVICDLRMPQMGGLEL 86 Query: 65 ARRATELDPDLKVMFITG 82 R+ TE P V+ ++G Sbjct: 87 IRQVTERSPQTPVIVVSG 104 >gi|186685663|ref|YP_001868859.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468115|gb|ACC83916.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 797 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 8/122 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+D +R L K Y+V+ ++G A Y + ++E S++L D++MP MDG Sbjct: 679 ILVVDDEDSIREVTQTWLEKNAYKVIVASDGIDAIALYTEYQQE-ISVVLVDMMMPNMDG 737 Query: 62 IELARRATELDPDLKVMFITGFAA--VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +++P++K++ ++G A+ + N+ K +LSKP+ DL+ + ++ Sbjct: 738 PTTISVLKKINPEIKIIGVSGLASNHEMIKILGNSVKT--LLSKPYTSSDLLRNLQMVIN 795 Query: 120 IK 121 K Sbjct: 796 TK 797 >gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 939 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + + L G+ V NG +A D + +PF L+L D+ MPEM G E Sbjct: 818 RILLAEDNPINQLVAQELLESRGHSVTVVENGRAALDALSLKPFDLVLMDVRMPEMGGEE 877 Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR +D + ++ +T +A A L+KP L +L + R+ Sbjct: 878 ATRRIRAGDIAGVDSGIPIIALTAYALEGDRERFLAAGMTDYLAKPITLEELDRVLERI 936 >gi|330960755|gb|EGH61015.1| chemotaxis protein CheY [Pseudomonas syringae pv. maculicola str. ES4326] Length = 148 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + AL AGY+V+ ++G A K+ + L+++D+ MP MD Sbjct: 1 MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEASDGKDALGKLTGQKVHLIISDLNMPNMD 60 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + +L ++ +T + + + A + KPF ++ V++L+ Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 >gi|325168516|ref|YP_004280306.1| response regulator receiver protein [Agrobacterium sp. H13-3] gi|325064239|gb|ADY67928.1| response regulator receiver protein [Agrobacterium sp. H13-3] Length = 123 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ ILL + D R + + L GY V+ + A A + + +L+TDI + + G Sbjct: 7 SETILLVDADPLQRSTVGQYLRDCGYRVIEATDAAEAITALSHQGIEILVTDIALRDEPG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +L+ +A E+ PDL+V+ +T +A + ++ L P+H + LV + RL Sbjct: 67 FQLSAKAREIRPDLEVV-VTHWAERTAKIAGDLCEDGP-LDHPYHPQQLVERIKRL 120 >gi|323967797|gb|EGB63209.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|327252012|gb|EGE63684.1| sensor protein evgS [Escherichia coli STEC_7v] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|312128257|ref|YP_003993131.1| two component transcriptional regulator, arac family [Caldicellulosiruptor hydrothermalis 108] gi|311778276|gb|ADQ07762.1| two component transcriptional regulator, AraC family [Caldicellulosiruptor hydrothermalis 108] Length = 520 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%) Query: 4 KILLAEDDDDMRRFL-----IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+L+ ED+ R L LG E+ S NG A + V+ +LL D+ MP Sbjct: 3 KLLIVEDERITRESLETLIPWNELGIG--EIKSAKNGQEALEIVKSYTPDILLCDVRMPR 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE ++R + P K++FI+G+A Sbjct: 61 MDGIEFSKRLKNIFPKCKIVFISGYA 86 >gi|301023585|ref|ZP_07187348.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300396952|gb|EFJ80490.1| response regulator receiver domain protein [Escherichia coli MS 69-1] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|293405824|ref|ZP_06649816.1| hybrid sensory histidine kinase [Escherichia coli FVEC1412] gi|298381573|ref|ZP_06991172.1| hypothetical protein ECFG_01307 [Escherichia coli FVEC1302] gi|291428032|gb|EFF01059.1| hybrid sensory histidine kinase [Escherichia coli FVEC1412] gi|298279015|gb|EFI20529.1| hypothetical protein ECFG_01307 [Escherichia coli FVEC1302] Length = 1127 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 241 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ ED+ + R L L GYEV+ ++G Y+ + F L+L D+++P M+ Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVN 115 G E+ + V+ +T A N + + K ++KPF + +L+ V Sbjct: 61 GFEIMSKLRSEGVKTPVIILT-----AKNAEEEVVQGLKSGADDYITKPFGVAELLARVA 115 Query: 116 RLL 118 +L Sbjct: 116 AVL 118 >gi|258513743|ref|YP_003189965.1| two component transcriptional regulator, LytTR family [Desulfotomaculum acetoxidans DSM 771] gi|257777448|gb|ACV61342.1| two component transcriptional regulator, LytTR family [Desulfotomaculum acetoxidans DSM 771] Length = 242 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 4/107 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALG-KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 + ++L+ ED++D+R + + +A + VV C NG D V + +++L DI +P Sbjct: 2 LEARVLIVEDNEDVREHIKTIINTQADFTVVGECGNGNEVLDLVEKYHPNIVLLDIEIPS 61 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 GI++A+ EL P + ++FITG + L + K+ + KPF Sbjct: 62 RTGIDVAKDLAELKPGIFLIFITGHSEFCLT--AFEIKSLDYILKPF 106 >gi|220917674|ref|YP_002492978.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955528|gb|ACL65912.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 122 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R L AGYEV+ +G A K+ P L+LTD+ MP +D Sbjct: 1 MARCVLVVDDSASVRLAERVVLTGAGYEVLEAVDGQDALAKLAARPVQLVLTDLNMPNLD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ L RA DP + V+ +T + A + A + KPF L+ RL Sbjct: 61 GVGLI-RAVRTDPAHRLTPVVMVTTESEQARKLEGKAAGATGWIVKPFTPEQLLAVAARL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151279945|gb|ABR88355.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 10/124 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D+R L L K G ++ S N A A D +++ ++L+LTD+ +P+ GIE Sbjct: 5 RILIVDDEADLRELLEITLVKMGLDIDSAQNLAVARDYLQQHEYALVLTDMRLPDGLGIE 64 Query: 64 LARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + T + V IT F A VAL + LSKP L L V L Sbjct: 65 LVQEITAQYKNTPVAVITAFGSADNAVVALKAGAF-----DYLSKPVGLEQLRVMVRSAL 119 Query: 119 TIKN 122 I Sbjct: 120 RISQ 123 >gi|197118798|ref|YP_002139225.1| PAC domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088158|gb|ACH39429.1| sensor histidine kinase response regulator, PAC domain-containing protein [Geobacter bemidjiensis Bem] Length = 1023 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMDGI 62 +LLA+D++ +R + L G+ V++ +G +A + K + E ++ D+ MPE+DG Sbjct: 894 VLLADDEESIRALGQEMLETLGFRVLTACDGRAAVELFKEKREEIVCVVLDLTMPELDGE 953 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + E++P ++V+ +G+ + ++ + V+ KP+ L ++ ++ ++L Sbjct: 954 QAFTVLREMEPGVRVILSSGYNELEVSRKFEGCGVSGVMQKPYKLAEMSRKLRQIL 1009 >gi|119486065|ref|ZP_01620127.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119456840|gb|EAW37968.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 479 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D D R L L K GY+V NG A + L+L DI+MPEM+G E+ Sbjct: 16 IVVVDDTPDNLRLLGNILRKEGYKVRLIPNGELALSGIELLRPDLILLDIMMPEMNGYEV 75 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +A E D+ V+FI+ V+ + ++KPF +++++ V L I Sbjct: 76 CQHLKAREHSRDVPVIFISAIDEVSDKVKAFEAGGVDYITKPFQVQEVLVRVETHLKI 133 >gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1323 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ R +++ L +G + + NG A ++V + F L+L DI MP MDG Sbjct: 964 RVLLVEDNAINREVVLELLNNSGLVIETAVNGQEALERVSQHAFDLILMDIQMPLMDGYS 1023 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKP 104 A RA P + + I A A D A ++A + ++KP Sbjct: 1024 -ATRAIRALPGWEQVPILALTASAFEEDRKACESAGMNDFIAKP 1066 >gi|115378563|ref|ZP_01465718.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|310820747|ref|YP_003953105.1| response regulator receiver protein [Stigmatella aurantiaca DW4/3-1] gi|115364435|gb|EAU63515.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|309393819|gb|ADO71278.1| Response regulator receiver protein [Stigmatella aurantiaca DW4/3-1] Length = 127 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ D+ + L + GY+V +C NG A + + L + DI+MP ++G Sbjct: 2 KTILVVDDEFDIAEAVKAILEEDGYQVYACGNGWEALKCLNDLKPDLAILDIMMPRLNGY 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RA P + + +A+ S+ + L KPF L DL+ +V++L+ Sbjct: 62 E-TLRALRQRPAFAQLPVLLMSAIVPEVKSHEHSWSGFLKKPFSLGDLLKQVHQLV 116 >gi|39952003|ref|XP_363718.1| hypothetical protein MGG_11174 [Magnaporthe oryzae 70-15] gi|145020511|gb|EDK04640.1| hypothetical protein MGG_11174 [Magnaporthe oryzae 70-15] Length = 1307 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ +R +K L K + V +NGA A + V++ + ++L D+ MP M G E Sbjct: 1104 EILLAEDNTVNQRLAVKILEKYNHVVTVVSNGAEALEAVKDNKYDVILMDVQMPVMGGFE 1163 Query: 64 LARRATELDPDLKVMF--ITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + E + L I A A+ D A++ LSKP L+ + + Sbjct: 1164 ATAKIREYERSLGTQRTPIIALTAHAMMGDREKCIEAQMDEYLSKPLQQNHLIQTILKCA 1223 Query: 119 TI 120 T+ Sbjct: 1224 TL 1225 >gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8] gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8] gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62] gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 15/120 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+AR + D+ ++ +T + L D ++KPF R+LV V Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADD-------YVTKPFSNRELVARVK 113 >gi|85059559|ref|YP_455261.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Sodalis glossinidius str. 'morsitans'] gi|84780079|dbj|BAE74856.1| capsular synthesis sensor protein RcsC [Sodalis glossinidius str. 'morsitans'] Length = 958 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 12/112 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+V++ N+G A + + + ++L+D+ MP MDG + Sbjct: 829 ILVVDDHPINRRLLADQLGSLGYQVITANDGLDALNVISRQAVDIILSDVNMPNMDGYQF 888 Query: 65 A---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 A R L P + G A AL + +A + LSKP L L Sbjct: 889 AHALRTQGRLTP------VIGVTANALAEEKQRCLDAGMDNCLSKPVTLEVL 934 >gi|216554|dbj|BAA03108.1| EvgS [Escherichia coli] Length = 1197 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|94309410|ref|YP_582620.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353262|gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system with Rmet_0464 [Cupriavidus metallidurans CH34] Length = 229 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDDVLADGLTRSLRQSGYAVDHVANGVEADSALSTQSFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R + V+ +T +V ++KPF L +L V L+ Sbjct: 62 VLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALV 116 >gi|126172338|ref|YP_001048487.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella baltica OS155] gi|125995543|gb|ABN59618.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS155] Length = 476 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V +++R F LL+ DI +P GIE Sbjct: 33 VLIVDDEPGMRSFLNKALSKK-FALVETAGSIEDAEQLRSRCHFDLLIVDIRLPGRSGIE 91 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 92 WHEALDEQGRRSDIIFMTGYADMEVAITALRAGASDFIMKPFHLEQMMTAVDRCI 146 >gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 246 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R L ++L GYEV + +G +A + V + +++ D++MP MDG+E Sbjct: 2 RVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR D+ V+ +T +A L KPF L +L + L+ Sbjct: 62 TCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALI 116 >gi|332186360|ref|ZP_08388105.1| response regulator [Sphingomonas sp. S17] gi|332013728|gb|EGI55788.1| response regulator [Sphingomonas sp. S17] Length = 108 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Query: 26 GYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MDGIELARRATELDPDLKVMFITGF 83 GY + +GA+ ++ + LL++D+ +P M+G ++A A PDLKV+FITGF Sbjct: 11 GYTAIEAADGAAGLSVLQSDVRIDLLVSDVGLPGGMNGRQMADAARVTRPDLKVLFITGF 70 Query: 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A A + V++KPF + + + L+ Sbjct: 71 AQNAAVGNGQLEPGMHVMTKPFAMEAMATRIKALI 105 >gi|330966478|gb|EGH66738.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 691 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + G+ + + S ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDEPSVRMLVAEVITGLGFNCLEAADAQSGLQILQSDARIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKSSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 228 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 15/127 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ +R ++ L K GYEV +N AY+ ++ LL+ DI+M M+G+ Sbjct: 2 KHILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEVDLLVLDIMMRGMNGL 61 Query: 63 ELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +L ++ + ++ ++F++ + + L D L+KPF +R+LV + Sbjct: 62 DLCKKV-RMTSEVPIIFVSARSEELDRILGLELGADD-------YLAKPFSVRELVVRIK 113 Query: 116 RLLTIKN 122 +L N Sbjct: 114 NILRRTN 120 >gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220] gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220] Length = 928 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 807 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 866 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 867 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 909 >gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 251 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ +R L AL GY+V + G A V L+L D+ +P++ G E Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + V+F+TG V ++KPF L+++ V LL Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALL 142 >gi|239787599|emb|CAX84067.1| similar to regulator protein PilR [uncultured bacterium] Length = 270 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 44/79 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD+ R +L+ L +A + V+ ++G D P L++TDI MP MDGI+ Sbjct: 3 QILVVDDDEIFRFYLVTILKQAEHTVLEASDGRMGLDLFVSSPVDLIITDIFMPRMDGID 62 Query: 64 LARRATELDPDLKVMFITG 82 L P KV+ I+G Sbjct: 63 LLAALLCGWPCAKVIAISG 81 >gi|229523745|ref|ZP_04413150.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio cholerae bv. albensis VL426] gi|229337326|gb|EEO02343.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio cholerae bv. albensis VL426] Length = 868 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 15/129 (11%) Query: 3 QKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 Q +L DDD + R LIK L + G ++G A++K+ + P + LL+TD MP + Sbjct: 639 QGHVLVADDDPINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPDQYDLLITDCHMPHL 698 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSN-APKNA------KVLSKPFHLRDLVN 112 DG L R+ + ++ G DS A + A KV+ KP+ L +L Sbjct: 699 DGFALTRKVKQ-----EISLFKGVVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRK 753 Query: 113 EVNRLLTIK 121 ++R LT + Sbjct: 754 VLSRYLTTQ 762 >gi|255035713|ref|YP_003086334.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948469|gb|ACT93169.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1278 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+D +R F I+ L + Y ++ NG + +E+ ++L+D++MPE+ G+E+ Sbjct: 1029 ILIIEDNDQLRVF-IRELFEETYNILEAGNGLRGVELAQEKIPDIILSDVMMPEISGLEV 1087 Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R + D + V+ +T + L KPF R L ++N LL ++ Sbjct: 1088 CNRLKKSDTTSHIPVVLLTARTQSEQVIEGLTAGADDYLVKPFDPRILEIKINNLLRVR 1146 >gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1493 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILLAED+ ++ IK L + GY NG D + + + ++L D+ MPEMDG Sbjct: 1178 NLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNRQQYDVILMDVQMPEMDG 1237 Query: 62 IELAR 66 +E ++ Sbjct: 1238 LEASK 1242 >gi|153809669|ref|ZP_01962337.1| hypothetical protein RUMOBE_00050 [Ruminococcus obeum ATCC 29174] gi|149833847|gb|EDM88927.1| hypothetical protein RUMOBE_00050 [Ruminococcus obeum ATCC 29174] Length = 539 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +ILL +D+ +R + + + G + V C NG A + V+E P ++LTDI+MP MD Sbjct: 3 RILLVDDEILVRDAIKENIDWKGMDCELVGDCENGKEAAEFVKEHPVDIVLTDILMPYMD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+EL+ + P++ ++ +GF + ++ L KP +L + ++ Sbjct: 63 GMELSNFLHDNYPEIVIVIFSGFGEFEYAKKAIQYGVSEYLLKPVTAMELTGVIEKM 119 >gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. CCY0110] gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. CCY0110] Length = 1324 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 13/128 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--------FSLLLTDIV 55 KILL ED+ DMR +L K L YEV + N+G A +R + L+LTDI+ Sbjct: 945 KILLVEDNADMRNYL-KRLLDPYYEVETANDGLEALTLIRNVSDHNNHGAMYDLILTDIM 1003 Query: 56 MPEMDGIEL---ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 MP +DG EL R +E+ + ++ ++ A + L KPF R L+ Sbjct: 1004 MPRLDGFELLQSLRDNSEMQ-KIPIIMLSARAGEEFQIEGLEAGADDYLWKPFSARQLLA 1062 Query: 113 EVNRLLTI 120 V L + Sbjct: 1063 RVKTHLKL 1070 >gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Fulvimarina pelagi HTCC2506] gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Fulvimarina pelagi HTCC2506] Length = 454 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D + L L ++VV +NG A R EP L+L+D++MPE+D Sbjct: 1 MSGRILIVDDSAINLKLLEARLTAEYFDVVQASNGEEALAICRSEPLDLVLSDVMMPEVD 60 Query: 61 GIELARRATELDP---DLKVMFITGF 83 G EL RA + DP L V+ IT Sbjct: 61 GFELC-RALKSDPRTTHLPVVLITAL 85 >gi|159899611|ref|YP_001545858.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] gi|159892650|gb|ABX05730.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] Length = 128 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 N I+L ED+ D+ L + + GY++V+ N+ A + E LL+TD MP M Sbjct: 7 NPAIILVEDEPDILIILHRIMRDLTGGYDIVTVNSAQDALGVLTERSCPLLITDHNMPGM 66 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L + + D KV+ IT +A + + L+KPF L L + +L Sbjct: 67 TGTQLTQVVKQDYVDTKVIIITAYATPEVERTARTAGVDYFLTKPFSLDRLEQIIKEVL 125 >gi|113867387|ref|YP_725876.1| response regulator [Ralstonia eutropha H16] gi|113526163|emb|CAJ92508.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 210 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 6/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA---SAYDKVREEPFSLLLTDIVMPE 58 + + + +DD+ MR L L GY+V S + +AYD + S L+ D+ MP Sbjct: 12 GETVFIVDDDEAMRDSLTWLLEGNGYQVRSFTSAEQFLAAYDASQ---VSCLILDVRMPG 68 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G EL R D+ ++FITG V + + + KPF +L V R+L Sbjct: 69 MSGPELQERMLAEQIDIPIVFITGHGDVPMAVSTMKRGAIDFIEKPFDESELRALVERML 128 Query: 119 T 119 T Sbjct: 129 T 129 >gi|104781530|ref|YP_608028.1| sigma-54 dependent trancsriptional regulator [Pseudomonas entomophila L48] gi|95110517|emb|CAK15225.1| putative sigma-54 dependent transcriptional regulator, Fis family/response regulator [Pseudomonas entomophila L48] Length = 475 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ EDDD + + L G+EV C++ A ++++ +LTD +P M Sbjct: 1 MDHSILVVEDDDILADNIRTYLSLKGFEVTVCSSAELALEQIQRARPDAVLTDNSLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G +L R P+LKV+ +TG+ V + L+KP L +L Sbjct: 61 GHDLLRTLVAQAPELKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAEL 110 >gi|78100993|pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From Pseudomonas Fluorescens gi|78101079|pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr gi|59580654|gb|AAC06272.2| response regulatory protein [Pseudomonas fluorescens] Length = 208 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 57/116 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L L AG+EV + + ++ + R E L+ D+ MP M GIEL Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIEL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + T + + ++FIT + + + + L KPF + L++ + + L + Sbjct: 67 QEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 >gi|323936532|gb|EGB32820.1| response regulator receiver domain-containing protein [Escherichia coli E1520] Length = 1180 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 944 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1003 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1004 TRKLREQNSSLPIWGLTANA 1023 >gi|297585449|ref|YP_003701229.1| response regulator receiver protein [Bacillus selenitireducens MLS10] gi|297143906|gb|ADI00664.1| response regulator receiver protein [Bacillus selenitireducens MLS10] Length = 119 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D +R L + + G++ + +NG A E L+L D+ +P MD Sbjct: 1 MAKKILIVDDQFGIRTLLTEVFQEDGFDTCNASNGKDAIQLTYSEKPDLILLDMKIPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV 114 G+++ R E D + V+ +T + ++ A ++KPF ++R+ V E+ Sbjct: 61 GLDILRYLREEDNGVDVIIMTAYGEADRMKEAKALGALAYIAKPFDIDYVRERVREL 117 >gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 200 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ D+ + + L K GY V S +G A D + + L++ DI+MP++DG E Sbjct: 2 KILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEYDLVILDIMMPKVDGFE 61 Query: 64 LARRATELDPDLKVMFITG 82 + ++ + V+ +T Sbjct: 62 VIKKLRDKGNHTSVLMLTA 80 >gi|121713400|ref|XP_001274311.1| two component histidine kinase 1, putative [Aspergillus clavatus NRRL 1] gi|119402464|gb|EAW12885.1| two component histidine kinase 1, putative [Aspergillus clavatus NRRL 1] Length = 675 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ ILL ED+ +R + + L G++VV NNG A + V F +L D MP MDG Sbjct: 551 NRHILLVEDNVINQRIVSRKLQSLGFQVVEANNGREALEAVYARRFDCILMDQSMPVMDG 610 Query: 62 IELARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R E + + + V+ +T + V+ KP+ + +L ++ Sbjct: 611 NAATRAIREFEKEKTVDHIPVLGVTANVRAEQQQEMLQSGMDDVIHKPYKMEELTKKIQE 670 Query: 117 LL 118 LL Sbjct: 671 LL 672 >gi|120436048|ref|YP_861734.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117578198|emb|CAL66667.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 1406 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ D+R+F+ ++L + Y + NG ++K +E +++++D++MPEMDGIE Sbjct: 1157 ILVVDDNKDIRKFIRQSL-QDNYNIQEAENGREGFEKAKEIVPNIIISDLIMPEMDGIEF 1215 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNRLLTIKN 122 + F+ A + + A ++ L KPF+L L ++ ++T +N Sbjct: 1216 CHHCKNDPATSHIPFLLLTAKDSQESELVAMESGADDYLIKPFNLELLQLKLKNIITKRN 1275 >gi|94988905|ref|YP_597006.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94542413|gb|ABF32462.1| two-component response regulator [Streptococcus pyogenes MGAS9429] Length = 246 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ ED+ +R+ + + + +++ N NG A+D ++EP+ ++LTDI MP+++G Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 62 IELARRATELDPDLKVMFITGF-------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 I+LA + P ++F+TG+ +A+ L D L KPF D+ + + Sbjct: 64 IQLAELIKQESPQSHLVFLTGYDDFNYALSALKLGADD-------YLLKPFSKADVEDML 116 Query: 115 NRL 117 +L Sbjct: 117 GKL 119 >gi|22299981|ref|NP_683228.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296166|dbj|BAC09990.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 163 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +D +R +++ + + GY+VV +G A +K++ + L++ D+VMP M+G EL Sbjct: 47 IMVVDDSPTLRAMIVELMKEQGYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYEL 106 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R + + + V+ T + D + K V ++KPF +LV V +LL Sbjct: 107 CRWIKGEAVSQKVPVIMCTTKSE---EFDIHWGKKQGVDAYITKPFDPAELVASVKQLL 162 >gi|27377396|ref|NP_768925.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27350540|dbj|BAC47550.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 127 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++ R L + L + GYEV+ +GA + L+L D+ +P +DG E Sbjct: 3 KILLVEDNEMNRDMLSRRLVRGGYEVIIAEDGARGVAIATSDRPDLILMDMSLPVIDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A R + P+L+ + I A A+ D + A +KP L+ L+ ++ LL Sbjct: 63 -ATRQIKATPELRKIPIIALTAHAMATDRDKALKAGCDDYDTKPIELQRLLGKIETLL 119 >gi|150019834|ref|YP_001312088.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149906299|gb|ABR37132.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 230 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 41/66 (62%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD D+ + + K+L G+ +S +G A ++E ++ DI+MP+MD Sbjct: 1 MQKKILVIDDDKDIVKLITKSLSYEGFGTISAYSGKEALCVLKENNIDFIILDIMMPDMD 60 Query: 61 GIELAR 66 G+++ R Sbjct: 61 GLDVCR 66 >gi|95931295|ref|ZP_01314012.1| response regulator receiver protein [Desulfuromonas acetoxidans DSM 684] gi|95132655|gb|EAT14337.1| response regulator receiver protein [Desulfuromonas acetoxidans DSM 684] Length = 122 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 38/63 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D FL+ AL G+ +V+ +G A +K EPF L++ D++MP +G + Sbjct: 3 KILVADDSKTEMAFLLDALKGTGHSIVTAVDGKEAEEKAMAEPFDLIILDVIMPNKNGFQ 62 Query: 64 LAR 66 + R Sbjct: 63 VCR 65 >gi|94985173|ref|YP_604537.1| response regulator receiver protein [Deinococcus geothermalis DSM 11300] gi|94555454|gb|ABF45368.1| response regulator receiver protein [Deinococcus geothermalis DSM 11300] Length = 128 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 14/126 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+D+ +R L L G+E+V+ +G +A D +R+ LL D+ MP+MD Sbjct: 4 MAYTILVADDEPAIRTMLEVILSADGHEIVTVPDGKAALDYLRDHTPDALLLDVQMPQMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNP--DSNAPKNAKVLS------KPFHLRDLVN 112 G E+ R +V ++G A + L D A+++ KP ++L Sbjct: 64 GFEICSRVK------RVKRLSGTAVLLLTGRDDDQTRDQARLVGADDLIYKPLSGKNLRG 117 Query: 113 EVNRLL 118 +N+L+ Sbjct: 118 RINQLI 123 >gi|330826607|ref|YP_004389910.1| response regulator receiver protein [Alicycliphilus denitrificans K601] gi|329311979|gb|AEB86394.1| response regulator receiver protein [Alicycliphilus denitrificans K601] Length = 241 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD R F+ +AL E++ C + A A + +L+LTD+ +P+ G++ Sbjct: 7 RVLLLEDDGLARHFVREALDGMALELLPCASLAEARRLLSAHAVALVLTDLHLPDGSGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L R E D + + +G L A +VL KP + DL++ V + L Sbjct: 67 LLRWLQERGGDCRTVVFSGGVDDGLRQRLLAQGVWRVLRKPVSVGDLIDCVEQALA 122 >gi|320180364|gb|EFW55295.1| Hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella boydii ATCC 9905] Length = 1127 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|326772524|ref|ZP_08231808.1| phosphate regulon transcriptional regulatory protein PhoB [Actinomyces viscosus C505] gi|326637156|gb|EGE38058.1| phosphate regulon transcriptional regulatory protein PhoB [Actinomyces viscosus C505] Length = 242 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +LL +D+ +RR L L + GY V+ ++GA A D + ++++D++MP MDG Sbjct: 10 SATVLLVDDEAPIRRSLGPYLERGGYRVLLASDGAEAMDILASYQVDIIVSDVLMPRMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR ++ +T A + LSKPF +L + + +L Sbjct: 70 RELVRRVRAGGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVL 126 >gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1494 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILLAED+ ++ IK L + GY NG D + + + ++L D+ MPEMDG Sbjct: 1178 NLRILLAEDNVTNQKVAIKLLERLGYRADIAGNGLEVLDALNRQQYDVILMDVQMPEMDG 1237 Query: 62 IELAR 66 +E ++ Sbjct: 1238 LETSK 1242 >gi|258592607|emb|CBE68916.1| putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 460 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D+ DM + L + GYE ++ +G +A RE P L+LTD+ MP +DG+ Sbjct: 6 RVLVIDDEVDMLENCARLLTRFGYEAMTEAESGKAATLYERERP-DLVLTDLRMPGLDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + + +DP+ V+ IT FA + ++ L KPF Sbjct: 65 GVLQAIRAIDPEATVILITAFATIETAVEAIKEGAFDYLPKPF 107 >gi|285017463|ref|YP_003375174.1| two-component system response regulator protein pilr [Xanthomonas albilineans GPE PC73] gi|283472681|emb|CBA15186.1| probable two-component system response regulator protein pilr [Xanthomonas albilineans] Length = 462 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + L+ +D+ D+R L+ LG+ G + + N A A + + + L +TD+ +P+ +G Sbjct: 4 TRSALIVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNRYDLCITDMRLPDGNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IEL + P V IT F ++ L ++ +SKP ++ L V L + Sbjct: 64 IELVSEIAKHYPHTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIQILRGLVKHALELN 123 Query: 122 N 122 N Sbjct: 124 N 124 >gi|255535149|ref|YP_003095520.1| response regulator receiver domain protein [Flavobacteriaceae bacterium 3519-10] gi|255341345|gb|ACU07458.1| response regulator receiver domain protein [Flavobacteriaceae bacterium 3519-10] Length = 120 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 8/121 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+A+D+ + L A KAGYEV +GA + ++ E ++L DI+MP +DG Sbjct: 2 KKILIADDEHKIIMTLEYAFRKAGYEVYIARDGAEVLEIIKTEIPDIILLDIMMPNVDGY 61 Query: 63 ELAR--RATELDPDLKVMFI---TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R + ++KV+F+ TG A + + A +A V +KP+ ++ L +V +L Sbjct: 62 TTLSEIRKDKSYENIKVVFLSAKTGEADIKKGLERGA--DAYV-TKPYSIKKLTEKVEKL 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|172035362|ref|YP_001801863.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171696816|gb|ACB49797.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 121 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 38/63 (60%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED +R + L K G++V+ +G A + ++E L++ DIVMP+M+G E+ Sbjct: 4 VLLVEDSPAQQRMIATILKKNGWQVIIAEDGIQALETIKEASPDLIVLDIVMPKMNGYEV 63 Query: 65 ARR 67 RR Sbjct: 64 CRR 66 >gi|167758665|ref|ZP_02430792.1| hypothetical protein CLOSCI_01006 [Clostridium scindens ATCC 35704] gi|167663861|gb|EDS07991.1| hypothetical protein CLOSCI_01006 [Clostridium scindens ATCC 35704] Length = 563 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL +D+ ++R +I+ L + GY+V + NG A +K + +++TDI MP MD Sbjct: 24 KILLVDDELEIRDGMIQKLDWHQLGYDVAAAAENGVEALEKADQVQPDVIMTDIRMPFMD 83 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+E + E P +K++ +GF Sbjct: 84 GLEFIEKVIERLPAVKIIVFSGF 106 >gi|164686841|ref|ZP_02210869.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM 16795] gi|164604231|gb|EDQ97696.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM 16795] Length = 227 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ KIL+ ED+ D+R + + L + GY+V+ +G D + F L+L DI++P+++ Sbjct: 7 VSTKILIVEDEIDIREGISEYLSEVGYDVMVAEDGQEGIDLFKSNEFDLVLLDIMLPKIN 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 G + + E+ D+ VM +T S K ++KPF + Sbjct: 67 GFGVLSQIREI-SDVPVMMLTAMTDDYSQIMSFNEKADDYITKPFSV 112 >gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] Length = 1084 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPE 58 + ILL ED++ R + L + G+ V S NGA A +KV + L+L D+ MP Sbjct: 961 GKHILLVEDNELNREIAQEILREYGFLVDSAENGAVAVEKVSTAAPGSYDLVLMDVQMPI 1020 Query: 59 MDGIELARRATEL-DPDLKVMFITGFAAVALNPD-SNAPKNA--KVLSKPFHLRDLVNEV 114 MDG R+ L DP + I A A + D NA ++ LSKP + DLV E+ Sbjct: 1021 MDGYTATRKIRALDDPARAKIPILAMTANAFDEDRRNALESGMNGFLSKPIVIDDLVQEL 1080 Query: 115 NRLL 118 +++L Sbjct: 1081 HKIL 1084 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 K L+ +DD + + K L K G +G A + R+ + + + D +P+ Sbjct: 821 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDVYHAYIIDWRLPD 880 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 M+GIE+ R+ L D ++ +T + + ++ A SKP + DL Sbjct: 881 MNGIEVTRQIRSLHDDTPIIILTAYDWSDIEVEAKAAGVTAFCSKPMFMSDL 932 >gi|157738519|ref|YP_001491203.1| two-component response regulator [Arcobacter butzleri RM4018] gi|157700373|gb|ABV68533.1| two-component response regulator [Arcobacter butzleri RM4018] Length = 221 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59 MN+++LL EDD DM++ +++ L + ++ V+ + + + + +S+++ D+++PEM Sbjct: 1 MNKRVLLIEDDKDMQKLIVEYLKEYDFDCVAFDQPKDVLEHFKIDNNYSIIILDLMLPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG +L ++ ++ D+ ++ + + L+KP+ R+LV + +L Sbjct: 61 DGFDLFKKLKQI-KDIPIVISSARGDIGNKIHGFELGADDYLAKPYEPRELVLRIEHIL 118 >gi|148654342|ref|YP_001274547.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148566452|gb|ABQ88597.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 132 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ D+ + + L G+E+++ NG A + E L++ DI +P +DG E Sbjct: 14 RILIVDDNRDILDLVQRVLLAEGHEIITARNGVEALQREAEYTPDLIVLDINLPFLDGWE 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ ++ AV L A + VL KPF L DLVN + RL Sbjct: 74 VCRQIKARRSVPVIILSVRAEAVDLERSRAAGADDHVL-KPFDLDDLVNRIARL 126 >gi|91780060|ref|YP_555268.1| periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91692720|gb|ABE35918.1| Periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 759 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 15/116 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREE--------PFSLLLT 52 +ILL ED+ ++ L G++V N +A +D+ R PF L+L+ Sbjct: 620 RILLVEDNSEVAAGTEALLQMMGHQVTCVFNADTALRLFDEARARQARTGEPPPFDLVLS 679 Query: 53 DIVMP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 DI MP M+GI+LA D L V+ +TG+A + N +VLSKPF + Sbjct: 680 DIHMPGTMNGIDLAEAVLAFDSTLPVILVTGYAE---ELERARHVNVRVLSKPFDI 732 >gi|88603193|ref|YP_503371.1| response regulator receiver domain-containing protein [Methanospirillum hungatei JF-1] gi|88188655|gb|ABD41652.1| response regulator receiver domain protein (CheY-like) [Methanospirillum hungatei JF-1] Length = 156 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 12/109 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + + + L ++G +V++ +G A + +E P ++L DI+MP MDG E+ Sbjct: 25 VLIVDDNKNNLYIIAEVLHRSGSQVMTSTDGPHALEMAQERPPDIILLDIMMPGMDGFEV 84 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFH 106 RR +D + V+F++ A + D+N + ++KPFH Sbjct: 85 CRRLWMMDAIKSVPVIFLS-----AKDEDTNIETGLEAGGTDYITKPFH 128 >gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 224 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 46/81 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++L+ E+++ + RF+ L GY+V +G + + +E P L++ + +P M Sbjct: 1 MSHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS 60 Query: 61 GIELARRATELDPDLKVMFIT 81 G+EL RR E+ + ++ IT Sbjct: 61 GLELCRRLREMGSRIPIILIT 81 >gi|238794559|ref|ZP_04638167.1| Nitrogen regulation protein NR(I) [Yersinia intermedia ATCC 29909] gi|238726139|gb|EEQ17685.1| Nitrogen regulation protein NR(I) [Yersinia intermedia ATCC 29909] Length = 470 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + + G D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCATFDTGNQVLDALATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V+R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVDRAIS 120 >gi|332088166|gb|EGI93288.1| sensor protein evgS [Shigella boydii 5216-82] Length = 1127 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|313106925|ref|ZP_07793128.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310879630|gb|EFQ38224.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 321 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS-AYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D + +AL +AGY+ + + AS A ++ + P S+LL D +MPEMDG+ Sbjct: 7 SILVVDDAKFSSAMIGRALSQAGYQDIRFASSASEALQQLEQRPVSVLLADWLMPEMDGL 66 Query: 63 ELARRATELDPDLK----VMFITG 82 EL R +LD + ++ +TG Sbjct: 67 ELTARVRQLDESINHYTYIVLLTG 90 >gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 229 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ + + L GY V +NG A + + EP+ L+L D+ +P +DG+E Sbjct: 2 KILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLPGIDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + KV+ ++ +AV+ + D+ A L KPF +L V LL Sbjct: 62 LLRTLRAQHSETKVLILSARSAVSDRIVGLDAGAD---DYLVKPFAFGELEARVRNLL 116 >gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 228 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 11/121 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + ++L ED+ ++ + + L AG+EV ++G AY+ + SL++ D+++P MDG+ Sbjct: 2 KHVMLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSFTQRKPSLMILDLMVPRMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ E DL ++ +T + LN ++ L KPF ++LV V + Sbjct: 62 TICRKVRE-QSDLPIIMVTARTEEIDRVLGLNMGAD-----DYLCKPFSPKELVARVQAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|260779044|ref|ZP_05887936.1| autoinducer 1 sensor kinase/phosphatase luxN [Vibrio coralliilyticus ATCC BAA-450] gi|260605208|gb|EEX31503.1| autoinducer 1 sensor kinase/phosphatase luxN [Vibrio coralliilyticus ATCC BAA-450] Length = 841 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 2 NQKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++L DD +++R L+K L + GY+VV NNG A + + P L+ DI MP M+ Sbjct: 720 DNHLILVVDDKEIQRSLVKLYLEQLGYDVVLANNGKVAIEIIHSNPIDLVFMDIQMPVMN 779 Query: 61 GIELARRATELDPDLKVMFITG 82 G E A P + ++ ++G Sbjct: 780 GFEAASIIKRSYPTIPIIALSG 801 >gi|326201290|ref|ZP_08191162.1| response regulator receiver protein [Clostridium papyrosolvens DSM 2782] gi|325988858|gb|EGD49682.1| response regulator receiver protein [Clostridium papyrosolvens DSM 2782] Length = 121 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +K+L+ +D MR L L + +EVV +NG +A +K RE L+ DI MPEM Sbjct: 1 MRKKVLVVDDTVFMRTSLRLLLERNDFEVVGEADNGLAAINKYREFMPDLVTMDITMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG++ + +++ + KV+ ++ A +S + KP+ +++N + +++ Sbjct: 61 DGLQALKAIRQINANAKVVMVSAMGQEAQVRESILNGAISFIVKPYKDENVINTLRKIVE 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 868 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-- 61 +IL AED+ ++ L + + NNG A D++REE F L+L DI MP MDG Sbjct: 621 RILAAEDNTLNQKLLKAIFERLNIPLTIVNNGQEALDRLREETFDLVLMDIQMPVMDGYT 680 Query: 62 -IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 I+ RR + + ++ +T A V + + +SKPF +L+ + L Sbjct: 681 AIKEIRRT--VSSTIPIITMTAHAMVGEKEECLSIGANSYISKPFKESELLYTIAHL 735 >gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Sulfurihydrogenibium azorense Az-Fu1] gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Sulfurihydrogenibium azorense Az-Fu1] Length = 228 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 16/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE- 63 I + EDD+D+ L K G+EV S NG A++ ++E+ ++ D++MPE+DG+E Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHIKEDKPDAVVLDLMMPEIDGLEF 63 Query: 64 --LARRATELDPDLKVMF------ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L R E+ +M I + L D ++KPF R+L+ V Sbjct: 64 CKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADD-------YVTKPFSFRELLARVK 116 Query: 116 RLL 118 ++ Sbjct: 117 AVI 119 >gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] Length = 226 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 53/118 (44%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++++L+ EDD D R F+ K G+ GY V +G + F ++ D ++P +D Sbjct: 1 MSRRLLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + V+ +T +AV L KPF ++L + LL Sbjct: 61 GLSLIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALL 118 >gi|107100019|ref|ZP_01363937.1| hypothetical protein PaerPA_01001040 [Pseudomonas aeruginosa PACS2] Length = 366 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS-AYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D + +AL +AGY+ + + AS A ++ + P S+LL D +MPEMDG+ Sbjct: 52 SILVVDDAKFSSAMIGRALSQAGYQDIRFASSASEALQQLEQRPVSVLLADWLMPEMDGL 111 Query: 63 ELARRATELDPDLK----VMFITG 82 EL R +LD + ++ +TG Sbjct: 112 ELTARVRQLDESINHYTYIVLLTG 135 >gi|94263605|ref|ZP_01287415.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94267478|ref|ZP_01290887.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94272113|ref|ZP_01292070.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450233|gb|EAT01516.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451987|gb|EAT02694.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456025|gb|EAT06176.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 126 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 7/123 (5%) Query: 4 KILLAEDDDDMRRFL---IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +IL+ +D+ +R L ++ L G E+ +NGA A + +R E L+ D++MP+M+ Sbjct: 3 QILIVDDEAHIRLLLEQTMEELEDDGVELTMADNGAEALEIIRAERPDLVFLDVMMPKMN 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 G E+ R E DP L ++I A + N +A L+KPF+ D++ ++ Sbjct: 63 GFEVCRAVKE-DPALDGVYIALLTAKGQESEKNRGLDAGADSYLTKPFNPDDILAMARKI 121 Query: 118 LTI 120 L + Sbjct: 122 LGL 124 >gi|154246784|ref|YP_001417742.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160869|gb|ABS68085.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 232 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY + + +GASA D + P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KTDMPVIFLTSKDEEIDELFGLKMGADD-------FIKKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 974 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++LLAED+ + + L + G + NG A DK+ EPF L+L D+ MPEMD Sbjct: 715 MGLRVLLAEDNLVNQHYASILLKRQGCLTTTAANGREALDKLAAEPFDLVLMDVQMPEMD 774 Query: 61 GIELAR 66 G++ R Sbjct: 775 GVKATR 780 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED L + L +G V + A E P +++++DI+MP MDG EL Sbjct: 7 ILIVEDSPTQALRLEQLLLGSGLSVRVAASAVEALALADENPPAVVVSDILMPGMDGYEL 66 Query: 65 ARR 67 RR Sbjct: 67 CRR 69 >gi|327404576|ref|YP_004345414.1| response regulator receiver protein [Fluviicola taffensis DSM 16823] gi|327320084|gb|AEA44576.1| response regulator receiver protein [Fluviicola taffensis DSM 16823] Length = 515 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 54/111 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL A+D+ + + + L GY V NNG+ A +K +E + ++ D MP + Sbjct: 1 MQAKILWADDEMEFLKPHVLFLEAKGYSVELINNGSEAVEKCQENNYDIVFLDENMPGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 G+E R E+ P V+ IT ++ ++ K A L KP + L+ Sbjct: 61 GLEALARIKEITPQTPVVMITKSEEESIMEEAIGSKIADYLIKPVNPNQLL 111 >gi|327188807|gb|EGE56001.1| response regulator receiver protein [Rhizobium etli CNPAF512] Length = 122 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R L AGY V +GA + F L++TD+ MP MD Sbjct: 1 MSANILTVDDSASIRLTTKVTLSNAGYNVTEAADGAEGLATAKSGRFDLIVTDLNMPVMD 60 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + +L + ++F+T + L + A L+KPF +LV V ++L Sbjct: 61 GLTMIEELRKLPGQAGVPIIFLTTESDADLKARAKAAGATGWLTKPFDPENLVKIVKKVL 120 >gi|323949581|gb|EGB45469.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323955874|gb|EGB51629.1| response regulator receiver domain-containing protein [Escherichia coli H263] Length = 1127 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 226 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM--DG 61 +IL+ EDD + + +ALG+AGY ++G +A + E + L++ D+++P + G Sbjct: 2 RILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETYDLVVLDLMLPGIAGGG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ R D+ ++ +T ++ + L KPFHL +L+ V L+ Sbjct: 62 MEVCRVMRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALM 118 >gi|312967659|ref|ZP_07781874.1| sensor protein evgS [Escherichia coli 2362-75] gi|312287856|gb|EFR15761.1| sensor protein evgS [Escherichia coli 2362-75] Length = 1128 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 892 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 951 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 952 TRKLREQNSSLPIWGLTANA 971 >gi|309791680|ref|ZP_07686172.1| response regulator receiver protein [Oscillochloris trichoides DG6] gi|308226302|gb|EFO80038.1| response regulator receiver protein [Oscillochloris trichoides DG6] Length = 138 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 +ILL EDD + R + AL + G YE S + E PF +LLTD + M Sbjct: 10 TTRILLVEDDSHIGRIIEMALLELGVPYEFASALSAEEGLHLWEEHPFDVLLTDYNLRGM 69 Query: 60 DGIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +G++L A R P +V+ IT + + L + + ++KPF + DLV V +L Sbjct: 70 NGVQLIEALRVRGFTP--RVLLITAYDSSDLRHELDHLHIDAYVTKPFFMDDLVMIVRKL 127 Query: 118 L 118 + Sbjct: 128 M 128 >gi|296391104|ref|ZP_06880579.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 366 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS-AYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D + +AL +AGY+ + + AS A ++ + P S+LL D +MPEMDG+ Sbjct: 52 SILVVDDAKFSSAMIGRALSQAGYQDIRFASSASEALQQLEQRPVSVLLADWLMPEMDGL 111 Query: 63 ELARRATELDPDLK----VMFITG 82 EL R +LD + ++ +TG Sbjct: 112 ELTARVRQLDESINHYTYIVLLTG 135 >gi|323529788|ref|YP_004231940.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323386790|gb|ADX58880.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 509 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-M 59 ++ +LL +D+ D+ + L GYEVV ++ + A + ++E ++ TDI M + Sbjct: 393 HETVLLVDDEPDVLGVASELLMSIGYEVVPASSASEAAEILKERTDIGVVFTDITMAHGI 452 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G+ELAR P ++V+ +G++A L + + + + KP+ L DL Sbjct: 453 SGLELARLIRSQYPAIRVVLTSGYSAAPLRDEKSGLGDLIFVQKPYRLADL 503 >gi|251795327|ref|YP_003010058.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542953|gb|ACS99971.1| two component transcriptional regulator, AraC family [Paenibacillus sp. JDR-2] Length = 530 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 24 KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 +AG +VV + NG A K+ E +++TD+ MP MDG+E RRA ++D +K+++++G Sbjct: 25 QAGIQVVGTARNGKEALAKLTELKPDIIVTDVRMPIMDGLEFGRRAKQIDKSVKIIYLSG 84 >gi|254788203|ref|YP_003075632.1| alkaline phosphatase synthesis PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686062|gb|ACR13326.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 120 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +L+ +D +R+ + L AG++VV NG A + L+++D+ MP MD Sbjct: 1 MSKNVLVVDDSSSVRQVVGLVLKNAGFDVVEACNGEEALKLLDGRKLHLIVSDLNMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 GI A+ A E+D D K I + K A + L KPF L++ V++L Sbjct: 61 GITFAKHAKEMD-DYKFTPILMLTTESDQEKKKQGKEAGIKAWLVKPFQPPLLLSAVSKL 119 >gi|170726642|ref|YP_001760668.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169811989|gb|ACA86573.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 226 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 13/113 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +DD R L +AL + GY V+ +G +A + E ++L DI+MP++DG Sbjct: 3 KVLLVDDDLVFRELLEQALAEEGYRVICAEDGVAALSILEIESPDIILLDIMMPKLDGFG 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLV 111 L E P V+ I+ A++ +S+ K ++ LSKPF +++L+ Sbjct: 63 LLAARKEQIP---VIIIS-----AIDCESDRIKGYELGADDFLSKPFSVKELL 107 >gi|83310968|ref|YP_421232.1| CheY-like receiver [Magnetospirillum magneticum AMB-1] gi|82945809|dbj|BAE50673.1| CheY-like receiver [Magnetospirillum magneticum AMB-1] Length = 132 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I +A+DD D+R + L + G+ V NG + L++TD+ MP DG+ Sbjct: 7 RIAVADDDSDLREVVATMLERDGHWVEVAANGRECLTLIDSGTIDLVVTDVFMPGGDGMS 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118 L P L V+ +TG +P +A K+A +L+KPF + L ++L Sbjct: 67 LMAAIRSRQPRLPVIAMTGGMGGLSHPSVDAMKSAGAQAILAKPFTRQALREATAQVL 124 >gi|33603516|ref|NP_891076.1| response regulatory protein [Bordetella bronchiseptica RB50] gi|33577640|emb|CAE34905.1| response regulatory protein [Bordetella bronchiseptica RB50] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +L K L ++GY V NG ++RE+ + +L+ D+++P DG ++ Sbjct: 3 ILVIEDDLKTGDYLKKGLLESGYSVDLARNGIDGLHRLREQRYDVLVLDVMLPGKDGWQV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + D D+ V+F+T VA L KPF +LV + +L Sbjct: 63 IEEVRQ-DSDVPVIFLTARDHVADRIRGLRLGADDYLVKPFSFAELVLRIQTML 115 >gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1230 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N K L+ +D+ + A+ ++V + +NGA A K+ P LLL D +MPEMDG Sbjct: 966 NLKTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPEMDG 1025 Query: 62 IELARRATELDPDLK------VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +E+ + + D + ++ +T +A+ L D + +L KPF L +E+ Sbjct: 1026 VEVIKALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKPFKASALFDEI 1084 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 +ILL ED+ ++ + L AGYEV NG A D V + + +L DI MP MDG+ Sbjct: 1111 QILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLT 1170 Query: 63 ---ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL +R T+ +L V+ +T A S A ++KP L +L + + + + Sbjct: 1171 ATKELRKRYTK--EELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQWI 1227 >gi|126172493|ref|YP_001048642.1| two component transcriptional regulator [Shewanella baltica OS155] gi|160873368|ref|YP_001552684.1| two component transcriptional regulator [Shewanella baltica OS195] gi|304411806|ref|ZP_07393418.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307306140|ref|ZP_07585885.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125995698|gb|ABN59773.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|160858890|gb|ABX47424.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|304349994|gb|EFM14400.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911013|gb|EFN41440.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315265596|gb|ADT92449.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 219 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ LI AL KAGY V +NG EE F ++ D+ +P G++ Sbjct: 2 RLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T A D L KPFH+ +L+ + L+ Sbjct: 62 VLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLI 116 >gi|327439712|dbj|BAK16077.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 236 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 M +KIL+ EDD+++ L L K GYEV +G A ++ EP ++LL D ++P+M Sbjct: 1 MTKKILVVEDDENLVNLLHIYLVKDGYEVQCVRSGKEALAAIQSFEPDAMLL-DWMLPDM 59 Query: 60 DGIELARRATELDPDLKVMFITGFA---AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +GIE+ R+ D D ++ I+ + L + A + + KPF R+++ + Sbjct: 60 EGIEICRQV-RFDHDFPIIMISARTDELDIVLALEMGA---TEYIRKPFGFREMLTRLR 114 >gi|320196219|gb|EFW70843.1| Hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli WV_060327] Length = 1127 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|315635389|ref|ZP_07890655.1| DNA-binding response regulator [Arcobacter butzleri JV22] gi|315480147|gb|EFU70814.1| DNA-binding response regulator [Arcobacter butzleri JV22] Length = 221 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59 MN+++LL EDD DM++ +++ L + ++ V+ + + + + +S+++ D+++PEM Sbjct: 1 MNKRVLLIEDDKDMQKLIVEYLKEYDFDCVAFDQPKDVLEHFKIDNNYSIIILDLMLPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG +L ++ ++ D+ ++ + + L+KP+ R+LV + +L Sbjct: 61 DGFDLFKKLKQI-KDIPIVISSARGDIGNKIHGFELGADDYLAKPYEPRELVLRIEHIL 118 >gi|257094984|ref|YP_003168625.1| two component LuxR family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047508|gb|ACV36696.1| two component transcriptional regulator, LuxR family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 205 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 54/117 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + + +DD +RRFL++ L G +G + + +L DI MP + G Sbjct: 6 THTVCIVDDDVQVRRFLVEILASIGLVAEEYASGEDFMRRWQPGGTGCVLLDIRMPRITG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ + PD+ V+F++G+A V + L KPF+++ L+ VN L Sbjct: 66 PEIHDWLRQQSPDVPVIFLSGYADVPTAVRAMRLGAFDFLEKPFNVQQLIERVNAAL 122 >gi|302528128|ref|ZP_07280470.1| two-component system response regulatory protein [Streptomyces sp. AA4] gi|302437023|gb|EFL08839.1| two-component system response regulatory protein [Streptomyces sp. AA4] Length = 204 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++L+AED+ +R L++ L + GYEVV +G A + L++ D+ MP++D Sbjct: 17 QRRVLVAEDEALIRLDLVEMLREEGYEVVGEAGDGEEAIALATDLKPDLVILDVKMPKLD 76 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 GIE A R T D V+ +T F+ L + L KPF RDLV Sbjct: 77 GIEAAARITG-DRIAPVVILTAFSQRDLVERARDAGTMAYLVKPFAKRDLV 126 >gi|237799640|ref|ZP_04588101.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022495|gb|EGI02552.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 140 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P Sbjct: 2 VGRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTS 61 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 GIELARR EL D+ ++ +T A + N + +V ++KPF R+LV Sbjct: 62 GIELARRLKRDELTGDIPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVAR 116 Query: 114 VNRLL 118 + +L Sbjct: 117 LKAVL 121 >gi|227495115|ref|ZP_03925431.1| response regulator [Actinomyces coleocanis DSM 15436] gi|226831567|gb|EEH63950.1| response regulator [Actinomyces coleocanis DSM 15436] Length = 202 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSC--NNGASAYDKVREEP-FSLLLTDIVMPEMD 60 K+LL +D + +R L L G VS +NG A + + + P +LLTDI MPEMD Sbjct: 3 KVLLVDDQNLVREALAALLELTGEVEVSAQASNGNQALELLEQHPEIDILLTDIEMPEMD 62 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G+ L A +L P L V +T F Sbjct: 63 GLSLCENAQKLYPQLLVCILTTFG 86 >gi|255284179|ref|ZP_05348734.1| Two-component response regulator YesN [Bryantella formatexigens DSM 14469] gi|255265277|gb|EET58482.1| Two-component response regulator YesN [Bryantella formatexigens DSM 14469] Length = 478 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 5 ILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++LA+D+ + R + K L G+ G E+V +G SA + E+ L L DI MPEM G Sbjct: 1 MILADDEPMIIRGIQKLLDFGQLGIEIVGEYTDGKSAMKGILEQKPDLALLDISMPEMTG 60 Query: 62 IELARRATELDPDLKVMFITGF 83 +E+ + ++ D KV+FI+GF Sbjct: 61 VEILKTCRDMGLDTKVIFISGF 82 >gi|220903605|ref|YP_002478917.1| response regulator receiver protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867904|gb|ACL48239.1| response regulator receiver protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 126 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 N ++L+ +D MRR + L + G++ VV ++G +A++ + E +++D MP M Sbjct: 6 NMRVLVVDDFSTMRRIVRNILRQIGFQNVVEADDGTTAWEVLNREKIDFIVSDWNMPNMT 65 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RA+E + + +T A ++ K + + KPF + +++++ Sbjct: 66 GIELLRKVRASEQFAHIPFLMVTAEAQQENIIEAVQAKVSNYIVKPFTADTMKQKIDKIF 125 >gi|212637655|ref|YP_002314180.1| sigma-54 dependent response regulator [Shewanella piezotolerans WP3] gi|212559139|gb|ACJ31593.1| Sigma-54 dependent response regulator [Shewanella piezotolerans WP3] Length = 453 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V + +++R F LL+ DI +P GIE Sbjct: 10 VLIVDDEPGMRSFLKKALAKK-FALVEIASSVEDAEQLRSRCHFDLLIVDIRLPGRSGIE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 69 WHEALNDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCI 123 >gi|209964766|ref|YP_002297681.1| sensor histidine kinase [Rhodospirillum centenum SW] gi|209958232|gb|ACI98868.1| sensor histidine kinase [Rhodospirillum centenum SW] Length = 591 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED + R L + L + G+ + ++G +A + VR EP L+L DI + MDG E Sbjct: 463 RVLIVEDVEVNRLILEQMLERLGHRTLCTDSGEAALEIVRREPVDLILMDIRLQGMDGAE 522 Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFH---LRDLVN 112 RR L D L + + A D A + A V++KP LRDL++ Sbjct: 523 TTRRLRALPDNRLASLPVVAVTANVFPEDEAAYRQAGMSAVIAKPIQFDRLRDLMD 578 >gi|158425689|ref|YP_001526981.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158332578|dbj|BAF90063.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 233 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY + + +GASA D + P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KTDMPVIFLTSKDEEIDELFGLKMGADD-------FIKKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + F+ + L + GY+V + ++G + +E+P+ LL+ D+++P DG+ Sbjct: 2 RILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVMLPSKDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK---VLSKPFHLRDLVNEVNRL 117 + R EL VM + A D A +A L+KPF +L V L Sbjct: 62 VVR---ELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRAL 115 >gi|222053953|ref|YP_002536315.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221563242|gb|ACM19214.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 452 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 40/82 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL EDD+ R FL L GYEV +G + E F L++TD+ MP G+EL Sbjct: 7 ILLIEDDETFRSFLQTILEDEGYEVRLAGDGREGDRVLARESFDLVITDLKMPGKSGLEL 66 Query: 65 ARRATELDPDLKVMFITGFAAV 86 R + +F+T F V Sbjct: 67 FRETRQDPGSPPFIFLTAFGTV 88 >gi|90022750|ref|YP_528577.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952350|gb|ABD82365.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 120 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ +D MR+ + L AG++V +GA A + F L+L+D+ MP+MDGI Sbjct: 3 KILIVDDSASMRQMVSFTLAGAGHQVTEAPDGADALALAKAGGSFDLVLSDVNMPKMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 L + L P K I + + KNA + KPF L+ VN++L Sbjct: 63 SLVKELRTL-PTFKFTPILMLTTESGSDKKAEGKNAGATGWIVKPFSPDQLIATVNKVL 120 >gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264] gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 DG+ + + + D+ ++F+T Sbjct: 61 DGLSVCKEIRKT-SDVPIIFLT 81 >gi|120597039|ref|YP_961613.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|120557132|gb|ABM23059.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] Length = 219 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ LI AL KAGY V +NG EE F ++ D+ +P G++ Sbjct: 2 RLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T A D L KPFH+ +L+ + L+ Sbjct: 62 VLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLI 116 >gi|329765157|ref|ZP_08256739.1| CheY-like receiver [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138360|gb|EGG42614.1| CheY-like receiver [Candidatus Nitrosoarchaeum limnia SFB1] Length = 156 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-------------PFSLLL 51 +L+AED+ K L GY+V N+GA +K E P+ +L Sbjct: 5 LLIAEDNKFTSTQYKKFLESKGYKVTIFNDGAKCLEKFTNELRYRRVVLKDKSSPYHCVL 64 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDL 110 D MP+M+G E+ + ++ P+ KV+F++ + L + + +++ KPF L L Sbjct: 65 LDHDMPKMNGSEVYEKIRKICPEQKVVFLSAYGQTILKSQEGTREASLQIIQKPFSLDFL 124 Query: 111 VNEV 114 + ++ Sbjct: 125 LKKI 128 >gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1103 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILLAED+ ++ + L GY+ ++G V+ + + ++L DI MP+MDG+E Sbjct: 983 SILLAEDNPINQKVALIMLRHLGYKADVASSGPEVLTSVKRKHYDVILMDIQMPDMDGLE 1042 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 R E+D + I A AL D A + LS+P L +L Sbjct: 1043 ATRHIREMDGSVSQPHIIAMTAYALEGDREEFLKAGMNGYLSEPIQLGEL 1092 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 12/103 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC------------NNGASAYDKVREEPFSL 49 +++L+ E +R L + G G E V+ S +++ F Sbjct: 834 GKRVLIVEGHRSVRDMLFRMAGSWGMEAVALARAEEAIELMTRGTAISGTGQLKSNSFDC 893 Query: 50 LLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDS 92 ++ D V+P+M+G+ LARR +L V+ I+ + DS Sbjct: 894 VILDTVLPDMEGLLLARRIKDLSVASFVVMISHMGEEVVKDDS 936 >gi|307324561|ref|ZP_07603768.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306889805|gb|EFN20784.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 257 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD+ +RR + AL + GY V + +G + R LLL D+++P +DGI L Sbjct: 16 VLLVEDDEVIRRSVGMALERYGYRVSTAGDGLTGLALFRAGGHDLLLLDVMLPGLDGIGL 75 Query: 65 AR--RATELDPDL 75 R R T +DP L Sbjct: 76 CRRIRETSMDPIL 88 >gi|298294321|ref|YP_003696260.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296930832|gb|ADH91641.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 232 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY + + +GA+A D + P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALESEGYRIQTYTDGATALDGFKTNPPDLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDMPVIFLTSKDDEIDELFGLKMGADD-------FIKKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|288961675|ref|YP_003451985.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288913955|dbj|BAI75441.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 720 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 20/124 (16%) Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-DGIELARRATELDP 73 R +A+ GY V+ + +A + +P LL TDIVMP +G ELA P Sbjct: 583 RSVAAQAVAALGYRVLEADGAEAALGLLDRQPVDLLFTDIVMPGGPNGRELALEGLRRHP 642 Query: 74 DLKVMFITGFA--AVALNPDSNAPKN-----------------AKVLSKPFHLRDLVNEV 114 L+++F +G+A A P++ AP + A+ L KP+ DL + Sbjct: 643 SLRILFASGYANGTSAPEPEAGAPTDTGRAIDPGAVLGAVLARAETLPKPYRNGDLARAL 702 Query: 115 NRLL 118 R L Sbjct: 703 RRAL 706 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 6 LLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L DDD F ++ L G +V +G A + + F+L+L D+ MP MDG E Sbjct: 24 ILIVDDDPRNLFAMRETLEDLGARLVLARSGEEALKHLLRQDFALILLDVHMPGMDGYET 83 Query: 65 AR--RATELDPDLKVMFIT 81 A R E + ++F+T Sbjct: 84 AELIRLRERSRHIPIIFLT 102 >gi|226356082|ref|YP_002785822.1| response regulator CheY [Deinococcus deserti VCD115] gi|226318072|gb|ACO46068.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 131 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+ +R L L G+ V +G A ++ R E + +++ D++M DG E Sbjct: 8 HLLVVDDEAQIRELLDLTLSMQGFRVRCSGSGPEAVEQCRTETYDVIVMDVLMSPWDGFE 67 Query: 64 LARR-ATELDPDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R EL + V+F++G PD A+ L KPF LV + +L + Sbjct: 68 SVRALHQELQETMPPVIFLSGLTRAEPLPDLGTYVQAQYLVKPFRPAQLVERIVEVLASR 127 Query: 122 N 122 + Sbjct: 128 D 128 >gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G +A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|171910558|ref|ZP_02926028.1| putative phytochrome sensor protein [Verrucomicrobium spinosum DSM 4136] Length = 472 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED + + + AL AG+ V +G KVRE+ L+L DI+MP+M+GIE Sbjct: 34 RILVVEDANIIALAMSYALEGAGFHVELAADGEECIVKVREDLPDLILLDIMMPKMNGIE 93 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS---KPFHLRDLVNEVNRLL 118 + RA E DL V+ + A + A L KPF+ DLV +V+ L Sbjct: 94 ALKILRADEKTKDLPVIVCS---AKDFKTERQAAAELGALDYLIKPFNPADLVRKVSAAL 150 >gi|170744482|ref|YP_001773137.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168198756|gb|ACA20703.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 736 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEM 59 +Q IL+ ED+ ++ RF + L GY V +A ++ PF + +D+VMP M Sbjct: 590 DQCILVVEDNVEIGRFCTQILHDLGYGTVLTQTAEAALAEIEAVPFRFDAVFSDVVMPGM 649 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI A R E+ P++ V+ +G++ V ++A L KP+ V E+ R T Sbjct: 650 GGIAFAERLREIHPEMPVVLTSGYSHVLA---TDAAHGFAFLRKPYSAEQ-VGEILRAAT 705 Query: 120 IK 121 + Sbjct: 706 AR 707 >gi|170740323|ref|YP_001768978.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194597|gb|ACA16544.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 899 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 +++L+ ED+ ++ RF + L G+ N A D++ E F + +D+VMP M Sbjct: 771 RRVLVVEDNVEVGRFACQILQDLGFTTEWACNAEEALDRLGGEASAFDAVFSDVVMPGMG 830 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI LAR PDL V+ +G++ V ++ ++L KP+ +L ++R+ + Sbjct: 831 GIALARELRRRLPDLPVVLASGYSHVLAQEGAHG---FELLHKPYSGEELGRILDRVTS 886 >gi|152998792|ref|YP_001364473.1| two component transcriptional regulator [Shewanella baltica OS185] gi|151363410|gb|ABS06410.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] Length = 219 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ LI AL KAGY V +NG EE F ++ D+ +P G++ Sbjct: 2 RLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T A D L KPFH+ +L+ + L+ Sbjct: 62 VLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLI 116 >gi|221066892|ref|ZP_03542997.1| two component, sigma54 specific, transcriptional regulator, Fis family [Comamonas testosteroni KF-1] gi|220711915|gb|EED67283.1| two component, sigma54 specific, transcriptional regulator, Fis family [Comamonas testosteroni KF-1] Length = 440 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD D+ + + G + V ++ A ++ + ++++DI +P+M G+ Sbjct: 6 QVLIVEDDADVAMACEQTMRLEGLDCVCASSAEQALKRLSPDFAGVVVSDIRLPQMSGLG 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L LD +L V+ ITG +++ + A L KPF LV V+R L Sbjct: 66 LLAAIRALDAELPVILITGHGDISMAVQAMKDGAADFLEKPFAPERLVETVHRAL 120 >gi|89055032|ref|YP_510483.1| two component, sigma54 specific, Fis family transcriptional regulator [Jannaschia sp. CCS1] gi|88864581|gb|ABD55458.1| two component, sigma54 specific, transcriptional regulator, Fis family [Jannaschia sp. CCS1] Length = 438 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +G++ + ++ A + + +++TD+ MP MDG+ Sbjct: 2 KIAIVDDEQDMRQSISQWLALSGFDTETYSSAEEALKAIGSDFPGVVVTDVKMPGMDGMA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEV--NRLL 118 +R +D + V+ ITG V + ++ L KPF+ + DL R L Sbjct: 62 FLKRLMGVDSGIPVILITGHGDVPMAVEAMRIGAYDFLEKPFNPDRMTDLAKRAGQQRRL 121 Query: 119 TIKN 122 T+ N Sbjct: 122 TLDN 125 >gi|15804453|ref|NP_290493.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 EDL933] gi|25301123|pir||E86074 hypothetical protein glnG [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12518747|gb|AAG59057.1|AE005617_6 response regulator for gln (sensor glnL) (nitrogen regulator I, NRI) [Escherichia coli O157:H7 str. EDL933] Length = 469 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NG + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGXEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|186683181|ref|YP_001866377.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465633|gb|ACC81434.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 629 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA---YDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +R +L Y+ ++ ++G A Y + R++ SL+LTD+VMP MDG Sbjct: 512 ILVVDDEAAIRDVTKTSLESHNYKAMTASDGIEAIALYAEHRDK-ISLVLTDMVMPSMDG 570 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 I R +++PD+K++ ++G + + LSKP+ L+ ++ + I Sbjct: 571 ITTIRTLRKINPDVKIIAVSGMTSTDKVNTAYDMGIKAFLSKPYTASQLLQIISTVQKI 629 >gi|15599592|ref|NP_253086.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|116052431|ref|YP_792742.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218893487|ref|YP_002442356.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254238941|ref|ZP_04932264.1| hypothetical protein PACG_05110 [Pseudomonas aeruginosa C3719] gi|254244793|ref|ZP_04938115.1| hypothetical protein PA2G_05665 [Pseudomonas aeruginosa 2192] gi|9950627|gb|AAG07784.1|AE004855_6 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115587652|gb|ABJ13667.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170872|gb|EAZ56383.1| hypothetical protein PACG_05110 [Pseudomonas aeruginosa C3719] gi|126198171|gb|EAZ62234.1| hypothetical protein PA2G_05665 [Pseudomonas aeruginosa 2192] gi|218773715|emb|CAW29529.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 366 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS-AYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D + +AL +AGY+ + + AS A ++ + P S+LL D +MPEMDG+ Sbjct: 52 SILVVDDAKFSSAMIGRALSQAGYQDIRFASSASEALQQLEQRPVSVLLADWLMPEMDGL 111 Query: 63 ELARRATELDPDLK----VMFITG 82 EL R +LD + ++ +TG Sbjct: 112 ELTARVRQLDESINHYTYIVLLTG 135 >gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 998 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + K L + GY + NG+ + + F ++L D MPEMDG+E Sbjct: 876 RILLAEDDMPSQWVAQKMLKRLGYRADTACNGSEVLLALEQHDFDVVLMDWRMPEMDGLE 935 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R + P LK++ +T +A +SKP DL E+ + Sbjct: 936 ATRIIRQRWPKSQLKIIALTAYALPGDMEKCLEAGMDGYISKPLRKEDLARELEK 990 >gi|323187906|gb|EFZ73201.1| sensor protein evgS [Escherichia coli RN587/1] Length = 1128 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 892 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 951 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 952 TRKLREQNSSLPIWGLTANA 971 >gi|301062888|ref|ZP_07203471.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300443005|gb|EFK07187.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 137 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 60/107 (56%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ + + L AL K G +V A+A ++ E+ F +++TDI M ++DGI+ Sbjct: 6 EVLLLDDEPIVGKRLKPALVKIGCDVEVFEEPAAALKRLEEKVFDVVVTDIRMDDIDGIQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + + + KV+ ITG+A +AL ++ ++KPF DL Sbjct: 66 VLEKVRKSSDRTKVIMITGYAMMALAREAMEKGAFDFIAKPFQPDDL 112 >gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 215 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 2 NQKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +QK L+ DDD L+K L GY+VV+ NG A +K+ E+ L++ D++MPEMD Sbjct: 8 DQKRLMLVDDDPNLILLVKDYLEFRGYDVVTAENGREALEKLEEDLPDLIICDVMMPEMD 67 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPD--SNAPKNAKV-LSKPFHLRDLVNEV 114 G L + E DP + + +A + D A V + KPF +LV +V Sbjct: 68 GYTLVKHVRE-DPRTSWIPVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQV 123 >gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 229 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 7 RLLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGIS 66 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR + P L + ++ D+ A ++KPFHL +++ + LL Sbjct: 67 VLESWRRNKRVMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHLEEVLARIRALL 121 >gi|262382739|ref|ZP_06075876.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262295617|gb|EEY83548.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 916 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDDD++R FL + L +++ + G A + EE SL+++D++MPEM+G EL Sbjct: 669 ILITEDDDEVRGFLEREL-SLHFKIRTAAKGKDALRVLEEEEISLVVSDVMMPEMNGFEL 727 Query: 65 AR 66 R Sbjct: 728 CR 729 >gi|239997165|ref|ZP_04717689.1| putative two-component member protein [Alteromonas macleodii ATCC 27126] Length = 1033 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%) Query: 24 KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA--RRATELDPDLKVMFIT 81 +AG+ V + +G A DK+R + F ++L D+ MP++DG+E A RR E + L I Sbjct: 750 RAGHIVETATDGQIALDKMRAKSFDVVLMDLQMPKLDGLEAAKQRREFEKENSLPPTPII 809 Query: 82 GFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 A L D +A + A + +KP L++E+ R+L I Sbjct: 810 ALTASVLVQDKHAAQQAGMEGFANKPVDFPQLMDEIARVLNI 851 >gi|238761954|ref|ZP_04622927.1| Sensor kinase protein rcsC [Yersinia kristensenii ATCC 33638] gi|238699682|gb|EEP92426.1| Sensor kinase protein rcsC [Yersinia kristensenii ATCC 33638] Length = 932 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 811 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALAVLNANSVDIVLTDVNMPNMDGYR 870 Query: 64 LARRATELDPDLKVMFITGFA 84 L +R +L+ + V+ +T A Sbjct: 871 LTQRLRQLNHNFPVIGVTANA 891 >gi|218128661|ref|ZP_03457465.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697] gi|217989116|gb|EEC55431.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697] Length = 1348 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 43/63 (68%), Gaps = 1/63 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++R++L+ L + + ++ +NG A D ++ + L++TD++MP MDG++ Sbjct: 1100 KILVVDDNQELRQYLVSGL-SSDFNLLEADNGQKALDILKGQEVDLVITDVMMPVMDGVK 1158 Query: 64 LAR 66 L + Sbjct: 1159 LCK 1161 >gi|213617471|ref|ZP_03372297.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 162 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 41 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 100 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 101 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 143 >gi|194432900|ref|ZP_03065184.1| sensor histidine kinase/response regulator EvgS [Shigella dysenteriae 1012] gi|194418888|gb|EDX34973.1| sensor histidine kinase/response regulator EvgS [Shigella dysenteriae 1012] gi|332090130|gb|EGI95229.1| sensor protein evgS [Shigella dysenteriae 155-74] Length = 1128 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 892 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 951 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 952 TRKLREQNSSLPIWGLTANA 971 >gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] Length = 933 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|162450925|ref|YP_001613292.1| two-component system sensor histidine kinase/response regulator, hybrid [Sorangium cellulosum 'So ce 56'] gi|161161507|emb|CAN92812.1| two-component system sensor histidine kinase/response regulator, hybrid [Sorangium cellulosum 'So ce 56'] Length = 1051 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 9/116 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ DMR +L+ L + V + +NG +A P L+++D++MPE+DG+E Sbjct: 488 RILVADDNADMREYLVHLL-TPRWSVEAASNGRAALAAALARPPDLVVSDVMMPELDGVE 546 Query: 64 LAR--RATELDPDLKVMFITGFA---AVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R RA + V+ ++ A AV D+ A L KPF R+L+ V Sbjct: 547 LLRELRADPRTSSVPVVLVSARAGEDAVVEGLDTGAD---DYLVKPFSPRELLARV 599 >gi|218531838|ref|YP_002422654.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524141|gb|ACK84726.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 684 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ ++ F + L + G+ V N A A ++ ++ F ++ TD++MP M+G+ Sbjct: 561 VLVVEDNVEVGTFATQTLAELGFGTVWAANAAEALAELAKDADRFDVVFTDVMMPGMNGV 620 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +LAR L PDL V+ +G++ V +N ++L KP+ + L Sbjct: 621 DLAREIQRLHPDLPVVLTSGYSHVLARTGTNG---FELLQKPYSVEQL 665 >gi|121609961|ref|YP_997768.1| CheA signal transduction histidine kinase [Verminephrobacter eiseniae EF01-2] gi|121554601|gb|ABM58750.1| CheA signal transduction histidine kinases [Verminephrobacter eiseniae EF01-2] Length = 1983 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +RR + L + GY V +G A ++++EE +++L+DI MP MDG +L Sbjct: 1860 VLVVDDSITVRRVTQRLLQREGYRVALAADGLQALERLQEERPTVVLSDIEMPRMDGFDL 1919 Query: 65 AR--RATELDPDLKVMFIT 81 AR RA DL ++ IT Sbjct: 1920 ARNIRADGALRDLPIIMIT 1938 >gi|157960382|ref|YP_001500416.1| two component Fis family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845382|gb|ABV85881.1| two component transcriptional regulator, Fis family [Shewanella pealeana ATCC 700345] Length = 179 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 50/87 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN K+L+ EDD + L + + K G+E C++ + R+ + +L D+ + + + Sbjct: 1 MNNKLLIIEDDTALANVLARRMTKQGFECQQCHDASQGLLLARQFRPTHVLLDMKLEQEN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVA 87 G++L +L PD+ ++ +TG+A++A Sbjct: 61 GLKLISPLRQLLPDVTMVLLTGYASIA 87 >gi|189424628|ref|YP_001951805.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter lovleyi SZ] gi|189420887|gb|ACD95285.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter lovleyi SZ] Length = 452 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 64/112 (57%), Gaps = 2/112 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIE 63 +LL +D+ ++ + L + L + + +V+ +G A + + +++L+D+ MP M+G E Sbjct: 15 VLLVDDEPNILQALQRLLRRETFRIVTAASGTEALQLLSQLRGVAVILSDMRMPAMNGAE 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEV 114 +R+ E P+ M +TG++ ++ D+ N ++ LSKP++ DL+ V Sbjct: 75 FLKRSREFAPESVRMLLTGYSDISDAVDAVNQGGISRYLSKPWNDTDLLQAV 126 >gi|116748273|ref|YP_844960.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697337|gb|ABK16525.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 567 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K++L +DD ++R + L +G+EV++ +G + + + +++TDI P +DG E Sbjct: 59 KVVLIDDDPEIRETIGGVLQDSGHEVLTAGDGDAGMELCERQSPDIVITDIRHPGIDGFE 118 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR PD++V+ +T + + L + + ++KP L V R Sbjct: 119 ILRRIKTGRPDVEVIVMTVLSEIELAIQALHLDASDFITKPIANDALTVAVKR 171 >gi|83647407|ref|YP_435842.1| chemotaxis signal transduction protein [Hahella chejuensis KCTC 2396] gi|83635450|gb|ABC31417.1| Chemotaxis signal transduction protein [Hahella chejuensis KCTC 2396] Length = 314 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR---------EEPFSLLL 51 + K+L+ +D RR ++ + G EVV+ N+G A D +R ++ SL++ Sbjct: 179 IEHKVLVVDDSTVARRQIVHCMDAVGVEVVTKNDGRQALDYLRSLVADGSRIDDHLSLMI 238 Query: 52 TDIVMPEMDGIELARRATELDPDLKVMFI 80 +D+ MPEMDG L DP LK ++I Sbjct: 239 SDVEMPEMDGYTLTTNCKN-DPSLKDLYI 266 >gi|66044043|ref|YP_233884.1| response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|71734162|ref|YP_273089.1| chemotaxis protein CheY [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483990|ref|ZP_05638031.1| chemotaxis protein CheY [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626913|ref|ZP_06459867.1| chemotaxis protein CheY [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650983|ref|ZP_06482326.1| chemotaxis protein CheY [Pseudomonas syringae pv. aesculi str. 2250] gi|298485495|ref|ZP_07003579.1| Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302189175|ref|ZP_07265848.1| chemotaxis protein CheY [Pseudomonas syringae pv. syringae 642] gi|63254750|gb|AAY35846.1| Response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|71554715|gb|AAZ33926.1| chemotaxis protein CheY [Pseudomonas syringae pv. phaseolicola 1448A] gi|298160001|gb|EFI01038.1| Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320326044|gb|EFW82101.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str. B076] gi|320330209|gb|EFW86194.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str. race 4] gi|330867351|gb|EGH02060.1| chemotaxis protein CheY [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880448|gb|EGH14597.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str. race 4] gi|330890722|gb|EGH23383.1| chemotaxis protein CheY [Pseudomonas syringae pv. mori str. 301020] gi|330900451|gb|EGH31870.1| chemotaxis protein CheY [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943042|gb|EGH45485.1| chemotaxis protein CheY [Pseudomonas syringae pv. pisi str. 1704B] gi|330954310|gb|EGH54570.1| chemotaxis protein CheY [Pseudomonas syringae Cit 7] gi|330971849|gb|EGH71915.1| chemotaxis protein CheY [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977434|gb|EGH77381.1| chemotaxis protein CheY [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330987696|gb|EGH85799.1| chemotaxis protein CheY [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013009|gb|EGH93065.1| chemotaxis protein CheY [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 122 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + AL AGY+V+ +G A K+ + L+++D+ MP MD Sbjct: 1 MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLTGQKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + +L ++ +T + + + A + KPF ++ V++L+ Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 >gi|83747390|ref|ZP_00944430.1| Hypothetical Protein RRSL_02911 [Ralstonia solanacearum UW551] gi|83725977|gb|EAP73115.1| Hypothetical Protein RRSL_02911 [Ralstonia solanacearum UW551] Length = 645 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + K+LL EDDD + + + + LG + V G +A VRE +L++ D+++P MD Sbjct: 408 LKTKVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDTAVAAVREHQPALVILDLMLPHMD 467 Query: 61 GIELARR 67 G+E+ RR Sbjct: 468 GMEVCRR 474 >gi|95931145|ref|ZP_01313869.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132792|gb|EAT14467.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 798 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 38/65 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILLAED+D +R + L Y++ +NG A + +E FSL+L D MP MDG Sbjct: 677 NHRILLAEDNDVNQRLVQLILRPLDYQLTVVSNGQQAVEACEKEEFSLILMDCQMPLMDG 736 Query: 62 IELAR 66 E A+ Sbjct: 737 YEAAQ 741 >gi|332993895|gb|AEF03950.1| two-component system response regulator [Alteromonas sp. SN2] Length = 446 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 46/83 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +DD + R L L GY+V + +G +A K++ + F ++L+D+ MP +DG+ L Sbjct: 11 LLLVDDDKSLLRLLTIRLEGEGYQVTAVEDGNAALRKLQNDAFDVVLSDLRMPGLDGLSL 70 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + D+ V+ +T ++ Sbjct: 71 FEEIMGIRKDIPVILMTAHGTIS 93 >gi|323357334|ref|YP_004223730.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323273705|dbj|BAJ73850.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 326 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE----EPFSLLLTDIVM 56 M + ++ EDD D+R L++ L AG+ VS NG D VR +P L D+ M Sbjct: 7 MLKTAVIVEDDPDIRHLLVEVLEAAGFSTVSVGNG---IDGVRAVIAYQPLITTL-DVNM 62 Query: 57 PEMDGIELARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 P +DG E ARR + D ++ +TG A V L + A + + KPF R+L Sbjct: 63 PGIDGFEAARRIRQ-QSDTYIIMLTGLEEEADVVLGLGAGA---DEYVVKPFRPRELRAR 118 Query: 114 VNRLL 118 + LL Sbjct: 119 IEALL 123 >gi|313500372|gb|ADR61738.1| Two component, sigma54 specific, Fis family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 444 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R + + L +G+ V + + + + ++++D+ MP MD Sbjct: 1 MLNSVIVVDDEASIRTAVEQWLSLSGFSVQLFAHAEACLAHLPQHFPGVIISDVRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R DPDL V+ +TG V + ++ L KPF +DL+ + R L Sbjct: 61 GLQLLERLQANDPDLPVILLTGHGDVPMAVEAMRMGAYDFLEKPFTPQDLLGSLRRAL 118 >gi|311105901|ref|YP_003978754.1| transcriptional regulator FixJ 1 [Achromobacter xylosoxidans A8] gi|310760590|gb|ADP16039.1| transcriptional regulatory protein FixJ 1 [Achromobacter xylosoxidans A8] Length = 208 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ + + +DD+ +R L L GY V + +G S + +L+ D+ MP M Sbjct: 6 LSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGESFLEDYDASQIGVLIADVRMPGMS 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL + + L ++FITG V + + L KPF+ DL V R+L Sbjct: 66 GLELQEQLLARNAPLPIVFITGHGDVPMAVSTMKKGAVDFLEKPFNESDLREIVARML 123 >gi|299132630|ref|ZP_07025825.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298592767|gb|EFI52967.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 234 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY +++ +GASA D + P + + DI MP MDG+E Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFKTSPPDMAILDIKMPRMDGMET 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIRKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|260170861|ref|ZP_05757273.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1384 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ DMR + I+++ + Y V+ +G A + P +++D++MP MDG+EL Sbjct: 1133 ILVVEDNVDMRGY-IRSILREQYNVLEAADGEEALHILNSNPVDFIISDLMMPVMDGVEL 1191 Query: 65 ARRATE 70 +RR + Sbjct: 1192 SRRVKD 1197 >gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 253 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+A+D+ +RR L L GY VV+ +G A + E L++ D++MP ++G Sbjct: 14 EKILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGY 73 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + ++ + D+ ++ +T VA L+KPF ++L ++ +L Sbjct: 74 GVCQKIRAIS-DIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAIL 128 >gi|209886684|ref|YP_002290541.1| transcriptional regulatory protein ChvI [Oligotropha carboxidovorans OM5] gi|209874880|gb|ACI94676.1| transcriptional regulatory protein ChvI [Oligotropha carboxidovorans OM5] Length = 234 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY +++ +GASA D + P + + DI MP MDG+E Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFKTSPPDMAILDIKMPRMDGMET 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADD-------FIRKPFSQRLLVERVKAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|144897683|emb|CAM74547.1| chemotaxis protein CheY [Magnetospirillum gryphiswaldense MSR-1] Length = 121 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L +D MR + L AGY VV +G +A ++ + +++TD+ MPEMD Sbjct: 1 MAKCVLAVDDSKTMRDMVSFTLRGAGYTVVEAEHGVAALKVLQGQKVDVIITDVNMPEMD 60 Query: 61 GIELARRATEL 71 GI L RR L Sbjct: 61 GITLVRRVRGL 71 >gi|21240982|ref|NP_640564.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106268|gb|AAM35100.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 475 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62 I + +DD +R L AL AGY V ++ A+A + P LL TD+ MP DG+ Sbjct: 9 HIWVVDDDRSVRFVLSTALRDAGYAVDGFDSAAAALQALGMRPTPDLLFTDVRMPGEDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + P L V+ ++ + VA + + LSKPF L D V R L Sbjct: 69 TLLDKLKSKHPHLPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAARAL 124 >gi|56965315|ref|YP_177047.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911559|dbj|BAD66086.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 224 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 58/105 (55%), Gaps = 5/105 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ + + + L + GY+ N+G +A ++E+ F L++ DI+MP ++G+ Sbjct: 2 EHILIVDDEIQITSIVGELLQEEGYQTTVANDGMNAIKLIKEQDFDLIILDIMMPYVNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK--NAKVLSKPF 105 ++ R E D+ ++F+T A ++N N ++KPF Sbjct: 62 DVCRSVREF-TDVPILFVT--ARTSMNDQINGLNIGGDDYINKPF 103 >gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation) [Geobacillus kaustophilus HTA426] gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 235 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L KAG+ VV+ ++G A KV E +L++ D+++P++D Sbjct: 1 MGRKILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+++ +R + ++ +T + L D ++KPF R+++ Sbjct: 61 GVDVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADD-------YMTKPFSPREVIAR 113 Query: 114 VNRLL 118 V +L Sbjct: 114 VKAIL 118 >gi|320353158|ref|YP_004194497.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121660|gb|ADW17206.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 443 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 42/83 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ R L L K GY V NG A + +P L+L D MP+M+G E Sbjct: 2 RILIVDDEPLQRDMLSGFLKKQGYTVHEAANGTEALSQFMRQPIDLVLLDHRMPDMNGDE 61 Query: 64 LARRATELDPDLKVMFITGFAAV 86 + R P +V+ IT + AV Sbjct: 62 VLARIKAQSPLARVIMITAYGAV 84 >gi|304312238|ref|YP_003811836.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797971|emb|CBL46193.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 939 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N +IL+AED ++ + + + G + NG A ++ R + L+L D MPEMD Sbjct: 805 LNLRILIAEDHPLSQKVINGMMQRLGVKSKLVINGVQAVEEARRGKYDLILMDCDMPEMD 864 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVN 112 G E ARR E + + I A A D + ++ LSKP L +L N Sbjct: 865 GFEAARRIREWEAQSQRTAIPIIALTAHIMDEHKERSLASGMNAHLSKPIELNELRN 921 Score = 40.4 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 10/116 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPE 58 ++L+ +D+ R + + G +V + NG A +R EEPF +++ D MP Sbjct: 662 RMLVVDDNASCRLVIQQQAAGWGVQVTTAVNGKQAMALLRSQTNLEEPFDVVILDHDMPG 721 Query: 59 MDGIELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDL 110 M G++LA R E DP + + + A+ P + +NA ++++KP R L Sbjct: 722 MSGLDLAARIKE-DPLIYNNLLVLMLASPNSAPAATLVRNAGVRRIIAKPITGRML 776 >gi|300114785|ref|YP_003761360.1| Fis family two component sigma54 specific transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540722|gb|ADJ29039.1| two component, sigma54 specific, transcriptional regulator, Fis family [Nitrosococcus watsonii C-113] Length = 449 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGIE 63 +L+ E + +R L L AG+ V S G +A ++ + + LLL+DI +D Sbjct: 6 VLVVEHEPALREALCATLSVAGFPVKSVPEGKAALAQLEKNKHIGLLLSDIQTQPLDSST 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RRA PDL V+FI + + D+ L KPF L++ V R + + Sbjct: 66 LLRRARTQKPDLPVLFIAAHSTIRTAIDALDEGAVDYLLKPFETNVLLDRVRRYVRV 122 >gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 DG+ + + + D+ ++F+T Sbjct: 61 DGLSVCKEIRKT-SDVPIIFLT 81 >gi|283853390|ref|ZP_06370636.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] gi|283571203|gb|EFC19217.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] Length = 482 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 56/113 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R+ + L GY V + ++G + VRE L++ D+ MP + G+E Sbjct: 7 QILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMPGISGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E +P L V+ +T F + ++ + KPF + +++ + + Sbjct: 67 AYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEK 119 >gi|270159560|ref|ZP_06188216.1| sigma-54 dependent response regulator FleR [Legionella longbeachae D-4968] gi|289165644|ref|YP_003455782.1| two-component response regulator [Legionella longbeachae NSW150] gi|269987899|gb|EEZ94154.1| sigma-54 dependent response regulator FleR [Legionella longbeachae D-4968] gi|288858817|emb|CBJ12731.1| putative two-component response regulator [Legionella longbeachae NSW150] Length = 437 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 58/117 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD +R L + + +G+ ++ NG A + S++L+DI M EMDG +L Sbjct: 4 VLIVEDDPVLREALAETMTISGHTYITAKNGKEALVLLEIHNPSVVLSDIRMDEMDGNQL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P L V+ +T + +V + L KPF + L ++N+ + ++ Sbjct: 64 LSEIQKKRPGLPVILMTAYGSVQDAVTAIHHGAVDYLQKPFSAQVLTEKINQYIKVE 120 >gi|238063933|ref|ZP_04608642.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237885744|gb|EEP74572.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 318 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D+ RF+ L G+EV+ ++G A + + + L + D++MP +DG+EL Sbjct: 11 ILVVDDDADIARFVEFNLRLHGFEVIHASDGQEALEVIERQRPDLAVVDLMMPRIDGLEL 70 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA + L V+ +T + L KPF +LV V+ L Sbjct: 71 TRRLRANPMTSALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTL 126 >gi|221369316|ref|YP_002520412.1| CheY4 protein [Rhodobacter sphaeroides KD131] gi|221162368|gb|ACM03339.1| CheY4 protein [Rhodobacter sphaeroides KD131] Length = 121 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L +D +R + L +AGYEV+ ++G A + P +LTD MP +D Sbjct: 1 MTKTVLAVDDSPSIRCMVALTLREAGYEVIEASDGQEALELAHSRPVDAILTDQNMPRLD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ R R+ ++F++ +A L ++ A + KPF L+ + +LL Sbjct: 61 GLGFIRAFRSRPEGKGTPIVFLSTESADTLKAEARAAGALGWMVKPFTQAQLLAVMKKLL 120 >gi|168178399|ref|ZP_02613063.1| regulatory protein VanR [Clostridium botulinum NCTC 2916] gi|182670659|gb|EDT82633.1| regulatory protein VanR [Clostridium botulinum NCTC 2916] gi|322805312|emb|CBZ02876.1| two component transcriptional regulator, winged helix family [Clostridium botulinum H04402 065] Length = 236 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+R L L Y ++ NG A + + E L+L D++MP MDGIE+ Sbjct: 4 ILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNTLHENEIHLILLDVMMPIMDGIEV 63 Query: 65 ARR 67 A++ Sbjct: 64 AQK 66 >gi|121595866|ref|YP_987762.1| CheA signal transduction histidine kinase [Acidovorax sp. JS42] gi|120607946|gb|ABM43686.1| CheA signal transduction histidine kinase [Acidovorax sp. JS42] Length = 2026 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +RR + L + GY V +G A ++++EE +++L+DI MP MDG +L Sbjct: 1902 ILVVDDSITVRRVTQRLLQREGYRVALAADGLQALERLQEERPAVVLSDIEMPRMDGFDL 1961 Query: 65 AR--RATELDPDLKVMFIT 81 AR R+ DL ++ IT Sbjct: 1962 ARNIRSDAALQDLPIIMIT 1980 >gi|91202504|emb|CAJ72143.1| strongly similar to sigma 54 response regulatory protein [Candidatus Kuenenia stuttgartiensis] Length = 448 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 56/101 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD + LI+ L + GY V ++G A +++ E F +++TD+ +P M G+ Sbjct: 5 KLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGMGGLS 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 L + + + + ++ +T ++++ ++ + L+KP Sbjct: 65 LLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKP 105 >gi|325496973|gb|EGC94832.1| hybrid sensory histidine kinase TorS [Escherichia fergusonii ECD227] Length = 912 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 4/82 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63 +LL ED+ +R ++ L +G +VV+ N A A + ++ EPF+ L D +P++DGI Sbjct: 684 LLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQAIEALQNSEPFAAALVDFDLPDIDGIT 743 Query: 64 LARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 744 LARQLAQQYPSL---VLIGFSA 762 >gi|312131048|ref|YP_003998388.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907594|gb|ADQ18035.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1336 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++QK+L+ ED++D+R +L+ +L + +E S NG DK + ++L+D++MP M+ Sbjct: 1082 LDQKLLIVEDNEDLRNYLV-SLFHSHFETHSAANGKEGMDKALQILPDIILSDVMMPVMN 1140 Query: 61 GIELARR 67 G+E R Sbjct: 1141 GLEFCER 1147 >gi|302340473|ref|YP_003805679.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301637658|gb|ADK83085.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 149 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 10 DDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67 DDD M L+KA ++ + ++ A + ++ E LL+ DIVMP MDGI L R Sbjct: 14 DDDPMVLALLKAYLSPLKMLDIQTVDSAPKALEIIKHEKIHLLILDIVMPTMDGITLLRE 73 Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 A ++DP V+ +T A + DS + KPF Sbjct: 74 AKKIDPLTHVVMMTSDATLGRVIDSLGSGALDFVMKPFQ 112 >gi|298485926|ref|ZP_07004002.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159615|gb|EFI00660.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 839 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 716 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPGINGTDL 775 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 776 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 816 >gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMDG E Sbjct: 5 RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + D D+ ++ +T L KPF +LV V LL Sbjct: 65 LCRELRDYD-DVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALL 118 >gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 224 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR + P L + ++ D+ A ++KPFHL +++ + LL Sbjct: 62 VLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHLEEVLARIRALL 116 >gi|227540473|ref|ZP_03970522.1| two-component system sensor histidine kinase/response [Sphingobacterium spiritivorum ATCC 33300] gi|227239797|gb|EEI89812.1| two-component system sensor histidine kinase/response [Sphingobacterium spiritivorum ATCC 33300] Length = 1268 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + +L+ ED+ D+ FL+K+L + Y+V + NG E L+++D+ MP+MD Sbjct: 1087 LKRSLLIVEDNRDVADFLLKSL-ELEYDVYTAANGEEGVQMALEILPQLIISDVSMPKMD 1145 Query: 61 GIELAR--RATELDPDLKVMFITGF-AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+EL R ++ + V+ +T V + A NA ++ KPF ++ L+ +++ Sbjct: 1146 GVELTRILKSDPATSHIPVILLTAMDKEVQITAGYLAKANAYII-KPFSIQVLLLQISNQ 1204 Query: 118 L 118 L Sbjct: 1205 L 1205 >gi|227551073|ref|ZP_03981122.1| possible response regulator [Enterococcus faecium TX1330] gi|257896695|ref|ZP_05676348.1| transcriptional regulator [Enterococcus faecium Com12] gi|227179771|gb|EEI60743.1| possible response regulator [Enterococcus faecium TX1330] gi|257833260|gb|EEV59681.1| transcriptional regulator [Enterococcus faecium Com12] Length = 147 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MDG + Sbjct: 20 RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 79 Query: 64 L--ARRATELDPDLKVMFITGFA 84 L + R+T D V+ IT A Sbjct: 80 LLDSLRSTRFDT--PVLMITAKA 100 >gi|215433483|gb|ACJ66707.1| sigma-54 dependent DNA-binding response regulator [Myxococcus fulvus HW-1] Length = 474 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R+ L L + G++V NG + + +++TD+VMP++ G+E Sbjct: 3 KVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + +PD+ V+ IT V D+ ++KPF +L + V + Sbjct: 63 VLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAK 115 >gi|218658439|ref|ZP_03514369.1| response regulator receiver protein [Rhizobium etli IE4771] Length = 124 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL +D +R L AGY V +GA + F L++TD+ MP MD Sbjct: 3 MSANILTVDDSASIRLTTKVTLTNAGYSVTEAADGAEGLATAKGSRFDLIVTDLNMPVMD 62 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ + +L + ++F+T + L + A L+KPF +LV V ++L Sbjct: 63 GLTMIEELRKLPGQAGVPIIFLTTESDADLKARAKAAGATGWLTKPFDPENLVKIVKKVL 122 >gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 DG+ + + + D+ ++F+T Sbjct: 61 DGLSVCKEIRKT-SDVPIIFLT 81 >gi|120603446|ref|YP_967846.1| Fis family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120563675|gb|ABM29419.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris DP4] Length = 467 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 ++ IL+ +D+ D L + + + V +GA A ++ +LLLTD+ MP+M Sbjct: 6 DEHILIVDDEPDFAHGLARLVSRDFPAASVSVALSGAEALHIIQGSGVALLLTDLRMPDM 65 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+EL ++A +DP V+ +T ++ + L+KP +L +N+ L Sbjct: 66 DGMELMQQAMTVDPTTSVILLTAHGSIETAVAALKNGAYDFLTKPVRREELQRTLNKAL 124 >gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 245 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ +R + L +G+EV+ N A + L+++DI+MP MDG + Sbjct: 17 RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTTQPQLIISDIMMPGMDGYQ 76 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + +LDP L V+F+T A + D A V L KPF +LV V+ L+ Sbjct: 77 FLAQVRKLDPYSHLPVVFLT---AKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLI 133 >gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] Length = 226 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 54/118 (45%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++++L+ EDD + R FL K + G+ V +G + F ++ D ++P +D Sbjct: 1 MSRRVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + + V+ +T +AV L KPF ++L+ V LL Sbjct: 61 GLALIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALL 118 >gi|21227429|ref|NP_633351.1| chemotaxis protein [Methanosarcina mazei Go1] gi|20905796|gb|AAM31023.1| Chemotaxis protein [Methanosarcina mazei Go1] Length = 141 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++++ +D + MR + L K G+EVV+ ++G A E L+L DI+MP+MDG Sbjct: 23 RVMIVDDAEFMRMVIRDILLKHGHEVVAEVSDGEEAVQTYLEVKPDLVLMDIIMPDMDGK 82 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E ++ +DP KV+ + AL +S + KPF +++ + ++ Sbjct: 83 EALQKLLLIDPAAKVVMCSSLGQQALITESMKIGAMGFIVKPFEPESMLDVIRKI 137 >gi|148549527|ref|YP_001269629.1| Fis family two component sigma-54 specific transcriptional regulator [Pseudomonas putida F1] gi|148513585|gb|ABQ80445.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pseudomonas putida F1] Length = 444 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ +D+ +R + + L +G+ V + + + + ++++D+ MP MD Sbjct: 1 MLNSVIVVDDEASIRTAVEQWLSLSGFSVQLFAHAEACLAHLPQHFPGVIISDVRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++L R DPDL V+ +TG V + ++ L KPF +DL+ + R L Sbjct: 61 GLQLLERLQANDPDLPVILLTGHGDVPMAVEAMRMGAYDFLEKPFTPQDLLGSLRRAL 118 >gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. CB0205] Length = 253 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D++++RR L L G+EV NGA A + R +++ D++MPE+DG Sbjct: 11 KILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPELDGFA 70 Query: 64 LARRATELDPDLKVMFITGFAAVA 87 + R ++ ++ +T VA Sbjct: 71 VTER-IRAQSEVPIILLTALGDVA 93 >gi|317504746|ref|ZP_07962706.1| two component system sensor histidine kinase [Prevotella salivae DSM 15606] gi|315664128|gb|EFV03835.1| two component system sensor histidine kinase [Prevotella salivae DSM 15606] Length = 1319 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ ED+DD+R+ L+ L + V+ +G + R+ ++++D++MP + G Sbjct: 1068 NATILIVEDNDDIRQLLVTVLSPY-FHTVTAVDGREGLEVTRDVMPDIIISDVLMPHLSG 1126 Query: 62 IELARRATELDPDLKVMFITGF---AAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVNR 116 +EL + E DL + I A ALN + K ++KPF+ LV+ N Sbjct: 1127 LELCKMIKE---DLSICHIPVILLTAQTALNQELEGLKIGADDYITKPFNNEVLVSRCNN 1183 Query: 117 LL 118 L+ Sbjct: 1184 LI 1185 >gi|311693316|gb|ADP96189.1| two-component response regulator NtrC [marine bacterium HP15] Length = 475 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 57/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL +AG + ++G S ++ E +++DI MP +DGI L Sbjct: 7 VWIIDDDRSIRWVLERALNQAGMQPRVFDSGESIMMRLEHEQPDAIVSDIRMPGVDGITL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ PD+ V+ +T + + S + L KPF + D V V R Sbjct: 67 LSQIVDVHPDVPVIIMTAHSDLESAVTSYQTGAFEYLPKPFDVDDAVALVKR 118 >gi|291612754|ref|YP_003522911.1| serine/threonine protein kinase [Sideroxydans lithotrophicus ES-1] gi|291582866|gb|ADE10524.1| serine/threonine protein kinase [Sideroxydans lithotrophicus ES-1] Length = 626 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 LL DD++ +K+L + Y V + +G A D + P ++++D MP M G+EL Sbjct: 333 LLIVDDEERILTALKSLFRQRYHVFTTTDGNKALDFITRYPMHVIISDQRMPIMLGVELL 392 Query: 66 RRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR+ E+ P+ + +TG++ +A S N + + ++KP+ + L V TI Sbjct: 393 RRSREISPNSVRILLTGYSDLASIVGSINDGEVYRFINKPWDNQSLQTIVGEAATI 448 >gi|284046586|ref|YP_003396926.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950807|gb|ADB53551.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 224 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD +R L G+EV +G + D R EPF + L D+++P +DGI Sbjct: 7 RVLFVEDDPTIRETTALVLETFGFEVRVTADGQAGLDAFRAEPFHVALLDVMLPRIDGIS 66 Query: 64 LARRATELDP 73 L R E P Sbjct: 67 LVRMIRETSP 76 >gi|258646937|ref|ZP_05734406.1| DNA-binding response regulator [Dialister invisus DSM 15470] gi|260404378|gb|EEW97925.1| DNA-binding response regulator [Dialister invisus DSM 15470] Length = 256 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 17/96 (17%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE---------VVSCNNGASAYDKVREEP-FSLLLTD 53 KIL+A+D+ + A G+ YE V C+NG S D ++ P L+ D Sbjct: 10 KILIADDE-------LPARGELKYELSTIPNVKIVGECSNGKSVLDFLKTHPNVDLIFLD 62 Query: 54 IVMPEMDGIELARRATELDPDLKVMFITGFAAVALN 89 I MP M+G+E A++ E+D K++F TG+ A+ Sbjct: 63 IEMPVMNGLETAKKIGEMDIPAKIVFATGYGQFAIQ 98 >gi|302346694|ref|YP_003814992.1| response regulator receiver domain protein [Prevotella melaninogenica ATCC 25845] gi|302150766|gb|ADK97027.1| response regulator receiver domain protein [Prevotella melaninogenica ATCC 25845] Length = 235 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L G++ C +G Y + + + + D++MP+ DG Sbjct: 6 KILLCEDDENLGTLLSEYLQAKGFQADLCPDGEVGYRAFLKSKYDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T + ++KPF + +LV + +L Sbjct: 66 LAQEIRQANAEVPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|238788612|ref|ZP_04632404.1| Sensor kinase protein rcsC [Yersinia frederiksenii ATCC 33641] gi|238723207|gb|EEQ14855.1| Sensor kinase protein rcsC [Yersinia frederiksenii ATCC 33641] Length = 949 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 43/81 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 828 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALAVLSTNDVDIVLTDVNMPNMDGYR 887 Query: 64 LARRATELDPDLKVMFITGFA 84 L +R +L+ + V+ +T A Sbjct: 888 LTQRLRQLNQNFPVIGVTANA 908 >gi|300774366|ref|ZP_07084230.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300507010|gb|EFK38144.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 227 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 11/120 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL AEDD + FL++ ++ Y++ ++G SA + + F + L DI+MP M+G E Sbjct: 5 KILYAEDDKTIA-FLVEDSLESYYDISCYSDGESALEAFNSQNFDICLLDIMMPGMNGFE 63 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 +A++ + ++ ++FI+ A AL D K K+ L KPF + +L+ ++ L Sbjct: 64 VAQQIRSKNAEIPIIFIS---AKALKEDR--IKGLKIGADDYLVKPFSIEELMLKIEVFL 118 >gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B] gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B] Length = 1947 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMPEMD 60 IL+ +D+ R L L G+++ + + G A + ++ +EPF L++ D MP +D Sbjct: 1465 ILVVDDNQSAREILAAILESLGFQIKTASGGRQAVEMIKAADADEPFKLVMLDWRMPGLD 1524 Query: 61 GI---ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ +L + T L K++ IT F + + + L+KP L++E+ R Sbjct: 1525 GVQTGQLIQEDTTLKNQPKIIMITAFGREEMQEGAGGLAISGFLTKPATASSLLDEIMRA 1584 Query: 118 L 118 + Sbjct: 1585 M 1585 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED++ + ++ L G V NNG A D + F +L D MP MDG E Sbjct: 1613 QVLLVEDNEINQELAVEILTTHGMTVQVANNGQEALDLIAAHQFDGVLMDCQMPVMDGYE 1672 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R R DL V+ +T A V ++KP +L DL + + ++ Sbjct: 1673 ATRHIRNNPATKDLPVLAMTANAMVGDKEKVIEAGMNDHIAKPINLADLFKTMAKWISPA 1732 Query: 122 N 122 N Sbjct: 1733 N 1733 >gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51] gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +NQ IL+ ED++ + RF+ LG GY V +G + + F L+L D+++P+++ Sbjct: 5 LNQSILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLPKLN 64 Query: 61 GIELARR 67 G E+ RR Sbjct: 65 GTEVLRR 71 >gi|115526070|ref|YP_782981.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115520017|gb|ABJ08001.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 4/115 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMP-EMDGI 62 IL+ EDDD +R+ + L GY+V+ NG A + +L+ +D+VMP + G Sbjct: 895 ILVVEDDDHVRKIAVMNLEALGYKVLEAGNGVEAKSIISGTHDITLVFSDVVMPGGISGY 954 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +LA+ P LKV+ TG +++ D + +L KP+ L ++ L Sbjct: 955 DLAKWIQTERPGLKVLLATGHNDLSV--DDTLRSSLPLLGKPYKRSQLARAISEL 1007 >gi|77406220|ref|ZP_00783289.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77175170|gb|EAO77970.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ + L + GY+ ++ +NG A + + E L++TDI+MP MDG + Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + ++ ++ +T + + + KP L++L + LL Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGXDDYMVKPVQLQELALRIKALL 117 >gi|75760000|ref|ZP_00740067.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492519|gb|EAO55668.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 117 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 DG+ + + + D+ ++F+T Sbjct: 61 DGLSVCKEIRKT-SDVPIIFLT 81 >gi|320353214|ref|YP_004194553.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320121716|gb|ADW17262.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfobulbus propionicus DSM 2032] Length = 442 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD+ +R + + L GY VV +G +A +KV E+ F L++ DI MP +DG + Sbjct: 13 ILIVDDDEVIRMLMRQFLEAEGYAVVEAEDGRAALEKVAEQSFDLVILDIAMPGIDGPSV 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R++ DP V+ IT S + KP L N + +L Sbjct: 73 CEHIRSSMTDPP-PVLMITALDDEKSIERSYGAGAVDYIRKPLRWAVLKNRIRYIL 127 >gi|270262846|ref|ZP_06191117.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043530|gb|EFA16623.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 224 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ +L KAL AG+ V +G +A + E ++L++ D+ +P ++G++ Sbjct: 2 RLLLVEDHPELSHWLQKALTGAGFAVDIAPDGLAADHLLLNERYALVVLDVALPRLNGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + DL V+ +T VA L+KPF L +L + LL Sbjct: 62 LLARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALL 116 >gi|255535459|ref|YP_003095830.1| Sigma-54 dependent transcriptional regulator/response regulator [Flavobacteriaceae bacterium 3519-10] gi|255341655|gb|ACU07768.1| Sigma-54 dependent transcriptional regulator/response regulator [Flavobacteriaceae bacterium 3519-10] Length = 394 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 QKIL+ ED+ + L L YE +G ++ +E F+L+++DI MP++ Sbjct: 2 QKILIVEDEKAISGVLQSILSDELPEYEFFIAEDGLDGLKQIEKEDFALVVSDIKMPKLS 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT- 119 G EL ++A ++ P+ + I+G A + +SKP ++NRL+T Sbjct: 62 GTELLKQALQIKPETTFVMISGHADIDTAVACLKEGAYDFISKPV-------DINRLITS 114 Query: 120 IKN 122 +KN Sbjct: 115 VKN 117 >gi|261414807|ref|YP_003248490.1| response regulator receiver protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371263|gb|ACX74008.1| response regulator receiver protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 124 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 13/122 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD + L AL GY V + +NG A ++ + +++TDI+MPE DG E+ Sbjct: 4 ILIIDDDAQLNLMLKSALELKGYTVDTASNGKKAKTLYQKNTYDVIITDIIMPEGDGFEV 63 Query: 65 ARRATELDPDLKVMFITG--------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + + + I+G + A A + D A + SKP L+ L N+V+ Sbjct: 64 VLDLRRMGMSDRTIAISGGGRTSAEDYLATAQHFDV-----AAIFSKPLDLQQLRNKVDE 118 Query: 117 LL 118 ++ Sbjct: 119 II 120 >gi|238025198|ref|YP_002909430.1| response regulator receiver domain-containing protein [Burkholderia glumae BGR1] gi|237879863|gb|ACR32195.1| Response regulator receiver domain protein(CheY) [Burkholderia glumae BGR1] Length = 120 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ D+ L + GY V + +NGA A D++RE L++TD +MP M G Sbjct: 2 KTILIVDDEFDVLTVWRLLLEQCGYAVFTASNGALALDRIREGKPDLIVTDFMMPVMSGG 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL--SKPFHLRDLVNEVNRLL 118 EL A +PD + + I +A A D NA +L KP L+ V R L Sbjct: 62 ELC-AALANEPDWRAIPIILCSAAA---DIPPQPNASILYARKPLSFDVLLGMVRRQL 115 >gi|237644063|emb|CAY85453.1| histidine kinase 1 [Claviceps purpurea] Length = 1335 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ +R +K L K + V NG A + V+E+ F ++L D+ MP M G E Sbjct: 1107 EILLAEDNTVNQRLAVKILEKYRHVVTVVGNGWEAVEAVKEKKFDVILMDVQMPIMGGFE 1166 Query: 64 LARRATELDPDLKVMF--ITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + E + + I A A+ D A++ LSKP L+ + + Sbjct: 1167 ATGKIREYERGMGAHRTPIIALTAHAMTGDREKCIQAQMDEYLSKPLQQNHLIQTILKCA 1226 Query: 119 TI 120 T+ Sbjct: 1227 TL 1228 >gi|88602714|ref|YP_502892.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1] gi|88188176|gb|ABD41173.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1] Length = 393 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPEMD 60 + ++L+ +DD +R FL L GYEV + A +++ E P + L+L D++MP Sbjct: 5 DARLLIVDDDPAIREFLKNRLMMEGYEVSEAEDAEKALERLEEHPDTDLILLDVIMPGAS 64 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L R E + V+ +T V + L+KPF R+++ + + Sbjct: 65 GFDLLRTLKEDRRYCQIPVIMVTALGLVQDKELAFRLGAGDYLTKPFDTREMLARIGTHI 124 Query: 119 TIK 121 T+K Sbjct: 125 TLK 127 >gi|77460594|ref|YP_350101.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384597|gb|ABA76110.1| putative two-component response regulator [Pseudomonas fluorescens Pf0-1] Length = 243 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +N+ ILL +DD ++R L L +AG++V + +GA + E P L++ D+++P+ D Sbjct: 4 VNKSILLVDDDQEIRELLETYLTRAGFQVRATADGAGFRQALNEAPSDLVILDVMLPDED 63 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L R R + ++ +T + A L KPF R+L + LL Sbjct: 64 GFSLCRWVRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALL 123 >gi|46198770|ref|YP_004437.1| transcriptional regulator [Thermus thermophilus HB27] gi|55980783|ref|YP_144080.1| putative response regulator [Thermus thermophilus HB8] gi|46196393|gb|AAS80810.1| transcriptional regulator [Thermus thermophilus HB27] gi|55772196|dbj|BAD70637.1| putative response regulator [Thermus thermophilus HB8] Length = 120 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ + L KAG+ V G A ++ E P++L++ D+++P +DG + Sbjct: 3 EVLIVDDEESILVPLEFLFRKAGHRVELARTGEEALSRLAERPYALVVLDLMLPGVDGFQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + P KV+ +T A + A L+KPF ++DL+ E RLL Sbjct: 63 VLEALKARTPAPKVLVLTARGREADRAKALALGADAFLAKPFGVQDLMAEARRLL 117 >gi|16264091|ref|NP_436883.1| putative histidine kinase protein [Sinorhizobium meliloti 1021] gi|307300056|ref|ZP_07579841.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] gi|307316591|ref|ZP_07596034.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|15140216|emb|CAC48743.1| putative two-component response regulator [Sinorhizobium meliloti 1021] gi|306897789|gb|EFN28532.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|306904945|gb|EFN35528.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] Length = 121 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++ R L + L + G++V+ NG + + + L+L D+ +P MDG E Sbjct: 3 KILLVEDNEMNRDMLSRRLSRRGFDVLIAENGRAGVELAESQKPDLILMDMSLPVMDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 RR + +P + + A A+ D A SKP L LV ++ +LL I Sbjct: 63 ATRR-IKANPLTSAIPVIALTAHAMASDREMALEAGCDDYDSKPVDLPQLVRKIEQLLAI 121 >gi|17229773|ref|NP_486321.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131373|dbj|BAB73980.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 232 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 67/128 (52%), Gaps = 15/128 (11%) Query: 1 MNQKILLAEDDDDMRR----FLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIV 55 M + IL +D+ ++R + + + YE + +NG A +K++ P LL+TDI Sbjct: 1 MTEYILFVDDEPLIKRLVTHYFRHKIRQGEYEFIFAHNGRDALEKLQANPQIDLLVTDIN 60 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDL 110 MPE+DG+ L + +L+ D+K + ++ + + A+N + ++KP ++L Sbjct: 61 MPEIDGLTLLSKIRDLNLDIKAVIVSAYEDLKNIRRAMNQGA-----FDFITKPIDFQEL 115 Query: 111 VNEVNRLL 118 + +NR L Sbjct: 116 ESTMNRAL 123 >gi|87311734|ref|ZP_01093849.1| probable response regulatory protein (atoC) [Blastopirellula marina DSM 3645] gi|87285518|gb|EAQ77437.1| probable response regulatory protein (atoC) [Blastopirellula marina DSM 3645] Length = 493 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/102 (23%), Positives = 53/102 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ++D + ++L + GY +G +++ + F +++TD+VM E+DGI Sbjct: 22 RILIVDNDKAHALTMCESLERVGYPCTIATSGPEGVERIERDDFEIVITDLVMNEVDGIG 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + ++A P +V+ +TG +++ ++ L KP Sbjct: 82 VLQKAKSNLPGCEVIVVTGHGTISIAVEAMQQGAFNFLEKPL 123 >gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 273 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L L G+EV + NG A R ++ DI++P++DG+E Sbjct: 42 RVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGLE 101 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR D+ V+F+T AV ++KPF L ++V + LL Sbjct: 102 VLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLL 156 >gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 1/109 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ ED+ ++ RF+ YEV +G S ++ + F L+L D+++PEMDG+ Sbjct: 2 KKVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLMLPEMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 E+ +R D ++ IT + + KPF + +L+ Sbjct: 62 EVCKRL-RTQKDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELL 109 >gi|312890606|ref|ZP_07750141.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296905|gb|EFQ74039.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1472 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ D+R FL LG Y + NG + K L+++D++MP MDGI + Sbjct: 1222 LLLVDDNSDLRVFLSGELG-GHYRIELAENGEEGFSKAMHLYPDLIISDVMMPVMDGITM 1280 Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + V+ +T A+V D+ + L+KPF L+ V+ LL +N Sbjct: 1281 LDKLKSHNETSHIPVILLTAKASVENKIDALNFGADQYLTKPFRTEMLLAAVSNLLEQRN 1340 >gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +KIL+ +D++ + + L K GY+ + NG A V+EE L+L D+++P MD Sbjct: 2 LQEKILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G ++ + E+ D + FI A + + ++ ++KPF +R+LV V Sbjct: 62 GYDVCK---EIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVK 118 Query: 116 RLL 118 +L Sbjct: 119 AVL 121 >gi|289678980|ref|ZP_06499870.1| response regulator receiver:ATP-binding region, ATPase-like:stage II sporulation E [Pseudomonas syringae pv. syringae FF5] Length = 568 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + + G+ V+S NG A + E L+L D +MP MDG E Sbjct: 10 ILIADDSTSDRLLLSTIVARQGHRVLSAGNGVEAVAIFKAESPQLILMDAMMPVMDGFEA 69 Query: 65 ARRATELDPD--LKVMFITGFA---AVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 ARR + + + ++F+T A+A D+ +SKP++ L +N +NR Sbjct: 70 ARRIKAMAGESLVPIIFLTSLTEGEALARCLDAGGD---DFMSKPYNPLVLAAKINAMNR 126 Query: 117 L 117 L Sbjct: 127 L 127 >gi|260433832|ref|ZP_05787803.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Silicibacter lacuscaerulensis ITI-1157] gi|260417660|gb|EEX10919.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Silicibacter lacuscaerulensis ITI-1157] Length = 444 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 54/103 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A + + ++++DI MP MDGI+ Sbjct: 6 KIAIVDDEQDMRQSISQWLALSGYDTETFASAEDALKVLGPDYPGIVISDIKMPGMDGIQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 L ++ D L V+ ITG V + ++ L KPF+ Sbjct: 66 LLKKLMGADSTLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFN 108 >gi|222112067|ref|YP_002554331.1| chea signal transduction histidine kinase [Acidovorax ebreus TPSY] gi|221731511|gb|ACM34331.1| CheA signal transduction histidine kinase [Acidovorax ebreus TPSY] Length = 2026 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +RR + L + GY V +G A ++++EE +++L+DI MP MDG +L Sbjct: 1902 ILVVDDSITVRRVTQRLLQREGYRVALAADGLQALERLQEERPAVVLSDIEMPRMDGFDL 1961 Query: 65 AR--RATELDPDLKVMFIT 81 AR R+ DL ++ IT Sbjct: 1962 ARNIRSDAALQDLPIIMIT 1980 >gi|212691103|ref|ZP_03299231.1| hypothetical protein BACDOR_00593 [Bacteroides dorei DSM 17855] gi|212666335|gb|EEB26907.1| hypothetical protein BACDOR_00593 [Bacteroides dorei DSM 17855] Length = 438 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ + + L +AGYE V+ N A +R+ F L+L+D+ +PE D Sbjct: 1 MKRKILIVEDNVGLSQIQKDWLSQAGYEAVTAMNEPIARSLIRKTLFDLILSDVRLPEGD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV 86 GI L + D+ + T + +V Sbjct: 61 GISLLEWLRKEKKDIPFIITTEYVSV 86 >gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA [Mycobacterium abscessus ATCC 19977] gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response transcriptional regulatory protein) [Mycobacterium abscessus] Length = 230 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD +R L ++L GY V +G A + + + L+ D++MP++D Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RR DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 >gi|254285135|ref|ZP_04960101.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae AM-19226] gi|150425138|gb|EDN16915.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae AM-19226] Length = 686 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 568 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMDSQNIDLVLMDIEMPNVGGL 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + + K + I G+ N+PK Sbjct: 628 EATRLIRDSEHEYKNIPIIGYTG------DNSPK 655 >gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family), BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278] Length = 231 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R + AL KAG V +G +A + ++ L++ D+ MPE D Sbjct: 1 MSPRILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVGMPEFD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ RR + ++F++ + + D ++KPF R+LV Sbjct: 61 GLEVCRRIRRTS-QVPILFLSARDEEIDRILGLEIGGDD-------YVTKPFSPRELVAR 112 Query: 114 VNRLL 118 VN +L Sbjct: 113 VNVIL 117 >gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 231 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R + + L +AG+ VV +G +A ++ R +++ DI++P +DG+ + Sbjct: 6 ILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPVLDGLAV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR D ++ +T A + L+KPF R+LV V LL Sbjct: 66 CRRLRTFS-DAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALL 118 >gi|15601282|ref|NP_232913.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586456|ref|ZP_01676243.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae 2740-80] gi|121726128|ref|ZP_01679426.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae V52] gi|153820084|ref|ZP_01972751.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae NCTC 8457] gi|153820961|ref|ZP_01973628.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae B33] gi|227812091|ref|YP_002812101.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae M66-2] gi|254849684|ref|ZP_05239034.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae MO10] gi|298499323|ref|ZP_07009129.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae MAK 757] gi|81543963|sp|Q9KM66|CQSS_VIBCH RecName: Full=CAI-1 autoinducer sensor kinase/phosphatase CqsS; AltName: Full=Cholerae quorum-sensing sensor gi|9657928|gb|AAF96425.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549281|gb|EAX59312.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae 2740-80] gi|121631347|gb|EAX63719.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae V52] gi|126509375|gb|EAZ71969.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae NCTC 8457] gi|126521544|gb|EAZ78767.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae B33] gi|227011233|gb|ACP07444.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae M66-2] gi|254845389|gb|EET23803.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae MO10] gi|297541304|gb|EFH77355.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae MAK 757] Length = 686 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 568 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + K + I G+ N+PK Sbjct: 628 EATRLIRNSEHEYKNIPIIGYTG------DNSPK 655 >gi|148253889|ref|YP_001238474.1| histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406062|gb|ABQ34568.1| histidine kinase [Bradyrhizobium sp. BTAi1] Length = 564 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 61/106 (57%), Gaps = 4/106 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMP-EMDG 61 +ILL EDDD++ + + L + GYEV + A+A + + L+ +D++MP M+G Sbjct: 440 RILLVEDDDEVAALVSEMLRQLGYEVTRAASAAAALGALADGRAVDLVFSDVMMPGGMNG 499 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +ELAR + D+ ++ +G++ A++ A ++LSKP+ + Sbjct: 500 VELAREIQKRRGDVPILLTSGYSGAAVHAAKEA--GVRILSKPYRI 543 >gi|127514610|ref|YP_001095807.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella loihica PV-4] gi|126639905|gb|ABO25548.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella loihica PV-4] Length = 476 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V +++R F LL+ DI +P GIE Sbjct: 33 VLIVDDEPGMRSFLKKALSKK-FALVETAGSVEDAEQLRSRCHFDLLIVDIRLPGRSGIE 91 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 92 WDEALSDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCI 146 >gi|330991173|ref|ZP_08315126.1| Transcriptional regulatory protein ompR [Gluconacetobacter sp. SXCC-1] gi|329761759|gb|EGG78250.1| Transcriptional regulatory protein ompR [Gluconacetobacter sp. SXCC-1] Length = 257 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD MR L++AL GY V +G +D +R + L++ D+++P +G++ Sbjct: 13 RILVVEDDPGMRTLLVRALQGDGYRVRGVQDGPEMWDALRAQGADLIILDVMLPGTNGLD 72 Query: 64 LAR 66 L R Sbjct: 73 LCR 75 >gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 224 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLR 61 Query: 64 LARR 67 + +R Sbjct: 62 VLQR 65 >gi|322436044|ref|YP_004218256.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321163771|gb|ADW69476.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 238 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDD +RR L L G+ + +G A K+ P+ +L D+ MP M GIE Sbjct: 11 VLLVEDDRSIRRGLFATLSAMGFALGEAESGEEALLKLHVLPYDAVLMDLNMPGMGGIEA 70 Query: 65 ARRATELDPDLKVMFIT 81 RR + P + ++ +T Sbjct: 71 CRRVRKEYPHISILVVT 87 >gi|255746700|ref|ZP_05420647.1| sensor histidine kinase CqsS [Vibrio cholera CIRS 101] gi|262151226|ref|ZP_06028363.1| sensor histidine kinase CqsS [Vibrio cholerae INDRE 91/1] gi|255736454|gb|EET91852.1| sensor histidine kinase CqsS [Vibrio cholera CIRS 101] gi|262030993|gb|EEY49620.1| sensor histidine kinase CqsS [Vibrio cholerae INDRE 91/1] Length = 660 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 542 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 601 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + K + I G+ N+PK Sbjct: 602 EATRLIRNSEHEYKNIPIIGYTG------DNSPK 629 >gi|322420564|ref|YP_004199787.1| diguanylate cyclase [Geobacter sp. M18] gi|320126951|gb|ADW14511.1| diguanylate cyclase [Geobacter sp. M18] Length = 459 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD R L + GY V +G A + + + + L++TD+VM ++ G+ Sbjct: 2 ERILLVEDDSFFREVFTDLLKEDGYSVDVAVSGEEALEMIGKGGYHLVVTDLVMRDVSGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 ++ LDP V+ +TG A V Sbjct: 62 DILSEVKRLDPATAVIMVTGHANV 85 >gi|255034368|ref|YP_003084989.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947124|gb|ACT91824.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1327 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ ++ +L + L Y + +G A D ++EE L+++DI+MP MDGI L Sbjct: 1081 VLLVEDNAEILGYLGREL-SLDYNIFRAGDGRQAIDLLQEENIHLVISDIMMPVMDGIAL 1139 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 R E+ D++ I A N S+ + +V + KPF L L +++ LL Sbjct: 1140 CR---EMKNDVRFSHIPIILLTAKNSISSKIEGLEVGADAYIEKPFSLDHLSAQISNLL 1195 >gi|284037394|ref|YP_003387324.1| Fis family transcriptional regulator [Spirosoma linguale DSM 74] gi|283816687|gb|ADB38525.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirosoma linguale DSM 74] Length = 488 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 8/122 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L + L ++GY+V+ +G SA ++ L+L DI+MP MDG E Sbjct: 13 ILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQATFALPDLILLDIMMPGMDGFET 72 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RR AT+ P V+F+T + + ++KPF L+++++ ++ L+ Sbjct: 73 CRRLKQNPATQPIP---VLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHLS 129 Query: 120 IK 121 ++ Sbjct: 130 LR 131 >gi|255033998|ref|YP_003084619.1| response regulator receiver protein [Dyadobacter fermentans DSM 18053] gi|254946754|gb|ACT91454.1| response regulator receiver protein [Dyadobacter fermentans DSM 18053] Length = 385 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL ED+ R + AL +AGY V C + A + E L+L+D MPEM+G Sbjct: 12 KKILLVEDNLLFRTVVEHALVRAGYTCVLCESATEALKMLLVETPDLILSDYDMPEMNGF 71 Query: 63 ELARRATELDP---DLKVMFITGF 83 + R+A L+P D+ +F+T F Sbjct: 72 DF-RQAVLLNPNISDIPFVFLTSF 94 >gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 7/111 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ ++ L + L +AGY V N+G + ++ FSL+L DI+MP++D Sbjct: 1 MIDNILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQYFSLILLDIMMPKID 60 Query: 61 G---IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 G E+ R+ + D+ ++ +T + + ++KPF L+ Sbjct: 61 GYAVCEIIRK----NSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLK 107 >gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001] gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001] Length = 240 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 10/125 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +I + +DD ++R+ L + LG GYEV NG ++ + L++ D+++P DG+ Sbjct: 5 HRIWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQLTARLESQRPDLVVLDLMLPGDDGL 64 Query: 63 ELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L RR + DL V+ +TG + L ++ L+KPF R+L + + Sbjct: 65 CLLRRLRDGGDDLPVLMLTGKGDAVDRIIGLEQGAD-----DYLAKPFLPRELTARIEAV 119 Query: 118 LTIKN 122 L + Sbjct: 120 LRRRG 124 >gi|167751513|ref|ZP_02423640.1| hypothetical protein EUBSIR_02514 [Eubacterium siraeum DSM 15702] gi|167655321|gb|EDR99450.1| hypothetical protein EUBSIR_02514 [Eubacterium siraeum DSM 15702] Length = 225 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 I++AEDD + R+ + L + GYE V +G A D + + L+L D++MP MDG E Sbjct: 3 HIMVAEDDTNTRKLMCTVLKQNGYEPVPAVDGIDALDILDRQHVDLILLDVMMPRMDGYE 62 Query: 64 LARRATELDPDLKVMFITG 82 + E + V+ +T Sbjct: 63 FVKTLREGGCNTPVLMVTA 81 >gi|115372237|ref|ZP_01459547.1| serine/threonine protein kinase PksC [Stigmatella aurantiaca DW4/3-1] gi|115370702|gb|EAU69627.1| serine/threonine protein kinase PksC [Stigmatella aurantiaca DW4/3-1] Length = 643 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 53/86 (61%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDM----RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPE 58 K+L+ +D+ M R+ K + +A YE + +G +K+RE P + ++L+DI MP+ Sbjct: 263 KVLVIDDEPSMEVLMRQRFRKQIREAHYEFIFAVDGLDGLEKLRENPDTDVVLSDINMPK 322 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDG+ R +E++P +KV+ ++ ++ Sbjct: 323 MDGLTFLSRVSEVNPLVKVVIVSAYS 348 >gi|90420574|ref|ZP_01228481.1| transcriptional regulatory protein, heavy metal response [Aurantimonas manganoxydans SI85-9A1] gi|90335302|gb|EAS49055.1| transcriptional regulatory protein, heavy metal response [Aurantimonas manganoxydans SI85-9A1] Length = 233 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +GASA + ++ P +L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILASVSIALENEGYRVETYTDGASALEGLQSRPPNLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------YIRKPFSQRLLVERVRAI 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|78777133|ref|YP_393448.1| LytR/AlgR family transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78497673|gb|ABB44213.1| transcriptional regulator, LytR/AlgR family [Sulfurimonas denitrificans DSM 1251] Length = 232 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 5/116 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D++ R+ LI+ L Y EV + A + +++ F ++ DI MP + GI Sbjct: 2 KILIVDDEELARKRLIRMLLTLKYTEVQEAWDADEAREIFKKDSFDIVFLDINMPRVSGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EL L+PD+ ++F T + AL D A L KP+ + L + R+ Sbjct: 62 ELGYELKYLNPDVGIIFQTAYEEHALKAFDIGA---VAYLVKPYSIEQLQGSIRRI 114 >gi|229506306|ref|ZP_04395815.1| sensor histidine kinase CqsS [Vibrio cholerae BX 330286] gi|229509574|ref|ZP_04399056.1| sensor histidine kinase CqsS [Vibrio cholerae B33] gi|229516605|ref|ZP_04406052.1| sensor histidine kinase CqsS [Vibrio cholerae RC9] gi|229605857|ref|YP_002876561.1| sensor histidine kinase CqsS [Vibrio cholerae MJ-1236] gi|229346486|gb|EEO11457.1| sensor histidine kinase CqsS [Vibrio cholerae RC9] gi|229353524|gb|EEO18462.1| sensor histidine kinase CqsS [Vibrio cholerae B33] gi|229356657|gb|EEO21575.1| sensor histidine kinase CqsS [Vibrio cholerae BX 330286] gi|229372343|gb|ACQ62765.1| sensor histidine kinase CqsS [Vibrio cholerae MJ-1236] Length = 662 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 544 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 603 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + K + I G+ N+PK Sbjct: 604 EATRLIRNSEHEYKNIPIIGYTG------DNSPK 631 >gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ R L AL +AGY V +G + EP+ ++ DI +P++DGI Sbjct: 2 RILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQLDGIT 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + V+ +T ++ D+ A ++KPFH+ +++ V L+ Sbjct: 62 VVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGAD---DYVTKPFHVEEVLARVRALI 116 >gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR P L + ++ D+ A ++KPFHL +++ + LL Sbjct: 62 VLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGAD---DYVTKPFHLEEILARMRALL 116 >gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 241 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+D +RR L L + GY + +G +A K E + L+L D+++P MDG Sbjct: 7 QERILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDG 66 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +++ R R + P V+ +T + + KPF R+LV+ V +L Sbjct: 67 VDVCRELRNKKATP---VIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVL 122 >gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P Sbjct: 2 VGRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTS 61 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 GIELARR EL D+ ++ +T A + N + +V ++KPF R+LV Sbjct: 62 GIELARRLKRDELTGDIPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVAR 116 Query: 114 VNRLL 118 + +L Sbjct: 117 LKAVL 121 >gi|317144875|ref|XP_001820444.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40] Length = 1143 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%) Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIV 55 +NQK +L+ +D+D + L + K G + NG +A +K +E F +L DI Sbjct: 1017 LNQKNIHVLIVDDNDVNLKILATFMRKIGCRYETATNGLAALEKYKECAGQFDYVLMDIS 1076 Query: 56 MPEMDGIELARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 MP MDGI + + E + P +M +TG A+ ++ + A L KP L DL Sbjct: 1077 MPIMDGIVSSSKIREYEEQNSLPRSTIMAVTGVASSSMQQQAFAAGIDDYLVKPLSLHDL 1136 Query: 111 VNEVN 115 +N Sbjct: 1137 KRIMN 1141 >gi|325104532|ref|YP_004274186.1| histidine kinase [Pedobacter saltans DSM 12145] gi|324973380|gb|ADY52364.1| histidine kinase [Pedobacter saltans DSM 12145] Length = 1368 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D+ ++ FL L K Y+V NG A D + + F L+++D++MPE+DGI Sbjct: 1117 EKLLVVDDNYEIVDFLSSHLNK--YQVAVAYNGKQALDILENDSFDLIISDVMMPEIDGI 1174 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 +L ++ + ++ I A N + K + ++KPF + L +V + Sbjct: 1175 QLCKKIKQ---NINTCHIPVILLTAKNETQHQIKGLEAGADDYVTKPFSMSLLTAKVQSI 1231 Query: 118 L 118 L Sbjct: 1232 L 1232 >gi|312885344|ref|ZP_07745005.1| two component, sigma54 specific, transcriptional regulator, Fis family [Mucilaginibacter paludis DSM 18603] gi|311302175|gb|EFQ79183.1| two component, sigma54 specific, transcriptional regulator, Fis family [Mucilaginibacter paludis DSM 18603] Length = 451 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 53/95 (55%), Gaps = 2/95 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D++ +R+ L + L GYEV+ +K+R + ++++D+ +P+M+GI+ Sbjct: 7 KLLIIDDEERLRKLLARILQLEGYEVLEGATAKEGLNKLRNDTIDVVISDVKLPDMNGID 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 L ++ P +++ +T + + N A KN Sbjct: 67 LTKKIKTDYPATEIIVLTAYGTI--NDGVTAIKNG 99 >gi|310817307|ref|YP_003949665.1| serine/threonine protein kinase/response regulator/adenylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|309390379|gb|ADO67838.1| Serine/threonine protein kinase/response regulator/adenylate cyclase [Stigmatella aurantiaca DW4/3-1] Length = 663 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 53/86 (61%), Gaps = 5/86 (5%) Query: 4 KILLAEDDDDM----RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPE 58 K+L+ +D+ M R+ K + +A YE + +G +K+RE P + ++L+DI MP+ Sbjct: 283 KVLVIDDEPSMEVLMRQRFRKQIREAHYEFIFAVDGLDGLEKLRENPDTDVVLSDINMPK 342 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDG+ R +E++P +KV+ ++ ++ Sbjct: 343 MDGLTFLSRVSEVNPLVKVVIVSAYS 368 >gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD ++R L L + G+ + +G A +R+E +L + D++MPE D Sbjct: 1 MRTTILIADDDSNIRELLRFILQREGFRALEAADGEEASRVMRQEDVALAIVDVMMPEKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L D D+ VM +T + + KPF +L+ V LL Sbjct: 61 GLMLCEEIRR-DYDIPVMLLTARGELDDKARGFRSGTDDYMVKPFEPDELLYRVRALL 117 >gi|288802301|ref|ZP_06407741.1| DNA-binding response regulator RprY [Prevotella melaninogenica D18] gi|288335268|gb|EFC73703.1| DNA-binding response regulator RprY [Prevotella melaninogenica D18] Length = 235 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L G++ C +G Y + + + + D++MP+ DG Sbjct: 6 KILLCEDDENLGTLLSEYLQAKGFQADLCPDGEVGYRAFLKSKYDICVLDVMMPKKDGFT 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T + ++KPF + +LV + +L Sbjct: 66 LAQEIRQANAEVPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120 >gi|260772786|ref|ZP_05881702.1| chemotaxis regulator CheY [Vibrio metschnikovii CIP 69.14] gi|260611925|gb|EEX37128.1| chemotaxis regulator CheY [Vibrio metschnikovii CIP 69.14] Length = 122 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ + AL AGY+ + +GA A K++ L+++D+ MP MD Sbjct: 1 MSKTILVVDDSAAIRQVVSLALKGAGYQTIEAIDGADALRKIQGVKVHLVISDVNMPNMD 60 Query: 61 GIELARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G+ L + AT+ P +M T A + A A V+ KPF ++ VN Sbjct: 61 GLTLLKELKKQPATKFTP--VIMLTTESEASKKDQGRLAGAKAWVV-KPFVPDQMLAAVN 117 Query: 116 RLL 118 +L+ Sbjct: 118 KLM 120 >gi|258624828|ref|ZP_05719756.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258582826|gb|EEW07647.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 95 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 48/85 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+I L EDDD +R+ + L AG++V +G SA + ++ F+ +++D+ +P+ DG Sbjct: 3 SQRIALIEDDDIVRQATGQWLQLAGFDVEMFADGTSALAAIEQQSFAAVVSDVRLPDTDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAV 86 + L + P V+ ITG V Sbjct: 63 LSLLVALKNVQPLTPVILITGHGDV 87 >gi|224823765|ref|ZP_03696874.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224604220|gb|EEG10394.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 227 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED D+ R+L +AL +GY V ++G +A ++ EP+ L++ D+ +P + G + Sbjct: 2 RILLVEDQADLARWLARALTASGYVVDVIHDGLNADTALQTEPYDLVVLDLNLPRLSGKD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R L V+ +T ++ + L KPF L +L + LL Sbjct: 62 VLVRLRARHQTLPVLILTAHGELSDKVEGLELGADDYLVKPFELVELEARLKALL 116 >gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD ++ R L AL +AGY V + +G + EP+ ++ DI +PEMDGI Sbjct: 2 RILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPEMDGIT 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGAD---DYVAKPFHVEEVLARIRALI 116 >gi|188591286|ref|YP_001795886.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424] gi|170938180|emb|CAP63166.1| putative response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 229 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDDD + L ++L +GY V NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILIAEDDDVLADGLTRSLRHSGYAVDHVANGLEADSALSTQTFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R L V+ +T +V ++KPF L +L V L+ Sbjct: 62 VLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALV 116 >gi|152971997|ref|YP_001337143.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956846|gb|ABR78876.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1080 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 54/113 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY V +G A +K+ + + LL+TD+ MP+ DG+ L Sbjct: 846 ILIADDHPTNRLLLKRQLSTIGYSVDEACDGEEAENKLASKHYDLLITDLNMPKKDGLAL 905 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A P L + +T A A L KP ++ L +E++RL Sbjct: 906 AASLRRRYPGLVIWGVTASALPQSREACLASGMNMCLFKPVSVQTLSHELSRL 958 >gi|126737684|ref|ZP_01753414.1| nitrogen regulation protein NtrC [Roseobacter sp. SK209-2-6] gi|126721077|gb|EBA17781.1| nitrogen regulation protein NtrC [Roseobacter sp. SK209-2-6] Length = 455 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 63/121 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG V + ++ + V E ++++D+VMP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCRVHATSSLTTLMRWVAEGKGDVVISDVVMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + P L V+ I+ + + + L KPF L +L+ + L+ Sbjct: 61 GLEMLPKIAQDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPELMKRTAKALSE 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|187921572|ref|YP_001890604.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187720010|gb|ACD21233.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1169 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 6/109 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AED+ ++ + + L + G ++G A E PF L+LTDI MPEMDG +L Sbjct: 939 VLVAEDNPLIQNLIAEQLVELGCVPTIAHDGEHALKLFEETPFELVLTDIHMPEMDGYQL 998 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDL 110 +L ++V+ F+AVA + +++ + + ++KP LR+L Sbjct: 999 LAALRKLQATVRVL---AFSAVAEHEEAHNWRERGFSGYVAKPASLREL 1044 >gi|92116579|ref|YP_576308.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799473|gb|ABE61848.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 220 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + + +AL A Y V +G +A + R E + L L D+ +P DG E Sbjct: 2 RILLVEDDQMVGAAVTQALKDAAYAVDWVKDGQTAIEAARAETYDLTLLDLGLPSRDGTE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ L V+ +T A+ L KPF +R+L+ + +L Sbjct: 62 VLRAFRTMNRQLPVIIVTARDAIDDRIHGLDLGADDYLVKPFEIRELLARMRAIL 116 >gi|71277923|ref|YP_270922.1| sigma-54 dependent response regulator [Colwellia psychrerythraea 34H] gi|71143663|gb|AAZ24136.1| sigma-54 dependent response regulator [Colwellia psychrerythraea 34H] Length = 457 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD + R L L AGY+V S N A +++ ++++D+ M MDG+ Sbjct: 14 KILIVDDDPSLLRLLGIRLSAAGYDVESAANAKIALGRLQNFIPQVVISDLRMEGMDGMA 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDS-NAPKNA--KVLSKPFHLRDLVNEVNRLLTI 120 L + P++ V+ +T + PD+ NA K L+KPF ++L++ V + + + Sbjct: 74 LFEQIRIQHPNIPVVIMTAHGTI---PDAINATKQGVFSFLTKPFESQELLDTVEQAIRL 130 Query: 121 K 121 + Sbjct: 131 Q 131 >gi|70729354|ref|YP_259091.1| response regulator [Pseudomonas fluorescens Pf-5] gi|68343653|gb|AAY91259.1| response regulator [Pseudomonas fluorescens Pf-5] Length = 394 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD+ +R L L +G+ V+ NG + L++ D+ MP+M G+EL Sbjct: 8 LLIIDDDEVVRASLAAYLEDSGFSVLQAANGQQGLQVFERDNPDLVICDLRMPQMGGLEL 67 Query: 65 ARRATELDPDLKVMFITG 82 R+ TEL P V+ ++G Sbjct: 68 IRQVTELSPQTPVIVVSG 85 >gi|330998526|ref|ZP_08322347.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329568257|gb|EGG50073.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1341 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ + + K L Y V++ NG A ++++ L+++D++MP MDG L Sbjct: 1094 ILLVDDNTQLLEMMEKILATK-YRVLTAENGLEALEQLKASAVDLIVSDVMMPGMDGFAL 1152 Query: 65 ARR-ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ ++L+ + V+ +T + D L+KPF L+ L ++ LL Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLL 1208 >gi|330003775|ref|ZP_08304762.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Klebsiella sp. MS 92-3] gi|328536808|gb|EGF63119.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Klebsiella sp. MS 92-3] Length = 1080 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 54/113 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY V +G A +K+ + + LL+TD+ MP+ DG+ L Sbjct: 846 ILIADDHPTNRLLLKRQLSTIGYSVDEACDGEEAENKLASKHYDLLITDLNMPKKDGLAL 905 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A P L + +T A A L KP ++ L +E++RL Sbjct: 906 AASLRRRYPGLVIWGVTASALPQSREACLASGMNMCLFKPVSVQTLSHELSRL 958 >gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 222 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R+ + L K G+E + ++G A + +++EP L + D++MP+MDG+ Sbjct: 2 RILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPVDLAIVDVMMPKMDGVT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E+ + V+ +T + + KPF ++L+ V +L Sbjct: 62 LTKNLVEI--GVPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAIL 114 >gi|283778284|ref|YP_003369039.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pirellula staleyi DSM 6068] gi|283436737|gb|ADB15179.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pirellula staleyi DSM 6068] Length = 465 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 44/79 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL A+D+ ++ + L + G+EV C +G +A + + ++ D+ MP M+GI+ Sbjct: 15 KILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMNGIQ 74 Query: 64 LARRATELDPDLKVMFITG 82 + + EL PD + +TG Sbjct: 75 VIGKCKELAPDTDAVVLTG 93 >gi|239905687|ref|YP_002952426.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795551|dbj|BAH74540.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 705 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AEDD + + + + K G+ + N+G A +R E F L+L DI MP +DG+E Sbjct: 575 KILIAEDDKVNQLVISRFVKKIGHIPLCANDGLEALKLLRSEQFDLILMDIQMPNLDGLE 634 Query: 64 LA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 R + E + ++ +T A + LSKP + D+ N +N+ Sbjct: 635 TTLEIRNSHETFSKIPIIALTSHAMRGDREKFISFGMDGYLSKPVIIEDINNVINQ 690 >gi|238896576|ref|YP_002921319.1| putative sensor protein EvgS1 [Klebsiella pneumoniae NTUH-K2044] gi|238548901|dbj|BAH65252.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1080 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 54/113 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY V +G A +K+ + + LL+TD+ MP+ DG+ L Sbjct: 846 ILIADDHPTNRLLLKRQLSTIGYSVDEACDGEEAENKLASKHYDLLITDLNMPKKDGLAL 905 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A P L + +T A A L KP ++ L +E++RL Sbjct: 906 AASLRRRYPGLVIWGVTASALPQSREACLASGMNMCLFKPVSVQTLSHELSRL 958 >gi|229527631|ref|ZP_04417022.1| sensor histidine kinase CqsS [Vibrio cholerae 12129(1)] gi|229333993|gb|EEN99478.1| sensor histidine kinase CqsS [Vibrio cholerae 12129(1)] Length = 662 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 544 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 603 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + K + I G+ N+PK Sbjct: 604 EATRLIRNSEHEYKNIPIIGYTG------DNSPK 631 >gi|153212464|ref|ZP_01948233.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae 1587] gi|124116501|gb|EAY35321.1| sensor histidine kinase/response regulator LuxN [Vibrio cholerae 1587] Length = 686 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 568 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 627 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + K + I G+ N+PK Sbjct: 628 EATRLIRNSEHEYKNIPIIGYTG------DNSPK 655 >gi|120437377|ref|YP_863063.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117579527|emb|CAL67996.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 813 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ ++ G+E+ + NG A D+++ F L+LTDI MP +DG +L Sbjct: 574 LIVDDEPGQLSLTMEVAKSMGFEIETAENGKEALDRLKNTEFDLVLTDIQMPILDGFQLI 633 Query: 66 R--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R + DL V+ ++G +A + N K+L KP+ +L + +LL +K Sbjct: 634 KNIRTNDDLKDLPVIALSGRTDIAKDVYRQLGFNNKLL-KPYKPTELKQNIAQLLEVK 690 >gi|83593661|ref|YP_427413.1| response regulator receiver domain-containing protein [Rhodospirillum rubrum ATCC 11170] gi|83576575|gb|ABC23126.1| Response regulator receiver domain protein (CheY) [Rhodospirillum rubrum ATCC 11170] Length = 132 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++L+ +D MR F L AG+EV NG Y+KV F LL+ DI MP+MD Sbjct: 9 VTPRVLVIDDSITMRLFYRSVLEAAGFEVEEAINGVEGYEKVLSNDFDLLIVDINMPKMD 68 Query: 61 GIELAR 66 G + R Sbjct: 69 GYSMLR 74 >gi|83593493|ref|YP_427245.1| two component, sigma54 specific, Fis family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576407|gb|ABC22958.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodospirillum rubrum ATCC 11170] Length = 511 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 48/101 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED R + L + + GA A + P SL+L DI +P+MDG+E+ Sbjct: 55 ILLVEDTPVQARTYLDYLDGGPWTIEHVETGAEALAVLERRPPSLMLLDIHLPDMDGMEI 114 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 RR L + V+ IT A+++L + L KPF Sbjct: 115 LRRVRSLPLSMGVVMITSNASISLAVAAMQAGANDFLVKPF 155 >gi|117925682|ref|YP_866299.1| response regulator receiver sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609438|gb|ABK44893.1| response regulator receiver sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 518 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED +D L ++G+E+ +G A R+ F L+L D+ MP MDG Sbjct: 393 ILVAEDAEDNALLLKHYFKESGHELTFARDGQEALTCYRQGAFDLILMDVQMPVMDGYAA 452 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R+ E L ++ +T A ++ A + LSKP R L+ E+N ++ Sbjct: 453 TRQIRCWEQEEGRATLPIVALTAHAMADAVAEAKAAGCTQFLSKPIQKRRLMEEINNIIQ 512 Query: 120 IKN 122 ++ Sbjct: 513 ARS 515 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 6/82 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62 KIL+ +D+ L+ L + + NG A V+ EP L+L DIVMPEMDG Sbjct: 6 KILVVDDERATIDHLVAIL-NGDHALCVAKNGERALALVQSEPRPDLILLDIVMPEMDGY 64 Query: 63 ELARRATELDP---DLKVMFIT 81 E+ RR + DP D+ V+F+T Sbjct: 65 EVCRR-LKADPQTCDIPVIFLT 85 >gi|117919860|ref|YP_869052.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. ANA-3] gi|117612192|gb|ABK47646.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. ANA-3] Length = 459 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L++ G + + + + + ++++D+ MP++DGI L Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKAFATTDPKGIAKLLDRDWAGVVISDVNMPQLDGISL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV--NRLLT 119 ++ + DPDL V+ +TGF +A+ ++ L KPF H+ D+V R LT Sbjct: 72 MQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSLT 131 Query: 120 IKN 122 ++N Sbjct: 132 LEN 134 >gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509] Length = 708 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 586 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 645 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 646 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 688 >gi|313683031|ref|YP_004060769.1| response regulator receiver protein [Sulfuricurvum kujiense DSM 16994] gi|313155891|gb|ADR34569.1| response regulator receiver protein [Sulfuricurvum kujiense DSM 16994] Length = 123 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 K+L+ +D MRR + L + GYE V+ +G + + E P +L+TD MPEM+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEGEDGVQGWSVLNENPDMGMLITDWNMPEMNG 61 Query: 62 IELAR--RATELDPDLKVMFIT 81 +EL + RA DL ++ +T Sbjct: 62 LELVKKVRADARFADLPIIMVT 83 >gi|240103587|ref|YP_002959896.1| Chemotaxis response regulator (cheY) [Thermococcus gammatolerans EJ3] gi|239911141|gb|ACS34032.1| Chemotaxis response regulator (cheY) [Thermococcus gammatolerans EJ3] Length = 122 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASA---YDKVREEPFSLLLTDIVMPEM 59 +IL+ +D R L K +AG+EVV + G A Y K+R + +L DI+MP+M Sbjct: 3 RILIVDDALFARILLRKIFTEAGHEVVGEASTGKEAIELYSKLRPDVITL---DIIMPDM 59 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + ++DP+ KV+ IT + + + KPF ++ EV R+L+ Sbjct: 60 DGITALQEIKKIDPNAKVIMITSVDNDKKLIECIEAGASGYIVKPFEPSQVLKEVERVLS 119 >gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 232 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 23/129 (17%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+MDG E+ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKMDGYEV 65 Query: 65 AR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R RA P ++F++ + L D ++KPF +LV VN Sbjct: 66 TRQIRAKHHMP---IIFLSAKTSDFDKVTGLVLGADD-------YMTKPFTPIELVARVN 115 Query: 116 ----RLLTI 120 R LT+ Sbjct: 116 AQLRRFLTL 124 >gi|227824850|ref|ZP_03989682.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226905349|gb|EEH91267.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 226 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 6/116 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ M + L +GY V + NGA A + ++P+ L+ DI+MP DG+ Sbjct: 3 ILLAEDEKAMSMAISAVLTHSGYTVDTVQNGAEAVEAAAQKPYDCLIFDIMMPIKDGVTA 62 Query: 65 ARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + +F+T + V + D+ A L+KPF + +L+ + + Sbjct: 63 LSEIRQSGNETPAIFLTAKSEVDDRIMGLDAGAD---DYLTKPFAMGELLARIRSM 115 >gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316] gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316] Length = 948 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 42/70 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R L L GY V + G A + + E +L++ DI+MP+MD Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMD 60 Query: 61 GIELARRATE 70 G+E+ +RA + Sbjct: 61 GLEVCKRARQ 70 >gi|168182838|ref|ZP_02617502.1| regulatory protein VanR [Clostridium botulinum Bf] gi|237794279|ref|YP_002861831.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657] gi|182674012|gb|EDT85973.1| regulatory protein VanR [Clostridium botulinum Bf] gi|229263114|gb|ACQ54147.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657] Length = 236 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD D+R L L Y ++ NG A + + E L+L D++MP MDGIE+ Sbjct: 4 ILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNALHENEIHLILLDVMMPIMDGIEV 63 Query: 65 ARR 67 A++ Sbjct: 64 AQK 66 >gi|220917728|ref|YP_002493032.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955582|gb|ACL65966.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 483 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ + R L L + GYE+ +G A + + +L D+ MP MDG Sbjct: 10 KERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 I L RRA E D + +T FA+V ++ L KP Sbjct: 70 INLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPL 113 >gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] Length = 230 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D Sbjct: 1 MSHHILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLD 60 Query: 61 GIELAR 66 G+E+ R Sbjct: 61 GLEVVR 66 >gi|149177242|ref|ZP_01855848.1| probable response regulator [Planctomyces maris DSM 8797] gi|148843956|gb|EDL58313.1| probable response regulator [Planctomyces maris DSM 8797] Length = 126 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 11/123 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +DD+ + L A+ AGYEV+ ++G K+ + L+L D+VMP G Sbjct: 6 QKRVLIIDDDEGLTEPLQMAMEAAGYEVLVAHDGNEGLMKIERDAPDLVLLDLVMPRRSG 65 Query: 62 IELARRATELDPDL-KVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + T +++ +TG + +AL+ + + + KP+H+ DLV VN Sbjct: 66 FAVLDTITNYKQRAPRIIMVTGNSEPKYRELALDRGVD-----RFIPKPYHIEDLVEAVN 120 Query: 116 RLL 118 LL Sbjct: 121 ELL 123 >gi|148976160|ref|ZP_01812903.1| sigma-54 dependent response regulator [Vibrionales bacterium SWAT-3] gi|145964555|gb|EDK29809.1| sigma-54 dependent response regulator [Vibrionales bacterium SWAT-3] Length = 351 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ M+ L KALGK +V S + A E F L++ DI +P GIE Sbjct: 24 VLVVDDEIGMQAILKKALGKYFGKVSSAGSVEEAETLRCNEHFDLIVLDINLPGRSGIEW 83 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E D V+F+TG+A + + + + + KPF+L ++ V R + Sbjct: 84 EEAFNECDRKADVIFMTGYADLEMTISALKLGASDFILKPFNLEQMIQAVLRCM 137 >gi|94264478|ref|ZP_01288266.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] gi|93455109|gb|EAT05333.1| Helix-turn-helix, Fis-type [delta proteobacterium MLMS-1] Length = 569 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 44/82 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + R L LGK G+ +S + +A + + L+L+D+VMPE+DG+EL Sbjct: 90 ILVVDDQESERYLLELRLGKLGFRALSVDGPLAALELLATTEVDLILSDMVMPELDGLEL 149 Query: 65 ARRATELDPDLKVMFITGFAAV 86 RR + + +T AV Sbjct: 150 LRRVRRHHGAIPFILVTAHGAV 171 >gi|77919010|ref|YP_356825.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545093|gb|ABA88655.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 123 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ ED++ + R L GY+V +NG +A + + E L+L DI++PE+DG Sbjct: 4 RKKILIVEDEESLLRLESILLTSKGYDVKGVSNGKAALEAMASEKPDLVLLDIMLPEIDG 63 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 E+ R + TE + V+ +T A + + +V ++KPF ++ + Sbjct: 64 FEVCRIIKVTEETCHIPVIMLT-----AKKCQDDFSRGQEVGADWYITKPFKSAMVIETI 118 Query: 115 NRLL 118 R L Sbjct: 119 QRFL 122 >gi|49082112|gb|AAT50456.1| PA0929 [synthetic construct] Length = 240 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ ++L EDD + L + L +G+EV C +G R + L+L DI++P D Sbjct: 7 LDPRLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGGYDLILMDIMLPGRD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R+ + + L V+ ++ A + L KPF L +L ++ +L Sbjct: 67 GLEILRQLRQ-EQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAIL 123 >gi|145219696|ref|YP_001130405.1| two component transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205860|gb|ABP36903.1| two component transcriptional regulator, winged helix family [Chlorobium phaeovibrioides DSM 265] Length = 241 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++I++ EDD+D+R +IK L GY++ N Y +V P+S+ + D+ +P+ DG Sbjct: 8 SKRIIIVEDDEDLRDSIIKYLRLKGYDIHGVGNALDFYAEVSTHPYSIAILDLALPDQDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +++ + ++++ +T +V L KP R+L + + Sbjct: 68 LVISQY-IRANTGMRILMLTARTSVEDRLAGYESGADVYLVKPVDFRELAASLESIF 123 >gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 228 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + RF+ L GYEV +NG + + E F +L D+++PE++GIE Sbjct: 3 RILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEINGIE 62 Query: 64 LARR 67 + RR Sbjct: 63 VCRR 66 >gi|332518960|ref|ZP_08395427.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044808|gb|EGI81001.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 1474 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60 ++ IL+AED+ +R L L K G +++ N+G +A D +E P ++L DI MP M Sbjct: 1357 DKTILIAEDNTLIRMLLDVVLKKTGAQLIFANDGKTAVDLFKENPHIDIVLLDIRMPRMS 1416 Query: 61 GIELARRATELDPDLKVMFITGFA 84 GIE +++P K++ T A Sbjct: 1417 GIEAMDLILKVNPKAKIIMQTAHA 1440 >gi|320160493|ref|YP_004173717.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994346|dbj|BAJ63117.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 363 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ +R ++ L GYE ++G A + + P L+L D+ MP +DG Sbjct: 3 RILVVEDEEMVRANIVDLLEAEGYETQEASDGEQALQLIWQNPPDLILCDVRMPRVDGFT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R ++ +P L+ + A D N ++KPF +DL+ V R L Sbjct: 63 FLARISQ-EPRLRAIPFIFLTARVEREDQRLGMNLGADDYITKPFTRKDLLTAVQRRL 119 >gi|315650386|ref|ZP_07903457.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315487313|gb|EFU77624.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 295 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 + KILL +D++++R+ +IK + + G+ VV NG A +K+ L+ TDI MP Sbjct: 4 HYKILLVDDEEEVRKSIIKKINWEEEGFLVVGDAENGVEALEKIENLNPDLVFTDIRMPY 63 Query: 59 MDGIELARRATELDPDLKVMFITGF 83 MDG+EL + P +K + +GF Sbjct: 64 MDGLELIKEINNRYPLIKSIIFSGF 88 >gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1139 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED + L KAG++V NG A + E F L+L DI MPEMDG+E Sbjct: 896 ILLAEDSPANQIIAGTMLTKAGFDVTYACNGVEAVKLMNERAFDLVLMDIRMPEMDGLEA 955 Query: 65 ARRATELDPDLKVMFITG 82 + +P+ ++ +T Sbjct: 956 SHIILSTNPNQIILAMTA 973 >gi|218886456|ref|YP_002435777.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757410|gb|ACL08309.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 525 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCN--NGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +L+ +D+ D R L + + EVV +GA A + +R + +LLTD+ MP M G+ Sbjct: 7 VLIVDDEPDFARGLSRLAAELFPEVVVSQAFSGAEALNCLRAQRMDVLLTDLRMPGMTGL 66 Query: 63 ELARRATELDPDLKVMFITG-----------------FAAVALNPDSNAPKNAKVLSKPF 105 +L A E DPDL V+ +T F A + PD + A+VL K Sbjct: 67 QLVTMALEQDPDLSVVVLTAHGSIETAVEALRAGAYDFVAKPVEPD----QLARVLGKGL 122 Query: 106 HLRDLVNEVNRL 117 L+ E RL Sbjct: 123 ERSRLLAENRRL 134 >gi|149927471|ref|ZP_01915725.1| chemotaxis protein CheY [Limnobacter sp. MED105] gi|149823744|gb|EDM82970.1| chemotaxis protein CheY [Limnobacter sp. MED105] Length = 121 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +L+ +D +R+ + L G+EV+ +G A K+ L+++D+ MP MD Sbjct: 1 MSKTVLVVDDSTSLRQVVGMTLKSQGFEVIEGCDGKDALTKLDGRKVHLIVSDLNMPNMD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ R ++ PD K ++ +T L A + KPF ++ VN+L Sbjct: 61 GLSFVREVKKM-PDYKFVPIIMLTTETDDTLKAQGQAAGLKAWMVKPFKPEQMLAAVNKL 119 Query: 118 L 118 + Sbjct: 120 V 120 >gi|116253196|ref|YP_769034.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257844|emb|CAK08942.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 233 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD +R L + L + G+ V +GA A K+ F L++ D++MP GIE+ Sbjct: 14 LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGIEV 73 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA + ++ ++ +T A + LSKPF R+LV +N +L Sbjct: 74 TRGLRAIK---NVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNIL 126 >gi|332305204|ref|YP_004433055.1| response regulator receiver and Hpt phospho transfer protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172533|gb|AEE21787.1| response regulator receiver and Hpt phospho transfer protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 374 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 55/118 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED + LG G E +NGA A +++ + L+L D MP MDG Sbjct: 80 ILVAEDSLTNQEVAKSMLGLLGCEAWLADNGAEAVEQINLQRPELVLMDCQMPVMDGYAA 139 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R + PDL ++ +T L +V+SKPF L++L + R L + N Sbjct: 140 TRAIRKNWPDLPIVALTAGMGDNLRQQCLDAGMNEVMSKPFSLQELEQTLLRFLPVPN 197 >gi|330876740|gb|EGH10889.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 273 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV+ ++G A +++ + F L+L D MP MDG E Sbjct: 151 RVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGYE 210 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R R++ P+L ++ +T A A L+KPF +L +++ + I Sbjct: 211 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWIPIA 270 Query: 122 N 122 + Sbjct: 271 D 271 >gi|323494481|ref|ZP_08099586.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio brasiliensis LMG 20546] gi|323311208|gb|EGA64367.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio brasiliensis LMG 20546] Length = 1240 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+AED+ + + K L + G V ++G +AY + E P LL+TD MP MDG Sbjct: 1008 VLVAEDNPINQLVIRKQLEQLGLTVNMVDDGEAAYHAIMEHPDGIDLLITDCHMPNMDGF 1067 Query: 63 ELA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 EL+ R LD L ++ T + + SN +L KP+ + L N Sbjct: 1068 ELSSKIRNEANLDKHLTIIGCTAEDSSIVRSKSNESGFDHILFKPYGIEKLRN 1120 >gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 231 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDDD +R L +L + G+ V + G K+REE L++ D+++P +DG E+ Sbjct: 10 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEV 69 Query: 65 ARRATELDPDLKVMFIT 81 RR D L ++ +T Sbjct: 70 CRRIRRTD-QLPIILLT 85 >gi|302343346|ref|YP_003807875.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301639959|gb|ADK85281.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfarculus baarsii DSM 2075] Length = 449 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ + L L GY+V + +NG +A E+ L++TD+ MP M GIE Sbjct: 3 RILVVDDEKNYLVVLEALLRGEGYDVRTADNGQAALRLADEDEPDLVITDMKMPRMSGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + PDL V+ +T + V ++ + KPF R+L+ + L ++ Sbjct: 63 LIQALRVDHPDLPVIVMTAYGTVENAVEAMKLGATDYIIKPFENRELLLTTEKTLRMR 120 >gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI] gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 209 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E+V NG A VR E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE ++ + D +K++ ++ F+ Sbjct: 61 MDGIEATKQIKQYDETIKILILSSFS 86 >gi|299140399|ref|ZP_07033558.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX8] gi|298597626|gb|EFI53805.1| response regulator receiver protein [Acidobacterium sp. MP5ACTX8] Length = 123 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE----PFSLLLTDIVM 56 M ILL +D+ L +AGY V++ N A ++ R E P L+LTD +M Sbjct: 1 MPATILLIDDNAVQAATRQTILKRAGYFVIAVLNPERALEQFRSEEFPSPIDLILTDHIM 60 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P M+G E R+ E P + V+ I+G + A KP +L+ V+R Sbjct: 61 PCMNGNEFVRKLREFQPKIPVLVISGMVEAE---EEYAGLGIHFRLKPLLPDNLLASVHR 117 Query: 117 LLT 119 L+T Sbjct: 118 LVT 120 >gi|295132625|ref|YP_003583301.1| histidine kinase [Zunongwangia profunda SM-A87] gi|294980640|gb|ADF51105.1| histidine kinase [Zunongwangia profunda SM-A87] Length = 1356 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 17/126 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD ++R ++ L K Y + + ++ +A+ +V + P L+++D+VMPEMDGI Sbjct: 1105 IFIVDDDAEIRNYIASEL-KISYNIKTFSSAKTAFPEVAKNPPDLIISDVVMPEMDGISF 1163 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL--------SKPFHLRDLVNEVNR 116 R+ K ++I + L ++ N + L +KPF++ L V Sbjct: 1164 TRKIK------KNIYINHVPVILLTGKTDRETNIEGLEIGVDAYINKPFNIEILRKTVRN 1217 Query: 117 LLTIKN 122 L IKN Sbjct: 1218 L--IKN 1221 >gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment'] Length = 683 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ R ++ L KAG+ V G + E F L++ D+ MPEMDGI Sbjct: 379 RILLAEDNPVNRILAVRLLEKAGHTVAVAGTGREVLVTLEREQFDLVMMDVQMPEMDGIS 438 Query: 64 LARRATELDPDLKVMF-ITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 E + I A A+N D A LSKP + L + RL Sbjct: 439 ATAAIRERERGSGAHLPILALTAHAMNGDRERCLAAGMDDYLSKPIQAKALYEAIARL 496 >gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 325 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 ++L+ +D+ + L AL G+EV + G +A + E +P +++L DI++P+MDG+ Sbjct: 84 RVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVL-DIMLPDMDGL 142 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + PD+ V+F+T AV ++KPF + +L + L+ Sbjct: 143 AVLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLM 198 >gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 243 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+++LL EDDD + L L AGY + ++G A + + + ++L D+++P D Sbjct: 1 MNEQLLLVEDDDAIAAALRLHLEAAGYRLHRESDGLQAMAAIDRQRWDMVLLDLMLPGAD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++ R D+ V+ ++ +A A L+KPF + +LV V LL Sbjct: 61 GWDVCRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVARVRALL 118 >gi|238577809|gb|ACR46720.1| two-component sensor histidine kinase [Pseudomonas syringae pv. tabaci] Length = 839 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 716 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPGINGTDL 775 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 776 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 816 >gi|221209343|ref|ZP_03582324.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD1] gi|221170031|gb|EEE02497.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD1] Length = 259 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD + + + G+E V +G A ++R EPF L++ D ++P M G E Sbjct: 2 RVLIVEDDPVHAQAAARVVASLGHEAVVAGDGEHAQQRLRAEPFDLVILDWLLPRMSGFE 61 Query: 64 L---ARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR P V+F+T A + L D+ A + KPF + + + V+ L Sbjct: 62 VLYWIRRTLGTTP--AVLFVTSKALDDDIVLAMDAGA---DDYIVKPFRVAEFASRVSAL 116 Query: 118 L 118 L Sbjct: 117 L 117 >gi|209809112|ref|YP_002264650.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010674|emb|CAQ81061.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 755 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + + L AGY + NNG A V + + L+ DI MPEMDG+ Sbjct: 495 RLLVVEDNLANQIVIKNTLSYAGYTIDIANNGKEAISMVTDTDYDLIFMDISMPEMDGMT 554 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 ++ L + M I A AL+ D +A + LSKPF+ L+ + L++ Sbjct: 555 ATKKIRTLSKHHEKMPIIALTAHALSGDKERFIDAGMTDYLSKPFNRTALLECLATYLSV 614 >gi|170748526|ref|YP_001754786.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655048|gb|ACB24103.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1014 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 8/112 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 Q++L+ ED+ + +F + L GY+ N A D++ F L+ +D+VMP M Sbjct: 887 QRVLVVEDNVGVGQFATQILEDLGYQPTWAANAEEALDELGRAGNRFDLIFSDVVMPGMG 946 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDS------NAPKNAKVLSKPFH 106 G+ LA+ P + V+ +G++ V D+ + P +A+ LS+ H Sbjct: 947 GVALAQELRRRAPQVPVVLTSGYSHVLAQSDAHDFTLLHKPYSAEQLSRILH 998 >gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++ L + L + GYEV +NG + + +E + LL+ D ++P+ G++ Sbjct: 2 KILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 + + V+F+T + D A +A L KPF LR+L+ V LL Sbjct: 62 ICQYLRNQGDTTPVLFLTAKDTI---DDRVAGLDAGADDYLVKPFQLRELLARVRALL 116 >gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Citrobacter koseri ATCC BAA-895] gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895] Length = 948 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 229 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ + +L K LG+ G+ V + +NG E+P+ L++ D ++P +DG+ Sbjct: 2 KLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGLA 61 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + A R + P V+ +T A V L KPF +LV ++ LL Sbjct: 62 VLAALRQSRQTP---VLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALL 115 >gi|71733880|ref|YP_273523.1| two-component sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554433|gb|AAZ33644.1| two-component sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 839 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 716 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPGINGTDL 775 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 776 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 816 >gi|46578954|ref|YP_009762.1| sigma-54 dependent DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448367|gb|AAS95021.1| sigma-54 dependent DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311232811|gb|ADP85665.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris RCH1] Length = 467 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 ++ IL+ +D+ D L + + + V +GA A ++ +LLLTD+ MP+M Sbjct: 6 DEHILIVDDEPDFAHGLARLVSRDFPAASVSVALSGAEALHIIQGSGVALLLTDLRMPDM 65 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+EL ++A +DP V+ +T ++ + L+KP +L +N+ L Sbjct: 66 DGMELMQQAMTVDPTTSVILLTAHGSIETAVAALKNGAYDFLTKPVRREELQRTLNKAL 124 >gi|84685343|ref|ZP_01013241.1| DNA-binding response regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666500|gb|EAQ12972.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 203 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKA-GYEVVSCNN--GASAYDKVREEPFSLLLTDIVMPEMD 60 +IL+A+D D +R L+ L A G+E + + GA A + + EPF L+L D+ MP M+ Sbjct: 2 RILIADDHDLLRDTLVAFLEAASGFETETAADYDGAIALME-QSEPFDLVLLDLNMPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GI+ RA ++ D +V ITG A + + A L K + LVN V Sbjct: 61 GIDGLERAMKIGGDQRVALITGTATREIAQQALDLGAAGFLPKTLSAKSLVNAV 114 >gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] Length = 1318 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q ILL ED++ + I L V++ +NG A + + + P L+L D+ MP +DG+ Sbjct: 991 QTILLVEDNEVNQEVAIGLLKGTNVNVLTADNGQQAINMLEQHPVDLVLMDMQMPVLDGV 1050 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 A +PD + + I A A+ D + A + L+KP ++R+L +++ L Sbjct: 1051 S-ATEQIRRNPDWQQLPIIAMTANAMQSDVDRCIAAGMNSHLAKPINVRNLYQTLSQHL 1108 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ L+ +D+D R L+ L ++ + +NG A D++R F LL D MP ++GI Sbjct: 852 KRALVVDDNDSARNILVTLLNAMHFDAKAVSNGFEALDEIRNSQFDLLFVDWNMPGLNGI 911 Query: 63 ELARRA 68 EL + A Sbjct: 912 ELLQTA 917 >gi|319780215|ref|YP_004139691.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166103|gb|ADV09641.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +GASA + + P +L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLAARPPNLAILDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRMRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FIRKPFSQRLLVERVRAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family [Halomonas elongata DSM 2581] Length = 254 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 10/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY----DKVREEPFSLLLTDIVM 56 M +IL ED+ ++ R L++ L G+ ++G SA + L++ D+++ Sbjct: 12 MTYRILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLML 71 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNE 113 P +DG+E+ RR D V+ +T AA V L + A ++KPFH+ L+ Sbjct: 72 PGLDGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGAD---DYVTKPFHMSILLAR 128 Query: 114 VNRLL 118 V LL Sbjct: 129 VQALL 133 >gi|304398245|ref|ZP_07380119.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304354111|gb|EFM18484.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 223 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED ++ R+L KAL + G+ V +G +A ++ E ++L++ D+ +P +DG+E Sbjct: 2 RLLLVEDTVELARWLQKALTQKGFAVDWVADGVAADHALQCEAYALVVLDVSLPRIDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T +A+ LN ++ L+KPF L +L + LL Sbjct: 62 VLTRLRRRGQGVPVLLLTARSALDDRVRGLNLGAD-----DYLTKPFELDELEARLRALL 116 >gi|303239853|ref|ZP_07326376.1| response regulator receiver protein [Acetivibrio cellulolyticus CD2] gi|302592563|gb|EFL62288.1| response regulator receiver protein [Acetivibrio cellulolyticus CD2] Length = 117 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+A+D MR L L + G+EVV NG A +K +E ++ DI MP DG Sbjct: 2 KRVLVADDATFMRTSLRMMLERNGFEVVGEAENGLVAVNKYKEINPDIVTMDITMPICDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 I+ + E DP+ K++ I+ ++ + KPF +V +++L Sbjct: 62 IKAVQMIKEFDPNAKIVMISSMGQECFVKEAIISGAKGFIVKPFKEEYVVETLSKL 117 >gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM B1551] gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM B1551] Length = 238 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++LL +D+D +RR L L K GY + +G A +K + L++ D++MP +DGI Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 E+ ++ E +M A + N + +V + KPF R++V V L Sbjct: 65 EVCKQIREKKATPIIML------TAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAL 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|293376778|ref|ZP_06623000.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292644644|gb|EFF62732.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 224 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD R+ L L + GY V + +G + + + L++ DI+MP+MDG E+ Sbjct: 4 ILVAEDDKHARKLLETLLKREGYTVFTAEDGEKVLEILSIQHIDLIILDIMMPKMDGFEV 63 Query: 65 ARRATELDPDLKVMFITG 82 AR E + + ++ T Sbjct: 64 ARLLREANFTMPILMATA 81 >gi|288933494|ref|YP_003437553.1| Hpt sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288888223|gb|ADC56541.1| Hpt sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 1080 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 53/113 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY V +G A +K+ + + LL+TD+ MP DG+ L Sbjct: 846 ILIADDHPTNRLLLKRQLSTIGYSVDEACDGEEAENKLASKHYDLLITDLNMPRKDGLAL 905 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A P L + +T A A L KP ++ L +E++RL Sbjct: 906 AASLRRRYPGLVIWGVTASALPQSREACLASGMNMCLFKPVSVQTLSHELSRL 958 >gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 239 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + R + L +AGYEV + G +A R +++ D+ +P +DGIE Sbjct: 17 RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 76 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+ +T + A ++KPF +R+LV V ++ Sbjct: 77 VCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVM 130 >gi|224370301|ref|YP_002604465.1| diguanylate cyclase (GGDEF) domain protein [Desulfobacterium autotrophicum HRM2] gi|223693018|gb|ACN16301.1| diguanylate cyclase (GGDEF) domain protein [Desulfobacterium autotrophicum HRM2] Length = 576 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +DD MR ++ AL K G +V+ +NG+ E +++ D+VMP MDG E Sbjct: 13 LVVDDDPFMRMVIVAALKKIGLDVIDTDNGSDGITLFNSERPDIIMMDVVMPGMDGFEAC 72 Query: 66 RRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + P ++++ +TG V + ++KPF+L L +V L Sbjct: 73 ERIRK-SPGGDLVQILMVTGLEDVESAKKAFKIGADGFITKPFNLPILSQQVQYTL 127 >gi|238485454|ref|XP_002373965.1| sensory transduction histidine kinase, putative [Aspergillus flavus NRRL3357] gi|220698844|gb|EED55183.1| sensory transduction histidine kinase, putative [Aspergillus flavus NRRL3357] Length = 534 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%) Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIV 55 +NQK +L+ +D+D + L + K G + NG +A +K +E F +L DI Sbjct: 408 LNQKNIHVLIVDDNDVNLKILATFMRKIGCRYETATNGLAALEKYKECAGQFDYVLMDIS 467 Query: 56 MPEMDGIELARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 MP MDGI + + E + P +M +TG A+ ++ + A L KP L DL Sbjct: 468 MPIMDGIVSSSKIREYEEQNSLPRSTIMAVTGVASSSMQQQAFAAGIDDYLVKPLSLHDL 527 Query: 111 VNEVN 115 +N Sbjct: 528 KRIMN 532 >gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99] Length = 236 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + KAG++VV+ +G S Y+ E L++ D+++PEMDGIE Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + ++ ++ +T + L D ++KPF R++V + Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADD-------YMTKPFSPREVVARIKA 115 Query: 117 LL 118 +L Sbjct: 116 IL 117 >gi|170769590|ref|ZP_02904043.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia albertii TW07627] gi|170121647|gb|EDS90578.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Escherichia albertii TW07627] Length = 452 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 56/112 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I+ ED DD+R + L AGY V+SC + + ++ ++LTD+ +P + G+EL Sbjct: 10 IIYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSLPLIQSLQNIIVLTDVRLPGISGLEL 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +E+D + V+ ITG V + ++ + KP L++ + R Sbjct: 70 LNYISEMDNKIPVILITGHCDVEMAVEAMRNGAFDFIEKPSSSDKLLSIIAR 121 >gi|153870034|ref|ZP_01999517.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp. PS] gi|152073497|gb|EDN70480.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp. PS] Length = 448 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +D+ D+R + + L G+ V +G +A + E+ L+L DI MP++D Sbjct: 1 MSAHILVVDDEPDIRSLMKEILEDEGFTVSVAQDGKTARELRSEKHPDLILLDIWMPDID 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI L + R + + D +V+ I+G V ++ + KP + L+ + R L Sbjct: 61 GISLLKEWRESGMTLDSQVIMISGHGTVETAVEATRLGAYDFIEKPVSIAKLLLTIKRAL 120 Query: 119 TI 120 + Sbjct: 121 EM 122 >gi|149920888|ref|ZP_01909350.1| response regulator receiver domain protein (CheY-like) [Plesiocystis pacifica SIR-1] gi|149818287|gb|EDM77740.1| response regulator receiver domain protein (CheY-like) [Plesiocystis pacifica SIR-1] Length = 239 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+DD+ +++ L G V +G A + E + L++TD+ MP ++GIE Sbjct: 7 SVLVIDDNDDLTENIVEILDDLGVYVRVAGSGEEALEIFDERRWDLVVTDVRMPGINGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L + E P V+ +TG+A ++ V+ KP L + + R+ Sbjct: 67 LLAQLKERSPGTPVLVMTGYADRDTRAAAHRSGALAVVHKPLDLEAFIELIERV 120 >gi|119509383|ref|ZP_01628532.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119465997|gb|EAW46885.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 277 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD R +K L G++ +S NG + + +E L++ DI MP++DG Sbjct: 7 KKILVIEDDTVTRNLYVKGLQAKGFDTISAENGLAGIQQAQEHLPDLVVCDITMPDIDGY 66 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + + +FITG ++KPF L +L+ ++ L Sbjct: 67 SVLTMLRQDPVTAIIPFIFITGSCTRGCVRKGMELGADDYVTKPFTLDELLRAISTQL 124 >gi|148654863|ref|YP_001275068.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] gi|148566973|gb|ABQ89118.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] Length = 331 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+A+D+ MR +I+ + GY ++ NG A E+ L+L D+ MP++D Sbjct: 1 MAAKILIADDNQAMREAIIRFVEAEGYTALAARNGREALALALEKQPDLVLLDVTMPDID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSN----APKNAKVLSKPFHLRDLVNEVNR 116 G E+ RR DP ++ IT V +PD L+KPF R L + Sbjct: 61 GFEVCRRLKN-DPRTALIPIT-MLTVLDSPDHRRYGIEAGADDFLTKPFDERLLRARIQS 118 Query: 117 LLTIKN 122 L K Sbjct: 119 QLRTKR 124 >gi|2598025|emb|CAA03999.1| styrene response regulator [Pseudomonas sp. Y2] Length = 207 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 57/116 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L L AG+EV + + ++ + R E L+ D+ MP M GIEL Sbjct: 7 VFVVDDDLSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIEL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + T + + ++FIT + + + + L KPF + L++ + + L + Sbjct: 67 QEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 >gi|24374083|ref|NP_718126.1| response regulator [Shewanella oneidensis MR-1] gi|24348564|gb|AAN55570.1|AE015695_12 response regulator [Shewanella oneidensis MR-1] Length = 192 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ MR L +AL + +++ +G A KV E L+L D+ +P +DG Sbjct: 75 KSILIIDDELSMRNALRRALQSTPFTILTAQDGFQAGVKVIAEKPDLILLDLSLPGLDGF 134 Query: 63 ELARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ + + PDL K++ ++G +++ L +S ++KPF DL++ VN LL+ Sbjct: 135 EVIQFIRQ-RPDLAKLKILVLSGLSSIEL-AESIRLGADDAIAKPFDNHDLLDRVNMLLS 192 >gi|88799455|ref|ZP_01115032.1| nitrogen regulation protein NR(I) [Reinekea sp. MED297] gi|88777765|gb|EAR08963.1| nitrogen regulation protein NR(I) [Reinekea sp. MED297] Length = 474 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 59/117 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ I + +DD +R L +AL K GY +G S K+ + ++++D+ M MDG Sbjct: 4 SKDIWVVDDDRSIRWVLDRALSKQGYHCTVYESGESLLRKLSHQTPDVIISDVRMDGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL +R P++ V+ +T + + S + L KPF + + + V+R L Sbjct: 64 LELLQRIQTEHPEIPVIIMTAHSDLDSAVASFQGGAFEYLPKPFDVDEALALVDRAL 120 >gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 642 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED++ + L K + K GY + NG A + + P+ ++ DI MP MDG+E Sbjct: 517 KILIAEDNEVNQLVLKKMIEKLGYNSTTVLNGLEAVEAFKRYPYDMVFMDIQMPFMDGME 576 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLTI 120 + E P +I A A+ D + +SKP L + +++ L Sbjct: 577 AVQLIKESAPPDHQPYIVAVTAHAIKGDREKYLGMGMDEYVSKPVSLNVISAIIDQFLAE 636 Query: 121 KN 122 +N Sbjct: 637 RN 638 >gi|313683017|ref|YP_004060755.1| response regulator receiver protein [Sulfuricurvum kujiense DSM 16994] gi|313155877|gb|ADR34555.1| response regulator receiver protein [Sulfuricurvum kujiense DSM 16994] Length = 124 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61 K+L+ +D MRR + L + GYE V+ +G + + E P +L+TD MPEM+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEGEDGVQGWSVLNENPDMGMLITDWNMPEMNG 61 Query: 62 IELAR--RATELDPDLKVMFIT 81 +EL + RA DL ++ +T Sbjct: 62 LELVKKVRADARFADLPIIMVT 83 >gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 235 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R L +L AG+EVV+ NG A V + L + D+++P+MDG Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGFT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ V+F+T + ++KPF L ++V + +L Sbjct: 69 ITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVL 123 >gi|284054063|ref|ZP_06384273.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 232 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 8/107 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ R L + L K GY+V+ +NG A +R P L+L DI+MP+M+G ++ Sbjct: 8 VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPLDLVLLDIMMPQMNGYQV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFH 106 L DL++ I A+N + + ++ LSKPF+ Sbjct: 68 LE---SLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFN 111 >gi|238894401|ref|YP_002919135.1| hypothetical protein KP1_2384 [Klebsiella pneumoniae NTUH-K2044] gi|238546717|dbj|BAH63068.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 404 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+ ED RR L + L + GY V NG A + +P SL+++D MPEM+G+ Sbjct: 4 QHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVDALAILENQPVSLVISDWEMPEMNGL 63 Query: 63 ELAR 66 L R Sbjct: 64 TLCR 67 >gi|218246197|ref|YP_002371568.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218166675|gb|ACK65412.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 715 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D D R L L GY+V SC G A + L+L DI +P+ DG E+ Sbjct: 9 LLIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVTDLILLDIKLPDYDGYEI 68 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR A E + V+F++ A ++KPF + +++ V L+I+ Sbjct: 69 CRRLKADEQTAHIPVIFLSALNETFDKVQGFTVGGADYITKPFQIEEVLARVATHLSIQ 127 >gi|254461692|ref|ZP_05075108.1| aerobic respiration control sensor protein ArcB, putative [Rhodobacterales bacterium HTCC2083] gi|206678281|gb|EDZ42768.1| aerobic respiration control sensor protein ArcB, putative [Rhodobacteraceae bacterium HTCC2083] Length = 577 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +LLAED+ + + + L + V NG A DK + F ++L DI MPEMDG Sbjct: 324 GKHVLLAEDNVINQMLITRYLTRLNMSVELAENGRIALDKFNPDTFDVVLIDIAMPEMDG 383 Query: 62 IELARRATE------LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 +E +R E + P ++ +T A+ D + +VL+KP + E+N Sbjct: 384 LEATKRFREKWVNHTIPP---IVALTAHVLDAIEEDVSIVGFDRVLTKPILFEEFETELN 440 Query: 116 RLLT 119 +L+ Sbjct: 441 SILS 444 >gi|206580762|ref|YP_002236509.1| putative sensor protein EvgS [Klebsiella pneumoniae 342] gi|206569820|gb|ACI11596.1| putative sensor protein EvgS [Klebsiella pneumoniae 342] Length = 1080 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 53/113 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY V +G A +K+ + + LL+TD+ MP DG+ L Sbjct: 846 ILIADDHPTNRLLLKRQLSTIGYSVDEACDGEEAENKLASKHYDLLITDLNMPRKDGLAL 905 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A P L + +T A A L KP ++ L +E++RL Sbjct: 906 AASLRRRYPGLVIWGVTASALPQSREACLASGMNMCLFKPVSVQTLSHELSRL 958 >gi|193216009|ref|YP_001997208.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089486|gb|ACF14761.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1544 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 IL+ +D+ ++R K L GY ++G+ A E E + ++ D++MP MDG Sbjct: 1425 ILVVDDEKEIRDVTAKILSANGYTPFCASDGSQAVAIYVEHKESINAVILDMMMPVMDGF 1484 Query: 63 ELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAK-VLSKPFHLRDLV 111 R +DP++K++ ++G +++ S+ N K +L+KP++ +L+ Sbjct: 1485 ATIRALKNIDPNVKILCVSGLVDKESISKHSDIDDNVKAILTKPYNAENLL 1535 >gi|167031315|ref|YP_001666546.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166857803|gb|ABY96210.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 240 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ +DDD++R L L AGY V++ +G +++ + L++ D+++P D Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGED 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L Sbjct: 61 GLSLCRQ-LQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 >gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 239 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ M F+ L G VVS +NG A +KVR+E ++L DI+MP MDG E Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + + V+ +T + L D + KPF R+LV+ + + Sbjct: 69 LRRLRQAS-SVPVLVLTAKDDEEDRIKGLELGADD-------YIGKPFSHRELVSRIRAV 120 Query: 118 L 118 L Sbjct: 121 L 121 >gi|116666739|pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 700-949) Containing Linker Region And Phosphoreceiver Domain Length = 254 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 191 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 192 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 234 >gi|58039984|ref|YP_191948.1| chemotaxis protein CheY [Gluconobacter oxydans 621H] gi|58002398|gb|AAW61292.1| Chemotaxis protein CheY [Gluconobacter oxydans 621H] Length = 119 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D MR + + L K GYEV + +G A +K+ + ++++TD+ MP MDG++L Sbjct: 3 ILVVDDSRTMRDLVSRELRKDGYEVETSEDGVEALEKISDFLPAVIITDLNMPRMDGLQL 62 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R RA + ++F+T + L + + KPF L+ V R+ Sbjct: 63 TRALRARSDTKYVPIIFLTTESGDDLRRAAREAGATGWIVKPFDGPRLLAAVRRV 117 >gi|23501491|ref|NP_697618.1| DNA-binding response regulator [Brucella suis 1330] gi|161618578|ref|YP_001592465.1| two component transcriptional regulator [Brucella canis ATCC 23365] gi|254703943|ref|ZP_05165771.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|260566808|ref|ZP_05837278.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str. 40] gi|261754595|ref|ZP_05998304.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|23347396|gb|AAN29533.1| DNA-binding response regulator [Brucella suis 1330] gi|161335389|gb|ABX61694.1| two component transcriptional regulator, winged helix family [Brucella canis ATCC 23365] gi|260156326|gb|EEW91406.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str. 40] gi|261744348|gb|EEY32274.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 229 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L +A+ AGY V S +G + E + ++ DI +P+MDGI Sbjct: 2 RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGIS 61 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T ++ D+ A ++KPFH+ +++ + L+ Sbjct: 62 VVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGAD---DYVAKPFHIEEVLARLRALI 116 >gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51] gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 41/63 (65%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD+ +R + L GY++ +NG SA +KVR++ F L++ D++MP +DG Sbjct: 2 KILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGWT 61 Query: 64 LAR 66 + + Sbjct: 62 VCK 64 >gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMDG E Sbjct: 3 RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R + D D+ ++ +T L KPF +LV V LL Sbjct: 63 LCRELRDYD-DVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALL 116 >gi|13474249|ref|NP_105817.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|260463214|ref|ZP_05811416.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|14025001|dbj|BAB51603.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|259031064|gb|EEW32338.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 233 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY V + +GASA + + P +L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLAARPPNLAILDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + DL V+F+T + + D + KPF R LV V + Sbjct: 64 LRRMRQ-KSDLPVIFLTSKDDEIDELFGLKMGADD-------FIRKPFSQRLLVERVRAV 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 230 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD D+ A+ KAG+E ++G +A R + L++ DI +PE D Sbjct: 1 MSARILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAIAAQRRDAPDLVVLDIGLPEKD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ R + D+ ++F+T + L D L+KPF R+LV Sbjct: 61 GLEVCRDIRK-SSDVPILFLTARDEEIDRIVGLELGADDY-------LTKPFSPRELVAR 112 Query: 114 VNRLL 118 + +L Sbjct: 113 IKAIL 117 >gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L] gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Ames] gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. 'Ames Ancestor'] gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Sterne] gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L] gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] Length = 209 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E+V NG A VR E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE ++ + D +K++ ++ F+ Sbjct: 61 MDGIEATKQIKQYDETIKILILSSFS 86 >gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 225 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL EDDD +R L +L + G+ V + G K+REE L++ D+++P +DG E+ Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEV 63 Query: 65 ARRATELDPDLKVMFIT 81 RR D L ++ +T Sbjct: 64 CRRIRRTD-QLPIILLT 79 >gi|302188712|ref|ZP_07265385.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae 642] Length = 783 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV+ ++G A +++ + F L+L D MP MDG E Sbjct: 661 RVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGYE 720 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R R++ P+L ++ +T A A L+KPF +L++ +++ + I Sbjct: 721 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELISILDQWIPI 779 >gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 948 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|291539744|emb|CBL12855.1| Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Roseburia intestinalis XB6B4] Length = 551 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIK--ALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KI LAED+ MR + A + G+E V +G AY +++ +L+TDI MP MD Sbjct: 10 KIFLAEDEIVMREGIRNNIAWQEEGFEFVGEAGDGELAYPMIQKLKPDILITDIRMPFMD 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+EL+R + PD ++ ++G+ ++ + L KP L+ + R+ Sbjct: 70 GLELSRIVKQELPDTSILILSGYGEFDYAKEAISIGVEDYLLKPVTSAQLLEAIRRI 126 >gi|290511446|ref|ZP_06550815.1| two-component system, NarL family, sensor histidine kinase EvgS [Klebsiella sp. 1_1_55] gi|289776439|gb|EFD84438.1| two-component system, NarL family, sensor histidine kinase EvgS [Klebsiella sp. 1_1_55] Length = 1080 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 53/113 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY V +G A +K+ + + LL+TD+ MP DG+ L Sbjct: 846 ILIADDHPTNRLLLKRQLSTIGYSVDEACDGEEAENKLASKHYDLLITDLNMPRKDGLAL 905 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 A P L + +T A A L KP ++ L +E++RL Sbjct: 906 AASLRRRYPGLVIWGVTASALPQSREACLASGMNMCLFKPVSVQTLSHELSRL 958 >gi|269961096|ref|ZP_06175464.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834047|gb|EEZ88138.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 681 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++ +D++ +R+F L K G++V+ +G A + + L+L DI MP MDG+ Sbjct: 563 RTIMVVDDNESLRKFTAMLLEKQGFDVIQKEDGQQAINALDANDVDLILMDIEMPVMDGV 622 Query: 63 ELARR 67 E +RR Sbjct: 623 EASRR 627 >gi|262191177|ref|ZP_06049378.1| sensor histidine kinase CqsS [Vibrio cholerae CT 5369-93] gi|262032952|gb|EEY51489.1| sensor histidine kinase CqsS [Vibrio cholerae CT 5369-93] Length = 660 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G+ + + L+L DI MP + G+ Sbjct: 542 RRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGL 601 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E R + + K + I G+ N+PK Sbjct: 602 EATRLIRNSEHEYKNIPIIGYTG------DNSPK 629 >gi|256421879|ref|YP_003122532.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256036787|gb|ACU60331.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1342 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD ++ FL + GY V+ NG +A + L+++DI+M EMDGIEL Sbjct: 1079 ILVVEDDMAIQTFLAASFRDTGYSVLKAANGKAAMALIEAHAIDLVISDIMMAEMDGIEL 1138 Query: 65 ARR 67 ++ Sbjct: 1139 CQQ 1141 >gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++I++ ED+D++R + L + GYEV + NG ++ ++ L++ D++MP+ D Sbjct: 1 MKKRIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G EL + ++ ++ +T + + D ++KPF R+LV Sbjct: 61 GWELCEEIRQYS-NVPIIMLTARGEERDRILGLTMGADD-------YVTKPFSPRELVLR 112 Query: 114 VNRLL 118 V +L Sbjct: 113 VQIIL 117 >gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 209 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E+V NG A VR E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE ++ + D +K++ ++ F+ Sbjct: 61 MDGIEATKQIKQYDETIKILILSSFS 86 >gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1055 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL EDD R + K L KAG+EV+ NG A++ + +L DI MP MDGIE Sbjct: 931 HVLLVEDDPSNRLPIQKLLEKAGHEVLLAENGRQAFELLAASDIDCILMDIQMPVMDGIE 990 Query: 64 ---LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + L P D+ ++ +T +A A +KP + +L+ +++ +L Sbjct: 991 ATRIIRESAALGPKKDVPIIALTAYAMDGDKEKFLAAGMNGYAAKPVTIENLLQKMDEVL 1050 >gi|213025912|ref|ZP_03340359.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 252 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 131 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 190 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 191 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 233 >gi|254459222|ref|ZP_05072644.1| ggdef family protein [Campylobacterales bacterium GD 1] gi|207084115|gb|EDZ61405.1| ggdef family protein [Campylobacterales bacterium GD 1] Length = 572 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 46/78 (58%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL ED++D R+F ++ L + ++ +G K +E F +++TDI MP+M+G+E+ Sbjct: 17 ILYVEDNEDARQFTMEMLKRFFKSIIVAVDGKDGLAKFKENNFDMIITDINMPKMNGLEM 76 Query: 65 ARRATELDPDLKVMFITG 82 A+ ++ + ++ ++ Sbjct: 77 AKEIKSINKSIPILILSA 94 >gi|197122936|ref|YP_002134887.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196172785|gb|ACG73758.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 483 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ + R L L + GYE+ +G A + + +L D+ MP MDG Sbjct: 10 KERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 I L RRA E D + +T FA+V ++ L KP Sbjct: 70 INLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPL 113 >gi|193216390|ref|YP_001997589.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] gi|193089867|gb|ACF15142.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] Length = 421 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 58/109 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KILL +DDDD+ + +AL GYEV+ + G +A +E ++L DI MP++DG Sbjct: 22 SSKILLVDDDDDICKICQRALSMLGYEVLIASCGETALQMFKEHEPEIILLDIFMPDLDG 81 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ R +V+ ITG+ + L + L+KPF L +L Sbjct: 82 FDVLRSIRSQSDFPEVILITGYGDMNLVISAMRNGATDFLTKPFDLENL 130 >gi|153002812|ref|YP_001368493.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella baltica OS185] gi|160877557|ref|YP_001556873.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella baltica OS195] gi|217975399|ref|YP_002360150.1| Fis family two component sigma54 specific transcriptional regulator [Shewanella baltica OS223] gi|304412003|ref|ZP_07393613.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS183] gi|307305898|ref|ZP_07585644.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica BA175] gi|151367430|gb|ABS10430.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS185] gi|160863079|gb|ABX51613.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS195] gi|217500534|gb|ACK48727.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS223] gi|304349553|gb|EFM13961.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS183] gi|306911391|gb|EFN41817.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica BA175] gi|315269755|gb|ADT96608.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella baltica OS678] Length = 460 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V +++R F LL+ DI +P GIE Sbjct: 17 VLIVDDEPGMRSFLNKALSKK-FALVETAGSIEDAEQLRSRCHFDLLIVDIRLPGRSGIE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 76 WHEALDEQGRRSDIIFMTGYADMEVAITALRAGASDFIMKPFHLEQMMTAVDRCI 130 >gi|146312680|ref|YP_001177754.1| two component, sigma54 specific, Fis family transcriptional regulator [Enterobacter sp. 638] gi|145319556|gb|ABP61703.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter sp. 638] Length = 445 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +DD + + L L GY VV+ +G + E L+++D+ M EMDG++L Sbjct: 9 LLLVDDDPGLLKLLGMRLVSEGYSVVTAESGQEGLKALGREKIDLVISDLRMDEMDGMQL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 +L P + V+ +T ++ PD+ A V S Sbjct: 69 FVEIQKLQPGMPVIILTAHGSI---PDAVAATQQGVFS 103 >gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus castenholzii DSM 13941] gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus castenholzii DSM 13941] Length = 900 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 39/64 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D D +R L++ L G++ G A D + ++ F L+L D++MP+M+ Sbjct: 1 MPSRILVVDDHDYIRHLLVRLLTSQGHQTSVATGGREALDLLSQQSFDLVLLDLMMPDMN 60 Query: 61 GIEL 64 GIE+ Sbjct: 61 GIEV 64 >gi|91788333|ref|YP_549285.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91697558|gb|ABE44387.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 1049 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 4/81 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED + L L + GYEV NG A + + +L+++D++MPEMDG E Sbjct: 13 KILIVEDSPTQAQQLQHILEQEGYEVGIARNGRLALKMLPQFRPALIISDVIMPEMDGYE 72 Query: 64 LARRATELDPDLK---VMFIT 81 L+RR + PDL+ V+ +T Sbjct: 73 LSRR-IKTQPDLRNIPVILVT 92 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D R L++ + GY S NG A K + F +++TD MPEM+G +L Sbjct: 797 VLLVDDHPVNRMLLMRQVHVLGYAAESAKNGVEALAKWQSRRFGIVITDCNMPEMNGYDL 856 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 AR R E + K + I A AL+ ++ + A + L KP L L ++++ L Sbjct: 857 ARSIRGLESGNEGKHVPIIACTANALSGEAESCFAAGMDDYLVKPVELSQLREKLDQWLP 916 Query: 120 I 120 I Sbjct: 917 I 917 >gi|58270508|ref|XP_572410.1| protein-histidine kinase [Cryptococcus neoformans var. neoformans JEC21] gi|57228668|gb|AAW45103.1| protein-histidine kinase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1614 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ ED+ DMR + I+ L VV NG AY + P +L+L+D++M ++ G Sbjct: 950 NDVVLIVEDNADMREY-IRQLFTPYCTVVEACNGEQAYSMATQNPPNLILSDVLMSKLSG 1008 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNA--KVLSKPFHLRDLVNEVN 115 EL ++ PD +++ + +A+A + A N L+KPF ++L+ V+ Sbjct: 1009 TELLQKIRS-HPDTRIVPMVLISAIAGDESRVEALLNGADDYLAKPFKPKELIARVH 1064 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 18/130 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-------------EPFSL 49 + +L+ ED+ + L + L KAG +NG A + +RE F + Sbjct: 1467 EHVLIVEDNLINQTVLKRQLIKAGLSCNVASNGLEALNIIRETHRQHRRGGPNRKRLFDV 1526 Query: 50 LLTDIVMPEMDGIELAR--RATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKP 104 +L D+ MP MDGI + R +E L V+ +TG A + A V+ KP Sbjct: 1527 VLMDLEMPVMDGITAVQEIRGSEAAGTLGRNMVIALTGNARQGQIDHALASGFDDVVIKP 1586 Query: 105 FHLRDLVNEV 114 + L DL+ ++ Sbjct: 1587 YILVDLLKKI 1596 >gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 230 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D Sbjct: 1 MSHHILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLD 60 Query: 61 GIELAR 66 G+E+ R Sbjct: 61 GLEVVR 66 >gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316] gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ + L + GY+ ++ +NG A + + E L++TDI+MP MDG + Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + ++ ++ +T + + + KP L++L + LL Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117 >gi|308270671|emb|CBX27282.1| hypothetical protein N47_I07020 [uncultured Desulfobacterium sp.] Length = 517 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ +K L K EV NG A ++ F +++TD+ M M G+E Sbjct: 45 RVLIVDDEVNIGNACVKILAKNDLEVNYVKNGHDALAMMKAISFDVVVTDLKMSRMGGME 104 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNE 113 L + E P+ KV+ ITG+A+++ + L KPF LR +V + Sbjct: 105 LLKIIKERYPNTKVIVITGYASISSAVEVMKLGAFDYLPKPFTPVELRSVVQQ 157 >gi|319764387|ref|YP_004128324.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317118948|gb|ADV01437.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 371 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD R F+ +AL E++ C + A A + +L+LTD+ +P+ G++ Sbjct: 7 RVLLLEDDGLARHFVREALDGMALELLPCASLAEARRLLSAHAVALVLTDLHLPDGSGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R E D + + +G L A +VL KP + DL++ V + L Sbjct: 67 LLRWLQERGGDCRTVVFSGGVDDGLRQRLLAQGVWRVLRKPVSVGDLIDCVEQAL 121 >gi|298504958|gb|ADI83681.1| response regulator [Geobacter sulfurreducens KN400] Length = 136 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 38/77 (49%) Query: 29 VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 V +G A + PF ++LTD+VMP+MD I LARRA + P L V T AL Sbjct: 30 VHRVGSGEEALATLHAMPFKIMLTDMVMPDMDAITLARRARRVSPGLTVFMYTDLPTRAL 89 Query: 89 NPDSNAPKNAKVLSKPF 105 + + ++ KP Sbjct: 90 RREISDAGIERIFDKPL 106 >gi|295705733|ref|YP_003598808.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803392|gb|ADF40458.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 268 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 6/89 (6%) Query: 4 KILLAEDDDDMR---RFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 K+L+A+DD R R+ I +L K Y++V NG V +E L L DI MP + Sbjct: 34 KVLIADDDVTSRKLLRYFIGSLSK--YKIVGEAANGEELIHYVTKEKPDLALVDIGMPLL 91 Query: 60 DGIELARRATELDPDLKVMFITGFAAVAL 88 +G+E + EL P L+V+FITG AL Sbjct: 92 NGMEAVKACKELFPTLQVIFITGHDNYAL 120 >gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+AEDD D+ L L ++V+S NG A + V L + DI+MP+++ Sbjct: 1 MNYKILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIMMPKLN 60 Query: 61 GIELARRATEL 71 G EL ++ E+ Sbjct: 61 GFELTKKIREI 71 >gi|291287959|ref|YP_003504775.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290885119|gb|ADD68819.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 233 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +I++ +DD + R L K L + Y V S N A + + + S+++ D++MP ++ Sbjct: 1 MKTRIMIIDDDSKLNRMLNKYLSQYAYIVDSYTNPLEAIEALENDEPSIIILDVMMPHIN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G E +R ++ D+ ++ +T V+ D A + V +SKPF R+LV ++ + Sbjct: 61 GFETCKRIRKIS-DVPIIMLTARGDVS---DRIAGLESGVDDYMSKPFEPRELVARISAI 116 Query: 118 L 118 L Sbjct: 117 L 117 >gi|218886242|ref|YP_002435563.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757196|gb|ACL08095.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1055 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 38/68 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AEDD R + + L + G+ V NGA A E + ++L DI MP MDG E Sbjct: 935 RVLVAEDDLINRLTVQRMLEREGHRAVCVENGADAVRAAGEADYDIILMDIQMPGMDGTE 994 Query: 64 LARRATEL 71 ARR +L Sbjct: 995 AARRINDL 1002 >gi|253700576|ref|YP_003021765.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251775426|gb|ACT18007.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 455 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS---LLLTDIVMPE 58 +KIL+ +D++ + +L K L GY V + + GA+ ++++ S LLL D+ MP+ Sbjct: 3 QEKILICDDEEGILIYLKKLLKTQGYLVETFDCGAALLRRLKDGDPSDADLLLQDVRMPD 62 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 MDGI + + L P L V+ +T F + ++ ++KPF Sbjct: 63 MDGITVLKEVKALRPPLPVVVMTAFGTIDAAVETIKMGAYDYVTKPF 109 >gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 929 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D + R L K G+ VV NG A D R+E F L+ DI MP MDG E Sbjct: 673 ILLVDDVEINRELARIILEKRGHRVVQAANGLEAVDAARKERFDLVFMDIQMPLMDGFEA 732 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 R+ EL L+ + + A AL D + A + ++KP DL + ++ Sbjct: 733 TNEIRSFELSQGLQPVPVIAMTAYALQGDRDRCLAAGMDGYIAKPIKEDDLCRVIGQM 790 >gi|134095909|ref|YP_001100984.1| twitching motility protein. pilH ortholog [Herminiimonas arsenicoxydans] gi|133739812|emb|CAL62863.1| Twitching motility two-component response regulator transcription regulator protein PilH [Herminiimonas arsenicoxydans] Length = 121 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D R FL L K G+ V + NG A K++ + L+L DIVMP +G Sbjct: 4 QKILIVDDSPTERYFLTDILVKKGFSVSTAENGEEALLKIKADKPQLILMDIVMPGQNGF 63 Query: 63 ELARRATELDPDLK 76 ++ R T DP+ + Sbjct: 64 QITRAITR-DPETQ 76 >gi|126661820|ref|ZP_01732819.1| two-component system, transcriptional regulatory protein [Flavobacteria bacterium BAL38] gi|126625199|gb|EAZ95888.1| two-component system, transcriptional regulatory protein [Flavobacteria bacterium BAL38] Length = 232 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL EDD + L L +EV NG ++K +++ + L + D++MP DG Sbjct: 4 KKILLVEDDPNFGAVLKDYLMINDFEVTLAKNGMEGFEKFKKDTYDLCILDVMMPYKDGY 63 Query: 63 ELARRATELDPDLKVMFITG 82 LAR E + ++ ++F+T Sbjct: 64 TLAREIREKNQEVPIVFLTA 83 >gi|150399365|ref|YP_001323132.1| response regulator receiver protein [Methanococcus vannielii SB] gi|150012068|gb|ABR54520.1| response regulator receiver protein [Methanococcus vannielii SB] Length = 121 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ ED++D+ + L +GYEV++ +G + ++++P L++ D++MP M G Sbjct: 2 KKVLIVEDEEDILNLVRIILEISGYEVITAQDGYQGLELIKKKP-DLIILDLMMPGMTGW 60 Query: 63 E-LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E L + +E ++ V+ +T A ++ + K + KPF DL+ +V +L+ + Sbjct: 61 EYLDKIRSEGYSNIPVIVLTANAQISTIETAINKKVDDCIVKPFDRDDLLLKVKAILSNQ 120 Query: 122 N 122 N Sbjct: 121 N 121 >gi|160898586|ref|YP_001564168.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160364170|gb|ABX35783.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 231 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ DM +I L AGYEV +G A D++ P L + DI++P +DG++ Sbjct: 5 RILLVEDETDMAAIVIDYLRHAGYEVEHIRHGREALDRMLRSPPDLTVLDIMLPGLDGLD 64 Query: 64 LARR 67 + R+ Sbjct: 65 ILRQ 68 >gi|83310147|ref|YP_420411.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82944988|dbj|BAE49852.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 387 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 ++ KIL+ +DD ++ + + LG+ + + G A K + E PF++++ D+ MP M Sbjct: 4 LSDKILVVDDDANLLAGIKRLLGQK-LNITTAEGGIEALGKAQNEGPFAVVVCDMRMPGM 62 Query: 60 DGIELARRATELDPDLKVMFITGFA 84 DG+E+ RR E PD + +TG A Sbjct: 63 DGVEVLRRFHEASPDTSRIMLTGNA 87 >gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas palustris CGA009] gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family [Rhodopseudomonas palustris CGA009] gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 224 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 ++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E RR + P L + ++ D+ A ++KPFHL +++ + LL Sbjct: 62 VLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGAD---DYVAKPFHLEEVLARIRALL 116 >gi|114046930|ref|YP_737480.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. MR-7] gi|113888372|gb|ABI42423.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. MR-7] Length = 459 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L++ G + + + + + ++++D+ MP++DGI L Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKAFATTDPKGIAKLLDRDWAGVVISDVNMPQLDGISL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV--NRLLT 119 ++ + DPDL V+ +TGF +A+ ++ L KPF H+ D+V R LT Sbjct: 72 MQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSLT 131 Query: 120 IKN 122 ++N Sbjct: 132 LEN 134 >gi|116748272|ref|YP_844959.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697336|gb|ABK16524.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 447 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L LGKAGY V + G A + + + + L+ D+ M ++DG+E Sbjct: 6 RVLIVDDELIVRESLAGWLGKAGYAVDAAPGGRIAVEMIGAKQYDLIFLDVRMSDLDGME 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +R P+ V+ +T + V D+ L KPF L V +LL K Sbjct: 66 VLKRVKLHYPETLVVMMTAYGTVQNAVDAMKAGADDYLIKPFEPEYLPLLVEKLLKQKR 124 >gi|330960502|gb|EGH60762.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. maculicola str. ES4326] Length = 783 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EVV ++G A +++ F L+L D MP MDG E Sbjct: 661 RVLLVEDNPVNQLVAKGILGKLGCEVVISSHGGEALEQLEHSHFDLVLMDCNMPVMDGYE 720 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R R++ P+L ++ +T A A L+KPF +LV+ +++ + + Sbjct: 721 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWIPL 779 >gi|327482207|gb|AEA85517.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri DSM 4166] Length = 1388 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D D+ + + L G EV + + GA A + + PF ++++DI MPE+DG + Sbjct: 1271 RILLVDDSPDILETMCELLQSEGAEVTTADGGARAIELAEQTPFDVIVSDIGMPEIDGHK 1330 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R + D + +TG+ + + A L KP L+ L++ V++ Sbjct: 1331 MMAIIRQQGANRDTPSIALTGYGTLRDVEKAMAAGFTLHLRKPIDLQALIDAVSQ 1385 >gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 240 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 58/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P +DG+ Sbjct: 5 KKILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPHVDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L V+ I+ + L KPF + +L+ V L Sbjct: 65 EICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALF 120 >gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI] gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 64 LARRATELDPDLKVMFIT 81 + + + D+ ++F+T Sbjct: 65 VCKEIRKT-SDVPIIFLT 81 >gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 230 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD D+ + + K+L G+E + +G A + E ++ DI+MP MD Sbjct: 1 MQKKILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIMMPGMD 60 Query: 61 GIELAR 66 G+++ R Sbjct: 61 GLDVCR 66 >gi|239905029|ref|YP_002951768.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239794893|dbj|BAH73882.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 134 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 51/112 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D++ L K L + G+ V GA A V +PF + + D + + DG+ Sbjct: 7 RVLLVDDEEGFTEVLAKRLRRRGFHAVVALTGAEALAAVAGQPFDVAVVDYRLSDADGLT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L R E P L + +TG + +S A A L KP + +L + Sbjct: 67 LLPRLREAQPGLAALMLTGHGSEEAARESLAAGAAGHLVKPCEIEELAAAIR 118 >gi|237723313|ref|ZP_04553794.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447835|gb|EEO53626.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1337 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ ED+D++R +L + L + Y V C+NG A + E L+++DI+MPEM G Sbjct: 1071 HRRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIPEYKPELVISDIMMPEMRG 1129 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + + +++ I ALN + + ++ + KPF++ L V Sbjct: 1130 DELCQ---AIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVAN 1186 Query: 117 LL 118 LL Sbjct: 1187 LL 1188 >gi|298528785|ref|ZP_07016189.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512437|gb|EFI36339.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1065 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 4/118 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 + IL+ +D+ ++R +AL GY ++G A D K + E L+L D+ MP M Sbjct: 947 ETILVVDDEPEIRELTREALESLGYSARVASSGEEALDIYKQQGENVDLVLLDLNMPGMG 1006 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + + LDP ++V+ +G+A+ L+ + + L KP+ + +L ++ +L Sbjct: 1007 GRKCLQELLHLDPRVRVLIASGYASNGLDVLNIGSRG--YLGKPYQINELAAKIREVL 1062 >gi|224026726|ref|ZP_03645092.1| hypothetical protein BACCOPRO_03483 [Bacteroides coprophilus DSM 18228] gi|224019962|gb|EEF77960.1| hypothetical protein BACCOPRO_03483 [Bacteroides coprophilus DSM 18228] Length = 232 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+++ L + L GY C +G + Y + + + + D++MP+ DG Sbjct: 6 RILLCEDDENLGMLLREYLQAKGYSAELCPDGEAGYKAFLKNKYDMCVLDVMMPKKDGFA 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 LA+ + + ++ ++F+T A L D + K+ ++KPF + +L + +L Sbjct: 66 LAQEIRQANAEIPIIFLT---AKTLKED--ILEGFKIGADDYITKPFSMEELTFRIEAIL 120 >gi|242281036|ref|YP_002993165.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] gi|242123930|gb|ACS81626.1| response regulator receiver protein [Desulfovibrio salexigens DSM 2638] Length = 418 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 10/129 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 K+++AED+ R+ + + L + + V++ +GA A + +++ P LLLTD MP +DG Sbjct: 132 KVVIAEDNSTARKIMQRLLERLNFTVLAGEDGAEALELIKKNPDVQLLLTDYEMPNLDGF 191 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL-------VNE 113 EL R T + ++ ++ + A+ L KPF + + +NE Sbjct: 192 ELVSEVRKTHSRDQMAILGVSAHDSGAITAKFLKRGANDFLKKPFEVEEFSWRVTNNLNE 251 Query: 114 VNRLLTIKN 122 + R+ +IK+ Sbjct: 252 LERIRSIKD 260 >gi|253700603|ref|YP_003021792.1| response regulator receiver protein [Geobacter sp. M21] gi|251775453|gb|ACT18034.1| response regulator receiver protein [Geobacter sp. M21] Length = 119 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D +D+R L + K G+ +V+ NG A +K R + + DI MP Sbjct: 1 MKRRVLIVDDVEDIRVMLRHMIEKQGHTIVAEAANGIEAVEKFRAHRPDVTIMDIDMPLK 60 Query: 60 DGIELARRATELDPDLKVMFIT-GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E AR E +++F + GF+ P + + +L KPF L E+ Sbjct: 61 TGVEAAREIREFARSSRIVFCSGGFSKYETPPAELRTEGSSLLRKPFLPSQLYEEL 116 >gi|167752180|ref|ZP_02424307.1| hypothetical protein ALIPUT_00422 [Alistipes putredinis DSM 17216] gi|167660421|gb|EDS04551.1| hypothetical protein ALIPUT_00422 [Alistipes putredinis DSM 17216] Length = 224 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ +R L +AL K Y V + + A A DK+ + +L DI++P+ +G++ Sbjct: 2 KLLIVEDESSLRELLARALRKEQYVVETASTYAEASDKLAAYSYDCILLDIMLPDGNGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R D V+ I+ ++ L KPFHL +L + ++ Sbjct: 62 LLERLRRADKRENVIIISARDSLEDKVLGLKEGADDYLPKPFHLAELSARIQSVI 116 >gi|195952573|ref|YP_002120863.1| response regulator receiver protein [Hydrogenobaculum sp. Y04AAS1] gi|195932185|gb|ACG56885.1| response regulator receiver protein [Hydrogenobaculum sp. Y04AAS1] Length = 127 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MRR + L + GY + NG A K+ + +LTD MPEMDG+ Sbjct: 9 RILVVDDMSTMRRVIKSILNQLGYSNIEEAENGKDALSKLSSSNYDFVLTDWNMPEMDGL 68 Query: 63 ELARRATELDPDLK---VMFITGFA 84 EL + + DP+LK ++ +T A Sbjct: 69 ELVKTIRQ-DPNLKDLPILMVTAEA 92 >gi|139438103|ref|ZP_01771656.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC 25986] gi|133776300|gb|EBA40120.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC 25986] Length = 230 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + ++L Y V C++G A D + E F L++ D+ +P +DG+ Sbjct: 8 RILIVEDERALCATIARSLRNLAYSVDCCHDGREALDLLGVEVFDLVVLDLNLPHVDGMT 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 + + D + KV+ ++ V+ D A +A L+KPFHL +L + R LT+ Sbjct: 68 VLGELRKTDCETKVLILSARGEVS---DKVAGLDAGANDYLTKPFHLDELAARI-RSLTL 123 Query: 121 K 121 + Sbjct: 124 R 124 >gi|114704744|ref|ZP_01437652.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Fulvimarina pelagi HTCC2506] gi|114539529|gb|EAU42649.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Fulvimarina pelagi HTCC2506] Length = 236 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ + AL GY+V + +G SA D ++ P +L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSVSIALENEGYKVETYTDGLSALDGLQASPPNLAIFDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + D+ V+F+T + + D + KPF R LV V + Sbjct: 64 LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADD-------YIRKPFSQRLLVERVKAI 115 Query: 118 L 118 L Sbjct: 116 L 116 >gi|158320987|ref|YP_001513494.1| response regulator receiver modulated CheW protein [Alkaliphilus oremlandii OhILAs] gi|158141186|gb|ABW19498.1| response regulator receiver modulated CheW protein [Alkaliphilus oremlandii OhILAs] Length = 303 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 12/96 (12%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVRE----------EPFSLL 50 N+ IL+AED + + R L++AL +AGY ++ +NG A+D + + + S + Sbjct: 174 NKPILIAEDSEMLSRILVQALHEAGYSNLIVTDNGREAWDTLEKLRADRTRKLTDQVSCV 233 Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAV 86 +TDI MP+MDG L + + D DL + + F+++ Sbjct: 234 ITDIEMPKMDGHHLT-KLIKTDEDLSKLPVIIFSSL 268 >gi|113969701|ref|YP_733494.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. MR-4] gi|113884385|gb|ABI38437.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. MR-4] Length = 459 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L++ G + + + + + ++++D+ MP++DGI L Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKAFATTDPKGIAKLLDRDWAGVVISDVNMPQLDGISL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV--NRLLT 119 ++ + DPDL V+ +TGF +A+ ++ L KPF H+ D+V R LT Sbjct: 72 MQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSLT 131 Query: 120 IKN 122 ++N Sbjct: 132 LEN 134 >gi|332530116|ref|ZP_08406066.1| multi-sensor signal transduction histidine kinase [Hylemonella gracilis ATCC 19624] gi|332040589|gb|EGI76965.1| multi-sensor signal transduction histidine kinase [Hylemonella gracilis ATCC 19624] Length = 487 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D ++R L + GYEV S +NG + E L+L D+++P MDG E Sbjct: 11 RILVIDDSPEIRLLATVLLEREGYEVSSADNGEDGVKRATETAPDLILLDVMLPGMDGYE 70 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R + +E D+ V+F++ V A ++KP + L+ V Sbjct: 71 VCRWLKQSEALRDIPVIFMSAQDDVPAQTQGFTAGGADYVTKPLSVPVLLARV 123 >gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] Length = 227 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G + Sbjct: 3 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + L KPF +L+ V LL Sbjct: 63 IIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 117 >gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 249 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 7/122 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56 ++L+ ED++ +R L+ AL GYEV++ +G A + +R E F LL+ D+++ Sbjct: 19 RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P+++G+++ R + ++ ++ + L+KPF +R++V Sbjct: 79 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 138 Query: 117 LL 118 LL Sbjct: 139 LL 140 >gi|296135711|ref|YP_003642953.1| response regulator receiver protein [Thiomonas intermedia K12] gi|294339874|emb|CAZ88237.1| Chemotaxis protein CheY [Thiomonas sp. 3As] gi|295795833|gb|ADG30623.1| response regulator receiver protein [Thiomonas intermedia K12] Length = 122 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ + AL AGYEV+ +G A K+ L+++D+ MP MD Sbjct: 1 MAKTILIVDDSASLRQVVNIALASAGYEVIEAVDGVDALTKLDGRKIHLIISDVNMPNMD 60 Query: 61 GIELARR 67 GI L + Sbjct: 61 GITLVKE 67 >gi|253996662|ref|YP_003048726.1| response regulator receiver protein [Methylotenera mobilis JLW8] gi|253983341|gb|ACT48199.1| response regulator receiver protein [Methylotenera mobilis JLW8] Length = 121 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +D R FL + L AGY V+ +G KV P L+L D+VMP + G Sbjct: 4 QTILVVDDSATDRFFLTEMLETAGYRVIGAESGEECLTKVTASPPDLVLCDVVMPGLTGF 63 Query: 63 ELARRATE 70 ++ R T+ Sbjct: 64 QVTRTLTK 71 >gi|223041068|ref|ZP_03611325.1| two component transcriptional regulator, winged helix family [Campylobacter rectus RM3267] gi|222877681|gb|EEF12805.1| two component transcriptional regulator, winged helix family [Campylobacter rectus RM3267] Length = 243 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/110 (24%), Positives = 59/110 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ EDD+++R + ++ +V C N A + +L+++DI MP ++G Sbjct: 11 NVNLLIVEDDENLRSVIKSSIEGYVKKVFDCKNAQEAMECFTSNDINLVVSDINMPRING 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 +++A + D ++ ++F+T + + ++ + VL KPF R+L+ Sbjct: 71 LQMASMIRQSDANVPIIFLTAYDSDENIFEAIELGSFGVLKKPFDKRELI 120 >gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 238 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 58/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD D+ L L GY + +GA A + + + ++ D+++P +DG+ Sbjct: 5 KQILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHVDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR +L L ++ I+ ++ L+KPF +++L+ + L Sbjct: 65 EICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 120 >gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 64 LARRATELDPDLKVMFIT 81 + + + D+ ++F+T Sbjct: 65 VCKEIRKT-SDVPIIFLT 81 >gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L] gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W] gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L] gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W] gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 64 LARRATELDPDLKVMFIT 81 + + + D+ ++F+T Sbjct: 65 VCKEIRKT-SDVPIIFLT 81 >gi|148263042|ref|YP_001229748.1| response regulator receiver protein [Geobacter uraniireducens Rf4] gi|146396542|gb|ABQ25175.1| response regulator receiver protein [Geobacter uraniireducens Rf4] Length = 162 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-----KVREEPFSLLLTDIVM 56 N IL+ +D+ +R I+ LG GY V +C +G A D KV PFS ++ D+ + Sbjct: 44 NGYILVMDDEAFIRDLSIEMLGFLGYRVKTCIDGKEAVDLYKAAKVEGNPFSSVIMDLTI 103 Query: 57 PE-MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 P M G E A+ DP +++ +G++A D + + KP+ + +L Sbjct: 104 PGGMGGKEAAQLILAFDPAARLIVSSGYSADPAMDDYESHGFCAAVVKPYKVEEL 158 >gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] Length = 775 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 653 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 712 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 713 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 755 >gi|329902991|ref|ZP_08273335.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Oxalobacteraceae bacterium IMCC9480] gi|327548543|gb|EGF33207.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Oxalobacteraceae bacterium IMCC9480] Length = 228 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + L ++L ++GY +NG A + + F LL+ D+ +P M G+E Sbjct: 2 RILLAEDDSVLADGLTRSLRQSGYATDCVHNGVEADLALSTQDFDLLILDLGLPRMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R+ + L V+ +T ++ ++KPF L +L V L Sbjct: 62 VLRKLRARNSHLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRAL 115 >gi|319950782|ref|ZP_08024670.1| putative two-component response regulator [Dietzia cinnamea P4] gi|319435539|gb|EFV90771.1| putative two-component response regulator [Dietzia cinnamea P4] Length = 117 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++A+DD+D+R + L AGYEV + +G A + + +L + D++MP + G+++ Sbjct: 1 MIADDDEDIRELVAFKLSNAGYEVRAARDGVEALEAITSFEPALAILDVMMPGLSGLDVL 60 Query: 66 RRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR E D + + +T A A A + KPF R+L+ V+ LL Sbjct: 61 RRLRDGEGPADCRALLLTARARDAEVDAGFAAGADDYVIKPFSPRELLRRVDALL 115 >gi|313204197|ref|YP_004042854.1| two component transcriptional regulator, winged helix family [Paludibacter propionicigenes WB4] gi|312443513|gb|ADQ79869.1| two component transcriptional regulator, winged helix family [Paludibacter propionicigenes WB4] Length = 235 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+++ L + L GY+ +G + Y + + L + D++MP+ DG Sbjct: 7 KILLCEDDENLGMLLREYLQTKGYDADLQPDGEAGYRAFSKNKYDLCVFDVMMPKKDGFA 66 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LA L+ ++ ++F+T L D LSKPF + +L+ + Sbjct: 67 LAADVRSLNSEVPIIFLTAKSMKEDILQGFKLGADD-------YLSKPFSMEELLYRIES 119 Query: 117 LL 118 +L Sbjct: 120 IL 121 >gi|302339427|ref|YP_003804633.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301636612|gb|ADK82039.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 515 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ R L+ AL K GY NG A +KV ++P L+L D++MP++ G + Sbjct: 10 VLVVDDEAINRLLLVTALKKRGYLPEEAANGKDALEKVEQKPPDLILLDVMMPDLTGFGV 69 Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R E D+ V+ +T + + + +SKP ++ +L+ V LL I+ Sbjct: 70 CRSLKERKETADIPVILVTALHSREDIEEGIKAGADEFISKPVNINELMVRVRTLLKIRE 129 >gi|326791727|ref|YP_004309548.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542491|gb|ADZ84350.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL EDD ++ + L GY + +G ++ V+ + L++ D ++P +DG+ Sbjct: 2 RILCIEDDTELAESICFHLKHVGYNIDCSEDGLEGFELVKTNTYDLVILDRMLPSLDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 L +R L+ L V+ +T + D A N+ L KPF + +L+ V L Sbjct: 62 LLKRIRALNLQLPVIMVTALDGIG---DRVAGLNSGADDYLVKPFAIEELIARVGAL 115 >gi|262045124|ref|ZP_06018153.1| transcriptional activator protein Irlr [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037516|gb|EEW38758.1| transcriptional activator protein Irlr [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 232 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + LL+ D+++P+++G + Sbjct: 7 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDVMLPDVNGWD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + ++ +T + L KPF +L+ V LL Sbjct: 67 IVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 121 >gi|237727976|ref|ZP_04558457.1| nitrogen regulation protein NR(I) [Citrobacter sp. 30_2] gi|226910233|gb|EEH96151.1| nitrogen regulation protein NR(I) [Citrobacter sp. 30_2] Length = 472 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + +G D + + +LL+DI MP MDG+ L Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLSCTTFESGKEVLDALASKTPDVLLSDIRMPGMDGLTL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123 >gi|254490397|ref|ZP_05103586.1| heavy metal response regulator subfamily [Methylophaga thiooxidans DMS010] gi|224464530|gb|EEF80790.1| heavy metal response regulator subfamily [Methylophaga thiooxydans DMS010] Length = 226 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ F+ + L +AG+ V +NG Y + E F +++ D+++P++DG Sbjct: 2 RLLVVEDERKAGEFIRQGLTEAGFLVTWMSNGLDGYHQAMTETFDVIILDVMLPDIDGWR 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + E V+F+T +V L KPF +L+ + LL Sbjct: 62 ILKSLREAGNQTPVIFLTARDSVTDRVKGLELGADDYLVKPFAFVELLARIRSLL 116 >gi|209528218|ref|ZP_03276685.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209491340|gb|EDZ91728.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 372 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 10/123 (8%) Query: 6 LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD FLI+A L GY V +G SA + E+P L+L D++MP +DG E+ Sbjct: 15 ILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYEV 74 Query: 65 ARRATELDPDL---KVMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RR +P+L ++ IT ++V D+ A + KP + +L+ V LL Sbjct: 75 TRRIRN-NPNLPFIPILLITAHDQSSVVEGLDAGAD---DFIRKPVEIDELLARVRSLLR 130 Query: 120 IKN 122 +K+ Sbjct: 131 LKH 133 >gi|189207673|ref|XP_001940170.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187976263|gb|EDU42889.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1362 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---------PFSLLLTDIV 55 +L+ ED+ ++ L K L KAG + + +NG A + + P S++L D Sbjct: 1229 VLVVEDNLVNQKVLCKQLTKAGCHISTADNGVWALKHLEKTNFRNNTNGIPLSIILMDCE 1288 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK------VLSKPFHLRD 109 MPEMDG+ R+ E++ + ++ AV N AK V+ KPF + D Sbjct: 1289 MPEMDGLTCCRKIREMEQNGELNRHVPIIAVTANIRGGQIDTAKEAGMDEVIGKPFRIPD 1348 Query: 110 LVNEVNRLL 118 L+ ++ LL Sbjct: 1349 LLAKMKGLL 1357 >gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702] gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702] gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 244 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ ED+D +R F++ L ++GY+V+ +N A A D + L DI+MP MD Sbjct: 2 KRILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G EL R + + ++ ++ + ++KPF +LV V+ Sbjct: 62 GSELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVD 116 >gi|162455249|ref|YP_001617616.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161165831|emb|CAN97136.1| probable two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 156 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-------EPFSLLLTDIVM 56 ++LLAEDD ++RR L AL + GYEV+ ++ + + E P ++++DI M Sbjct: 31 RVLLAEDDRELRRLLATALRRDGYEVLEAHDAKHLLELMGEALVSGNGAPVDVVVSDIRM 90 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P G++L D V+ IT F + ++ VL KP + DL V Sbjct: 91 PGASGLDLLAGLRRDDWTTPVVLITAFGDPETHAEAYRLGADAVLDKPLDVDDLRIVVQT 150 Query: 117 LLTIKN 122 L++++ Sbjct: 151 LVSMRG 156 >gi|163783037|ref|ZP_02178032.1| chemotaxis protein CheY [Hydrogenivirga sp. 128-5-R1-1] gi|159881717|gb|EDP75226.1| chemotaxis protein CheY [Hydrogenivirga sp. 128-5-R1-1] Length = 127 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MRR + L + GY + NG A K+++E F ++TD MPEMDG+ Sbjct: 9 KILVVDDMSTMRRIIRTILNQLGYSNIEEAENGKQALAKLKKEKFDFVVTDWNMPEMDGL 68 Query: 63 ELARRATELDPDLK---VMFITGFA 84 L +A D +LK V+ +T A Sbjct: 69 SLV-KAIRSDDELKHIPVLMVTAEA 92 >gi|126656208|ref|ZP_01727592.1| Response regulator receiver domain protein (CheY) [Cyanothece sp. CCY0110] gi|126622488|gb|EAZ93194.1| Response regulator receiver domain protein (CheY) [Cyanothece sp. CCY0110] Length = 131 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++ILL +DD D+ A K A ++V ++G +K E ++L D+ MP+M Sbjct: 1 MSKRILLVDDDQDILDIAEIAFQKFAQWQVFRASSGLECLEKATTEELDVILLDVSMPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNR 116 DG ++ + DP + + I A AL D + A VL KPF+ + E++ Sbjct: 61 DGFQVV-EILQADPPTQKIPIVLLTARALPRDEQYYREIGIAGVLMKPFNPLTIWRELSE 119 Query: 117 LLTIKN 122 +L ++ Sbjct: 120 ILVLRE 125 >gi|121606171|ref|YP_983500.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120595140|gb|ABM38579.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 680 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EMDGI 62 +LL EDD D+RR + L GY V+ ++ A A + P +L++D+VMP MDG Sbjct: 565 VLLVEDDPDVRRVIRLQLVGLGYPVIEADHAADALLLLTSVPTVGILVSDVVMPGGMDGR 624 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L A++ P +K + I+G++ A A +L KPF +L + ++ L Sbjct: 625 ALCVAASQRAPHVKALLISGYSDGEAASAREAAGFA-LLKKPFTAAELQHALDGL 678 >gi|118581551|ref|YP_902801.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118504261|gb|ABL00744.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 1309 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVM 56 Q ILL +D++ +M R +++ LG Y V + + A + ++ L++TD M Sbjct: 1180 GQSILLVDDEEMLVEMGRIMLEELG---YRVTTETDPLKAVETIKNTMGGIDLVITDKTM 1236 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P M G ELA + +L +L V+ +GF ++ S ++L KPF L L N V+ Sbjct: 1237 PHMSGFELAGKIRQLRSELPVILCSGFHEISDVEKSRGLCINQLLLKPFDLVTLANAVHA 1296 Query: 117 LL 118 L Sbjct: 1297 AL 1298 >gi|125973329|ref|YP_001037239.1| response regulator receiver protein [Clostridium thermocellum ATCC 27405] gi|125713554|gb|ABN52046.1| response regulator receiver protein [Clostridium thermocellum ATCC 27405] Length = 117 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D MR L L + G++VV NG A K +E ++ DI MP DG Sbjct: 2 KRILVVDDAGFMRASLKMMLERNGHQVVGEAENGLVAVTKYKEIRPDIVTMDITMPVCDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 I+ + E DPD KV+ I+ D+ + KPF ++ + +L Sbjct: 62 IKAVKMIKEFDPDAKVIMISSMGQECFVRDAILAGAKGFIVKPFKEDYVIQAIEKL 117 >gi|332297564|ref|YP_004439486.1| response regulator receiver modulated metal dependent phosphohydrolase [Treponema brennaborense DSM 12168] gi|332180667|gb|AEE16355.1| response regulator receiver modulated metal dependent phosphohydrolase [Treponema brennaborense DSM 12168] Length = 338 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62 KIL A+D +R++L L Y+V +C +G A + R +S++L D +MP M GI Sbjct: 7 KILCADDSTSIRQYLTGLLTSWNYDVTACASGTEALEAYRTYSEYSVVLLDWIMPGMTGI 66 Query: 63 ELAR--RATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ R RA + ++ +T + ALN ++ L KPFH +L + Sbjct: 67 DVCRQIRAADKQGYTYIIMLTSKDSTENIVEALNAGAD-----DYLIKPFHPAELQARIQ 121 Query: 116 RLLTI 120 I Sbjct: 122 TAFRI 126 >gi|309790729|ref|ZP_07685278.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308227220|gb|EFO80899.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 252 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D ++ + AL AGY V++ +G A ++++ + L+L DI MPEM+G +L Sbjct: 7 ILIVDDQPELLMGIQMALEAAGYTVITAQDGHLALERLQRDTIDLILADIAMPEMNGYQL 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 R L++ F+ A A+ D K+ V L+KP DL+ V Sbjct: 67 FERVRATPRLLRIPFVF-LTARAMASDIRYGKSLGVDDYLTKPIKPEDLLAVVE 119 >gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli H736] Length = 708 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 586 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 645 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 646 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 688 >gi|297516783|ref|ZP_06935169.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli OP50] Length = 374 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL Sbjct: 138 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 197 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 198 TRKLREQNSSLPIWGLTANA 217 >gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 224 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ + + + + L + GY V +GA+ +K+ P+ L++ DI++PE++G Sbjct: 3 KILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIMLPEINGYN 62 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + E V+ I+ + LN ++ LSKPF + +L+ V +L Sbjct: 63 ILKHIRENKILTPVLMISAKGEIDDRIKGLNSGAD-----DYLSKPFSIAELIARVKAIL 117 >gi|290980139|ref|XP_002672790.1| predicted protein [Naegleria gruberi] gi|284086369|gb|EFC40046.1| predicted protein [Naegleria gruberi] Length = 887 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 2/117 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +I++AED+ R+ L K L G+EV +G +K+ L++TD+ MP M G Sbjct: 766 NIQIIIAEDNAINRKVLTKMLRSLGFEVDVAVDGRQLVEKIDPTRHKLVITDMHMPFMSG 825 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE ++ D+K++ +T A N + A V+ KP DL N + +L Sbjct: 826 IEASKIIKTKYKDIKIIMLT--ADALTNAEYYASVVDAVICKPCTRNDLQNGIQAML 880 >gi|322417614|ref|YP_004196837.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] gi|320124001|gb|ADW11561.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] Length = 465 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 54/111 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD ++R+ L L GYE ++ NG + ++E L L D+ +P++ G+E Sbjct: 5 RILIIDDDPNLRKTLSDILRIKGYETLTAENGGAGLAVLQETKVRLALIDLGLPDIPGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R P + +TG A + + L KP+ + L+N + Sbjct: 65 VLARIKADYPMTGAIVLTGEATIESAVQATNSGAFSYLVKPYEIDQLINHI 115 >gi|300771262|ref|ZP_07081138.1| histidine kinase [Sphingobacterium spiritivorum ATCC 33861] gi|300761932|gb|EFK58752.1| histidine kinase [Sphingobacterium spiritivorum ATCC 33861] Length = 1336 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + +L+ ED+ D+ FL+K+L + Y+V + NG E L+++D+ MP+MD Sbjct: 1087 LKRSLLIVEDNRDVADFLLKSL-ELEYDVYTAANGEEGVQMALEILPQLIISDVSMPKMD 1145 Query: 61 GIELAR--RATELDPDLKVMFITGF-AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+EL R ++ + V+ +T V + A NA ++ KPF ++ L+ +++ Sbjct: 1146 GVELTRILKSDPATSHIPVILLTAMDKEVQITAGYLAKANAYII-KPFSIQVLLLQISNQ 1204 Query: 118 L 118 L Sbjct: 1205 L 1205 >gi|229525659|ref|ZP_04415064.1| response regulator [Vibrio cholerae bv. albensis VL426] gi|229339240|gb|EEO04257.1| response regulator [Vibrio cholerae bv. albensis VL426] Length = 365 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 24 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 83 Query: 65 ARRATELDPDLKVMFITG 82 + P L ++ ++ Sbjct: 84 VEEVSSSYPSLPLVVVSA 101 >gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] Length = 1594 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 9/122 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL AED R L + L K GY+ NG A ++ + F+++LTD MPEMDG EL Sbjct: 1339 ILCAEDQPTNRLVLSQQLTKLGYQFEMTENGQQALERWIDGDFAMVLTDCHMPEMDGFEL 1398 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLT 119 R E + L I A AL ++ A + +SKP + L N++L+ Sbjct: 1399 TSEIRRIESEMGLDRTTIVAITANALVGEAEHCLEAGMDDYISKPVEIAKL----NKVLS 1454 Query: 120 IK 121 ++ Sbjct: 1455 LR 1456 >gi|218887817|ref|YP_002437138.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758771|gb|ACL09670.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1007 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEMDGIE 63 L+ +D+ + + L K GY V N A ++ R +P S L++TD MP M G E Sbjct: 887 LVVDDEAPLAAIMGAMLEKLGYRAVVTANPLDALERFRADPASWRLVVTDQTMPGMTGTE 946 Query: 64 LARRATELDPDLKVMFITGFA 84 L R L PDL V+ +GF+ Sbjct: 947 LTRHMRALRPDLPVVLCSGFS 967 >gi|170077489|ref|YP_001734127.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885158|gb|ACA98871.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 764 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 42/69 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ ++ + K L GY+V +NG + V ++ + ++L DI MPEMDG++ Sbjct: 642 KILLAEDNLTNQKVVAKILKNLGYQVDIVSNGLEVLEAVEQQIYDVILMDIQMPEMDGLD 701 Query: 64 LARRATELD 72 + +L+ Sbjct: 702 ATKALLKLN 710 >gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa] Length = 1027 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 10/126 (7%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 +KIL+ +D+ R AL K G VV ++G A +R F DI MPEMDG Sbjct: 899 RKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMDG 958 Query: 62 IELARRATELDPDLK---------VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 E RR E++ ++K ++ +T A + + + +SKPF L Sbjct: 959 FEATRRIREIENNVKDRELFVHLPILAMTADVMQATHQECSKCGMDGYVSKPFEAEQLYR 1018 Query: 113 EVNRLL 118 EV++ Sbjct: 1019 EVSKFF 1024 >gi|75765938|pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of The Transcription Regulator Ntrc1 From Aquifex Aeolicus gi|75765939|pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of The Transcription Regulator Ntrc1 From Aquifex Aeolicus Length = 150 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD R L + L G +V S G AY + E+ F+++L +++P+++G+E+ Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLXLLLPDVNGLEI 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + E P+ +V+ ITG + ++ L+KP L ++ +N+ Sbjct: 63 LKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINK 114 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD+ L L Y V ++G +A++ ++ + L+L D+++P +DGI Sbjct: 2 KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVMLPRLDGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ + ++ +TG + A+ D+ A + KPF +LV V LL Sbjct: 62 LCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGAD---DYVVKPFDEEELVARVRALL 116 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L +DD + L L G +V++ ++ ++ +R+ LL+ D+ MP +GIE Sbjct: 380 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 439 Query: 64 LARRATELDP---DLKVMFIT 81 L + DP +L ++F+T Sbjct: 440 LC-QVVRNDPQWSELPILFLT 459 >gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D++ L+K L Y V C NG A D + + L++ DI++P +DG++ Sbjct: 2 RVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGLQ 61 Query: 64 LARR 67 + +R Sbjct: 62 VLQR 65 >gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 51/115 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ +RR L ALG+AGY V +G R+ P L + D+ +P G+E Sbjct: 2 RLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRFSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R L V+ +T L KPF + +L+ V LL Sbjct: 62 LIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALL 116 >gi|238785632|ref|ZP_04629610.1| Nitrogen regulation protein NR(I) [Yersinia bercovieri ATCC 43970] gi|238713467|gb|EEQ05501.1| Nitrogen regulation protein NR(I) [Yersinia bercovieri ATCC 43970] Length = 470 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + ++G D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCATFDSGNQVLDALATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|134117976|ref|XP_772369.1| hypothetical protein CNBL2360 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254982|gb|EAL17722.1| hypothetical protein CNBL2360 [Cryptococcus neoformans var. neoformans B-3501A] gi|125987880|dbj|BAF47079.1| CnHHK3 [Cryptococcus neoformans var. neoformans] Length = 1690 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +L+ ED+ DMR + I+ L VV NG AY + P +L+L+D++M ++ G Sbjct: 950 NDVVLIVEDNADMREY-IRQLFTPYCTVVEACNGEQAYSMATQNPPNLILSDVLMSKLSG 1008 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNA--KVLSKPFHLRDLVNEVN 115 EL ++ PD +++ + +A+A + A N L+KPF ++L+ V+ Sbjct: 1009 TELLQKIRS-HPDTRIVPMVLISAIAGDESRVEALLNGADDYLAKPFKPKELIARVH 1064 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 18/130 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-------------EPFSL 49 + +L+ ED+ + L + L KAG +NG A + +RE F + Sbjct: 1543 EHVLIVEDNLINQTVLKRQLIKAGLSCNVASNGLEALNIIRETHRQHRRGGPNRKRLFDV 1602 Query: 50 LLTDIVMPEMDGIELAR--RATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKP 104 +L D+ MP MDGI + R +E L V+ +TG A + A V+ KP Sbjct: 1603 VLMDLEMPVMDGITAVQEIRGSEAAGTLGRNMVIALTGNARQGQIDHALASGFDDVVIKP 1662 Query: 105 FHLRDLVNEV 114 + L DL+ ++ Sbjct: 1663 YILVDLLKKI 1672 >gi|315651729|ref|ZP_07904734.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315485984|gb|EFU76361.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 223 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ + + + L GYEV +G +A + + L++ D++MP+M G E Sbjct: 2 KILLAEDEVGLSKAYAQVLIMQGYEVEQVYDGKAALEAANSSTYDLMIFDVMMPKMSGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + + E V+ +T + + + + L+KP L++LV + L Sbjct: 62 VLKALREAGNTTYVIMLTAMSELDDKIEGLELGADEYLTKPIPLKELVARIRSL 115 >gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 840 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + + L K+G++V NG A D + + F +L DI MP MDG+E Sbjct: 663 RVLLVEDDPSNQLPMKRLLQKSGHQVSLAGNGQKALDMLAHQDFDCILMDIQMPGMDGME 722 Query: 64 LARR 67 RR Sbjct: 723 ATRR 726 >gi|218681085|ref|ZP_03528982.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 233 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD +R L + L + G+ V +GA A K+ F L++ D++MP GIE+ Sbjct: 14 LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGIEV 73 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R RA + ++ ++ +T A + LSKPF R+LV +N +L Sbjct: 74 TRGLRAIK---NVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNIL 126 >gi|213963659|ref|ZP_03391910.1| DNA-binding response regulator RprY [Capnocytophaga sputigena Capno] gi|213953654|gb|EEB64985.1| DNA-binding response regulator RprY [Capnocytophaga sputigena Capno] Length = 249 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 57/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++ILL ED + L L +G++V NG ++ ++E F + + D++MP DG Sbjct: 14 DKRILLVEDAPNFGTVLKDYLVMSGFDVTLAKNGMEGFELFKKEIFDMCILDVMMPYKDG 73 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 LAR E + + ++F+T L+KPF L+ ++ +L K Sbjct: 74 FTLAREIREKNEKIPIIFLTARTMREDVIKGYKSGGDDYLNKPFDSEILLMKIRSMLQRK 133 Query: 122 N 122 N Sbjct: 134 N 134 >gi|254460974|ref|ZP_05074390.1| transcriptional regulator [Rhodobacterales bacterium HTCC2083] gi|206677563|gb|EDZ42050.1| transcriptional regulator [Rhodobacteraceae bacterium HTCC2083] Length = 127 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+AED+ L + L GY + NG + + E + L+LTDI MPEMDG+ Sbjct: 9 KRLLVAEDNSINLLVLSRFLETFGYGFDAVGNGLDCLNLINENFYDLVLTDISMPEMDGL 68 Query: 63 ELA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA R T+ D+ ++ +T A +VL+KPF +L + R L Sbjct: 69 QLATEIRAMTDAKRDIPIIAMTANAETEAAERFVKAGINEVLAKPFDKTELKYCIERWL 127 >gi|119505209|ref|ZP_01627284.1| response regulator receiver domain [marine gamma proteobacterium HTCC2080] gi|119458900|gb|EAW40000.1| response regulator receiver domain [marine gamma proteobacterium HTCC2080] Length = 126 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL ED++ R L + L + GY + +G A DK+R+ +L+L DI +P D Sbjct: 5 MSRHLLLVEDNEVNREMLQRRLQRVGYTLDCAADGQEALDKMRDVKPALVLLDINLPIKD 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 G + + A D D++ + I A A+ D A +KP +LV ++ L Sbjct: 65 GWTVVKEARS-DSDIQDIPIIALTAHAMESDRQQALASGCRDYATKPIDFPELVIKIENL 123 Query: 118 LT 119 LT Sbjct: 124 LT 125 >gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311] gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311] Length = 255 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +RR L+ L AGY VVS +G A +K E L++ D+++P+MDG + Sbjct: 12 ILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLPKMDGFAV 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 RR + + ++F++ +++ L KPF ++L Sbjct: 72 CRR-LRAESCVPIIFLSALESISERVAGLDLGADDYLPKPFSPKEL 116 >gi|114568628|ref|YP_755308.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339090|gb|ABI64370.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 236 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 11/119 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD+++ + L GY V + N+GASA + E+P L + DI MP MDG+EL Sbjct: 4 IALVDDDENIITSVSIFLEGEGYNVRTYNDGASALTALAEDPPDLGIFDIKMPRMDGLEL 63 Query: 65 ARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + +L V+F+T A+ LN ++ ++KPF R L V +L Sbjct: 64 LRRLRQ-SSNLPVIFLTSKDDEFDEALGLNLGAD-----DYIAKPFSQRLLGERVKAVL 116 >gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1033 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+D + L K G V +G A + ++ + F L+L D+ MP M GIE Sbjct: 705 RVLLVEDNDLNQEVASSFLRKRGVSVTVAWHGGEAVELIQHQQFDLVLMDLHMPVMGGIE 764 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 ARR EL P K + I A + D + A + ++KP DL Sbjct: 765 AARRIREL-PQGKNLPIVAMTAAVMEEDRARCRAAGMNGFVAKPVEPEDL 813 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 11/113 (9%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMP 57 +++L+ +D R+ L + L G E +G A +V E PF +L D MP Sbjct: 560 KRVLVVDDQATSRQILSRLLQAWGMEATEAESGPQALARVAEANRAGRPFHAVLLDWRMP 619 Query: 58 EMDGIELAR------RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 M G+E+A A L L+V+ +T + +L + A VL+KP Sbjct: 620 GMSGLEVATALKAQDEAKGLPTPLQVLMVTAYDKQSLLQEPEAANIDGVLTKP 672 >gi|56475964|ref|YP_157553.1| sigma-54 dependent DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56312007|emb|CAI06652.1| Sigma-54 dependent DNA-binding response regulator [Aromatoleum aromaticum EbN1] Length = 459 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 41/81 (50%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 LL DDD R LI+ L EV +GA A + E F+L+L D +P +G+EL Sbjct: 5 LLVVDDDHYTRTLIRRLLDKSAEVHVAADGAEARRRFAAEDFNLVLMDQCLPADNGLELL 64 Query: 66 RRATELDPDLKVMFITGFAAV 86 R P + + ITGFA V Sbjct: 65 REFRAQRPKMVAILITGFADV 85 >gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 1637 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV----RE-EPFSLLLTDIV 55 +N ++L+A+D D+R L KAG EV NG A D V R+ +PF L L D+ Sbjct: 1513 LNARVLIADDMRDVRFVAQHFLKKAGCEVEVAENGRQAVDMVVAASRDGKPFELCLMDMQ 1572 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MPE+DG+ R + +L V+ +T A + LSKP +VN Sbjct: 1573 MPELDGLGAVRELRQRGIELPVIALTADAMKGTRRRLITEGFDEYLSKPL-------KVN 1625 Query: 116 RLLTI 120 RLL I Sbjct: 1626 RLLRI 1630 >gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23] gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23] gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W] gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II] Length = 235 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 14/120 (11%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L Y+V + +G A DKVR EPF ++ D+++P + G+ Sbjct: 2 KKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSGL 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 ++ R+ E +M +T + L D ++KPF R+++ + Sbjct: 62 DVTRKIREDKIQTPIMILTAKDNETDKIVGLELGADD-------YVTKPFSPREIIARIK 114 >gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 64 LARRATELDPDLKVMFIT 81 + + + D+ ++F+T Sbjct: 65 VCKEIRKT-SDVPIIFLT 81 >gi|329961555|ref|ZP_08299636.1| putative transcriptional regulatory protein afsQ1 [Bacteroides fluxus YIT 12057] gi|328531767|gb|EGF58596.1| putative transcriptional regulatory protein afsQ1 [Bacteroides fluxus YIT 12057] Length = 237 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 12/125 (9%) Query: 4 KILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL EDD + + L GYEV++ NG +E ++++D+ MPEM+G Sbjct: 6 KLLLVEDDITLTYVVKNTLEGLIGGYEVITAANGQEGLKAYKEHRPDIIISDVEMPEMNG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 +++ R E+D D ++ A AL ++ K+ + KPF +L ++ Sbjct: 66 LQMLERIREVDCDTPILL-----ASALGTPTDVTNGYKLGADNYVKKPFVAEELDAHIHA 120 Query: 117 LLTIK 121 LL ++ Sbjct: 121 LLKLR 125 >gi|325579099|ref|ZP_08149055.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae ATCC 33392] gi|325159334|gb|EGC71468.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae ATCC 33392] Length = 235 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 16/122 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +DD ++ L + L G+E+ NNG A DK+ L+L D++MP ++GIE Sbjct: 3 KILLVDDDIELTDLLAEVLRLTGFEIEVANNGQEALDKLNAS-HQLVLLDVMMPVLNGIE 61 Query: 64 LARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 ++ ++ ++ VM +T + L D P KPF+ R+LV + Sbjct: 62 TLKKIRQIS-NIPVMMLTARGEEIDRVLGLELGADDYLP-------KPFNDRELVARIKA 113 Query: 117 LL 118 +L Sbjct: 114 IL 115 >gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 221 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R L L + GYEVV +G A K+ + SL++ D+++P + G E Sbjct: 3 RVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKIPQA--SLVVLDLMLPRLSGWE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +AR P+L V+ +T + L D ++KPF R++V V Sbjct: 61 VARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDY-------VTKPFSPREVVARVRA 113 Query: 117 LL 118 LL Sbjct: 114 LL 115 >gi|258592617|emb|CBE68926.1| putative response regulator in two-component regulatory system, sigma 54-dependent [NC10 bacterium 'Dutch sediment'] Length = 460 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 39/63 (61%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ R L + L GYEV + +G A +K E SL++ D++MP+MDGI Sbjct: 5 RILIADDEPASRAGLQELLASWGYEVTAAADGQEALEKASELQPSLIIADLIMPKMDGIA 64 Query: 64 LAR 66 L R Sbjct: 65 LLR 67 >gi|282900664|ref|ZP_06308606.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194464|gb|EFA69419.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD + L GY V++ ++G +A +++E L++TDI+MP M+ Sbjct: 1 MPLKILVVDDDIGTSLSISDYLELCGYSVLTADDGENALSIIQQEHLDLMVTDIIMPRMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G EL RR + + + +++ + A + + L KPF L +L V L Sbjct: 61 GYELVRRVRQ-NIEFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELSAAVRNL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|229529859|ref|ZP_04419249.1| response regulator [Vibrio cholerae 12129(1)] gi|262189931|ref|ZP_06048246.1| response regulator [Vibrio cholerae CT 5369-93] gi|229333633|gb|EEN99119.1| response regulator [Vibrio cholerae 12129(1)] gi|262034190|gb|EEY52615.1| response regulator [Vibrio cholerae CT 5369-93] gi|327483761|gb|AEA78168.1| Response regulator [Vibrio cholerae LMA3894-4] Length = 365 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 24 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 83 Query: 65 ARRATELDPDLKVMFITG 82 + P L ++ ++ Sbjct: 84 VEEVSSSYPSLPLVVVSA 101 >gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 928 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 37/64 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED + L +AG+EVV +NG A + F L+L DI MPE+DG+E Sbjct: 684 RVLLAEDHPTNALLTRRLLERAGHEVVQVSNGLEAVATWAAQRFDLVLMDIQMPELDGLE 743 Query: 64 LARR 67 RR Sbjct: 744 ATRR 747 >gi|225849130|ref|YP_002729294.1| chemotaxis protein CheY [Sulfurihydrogenibium azorense Az-Fu1] gi|225644563|gb|ACN99613.1| CheY chemotaxis protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 130 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL +D MR+ + L + GY V NG A K++++ + L+L D MPEMDGI Sbjct: 8 KILTVDDMATMRKIIKSLLTQLGYTNVDEAENGKEALAKLKQQKYDLVLLDWNMPEMDGI 67 Query: 63 ELARRATELDPDLK---VMFITGFA 84 L + + DPDLK V+ +T A Sbjct: 68 TLLQEIKK-DPDLKNIPVIMVTAEA 91 >gi|171318324|ref|ZP_02907483.1| putative CheA signal transduction histidine kinase [Burkholderia ambifaria MEX-5] gi|171096466|gb|EDT41364.1| putative CheA signal transduction histidine kinase [Burkholderia ambifaria MEX-5] Length = 593 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 469 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMDGWNAVRSDAFDLVVTDVDMPRMDG 528 Query: 62 IELARRATELDPDLK---VMFIT 81 IEL DP LK VM ++ Sbjct: 529 IELV-TLIRSDPALKRVPVMIVS 550 >gi|251798112|ref|YP_003012843.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545738|gb|ACT02757.1| two component transcriptional regulator, AraC family [Paenibacillus sp. JDR-2] Length = 501 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +IL+A+DDD R L + + + EV ++GA A + ++LTDI MP+++ Sbjct: 2 RILIADDDDYTREGLSETIDFEKFGIREVFLASDGAEALRLASLKKPDIVLTDIRMPKLN 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 GIE A + E P +++F++G+ V + + + KP L Sbjct: 62 GIEFAEKLAETSPGCQLLFMSGYMDVEYLRSAIKLSAVEYIEKPLKL 108 >gi|218779274|ref|YP_002430592.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760658|gb|ACL03124.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1016 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ +D+ R ++L K GY V + + +A D P F L+LTD+ MP + Sbjct: 894 ERILVVDDEPQTLRMTKRSLEKLGYLVHAEESSLAALDHFSNNPDSFDLILTDMTMPGLT 953 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G LA++ + P++ ++ TG A + + K L KP + L + L Sbjct: 954 GDVLAQKILAVRPEIPIILCTGCADAGVFRKEAGLEAVKFLQKPVDRQVLAQTIKEAL 1011 >gi|297582941|ref|YP_003698721.1| response regulator receiver protein [Bacillus selenitireducens MLS10] gi|297141398|gb|ADH98155.1| response regulator receiver protein [Bacillus selenitireducens MLS10] Length = 121 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 11/125 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58 M ++IL+A+D+ ++ + L GY+V NG A D + ++ F L++ D +MPE Sbjct: 1 MTKRILVADDEQVLQMLIEDTLSDEGYDVTVVENGKRAKDMILDDSHRFDLVIVDYMMPE 60 Query: 59 MDGIE--LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNE 113 + G+E +A + T P +M A +L+ D++A + +SKPF DLV + Sbjct: 61 LTGMEVIIAVKQTLSSPPPFLM----LTARSLDSDASAYLDEGADGFMSKPFKPSDLVEK 116 Query: 114 VNRLL 118 V LL Sbjct: 117 VADLL 121 >gi|78776210|ref|YP_392525.1| two component transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78496750|gb|ABB43290.1| two component transcriptional regulator, winged helix family [Sulfurimonas denitrificans DSM 1251] Length = 224 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 56/105 (53%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 ++ +DD ++ + K L EV S + SA++ ++E S++++DI +P M+ ++ A Sbjct: 10 IIVDDDKNISSNMFKLLKLYFKEVHSFEDAESAFEFIQENSVSIIISDIELPGMNELKFA 69 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 ++ E D ++++ +T FA + ++ + L KP L L Sbjct: 70 KKVKEFDESIEILILTSFATLEYLKEAASLHLIDYLEKPISLDKL 114 >gi|37676235|ref|NP_936631.1| chemotaxis signal transduction protein [Vibrio vulnificus YJ016] gi|37200776|dbj|BAC96601.1| chemotaxis signal transduction protein [Vibrio vulnificus YJ016] Length = 327 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 14/80 (17%) Query: 2 NQKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKV-------REE--PFSLLL 51 N K ++ DD R LI+ L AGY +++C +G A+DK+ REE P S L+ Sbjct: 191 NAKTIMVVDDSAFIRSLIQETLTSAGYNIIACKDGGEAHDKLMNLIEVAREENLPLSELI 250 Query: 52 ----TDIVMPEMDGIELARR 67 TD+ MP MDG+ L +R Sbjct: 251 DAVVTDVEMPRMDGMHLVKR 270 >gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 228 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD ++R + L G + N A K+ E+ F L++ DI+MPEMD Sbjct: 1 MDGNILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQAFDLIILDIMMPEMD 60 Query: 61 GIELARRATE 70 GIE + E Sbjct: 61 GIEACMKIRE 70 >gi|88861092|ref|ZP_01135727.1| CheY-like receiver protein [Pseudoalteromonas tunicata D2] gi|88817020|gb|EAR26840.1| CheY-like receiver protein [Pseudoalteromonas tunicata D2] Length = 120 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL +D MR+ + L KAG++V +G+ A ++ F +++D+ MP MDGI Sbjct: 2 KKILAVDDSASMRQMVGFTLKKAGFDVTEAKDGSEALAIAKQATFDAVISDVNMPIMDGI 61 Query: 63 ELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R L P+ K ++ +T + + + A + KPF+ L+ + +++ Sbjct: 62 TLIRELRAL-PEYKFTPMLMLTTESGLDKKTEGKAAGATGWIVKPFNPEQLLAVIKKVI 119 >gi|163848627|ref|YP_001636671.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222526562|ref|YP_002571033.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163669916|gb|ABY36282.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222450441|gb|ACM54707.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 437 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 40/64 (62%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ D+ L + L GYEV NG ++ +E+P L+L D++MP MDG+E Sbjct: 6 RILVAEDEPDVGMLLREILVSEGYEVELVPNGHLLVERAQEQPPDLILVDLLMPLMDGLE 65 Query: 64 LARR 67 R+ Sbjct: 66 AIRQ 69 >gi|331698992|ref|YP_004335231.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953681|gb|AEA27378.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 218 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD + L +AL + GY V ++G +A + VR LL+ D+ +P MDG+E+ Sbjct: 4 VLLAEDDAAIAEPLSRALQREGYHVDVADDGTAALEHVRSGGVDLLVLDLGLPGMDGLEV 63 Query: 65 ARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR PDL V+ +T V L+ ++ + KPF L +L+ V LL Sbjct: 64 CRRLRLDFPDLPVLMLTARTDEVDFVVGLDAGAD-----DYVGKPFRLAELLARVRALL 117 >gi|323700434|ref|ZP_08112346.1| response regulator receiver protein [Desulfovibrio sp. ND132] gi|323460366|gb|EGB16231.1| response regulator receiver protein [Desulfovibrio desulfuricans ND132] Length = 123 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 57/112 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +D+ L K L K GY V + +G+ +R+ F + + D+ + +MDGIE Sbjct: 7 RVLLVDDELGFLEVLAKRLRKRGYAVTAAGSGSEGIRVLRDNDFDVAVLDLKLEDMDGIE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + ++ P+L V+ +TG + + L KP L DL+++V Sbjct: 67 VLQIMKKMVPELPVIMLTGHGSEQAAREGVESGAFDYLLKPCDLDDLLDKVG 118 >gi|289626956|ref|ZP_06459910.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866134|gb|EGH00843.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 782 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G EV+ ++G A +++ ++ F L+L D MP MDG E Sbjct: 660 RVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQDHFDLVLMDCNMPVMDGYE 719 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +R R++ P+L ++ +T A A L+KPF +L +++ + I Sbjct: 720 ASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWIPIA 779 Query: 122 N 122 + Sbjct: 780 D 780 >gi|288556695|ref|YP_003428630.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547855|gb|ADC51738.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 230 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 6/119 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ +M++ L + + Y++ + ++ A + +E L+L DI+MPEM G Sbjct: 2 KKILIIDDEREMQKLLELCIQSSSYDIRTLSSAIEAEFYLNKEDIHLILLDIMMPEMTGF 61 Query: 63 ELARRATELDPDLKVMFITGF---AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + EL ++ V+ IT AV + A ++KPF R+L V ++ Sbjct: 62 EFLKLINELQKEIPVILITAMDDTEAVVKGLELGA---YDFITKPFEPRELKARVQSVI 117 >gi|266625461|ref|ZP_06118396.1| sensor protein BarA [Clostridium hathewayi DSM 13479] gi|288862634|gb|EFC94932.1| sensor protein BarA [Clostridium hathewayi DSM 13479] Length = 278 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 K L+ +DD + + L + G + ++G A D++RE + ++L D MPE Sbjct: 11 KTLVVDDDVAVCESAVVTLHEMGIKAEWVDSGRKAVDRIRECWARGAYYDMVLIDWKMPE 70 Query: 59 MDGIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDGIE AR+ + PD+ ++ +T + ++ ++ ++SKP LV+ +R Sbjct: 71 MDGIETARQIRRIVGPDVTIIIMTAYDWSSIEHEAKLAGVNLLMSKPMFKSSLVSAFSRA 130 Query: 118 L 118 L Sbjct: 131 L 131 >gi|266623691|ref|ZP_06116626.1| sensory box sensor histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288864496|gb|EFC96794.1| sensory box sensor histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 153 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEP--FSLLLTDIVMPE 58 +++LLAED++ R L G+ V +G A D +EP F ++L DI MP Sbjct: 26 GRRVLLAEDNELNREIAQTILEMNGFTVTCAVDGQEALDLYCGKEPGWFDVVLMDIRMPV 85 Query: 59 MDGIELARRA-TELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEV 114 MDG+E ARR T PD + + I A A + D+ + + LSKP + ++ + Sbjct: 86 MDGLESARRIRTSGHPDARTIPIIALTANAFDEDTKKSLASGMNGHLSKPIQVDQMLEVL 145 Query: 115 NRLLTI 120 R + + Sbjct: 146 GRCMGL 151 >gi|229523163|ref|ZP_04412570.1| response regulator [Vibrio cholerae TM 11079-80] gi|229339526|gb|EEO04541.1| response regulator [Vibrio cholerae TM 11079-80] Length = 365 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 24 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 83 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 84 VEEVSSSYPSLPLVVVSATEEMA 106 >gi|256829200|ref|YP_003157928.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256578376|gb|ACU89512.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 120 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ I+ +D +R+ + L AGY V+ +G A K+ P +++TD+ MP M+ Sbjct: 1 MSKTIMTVDDSASVRQMVSLTLKDAGYAVIEACDGKDALAKL-SGPVDMIVTDLNMPNMN 59 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIEL R RAT + ++ +T + + + A + KPF L+ +LL Sbjct: 60 GIELIRAVRATPQYKFVPIIMLTTESQASTKEEGKAAGATGWIVKPFKPDQLLAVAKKLL 119 >gi|218291330|ref|ZP_03495290.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218238776|gb|EED05990.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 221 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + FL L +G EV + +A ++ R + + LLL DIV+P M G++ Sbjct: 2 RVLIVEDEPGLVEFLRLELELSGVEVDVAMDAETALERARSQAYDLLLVDIVLPGMSGVD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R ++ +M +T AVA L KPF + +L Sbjct: 62 LCREVRRF-SNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEEL 107 >gi|254474792|ref|ZP_05088178.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ruegeria sp. R11] gi|214029035|gb|EEB69870.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ruegeria sp. R11] Length = 465 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+A+DD +R L +AL +AG +V + ++ + V E ++++D++MP+ + Sbjct: 1 MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVMMPDGN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + E P L V+ I+ + + + L KPF L +L+ + L+ Sbjct: 61 GLEMLPKIAEDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPELMKRTAKALSE 120 Query: 121 KN 122 K Sbjct: 121 KR 122 >gi|219852369|ref|YP_002466801.1| response regulator receiver protein [Methanosphaerula palustris E1-9c] gi|219546628|gb|ACL17078.1| response regulator receiver protein [Methanosphaerula palustris E1-9c] Length = 163 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVM 56 + ++LL +D++ + + + L + G+EVV +G+ A RE + F ++ D+ + Sbjct: 37 SGRVLLMDDEESILDVMSQMLKRRGFEVVCARDGSEAITAYREAFLADQRFDAVIMDLTI 96 Query: 57 PE-MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 P M G E E+DP + + +G++ + D + V+ KP+ + DLV +N Sbjct: 97 PGGMGGKEAITTLQEIDPTVAAIVSSGYSNDPIMADFRTYGFSGVVPKPYSINDLVIALN 156 Query: 116 RLLT 119 +++T Sbjct: 157 QVIT 160 >gi|153834472|ref|ZP_01987139.1| CheV [Vibrio harveyi HY01] gi|156973579|ref|YP_001444486.1| hypothetical protein VIBHAR_01282 [Vibrio harveyi ATCC BAA-1116] gi|269961594|ref|ZP_06175956.1| chemotaxis protein CheV [Vibrio harveyi 1DA3] gi|148869168|gb|EDL68200.1| CheV [Vibrio harveyi HY01] gi|156525173|gb|ABU70259.1| hypothetical protein VIBHAR_01282 [Vibrio harveyi ATCC BAA-1116] gi|269833635|gb|EEZ87732.1| chemotaxis protein CheV [Vibrio harveyi 1DA3] Length = 308 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 15/89 (16%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 +++L+A+D R+ + +A+ G+EVVS +G AY+K+ E + SL+++DI Sbjct: 182 RRVLIADDSTVARKQVERAITSIGFEVVSVKDGKEAYNKLLEMAQEGSIYDQISLVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFI 80 MPEMDG L RR + DLK +++ Sbjct: 242 EMPEMDGYTLTAEIRR----NADLKNLYV 266 >gi|146283877|ref|YP_001174030.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri A1501] gi|145572082|gb|ABP81188.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri A1501] Length = 1426 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D D+ + + L G EV + + GA A + + PF ++++DI MPE+DG + Sbjct: 1309 RILLVDDSPDILETMCELLQSEGAEVTTADGGARAIELAEQTPFDVIVSDIGMPEIDGHK 1368 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R + D + +TG+ + + A L KP L+ L++ V++ Sbjct: 1369 MMAIIRQQGANRDTPSIALTGYGTLRDVEKAMAAGFTLHLRKPIDLQALIDAVSQ 1423 >gi|144899604|emb|CAM76468.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 697 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++ I++ +D+ L + L + GY V C +G+ A + R++P +++TD+ MP Sbjct: 568 IDAHIMVVDDETTATETLGRYLTEMGYRVTLCGSGSEALTRFRDDPADVVITDLRMPSGG 627 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN-AKVLSKPFHLRDL 110 G +L + E DP ++ +TG N + VL KP L L Sbjct: 628 GEQLVEQLREYDPLQPIVIVTGHLGATERLAENLQDDRCAVLKKPVALGKL 678 >gi|119479321|ref|XP_001259689.1| histidine kinase G2, putative [Neosartorya fischeri NRRL 181] gi|119407843|gb|EAW17792.1| histidine kinase G2, putative [Neosartorya fischeri NRRL 181] Length = 636 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q ILL ED+ +R L + L G+ V +NG A D V+++ F +L D MP MDG Sbjct: 510 SQHILLVEDNIINQRILSRKLQGLGFSVTEASNGREALDAVKKDHFDCILMDQAMPVMDG 569 Query: 62 IELARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + EL+ + V+ +T + V+ KP+ + +L +++ + Sbjct: 570 NSATKAIRELENERSAGHTAVLGVTANVRAEQQEEMLQSGMDDVIHKPYKMDELTDKIGQ 629 Query: 117 LL 118 L+ Sbjct: 630 LV 631 >gi|90579344|ref|ZP_01235154.1| phosphoglycerate transport system transcription regulator [Vibrio angustum S14] gi|90440177|gb|EAS65358.1| phosphoglycerate transport system transcription regulator [Vibrio angustum S14] Length = 424 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 56/114 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD D+ + L +GY V + + + + +++TD+ MP +DG+EL Sbjct: 8 VLIVDDDQDVLDAYQELLELSGYNVATVQDSTKVINMLNHNWSGVIVTDMYMPGLDGMEL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + D ++ V+ +TG + + D+ L KP ++L+ + + L Sbjct: 68 LEKIQDFDNEIPVIIVTGHGDIPMAVDALKKGAIDFLQKPLQPKELIKLLEKHL 121 >gi|193782558|ref|NP_435404.4| hypothetical protein SMa0293 [Sinorhizobium meliloti 1021] gi|193073014|gb|AAK64816.2| conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 131 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD--KVREEPFSLLLTDIVMPEM-DG 61 ILLAED+ + AL +AG+ V++ +G A + K E + ++TDI E G Sbjct: 6 ILLAEDETLLLLDFEDALKEAGFMVLAVTSGKKAVEHLKAAESSIAGIVTDIRFAESPSG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD--SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ R A E+DP++ V++I+G +A PD S + ++ KPF + ++ +++LL Sbjct: 66 WDVTRIAREIDPEMPVVYISGDSA----PDWASQGVPKSIMIEKPFVMSQMIVAISQLL 120 >gi|27366527|ref|NP_762054.1| CheY-like receiver [Vibrio vulnificus CMCP6] gi|27358093|gb|AAO07044.1|AE016808_64 FOG: CheY-like receiver [Vibrio vulnificus CMCP6] Length = 327 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 14/80 (17%) Query: 2 NQKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKV-------REE--PFSLLL 51 N K ++ DD R LI+ L AGY +++C +G A+DK+ REE P S L+ Sbjct: 191 NAKTIMVVDDSAFIRSLIQETLTSAGYNIIACKDGGEAHDKLMNLIEVAREENLPLSELI 250 Query: 52 ----TDIVMPEMDGIELARR 67 TD+ MP MDG+ L +R Sbjct: 251 DAVVTDVEMPRMDGMHLVKR 270 >gi|320327197|gb|EFW83211.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 760 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F L + G++V+ + A A ++ P F ++ +DI MP M G+ Sbjct: 639 VLMVEDNQDIGTFTRPMLEQLGFQVLWVKSAAEALHELSGNPENFHVVFSDIAMPGMSGL 698 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL P + V+ TG++ + +L KP+ DL ++R ++ Sbjct: 699 ELYAEIEARYPWMPVVLTTGYSTEFATIAKDEAHRFDLLQKPYSREDLAAILHRAVS 755 >gi|307822954|ref|ZP_07653184.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307735729|gb|EFO06576.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1247 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDIVM 56 ++++L+ +D+ R L L G+ + +NG +A D++ R EP+ LLL+D+ M Sbjct: 789 DKRVLIVDDNATNRMILTHYLSNWGFTLSEADNGPAALDELEAAVLRNEPYDLLLSDMQM 848 Query: 57 PEMDGIELARRATE 70 P MDG LAR E Sbjct: 849 PGMDGFALARAIIE 862 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ ED+ ++ ++ L K + NNG A D++ + + L+ D MP MDG Sbjct: 934 SKRVLVVEDNKVNQKVILSQLAKFQLKPDLANNGQVALDQLERQAYDLVFMDCQMPIMDG 993 Query: 62 IELAR 66 E R Sbjct: 994 YEATR 998 >gi|300936942|ref|ZP_07151826.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300457948|gb|EFK21441.1| response regulator receiver domain protein [Escherichia coli MS 21-1] Length = 1197 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A K+ + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKISMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1162 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ ED ++ RR L++ L G++V G A L+ D+ MP +DG Sbjct: 953 NYRLLVVEDIEENRRLLVEILTSIGFDVREAKQGIEALSLWESWLPHLIFMDLRMPSLDG 1012 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD-SNAPKNA--KVLSKPFHLRDLVNEVNRLL 118 +R E +P + I A D N N +SKPF RD+ +++ + L Sbjct: 1013 YTATKRIRE-NPKSRETVIIALTASVFEEDRENVLTNGFNDFISKPFQQRDIFDKIAQYL 1071 Query: 119 TIK 121 ++ Sbjct: 1072 GVQ 1074 >gi|296105438|ref|YP_003615584.1| nitrogen regulation protein NR(I) [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059897|gb|ADF64635.1| nitrogen regulation protein NR(I) [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 470 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + +G+ D + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALTGAGLSCTTFESGSEVLDALTTKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum 70/3] Length = 244 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ ED+D +R F++ L ++GY+V+ +N A A D + L DI+MP MD Sbjct: 2 KRILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G EL R + + ++ ++ + ++KPF +LV V+ Sbjct: 62 GSELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVD 116 >gi|270294829|ref|ZP_06201030.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274076|gb|EFA19937.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1336 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D++D+ F+ +L + + S +NG A+ K+ E ++++D++MPEMDG EL Sbjct: 1091 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKISELMPDIIVSDVMMPEMDGNELC 1149 Query: 66 R--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + + D+ ++ +T AV + ++KPF++ L+ + +L+ + Sbjct: 1150 RWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDL 1206 >gi|262403145|ref|ZP_06079705.1| DNA-binding response regulator [Vibrio sp. RC586] gi|262350644|gb|EEY99777.1| DNA-binding response regulator [Vibrio sp. RC586] Length = 218 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD + + +AL + GY V G ++ E F+ L+ D+ +P+MDG+E Sbjct: 2 RLLLVEDDTLLGESMQEALSRQGYTVDWLERGGGVVSALKTEQFTALILDLTLPDMDGLE 61 Query: 64 LARRATELDPDLKVMFIT 81 + R+ L VM +T Sbjct: 62 VLRQIRRAGYSLPVMILT 79 >gi|297567350|ref|YP_003686322.1| response regulator receiver protein [Meiothermus silvanus DSM 9946] gi|296851799|gb|ADH64814.1| response regulator receiver protein [Meiothermus silvanus DSM 9946] Length = 133 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ R FL + L GY+V G + P L+L DI+MP M+G + Sbjct: 12 ILLVDDEQAHRHFLERGLRYEGYQVRLAAEGQEGLELALIHPPDLILLDIMMPGMNGFAV 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--------VLSKPFHLRDLVNEVNR 116 AR E + ++FI+ S+ P+ + +L KP +L DL+ ++ + Sbjct: 72 ARALHEAGLRVPIVFISA---------SDEPETCEEARLMGVPLLVKPVNLDDLLGQIAQ 122 Query: 117 LLTIK 121 L ++ Sbjct: 123 TLHVR 127 >gi|262200035|ref|YP_003271244.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262083382|gb|ACY19351.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 875 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q +LL + D R L +L KAG+ V + NGA A DKV L+++D +PEMDG Sbjct: 3 KQSLLLVDGDARSLRVLEVSLKKAGFNVTTAVNGADALDKVEMAAPDLIISDTELPEMDG 62 Query: 62 IELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ + DPD + +F+T ++ L+KP ++++++ V LL Sbjct: 63 FTFCKQ-LKADPDWAEIPFIFLTDQLSIERKIQGLELGVEDYLTKPIYIKEIITRVRLLL 121 >gi|227495253|ref|ZP_03925569.1| possible ethanolamine two-component response regulator [Actinomyces coleocanis DSM 15436] gi|226831705|gb|EEH64088.1| possible ethanolamine two-component response regulator [Actinomyces coleocanis DSM 15436] Length = 197 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 2/105 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++++++AED+ +R +++ L AG++V++ C+NG +A +K E L + D+ MP+MD Sbjct: 8 SRRVIVAEDEGLIRLDIVETLKSAGFDVIAECDNGEAAVEKALELEPDLCVFDVKMPKMD 67 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 GI A + + + V+ +T F+ L + + KPF Sbjct: 68 GITAAEKILK-ELSCAVVMLTAFSQTELVERARDAGAMAYVVKPF 111 >gi|298530356|ref|ZP_07017758.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509730|gb|EFI33634.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 784 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D D R L L G+E NGA + ++ P +L D+ MP MDG E Sbjct: 568 RILIVDDRLDNRSLLQAILEPMGFETRQAENGAHCLEIFQDWPPHAVLMDMRMPVMDGYE 627 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTI 120 R L P + FI A A D N V L KPF +L+ E+ + L + Sbjct: 628 AVERVRGL-PGGRDCFIMAVTASAFEEDRQEILNTGVDAYLRKPFQNVELLEELGKGLHL 686 Query: 121 K 121 + Sbjct: 687 Q 687 >gi|218780791|ref|YP_002432109.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218762175|gb|ACL04641.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 121 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDM-RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 + Q ++L DD+ + R + L GY ++ +G A + V+ L+L D+ MP + Sbjct: 3 LKQYVVLVVDDERVVREGCRRILEAEGYRILIAKDGEEAMEIVQSSHVDLVLADLKMPGI 62 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL P L + ITG + L ++SKPF R++V+ V L Sbjct: 63 GGLELLAWIKSNYPGLPAIIITGHGSRQLESQCEDAGALGLISKPFMAREVVDAVKSAL 121 >gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] Length = 232 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V N+G +K ++L D++MP MDG Sbjct: 3 NEKILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDG 62 Query: 62 IELARR 67 +E+ RR Sbjct: 63 LEVCRR 68 >gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 1183 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+ + + + + + GY + NG A++ ++ + LLLTD MPEMDG EL Sbjct: 928 ILVAEDNPTNQVVIRRLMERMGYAIEIVRNGLEAWEYMQIRDYGLLLTDCHMPEMDGYEL 987 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL 101 R E + + +T VAL D+ + +K L Sbjct: 988 TARVREWERET----LTRLPIVALTADALSGTASKCL 1020 >gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 946 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++R F++ L + Y V+ NG + + L+++D++MP M G++ Sbjct: 569 RILVVEDEPEIRDFVVSVL-RTSYRVMEAVNGEEGRQRALQSAPDLIVSDVMMPVMSGLQ 627 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + A R + D+ V+ +T VA + + KPF R+L+ + L ++ Sbjct: 628 MLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLRLR 687 Query: 122 N 122 + Sbjct: 688 D 688 >gi|86157752|ref|YP_464537.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774263|gb|ABC81100.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 485 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ + R L L + GYE+ +G A + + +L D+ MP MDG Sbjct: 12 KERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 I L RRA E D + +T FA+V ++ L KP Sbjct: 72 INLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPL 115 >gi|83594536|ref|YP_428288.1| response regulator receiver protein [Rhodospirillum rubrum ATCC 11170] gi|83577450|gb|ABC24001.1| response regulator receiver protein [Rhodospirillum rubrum ATCC 11170] Length = 126 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED++ + L +GY+ V N+G D R L+L DI +PE+ Sbjct: 5 MAKTILIVEDNELNMKLFNDLLQASGYDTVQTNDGRKVVDLARAHRPDLILMDIQLPEVS 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ R + D DLK + + A A+ D + ++KP + + V R Sbjct: 65 GLEVTRMLKD-DGDLKAIPVIAVTAFAMKGDEEKIREGGCDGYVAKPISVAGFLQTVARF 123 Query: 118 L 118 L Sbjct: 124 L 124 >gi|85711499|ref|ZP_01042557.1| Response regulator (CheY,wHTH domains) [Idiomarina baltica OS145] gi|85694651|gb|EAQ32591.1| Response regulator (CheY,wHTH domains) [Idiomarina baltica OS145] Length = 225 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LL +DD +M L + + E+ ++G D F L+L D+++P +D Sbjct: 1 MTHSVLLIDDDHEMSAMLTELFKREAVELTVVDDGVKGLDAALNGDFELILLDVMLPGID 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G++L +R + D V+ +T + L D P KPF+ R+L+ Sbjct: 61 GMQLLQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDYLP-------KPFNPRELIAR 113 Query: 114 VNRLL 118 V LL Sbjct: 114 VRALL 118 >gi|238790754|ref|ZP_04634514.1| Nitrogen regulation protein NR(I) [Yersinia frederiksenii ATCC 33641] gi|238721152|gb|EEQ12832.1| Nitrogen regulation protein NR(I) [Yersinia frederiksenii ATCC 33641] Length = 470 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + ++G D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCATFDSGNQVLDALATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227] Length = 880 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 758 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 817 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 818 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 860 >gi|317477826|ref|ZP_07937013.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316906025|gb|EFV27792.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1347 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D++D+ F+ +L + + S +NG A+ K+ E ++++D++MPEMDG EL Sbjct: 1102 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKISELMPDIIVSDVMMPEMDGNELC 1160 Query: 66 R--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + + D+ ++ +T AV + ++KPF++ L+ + +L+ + Sbjct: 1161 RWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDL 1217 >gi|317122922|ref|YP_004102925.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592902|gb|ADU52198.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 259 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA 84 EV + +G A ++V+ E F + L D+ MP MDGI RR L PDL V+ +T F Sbjct: 28 EVTAVADGTEAVERVQREAFDVALLDVRMPRMDGITCLRRLRALRPDLPVLMLTTFG 84 >gi|313897646|ref|ZP_07831188.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. HGF2] gi|312957598|gb|EFR39224.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. HGF2] Length = 227 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KILL EDD + RFL +L K GY+V+ NG + L+L D+ +P++D Sbjct: 1 MHDKILLIEDDASIIRFLSLSLDKNGYKVIEARNGIEGISLFMSDNPDLILLDLGLPDID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G E+ R+ ++ ++ ++ ++ ++KPFH+ +L+ V Sbjct: 61 GSEVLRQIRS-QSEVPILVVSARGQEREKVEALDLGADDYVTKPFHINELLARV 113 >gi|312129598|ref|YP_003996938.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311906144|gb|ADQ16585.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1259 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED D+R ++ + L K ++V+ NG +E L++TD++MP MDG+ Sbjct: 1013 QILVVEDHTDLRDYIAETL-KEKFQVIVAANGQEGLRLAKEHMPELIITDLMMPVMDGMS 1071 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L+R+ E + ++ +T + A L+KPF + +++ + LL Sbjct: 1072 LSRKLRENIHTSHIPIILLTAKDTTEDRIEGYELGIASYLTKPFSAQLVISRIENLL 1128 >gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1149 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ +R ++ L + GY NG A + + + + ++L D+ MPE+DG+E Sbjct: 902 RILLAEDNAVNQRVALRTLERLGYRADVVGNGLEAIEAIARQHYDVVLMDVQMPELDGLE 961 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDL 110 R+ P I A A+ D A +SKP L +L Sbjct: 962 ATRQIVARWPATARPRIIAMTANAMRGDRERCLAAGMDDYISKPVRLEEL 1011 >gi|307266826|ref|ZP_07548349.1| response regulator receiver protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918167|gb|EFN48418.1| response regulator receiver protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 123 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+ +D +R F L G+EV NG A +K + F LLL D+ MP+M Sbjct: 1 MNPSVLIVDDSAAVRGFHSSILRNIGFEVEEAANGYEALEKYLAKKFDLLLVDVNMPKMH 60 Query: 61 GIELAR--RATELDPDLKVMFIT 81 G EL R R EL + V+ I+ Sbjct: 61 GYELVRQIREQELHGFVPVIVIS 83 >gi|269964977|ref|ZP_06179142.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B] gi|269830280|gb|EEZ84505.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B] Length = 235 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L ++ + + D+ ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTIL 118 >gi|229822838|ref|ZP_04448908.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271] gi|229787651|gb|EEP23765.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271] Length = 234 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 61/110 (55%), Gaps = 3/110 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ ED+ ++ RF+ L GYE C++G + + + ++L D+++PE++G+ Sbjct: 7 HRVLIIEDEKNLARFVDLELQHEGYETAICHDGRKGLETALNQEWDVILLDLMLPELNGL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLV 111 E+ RR + D ++ +T +V ++ S + A + KPF + +L+ Sbjct: 67 EVCRRIRPI-KDTPIIIMTARDSV-IDRVSGLDQGADDYIVKPFAIEELL 114 >gi|291287872|ref|YP_003504688.1| two component, sigma54 specific, transcriptional regulator, Fis family [Denitrovibrio acetiphilus DSM 12809] gi|290885032|gb|ADD68732.1| two component, sigma54 specific, transcriptional regulator, Fis family [Denitrovibrio acetiphilus DSM 12809] Length = 442 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+ + + L + + NG + E+ + +L+TDI MP M G E+ Sbjct: 3 ILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGNEV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAP--KNAK-VLSKPFHLRDLVNEVNRLLTI 120 +A +L PD+ V+ IT + PD+ A K A L+KPF +L+N + + + I Sbjct: 63 MEKAAKLYPDMPVIIITAHGNI---PDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEI 118 >gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 250 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 7/124 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDI 54 +IL+ ED+D +R ++ AL + GYE+ S +G +A + ++ EE F LL+ D+ Sbjct: 18 THRILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDL 77 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++P+++G+++ R + ++ ++ + L+KPF +R+LV Sbjct: 78 MLPQVNGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 NRLL 118 LL Sbjct: 138 RALL 141 >gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS and HAMP domains [Synechococcus sp. PCC 7002] Length = 1280 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 8/117 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ + L + GY V NG +++ + + ++L D+ MP MDG+E Sbjct: 1144 RILLAEDNIVNQKVALNILARLGYGVEVATNGLEVLSRLQSDNYDVILMDVQMPAMDGLE 1203 Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVN 112 R+ + D K +I A A+ D +A + LSKP ++ L++ Sbjct: 1204 ATRQIRQRDARSPQSQGKRPWIIAMTANAMQGDRQVCLDAGMDDYLSKPIQVKKLLH 1260 >gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 271 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +G++A RE ++ D+++P+MDG+ Sbjct: 45 RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 104 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R P++ V+F+T AV ++KPF L ++V + LL Sbjct: 105 VLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLL 159 >gi|157373266|ref|YP_001471866.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157315640|gb|ABV34738.1| two component, sigma54 specific, transcriptional regulator, fis family [Shewanella sediminis HAW-EB3] Length = 477 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 +L+ +D+ MR FL KAL K + +V + +++R F LL+ DI +P GIE Sbjct: 34 VLIVDDEPGMRSFLKKALSKK-FALVETASSVEDAEQLRSRCHFDLLVVDIRLPGRSGIE 92 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + ++F+TG+A + + + + + KPFHL ++ V+R + Sbjct: 93 WHEALNDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCI 147 >gi|197117980|ref|YP_002138407.1| chemotaxis protein CheY [Geobacter bemidjiensis Bem] gi|253701227|ref|YP_003022416.1| response regulator receiver protein [Geobacter sp. M21] gi|197087340|gb|ACH38611.1| chemotaxis protein CheY [Geobacter bemidjiensis Bem] gi|251776077|gb|ACT18658.1| response regulator receiver protein [Geobacter sp. M21] Length = 121 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + I+ A+D +R+ + L + GY+VV +G A K+ +L+TD+ MP +D Sbjct: 1 MAKVIMTADDSASVRQMVTFTLKQGGYDVVEAVDGKDALQKLSSTKVDMLITDLNMPNLD 60 Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI L + A L P K ++ +T + + + A + KPF L+ V ++ Sbjct: 61 GIGLIKGARAL-PSCKFIPIVMLTTESQDSKKQEGKAAGATGWIVKPFKPEQLMAVVKKV 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|124006367|ref|ZP_01691201.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla marina ATCC 23134] gi|123988024|gb|EAY27695.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla marina ATCC 23134] Length = 490 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D + +++ L + GY+ + +G SA ++V L+L D++MP +DG E Sbjct: 11 KILVVDDTPANIKLMVEHLSQEGYKTLVAEDGESAIEQVAFVKPDLILLDVMMPGIDGFE 70 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R E D D+ ++F+T + + + ++KP +++++ V+ LTI+ Sbjct: 71 TCHRLKEDDSTKDIPIIFMTALSDTENKVKAFSMGAVDYVTKPIQHKEVLSRVSAHLTIR 130 >gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 229 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++LL +D+ +R + L ++G+ V +N +D +++ L+++D++MP++D Sbjct: 1 MSAQLLLVDDEPGLREAVSDYLQESGFSVQVASNAREGWDWMQQNTPDLVISDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G + ++ E DP + + + A + D A V L KPF +LV V L Sbjct: 61 GYQFLKQLRE-DPRFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENL 119 Query: 118 LT 119 L+ Sbjct: 120 LS 121 >gi|119476938|ref|ZP_01617219.1| two-component response regulator PilR [marine gamma proteobacterium HTCC2143] gi|119449745|gb|EAW30982.1| two-component response regulator PilR [marine gamma proteobacterium HTCC2143] Length = 454 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D+ D+R L + + G + S + +SA ++ + L LTD+ +P+ DG Sbjct: 3 NNRVLIIDDEPDIRELLEITINRMGLDTDSAESVSSALSYLKTTDYGLCLTDMKLPDGDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNRL 117 +E+ + + P + V +T F + + D+ ++KP + LR L++ +L Sbjct: 63 LEIIKHIQQHCPHIPVAMVTAFGSTEIAIDALKAGAFDFVNKPINIDRLRQLIDAALKL 121 >gi|255745468|ref|ZP_05419416.1| response regulator [Vibrio cholera CIRS 101] gi|255736543|gb|EET91940.1| response regulator [Vibrio cholera CIRS 101] Length = 363 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 22 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 81 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 82 VEEVSSSYPSLPLVVVSATEEMA 104 >gi|51244497|ref|YP_064381.1| Ntr family protein two-component system response regulator [Desulfotalea psychrophila LSv54] gi|50875534|emb|CAG35374.1| related to two-component system response regulator (Ntr family) [Desulfotalea psychrophila LSv54] Length = 374 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 11/114 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+A+DD +R + + LG GYEV + G A KV ++ F +++ DI MP+++G E Sbjct: 13 KVLIADDDAIVRETISEILGVYGYEVELASCGGEAISKV-DDSFDVIVLDINMPDLNGFE 71 Query: 64 LARRATELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 +L ++ ++F+TG +A A+N + L+KP DL N Sbjct: 72 TMDAIEKLGFNIPILFLTGAGSMDYAVKAINMGA-----YDFLTKPIKDLDLFN 120 >gi|18311069|ref|NP_563003.1| DNA-binding response regulator, AraC family [Clostridium perfringens str. 13] gi|110800482|ref|YP_696767.1| AraC family DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168205895|ref|ZP_02631900.1| DNA-binding response regulator, AraC family [Clostridium perfringens E str. JGS1987] gi|168208790|ref|ZP_02634415.1| DNA-binding response regulator, AraC family [Clostridium perfringens B str. ATCC 3626] gi|168215715|ref|ZP_02641340.1| DNA-binding response regulator, AraC family [Clostridium perfringens NCTC 8239] gi|169343706|ref|ZP_02864705.1| DNA-binding response regulator, AraC family [Clostridium perfringens C str. JGS1495] gi|182624050|ref|ZP_02951838.1| DNA-binding response regulator, AraC family [Clostridium perfringens D str. JGS1721] gi|18145751|dbj|BAB81793.1| two-component response regulator [Clostridium perfringens str. 13] gi|110675129|gb|ABG84116.1| DNA-binding response regulator, AraC family [Clostridium perfringens ATCC 13124] gi|169298266|gb|EDS80356.1| DNA-binding response regulator, AraC family [Clostridium perfringens C str. JGS1495] gi|170662571|gb|EDT15254.1| DNA-binding response regulator, AraC family [Clostridium perfringens E str. JGS1987] gi|170713036|gb|EDT25218.1| DNA-binding response regulator, AraC family [Clostridium perfringens B str. ATCC 3626] gi|177910943|gb|EDT73297.1| DNA-binding response regulator, AraC family [Clostridium perfringens D str. JGS1721] gi|182382343|gb|EDT79822.1| DNA-binding response regulator, AraC family [Clostridium perfringens NCTC 8239] Length = 507 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K++LA+D++ + + L I + G E+V+ +NG A DK +E P +++TDI MP++ Sbjct: 3 KVMLADDENLILQGLENIIEWEELGLEIVNKASNGQEAIDKFKENPVDIVVTDINMPQVT 62 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL + +++ D+K + ++G+ Sbjct: 63 GLELLKELKKINSDVKFIILSGY 85 >gi|89092220|ref|ZP_01165174.1| two-component system sensor histidine kinase-response regulator hybrid protein PilL [Oceanospirillum sp. MED92] gi|89083308|gb|EAR62526.1| two-component system sensor histidine kinase-response regulator hybrid protein PilL [Oceanospirillum sp. MED92] Length = 1295 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D R+ L L GYEV++ +G A +++R+ L+L+D+ MP M GIE Sbjct: 1174 RLLVVDDSLSARKSLEILLKDTGYEVMTAIDGLDALNQIRKRQPDLILSDMEMPRMGGIE 1233 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LA E D+ V+ IT + ++ A L+KP+ L++ V+ LL Sbjct: 1234 LATVLNNREETADIPVIMITSRSTEKHRNEAVNAGVAAYLTKPWTENQLLDLVDNLL 1290 >gi|116748099|ref|YP_844786.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] gi|116697163|gb|ABK16351.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] Length = 122 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 K+LL +D+++ L + L G +V + G A +R+E L+L D++MP + G Sbjct: 3 QWKLLLVDDEEEFASTLAERLRLRGVDVRTVFRGEDALPAIRQERPDLVLLDVLMPGVGG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +EL RR P L V+ +TG A A L KP + +L+ + +L Sbjct: 63 MELLRRLRIECPSLPVILLTGQGISEEELRIGALHGAVFLMKPLSIDELMKTIGGIL 119 >gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] Length = 223 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ + L + GY+ ++ +NG A + + E L++TDI+MP MDG + Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + ++ ++ +T + + + KP L++L + LL Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117 >gi|332827584|gb|EGK00330.1| hypothetical protein HMPREF9455_03469 [Dysgonomonas gadei ATCC BAA-286] Length = 1352 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ ED+DD+R ++ +L + Y+V + +NG + ++++DI+MPEMDG Sbjct: 1098 QVILVIEDNDDIRDYIHNSLSEQ-YKVYTASNGKKGLKEAYTHIPDIIISDIMMPEMDGF 1156 Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL+R E + ++ +T ++ + ++KPF L + V LL Sbjct: 1157 ELSRILKEDVRTSHIPIILLTAKDSIQDRTEGYNIGVESYITKPFSASLLHSRVTNLL 1214 >gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671] Length = 880 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 758 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 817 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 818 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 860 >gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P G Sbjct: 3 GRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWMLPGTSG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 IELARR EL D+ ++ +T A + N + +V ++KPF R+LV + Sbjct: 63 IELARRLKRDELTGDIPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVARL 117 Query: 115 NRLL 118 +L Sbjct: 118 KAVL 121 >gi|330880793|gb|EGH14942.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 763 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F L + G++V+ + A A ++ P F ++ +DI MP M G+ Sbjct: 642 VLMVEDNQDIGTFTRPMLEQLGFQVLWVKSAAEALHELSGNPENFHVVFSDIAMPGMSGL 701 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL P + V+ TG++ + +L KP+ DL ++R ++ Sbjct: 702 ELYAEIEARYPWMPVVLTTGYSTEFATIAKDEAHRFDLLQKPYSREDLAAILHRAVS 758 >gi|320325515|gb|EFW81577.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 763 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F L + G++V+ + A A ++ P F ++ +DI MP M G+ Sbjct: 642 VLMVEDNQDIGTFTRPMLEQLGFQVLWVKSAAEALHELSGNPENFHVVFSDIAMPGMSGL 701 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL P + V+ TG++ + +L KP+ DL ++R ++ Sbjct: 702 ELYAEIEARYPWMPVVLTTGYSTEFATIAKDEAHRFDLLQKPYSREDLAAILHRAVS 758 >gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 223 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ + L + GY+ ++ +NG A + + E L++TDI+MP MDG + Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + ++ ++ +T + + + KP L++L + LL Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117 >gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+DD +R + L K GY V N+G A + + + L + D++MP +G EL Sbjct: 4 ILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVMMPNKNGWEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + EL DL ++ +T + KPF +L+ V LL Sbjct: 64 CKEIREL-YDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALL 116 >gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 85-1] Length = 933 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|322435322|ref|YP_004217534.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321163049|gb|ADW68754.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 239 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 ++Q I + EDD D+ R + L AG+ V +P SL L DI++P D Sbjct: 6 LSQTIFVLEDDADISRLVQYHLESAGFTVRPYAAIQQIVSDAERQPPSLFLLDIMVPGGD 65 Query: 61 GIELARRATELDPDLKV---MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G++L RR L+P L V +F+T AA ++KPF R+LV V + Sbjct: 66 GLDLCRR-LRLNPTLSVVPIIFLTARAAENDRVQGLELGADDYITKPFATRELVARVKAV 124 Query: 118 L 118 L Sbjct: 125 L 125 >gi|299135154|ref|ZP_07028345.1| response regulator receiver protein [Afipia sp. 1NLS2] gi|298590131|gb|EFI50335.1| response regulator receiver protein [Afipia sp. 1NLS2] Length = 121 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED++ + L GY+ V +NG A RE L+L DI +PE+ Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTVGTSNGREALRLAREHRPDLILMDIQLPEVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ R + D +L+ + A A+ D + LSKP + + V R Sbjct: 61 GLEVTRWIKD-DAELRATPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRF 119 Query: 118 L 118 + Sbjct: 120 V 120 >gi|295107699|emb|CBL05242.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 11/123 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + ++L Y V C++G A D + E F L++ D+ +P +DG+ Sbjct: 8 RILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPRIDGMT 67 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D + KV+ ++ V L+ +N L+KPFHL +L + R L Sbjct: 68 VLKALRKTDRETKVLILSARGKVFDKVTGLDAGAN-----DYLTKPFHLDELAARI-RSL 121 Query: 119 TIK 121 T++ Sbjct: 122 TLR 124 >gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 232 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V N+G +K ++L D++MP MDG Sbjct: 3 NEKILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDG 62 Query: 62 IELARR 67 +E+ RR Sbjct: 63 LEVCRR 68 >gi|290980414|ref|XP_002672927.1| predicted protein [Naegleria gruberi] gi|284086507|gb|EFC40183.1| predicted protein [Naegleria gruberi] Length = 1334 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 13/123 (10%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K L+ ED+D R+ +IK L GYE V SC NG + +K ++ + ++L D++MP M+G Sbjct: 1211 KKALVVEDNDINRKVIIKLLKLIGYENVDSCENGLDSVEKCKQSKYEVILMDLLMPIMNG 1270 Query: 62 ----IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA--KVLSKPFHLRDLVNEVN 115 +++ + P I G A + VL KP L L NE+ Sbjct: 1271 KDASVQIRQGQNSKTP------IIGITANIWETYETLKEFGFDSVLYKPIMLNKLKNEIE 1324 Query: 116 RLL 118 ++L Sbjct: 1325 KVL 1327 >gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1100 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ R +++ L K G+ VV+ +G A ++VR F ++L DI MP MDG+ Sbjct: 976 VLLVEDEPVNRISVLRLLEKLGHAVVTAEDGFQALERVRSGTFDIVLMDIQMPGMDGMAA 1035 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 R + D + ++ I A A+ D +A + L+KP DLV ++ L+ Sbjct: 1036 TRLIRDDDSLGNKALVPIIALTAHAMKGDREKFLDAGMDDYLAKPVDFTDLVRVLSGLV 1094 >gi|268609986|ref|ZP_06143713.1| regulatory protein VanR [Ruminococcus flavefaciens FD-1] Length = 228 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ IL+ +DD D+R L L GY + C+N A D + + L+L D++MP+MDG Sbjct: 3 DEYILVVDDDSDIRNLLGIYLENEGYSFIKCDNALKALDVLEKSKVVLILLDVMMPQMDG 62 Query: 62 I 62 I Sbjct: 63 I 63 >gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451] gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451] Length = 236 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 41/66 (62%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LGKAG+EV+ NGA + + + L++ DI+MP DG Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDG 63 Query: 62 IELARR 67 L ++ Sbjct: 64 FTLCQK 69 >gi|315498979|ref|YP_004087783.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315416991|gb|ADU13632.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 224 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 58/119 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD + + K L + G+E V ++G + +RE F +++ D +MP +DG+ Sbjct: 3 KVLIVEDDVEAALTMQKGLSEQGFESVVTHDGEAGLKALREGEFDVVVLDRMMPGLDGVS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + A D+ V+F++ + L KP+ L +LV + LL K+ Sbjct: 63 MLEIARSEGMDVPVLFLSALGELEDRVYGLKAGADDYLVKPYALVELVARLEALLRRKD 121 >gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 215 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E+V NG A ++ E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEALTFIQTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRIKQYDETIKILILSSFS 86 >gi|223558000|gb|ACM91006.1| C4-dicarboxylate transport transcriptional regulatory protein [uncultured bacterium URE4] Length = 382 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L + L Y+V + NGA A + +E + + DI MP MDG E Sbjct: 2 KILIVDDERSIRNSLKEILEMEEYQVDTAENGADACEMAEKEKYDAIFCDIKMPGMDGTE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLTIKN 122 + ++ + V+ I+G A + D + KP L NR L+TIKN Sbjct: 62 VLQKLIADGVETPVVMISGHADIDTAVDCIKKGAFDFIGKPLDL-------NRILITIKN 114 >gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 227 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G + Sbjct: 3 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + L KPF +L+ V LL Sbjct: 63 IIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 117 >gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM 12614] gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM 12614] Length = 237 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD D+ R L+ AL +AGY V S +G + EP+ ++ D+ +P +DG+ Sbjct: 17 RILVVEDDTDLNRQLVAALEEAGYVVDSATDGEDGHFLGDTEPYDAVVLDLGLPSLDGLS 76 Query: 64 LARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + V+ +T ++ D+ A ++KPFH+ +++ V L+ Sbjct: 77 VLENWRRDGRTMPVLILTARDRWSDKVAGIDAGAD---DYVAKPFHMEEVLARVRALV 131 >gi|219850592|ref|YP_002465025.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544851|gb|ACL26589.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 913 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED++ ++ + L G+ V NG A V+ F ++L D+ MPEMDG E+ Sbjct: 672 ILVAEDNEINQQVALHLLRVLGHHVTVVANGREALHSVQHGQFDVVLMDLQMPEMDGEEV 731 Query: 65 ARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R+ L + +++ +T +A + A L+KP L+DL Sbjct: 732 TRQIRALGNRIRQPRIIALTAYAFAGIRERCLAAGMDGFLNKPVRLQDL 780 >gi|78047264|ref|YP_363439.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035694|emb|CAJ23385.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 690 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 Q +L+ EDD+ +R + + L + GY+ + +A + P LL+TD+ +P ++ Sbjct: 570 QHVLVVEDDEQVRLLVTELLSELGYQADVVADADAAL-PILASPRRIDLLVTDVGLPGLN 628 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 629 GRQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHDVL 686 >gi|119716281|ref|YP_923246.1| response regulator receiver [Nocardioides sp. JS614] gi|119536942|gb|ABL81559.1| response regulator receiver [Nocardioides sp. JS614] Length = 250 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 11/120 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + L+ EDD+D+R ++ L G+EV + +G VR+ L+ D+ +P +D Sbjct: 12 LGRVALVVEDDEDIRALIVYTLETQGFEVFAVGSGLEGVAAVRDRQPDLITLDLGLPGID 71 Query: 61 GIELARRATELDPDLKVMFITGF-----AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 GIE RR E+ D V+ IT + L ++ ++KPF R+L VN Sbjct: 72 GIEACRRIREIS-DAYVVMITARDDEIDRLLGLETGAD-----DFIAKPFSARELKARVN 125 >gi|323497160|ref|ZP_08102180.1| sensor histidine kinase/response regulator LuxN [Vibrio sinaloensis DSM 21326] gi|323317735|gb|EGA70726.1| sensor histidine kinase/response regulator LuxN [Vibrio sinaloensis DSM 21326] Length = 689 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + I++A+D+ +R + L + G+EV+ NG DK+++ P L++ DI MP ++G Sbjct: 571 KTIMIADDNHSLRAYTSILLEQQGFEVIQVQNGQEVLDKLQQSPVDLVIMDIEMPYLNGF 630 Query: 63 ELA 65 E A Sbjct: 631 EAA 633 >gi|320158364|ref|YP_004190742.1| chemotaxis protein CheV [Vibrio vulnificus MO6-24/O] gi|319933676|gb|ADV88539.1| chemotaxis protein CheV [Vibrio vulnificus MO6-24/O] Length = 327 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 14/80 (17%) Query: 2 NQKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKV-------REE--PFSLLL 51 N K ++ DD R LI+ L AGY +++C +G A+DK+ REE P S L+ Sbjct: 191 NAKTIMVVDDSAFIRSLIQETLTSAGYNIIACKDGGEAHDKLMNLIEVAREENLPLSELI 250 Query: 52 ----TDIVMPEMDGIELARR 67 TD+ MP MDG+ L +R Sbjct: 251 DAVVTDVEMPRMDGMHLVKR 270 >gi|312961184|ref|ZP_07775689.1| chemotaxis protein CheY [Pseudomonas fluorescens WH6] gi|311284842|gb|EFQ63418.1| chemotaxis protein CheY [Pseudomonas fluorescens WH6] Length = 122 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D +R+ + AL AGY+V+ +G A K+ + L+++D+ MP MD Sbjct: 1 MAKNVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLNGQKVHLIISDVNMPNMD 60 Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI + +L ++ +T + + + A + KPF ++ V++L+ Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 >gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 211 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKAL-GKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPE 58 M K+LL ED +RR L+ L + +E++ NG A V+ E ++L D+ MP+ Sbjct: 1 MKIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALTFVQTERPDVVLMDLSMPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFA 84 MDGIE +R + D +K++ ++ F+ Sbjct: 61 MDGIEATKRIKQYDETIKILMLSSFS 86 >gi|237808149|ref|YP_002892589.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187] gi|237500410|gb|ACQ93003.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187] Length = 675 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED + L K G ++ N+G + +KVR+ F ++L D+ MP MDG+E Sbjct: 424 VLLVEDSLTNQMVATAMLEKTGCQITIANDGYESLEKVRQAEFDVVLMDVSMPGMDGLEA 483 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110 RR + + I A A D A A + LSKP L Sbjct: 484 TRRIRAMGGRYLTLPILAMTAHAFAHDREACLEAGMNDYLSKPLQREQL 532 >gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 243 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY VV+ +G A + REE L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVA 87 + + + + D+ ++ +T VA Sbjct: 65 YGVCQELRK-ESDVPIIMLTALGDVA 89 >gi|218778386|ref|YP_002429704.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759770|gb|ACL02236.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 779 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 +++I+L +D++ + + K L + GYEV S N A + R LL+TD+ MP M Sbjct: 657 HERIMLVDDEEPVVNTVGKMLSRLGYEVCSFTNSLEALEYFRSNSSGIDLLMTDMTMPHM 716 Query: 60 DGIELARRATELDPDLKVMFITGF 83 G L + + + PD + TGF Sbjct: 717 TGDALIKEVSAISPDTPTVICTGF 740 >gi|149204359|ref|ZP_01881326.1| response regulator receiver modulated serine phosphatase [Roseovarius sp. TM1035] gi|149142244|gb|EDM30291.1| response regulator receiver modulated serine phosphatase [Roseovarius sp. TM1035] Length = 428 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 11/131 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ +D RR L +L + G+EV +G A R++P L+++D +MP + G+ Sbjct: 22 QRVLVVDDSRLQRRILTASLQRWGFEVQEAESGEEALRLCRDQPPDLVMSDWMMPGLSGL 81 Query: 63 ELARRATELDPDLKVMFI-----TGFAAVALNPDSNA------PKNAKVLSKPFHLRDLV 111 E R+ +L + FI + VAL D+ A P NA L + Sbjct: 82 EFCRKFRDLQQESYGYFILLTSKSDKDEVALGLDAGADDFLTKPVNAAELRARISAGARI 141 Query: 112 NEVNRLLTIKN 122 + R LT KN Sbjct: 142 LRMQRELTEKN 152 >gi|119484444|ref|ZP_01619061.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119457918|gb|EAW39041.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 437 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L ++L AGYEV NG +A + +P L+L DI MP MDG E Sbjct: 11 ILIVDDSPVHLKVLSESLVNAGYEVAVAINGETALKQALYDPPDLILLDIQMPGMDGFET 70 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +A + ++F+T A + L+KPF +++ + L IK+ Sbjct: 71 CHQLKAHPSTQAVPIIFMTALADTSSKIKGLKAGAVDYLTKPFQQEEVLARIKVHLQIKD 130 >gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius UCC118] gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius UCC118] gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741] Length = 233 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 14/115 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ + L L KAGYEV + NNG A D+ + ++ D+++P +DGIE Sbjct: 3 KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 + +R + ++ +T + L D L+KPF R++V Sbjct: 63 ITKRIRQEKITTYILILTAKDDEYDKIIGLELGADD-------YLTKPFSPREIV 110 >gi|15598388|ref|NP_251882.1| two-component response regulator GltR [Pseudomonas aeruginosa PAO1] gi|107102722|ref|ZP_01366640.1| hypothetical protein PaerPA_01003788 [Pseudomonas aeruginosa PACS2] gi|116051181|ref|YP_789988.1| two-component response regulator GltR [Pseudomonas aeruginosa UCBPP-PA14] gi|218890616|ref|YP_002439480.1| two-component response regulator GltR [Pseudomonas aeruginosa LESB58] gi|254236153|ref|ZP_04929476.1| two-component response regulator GltR [Pseudomonas aeruginosa C3719] gi|254241879|ref|ZP_04935201.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192] gi|296388322|ref|ZP_06877797.1| two-component response regulator GltR [Pseudomonas aeruginosa PAb1] gi|313108507|ref|ZP_07794508.1| two-component response regulator GltR [Pseudomonas aeruginosa 39016] gi|9949311|gb|AAG06580.1|AE004743_3 two-component response regulator GltR [Pseudomonas aeruginosa PAO1] gi|1621045|gb|AAC44475.1| GltR [Pseudomonas aeruginosa PAO1] gi|115586402|gb|ABJ12417.1| two-component response regulator GltR [Pseudomonas aeruginosa UCBPP-PA14] gi|126168084|gb|EAZ53595.1| two-component response regulator GltR [Pseudomonas aeruginosa C3719] gi|126195257|gb|EAZ59320.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192] gi|218770839|emb|CAW26604.1| two-component response regulator GltR [Pseudomonas aeruginosa LESB58] gi|310881010|gb|EFQ39604.1| two-component response regulator GltR [Pseudomonas aeruginosa 39016] Length = 242 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ILL +DD ++R L L +AG++V S + GA + EE SL + D+++P+ DG Sbjct: 5 GRSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDEDG 64 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R R+ + + ++ +T + A L KPF R+L+ + LL Sbjct: 65 FSLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALL 123 >gi|330984940|gb|EGH83043.1| two-component sensor histidine kinase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 787 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 664 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLITNGQAFDLLITDHLMPGINGTDL 723 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 724 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 764 >gi|327402547|ref|YP_004343385.1| Fis family two component sigma-54-specific transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327318055|gb|AEA42547.1| two component, sigma54 specific, transcriptional regulator, Fis family [Fluviicola taffensis DSM 16823] Length = 464 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 50/85 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D++ R L + + GYEV + S K+ ++ +++L D+ +P+ +GI Sbjct: 21 KQLLIIDDEEKHRSLLARIIRSEGYEVFEAGDCESGLKKLAQKAINVILCDVKLPDGNGI 80 Query: 63 ELARRATELDPDLKVMFITGFAAVA 87 +L + E PD++++ +T F ++ Sbjct: 81 DLVPKIKERFPDVEIILLTAFGNIS 105 >gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 670 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 + Q++L+ ED++ + ++ L + G E NG A D+ E + F ++L D+ MP M Sbjct: 540 VGQRVLVVEDNELNQYVILNMLARFGVETCVAENGRDAVDRYAEDQDFDVILMDVQMPVM 599 Query: 60 DGIELARRATELD-PDLKVMFITGFAAVALNPDSN----APKNAKVLSKPFHLRDLVNEV 114 +G + RR E P + + I A A+ D A NA L+KP +R+LV + Sbjct: 600 NGYDATRRIRESGLPRCRSVPILAMTAHAMRGDEERSFAAGMNAH-LTKPIDVRELVFSL 658 Query: 115 NRL 117 +R Sbjct: 659 SRW 661 >gi|313681752|ref|YP_004059490.1| histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313154612|gb|ADR33290.1| histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 638 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+AED+ + L L + + VV+ NG A D +E F L+L DI MP MDG Sbjct: 505 NIKILVAEDNLINLKLLETILHQEHFRVVAVENGQKAVDAYLKEHFDLVLMDIDMPVMDG 564 Query: 62 IELARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + R E+D + V+ +T A + A L+KP L+ ++R Sbjct: 565 LTANRLIKEIDKRDGRGFVPVIALTAHALIGDRERIVAAGLDAHLAKPIDKHFLIQTMDR 624 Query: 117 LLTI 120 L I Sbjct: 625 YLKI 628 >gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c] gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 257 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R+ L ++L GYEV + +G +A + + E + + D++MP MDG+E Sbjct: 12 RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRERPDIAVLDVMMPRMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R+ DL V+ +T +A L KPF L +L Sbjct: 72 ACRQLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 118 >gi|304408333|ref|ZP_07389980.1| two component transcriptional regulator, AraC family [Paenibacillus curdlanolyticus YK9] gi|304342622|gb|EFM08469.1| two component transcriptional regulator, AraC family [Paenibacillus curdlanolyticus YK9] Length = 549 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 34 NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSN 93 +GA A D + P +++TDI MP M GIEL P +K + ++G+A A + Sbjct: 36 SGAQALDILETNPIDIVITDIRMPGMSGIELITIIHSRWPHIKSILLSGYADFAYAKQAI 95 Query: 94 APKNAKVLSKPFHLRDLVNEVNRL 117 A ++ L KP DL++ V R+ Sbjct: 96 AQQSFDYLLKPVSDEDLIDSVTRV 119 >gi|298674809|ref|YP_003726559.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] gi|298287797|gb|ADI73763.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] Length = 118 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+++ +D MR + L K G+EVV+ ++G + +K + L+ D+VMP M+G Sbjct: 3 KVMIVDDAAFMRMVIKDILTKNGHEVVAEASDGTESVEKYPDLKPDLVFMDVVMPTMEGT 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ ++DP+ KV+ + ++ ++ + KPF ++ VNR++ Sbjct: 63 EALKKIMDMDPEAKVIMCSSIGQQSVVKEAIDIGAQDFIVKPFDADKVMEVVNRVV 118 >gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 237 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LLAEDD +R L +AL GYEV++ +G A + P +L+ D++MP +DG+++ Sbjct: 1 MLLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVMMPGIDGLQV 60 Query: 65 AR 66 R Sbjct: 61 CR 62 >gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302] gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302] Length = 949 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 276 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + R + L +AGYEV + G +A R +++ D+ +P +DGIE Sbjct: 54 RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 113 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + V+ +T + A ++KPF +R+LV V ++ Sbjct: 114 VCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVM 167 >gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] Length = 236 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 41/66 (62%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LGKAG+EV+ NGA + + + L++ DI+MP DG Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDG 63 Query: 62 IELARR 67 L ++ Sbjct: 64 FTLCQK 69 >gi|257140136|ref|ZP_05588398.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 257 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G++ Sbjct: 12 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGLD 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 72 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 125 >gi|212703053|ref|ZP_03311181.1| hypothetical protein DESPIG_01091 [Desulfovibrio piger ATCC 29098] gi|212673641|gb|EEB34124.1| hypothetical protein DESPIG_01091 [Desulfovibrio piger ATCC 29098] Length = 126 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 6/112 (5%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EP---FSLLLTDIVMPEM 59 L +D+ + + + K L + G +V+ +G SA D V E +P F +++ D+ MP M Sbjct: 4 LFVDDEVEFLQLMEKRLSRRGMTIVTAPDGQSALDIVTEAMKQPETMFQVVVMDVRMPGM 63 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 DG+E R ++ P L V+ +TG A++ + + KP + +L+ Sbjct: 64 DGLETLRHMKKIAPKLPVLLLTGHASLGVAVQGMDLGAYDYMLKPVAINELI 115 >gi|254411501|ref|ZP_05025278.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182002|gb|EDX76989.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 947 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D + R +I L G+EV+ NNG D L++TD++MP MDG Sbjct: 728 SHTILVVDDRWENRSVIINLLEPLGFEVIEANNGKEGLDIAMTATPDLIITDLIMPIMDG 787 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ R + LK M I +A D S L+KP + +L+ + L Sbjct: 788 FEMMRHIRQ-SKTLKNMLIVVSSASVFEMDRHHSLVAGGNDFLAKPVQIDELLQTLQHHL 846 >gi|253700717|ref|YP_003021906.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M21] gi|251775567|gb|ACT18148.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M21] Length = 953 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 5 ILLAEDDDDMRRFLIKALG--KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +LL ED+ + R L + LG G ++ + +NG S + R +++TDI MP+M+GI Sbjct: 13 LLLVEDEVEARDMLERMLGLNYQGVKIYTADNGVSGLEVFRRLRPEIVVTDINMPQMNGI 72 Query: 63 ELARRATELDPDLKVMFITGFAAVA 87 +AR EL+P+ ++ +T + + Sbjct: 73 AMARGIKELEPEATIVAVTAHSETS 97 >gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 270 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +G++A RE ++ D+++P+MDG+ Sbjct: 44 RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 103 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R P++ V+F+T AV ++KPF L ++V + LL Sbjct: 104 VLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLL 158 >gi|170683263|ref|YP_001744563.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli SMS-3-5] gi|170520981|gb|ACB19159.1| sensor histidine kinase/response regulator EvgS [Escherichia coli SMS-3-5] Length = 1127 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A K+ + + LL+TD+ MP MDG EL Sbjct: 891 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKISMQHYDLLITDVNMPNMDGFEL 950 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 951 TRKLREQNSSLPIWGLTANA 970 >gi|168212875|ref|ZP_02638500.1| DNA-binding response regulator, AraC family [Clostridium perfringens CPE str. F4969] gi|170715479|gb|EDT27661.1| DNA-binding response regulator, AraC family [Clostridium perfringens CPE str. F4969] Length = 507 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K++LA+D++ + + L I + G E+V+ +NG A DK +E P +++TDI MP++ Sbjct: 3 KVMLADDENLILQGLENIIEWEELGLEIVNKASNGQEAIDKFKENPVDIVVTDINMPQVT 62 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL + +++ D+K + ++G+ Sbjct: 63 GLELLKELKKINSDVKFIILSGY 85 >gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SMS-3-5] gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli SMS-3-5] Length = 949 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|115375536|ref|ZP_01462795.1| CheA4 [Stigmatella aurantiaca DW4/3-1] gi|310818144|ref|YP_003950502.1| CheA signal transduction histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115367491|gb|EAU66467.1| CheA4 [Stigmatella aurantiaca DW4/3-1] gi|309391216|gb|ADO68675.1| CheA signal transduction histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 710 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q+ILLA+D R L AGYEV+ C +GA A+++++ L++D+ MP MD Sbjct: 590 VRQRILLADDSPTTRALEQSLLEAAGYEVLPCADGAEAWERLQNVGADALVSDVEMPRMD 649 Query: 61 GIEL--ARRATELDPDLKVMFITG 82 G L A R + L V+ +T Sbjct: 650 GFALTEAVRTSPRFSRLPVVLVTA 673 >gi|115380274|ref|ZP_01467289.1| PknL [Stigmatella aurantiaca DW4/3-1] gi|310821814|ref|YP_003954172.1| serine/threonine protein kinase/response regulator/adenylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|115362715|gb|EAU61935.1| PknL [Stigmatella aurantiaca DW4/3-1] gi|309394886|gb|ADO72345.1| Serine/threonine protein kinase/response regulator/adenylate cyclase [Stigmatella aurantiaca DW4/3-1] Length = 665 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKA----GYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58 +IL+ +D+ D+ L +A + Y+ ++G +A +K+R+ P +++TDI MP Sbjct: 289 RILVVDDEPDVEMLLKQAFRRQIRDNVYQFFFASDGENALEKLRQYPDIEVVVTDINMPR 348 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG+ L R +E P KV+ ++ ++ + + L KP +DL +N+ L Sbjct: 349 MDGLALLSRVSEAYPLAKVIIVSAYSDMTNLRMAMNRGAYDFLVKPLDFQDLETTLNKTL 408 >gi|29349086|ref|NP_812589.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253571250|ref|ZP_04848657.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|29340993|gb|AAO78783.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] gi|251839203|gb|EES67287.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1381 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+ ++ + K L + Y V + NG + +E L+++D++MPEMDGIE Sbjct: 1129 ILLVEDNGELLHLMTKLLSRE-YNVFTAQNGKEGIAVLEKEDVDLIVSDVMMPEMDGIEF 1187 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLLT 119 + + L++ I A N + + + ++ +SKPF+L L + LL Sbjct: 1188 CKY---VKGHLEMSHIPMILLTAKNKEEDRAEAYEIGADAFISKPFNLTVLHARIRNLLK 1244 Query: 120 IK 121 K Sbjct: 1245 YK 1246 >gi|39935204|ref|NP_947480.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39649055|emb|CAE27576.1| sensor histidine kinase with a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 707 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 + +LL ED D+ G+ G+ VV N +A + + R L+ +DIVMP M G Sbjct: 585 KTLLLVEDHPDVASVAADYAGQCGFTVVPANCAEAAVEVLNRRRDIDLVFSDIVMPGMSG 644 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +ELAR E P+ V+ +G++ + S + +L KP+ L ++ Sbjct: 645 LELARLIREHHPETPVVLASGYSDRSA---SALSEGFALLQKPYTLDEM 690 >gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71] Length = 933 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74] Length = 933 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|330996319|ref|ZP_08320203.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573369|gb|EGG54980.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1364 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 5/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61 +IL+ ED+ +RR+L Y V C+NG A+D + + E L+++D++MP MDG Sbjct: 1092 RILVVEDETAIRRYLHGEF-SGEYHVCECSNGQEAWDYIVQNVEKVDLVVSDVMMPVMDG 1150 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 I L R + + + V+ +T + A + + +SKPF++ L LL Sbjct: 1151 IALCRNIKGSFNTNHIPVILLTAKSDDADRLEGLSIGADAYMSKPFNMDVLRQTAENLLK 1210 Query: 120 IK 121 K Sbjct: 1211 NK 1212 >gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] Length = 949 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|294054845|ref|YP_003548503.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Coraliomargarita akajimensis DSM 45221] gi|293614178|gb|ADE54333.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Coraliomargarita akajimensis DSM 45221] Length = 432 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 16/127 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+++ L L + Y V A D++ + P+ L+++D MP MD Sbjct: 1 MAGRILVLDDEENYAEMLRDLLQEHNYRVDMATRPERAIDQLEDIPYDLVISDYKMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--------VLSKPFHLRDLVN 112 G + +RA EL P+L V+ ++G N P+ K V+ KP + Sbjct: 61 GADFLQRARELYPNLPVILVSGLM--------NTPELVKVANMGVTLVMEKPLDTDKFLG 112 Query: 113 EVNRLLT 119 EV + T Sbjct: 113 EVAKFST 119 >gi|291279592|ref|YP_003496427.1| two-component system, chemotaxis family, response regulator CheY [Deferribacter desulfuricans SSM1] gi|290754294|dbj|BAI80671.1| two-component system, chemotaxis family, response regulator CheY [Deferribacter desulfuricans SSM1] Length = 122 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D D +R F L +G+E + +G A +K +SL+L+D+ MP MD Sbjct: 1 MKIKILVVDDSDLVRHFHSNILRASGFETDTAVDGMDALEKALSNNYSLILSDLNMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+ + + D + V+ IT N + A A + KP +DL+ V L Sbjct: 61 GLTFIKELRKADNETPVIIITTQEE---NENRIAGLKAGANLYIVKPVKPQDLITNVKML 117 Query: 118 LTI 120 L I Sbjct: 118 LGI 120 >gi|283779375|ref|YP_003370130.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pirellula staleyi DSM 6068] gi|283437828|gb|ADB16270.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pirellula staleyi DSM 6068] Length = 483 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 53/106 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +DD + R ++K L ++G+ + +A + F + + D+ MP M G++L Sbjct: 9 LLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMSGLDL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 PD +V+ +TG ++ ++ L+KPF LRDL Sbjct: 69 LAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDL 114 >gi|269794181|ref|YP_003313636.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096366|gb|ACZ20802.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 227 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 12/120 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LLAEDD + L +AL + GY VV G A D L++ D+ +P+MDG+E Sbjct: 3 HVLLAEDDPAIAEPLARALSREGYNVVVQGTGQGAIDNA--SVADLVVLDLGLPDMDGLE 60 Query: 64 LARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +AR L V+ +T A V L+ ++ ++KPF L +L+ V LL Sbjct: 61 VARAIRGLGLTTPVLVLTARADEVDLVVGLDAGAD-----DYVTKPFRLAELLARVRALL 115 >gi|237654500|ref|YP_002890814.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Thauera sp. MZ1T] gi|237625747|gb|ACR02437.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Thauera sp. MZ1T] Length = 703 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 7/88 (7%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 +IL+A+DD R + ALGK+G+EV +G A F ++L D+ MP +DG Sbjct: 5 RILVADDDPTARLLMQAALGKSGFEVAVAEDGEEALQAFAHATFDMVLLDVEMPRLDGYA 64 Query: 63 ---ELARRATELDPDLKVMFITGFAAVA 87 EL RR + P ++ +TG A Sbjct: 65 VCRELRRRCGDALP---ILMVTGMDDTA 89 >gi|225619616|ref|YP_002720873.1| signal receiver domain-containing protein [Brachyspira hyodysenteriae WA1] gi|225214435|gb|ACN83169.1| REC, Signal receiver domain protein [Brachyspira hyodysenteriae WA1] Length = 130 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIK-ALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++LA DD++ R LIK +E+V+ NG SA + P +++TD++MP M Sbjct: 4 GKPLILAVDDEEPIRDLIKYTFEPHDFEIVTAENGKSAITILEHNPVDVIITDLLMPSMT 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ L R + + ++ IT + + + A +++ KP L+ V+ + Sbjct: 64 GLALIREMKKRKSSIPIIIITAYGNTEMVKEIIAEGVFRLIEKPLDFDILIPIVHEAIEY 123 Query: 121 K 121 K Sbjct: 124 K 124 >gi|170746838|ref|YP_001753098.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653360|gb|ACB22415.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 202 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 49/101 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD MR + LG G++V GA D ++E +LTDI MP +DG+EL Sbjct: 6 VHVVDDDPAMRDSVGFLLGTEGFDVRLYEAGADLLDGLKEPAGGCVLTDIRMPGIDGLEL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 RR L V+ +TG V L ++ + KPF Sbjct: 66 LRRLRAAGHALPVVMMTGHGDVPLAVEAMKLGACDFIEKPF 106 >gi|251794485|ref|YP_003009216.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247542111|gb|ACS99129.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 1267 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ + I+ L + G+EV NG DK+ + + L+L DI MPEMDG+E Sbjct: 1010 RVLLAEDNHINQLVAIELLKERGFEVGLAENGREVLDKLEQGDWHLVLMDIHMPEMDGME 1069 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD 91 A DP + + I A +L D Sbjct: 1070 -ATTIIRNDPRYEQLPIIAVTANSLRAD 1096 >gi|157736372|ref|YP_001489055.1| two-component response regulator [Arcobacter butzleri RM4018] gi|157698226|gb|ABV66386.1| two-component response regulator [Arcobacter butzleri RM4018] Length = 226 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 52/107 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL EDDD +R + L + E+ +G Y ++ ++LTDI MP++DGI L Sbjct: 9 ILYIEDDDGVRNINSRFLNRMFNELYEAKDGEEGYALYKKYHPDIILTDIKMPKLDGISL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ + D K++ T F+ D+ K + KP R+L+ Sbjct: 69 TKKIRQKDKTTKIIISTAFSEKEYLIDAIELNIEKYIIKPLTSRNLM 115 >gi|119512832|ref|ZP_01631899.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena CCY9414] gi|119462505|gb|EAW43475.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena CCY9414] Length = 314 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 12/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +R L AL + GYE+V NG A + + ++L D +MP+MDG E Sbjct: 14 ILIVDDEQFIRMQLRLALEREGYEIVEAQNGTEALNLCEQLHPDIILLDAIMPDMDGFEC 73 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRL 117 R + V+ ITG L+ + + +V ++KP H L V RL Sbjct: 74 CTRLKSVAFSQCTPVLMITG-----LDDQESVDRAFEVGAIDFITKPIHWPVLRQRVKRL 128 Query: 118 LT 119 ++ Sbjct: 129 IS 130 >gi|332188890|ref|ZP_08390595.1| response regulator [Sphingomonas sp. S17] gi|332011072|gb|EGI53172.1| response regulator [Sphingomonas sp. S17] Length = 341 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 40/79 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +DDD +RR + +AL + G+ V +GA E F L+ D MP MDG+E Sbjct: 5 RILYIDDDDALRRLVARALARRGWAVTGAASGAEGVALAAEGGFDLVAVDHYMPGMDGLE 64 Query: 64 LARRATELDPDLKVMFITG 82 L V+++TG Sbjct: 65 TLTAINALREPPPVVYVTG 83 >gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC 74-1112] Length = 787 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 665 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 724 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 725 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 767 >gi|320173479|gb|EFW48677.1| Hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella dysenteriae CDC 74-1112] Length = 1197 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A K+ + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKISMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|313204107|ref|YP_004042764.1| histidine kinase [Paludibacter propionicigenes WB4] gi|312443423|gb|ADQ79779.1| histidine kinase [Paludibacter propionicigenes WB4] Length = 1298 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ + R F++ L + Y V+ NG +K + L++TD++MPEM G E Sbjct: 1052 KVLVVEDNAEFRMFIMGELMEK-YHVIEAANGKDGLEKALKHQPDLIITDVMMPEMSGTE 1110 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L R + + V+ +T + + +SKPF++ L+ ++ L+ + Sbjct: 1111 LCRLLKKNIQTSHIPVILLTAKTSDKAQIEGFEAGADAYISKPFNMDILLLRIHHLIEQQ 1170 Query: 122 N 122 N Sbjct: 1171 N 1171 >gi|331648035|ref|ZP_08349125.1| sensor protein EvgS [Escherichia coli M605] gi|331042895|gb|EGI15035.1| sensor protein EvgS [Escherichia coli M605] Length = 1197 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A K+ + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKISMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|303325918|ref|ZP_07356361.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302863834|gb|EFL86765.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 954 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++ R+ + L +AG V NG A + VR +P SL+L D+ MP MDG+E Sbjct: 600 VLVVDDNEINRQIAKELLEQAGLAVTVVGNGREAVEYVRRQPVSLVLMDVQMPVMDGLEA 659 Query: 65 ARRATELD---PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R EL +L ++ +T A D + L+KP + +L + L Sbjct: 660 TCRIRELGRSPEELPILAMTAHADKGSRMDGKSVGMNDYLTKPVNPAELYAALEEWL 716 >gi|300869949|ref|YP_003784820.1| response regulatory protein [Brachyspira pilosicoli 95/1000] gi|300687648|gb|ADK30319.1| response regulatory protein [Brachyspira pilosicoli 95/1000] Length = 130 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 53/111 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL +D++++R + L EV++ NG A + P +++TD++MP M G+ L Sbjct: 8 ILAVDDEENIRNLITYTLEAHDLEVLTAENGKVAITILEHNPVDVIITDLLMPSMTGLAL 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 R + + ++ IT + + + A +++ KP LV VN Sbjct: 68 IREMKKRKNSIPIIIITAYGNTDMVKEIIAEGVFRLIEKPLDFETLVPIVN 118 >gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 233 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 14/129 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ EDD + L L + GYE +G A+ K++ + ++L D+++P D Sbjct: 1 MKARILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHRD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ R+ + V+ +T + + D ++KPF +R+L+ Sbjct: 61 GLEICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADD-------YVTKPFSVRELMAR 113 Query: 114 VNRLLTIKN 122 + +L +N Sbjct: 114 IKVILRRRN 122 >gi|282890664|ref|ZP_06299187.1| hypothetical protein pah_c022o294 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499661|gb|EFB41957.1| hypothetical protein pah_c022o294 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 926 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 4/84 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + ++IL+ +D +R + L GYEV NG ++ VR + L++TD+ MP M+ Sbjct: 803 LKKRILVVDDSITVREVEKRLLQNKGYEVDVAINGMDGWNAVRIGQYHLVVTDVDMPRMN 862 Query: 61 GIELARRATELDPDLK---VMFIT 81 GIEL R DP LK VM ++ Sbjct: 863 GIELVRHIKN-DPKLKNLPVMIVS 885 >gi|258625103|ref|ZP_05720021.1| sensor histidine kinase/response regulator LuxN [Vibrio mimicus VM603] gi|258582605|gb|EEW07436.1| sensor histidine kinase/response regulator LuxN [Vibrio mimicus VM603] Length = 682 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G + + L+L DI MP++ G+ Sbjct: 564 RRILVVDDNQSIRTFTSILLEQQGYEVVQANDGCEVIAYMDTQTIDLVLMDIEMPKISGL 623 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E D D K + I G+ N+PK Sbjct: 624 EATHLIRSSDRDYKNIPIIGYTG------DNSPK 651 >gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] Length = 241 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D Sbjct: 12 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 71 Query: 61 GIELAR 66 G+E+ R Sbjct: 72 GLEVVR 77 >gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SE11] gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|254445580|ref|ZP_05059056.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198259888|gb|EDY84196.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1300 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 51/102 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED++ F+ KAL G E+ +G +A + E F ++L D+++P+ DG E Sbjct: 1181 KVLLVEDEEPNYLFIEKALRSTGAEITWAQDGVAAIEAFDEGGFGMVLLDVLIPKKDGYE 1240 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + +D ++ V+ + + + + + L KPF Sbjct: 1241 VLSHIRSVDTEVPVIVQSAYTMEGDEDKARSLGASSFLPKPF 1282 >gi|157693705|ref|YP_001488167.1| response regulator [Bacillus pumilus SAFR-032] gi|157682463|gb|ABV63607.1| response regulator [Bacillus pumilus SAFR-032] Length = 225 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ I L ED+ ++ L K L + V S G +A + + + P L + DI++P+ D Sbjct: 1 MSYTIYLVEDEQNLNELLTKYLESENWNVSSFLTGETAREAMNKPP-HLWILDIMLPDTD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G L + PD+ V+FI+ A ++ ++KPF R+L+ V +LL + Sbjct: 60 GYTLIKEIKAASPDVPVIFISARDADIDRVLGLELGSSDYIAKPFLPRELIIRVQKLLEL 119 >gi|153003694|ref|YP_001378019.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152027267|gb|ABS25035.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 130 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 11/126 (8%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF------SLLLTDIV 55 ++ ILL EDD +R + + L GYEV NG A +R L++ D+V Sbjct: 5 HRSILLIEDDSGIRDTVAECLASEGYEVAPVENGREALSWLRNTSRRNTARPDLIMVDLV 64 Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNA--PKNAKVLSKPFHLRDLVNE 113 MP M+G + EL D + I A +P S P+ L+KPF L L++ Sbjct: 65 MPVMNGAQFIE---ELRGDASLRDIPIVLMTAASPSSAMPLPRADAYLAKPFDLGALLDT 121 Query: 114 VNRLLT 119 V R T Sbjct: 122 VERHCT 127 >gi|149174812|ref|ZP_01853437.1| Periplasmic Sensor Hybrid Histidine Kinase [Planctomyces maris DSM 8797] gi|148846506|gb|EDL60844.1| Periplasmic Sensor Hybrid Histidine Kinase [Planctomyces maris DSM 8797] Length = 338 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +DD D+ + L L G E +S G Y+ E +++TD+V+PE +GI + Sbjct: 197 VLSIDDDRDISKALQMKLKPHGVECLSAFTGDQGYEMAVEHMPDVIITDLVLPEAEGIYI 256 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R R+ L ++ ++ +TG + A+ + L+KP + +L+ E+ ++ IK Sbjct: 257 MRRIRSNPLLSEIPIIVLTGQSYPAIKHQILSLGVEAFLTKPVSINELIKELQSVIPIK 315 >gi|187478800|ref|YP_786824.1| two-component system response regulator [Bordetella avium 197N] gi|115423386|emb|CAJ49920.1| two-component system response regulator [Bordetella avium 197N] Length = 231 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L GY V + +G +A + +PF LL+ D+ +P++ G+E Sbjct: 2 RILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQVTGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + L V+ +T +V ++KPF L +L V L Sbjct: 62 VLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRAL 115 >gi|116672432|ref|YP_833365.1| response regulator receiver protein [Arthrobacter sp. FB24] gi|116612541|gb|ABK05265.1| response regulator receiver protein [Arthrobacter sp. FB24] Length = 378 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ L+ EDDDD+R L+ L K G++V + + G + + ++ E L+ D+ +P++DG+ Sbjct: 20 RRALVIEDDDDIRGLLVHILTKQGFQVSAESTGRAGVELMQREGAELVTLDLNLPDIDGV 79 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ R + D ++ IT L+KPF R+L + + L Sbjct: 80 QVCRELRKFS-DAYILMITARGEELDRLTGLDTGADDYLTKPFSPRELASRITALF 134 >gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|320104803|ref|YP_004180394.1| histidine kinase [Isosphaera pallida ATCC 43644] gi|319752085|gb|ADV63845.1| histidine kinase [Isosphaera pallida ATCC 43644] Length = 1477 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D ++ L L + GY +G A D + + + L++ DI MP MDG+E Sbjct: 1335 EVLVADDVAVNQKLLASMLERFGYHADVVADGRQALDALAAKSYDLVMLDIHMPVMDGVE 1394 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKN---AKVLSKPFHLRDLVNEVNR 116 AR+ P+ + + A A +S A N +LSKP +L + R Sbjct: 1395 AARQIARAWPETRRPRLVAVTANARGEESAAWMNEGFVDILSKPIQPHELAETLER 1450 >gi|319947505|ref|ZP_08021737.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746445|gb|EFV98706.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 240 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Query: 6 LLAEDDDDMRRFLIKALG--KAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ ED++ +R+ L + + G +V+ NG A++K + + LLLTDI MP+M+G+ Sbjct: 1 MIVEDEELVRQGLTSLVNYEQFGMKVIDQAENGRIAWEKFQAQQADLLLTDINMPQMNGL 60 Query: 63 ELARRATELDPDLKVMFITGF 83 +LA+ E P ++F+TG+ Sbjct: 61 DLAQLVREKAPSCHIIFLTGY 81 >gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] Length = 964 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED + L KAG++V NG A + E F L+L DI MPEMDG+E Sbjct: 721 ILLAEDSPANQIIAGTMLTKAGFDVTYACNGVEAVKLMNERAFDLVLMDIRMPEMDGLEA 780 Query: 65 ARRATELDPDLKVMFITG 82 + +P+ ++ +T Sbjct: 781 SHIILSTNPNQIILAMTA 798 >gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042] gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|281179450|dbj|BAI55780.1| two-component sensor kinase [Escherichia coli SE15] Length = 1197 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A K+ + + LL+TD+ MP MDG EL Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKISMQHYDLLITDVNMPNMDGFEL 1020 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040 >gi|218676439|ref|YP_002395258.1| putative transcriptional regulator CpxR [Vibrio splendidus LGP32] gi|218324707|emb|CAV26330.1| putative transcriptional regulator CpxR [Vibrio splendidus LGP32] Length = 221 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + L + L GY V + + G SA + ++ P L+L D+++P + GI+ Sbjct: 3 RVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSNPVDLVLLDVMLPNLSGIQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A D + ++KPF++ +L+ + +L Sbjct: 63 VARRICQRFAT-PILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVIL 116 >gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL EDD+ + +++ L Y V ++G A++ V + L+L D+++P+MDGI Sbjct: 2 KILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLPKMDGIT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R+ ++ IT V L KPF L++L V LL Sbjct: 62 LCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALL 116 >gi|183980762|ref|YP_001849053.1| two-component sensor and regulator [Mycobacterium marinum M] gi|183174088|gb|ACC39198.1| two-component sensor and regulator [Mycobacterium marinum M] Length = 1287 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +L+A+D+ DMR L + L +E V +G SA + R L++TD++MP +DG Sbjct: 621 QLVLIADDNADMRAHLHRVLSPH-WETVLVADGESALNATRSLHPDLVVTDVMMPGLDGF 679 Query: 63 EL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E A RA + V+ ++ A D A L KPF ++LV V L Sbjct: 680 EFIAAIRADPVLAATPVLMLSARAGAEAVSDGFAGGADDYLLKPFRSQELVERVTSRL 737 >gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sonnei Ss046] gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185] gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088] gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088] gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185] gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB and RcsD [Escherichia coli W] gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B] gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010] gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G] gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357] gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli KO11] gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120] gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167] gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 236 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +D+ +R + AL AGYE + N A++ + + L+L D +MP G Sbjct: 8 GKKVLIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMMPGGSG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 IEL RR L D I A + + N + +V ++KPF R+LV + Sbjct: 68 IELTRR---LKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKA 124 Query: 117 LL 118 +L Sbjct: 125 VL 126 >gi|187925552|ref|YP_001897194.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716746|gb|ACD17970.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 242 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ IL+ +DD +R + L G++V + NG + ++++E +L++ DI+MPE+D Sbjct: 1 MNQSILVVDDDPVVRELVSGYLQGRGFKVDTLQNGLALQRRLQDERPALIVLDIMMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 GI R D+ V+ +T + + L D L KPF +LV Sbjct: 61 GISALRALRVAGDDIPVILLTARSDPIDRVIGLELGADD-------YLGKPFEPSELVAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 IRTVL 118 >gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 5 str. 8401] gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 226 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKIL+ +DD + L L G++ V+ +GA A + E L+L D+++P M+ Sbjct: 1 MPQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAEREQPDLILLDLMLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 GI++ RA D + ++ +T V L +S A ++KPF ++LV + Sbjct: 61 GIDIC-RAIRQDSAVPIIMLTAKTDTVDVVLGLESGA---DDYVNKPFKAKELVARI 113 >gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E+P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E + D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|88855731|ref|ZP_01130394.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88815055|gb|EAR24914.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 233 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 39/78 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ +M L++ L + GY V NG A F + D+++P M G E Sbjct: 11 QILVVEDEPEMAALLVRGLQEEGYAVTVAGNGIDAMTLAGAASFDAAVLDVMLPGMSGFE 70 Query: 64 LARRATELDPDLKVMFIT 81 L RR E + +M +T Sbjct: 71 LCRRLREKSTGIAIMLLT 88 >gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] Length = 241 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D Sbjct: 12 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 71 Query: 61 GIELAR 66 G+E+ R Sbjct: 72 GLEVVR 77 >gi|116620185|ref|YP_822341.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116223347|gb|ABJ82056.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 630 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 44/74 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+AED+ ++ + L + G+ V NG AY + E F L+L D+ MPE+DG+E Sbjct: 505 RVLVAEDNVINQKVICSMLRRQGWTVTLALNGEEAYRRFLESRFDLILMDVQMPEVDGLE 564 Query: 64 LARRATELDPDLKV 77 +RR + + + K+ Sbjct: 565 SSRRIRQAERNHKL 578 >gi|186685421|ref|YP_001868617.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nostoc punctiforme PCC 73102] gi|186467873|gb|ACC83674.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nostoc punctiforme PCC 73102] Length = 611 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L L + GY V N A + L+L DI+MPE+DG E+ Sbjct: 13 ILIVDDMADNLRVLSSILAREGYNVRKALNWQMALTATQTVLPDLILLDIMMPEVDGYEI 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + +A EL D+ V+FI+ V + ++KPF ++++ V L +++ Sbjct: 73 CQAFKAWELTADIPVIFISALDDVFDKVKAFRVGGVDYITKPFEFQEVLVRVKNQLALRS 132 >gi|331017488|gb|EGH97544.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 691 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + G+ + + + ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDESSVRMLVAEVITGLGFNCLEAADAQAGLQILQSDARIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKSSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863] gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|320329379|gb|EFW85372.1| response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 568 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + + G+ V+S NG A + E L+L D +MP MDG E Sbjct: 10 ILIADDSASDRLLLSTIVARQGHRVLSAGNGVEAVAIFKAESPQLILMDAMMPVMDGFEA 69 Query: 65 ARRATELDPD--LKVMFITGFA---AVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 ARR + + + ++F+T A+A D+ +SKP++ L +N +NR Sbjct: 70 ARRIKAMSGESLVPIIFLTSLTEGEALARCLDAGGD---DFMSKPYNPLVLAAKLNAMNR 126 Query: 117 L 117 L Sbjct: 127 L 127 >gi|319787984|ref|YP_004147459.1| chemotaxis protein CheA [Pseudoxanthomonas suwonensis 11-1] gi|317466496|gb|ADV28228.1| CheA signal transduction histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 2310 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++ +D MR+ + L + +EV + +G A +++ E L+L DI MP MDG EL Sbjct: 2188 VMVVDDSLTMRKVTGRVLERHNFEVATARDGVEALERLEERVPDLMLLDIEMPRMDGYEL 2247 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 A A DP D+ ++ IT + + L KP+ DL+ V LL I Sbjct: 2248 A-TAMRADPRFRDVPIVMITSRTGEKHRQRAFEIGVQRYLGKPYQELDLMRNVYDLLGI 2305 >gi|315123369|ref|YP_004065375.1| response regulator receiver domain protein (CheY-like) [Pseudoalteromonas sp. SM9913] gi|315017129|gb|ADT70466.1| response regulator receiver domain protein (CheY-like) [Pseudoalteromonas sp. SM9913] Length = 122 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ +D MR LI L + Y ++V +G A + ++ + F L++TD+ MP+MDGI Sbjct: 2 KILVVDDMPLMRHVLINMLRQLDYKDIVEATDGLQALNILQNQMFDLVITDLHMPKMDGI 61 Query: 63 EL---ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L R+ EL +L V+ +T + + + K + + KPF++ L ++ RL Sbjct: 62 TLLDNIRKDAEL-KNLPVLMVTCEDSSSTVKKAINAKVSGFIVKPFNMNVLSAQLTRL 118 >gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 913 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+D L++ + K + + +G A +KVR E F L+L D+ MP M G+E Sbjct: 801 ILVAEDNDS-NYLLVQHIIK-DHMLTRVKSGVDAVEKVRNEHFDLILMDMKMPIMGGLEA 858 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNR 116 RR E + D ++ +T A A D+ NA NA L+KP L+ +++ Sbjct: 859 TRRIREFNVDTPIVALTANAFDADKVDAINAGCNA-FLTKPLKKSQLIEILSK 910 >gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 971 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++R F++ L + Y V+ NG + + L+++D++MP M G++ Sbjct: 594 RILVVEDEPEIRDFVVSVL-RTSYRVMEAVNGEEGRQRALQSAPDLIVSDVMMPVMSGLQ 652 Query: 64 L--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + A R + D+ V+ +T VA + + KPF R+L+ + L ++ Sbjct: 653 MLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLRLR 712 Query: 122 N 122 + Sbjct: 713 D 713 >gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++A+DD DM L L GYEV+ +G A + RE L++ DI MP++DG E Sbjct: 2 KIMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRWRESLPDLVILDIQMPKLDGFE 61 Query: 64 LARR 67 + R+ Sbjct: 62 VCRQ 65 >gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 910 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+D L++ + K + + +G A +KVR E F L+L D+ MP M G+E Sbjct: 798 ILVAEDNDS-NYLLVQHIIK-DHMLTRVKSGVDAVEKVRNEHFDLILMDMKMPIMGGLEA 855 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNR 116 RR E + D ++ +T A A D+ NA NA L+KP L+ +++ Sbjct: 856 TRRIREFNVDTPIVALTANAFDADKVDAINAGCNA-FLTKPLKKSQLIEILSK 907 >gi|229505355|ref|ZP_04394865.1| response regulator [Vibrio cholerae BX 330286] gi|229510975|ref|ZP_04400454.1| response regulator [Vibrio cholerae B33] gi|229515432|ref|ZP_04404891.1| response regulator [Vibrio cholerae TMA 21] gi|229518096|ref|ZP_04407540.1| response regulator [Vibrio cholerae RC9] gi|229608374|ref|YP_002879022.1| response regulator [Vibrio cholerae MJ-1236] gi|262151280|ref|ZP_06028415.1| response regulator [Vibrio cholerae INDRE 91/1] gi|262167199|ref|ZP_06034911.1| response regulator [Vibrio cholerae RC27] gi|229344811|gb|EEO09785.1| response regulator [Vibrio cholerae RC9] gi|229347201|gb|EEO12161.1| response regulator [Vibrio cholerae TMA 21] gi|229350940|gb|EEO15881.1| response regulator [Vibrio cholerae B33] gi|229357578|gb|EEO22495.1| response regulator [Vibrio cholerae BX 330286] gi|229371029|gb|ACQ61452.1| response regulator [Vibrio cholerae MJ-1236] gi|262024343|gb|EEY43032.1| response regulator [Vibrio cholerae RC27] gi|262030896|gb|EEY49525.1| response regulator [Vibrio cholerae INDRE 91/1] Length = 365 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +DD RR L K GY+V+ NG K+R+ L+L D+ MP ++GIE Sbjct: 24 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEF 83 Query: 65 ARRATELDPDLKVMFITGFAAVA 87 + P L ++ ++ +A Sbjct: 84 VEEVSSSYPSLPLVVVSATEEMA 106 >gi|261345357|ref|ZP_05973001.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Providencia rustigianii DSM 4541] gi|282566400|gb|EFB71935.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Providencia rustigianii DSM 4541] Length = 446 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +DD + + L L G++V + +G A ++++E L+++D+ M EMDG+ L Sbjct: 9 LLLVDDDPSLLKLLGMRLSSEGFKVSTAESGPEALKRLQKEKIDLVISDLRMDEMDGMAL 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 + P+L V+ +T ++ PD+ A V S Sbjct: 69 FDEVQKAHPNLPVIILTAHGSI---PDAVAATQRGVFS 103 >gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 250 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDI 54 N +IL+ ED+D +R + AL + GYEV++ ++G +A + ++ E F L++ D+ Sbjct: 18 NHRILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDL 77 Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++P+++G+++ R + + ++ ++ A+ L+KPF +R+LV Sbjct: 78 MLPQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 NRLL 118 L+ Sbjct: 138 RALI 141 >gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii Sb227] gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83] gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|158425990|ref|YP_001527282.1| putative sensor protein [Azorhizobium caulinodans ORS 571] gi|158332879|dbj|BAF90364.1| putative sensor protein [Azorhizobium caulinodans ORS 571] Length = 816 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 52/114 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED++ R+ + L +AG+ G A +V E F ++L DI MP MDG+E Sbjct: 482 KVLLVEDNEVNRQVALGLLERAGHACTVAETGPEAIGRVAAEIFDVVLMDIQMPGMDGLE 541 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR L ++ +T A S A L+KP L + RL Sbjct: 542 ATRRIRAAGQSLPIIALTANAMPEDVARSLAAGMNGHLAKPVRPEQLEAALARL 595 >gi|32487266|emb|CAD91233.1| hypothetical protein [Nonomuraea sp. ATCC 39727] Length = 139 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 12/121 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD+ +R+ + L G+EVV+ +G D+VR+ ++ D++MP +DG Sbjct: 18 KVLVVDDDEVIRQLIAVNLNLEGFEVVTATDGQDCLDRVRDVMPDVITLDVMMPFLDGWT 77 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 A+ RA E +KV+ IT A D + + + L+KPF +L+ V Sbjct: 78 TAQRLRAEEDTSHIKVVLITARAQ-----DDDKIRGWGIGVDAYLTKPFDPAELIEVVRE 132 Query: 117 L 117 L Sbjct: 133 L 133 >gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 301] gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 301] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|28869074|ref|NP_791693.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852314|gb|AAO55388.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 691 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + G+ + + + ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDESSVRMLVAEVITGLGFNCLEAADAQAGLQILQSDARIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKSSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato Max13] gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato K40] gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P G Sbjct: 3 GRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 IELARR EL D+ ++ +T A + N + +V ++KPF R+LV + Sbjct: 63 IELARRLKRDELTGDIPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVARL 117 Query: 115 NRLL 118 +L Sbjct: 118 KAVL 121 >gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 2250] gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae FF5] gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae 642] gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. B076] gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. race 4] gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. mori str. 301020] gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. pisi str. 1704B] gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae Cit 7] gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aceris str. M302273PT] gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P G Sbjct: 3 GRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEV 114 IELARR EL D+ ++ +T A + N + +V ++KPF R+LV + Sbjct: 63 IELARRLKRDELTGDIPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVARL 117 Query: 115 NRLL 118 +L Sbjct: 118 KAVL 121 >gi|116619576|ref|YP_821732.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Candidatus Solibacter usitatus Ellin6076] gi|116222738|gb|ABJ81447.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Candidatus Solibacter usitatus Ellin6076] Length = 557 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 2 NQKILLAEDDD-DMRRFLIKALGK---AGYEVVSCNNGASAYD-----KVREEPFSLLLT 52 ++ +LLA DDD D+ R + L K + +VS ++G +A D + R E +L L Sbjct: 3 SKPVLLAVDDDTDVLRSVESDLRKHYARKFRIVSASSGKAALDVVARLRTRNEAIALFLV 62 Query: 53 DIVMPEMDGIELARRATELDPDLKVMFITGFA 84 D MP+M+GIE +A PD K + +T +A Sbjct: 63 DYRMPQMNGIEFLSQAIAQSPDAKRVLLTAYA 94 >gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|325927396|ref|ZP_08188644.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325542217|gb|EGD13711.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 690 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 Q +L+ EDD+ +R + + L + GY+ + +A + LL+TD+ +P ++G Sbjct: 570 QHVLVVEDDEQVRLLVTELLSELGYQADVVADADAALPILASARRIDLLVTDVGLPGLNG 629 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +LA A + DL V+F+TG+A A + + +++KPF L + +++ +L Sbjct: 630 RQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHDVL 686 >gi|320449570|ref|YP_004201666.1| two-component response regulator [Thermus scotoductus SA-01] gi|320149739|gb|ADW21117.1| two-component response regulator [Thermus scotoductus SA-01] Length = 227 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD ++ R + L +AG+ V +G + RE+ L++ D+ +P++DG Sbjct: 2 KRILLIEDDAEVARLVELELKEAGFTVEWAKSGMEGLVRHREKKPDLVVLDLGLPDLDGA 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ARR D D ++ +T AV + L KPFH +L+ + Sbjct: 62 EVARRIRATD-DTPILVLTAQDAVERKVGLLSDGADDYLVKPFHPAELLARIQ 113 >gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1334 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ ED++++R L + + Y V +G ++K +E ++L+DI+MP+M GIE Sbjct: 1085 KIIIVEDNEELRGLLARLFSRI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R ++ + V+ +T A ++KPF+++ L N L+ Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200 >gi|315094756|gb|EFT66732.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 243 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ + L A+ G++V + N+GA A + + +++ D+ +P+ DG+E Sbjct: 19 RVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGLE 78 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ P + +F+T A++ ++KPF L +++ + LL Sbjct: 79 VMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRTLL 133 >gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5] Length = 651 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 55/114 (48%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 LL +D D L+ + + +++V ++G A RE + +L D+ MP MDG+E Sbjct: 536 LLVAEDTDSNYLLVSLMLRREFDIVRASDGEEAVRICRELKPAAILMDVKMPGMDGLEAT 595 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RR DP + ++ +T FA + ++ LSKP + L + LL+ Sbjct: 596 RRIRAFDPSVPIVAVTAFAYDRDRQKALDAGASEYLSKPLNGERLRQTLRELLS 649 >gi|308177724|ref|YP_003917130.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745187|emb|CBT76159.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 205 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+AED+ +R +++ L GY+VV+ +NG SA +K RE L+L D+ MP MDG Sbjct: 19 RRVLVAEDETLIRLDIVEILRSEGYDVVAEADNGQSALEKARELKPDLVLMDVKMPVMDG 78 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 I A A + V+ +T F+ L + + KPF DL Sbjct: 79 ITAA-EAIVKERIAPVVLLTAFSQKELVERAREAGAMAYVVKPFTPADL 126 >gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|288962892|ref|YP_003453186.1| two-component response regulator [Azospirillum sp. B510] gi|288915158|dbj|BAI76642.1| two-component response regulator [Azospirillum sp. B510] Length = 460 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 54/112 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L +D+ MR + + L AG+ A D++ + LL++D+ MP MDG+ + Sbjct: 10 VLFIDDELAMRVSVTQWLQLAGFAAEGFETPQPALDRLSPDFPGLLVSDLRMPRMDGMAV 69 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 RA D DL V+ +TG VAL ++ + KPF LV + R Sbjct: 70 LERALARDADLPVILVTGHGDVALAVEAMRRGAYDFIEKPFEPDHLVAVLRR 121 >gi|283834623|ref|ZP_06354364.1| nitrogen regulation protein NR [Citrobacter youngae ATCC 29220] gi|291069533|gb|EFE07642.1| nitrogen regulation protein NR [Citrobacter youngae ATCC 29220] Length = 469 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + +G D + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLSCTAFESGKEVLDALASKTPDVLLSDIRMPGMDGLTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 244 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 53/116 (45%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GYEV + +G A D+ L++ DI MP MDG+ Sbjct: 9 QRILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ARR V+ +T V L KPF L +L V LL Sbjct: 69 TAARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALL 124 >gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sp. D9] gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|242280761|ref|YP_002992890.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242123655|gb|ACS81351.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 303 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 14/111 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62 KIL+ DD+ + ++ L + Y+VV NG A D+V + P L+L D++MPEMDG Sbjct: 6 KILIV-DDERLNLNVLSDLLRQDYKVVLAKNGNQALDRVNSDNPPDLVLLDVLMPEMDGY 64 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFH 106 E+ R+ D D+ V+FIT AL+ + + + ++ + KPFH Sbjct: 65 EVLRKIKTSDKSKDIPVVFIT-----ALDSEHDEARGLEMGAVDYIRKPFH 110 >gi|254488566|ref|ZP_05101771.1| sensor histidine kinase [Roseobacter sp. GAI101] gi|214045435|gb|EEB86073.1| sensor histidine kinase [Roseobacter sp. GAI101] Length = 751 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (6%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-M 59 N+ +L+ EDD +R+ + L K Y+VV +G A D + + ++ TD++MP M Sbjct: 636 NRTVLVVEDDARVRKIAVARLEKLAYQVVEAESGQQALDILAKRNDIDVVFTDMIMPSGM 695 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLL 118 G EL + +L P + + +G+A D P + L KP+ L ++ +LL Sbjct: 696 TGAELLVQVQDLYPQIMQLITSGYA-----EDGGIPNAGTLWLRKPYSLAEMSKVFRQLL 750 >gi|254483590|ref|ZP_05096814.1| PAS fold family protein [marine gamma proteobacterium HTCC2148] gi|214036152|gb|EEB76835.1| PAS fold family protein [marine gamma proteobacterium HTCC2148] Length = 856 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMD 60 + +L+ ED+ +RR ++ L + GY + N A + +L +D++MP +MD Sbjct: 734 ETVLVVEDETRVRRVTVRDLSRLGYTTIEAENADIARAIIESGVKIDMLFSDVLMPGKMD 793 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G LA E P++KV+ +GF+ + + + ++ KP+ +R++ + + + Sbjct: 794 GHMLALWTQERYPEIKVILTSGFSRGRADTAEDQTPSFLMIRKPYDMREVAKQFRNVFS 852 >gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1403 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ DMR +L + L + YEV + +G +A + L+LTD++MP +DG E Sbjct: 629 RILIADDNADMRDYLKRLLSQQ-YEVEAVVDGLTALKAIHSCHPDLVLTDVMMPGLDGFE 687 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + RA + ++ ++ A + L KPF R+L+ V L + Sbjct: 688 LLKSLRADLSTQHIPIILLSARAGEESRVEGLEAGADDYLIKPFSARELLARVEATLKL 746 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD+D R FL AL ++G V + + + A + +++++D+ MP+MDG Sbjct: 1278 EILVVDDDEDTRYFLAFALQQSGATVTTVGSASEALQVLVRSAPNVIVSDVGMPDMDGYM 1337 Query: 64 LARRATELDPD-----LKVMFITGFAA 85 L ++ L+ +K + +T +A Sbjct: 1338 LIQQIRMLEAQQGREKIKAIALTAYAG 1364 >gi|186894665|ref|YP_001871777.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pseudotuberculosis PB1/+] gi|186697691|gb|ACC88320.1| integral membrane sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 957 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 836 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 895 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 896 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 942 >gi|170025068|ref|YP_001721573.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pseudotuberculosis YPIII] gi|169751602|gb|ACA69120.1| integral membrane sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] Length = 957 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 836 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 895 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 896 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 942 >gi|167621347|ref|ZP_02389978.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] Length = 236 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G++ Sbjct: 5 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + +L V+ +T +V ++KPF L +L V L Sbjct: 65 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRAL 118 >gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli E24377A] gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E24377A] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|170741714|ref|YP_001770369.1| response regulator receiver protein [Methylobacterium sp. 4-46] gi|168195988|gb|ACA17935.1| response regulator receiver protein [Methylobacterium sp. 4-46] Length = 125 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED +++ FL + L + GYEVV ++G + + R ++L D+ +P +DG Sbjct: 3 KILLVEDHEEIWDFLSRRLTRRGYEVVMAHDGDAGVQQARSLRPDVILLDMNLPVLDGWS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD 91 +A RA + PD + + I A A++ D Sbjct: 63 VA-RALKSSPDTQSIPIIALTAHAMSGD 89 >gi|119898702|ref|YP_933915.1| transcriptional regulator [Azoarcus sp. BH72] gi|119671115|emb|CAL95028.1| transcriptional regulatory protein [Azoarcus sp. BH72] Length = 124 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 8/126 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+A+D+ ++ L + + G+ VV +G A +R E L+L D++MP+ Sbjct: 1 MTKKILIADDEQNIVISLEFLMKREGFTVVVATDGDEAVRMIRAEQPDLVLLDVMMPKKS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G E+ + + DP L+ + I A D+ K + ++KPF RDLV V Sbjct: 61 GFEVCQE-IKADPALQGVRI--LMLTAKGRDTEVAKGLALGADAYMTKPFSTRDLVARVR 117 Query: 116 RLLTIK 121 +L ++ Sbjct: 118 SMLGME 123 >gi|107026915|ref|YP_624426.1| CheA signal transduction histidine kinases [Burkholderia cenocepacia AU 1054] gi|116691888|ref|YP_837421.1| CheA signal transduction histidine kinases [Burkholderia cenocepacia HI2424] gi|105896289|gb|ABF79453.1| CheA signal transduction histidine kinase [Burkholderia cenocepacia AU 1054] gi|116649888|gb|ABK10528.1| CheA signal transduction histidine kinase [Burkholderia cenocepacia HI2424] Length = 769 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 645 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMEGWNAVRSDAFDLVVTDVDMPRMDG 704 Query: 62 IEL 64 IEL Sbjct: 705 IEL 707 >gi|45440759|ref|NP_992298.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Microtus str. 91001] gi|51595601|ref|YP_069792.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pseudotuberculosis IP 32953] gi|45435617|gb|AAS61175.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis biovar Microtus str. 91001] gi|51588883|emb|CAH20497.1| two component sensor kinase/response regulator protein RcsC [Yersinia pseudotuberculosis IP 32953] Length = 957 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 836 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 895 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 896 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 942 >gi|86146354|ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|85835833|gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222] Length = 937 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD+ LI AL K E V+SC +G A DK E PF ++ DI MP+MDG+ Sbjct: 668 VLAVDDNPANLKLITALLKERVETVISCTSGQKALDKATETPFDVIFMDIQMPQMDGVTA 727 Query: 65 ARRATEL 71 ++ L Sbjct: 728 CQKIKAL 734 >gi|85706910|ref|ZP_01038000.1| response regulator [Roseovarius sp. 217] gi|85668521|gb|EAQ23392.1| response regulator [Roseovarius sp. 217] Length = 421 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 11/131 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D RR L +L + G+EV ++G +A R+EP L+++D +MP + G+ Sbjct: 15 RRVLVVDDSRLQRRILSASLQRWGFEVQEADSGDAALILCRDEPPDLVMSDWMMPGLSGL 74 Query: 63 ELARRATELDPDLKVMFI-----TGFAAVALNPDSNA------PKNAKVLSKPFHLRDLV 111 E +R E+ D FI + VAL D+ A P NA L + Sbjct: 75 EFCKRFREMSRDSYGYFILLTSKSDKDEVALGLDAGADDFLTKPVNAAELRARISAGARI 134 Query: 112 NEVNRLLTIKN 122 + R LT KN Sbjct: 135 LRMERELTEKN 145 >gi|120598322|ref|YP_962896.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella sp. W3-18-1] gi|146293600|ref|YP_001184024.1| two component, sigma54 specific, Fis family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120558415|gb|ABM24342.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella sp. W3-18-1] gi|145565290|gb|ABP76225.1| two component, sigma54 specific, transcriptional regulator, Fis family [Shewanella putrefaciens CN-32] gi|319426903|gb|ADV54977.1| two component Sigma54 specific transcriptional regulator of C4-dicarboxylate transport, DctD [Shewanella putrefaciens 200] Length = 459 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L++ G + ++ + ++ ++++D+ MP++DGI L Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKAITRTEPKDIAKLLDKDWAGVVISDVNMPQLDGISL 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF---HLRDLVNEV--NRLLT 119 ++ + DPDL V+ +TGF +A+ ++ L KPF H+ D+V R LT Sbjct: 72 MQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSLT 131 Query: 120 IKN 122 ++N Sbjct: 132 LEN 134 >gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|332530660|ref|ZP_08406592.1| PAS/PAC sensor hybrid histidine kinase [Hylemonella gracilis ATCC 19624] gi|332039888|gb|EGI76282.1| PAS/PAC sensor hybrid histidine kinase [Hylemonella gracilis ATCC 19624] Length = 701 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 Q ++ +DD + + + L + G+++ + +A +RE+P + LL+TD MP Sbjct: 569 QHVMYVDDDQALAFLVDRVLSRRGFKISVFTDPLTALAALREQPQAYDLLITDYNMPGYS 628 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + A + P L + +G+ + + A ++ KP + +L + V RL+ Sbjct: 629 GVSLLQEARRIRPKLPMALTSGYVTPEIEVQAMAAGARALILKPNDVSELCDTVQRLI 686 >gi|298374281|ref|ZP_06984239.1| response regulator [Bacteroides sp. 3_1_19] gi|298268649|gb|EFI10304.1| response regulator [Bacteroides sp. 3_1_19] Length = 561 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L A+D+ D+ + I L GYEVV +G A D +E+ F ++ D MP + G+E Sbjct: 52 RVLWADDEIDLLKPHILFLQDKGYEVVPVVSGQDAIDCCKEQSFDIIFLDENMPGLTGLE 111 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ P++ V+ +T ++ + K A L KP VN LL+IK Sbjct: 112 TLSHIKEIAPNVPVVMVTKSEEESIMNQAIGNKIADYLIKP------VNPNQLLLSIK 163 >gi|284049978|ref|ZP_06380188.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 664 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60 Q IL+ +D++ +R +L Y+V+ NG A + + ++ DI+MP M Sbjct: 540 QLILVVDDEEPIREITKASLESFQYQVLVAGNGVEAMKIYSQYLDKIDCVVIDIMMPVMG 599 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G R L+P +K++ I+G+ +V + D LSKPF ++L+ + + L Sbjct: 600 GKTTMRELKSLNPQIKIVGISGYFSVDIAKDIAELGVDIFLSKPFTTQELLEVLQKCL 657 >gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 800 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 +K+L+ +DD R L ALGK G V+S +G + D + + L+L DI+MP +DG Sbjct: 680 KKVLIVDDDHRNRFALQSALGKQGITVISAEDGVACLDILEKNTTIDLVLMDIMMPHIDG 739 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 E + + + + I A A+N D A +SKP +L+ L + + L Sbjct: 740 FETMKHIRQSRKHIHLPII-ALTAKAMNHDKQKCLQAGANDYVSKPVNLQQLFSVMRVWL 798 Query: 119 T 119 T Sbjct: 799 T 799 >gi|261369014|ref|ZP_05981897.1| phosphate regulon response regulator PhoB [Subdoligranulum variabile DSM 15176] gi|282568888|gb|EFB74423.1| phosphate regulon response regulator PhoB [Subdoligranulum variabile DSM 15176] Length = 230 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + EDD +R AL GYE C +GAS + +RE L++ D+++P+ DG ++ Sbjct: 2 IYIVEDDASIRELEQYALQTNGYEATGCEDGASFWAALRESAPDLVILDVMLPDEDGYQI 61 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + AT P + V T V D A L KPF + + ++ V +L Sbjct: 62 LNKLRADPATRTIPVIMVTAKTSEIDVVKGLDHGAD---DYLCKPFGIMEFISRVKAVL 117 >gi|254508331|ref|ZP_05120453.1| response regulator [Vibrio parahaemolyticus 16] gi|219548745|gb|EED25748.1| response regulator [Vibrio parahaemolyticus 16] Length = 234 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KILL EDD D+ + L GYEV + +G+ A DK++E L+L D+++P Sbjct: 1 MNSKILLIEDDRDISQLTKMYLTAEGYEVEAIEDGSIAIDKIQEYKPDLVLLDLMLPGKS 60 Query: 61 GIELARRATELDPDLKVMFITG 82 G E+ A + + +M +T Sbjct: 61 GAEICNEARQFYTGM-IMVLTA 81 >gi|218710564|ref|YP_002418185.1| hybrid sensory histidine kinase BarA [Vibrio splendidus LGP32] gi|218323583|emb|CAV19820.1| Sensor protein barA [Vibrio splendidus LGP32] Length = 937 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 6 LLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LA DD+ LI AL K E V+SC +G A DK E PF ++ DI MP+MDG+ Sbjct: 668 VLAVDDNPANLKLITALLKERVETVISCTSGQKALDKATETPFDVIFMDIQMPQMDGVTA 727 Query: 65 ARRATEL 71 ++ L Sbjct: 728 CQKIKAL 734 >gi|213968598|ref|ZP_03396740.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301385543|ref|ZP_07233961.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060409|ref|ZP_07251950.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302132458|ref|ZP_07258448.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926531|gb|EEB60084.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 691 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 + +L+ +D+ +R + + + G+ + + + ++ + LL++DI +P M+ Sbjct: 564 ETVLIVDDESSVRMLVAEVITGLGFNCLEAADAQAGLQILQSDARIDLLISDIGLPGGMN 623 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+A A + P L +FITG+A ++ D + +VL+KPF L L V L+ Sbjct: 624 GREMADAAGDCRPGLPTLFITGYAKSSVLDDCHLRPCTQVLTKPFGLDALAGRVTGLI 681 >gi|212634365|ref|YP_002310890.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212555849|gb|ACJ28303.1| Helix-turn-helix, Fis-type [Shewanella piezotolerans WP3] Length = 451 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL EDD +R L+ L A Y+ V + + ++ + F ++++D+ M + G+ Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCVDVESAEAGILALKNDSFDMVISDVQMEGIGGLG 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 L + P + ++ +T +A + + NA K V L+KPF L+N+V+R L K Sbjct: 65 LLNYLQQHHPKVPMLLMTAYATI--DNAVNAMKLGAVDYLAKPFSPEVLLNQVSRYLPEK 122 Query: 122 N 122 + Sbjct: 123 S 123 >gi|196231464|ref|ZP_03130322.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224317|gb|EDY18829.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 944 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPE- 58 ++ ILL ED+ +R + L + GY+V+ +G A E + L+ TDIVMP Sbjct: 821 HETILLVEDEASVREVSKRMLERHGYKVLEAVSGTEALRVWGEHGDKIQLVFTDIVMPGG 880 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G ELA + + P+LK++F +G+++ + + KP L ++++ + + L Sbjct: 881 IGGRELADQLRMIQPNLKIVFTSGYSSELAGGAIRLQEGINFVQKPSSLNEVLDTIRKCL 940 >gi|157147352|ref|YP_001454671.1| nitrogen regulation protein NR(I) [Citrobacter koseri ATCC BAA-895] gi|157084557|gb|ABV14235.1| hypothetical protein CKO_03144 [Citrobacter koseri ATCC BAA-895] Length = 469 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + +G D + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLHCTTFESGNEVLDALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|153869726|ref|ZP_01999262.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073807|gb|EDN70737.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 549 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D R FL+ L G++V NNG A D + +++TD+VMP MDG Sbjct: 342 QILVVDDKWQNRAFLVNFLTNLGFKVFEANNGKEALDFALKNSLDMIITDLVMPIMDGFN 401 Query: 64 LARRATELDPDLKVMFITGFAAV 86 L R + D ++ I A V Sbjct: 402 LTREICKSDRLKNIIVIATSANV 424 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] gi|133739701|emb|CAL62752.1| Transcriptional regulatory protein TctD [Herminiimonas arsenicoxydans] Length = 233 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD + L ++L ++GY NG A + + F LL+ D+ +P+M G+E Sbjct: 2 RILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + +R + L V+ +T ++ ++KPF L +L V L Sbjct: 62 VLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRAL 115 >gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli HS] gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ATCC 8739] gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli HS] gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli ATCC 8739] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|157165506|ref|YP_001466493.1| acetoacetate metabolism regulatory protein AtoC [Campylobacter concisus 13826] gi|112800679|gb|EAT98023.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Campylobacter concisus 13826] Length = 384 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 7/120 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 I++ EDD +MR+ L ALG+ YE ++ + SA + +++ + L++TDI MP+MDG+ Sbjct: 3 IVIVEDDINMRKSLEIALGE--YEELNIKSYKSAVEALKKLSDDTDLIITDINMPKMDGL 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E + EL+ V+ +TG A + +S L+KPF + L + R+ +K Sbjct: 61 EFIK---ELNGKFDVIIMTGNATLNKAIESVRLGVKDFLTKPFDVSTLYEAIKRVEALKQ 117 >gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BL21(DE3)] gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|108758942|ref|YP_630901.1| response regulator CheY4 [Myxococcus xanthus DK 1622] gi|21464492|gb|AAM52212.1| CheY4 [Myxococcus xanthus] gi|108462822|gb|ABF88007.1| response regulator CheY4 [Myxococcus xanthus DK 1622] Length = 127 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN K+L+ ED + L L G E NGA K RE L+++D+ MPEMD Sbjct: 1 MNAKVLIVEDTKTITNLLQVYLMGWGLEFFDAPNGAIGLTKARELKPDLIISDVQMPEMD 60 Query: 61 GIEL--ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G L A RA D M +T A + L+KP + DL ++V +L Sbjct: 61 GFALCAAIRADRQLHDTPFMMLTSLKDDASRQKGKLVGASAFLNKPVSVDDLRSKVRDIL 120 Query: 119 TI 120 + Sbjct: 121 KL 122 >gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 835 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+D R + L V + NG A D +R+ F L+ DI MPEMDGIE Sbjct: 577 EVLLVEDNDLNRTVAVGLLTALNQRVTAVTNGREAIDVLRDRDFELVFMDISMPEMDGIE 636 Query: 64 LA---RR--ATELDPDLKVMFITGFAAVA 87 RR A E ++F+T A A Sbjct: 637 ATWAIRRGEAGERARSTPIVFLTAHALAA 665 >gi|134299360|ref|YP_001112856.1| two component sigma-54 specific Fis family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052060|gb|ABO50031.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum reducens MI-1] Length = 482 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 53/102 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ F L + GYEVV+ +G + ++ F L D+ + + DGI+ Sbjct: 6 KVLIVDDEIEVCNFFRFLLLEKGYEVVTAYSGKELTAMLLQDSFELAFVDLRLLDTDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 + + + PD +V+ +TG++ V D+ + KPF Sbjct: 66 VLEQIKAVQPDCRVILMTGYSTVKTAVDAIKLGAYDYIEKPF 107 >gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42] Length = 226 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G + Sbjct: 2 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + L KPF +L+ V LL Sbjct: 62 IIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 236 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD ++ L +L AG++V + +G++A + R+ L++ D+++P++DG E Sbjct: 12 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPDLDGFE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R E V+F+T A ++KPF L +L + +L Sbjct: 72 VIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVL 126 >gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 858 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 4/89 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPE 58 +KILL ED++ R ++ L +AG+EV S +G A K+++ + L+L DI MP Sbjct: 734 GKKILLVEDNELNREIAVEILKEAGFEVESAEDGEIAVRKMKQAADGQYDLILMDIQMPN 793 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVA 87 MDG E R+ L PD I FA A Sbjct: 794 MDGYEATRQIRAL-PDAAKAGIPIFAMTA 821 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 + L+A+DD D + L K G +G A + R + FS+ + D ++P+ Sbjct: 596 RALVADDDTDTCLSVSTMLSKIGMRPEWTISGREAVIRTRYAMEQGDEFSVYIIDWLIPD 655 Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 M+GIE+ R+ + + ++ +T + + ++ A KP L +L Sbjct: 656 MNGIEIVRQIRKVIRKSCPIIILTAYDWADIEEEARAAGVTAFCEKPLFLSEL 708 >gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus iners AB-1] gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] Length = 234 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 7/117 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E+AR + DL ++ +T AA L + A ++KPF R+LV V Sbjct: 61 GLEVAREVRQ-SHDLSIIMVTAKAAEIDKVLGLEMGAD---DYVTKPFSNRELVARV 113 >gi|258591258|emb|CBE67555.1| Two-component response regulator (fragment) [NC10 bacterium 'Dutch sediment'] Length = 329 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 9/123 (7%) Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 LL DD+ L+ AL +A GYEV+S +G A V P L+L DI+MP++DG + Sbjct: 13 LLVVDDNAQNIELLTALMEAEGYEVISAADGLEALTHVAAAPPDLILLDIMMPKLDGYAV 72 Query: 65 ARR-----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 RR AT L P ++ +T A ++KPF +L + LL Sbjct: 73 CRRLKEEAATRLVP---IVLLTALGAEEARIRGIEAGADDFITKPFSRTELKARIRSLLR 129 Query: 120 IKN 122 +K+ Sbjct: 130 LKS 132 >gi|291295292|ref|YP_003506690.1| response regulator receiver protein [Meiothermus ruber DSM 1279] gi|290470251|gb|ADD27670.1| response regulator receiver protein [Meiothermus ruber DSM 1279] Length = 295 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D +R+ L K L G V + + D + +L++ D+VMP M G E Sbjct: 5 KVLVVDDSTSVRKVLEKLLSSRGLVVTTSESAEQGLDAINHHAPNLVIADVVMPGMSGFE 64 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + ++ V+ I+G ++ + V+SKPF DL ++ R L Sbjct: 65 LCQMLKTQASTQNIPVILISGIINESVVTQAQQAGAFDVVSKPFTPDDLFPKIERAL 121 >gi|283787466|ref|YP_003367331.1| nitrogen regulation protein NR(I) (two-component system response regulator) [Citrobacter rodentium ICC168] gi|282950920|emb|CBG90597.1| nitrogen regulation protein NR(I) (two-component system response regulator) [Citrobacter rodentium ICC168] Length = 469 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + NG + + + +LL+DI MP MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLNCATFENGNEVLNALASKTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 879 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 758 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 817 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 818 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 860 >gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|257791095|ref|YP_003181701.1| histidine kinase [Eggerthella lenta DSM 2243] gi|257474992|gb|ACV55312.1| histidine kinase [Eggerthella lenta DSM 2243] Length = 713 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEP--FSLLLTDIVMPEMDG 61 ILLAED++ R ++ L G +V + NGA A + V EP ++L+L DI MP M+G Sbjct: 586 ILLAEDNEMNREIIVDLLSDLGVDVETACNGAEALEMVASSEPGRYALVLMDIQMPVMNG 645 Query: 62 IELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 +E A RA+ PD + I +A A D + + LSKP +L D+ + +R Sbjct: 646 LEAASAIRASG-HPDAARLPIIALSAGAFEEDVQRSLHHGMQDHLSKPMNLDDVRDVFHR 704 Query: 117 LL 118 + Sbjct: 705 FI 706 >gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|170701180|ref|ZP_02892152.1| CheA signal transduction histidine kinase [Burkholderia ambifaria IOP40-10] gi|170133923|gb|EDT02279.1| CheA signal transduction histidine kinase [Burkholderia ambifaria IOP40-10] Length = 769 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 645 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMDGWNAVRSDAFDLVVTDVDMPRMDG 704 Query: 62 IELARRATELDPDLK---VMFIT 81 IEL DP LK VM ++ Sbjct: 705 IELV-TLIRSDPALKRVPVMIVS 726 >gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella dysenteriae Sd197] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|197122934|ref|YP_002134885.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196172783|gb|ACG73756.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 240 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 41/83 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ L+ +D+ D L + L AG+EV +GA A R F +LTD+ MP M G Sbjct: 2 RRYLIVDDNRDFAENLAEILRDAGHEVALAGDGAEALALARGTRFDAILTDMRMPLMGGA 61 Query: 63 ELARRATELDPDLKVMFITGFAA 85 EL LDP + IT +A Sbjct: 62 ELVHELRRLDPGAPALVITAYAG 84 >gi|188579429|ref|YP_001922874.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|179342927|gb|ACB78339.1| response regulator receiver protein [Methylobacterium populi BJ001] Length = 83 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MP M G ELA RA LDP V+ +TG+A A P P VL KPF L +L V Sbjct: 1 MPGMTGTELAGRALALDPAPGVLMMTGYADAAALPSEGVP----VLRKPFALDELRAAVE 56 Query: 116 RLLT 119 RLL+ Sbjct: 57 RLLS 60 >gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 225 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 49/103 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD D+ R L AL AGY V +G A EP+ ++ D+ +P++DG+ Sbjct: 2 RILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQYLGENEPYDAVILDLGLPKVDGVS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 + R + V+ +T A + L+KPFH Sbjct: 62 VLERWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFH 104 >gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 226 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +DD + + L GYE C +GA A D + L+L D+++P MD Sbjct: 1 MNPRILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ R E + + ++ +T + A + KPF+ ++LV V L Sbjct: 61 GIEICARIRE-ESGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRL 117 >gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 230 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 15/120 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ EDD+ + L L G+ V C NG ++R+ + LL+ DI++P M+G Sbjct: 2 RKILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLPGMNGY 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+ ++ + + D+ V+ ++ + L D ++KPF +LV VN Sbjct: 62 EILKKIRD-EKDIPVLIVSAKKEEFDKIHGLKLGADD-------YITKPFSPGELVARVN 113 >gi|46121621|ref|XP_385365.1| hypothetical protein FG05189.1 [Gibberella zeae PH-1] Length = 1267 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 19/136 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 + LL +D+ L + K + + +G A ++ +E P FS +L DI MP MD Sbjct: 1113 KSFLLVDDNPINLSILCAYMKKLKSKYATAADGLEAVERFQENPDLFSCILMDISMPRMD 1172 Query: 61 GIELARR------ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL------- 107 GIE ++ + E +P + ++ +TG A+ + D+ A LSKP L Sbjct: 1173 GIEATKKIRSFEHSKEREP-VVILALTGLASASAQQDAYASGVDVFLSKPVKLKELSTIL 1231 Query: 108 --RDLVNEVNRLLTIK 121 RDLV+ V+RLL ++ Sbjct: 1232 RDRDLVS-VDRLLMVR 1246 >gi|186681898|ref|YP_001865094.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464350|gb|ACC80151.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 374 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 12/129 (9%) Query: 2 NQKI--LLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 N KI +LA DD L++A L GYE+ ++G A +V + P L+L D++MP Sbjct: 6 NNKIYRILAVDDTRDNLILVQAILESEGYEIDLVSDGIKALRQVEKSPPDLILLDVMMPG 65 Query: 59 MDGIELARRATELDPDLK---VMFITGF--AAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 MDG E+ RR +P + ++ IT F ++V D+ A + KPF +L+ Sbjct: 66 MDGYEVTRRIRN-NPAISYIPILLITAFHESSVVEGLDAGAD---DFIRKPFDTDELLAR 121 Query: 114 VNRLLTIKN 122 V LL +K+ Sbjct: 122 VRSLLRLKH 130 >gi|330912168|gb|EGH40678.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA [Escherichia coli AA86] Length = 1128 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A K+ + + LL+TD+ MP MDG EL Sbjct: 892 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKISMQHYDLLITDVNMPNMDGFEL 951 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 952 TRKLREQNSSLPIWGLTANA 971 >gi|331002395|ref|ZP_08325913.1| hypothetical protein HMPREF0491_00775 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410211|gb|EGG89645.1| hypothetical protein HMPREF0491_00775 [Lachnospiraceae oral taxon 107 str. F0167] Length = 220 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED++D+ L K L K Y V + +G A E + L++ D+ MP++DG+E Sbjct: 2 RLLICEDEEDILNGLAKGLRKLNYYVDTAMDGEEALSLYFESEYDLIILDLNMPKLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + E + + KV+ ++ + L D A L KPFH R+L + LL Sbjct: 62 VLKTIREDNAESKVIILSARDTLNDKVLGLDLGAN---DYLVKPFHFRELEARIRVLL 116 >gi|319902304|ref|YP_004162032.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] gi|319417335|gb|ADV44446.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] Length = 241 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 52/107 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED++ + + L G+ + +G + + +L+ D++MP MDG E+ Sbjct: 6 ILLVEDEETLAMIIKDTLNSQGFAIHIAGDGEEGLRRFFDLRPDVLVADVMMPRMDGFEM 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 RR + D V+F+T +A+ + L KPF +++L+ Sbjct: 66 VRRIRQTDKHTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELI 112 >gi|307720586|ref|YP_003891726.1| two component, sigma54 specific, transcriptional regulator, Fis family [Sulfurimonas autotrophica DSM 16294] gi|306978679|gb|ADN08714.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Sulfurimonas autotrophica DSM 16294] Length = 379 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KI + EDD +MR+ L A+ +EV + N A K ++ F L++TDI MP MDGI Sbjct: 2 KIAIVEDDINMRKSLEIAMSDYKEFEVKTFKNAKDAL-KGLDDSFDLVITDINMPGMDGI 60 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E + EL+ +V+ +TG A ++ +S L KPF + LV+ + R Sbjct: 61 EFVK---ELNGRYEVIIMTGNATLSRAIESIHLGVKDFLLKPFDVDTLVDAIKR 111 >gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|299532147|ref|ZP_07045541.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni S44] gi|298719809|gb|EFI60772.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni S44] Length = 716 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 10 DDDDMRRFLI-KALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGIELAR 66 DDD FL + L + GYEV + A + +EP F L++TD MP G++L R Sbjct: 603 DDDQALVFLFQRLLRRRGYEVSGFTDPHEAMAALHQEPQRFDLIVTDYNMPGFSGLDLLR 662 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A +++P L V +G+ + + A ++ KP +++ V+ LL Sbjct: 663 QALQINPQLPVALASGYVTAEIEQAAIAAGARALIHKPNDVQEFCATVHELL 714 >gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 224 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD D+ R L+ AL +AGY V +G + EP+ ++ DI +P+ DG+ Sbjct: 2 RLLVVEDDKDLNRQLVTALEQAGYAVDRAFDGDEGHFLGDTEPYDAVVLDIGLPKKDGVS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T + ++KPFH+ +L+ + LL Sbjct: 62 VLEQWRKAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALL 116 >gi|255292073|dbj|BAH90553.1| serine/threonine kinase [uncultured bacterium] gi|255292618|dbj|BAH89728.1| serine/threonine kinase [uncultured bacterium] Length = 2112 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 10/121 (8%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+AED+ ++ ++ L + G EV NG +A + E + +L DI MPE+DG+ Sbjct: 1836 RRILVAEDNPINQQLALEFLQRRGAEVHIAENGRAAVKRATESDYDAILMDIHMPELDGL 1895 Query: 63 ELARRATELDPDLKVMFITGFA-----AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E A + D+ ++ ++ A A A++ NA ++KP L+ E++ L Sbjct: 1896 EAATILRQQSLDMPIIAVSADALSESKAAAVDAGCNA-----YITKPIDFDTLLIELDDL 1950 Query: 118 L 118 L Sbjct: 1951 L 1951 >gi|238760198|ref|ZP_04621344.1| Sensor kinase protein rcsC [Yersinia aldovae ATCC 35236] gi|238701577|gb|EEP94148.1| Sensor kinase protein rcsC [Yersinia aldovae ATCC 35236] Length = 955 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 48/106 (45%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L L GY+V++ N+G A + ++LTD+ MP MDG L Sbjct: 835 ILVVDDHPINRRLLADQLTALGYQVITANDGLDALAVLNANTVDIVLTDVNMPNMDGYRL 894 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R +L+ V+ +T A LSKP L L Sbjct: 895 TQRLRQLNHHFPVIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 940 >gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 224 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E+P +L+ D+++P+ DG E Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQP-DVLILDVMLPDTDGYE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E + D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 62 LLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 114 Query: 117 L 117 + Sbjct: 115 M 115 >gi|297565378|ref|YP_003684350.1| response regulator receiver protein [Meiothermus silvanus DSM 9946] gi|296849827|gb|ADH62842.1| response regulator receiver protein [Meiothermus silvanus DSM 9946] Length = 125 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59 M +L+ +D+ MR + L AGY+V +GA A + + + P L++TDI MP M Sbjct: 1 MAATLLVVDDEPHMRLLATRILSNAGYQVFQAAHGAEALEVLLQHPEIRLVVTDIAMPVM 60 Query: 60 DGIELARR 67 DG+EL ++ Sbjct: 61 DGLELLQK 68 >gi|256376443|ref|YP_003100103.1| response regulator receiver protein [Actinosynnema mirum DSM 43827] gi|255920746|gb|ACU36257.1| response regulator receiver protein [Actinosynnema mirum DSM 43827] Length = 120 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGY---EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KIL+ +D MR+ +I+ L +AG+ +VV +G A++ V+ E L+L+D MP M Sbjct: 2 KILVVDDSRVMRQIVIRTLRQAGFGDHDVVEATDGQHAHEVVQAEKPDLVLSDWNMPGMT 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 GIEL R + F+T ++ + + +++KPF Sbjct: 62 GIELLRALRSSGTNTPFAFVTSESSDEMQKIAEDGGAMFLITKPF 106 >gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 887 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 11/119 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI- 62 +ILLAED+ ++ + L + GY NG + +R++ + ++L D+ MPEMDG+ Sbjct: 763 RILLAEDNAVNQKVALHLLKRLGYGADVAKNGIQVLEALRQQSYDVILMDVQMPEMDGLT 822 Query: 63 --ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 + RR+ P + M A A+ D A A + +SKP L DLV + + Sbjct: 823 ATQQIRRSGLPQPRIIAM-----TANAVQGDREACLEAGMDDYVSKPIRLPDLVEALQK 876 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D +R L + L GY++ NG ++ ++L D VMP MDG Sbjct: 13 ILVVDDAKTVRALLREHLESVGYQLAEAVNGEDCLKSFQQLRPDIVLLDAVMPGMDGFNC 72 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R L D ++ ITG + + A ++KP H L V+RL+ Sbjct: 73 CARLRRLPQGMDTPILMITGLDDPSSVERAFAAGATDYITKPIHWAVLRMRVSRLI 128 >gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 536] gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536] gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|154174918|ref|YP_001408208.1| two component transcriptional regulator [Campylobacter curvus 525.92] gi|112802461|gb|EAT99805.1| two component transcriptional regulator, winged helix family [Campylobacter curvus 525.92] Length = 225 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+AEDD+ R ++ L EVV +G + ++ + ++LTDI MP M+G E+ Sbjct: 12 VLVAEDDEMARGLIVGGLKPYCGEVVGVADGLAGVERFKRFGADVVLTDIHMPVMNGFEM 71 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDL 110 + L P K + T + + D+N K+ + L KP ++DL Sbjct: 72 MKEIARLKPQQKFIVFTSY-----DTDTNLIKSLEQGATLFLKKPIDIKDL 117 >gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|15895486|ref|NP_348835.1| chemotaxis signal receiving protein CheY [Clostridium acetobutylicum ATCC 824] gi|15025216|gb|AAK80175.1|AE007722_4 Chemotaxis signal receiving protein CheY [Clostridium acetobutylicum ATCC 824] gi|325509633|gb|ADZ21269.1| Chemotaxis signal receiving protein CheY [Clostridium acetobutylicum EA 2018] Length = 119 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 K+L+ +D MR + L K G+E+V +NG A + ++E ++ DI MP+MDGI Sbjct: 3 KVLIVDDAAFMRMMIKDILEKNGFEIVGEASNGLKAVEIYKKEKPDVVTMDITMPDMDGI 62 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E + DP +V+ + + D+ + KPF ++ + + L Sbjct: 63 EAVKAIKAFDPAARVIMCSAMGQQTMVMDAIRAGARDFIVKPFQQDRVLEAIKKAL 118 >gi|238788139|ref|ZP_04631934.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii ATCC 33641] gi|238723726|gb|EEQ15371.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ + + L+ L AGY NG+ VR+ P S++L D+++P DGI + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGSEVVGAVRQAPPSIILLDLMLPGTDGISI 73 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 R D+ +M +T + + D + KP+ R++V V + Sbjct: 74 CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADD-------YICKPYSPREVVARVKTI 125 Query: 118 L 118 L Sbjct: 126 L 126 >gi|118579152|ref|YP_900402.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] gi|118501862|gb|ABK98344.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] Length = 321 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 12/124 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KILLA+D +++ + G Y + +NG +A D+ E +LL D +MP M Sbjct: 1 MSTKILLADDSITIQKVIGIIFGSEEYALTVVDNGKAALDRALEVIPDILLIDALMPGMS 60 Query: 61 GIELARRATELDPDL---KVMFITGFAAVALNP-DSNAPKNAKV---LSKPFHLRDLVNE 113 G E+ +R E+ P+L ++ +TG + P D + ++KPF + ++N+ Sbjct: 61 GYEVCQRVREI-PELAAKPILLLTG----SFEPFDETKARECGADDFIAKPFESQQIINK 115 Query: 114 VNRL 117 V L Sbjct: 116 VTEL 119 >gi|114566980|ref|YP_754134.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337915|gb|ABI68763.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 124 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 ++I++ +D + +R F L AG++V+S +GA A +K+ EEP +++TDI MP MD Sbjct: 4 KRIIVVDDSEMIRNFHCYILKTAGFQVMSAVDGADALEKIYSSEEPIDMVVTDINMPNMD 63 Query: 61 GIELARRATE 70 G R E Sbjct: 64 GYTFIERLRE 73 >gi|332306937|ref|YP_004434788.1| response regulator receiver protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174266|gb|AEE23520.1| response regulator receiver protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 121 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ + L A Y+V + N+G + D +++ F +LTD MP MD Sbjct: 1 MSKHILIVDDSASIRQMVEMTLKSAAYQVTTANDGQAGLDLCKKQQFDFVLTDQNMPRMD 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ L + R + ++ +T A + A + KPF + L+ +++L Sbjct: 61 GLTLIKSLRGLANYRTIPIVVLTTEAGDDMKAKGRAVGATGWMVKPFDPQKLLAVSSKVL 120 >gi|330958568|gb|EGH58828.1| histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 534 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE-M 59 +++IL+ ED D+ L GY N A K + LL TD++MP M Sbjct: 409 SERILIVEDRADVAELAKMVLDDYGYVSDIVLNAREALKKFESGSHYDLLFTDLIMPGGM 468 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +G+ LAR P +KV+ TG+A ++ +V+SKP DL +V ++L Sbjct: 469 NGVMLAREVKRRYPKVKVLLTTGYAESSIERTDLGGSEFEVISKPCMPHDLARKVRQVL 527 >gi|329954663|ref|ZP_08295723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328527204|gb|EGF54208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1346 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N K+L+ ED+D +R L L + Y+V +G +K RE ++L+DIVMP+M G Sbjct: 1089 NAKMLIVEDNDSLREML-AGLFRPYYDVALAVDGEDGTEKAREFCPDIILSDIVMPKMTG 1147 Query: 62 IELARR-ATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E ++ T+ + V+ +T AV + ++KPF+ L++ N L+ Sbjct: 1148 TEFCKQIKTDFATCHIPVVLLTARTAVEHTLEGFRIGADDYITKPFNTALLISRCNNLV 1206 >gi|312130582|ref|YP_003997922.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907128|gb|ADQ17569.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1365 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED++++R+ + ++L K Y + NG + KVR L++TDI+MP DGI L Sbjct: 1107 VLIVEDNEEIRQVISQSLEKT-YAINEAANGQEGWQKVRSLLPDLVITDIMMPVEDGITL 1165 Query: 65 ARRATE-LDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + L+ + + V+ +T A+ + + L+KPFH L ++ +L Sbjct: 1166 LRNIKQNLETNHIPVLLLTARTAMESVIEGLQSGSDDYLTKPFHPEVLSLKIRNIL 1221 >gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 239 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ +DD +R L + L + G+ V S NG + E F L++ D+++P DG Sbjct: 4 SHKILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLMLPGEDG 63 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + + RR ++ L ++ +T + + D P KPF+ R+L+ + Sbjct: 64 LSICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLP-------KPFNPRELLARI 116 Query: 115 NRLL 118 +L Sbjct: 117 KAVL 120 >gi|302344385|ref|YP_003808914.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301640998|gb|ADK86320.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 301 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 1/111 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +D+ R K L + G++ + +G A +K+ ++P ++L DI MP MDG+E Sbjct: 7 KVLLVDDEAQFRATTEKILQRKGFQTILAADGRQALEKIAQKPDVVIL-DIKMPGMDGLE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 R +L V+ +TG + L ++ + L+KP + L +++ Sbjct: 66 TLRELRKLSATTPVIMLTGHGSGHLAQEALQHGASDFLAKPCDIDLLASKI 116 >gi|302335808|ref|YP_003801015.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301319648|gb|ADK68135.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 231 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 40/67 (59%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +L+ +D ++ + LG G +C++G SA ++ E + L++ DI+MP +D Sbjct: 1 MSEHVLVVDDSREIADLVTTLLGAEGIHADACHDGESALERFAERGYGLVILDIMMPGLD 60 Query: 61 GIELARR 67 G E+ RR Sbjct: 61 GWEVCRR 67 >gi|319764499|ref|YP_004128436.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826715|ref|YP_004390018.1| response regulator receiver protein [Alicycliphilus denitrificans K601] gi|317119060|gb|ADV01549.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329312087|gb|AEB86502.1| response regulator receiver protein [Alicycliphilus denitrificans K601] Length = 120 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL +D MR+ + L AGY VV +G A +K L+L D MP +DGI Sbjct: 2 QSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKAETHDIDLVLADQNMPRLDGI 61 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L R RA ++ +T ++ + A L KPF LV + +++ Sbjct: 62 GLTRKLRAHPRFKSTPILILTTESSDQMKQAGRAAGATGWLVKPFDPTRLVEVIQKVI 119 >gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii SL3/3] Length = 1079 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPE 58 + ILL ED++ R + L + G+ V S NGA A +KV + L+L D+ MP Sbjct: 956 GKHILLVEDNELNREIAQEILREYGFLVDSAENGAVAVEKVSTAAPGSYDLVLMDVQMPI 1015 Query: 59 MDGIELARRATEL-DPDLKVMFITGFAAVALNPD-SNAPKNA--KVLSKPFHLRDLVNEV 114 MDG R+ L DP + I A A + D NA ++ LSKP + DLV E+ Sbjct: 1016 MDGYTATRKIRALDDPARAKLPILAMTANAFDEDRRNALESGMNGFLSKPIVIDDLVQEL 1075 Query: 115 NRLL 118 ++L Sbjct: 1076 RKIL 1079 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58 K L+ +DD + + K L K G +G A + R+ + + + D +P+ Sbjct: 816 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDVYHAYIIDWRLPD 875 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 M+GIE+ R+ L D ++ +T + + ++ A +KP + DL Sbjct: 876 MNGIEVTRQIRSLHDDTPIIILTAYDWSDIEVEAKAAGVTAFCAKPMFMSDL 927 >gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 233 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +IL+ ED+ ++ R + L GYE +G SA +++ + +SL+L D+++P + G Sbjct: 3 NARILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSG 62 Query: 62 IELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +E+ RR + V+ +T + + D A ++KPF + +L+ + L Sbjct: 63 MEVLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGA---NDYVTKPFEIEELLARIRACL 119 >gi|268610621|ref|ZP_06144348.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 234 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +DD D+ + K LGK GY + NG A D + + L+L D++MP++DG Sbjct: 5 NSAILVVDDDHDIVNAIAKLLGKEGYIIYKAYNGLEAIDMLMQHEIQLILIDVMMPKLDG 64 Query: 62 I 62 + Sbjct: 65 L 65 >gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] Length = 225 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + ++K L Y V C NG A D + + ++ DI++PE++G E Sbjct: 2 RILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIMLPELNGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D V+F+T ++ L+KPF +L+ + +L Sbjct: 62 VLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVML 116 >gi|258623437|ref|ZP_05718440.1| sensor histidine kinase/response regulator LuxN [Vibrio mimicus VM573] gi|258584252|gb|EEW08998.1| sensor histidine kinase/response regulator LuxN [Vibrio mimicus VM573] Length = 662 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R F L + GYEVV N+G + + L+L DI MP++ G+ Sbjct: 544 RRILVVDDNQSIRTFTSILLEQQGYEVVQANDGCEVIAYMDTQTIDLVLMDIEMPKISGL 603 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 E D D K + I G+ N+PK Sbjct: 604 EATHLIRSSDRDYKNIPIIGYTG------DNSPK 631 >gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 236 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +D+ ++R L +L AG+EV + +G SA + + L++ D+++P++DG E Sbjct: 5 RLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPDLDGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + RR D V+F+T ++KPF L ++V + +L N Sbjct: 65 VTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTN 123 >gi|289209556|ref|YP_003461622.1| CheA signal transduction histidine kinase [Thioalkalivibrio sp. K90mix] gi|288945187|gb|ADC72886.1| CheA signal transduction histidine kinase [Thioalkalivibrio sp. K90mix] Length = 1832 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +I++ +D +R+ + L + GY+VV+ +G A + E L+L D+ MP MDG E Sbjct: 1711 RIMVVDDSITIRKVTARLLARHGYDVVTARDGLDAVTMLEERRPQLILLDVEMPRMDGFE 1770 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 A + P+L ++ IT + ++ L KP+ DL++E+ R L Sbjct: 1771 FAAHVRD-HPELSQVPIIMITSRSGTKHRERASRLGVNGYLGKPYLENDLLDEIRRHL 1827 >gi|206563842|ref|YP_002234605.1| DNA-binding response regulator CreB [Burkholderia cenocepacia J2315] gi|198039882|emb|CAR55857.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 237 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q IL+ ED+ + ++ ALG G + V C G +A D++R L++ D+ +P++ Sbjct: 1 MTQPTILIVEDEQAIADTIVYALGTDGMQTVHCTLGQAALDRLRGTRVDLVVLDVGLPDL 60 Query: 60 DGIELARRATELDPDLKVMFITG 82 G E+ RR D+ V+F+T Sbjct: 61 SGFEVCRRLRTFT-DVPVIFLTA 82 >gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii CDC 3083-94] gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii CDC 3083-94] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|170736115|ref|YP_001777375.1| CheA signal transduction histidine kinase [Burkholderia cenocepacia MC0-3] gi|169818303|gb|ACA92885.1| CheA signal transduction histidine kinase [Burkholderia cenocepacia MC0-3] Length = 769 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 645 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMEGWNAVRSDAFDLVVTDVDMPRMDG 704 Query: 62 IEL 64 IEL Sbjct: 705 IEL 707 >gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 230 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D Sbjct: 1 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 60 Query: 61 GIELAR 66 G+E+ R Sbjct: 61 GLEVVR 66 >gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] Length = 231 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK-VREEPFSLLLTDIVMPEMDGI 62 KIL+ +D+D MR+ + L + YEVV +NG A D V L++ D++MP+MDG Sbjct: 11 KILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPKMDGW 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E R ++ + ++ +T + + + +SKPF R LV V+ +L N Sbjct: 71 EACREIRKISK-VPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRRTN 129 >gi|114771142|ref|ZP_01448582.1| Response regulator containing CheY-like receiver [alpha proteobacterium HTCC2255] gi|114548424|gb|EAU51310.1| Response regulator containing CheY-like receiver [alpha proteobacterium HTCC2255] Length = 465 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+A+DD +R L +AL +AG +V + + + + + E ++++D+ P+ D Sbjct: 1 MDGTILVADDDRTIRTVLTQALTRAGCKVRATGSIETLWRWIDEGNGDVVISDVNFPDGD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ DL V+ I+ V ++ L KPF L+ L+++VN+ L Sbjct: 61 GLEMLPAIKRKRNDLPVIIISAQNTVITAIKASELGAYDYLPKPFDLKKLLSKVNKAL 118 >gi|92117964|ref|YP_577693.1| response regulator receiver domain-containing protein [Nitrobacter hamburgensis X14] gi|91800858|gb|ABE63233.1| response regulator receiver domain protein (CheY-like) [Nitrobacter hamburgensis X14] Length = 121 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED++ + L GY+ +NG A D VR+ L+L DI +P++ Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSNGFEALDLVRKLRPDLVLMDIQLPQVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+++ R + DP+L+ + + A A+ D + LSKP + + V R Sbjct: 61 GLDVTRWIKD-DPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRF 119 Query: 118 L 118 + Sbjct: 120 V 120 >gi|91794642|ref|YP_564293.1| response regulator receiver [Shewanella denitrificans OS217] gi|91716644|gb|ABE56570.1| response regulator receiver [Shewanella denitrificans OS217] Length = 120 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 6/122 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ I++ +D +R+ + AL AGY + +G A K+ +L+++D+ MP MD Sbjct: 1 MSKTIMIVDDSASLRQVVSIALKGAGYNTIEACDGVDALKKLNGAAVNLIISDVNMPNMD 60 Query: 61 GIELARRATELDPDLK----VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GI + + +L P K +M T A + A A V+ KPF + ++ V + Sbjct: 61 GISMVKEVKKL-PAHKFTPIIMLTTESQADKKSEGQAAGARAWVV-KPFQPQQMLAAVAK 118 Query: 117 LL 118 L+ Sbjct: 119 LI 120 >gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|30249232|ref|NP_841302.1| two-component hybrid sensor and regulator [Nitrosomonas europaea ATCC 19718] gi|30180551|emb|CAD85161.1| two-component hybrid sensor and regulator [Nitrosomonas europaea ATCC 19718] Length = 1713 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +++ +D +R+ + L + GYE++ +G A +RE +++L DI MP MDG EL Sbjct: 1596 VMIVDDSLTVRKVTSRLLERQGYEILIAKDGVGALQLLRETTPAIMLVDIEMPHMDGFEL 1655 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RA +P L + I ++ + + V + KP+ +L+ + RL+ Sbjct: 1656 I-RAVRDNPQLHTLPIIIISSRTADKHRKVAEELGVNEFMGKPYQEEELLYHIERLI 1711 >gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 238 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + +NG +A DK RE ++ D++MP MDG Sbjct: 13 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 72 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L RR D +F+T A + L D ++KPF L ++V + Sbjct: 73 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 125 Query: 117 LL 118 +L Sbjct: 126 IL 127 >gi|148264792|ref|YP_001231498.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398292|gb|ABQ26925.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 452 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 58/119 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L +AL +GY+V +GA A + E+ F LLL D+ +P+ DG++ Sbjct: 5 KILVVDDEPLLGEPLKRALESSGYQVRLAQSGADALQALTEDSFDLLLEDLGLPDADGLD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + P + + +TG + + L+KPF + L ++ ++ + Sbjct: 65 IMGEVLGKTPYCRALVMTGNGTIEKAVKAMKMGAFDFLTKPFTMETLFQKLQSVMEFRQ 123 >gi|117926854|ref|YP_867471.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117610610|gb|ABK46065.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 564 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 12/110 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD L + L K G++V + NG + +E L+L DI MP M+G E Sbjct: 2 KILIVDDDRINSTILTRLLEKDGHKVFTAPNGQRGVELFSDERPDLVLMDIRMPLMNGYE 61 Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPK-----NAKVLSKPFH 106 ARR L P+ + ++F+T A+ D K L+KPF+ Sbjct: 62 AARRIKSLSPNRFVPIIFLT-----AVTDDEGLAKCIDAGGDDFLTKPFN 106 >gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70] gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|312887562|ref|ZP_07747156.1| two component transcriptional regulator, AraC family [Mucilaginibacter paludis DSM 18603] gi|311299932|gb|EFQ77007.1| two component transcriptional regulator, AraC family [Mucilaginibacter paludis DSM 18603] Length = 1363 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED++D R F+ L + Y+V+ NG + K L+++D++MP +DG+EL Sbjct: 1105 ILIVEDNEDFRFFMRDNL-QQHYKVIEATNGLEGWQKALACHPELIVSDVMMPYLDGLEL 1163 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R + + + V+ +T + A + L+KPF L + LLT+ Sbjct: 1164 SRKLKTDKRTNHIPVILLTASSGEAKQLECLKSGANDYLNKPFSFEILNVRIKNLLTL 1221 >gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70] gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|308274683|emb|CBX31282.1| hypothetical protein N47_E47940 [uncultured Desulfobacterium sp.] Length = 146 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 13/128 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ DM FL L G+ V+ NG K R+ P +L++ D++M E GI++ Sbjct: 15 ILVVDDELDMLIFLSNLLMAEGFTVIEAKNGTEGITKARKNPPALIILDVMMSEESGIQI 74 Query: 65 ARRATELDPDLKVMFITGFAAV------------ALNPDSNAPKNAKVLSKPFHLRDLVN 112 R + D LK + + +A+ + P + P+ L KP +L+N Sbjct: 75 Y-RLLKFDKQLKRIPVIMLSAIDRDTFSHYQKFESSQPGQSVPEPEAFLEKPPEAEELIN 133 Query: 113 EVNRLLTI 120 V L ++ Sbjct: 134 IVLELTSM 141 >gi|308050681|ref|YP_003914247.1| response regulator receiver modulated metal dependent phosphohydrolase [Ferrimonas balearica DSM 9799] gi|307632871|gb|ADN77173.1| response regulator receiver modulated metal dependent phosphohydrolase [Ferrimonas balearica DSM 9799] Length = 341 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 24 KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR--ATELDPDLKVMFIT 81 KA Y++ NG +A V+ P L+L DI+MPEMDG+E+ RR A + + V+F+T Sbjct: 26 KADYKIKVALNGPTALKIVQASPPDLILLDIMMPEMDGLEVCRRLKAQPMTSPIPVIFVT 85 Query: 82 GFAAVALNPDSNAPKNAKVLSKP 104 V+ A L+KP Sbjct: 86 ALGEVSDEAAGLAVGAVDYLTKP 108 >gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|306818188|ref|ZP_07451919.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|304649152|gb|EFM46446.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 229 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I EDD ++R ++ LG G+E + C + + ++ + L+L DI++P DGI++ Sbjct: 2 IYFVEDDRNIRDLVVYTLGSTGFEALGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQI 61 Query: 65 ARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR A D+ ++ +T A S ++KPF + +LV+ V +L Sbjct: 62 LRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVL 117 >gi|296272738|ref|YP_003655369.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096912|gb|ADG92862.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 236 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEV-VSCN--NGASAYDKVREEP--FSLLLTDIVMPE 58 K+LL ED++D R L L EV ++C+ G Y+K E F L+LTDI MP Sbjct: 7 KVLLVEDEEDAREILSFYLDTVFDEVEIACDGEEGFKLYEKAHNENKIFDLVLTDIQMPN 66 Query: 59 MDGIELARRATELDPDLKVMFITGF 83 MDG+ + + T ++ D K + ++ + Sbjct: 67 MDGLTMIEKITNINEDQKFIIVSAY 91 >gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 236 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + L + KAG+ VV+ +G + Y+ E L++ D+++PEMDGIE Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + ++ + D+ ++ +T + L D ++KPF R++V + Sbjct: 63 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADD-------YMTKPFSPREVVARIKA 115 Query: 117 LL 118 +L Sbjct: 116 IL 117 >gi|290973017|ref|XP_002669246.1| 3',5'-cyclic-nucleotide phosphodiesterase regA [Naegleria gruberi] gi|284082791|gb|EFC36502.1| 3',5'-cyclic-nucleotide phosphodiesterase regA [Naegleria gruberi] Length = 842 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 2/66 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 +K+L+ +DD R+ L K L + G++V + G A + +REE + LLL D++MP+MD Sbjct: 90 KKVLVVDDDRVARQVLTKLLEQLGFQVKAVEGGKQALEVLREEGNNYHLLLVDVLMPDMD 149 Query: 61 GIELAR 66 G++L + Sbjct: 150 GLQLLK 155 >gi|241764781|ref|ZP_04762789.1| CheA signal transduction histidine kinase [Acidovorax delafieldii 2AN] gi|241365711|gb|EER60407.1| CheA signal transduction histidine kinase [Acidovorax delafieldii 2AN] Length = 2042 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D +RR + L + GY V +G A ++++EE +++L+DI MP MDG +L Sbjct: 1919 VLVVDDSITVRRVTQRLLQREGYRVALAADGLQALERLQEERPTVVLSDIEMPRMDGFDL 1978 Query: 65 AR--RATELDPDLKVMFIT 81 AR RA DL ++ IT Sbjct: 1979 ARNIRADGALRDLPIIMIT 1997 >gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ + F+ + L +AGY+V +G S E F L++ D+++P M+GI Sbjct: 2 KLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGIA 61 Query: 64 LARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + ++ +T + V DS A L KPF +L+ + LL Sbjct: 62 VCKALRQQQLTTPILMLTALGSTENVVAGLDSGAD---DYLVKPFKQAELLARIRSLLRR 118 Query: 121 KN 122 N Sbjct: 119 NN 120 >gi|239628090|ref|ZP_04671121.1| yesN [Clostridiales bacterium 1_7_47_FAA] gi|239518236|gb|EEQ58102.1| yesN [Clostridiales bacterium 1_7_47FAA] Length = 498 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 K+++A+D+ +R L + ++ C NG AYD + +E ++LTDI MP M Sbjct: 3 KLIIADDERLIREALSTTINWKDLDIELTGICRNGIEAYDMILDESPDIVLTDIRMPGMS 62 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G++L RR +E L+ + ++G+ Sbjct: 63 GLDLIRRTSEAGIPLQFILLSGYG 86 >gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +D+ ++ L L GYEV +NG Y+ + LL+ D ++P GIE Sbjct: 2 KILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSYDLLILDWMLPNKPGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + V+F+T + L D+ A L KPF LR+L+ V LL Sbjct: 62 ICQALRSQGNTTPVLFLTAKDTLNDRVLGLDAGA---DDYLVKPFELRELLARVRALL 116 >gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 227 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 15/119 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +DD +R + AL +A ++V++ +G A E L++ DI +PE+DG E Sbjct: 2 KILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGFE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + RR + ++ ++F+T + L D ++KPF R+LV + Sbjct: 62 VCRRIRQRS-EVPILFLTARDDEVDCILGLELGADD-------YVTKPFSPRELVARIK 112 >gi|119492435|ref|ZP_01623756.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC 8106] gi|119453101|gb|EAW34270.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC 8106] Length = 377 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D D R L + L GYEV NG A V+ P L+L DI MP +DG E+ Sbjct: 13 ILIVDDLPDNLRLLSETLSDRGYEVQCAINGKLALMAVQNAPPDLILLDIKMPGLDGYEV 72 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ ++ V+F++ V + ++KPF + +++ V LTI Sbjct: 73 CAELKSQVSTSNIPVIFLSALDDVFDKVKAFRVGGVDYITKPFQVEEVLARVENQLTI 130 >gi|172062715|ref|YP_001810366.1| CheA signal transduction histidine kinase [Burkholderia ambifaria MC40-6] gi|171995232|gb|ACB66150.1| CheA signal transduction histidine kinase [Burkholderia ambifaria MC40-6] Length = 769 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 645 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMDGWNAVRSDAFDLVVTDVDMPRMDG 704 Query: 62 IELARRATELDPDLK---VMFIT 81 IEL DP LK VM ++ Sbjct: 705 IELV-TLIRSDPALKRVPVMIVS 726 >gi|150377711|ref|YP_001314306.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150032258|gb|ABR64373.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 140 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 52/116 (44%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++ + EDD MR+ + + L G+ + + + F ++ DI + M GI Sbjct: 23 REVAVVEDDPSMRKSVARLLNAHGFATEVYASAEAFLSCASQNRFGCIVLDIHLSGMSGI 82 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R + D +KV+FIT L ++ L KPF L+ VNR L Sbjct: 83 ELWHRLKDTDFRIKVIFITALDDGVLEAEAMKAGCVAYLHKPFPADALIGAVNRAL 138 >gi|77460200|ref|YP_349707.1| histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384203|gb|ABA75716.1| histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 778 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+ + LGK G +VV +G A D++ + F L+L D MP MDG E Sbjct: 656 RVLLVEDNPVNQLVAKGMLGKLGCDVVVAAHGVEALDQLEHDEFDLVLMDCNMPVMDGYE 715 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 +R R + P L ++ +T A A + L+KPF +L Sbjct: 716 ASRQIRQSGRWPHLPIVALTANAMSEERERCRAAGMSDYLAKPFRREEL 764 >gi|71733455|ref|YP_275535.1| response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484911|ref|ZP_05638952.1| response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71554008|gb|AAZ33219.1| response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325120|gb|EFW81189.1| response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330889054|gb|EGH21715.1| response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330986495|gb|EGH84598.1| response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011070|gb|EGH91126.1| response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 568 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + + G+ V+S NG A + E L+L D +MP MDG E Sbjct: 10 ILIADDSASDRLLLSTIVARQGHRVLSAGNGVEAVAIFKAESPQLILMDAMMPVMDGFEA 69 Query: 65 ARRATELDPD--LKVMFITGFA---AVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 ARR + + + ++F+T A+A D+ +SKP++ L +N +NR Sbjct: 70 ARRIKAMSGESLVPIIFLTSLTEGEALARCLDAGGD---DFMSKPYNPLVLAAKLNAMNR 126 Query: 117 L 117 L Sbjct: 127 L 127 >gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 223 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|46578824|ref|YP_009632.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603569|ref|YP_967969.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] gi|46448236|gb|AAS94891.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563798|gb|ABM29542.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] gi|311232687|gb|ADP85541.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris RCH1] Length = 715 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 42/79 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +DDD R L+ L +GY V+ NG + D R E L+L D+ MP M G+E Sbjct: 7 RILCIDDDDADRMNLVAYLEDSGYIVLEAANGRAGLDVFRAEHPDLILVDLRMPVMGGME 66 Query: 64 LARRATELDPDLKVMFITG 82 + E P + V+ ++G Sbjct: 67 VVAHMREEAPGVPVIVVSG 85 >gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 835 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED+D R + L V + NG A D +R+ F L+ DI MPEMDGIE Sbjct: 577 EVLLVEDNDLNRTVAVGLLTALNQRVTAVTNGREAIDVLRDRDFELVFMDISMPEMDGIE 636 Query: 64 LA---RR--ATELDPDLKVMFITGFAAVA 87 RR A E ++F+T A A Sbjct: 637 ATWAIRRGEAGERARSTPIVFLTAHALAA 665 >gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|322419497|ref|YP_004198720.1| response regulator receiver protein [Geobacter sp. M18] gi|320125884|gb|ADW13444.1| response regulator receiver protein [Geobacter sp. M18] Length = 118 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M +++L+ +D +D+R L + K G+ +V+ NG A +K RE + + DI MP M Sbjct: 1 MKRRVLIVDDVEDIRLMLRYMVEKEGHVIVAEAANGIEAVEKYREHRPDVTIMDIDMPFM 60 Query: 60 DGIELARRATELDPDLKVMFIT-GFAAVALNPDSNAPKNAKVLSKPF 105 G+E AR E+ +++F + G + P + +L KPF Sbjct: 61 TGVEAAREIREMCDSPRIVFCSGGLSRFETPPQELRTGGSMLLRKPF 107 >gi|239996430|ref|ZP_04716954.1| flagellar regulatory protein C [Alteromonas macleodii ATCC 27126] Length = 445 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 53/112 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD +R L+ L YEVV+ + A + L+++DI M EM G+ L Sbjct: 6 ILIVEDDAGLREALLDTLLLGNYEVVAADCAEEALIVLSSRSVDLVVSDIQMGEMSGLTL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + P++ V+ +T +A + + LSKPF L+N V R Sbjct: 66 LKSIKTKYPNMPVLLMTAYATIDDAVQAMRDGATDYLSKPFAPEVLLNLVGR 117 >gi|291295294|ref|YP_003506692.1| CheA signal transduction histidine kinase [Meiothermus ruber DSM 1279] gi|290470253|gb|ADD27672.1| CheA signal transduction histidine kinase [Meiothermus ruber DSM 1279] Length = 911 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 39/60 (65%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D +R+ + + L KAG++VV+ +G A + + ++PF ++TD+ MP M G EL Sbjct: 797 VLLVDDSLSVRKVVAQMLRKAGHQVVTAADGQEALELLEQQPFQAVVTDLEMPRMSGFEL 856 >gi|298528665|ref|ZP_07016069.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512317|gb|EFI36219.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] Length = 127 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ++ +D +R L + L + G+ V +C NG A +K + L+ DI MP MDGIE Sbjct: 7 MVVDDSLITQRKLSQLLEELGHSVAGTCVNGQQACEKYIQLKPDLVTMDITMPVMDGIEA 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++ E DP+ V+ +T D+ + KPF+ ++ +N+++ Sbjct: 67 TKKIIESDPEAVVVMVTSHGQKQTVIDAIGAGAKGYILKPFYRDNVAQTLNKVI 120 >gi|253700974|ref|YP_003022163.1| PAS/PAC sensor protein [Geobacter sp. M21] gi|251775824|gb|ACT18405.1| putative PAS/PAC sensor protein [Geobacter sp. M21] Length = 381 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 39/68 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED L + L + GY V NGA A +++E P +L+L+D+VMP MDG E+ Sbjct: 17 ILVVEDSAIQAEMLKRMLVREGYTVKVARNGAEALVRMQELPPALVLSDVVMPVMDGYEM 76 Query: 65 ARRATELD 72 R + D Sbjct: 77 CRAIKDTD 84 >gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 21/126 (16%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 61 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI----- 108 Query: 117 LLTIKN 122 L IKN Sbjct: 109 -LRIKN 113 >gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EDL933] gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. Sakai] gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EC4024] gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK2000] gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK966] gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. EC1212] gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. G5101] gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. USDA 5905] gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. LSU-61] gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1125] gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1044] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|163802608|ref|ZP_02196500.1| flagellar basal-body rod protein B [Vibrio sp. AND4] gi|159173691|gb|EDP58510.1| flagellar basal-body rod protein B [Vibrio sp. AND4] Length = 308 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 12/95 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDI 54 +++L+A+D R+ + +A+ G+EVVS +G AY+K+ E + +L+++DI Sbjct: 182 RRVLIADDSTVARKQVERAITSIGFEVVSAKDGKEAYNKLLEMAQEGDICDQIALVISDI 241 Query: 55 VMPEMDGIELA---RRATELDPDLKVMFITGFAAV 86 MPEMDG L RR EL +L V+ + + V Sbjct: 242 EMPEMDGYTLTAEIRRNAELK-NLYVILHSSLSGV 275 >gi|153948861|ref|YP_001401729.1| RcsB family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|152960356|gb|ABS47817.1| sensor kinase protein RcsC [Yersinia pseudotuberculosis IP 31758] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 828 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 887 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 888 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 934 >gi|311746799|ref|ZP_07720584.1| DNA-binding response regulator, Fis family [Algoriphagus sp. PR1] gi|126578480|gb|EAZ82644.1| DNA-binding response regulator, Fis family [Algoriphagus sp. PR1] Length = 123 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +D+ ++R L + L + GYEV+S + V ++ +L+ D+ +P+ +G Sbjct: 3 NNVILVVDDELEIRALLTRFLARKGYEVISAGTLSEGRKLVDQKHPNLIFLDVNLPDGNG 62 Query: 62 I-ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 I EL + ++E D L+V+ ++ F ++ LSKPF+L L + + +T Sbjct: 63 IKELKKWSSEFDW-LQVIMMSAFDHQEARDEAFDSGAMYFLSKPFNLAKLEQVIQKKITK 121 Query: 121 KN 122 N Sbjct: 122 NN 123 >gi|154252838|ref|YP_001413662.1| histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156788|gb|ABS64005.1| histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 539 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D R+ L G + NG A ++ +PF L+L D+ MP M+G+E Sbjct: 403 VLLVDDHPLNRKVARLFLEPLGIAITEAENGEEALRWLQTQPFDLVLLDMHMPVMNGMET 462 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLLTIK 121 +P ++ + + A +L PD++ ++ + KP RDL+ E+ R+L K Sbjct: 463 LAHIRAHEPHIRDLPVIALTADSLGPDNSRYRDFGADGYVGKPMDHRDLILEIGRVLEEK 522 Query: 122 N 122 + Sbjct: 523 H 523 >gi|159899811|ref|YP_001546058.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159892850|gb|ABX05930.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 692 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 ++L +D+ +R + L + G V ++G SA RE + L+L D+ MP+ +GI Sbjct: 571 VMLIDDEPAVRMVTERMLQRLGLTVQGFSDGESAIKVFREHAHEYQLVLLDLTMPQFNGI 630 Query: 63 ELARRATELDPDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + A + D+ ++ ++G++ + L+P N A L KPF L DL VN + +K Sbjct: 631 DTAHGLRAIRADVPIVLMSGYSVDSMLDPLLNDGL-AGFLQKPFTLGDLQRTVNSVSALK 689 >gi|34498960|ref|NP_903175.1| two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34104809|gb|AAQ61166.1| probable two-component response regulator [Chromobacterium violaceum ATCC 12472] Length = 402 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ILL ED R F+ + + + GY S NG A + R + L+L DI+MPEMDG++ Sbjct: 20 ILLVEDSATNRYFIEQFIQELGYRCASATNGVEAVEYCRNQVPDLVLMDIIMPEMDGLQ 78 >gi|33596125|ref|NP_883768.1| chemotaxis protein CheY [Bordetella parapertussis 12822] gi|33601524|ref|NP_889084.1| chemotaxis protein CheY [Bordetella bronchiseptica RB50] gi|33573128|emb|CAE36773.1| chemotaxis protein CheY [Bordetella parapertussis] gi|33575960|emb|CAE33039.1| chemotaxis protein CheY [Bordetella bronchiseptica RB50] Length = 126 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+A+D MR + AL AG++VV+ ++G A + + + L+++D MP M Sbjct: 1 MTARILVADDSATMRMIVQAALTGAGWQVVTASDGKQALELAQAQAVDLVVSDWNMPVMG 60 Query: 61 GIELAR--RATELDPDLKVMFIT 81 G++L R R DL V+ +T Sbjct: 61 GLDLIRGLRGQARYQDLPVLVLT 83 >gi|22126848|ref|NP_670271.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis KIM 10] gi|108806928|ref|YP_650844.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Antiqua] gi|108812920|ref|YP_648687.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Nepal516] gi|149366792|ref|ZP_01888826.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis CA88-4125] gi|218928376|ref|YP_002346251.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis CO92] gi|270487159|ref|ZP_06204233.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|21959879|gb|AAM86522.1|AE013898_5 sensor for ctr capsule biosynthesis [Yersinia pestis KIM 10] gi|108776568|gb|ABG19087.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Nepal516] gi|108778841|gb|ABG12899.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Antiqua] gi|115346987|emb|CAL19878.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis CO92] gi|149291166|gb|EDM41241.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis CA88-4125] gi|270335663|gb|EFA46440.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] Length = 957 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 836 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 895 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 896 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 942 >gi|115360260|ref|YP_777398.1| CheA signal transduction histidine kinases [Burkholderia ambifaria AMMD] gi|115285548|gb|ABI91064.1| CheA signal transduction histidine kinase [Burkholderia ambifaria AMMD] Length = 769 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 645 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMDGWNAVRSDAFDLVVTDVDMPRMDG 704 Query: 62 IELARRATELDPDLK---VMFIT 81 IEL DP LK VM ++ Sbjct: 705 IELV-TLIRSDPALKRVPVMIVS 726 >gi|134297062|ref|YP_001120797.1| two component sigma54 specific Fis family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140219|gb|ABO55962.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia vietnamiensis G4] Length = 451 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 58/115 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++ EDD +RR +++L AG++V + +A + E ++++DI +P G++ Sbjct: 6 QVIYIEDDALVRRASVQSLQLAGFDVAGFESAEAADKALVAENAGVIVSDIRLPGASGLD 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E PD+ V+ +TG +++ + + KPF L+ V R L Sbjct: 66 LLAQCRERVPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFAAERLIETVRRAL 120 >gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 713 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 10/125 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD D R F+ L + G V++ ++ A + E +L++DI MPEMDG Sbjct: 591 RVLVVDDDTDSRDFIAFVLEQDGAFVIAVSSAYEALQTLAEIKPDVLVSDIGMPEMDGYM 650 Query: 64 LARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 L + L P+ + + +T FA N D A LSKP + +L+ + R Sbjct: 651 LIHQVRTLIPEQGGRIPAIALTAFAR---NDDQQEALKAGFQMHLSKPVNPEELIAAITR 707 Query: 117 LLTIK 121 ++ K Sbjct: 708 IVETK 712 >gi|330987803|gb|EGH85906.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 763 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F L + G++V+ + A A ++ P F ++ +DI MP M G+ Sbjct: 642 VLMVEDNQDIGTFTRPMLEQLGFQVLWVKSAAEALHELSGNPENFHVVFSDIAMPGMSGL 701 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL P + V+ TG++ + +L KP+ DL ++R ++ Sbjct: 702 ELYAEIEARYPWMPVVLTTGYSTEFATIAKDEAHRFDLLQKPYSREDLAAILHRAVS 758 >gi|330953754|gb|EGH54014.1| response regulator receiver:ATP-binding region, ATPase-like:stage II sporulation E [Pseudomonas syringae Cit 7] Length = 568 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + + G+ V+S NG A + E L+L D +MP MDG E Sbjct: 10 ILIADDSASDRLLLSTIVARQGHRVLSAANGVEAVAIFKAESPQLILMDAMMPVMDGFEA 69 Query: 65 ARRATELDPD--LKVMFITGFA---AVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNR 116 ARR L + + ++F+T A+A D+ +SKP++ L +N +NR Sbjct: 70 ARRIKALTGESLVPIIFLTSLTEGEALARCLDAGGD---DFMSKPYNPLVLAAKLNAMNR 126 Query: 117 L 117 L Sbjct: 127 L 127 >gi|330448225|ref|ZP_08311873.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492416|dbj|GAA06370.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 316 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 17/130 (13%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---------KVREEPFSLLLTD 53 KIL+ +D R + L + G EV+ +NG AYD K + ++ TD Sbjct: 183 HKILIVDDSPTARNLIKSTLMQLGIEVIEASNGQQAYDLLDRWCHEGKTVTDEILMMFTD 242 Query: 54 IVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR---DL 110 MPEMDG L + DP + ++IT +L+ N KV F + DL Sbjct: 243 AEMPEMDGYRLTHKVRH-DPRMSSLYIT--LNTSLSGSFNEAMTEKVGCNKFISKFQPDL 299 Query: 111 VNEV--NRLL 118 + EV NRLL Sbjct: 300 IVEVVHNRLL 309 >gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q ILL +D+ D+ FL L + GY+V ++G + ++ L+L D++MP MDG Sbjct: 6 GQTILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQKVSPDLILMDVMMPRMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 IE A + D LK I + A + A A ++KP R LV++V LL Sbjct: 66 IE-ACQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALL 124 >gi|323484985|ref|ZP_08090339.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum WAL-14163] gi|323692815|ref|ZP_08107042.1| transcriptional regulatory protein CutR [Clostridium symbiosum WAL-14673] gi|323401727|gb|EGA94071.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum WAL-14163] gi|323503129|gb|EGB18964.1| transcriptional regulatory protein CutR [Clostridium symbiosum WAL-14673] Length = 225 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ ED+ + ++++L + Y V C +G A + + E + L+L D+ +P DG+ + Sbjct: 3 LLVIEDERALCETIVRSLRRQAYSVDCCYDGEKAVELLGVERYDLVLLDLNLPGKDGMTV 62 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R + D + KV+ ++ V + L+KPFHL +L + R LT++ Sbjct: 63 LRTLRQTDRETKVLILSARGEVEDKVEGLDAGANDYLAKPFHLAELEARI-RSLTLRQ 119 >gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 235 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ + L L +AG+E + N+G Y+ E SL++ D+++P MD Sbjct: 1 MLKKILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPSMD 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G+E+ + + + ++ +T + L D ++KPF R++V Sbjct: 61 GVEVCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADD-------YMTKPFSPREVVAR 113 Query: 114 VNRLL 118 + +L Sbjct: 114 IKAVL 118 >gi|323175873|gb|EFZ61467.1| TMAO reductase sytem sensor TorS [Escherichia coli 1180] Length = 904 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A + + ++ EPF+ L D +P++DGI Sbjct: 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQSLETLQNSEPFAAALVDFDLPDVDGI 732 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 733 TLARQLAQQYPSL---VLIGFSA 752 >gi|320015940|gb|ADV99511.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 828 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 887 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 888 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 934 >gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|289597208|ref|YP_003483904.1| response regulator receiver protein [Aciduliprofundum boonei T469] gi|289534995|gb|ADD09342.1| response regulator receiver protein [Aciduliprofundum boonei T469] Length = 115 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 13/123 (10%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D++++ + L + YEV++ NG + + L++ DI MP MD Sbjct: 1 MGIKILLVDDNEELLKLYSIFLKR--YEVITAKNGKEGVELYMKYNPDLVIMDIKMPVMD 58 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-----VLSKPFHLRDLVNEVN 115 GIE + E D D K++ T + D A K + V+ KPF R++++ + Sbjct: 59 GIEATKAIKEYDKDAKIIGATAY------HDKYAEKMLEAGALVVMKKPFKYREILDLIE 112 Query: 116 RLL 118 + + Sbjct: 113 KYI 115 >gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 234 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 15/119 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L+L D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 E+AR + + D+ ++ +T + L D ++KPF R+LV V Sbjct: 62 EVAREVRK-NHDMPIIMVTAKDSEIDKVLGLELGADD-------YVTKPFSNRELVARV 112 >gi|260867202|ref|YP_003233604.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O111:H- str. 11128] gi|257763558|dbj|BAI35053.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O111:H- str. 11128] Length = 914 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62 ++LL ED+ +R ++ L +G +VV+ N A + + ++ EPF+ L D +P++DGI Sbjct: 683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQSLETLQNSEPFAAALVDFDLPDVDGI 742 Query: 63 ELARRATELDPDLKVMFITGFAA 85 LAR+ + P L + GF+A Sbjct: 743 TLARQLAQQYPSL---VLIGFSA 762 >gi|255012829|ref|ZP_05284955.1| putative two-component system response regulator [Bacteroides sp. 2_1_7] Length = 561 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L A+D+ D+ + I L GYEVV +G A D +E+ F ++ D MP + G+E Sbjct: 52 RVLWADDEIDLLKPHILFLQDKGYEVVPVVSGQDAIDCCKEQSFDIIFLDENMPGLTGLE 111 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ P++ V+ +T ++ + K A L KP VN LL+IK Sbjct: 112 TLSHIKEIAPNVPVVMVTKSEEESIMNQAIGNKIADYLIKP------VNPNQLLLSIK 163 >gi|238022974|ref|ZP_04603400.1| hypothetical protein GCWU000324_02896 [Kingella oralis ATCC 51147] gi|237865782|gb|EEP66920.1| hypothetical protein GCWU000324_02896 [Kingella oralis ATCC 51147] Length = 121 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++I++ +D + +R + + G +EVV S NG A R+ ++ D+ MP+M Sbjct: 1 MSKRIMIVDDSNVIRNRISRGSGTMDFEVVASAANGEEAIALYRQHHPDVVTMDLTMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E + T LD + ++ ++ + A + L KPF +L +N +L Sbjct: 61 DGLECIYQLTSLDENANILVVSALSDKATGIKALQLGARGFLYKPFSDEELFQALNEML 119 >gi|257790535|ref|YP_003181141.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474432|gb|ACV54752.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 224 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 11/123 (8%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + + ++L Y V C++G A D + E F L++ D+ +P +DG+ Sbjct: 2 RILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPRIDGMT 61 Query: 64 LARRATELDPDLKVMFITGFAAV-----ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D + KV+ ++ V L+ +N L+KPFHL +L + R L Sbjct: 62 VLKALRKTDRETKVLILSARGKVFDKVTGLDAGAN-----DYLTKPFHLDELAARI-RSL 115 Query: 119 TIK 121 T++ Sbjct: 116 TLR 118 >gi|193215252|ref|YP_001996451.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193088729|gb|ACF14004.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1333 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPE 58 + + IL+ +D+ +R ++L GY+V++ NG A KV+E S + D++MP+ Sbjct: 1208 IGEHILVVDDEAPVREVTKESLQANGYDVITAENGEDAISKVQEATCAISAAIIDMMMPK 1267 Query: 59 MDGIELARRATELDPDLKVMFITG-FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +DG + + +P +K++ ++G F+ + +S +A L KP+ L+ ++ + Sbjct: 1268 LDGTSTIKLLRQTNPSIKIIAVSGLFSYKKVLTESGELVDA-FLQKPYTSEQLLGALHEV 1326 Query: 118 L 118 L Sbjct: 1327 L 1327 >gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W] gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W] Length = 223 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820] gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 15/115 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI 108 >gi|165924538|ref|ZP_02220370.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str. F1991016] gi|229841162|ref|ZP_04461321.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843267|ref|ZP_04463413.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Orientalis str. India 195] gi|229903349|ref|ZP_04518462.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Nepal516] gi|165923598|gb|EDR40730.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str. F1991016] gi|229679119|gb|EEO75222.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Nepal516] gi|229689614|gb|EEO81675.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Orientalis str. India 195] gi|229697528|gb|EEO87575.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Orientalis str. PEXU2] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 828 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 887 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 888 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 934 >gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759] gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759] Length = 224 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 8/123 (6%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I + EDD ++R + AL +GY V N S + K E+ L+L DI++P+MD Sbjct: 1 MAVHIYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSKTAEKVPDLVLLDIMLPDMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 G+E+ ++ +++ I A + + K + L+KPF + +L++ V Sbjct: 61 GLEIVKKLRSRPDTVRIPII---LVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVK 117 Query: 116 RLL 118 LL Sbjct: 118 ALL 120 >gi|209963689|ref|YP_002296604.1| hybrid phosphotransfer protein, HdpA [Rhodospirillum centenum SW] gi|31322722|gb|AAP22910.1| HdpA [Rhodospirillum centenum] gi|209957155|gb|ACI97791.1| hybrid phosphotransfer protein, HdpA [Rhodospirillum centenum SW] Length = 491 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-MDGI 62 +IL D D+ R L AL G+ V +G A + + PF LLL+D +P + G Sbjct: 364 RILRVAADTDLCRTLDDALAGGGHAVTPAADGYQALECLEAMPFDLLLSDARLPGGLSGA 423 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 LAR L PDL ++ + G A P P+ A VL PF DL Sbjct: 424 LLAREVRPLFPDLAIVLVAGGDAAVAAPAVLLPEEAPVLRLPFSPDDL 471 >gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 2457T] gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 2457T] gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor [Shigella flexneri 2002017] gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T] gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|77457283|ref|YP_346788.1| CheA Signal transduction histidine Kinases (STHK) [Pseudomonas fluorescens Pf0-1] gi|77381286|gb|ABA72799.1| putative chemotaxis-related two-component system, sensor kinase [Pseudomonas fluorescens Pf0-1] Length = 764 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D +R K L GY+V +G ++ +R E F LL+TDI MP MDG Sbjct: 640 RKRILVVDDSLTVRELQRKLLLNRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDG 699 Query: 62 IELA---RRATELDPDLKVMFIT 81 IEL RR L L VM ++ Sbjct: 700 IELVSLLRRDNRLQ-SLPVMVVS 721 >gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046] gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68] gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180] gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 117-3] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|331003039|ref|ZP_08326551.1| hypothetical protein HMPREF0491_01413 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413083|gb|EGG92458.1| hypothetical protein HMPREF0491_01413 [Lachnospiraceae oral taxon 107 str. F0167] Length = 534 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 4 KILLAEDDDDMRRFLIKALG--KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 KILL +D++++R+ +IK + + G+ VV NG A +K+ L+ TDI MP MD Sbjct: 6 KILLVDDEEEVRKSIIKKINWEEEGFLVVGDAENGVEALEKIENLNPDLVFTDIRMPYMD 65 Query: 61 GIELARRATELDPDLKVMFITGF 83 G+EL P +K M +GF Sbjct: 66 GLELINEINIRYPLIKSMIFSGF 88 >gi|312882562|ref|ZP_07742303.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369962|gb|EFP97473.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 441 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL +D+ D+ + L + L + Y+VVS N+G A + + +++++D+ MP MDG Sbjct: 18 KTLLLLDDEKDILKALTRIL-RFEYDVVSFNDGHEALKYLEDHDINIMISDMRMPTMDGA 76 Query: 63 ELARRATELDPDLKVMFITGFA 84 E +RA E P+ +TG++ Sbjct: 77 EFLKRAKEFCPNSIRFLLTGYS 98 >gi|307328135|ref|ZP_07607315.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306886254|gb|EFN17260.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 257 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +LL EDD +R + AL + G+ V + +G + + RE+ LLL D+++PE+DGI Sbjct: 21 HLLLVEDDKVIRNTVRMALERYGFTVFTAGDGLTGLEIFREKQPDLLLLDVMLPELDGIG 80 Query: 64 LARRATEL 71 L RR E Sbjct: 81 LCRRVREF 88 >gi|294775037|ref|ZP_06740566.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294451081|gb|EFG19552.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 227 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ + + L + + + + +G K E+ +L+ D++MP MDG E+ Sbjct: 6 VLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQKPDVLVADVMMPRMDGFEM 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + D V+F+T +A+ L KPF +++L+ + L+ Sbjct: 66 VRRIRQSDKATPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119 >gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR [Turicibacter sanguinis PC909] gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp. HGF1] gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR [Turicibacter sanguinis PC909] gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp. HGF1] Length = 226 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QKIL+ +DD ++ L AL GY V +N A +++ P L++ D++MP D Sbjct: 1 MSQKILVVDDDLEILEMLYDALNDEGYLVYKASNSFEARSQLKVNP-DLMILDVMMPGQD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 G E + + ++F+T + + A L+KPF LR+L Sbjct: 60 GFEFCKEIRSV-VSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLREL 108 >gi|262195508|ref|YP_003266717.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262078855|gb|ACY14824.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 128 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS-----AYDKVREEPFSLLLTDIVMP 57 ++L+A+DD MR L AL + G+ V + +G + E L+++D+ MP Sbjct: 2 HRVLIADDDPAMRGMLESALSRQGFSVETAASGEELLALLKTAQAEERTPHLVISDVCMP 61 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 M G+++ P L V+ IT F + + A +++ KPF L L + + Sbjct: 62 GMSGLDVLHHIRRELPQLPVLLITAFGDALTHRRAQALGAVELIDKPFDLTLLCSRAKHV 121 >gi|261415981|ref|YP_003249664.1| response regulator receiver modulated diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372437|gb|ACX75182.1| response regulator receiver modulated diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327269|gb|ADL26470.1| response regulator/GGDEF domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 289 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +KIL+ +DDD + + L GYEV+ C +G A + + P L+L D+ MP M+ Sbjct: 2 VEEKILIVDDDDVELKRDSEVLTSVGYEVIGCKSGTEALEYLNNNPVELVLLDVNMPGMN 61 Query: 61 GIELA---RRATELDPDLKVMFIT 81 G ++ R+ LD DL ++F+T Sbjct: 62 GYDVCLNIRKQFPLD-DLPIIFLT 84 >gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82] gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15] gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O83:H1 str. NRG 857C] gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 153-1] gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 16-3] gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|206562682|ref|YP_002233445.1| putative chemotaxis-related two component response regulator/histidine kinase [Burkholderia cenocepacia J2315] gi|198038722|emb|CAR54683.1| putative chemotaxis-related two component response regulator/histidine kinase [Burkholderia cenocepacia J2315] Length = 769 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 645 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMEGWNAVRSDAFDLVVTDVDMPRMDG 704 Query: 62 IEL 64 IEL Sbjct: 705 IEL 707 >gi|167762401|ref|ZP_02434528.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC 43183] gi|167699507|gb|EDS16086.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC 43183] Length = 923 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D++++R L+ Y V + NG Y+KV+ L+++DI+MPEM G E Sbjct: 666 KLLVIDDNEEIRTVLVDIFSPL-YTVDTACNGKEGYEKVKTMQPDLVISDIMMPEMTGTE 724 Query: 64 L-ARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L A+ ++ + V+ +T A + + KPF++R LV + N L+ + Sbjct: 725 LCAKIKNNIETCHIPVVLLTALGAPERELEGLRIGADIYVVKPFNMRRLVMQCNNLINTR 784 >gi|162418760|ref|YP_001605841.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Angola] gi|162351575|gb|ABX85523.1| sensor kinase protein RcsC [Yersinia pestis Angola] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 828 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 887 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 888 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 934 >gi|163747213|ref|ZP_02154568.1| two component transcriptional regulator, winged helix family protein [Oceanibulbus indolifex HEL-45] gi|161379488|gb|EDQ03902.1| two component transcriptional regulator, winged helix family protein [Oceanibulbus indolifex HEL-45] Length = 325 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYD--KVREEPFSLLLTDIVMPEMD 60 KIL +DD +R L +A Y ++ ++GA+A + +E F LL DI MPEMD Sbjct: 2 KILAVDDDPFIRELLPVVFREADYPHLTLADSGAAALELLATTKEQFDCLLLDIEMPEMD 61 Query: 61 GIELARRATELDP--DLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 GI L R LD D ++ +T + A A+ A N V +KPF ++D+ V+ Sbjct: 62 GITLCRHIRALDAYQDTPILMVTSRSDATAIERAFAAGANDYV-TKPFDVKDIATRVH 118 >gi|150003880|ref|YP_001298624.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|149932304|gb|ABR39002.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] Length = 227 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 55/114 (48%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ + + L + + + + +G K E+ +L+ D++MP MDG E+ Sbjct: 6 VLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQKPDVLVADVMMPRMDGFEM 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + D V+F+T +A+ L KPF +++L+ + L+ Sbjct: 66 VRRIRQSDKATPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119 >gi|150025145|ref|YP_001295971.1| two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] gi|149771686|emb|CAL43160.1| Probable two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] Length = 517 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D+ D+ + I L K Y + +CNNG A D +EE F ++ D MP M G+E Sbjct: 5 KILWVDDEIDLLKPHILFLEKKNYIITTCNNGRDAVDIFQEENFDIVFLDENMPGMSGLE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E + V+ IT + ++ K A L KP VN LL++K Sbjct: 65 TLAEIKEKKSSIPVIMITKSEEEHIMEEAIGSKIADYLIKP------VNPNQILLSLK 116 >gi|153954940|ref|YP_001395705.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347798|gb|EDK34334.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 224 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 41/63 (65%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+D+ + L + + GY+ C +G A +++++ F+L+L DI++P + G E Sbjct: 5 EILIVEDDNDINKILELIVKEQGYKATCCFSGTEAQLRLQQQSFNLILLDIMLPGLTGEE 64 Query: 64 LAR 66 L R Sbjct: 65 LLR 67 >gi|146282704|ref|YP_001172857.1| response regulator [Pseudomonas stutzeri A1501] gi|145570909|gb|ABP80015.1| response regulator [Pseudomonas stutzeri A1501] Length = 133 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 8/118 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L AL G+ V +NG A D + E SL++ D +MP M+G+EL Sbjct: 4 VLVVDDEYLIVEVLTLALEDVGFMVTQASNGKKALDALHREGLSLVVCDFMMPLMNGLEL 63 Query: 65 A---RRATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNRLL 118 A RR E V+ G A +A S AP +L KPF + ++ V L+ Sbjct: 64 AEEIRRHAEWSHIPIVLMSGGHAGLA----SQAPGLFDHILQKPFDVTKFIDIVIDLI 117 >gi|94266984|ref|ZP_01290632.1| PAS:Response regulator receiver:CHASE [delta proteobacterium MLMS-1] gi|93452318|gb|EAT02952.1| PAS:Response regulator receiver:CHASE [delta proteobacterium MLMS-1] Length = 875 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED+D R L L G+ V++ +NG A + R L+L D++MPE+DG+E Sbjct: 756 ILVAEDNDFNRLLLTDLLQNHGHRVLAASNGREAVEIYRSGQCQLILMDMMMPELDGLEA 815 Query: 65 ARRATELDPD 74 R L+ + Sbjct: 816 TRAIRRLEAE 825 >gi|38639718|ref|NP_943487.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae] gi|168998689|ref|YP_001687957.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae NTUH-K2044] gi|38016816|gb|AAR07837.1| SilR [Klebsiella pneumoniae] gi|238549704|dbj|BAH66055.1| silver resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 226 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G + Sbjct: 2 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + L KPF +L+ V LL Sbjct: 62 IIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197] gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|78063151|ref|YP_373059.1| CheA signal transduction histidine kinase [Burkholderia sp. 383] gi|77971036|gb|ABB12415.1| CheA signal transduction histidine kinase [Burkholderia sp. 383] Length = 769 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 645 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMEGWNAVRSDAFDLVVTDVDMPRMDG 704 Query: 62 IEL 64 IEL Sbjct: 705 IEL 707 >gi|86146655|ref|ZP_01064976.1| probable transcriptional regulator SyrB [Vibrio sp. MED222] gi|85835502|gb|EAQ53639.1| probable transcriptional regulator SyrB [Vibrio sp. MED222] Length = 221 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + L + L GY V + + G SA + ++ P L+L D+++P + GI+ Sbjct: 3 RVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSNPVDLVLLDVMLPNLSGIQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +ARR + ++ +T A D + ++KPF++ +L+ + +L Sbjct: 63 VARRICQRFAT-PILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVIL 116 >gi|163847240|ref|YP_001635284.1| metal dependent phophohydrolase [Chloroflexus aurantiacus J-10-fl] gi|222525081|ref|YP_002569552.1| response regulator receiver modulated metal dependent phosphohydrolase [Chloroflexus sp. Y-400-fl] gi|163668529|gb|ABY34895.1| metal dependent phophohydrolase [Chloroflexus aurantiacus J-10-fl] gi|222448960|gb|ACM53226.1| response regulator receiver modulated metal dependent phosphohydrolase [Chloroflexus sp. Y-400-fl] Length = 493 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++R F + L + Y+VV+ +G +A + + + F L+LTD+ MP +DGI Sbjct: 13 RILIVEDEVNIREF-CRLLLRRHYDVVAVGDGLAAIELLSTQTFDLVLTDLQMPNLDGIA 71 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L + RA L+ D VM T A V ++ ++KP L V L ++ Sbjct: 72 LVQYLRAHHLETDAVVM--TAHATVETAREALKLGALDYIAKPVDAEQLQKTVRTALELR 129 >gi|332159652|ref|YP_004296229.1| nitrogen regulation protein NR(I) protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318603746|emb|CBY25244.1| nitrogen regulation protein NR(I) [Yersinia enterocolitica subsp. palearctica Y11] gi|325663882|gb|ADZ40526.1| nitrogen regulation protein NR(I) protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858976|emb|CBX69335.1| nitrogen assimilation regulatory protein [Yersinia enterocolitica W22703] Length = 470 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 + + +DD +R L +AL AG + + G D + + +LL+DI MP MDG+ L Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCATFDTGNQVLDALATQTPDVLLSDIRMPGMDGLAL 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ + P L V+ +T + + + L KPF + + V V R ++ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 >gi|320107385|ref|YP_004182975.1| response regulator receiver protein [Terriglobus saanensis SP1PR4] gi|319925906|gb|ADV82981.1| response regulator receiver protein [Terriglobus saanensis SP1PR4] Length = 126 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ + L L +AG++ + +G SA + V ++L++D++M M GIE Sbjct: 12 RVLVADDEQVIANTLAIILNQAGFDARAVYSGESAIETVESFQPNMLISDVIMTGMTGIE 71 Query: 64 LARRATELDPDLKVMFITGFAAVA--LNPDSNAPKNAKVLSKPFHLRDLV 111 A P K++ +G AA A L ++L+KP H DL+ Sbjct: 72 AAIEIRNRLPKCKILLFSGQAATADLLEKARAQGHEFEILAKPVHPTDLL 121 >gi|300690102|ref|YP_003751097.1| sensor protein [Ralstonia solanacearum PSI07] gi|299077162|emb|CBJ49788.1| Sensor protein [Ralstonia solanacearum PSI07] Length = 995 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +L+AED R + + L G+ V +GA+A ++ E F LLTD MP +D Sbjct: 734 LGMHVLVAEDHPINRELIARQLRLLGHRVTLAEDGAAALQRLCETRFDALLTDCCMPRLD 793 Query: 61 GIELAR------RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G +LAR + T P L ++ IT + +A + KP L L + Sbjct: 794 GFDLARQIRQREQQTPSGPRLSILAITATTLAEEHARCHAVGMDGCVLKPTTLATLQEAL 853 Query: 115 NRLLTIK 121 +RL ++ Sbjct: 854 SRLWNLE 860 >gi|299144918|ref|ZP_07037986.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298515409|gb|EFI39290.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1346 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++D R F+ +L + Y V NG A++ ++EE L+++D++MP+MDG EL Sbjct: 1099 LLIVDDNEDFRIFMRYSL-ELQYRVKLAVNGKEAWEMMQEELPDLVISDVMMPQMDGNEL 1157 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + + + V+ +T + ++KPF++ LV + +L+ + Sbjct: 1158 CRLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIEL 1215 >gi|295693362|ref|YP_003601972.1| response regulator [Lactobacillus crispatus ST1] gi|295031468|emb|CBL50947.1| Response regulator [Lactobacillus crispatus ST1] Length = 238 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 41/68 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L YE V NNG + + F +L D+++P+++G+E Sbjct: 3 KILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNGLE 62 Query: 64 LARRATEL 71 +ARR ++ Sbjct: 63 IARRVRQV 70 >gi|283850719|ref|ZP_06368006.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] gi|283573962|gb|EFC21935.1| response regulator receiver protein [Desulfovibrio sp. FW1012B] Length = 127 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D MRR + L + G+ ++ ++G+SA++ + ++ +++D MP+M GI Sbjct: 8 RILVVDDFSTMRRIIKNILRQLGFNNIIEADDGSSAWETLNKDKIDFIISDWNMPKMPGI 67 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R R++E +L + +T A ++ K + + KPF L +++++ Sbjct: 68 ELLRKVRSSEEFAELPFLMVTAEAQQENIIEAVQAKVSNYIVKPFTAETLGQKIDKIF 125 >gi|312113438|ref|YP_004011034.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311218567|gb|ADP69935.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 231 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I L +DD ++ L L GY++++ +G SA+D + +P L + DI MP MDG+EL Sbjct: 4 IALVDDDRNILTSLRMLLEAEGYKILAYTDGVSAFDGITNDPPDLAILDIKMPRMDGMEL 63 Query: 65 ARRATELDPDLKVMFITG 82 RR + ++ V+F+T Sbjct: 64 LRRLRQ-KTEMPVIFLTS 80 >gi|261251935|ref|ZP_05944509.1| chemotaxis regulator CheY [Vibrio orientalis CIP 102891] gi|260938808|gb|EEX94796.1| chemotaxis regulator CheY [Vibrio orientalis CIP 102891] Length = 119 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL +D +R+ + L AGY+V + N+G A KV F ++++D+ MP M G E Sbjct: 3 KILAVDDSVSIRQMVSHTLRDAGYDVETANDGRDALSKVTAGKFDVVISDVNMPNMGGFE 62 Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E P K ++ +T + + L KPF+ L+ + R++ Sbjct: 63 LVKALRE-KPQYKFIPILMLTTETSTDKKQQGKSAGATGWLVKPFNPDTLLKTLKRVI 119 >gi|256838697|ref|ZP_05544207.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739616|gb|EEU52940.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 516 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L A+D+ D+ + I L GYEVV +G A D +E+ F ++ D MP + G+E Sbjct: 7 RVLWADDEIDLLKPHILFLQDKGYEVVPVVSGQDAIDCCKEQSFDIIFLDENMPGLTGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ P++ V+ +T ++ + K A L KP VN LL+IK Sbjct: 67 TLSHIKEIAPNVPVVMVTKSEEESIMNQAIGNKIADYLIKP------VNPNQLLLSIK 118 >gi|255693555|ref|ZP_05417230.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260620620|gb|EEX43491.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1355 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ ED+DD+R +L K Y V+ +G SA + ++++ L+++D++MP + G Sbjct: 1098 ERILIVEDNDDLRFYLKKTFASI-YTVIDKPDGESALEYLQDKSVDLIISDVMMPGIQGD 1156 Query: 63 ELARR 67 EL RR Sbjct: 1157 ELCRR 1161 >gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] Length = 240 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ +RR L L + +++ +G A D ++ +L D+++PE+DGIE Sbjct: 3 KILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLMLPELDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A R E D ++ +T + + KPF R++V V LL Sbjct: 63 VANRLREY-KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 116 >gi|197121826|ref|YP_002133777.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196171675|gb|ACG72648.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 408 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMDG 61 ++L+ +DD R L AL G+ VV+ + ++ EE F+L L+TD+VMPE+DG Sbjct: 272 RVLVVDDDTLARAMLADALSGRGFGVVAEQGALAGLLRLAEEIFTLDVLVTDVVMPEVDG 331 Query: 62 IELARRATEL--DPDLKVMFITG 82 EL RR ++ + DL ++ IT Sbjct: 332 GELVRRIRQVGGERDLPIVAITA 354 >gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489] gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|189464019|ref|ZP_03012804.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM 17393] gi|189438592|gb|EDV07577.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM 17393] Length = 1399 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED++D+ ++K LG A Y++ + +G A + V L+++D++MP MDGIE Sbjct: 1143 LLLVEDNEDLLALMVKLLG-AEYDICTATDGKEALEVVESADIDLIVSDVMMPVMDGIEF 1201 Query: 65 AR 66 + Sbjct: 1202 CK 1203 >gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42] gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42] Length = 231 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ EDD D+ L ++L ++GYEV++ +G A V + L++ DI+MP + Sbjct: 1 MTHRILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLV-NDSLDLVILDIMMPGIS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 GIE + + ++ ++F+T ++ + ++KPF +L Sbjct: 60 GIETCQHIRK-TSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEEL 108 >gi|114767142|ref|ZP_01446022.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Pelagibaca bermudensis HTCC2601] gi|114540704|gb|EAU43772.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Roseovarius sp. HTCC2601] Length = 440 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 53/103 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A + + ++++DI MP MDGI+ Sbjct: 2 KIAIVDDEKDMRQSISQWLALSGYDTEAFGSAEEALGALGTDYPGIVISDIKMPGMDGIQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 ++ D L V+ ITG V + ++ L KPF+ Sbjct: 62 FLKKLMGADSALPVIMITGHGDVPMAVEAMRIGAFDFLEKPFN 104 >gi|38347964|ref|NP_941213.1| DNA-binding transcriptional activator CusR [Serratia marcescens] gi|156936338|ref|YP_001440254.1| DNA-binding transcriptional activator CusR [Cronobacter sakazakii ATCC BAA-894] gi|157412123|ref|YP_001481464.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC O1] gi|170766561|ref|ZP_02901014.1| transcriptional activator protein CopR [Escherichia albertii TW07627] gi|218697185|ref|YP_002404852.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989] gi|237728472|ref|ZP_04558953.1| SilR [Citrobacter sp. 30_2] gi|238910394|ref|ZP_04654231.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|295697874|ref|YP_003602531.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|296105224|ref|YP_003615370.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|38259441|emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance) [Serratia marcescens] gi|99867148|gb|ABF67793.1| SilR [Escherichia coli APEC O1] gi|156534592|gb|ABU79418.1| hypothetical protein ESA_04238 [Cronobacter sakazakii ATCC BAA-894] gi|170123999|gb|EDS92930.1| transcriptional activator protein CopR [Escherichia albertii TW07627] gi|218353917|emb|CAV00347.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli 55989] gi|226909950|gb|EEH95868.1| SilR [Citrobacter sp. 30_2] gi|295059683|gb|ADF64421.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059986|gb|ADF64723.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|322614029|gb|EFY10965.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617921|gb|EFY14814.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625465|gb|EFY22291.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629930|gb|EFY26703.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632181|gb|EFY28932.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636468|gb|EFY33175.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322644676|gb|EFY41212.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651301|gb|EFY47685.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652785|gb|EFY49124.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659087|gb|EFY55339.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663211|gb|EFY59415.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668698|gb|EFY64851.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674498|gb|EFY70591.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678296|gb|EFY74357.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682447|gb|EFY78468.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684160|gb|EFY80166.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192284|gb|EFZ77516.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196289|gb|EFZ81441.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201437|gb|EFZ86503.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206453|gb|EFZ91414.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212045|gb|EFZ96872.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216950|gb|EGA01673.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220317|gb|EGA04771.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224364|gb|EGA08653.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228292|gb|EGA12423.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233440|gb|EGA17533.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237098|gb|EGA21165.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243687|gb|EGA27703.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246071|gb|EGA30058.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250847|gb|EGA34725.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257657|gb|EGA41343.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261866|gb|EGA45433.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267742|gb|EGA51224.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268622|gb|EGA52089.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323974959|gb|EGB70069.1| heavy metal response regulator [Escherichia coli TW10509] Length = 226 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G + Sbjct: 2 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + L KPF +L+ V LL Sbjct: 62 IIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|93004928|ref|YP_579365.1| LytR/AlgR family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92392606|gb|ABE73881.1| transcriptional regulator, LytR/AlgR family [Psychrobacter cryohalolentis K5] Length = 245 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +I++ +D+ R L++ + ++G+EVV+ G A V+ + ++L DI MPEMDG+ Sbjct: 2 RIVVCDDEPLARERLVRIVKESGHEVVAQAKTGIEAISAVKSQQPDIILLDIRMPEMDGV 61 Query: 63 ELARRATELDPDLKVMFITGFAAVAL 88 + A+ +L ++F+T + A+ Sbjct: 62 QCAQELAKLQHPPAIIFVTAYDHYAI 87 >gi|330894438|gb|EGH27099.1| two-component sensor histidine kinase [Pseudomonas syringae pv. mori str. 301020] Length = 787 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 664 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPGINGTDL 723 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 724 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 764 >gi|330874548|gb|EGH08697.1| two-component sensor histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 787 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 664 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPGINGTDL 723 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 724 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 764 >gi|323700853|ref|ZP_08112765.1| response regulator receiver protein [Desulfovibrio sp. ND132] gi|323460785|gb|EGB16650.1| response regulator receiver protein [Desulfovibrio desulfuricans ND132] Length = 116 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +D+ ++ + + LG + +NG SA + + + + + D+ MP++ G+E Sbjct: 2 KVLLVDDEVELVSAMAERLGFRDVDADWTDNGESALEMADKTAYDVAVLDMKMPKLSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L R E PD+K +F++G + + + + L KP L +LV + ++ Sbjct: 62 LMERLAERHPDMKFIFLSGHGSES-DFKAGCAAGCNYLIKPIQLEELVALIRKV 114 >gi|320322978|gb|EFW79068.1| two-component sensor histidine kinase [Pseudomonas syringae pv. glycinea str. B076] gi|320329899|gb|EFW85887.1| two-component sensor histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 755 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 632 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPGINGTDL 691 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 692 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 732 >gi|298486945|ref|ZP_07004998.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158507|gb|EFH99574.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 534 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 ++IL+ ED D+ L GY N A K + LL TD++MP M+ Sbjct: 410 ERILIVEDRPDVAELAKMVLDDYGYICEIVLNAREALKKFESGSRYDLLFTDLIMPGGMN 469 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LAR P +KV+ TG+A ++ V+SKP +DL +V ++L Sbjct: 470 GVMLAREVRRRYPKIKVLLTTGYAESSIERTDIGGSEFDVVSKPCMPQDLARKVRQVL 527 >gi|295690170|ref|YP_003593863.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] gi|295432073|gb|ADG11245.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] Length = 125 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ ED++ + L GYE + G SA R+ L+L DI +PE+ Sbjct: 1 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARDNKPDLILMDIQLPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ + E D +L + + A A+ D + +SKP + + + RL Sbjct: 61 GLEVTKWLKE-DEELAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRL 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|260642820|ref|ZP_05417466.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260620414|gb|EEX43285.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1343 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +Q+IL+ ED+D++R +L + L + + + C+NG A + E L+++DI+MPEM G Sbjct: 1075 SQRILIVEDNDELRNYLSQTLSE-DHLIQVCSNGKEALTVIPEYKPDLVISDIMMPEMRG 1133 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + + +++ I ALN + + ++ + KPF++ L ++ Sbjct: 1134 DELCQ---AIKSNIETSHIPVILLTALNNEKDILSGLRIGADEYVLKPFNIGILKATISN 1190 Query: 117 LL 118 LL Sbjct: 1191 LL 1192 >gi|237808147|ref|YP_002892587.1| two component, sigma54 specific, transcriptional regulator, Fis family [Tolumonas auensis DSM 9187] gi|237500408|gb|ACQ93001.1| two component, sigma54 specific, transcriptional regulator, Fis family [Tolumonas auensis DSM 9187] Length = 460 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N + L ED + + L YE+ + G D ++E+P +LL D+ +P+MDG Sbjct: 3 NPLVYLVEDSEMLSMLYQDYLRAESYEIKAFRFGKEGLDALKEQPPQVLLLDLELPDMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 +EL R E V+ IT +V + ++ L+KPF + L V Sbjct: 63 MELLRYVCEQGLPTSVVVITAHGSVDIAVEAMRHSAFDFLTKPFDGKRLCTTV 115 >gi|254522503|ref|ZP_05134558.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720094|gb|EED38619.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 189 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 10/115 (8%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 LL +DD+ R L ++L + G E + + ASA R+ P + L D+ + G+ L Sbjct: 10 LLVDDDELYLRTLQRSLARKGLETQTAQDAASALALARQHPPAFALIDLKLGSDSGLALI 69 Query: 66 RRATELDPDLKVMFITGFAAVA-------LNPDSNAPKNAKVLSKPFHLRDLVNE 113 + L D++++ +TG+A++A L D PK A V P LR L E Sbjct: 70 QPLRALRADMRILLVTGYASIATAVEAIKLGADDYLPKPATV---PMILRALGEE 121 >gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 219 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ EDD D+ R L +AL AGY V +G + EP+ ++ D+ +P+MDG+ + Sbjct: 1 MLIVEDDRDLNRQLCEALEDAGYVVDKAYDGEEGHFLGDTEPYDAVILDLGLPQMDGLSV 60 Query: 65 ARRATELDPDLKVMFITG---FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + V+ +T ++ D+ A ++KPFH+ +++ V L+ Sbjct: 61 LERWRRDGHSMPVLILTARDRWSDKVAGIDAGAD---DYVAKPFHMEEVLARVRALV 114 >gi|167624826|ref|YP_001675120.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354848|gb|ABZ77461.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ L++ + A +NG + R + +L+ D+ +P++DG Sbjct: 3 RVLLIEDDRDLAETLLQLMELAQMLPDHVSNGIAGLTLARSNSYDVLVIDVGLPKLDGYS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + ++ D ++F+T F+++ + A L+KPF R+L+ + L Sbjct: 63 VCKQLRASGIDTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITAL 116 >gi|163802258|ref|ZP_02196153.1| osmolarity response regulator [Vibrio sp. AND4] gi|159174063|gb|EDP58873.1| osmolarity response regulator [Vibrio sp. AND4] Length = 146 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63 Query: 62 IELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + + RR + L ++ +T + + D P KPF+ R+L+ + Sbjct: 64 LSICRRLRNANNTLPILMLTAKGDEVDRIVGLEVGADDYLP-------KPFNPRELLARI 116 Query: 115 NRLL 118 +L Sbjct: 117 KAVL 120 >gi|160937834|ref|ZP_02085193.1| hypothetical protein CLOBOL_02726 [Clostridium bolteae ATCC BAA-613] gi|158439273|gb|EDP17026.1| hypothetical protein CLOBOL_02726 [Clostridium bolteae ATCC BAA-613] Length = 522 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 34 NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSN 93 +G A++++++ P +L+TDI MP +DG+EL+R A +L+P++ ++ I+ + + Sbjct: 39 DGQDAWNQMKDNPPDILITDIRMPYIDGLELSRLAKDLNPNIVLLIISAYDDFEYARTAM 98 Query: 94 APKNAKVLSKPFHLRDLVNEVNRLLT 119 + + KP L + +NR+LT Sbjct: 99 HLRALDYILKPIDL----DAMNRILT 120 >gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1102 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ + +L + + + G + + NG A D V + L+L D MPE+DG+E Sbjct: 841 RILLAEDNRINQLYLTELVKQLGCQCDTVLNGQEAIDAVLSSHYDLVLMDCQMPELDGLE 900 Query: 64 LARRATELDPDLKV---MFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRL 117 RR EL+ ++ + I A A+ D +A + LSKP ++ + + Sbjct: 901 ATRRIRELEKRGQLKNKLPIIALTANAIKGDREKCLDAGMNEYLSKPVQSDHIITVMKQF 960 Query: 118 L 118 L Sbjct: 961 L 961 Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMP 57 +++L+ +D+ R L + + G + V + A A ++E F +++TD MP Sbjct: 696 KRVLIVDDNRTSRNILSDYMLEWGLDPVETASVAEAKTALQEAHHLKNAFDIVVTDFEMP 755 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVNEVNR 116 +G+E R D+ V+ +T L+P + + KP L+ + Sbjct: 756 NQNGLETGRALQH--SDIPVILLTSSPDTRLDPIELQKCHITLTMRKPVQRHKLLESIYH 813 Query: 117 LLT 119 LLT Sbjct: 814 LLT 816 >gi|119470180|ref|ZP_01612946.1| sensor protein LuxQ [Alteromonadales bacterium TW-7] gi|119446601|gb|EAW27875.1| sensor protein LuxQ [Alteromonadales bacterium TW-7] Length = 602 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 5 ILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+AED+ + LIKA L K ++V N+G A D + F L+L DI+MPEMDG+ Sbjct: 486 ILVAEDNK-TNQVLIKAYLEKLNHKVTLANHGREAIDLFSRKKFDLVLMDIMMPEMDGLT 544 Query: 64 LARRA-TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 A EL D+ + +T A KVL+KP ++L Sbjct: 545 AAEYIRDELVSDVPIYALTANAEKDNKASCFKVGMNKVLTKPIKFQEL 592 >gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli CFT073] gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073] gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU 83972] gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Escherichia coli O157:H7 str. EDL933] gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str. Sakai] gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|145599745|ref|YP_001163821.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Pestoides F] gi|145211441|gb|ABP40848.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Pestoides F] Length = 926 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 48/107 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D RR L L GY V++ N+G A + ++LTD+ MP MDG Sbjct: 805 QILVVDDHPINRRLLADQLTTLGYRVITANDGLDALVALNTNTVDMVLTDVNMPNMDGYR 864 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 L R +L+ + ++ +T A LSKP L L Sbjct: 865 LTERLRQLNHNFPIIGVTANALAEGKQRCIEAGMDNCLSKPVTLDTL 911 >gi|116624965|ref|YP_827121.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228127|gb|ABJ86836.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 633 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDI-VM 56 +++L+ +D++ +R+ L L + GYEV + +GA E PF +L D+ V Sbjct: 503 ERLLVMDDEEALRKVLNTVLTRLGYEVRTARDGAETIVLYEEAMAAGSPFDAVLLDLTVS 562 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 M G+E A + EL+P ++++ +G++A ++ D VL KP+ + V R Sbjct: 563 GGMGGVETAAKLKELNPSVRLVVSSGYSASSVMSDFRRYGFDAVLPKPWTSAAVSEVVRR 622 Query: 117 LL 118 +L Sbjct: 623 VL 624 >gi|117926808|ref|YP_867425.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117610564|gb|ABK46019.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 393 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 2/114 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE- 63 +LL EDD D R + + L + GY+V+ NG A D L+L D +P MDG E Sbjct: 11 LLLVEDDPDQRIIMQRKLQQQGYKVICAENGEEAVDLYNNNTIDLVLMDAQLPGMDGFEA 70 Query: 64 -LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 TE VM IT + + + KP H + L+ + R Sbjct: 71 CFLITHTETGSRCPVMMITSLENSESVDRAFQVGAEEYVPKPIHWKVLMQRIRR 124 >gi|330891032|gb|EGH23693.1| histidine kinase [Pseudomonas syringae pv. mori str. 301020] Length = 277 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 ++IL+ ED D+ L GY N A K + LL TD++MP M+ Sbjct: 153 ERILIVEDRPDVAELAKMVLDDYGYICEIVLNAREALKKFESGSRYDLLFTDLIMPGGMN 212 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LAR P +KV+ TG+A ++ V+SKP +DL +V ++L Sbjct: 213 GVMLAREVRRRYPKIKVLLTTGYAESSIERTDIGGSEFDVVSKPCMPQDLARKVRQVL 270 >gi|325526411|gb|EGD04001.1| putative chemotaxis-related two component response regulator/histidine kinase [Burkholderia sp. TJI49] Length = 607 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++L+ +D +R K L K GY+V +G ++ VR + F L++TD+ MP MDG Sbjct: 483 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMDGWNAVRSDAFDLVVTDVDMPRMDG 542 Query: 62 IEL 64 IEL Sbjct: 543 IEL 545 >gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 15/115 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI 108 >gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. 493-89] gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. H 2687] Length = 949 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 228 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 15/125 (12%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+A+D+ +R L AL + G+ V + +G A +KVR +L+ D++MP++ Sbjct: 1 MDKRILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG 60 Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 G E+ RR E + ++ +T + L D +SKPF LR+L+ Sbjct: 61 GYEVCRR-LESRKGVGILLLTAKNDIVDKVLGLELGADD-------FMSKPFDLRELLAR 112 Query: 114 VNRLL 118 + L+ Sbjct: 113 IKALV 117 >gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|284162107|ref|YP_003400730.1| response regulator receiver protein [Archaeoglobus profundus DSM 5631] gi|284012104|gb|ADB58057.1| response regulator receiver protein [Archaeoglobus profundus DSM 5631] Length = 113 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 2/110 (1%) Query: 11 DDDMRRF-LIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 DDD+ +++ + + Y++++ +G A +K + L++ DIVMPEMDGI+ + Sbjct: 4 DDDLAVLEVLQLMLEGDYDIITARDGKEAVEKFKVYRPDLVIMDIVMPEMDGIQATKEIL 63 Query: 70 ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++DP+ K++ I+ +A D ++L KPF L+ V + ++ Sbjct: 64 KIDPNAKIVAISAYARHK-GKDMLDAGALELLDKPFTKAKLMKIVKKYIS 112 >gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 943 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LLAED+ R FL L +AG EV +G A + + P L+L DI MPEMDG E Sbjct: 695 RVLLAEDNQVNRLFLKHFLVEAGCEVRLAGSGGEALALLAQGPADLVLMDIQMPEMDGTE 754 Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 RR E+ + + + A ++ D +A + +SKP + +L + R+L Sbjct: 755 ATRRIRDGEVGEAARRLPVVALTAYSMKGDRERFLSAGLDDYVSKPVDVDELFMVMRRVL 814 >gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] Length = 244 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 7/117 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D Sbjct: 11 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 70 Query: 61 GIELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E+AR + DL ++ +T AA L + A ++KPF R+LV V Sbjct: 71 GLEVAREVRQ-SHDLSIIMVTAKAAEIDKVLGLEMGAD---DYVTKPFSNRELVARV 123 >gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Persephonella marina EX-H1] gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Persephonella marina EX-H1] Length = 228 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + EDD+D+ L+ L K G+ V S N AY ++ + L++ DI++P+MDG+E Sbjct: 4 IYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNIKSDYPDLIVLDIMLPDMDGLEF 63 Query: 65 AR-----RATELDPDL----KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + + TE P + K I + L D ++KPF +R+L+ + Sbjct: 64 CKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADD-------YVTKPFSIRELIARIK 116 Query: 116 RLL 118 +L Sbjct: 117 AVL 119 >gi|160887918|ref|ZP_02068921.1| hypothetical protein BACUNI_00322 [Bacteroides uniformis ATCC 8492] gi|156862604|gb|EDO56035.1| hypothetical protein BACUNI_00322 [Bacteroides uniformis ATCC 8492] Length = 1360 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D++D+ F+ +L + + S +NG A+ K+ E ++++D++MPEMDG EL Sbjct: 1115 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKIPELMPDIIVSDVMMPEMDGNELC 1173 Query: 66 R--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + + D+ ++ +T AV + ++KPF++ L+ + +L+ + Sbjct: 1174 RWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDL 1230 >gi|149174287|ref|ZP_01852914.1| acetoacetate metabolism regulatory protein atoC [Planctomyces maris DSM 8797] gi|148846832|gb|EDL61168.1| acetoacetate metabolism regulatory protein atoC [Planctomyces maris DSM 8797] Length = 465 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+A+D+ R + L K+GY+ V N A + ++ +PF L+L+D+ MP + Sbjct: 7 HRILIADDEPLYLRTTGELLRKSGYDCVCVPNAQQALEALQTQPFDLILSDLNMPGNFKL 66 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL R + ++ +TG ++ +S L KP DL++ V R ++ Sbjct: 67 ELLRAGRSNWSHIPLIVVTGVPSIPSAIESIRLGITDYLLKPVKFEDLLSSVRRAIS 123 >gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 13/126 (10%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN K IL+ +D+ +R ++ AL AGY+ + N A+ + + L+L D ++P Sbjct: 1 MNGKSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGT 60 Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVN 112 GIELARR EL D ++ +T A + N + +V ++KPF R+LV Sbjct: 61 SGIELARRLKRDELTADTPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVA 115 Query: 113 EVNRLL 118 + +L Sbjct: 116 RLKAVL 121 >gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct] Length = 230 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + + IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P Sbjct: 2 VGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTS 61 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNE 113 GIELARR EL D+ ++ +T A + N + V ++KPF R+LV Sbjct: 62 GIELARRLKRDELTVDIPIIMLT-----AKGEEDNKIQGLGVGADDYITKPFSPRELVAR 116 Query: 114 VNRLL 118 + +L Sbjct: 117 LKAVL 121 >gi|71733399|ref|YP_274680.1| histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553952|gb|AAZ33163.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 507 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 ++IL+ ED D+ L GY N A K + LL TD++MP M+ Sbjct: 383 ERILIVEDRPDVAELAKMVLDDYGYICEIVLNAREALKKFESGSRYDLLFTDLIMPGGMN 442 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LAR P +KV+ TG+A ++ V+SKP +DL +V ++L Sbjct: 443 GVMLAREVRRRYPKIKVLLTTGYAESSIERTDIGGSEFDVVSKPCMPQDLARKVRQVL 500 >gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1462 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ + L GY V NNG D + ++ + L+L D+ MP MDGI Sbjct: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPF---HLRDLVNEVNRL 117 R + P + I A A+ D +A + +SKP LR ++ + + L Sbjct: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQDTSAL 1310 Query: 118 LT 119 +T Sbjct: 1311 IT 1312 >gi|150017580|ref|YP_001309834.1| signal transduction protein [Clostridium beijerinckii NCIMB 8052] gi|149904045|gb|ABR34878.1| putative signal transduction protein [Clostridium beijerinckii NCIMB 8052] Length = 391 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL +D+ + + + + Y+V N G A D + + L+++D+ MPEMD Sbjct: 1 MSKSILFVDDEKAILNSIRREFFDSPYDVYIANGGREALDILEKNHIDLIVSDMRMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFA 84 G EL +R L P++ + ++GF Sbjct: 61 GYELLKRVKLLYPEVTRLILSGFT 84 >gi|118577252|ref|YP_899492.1| two component, sigma54 specific, Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504757|gb|ABL01239.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 451 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 54/106 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + YEV + ++G + +L++TD+ M MD Sbjct: 1 MKAKILIIDDDTSLRRVLEYNLQEEDYEVHAASSGEEGLYLFGQFRPNLVITDMKMSGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 G+ + + E P+ V+ IT F V + ++ ++KPF+ Sbjct: 61 GLMVLKSIKERSPETLVIIITAFGTVDVAVEAMKTGAYDYITKPFN 106 >gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 227 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED+ +R L L + G+ V + +G E PF + + D+ +P+M G+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLPKMSGME 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + + V+ +T ++ + L KPFH+ +L+ VN LL Sbjct: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALL 116 >gi|320180642|gb|EFW55569.1| Hybrid sensory histidine kinase in two-component regulatory system with EvgA [Shigella boydii ATCC 9905] Length = 331 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP +DG EL Sbjct: 95 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNIDGFEL 154 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 155 TRKLREQNSSLPIWGLTANA 174 >gi|300868138|ref|ZP_07112772.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300333873|emb|CBN57952.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 939 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D + R L L G+E++ NG K + +P L++TD+VMP +DG E Sbjct: 735 KILIVDDKWENRSVLANLLSPIGFEIIEAVNGQEGLTKAQCQP-DLIITDLVMPVLDGFE 793 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLTI 120 + RR L +LK + I +A D A + KP + L+ ++ + L I Sbjct: 794 MIRR-IRLIEELKNVVIIVTSASVFEADKYQSLQAGCNDFMPKPVEAKILLEKLQQHLQI 852 Query: 121 K 121 + Sbjct: 853 E 853 >gi|262384753|ref|ZP_06077886.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262293734|gb|EEY81669.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 943 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEM 59 ++ILL ED++ R + +G G V S +G A + +E + L+L D+ MP M Sbjct: 819 KRILLVEDNELNREIAEELIGVTGASVESAEDGVQAVEMFKESAEGYYDLILMDVQMPHM 878 Query: 60 DGIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVN 115 DG E R L D + + I A A D + A + +SKP ++R + ++N Sbjct: 879 DGYEATRCIRALGHSDAQKVPIFAMTANAFAEDVQKSREAGMNAHISKPLNIRAVYKQMN 938 Query: 116 RLL 118 R L Sbjct: 939 RYL 941 >gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 224 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 21/126 (16%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEGP-DVLILDVMLPDTDGYE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI----- 109 Query: 117 LLTIKN 122 L IKN Sbjct: 110 -LRIKN 114 >gi|224369604|ref|YP_002603768.1| response regulator family protein [Desulfobacterium autotrophicum HRM2] gi|223692321|gb|ACN15604.1| response regulator family protein [Desulfobacterium autotrophicum HRM2] Length = 133 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 12/123 (9%) Query: 4 KILLAEDDDD-MRRF--LIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPE 58 ++L+ EDD+D + F AL + YEV + NG A +++ + F L+TD+VMP Sbjct: 6 RLLIVEDDEDILLSFNEFFSALPQ--YEVETATNGLDALKILKQGSKDFHALITDLVMPN 63 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNR 116 + G+ L +L PD +++ ITG+ +P + A + A VL+KP L ++ + + Sbjct: 64 ISGVGLITITRKLSPDTRIIAITGWGD---HPGALASEAAADMVLNKPIDLFEIERFLMK 120 Query: 117 LLT 119 LLT Sbjct: 121 LLT 123 >gi|218886232|ref|YP_002435553.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757186|gb|ACL08085.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 500 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 KIL+ +D MR F+ + L + ++V + G +A + P L++TD +MP+MDG+ Sbjct: 127 KILVVDDSPSMRTFMKEELRRYMFQVYEASGGPTALRVLERNPDVMLVITDFMMPDMDGL 186 Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 EL RR E P L +M ++ A L + ++KPF Sbjct: 187 ELTRRIRERYPREALSIMGVSVHAERPLTVEFIKNGADDFITKPF 231 >gi|206890681|ref|YP_002249287.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742619|gb|ACI21676.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 119 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 48/80 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++ L GYEV++ N+G A + + ++ DI+MP++DGI+ Sbjct: 2 KILVVDDEKNILMLYKAELEDEGYEVITANSGKEAIELFETQNPDIVTLDIMMPDIDGIQ 61 Query: 64 LARRATELDPDLKVMFITGF 83 + R+ + +P++ V+ +T + Sbjct: 62 VLRQLKQKNPNIPVIMLTAY 81 >gi|218439740|ref|YP_002378069.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218172468|gb|ACK71201.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1012 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 13/125 (10%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63 I++ +D ++RRF+ L K GY V +G A DK+++ P + ++ DI MP +DG Sbjct: 893 IMVVDDSINIRRFMALTLEKVGYRVQQARDGQEAIDKLKKGLPIAAVICDIEMPRLDGYG 952 Query: 64 -LARRATE-LDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 LA+ +E + L V+ +T + +ALN ++A SKPF ++L+ + Sbjct: 953 FLAQVKSEPMFRSLPVIMLTSRSGEKHREMALNLGASA-----YFSKPFQAQELLQALKG 1007 Query: 117 LLTIK 121 L+T K Sbjct: 1008 LITKK 1012 >gi|152989726|ref|YP_001350303.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150964884|gb|ABR86909.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 321 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS-AYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ +D + +AL +AGY+ + + AS A ++ E P S+LL D +MPEMDG+ Sbjct: 7 SILVVDDAKFSSAMIGRALSQAGYQDIRFASSASEALRQLEERPVSVLLADWLMPEMDGL 66 Query: 63 ELARRATELD 72 EL R +LD Sbjct: 67 ELTARVRQLD 76 >gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 236 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 14/122 (11%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + +NG +A DK RE ++ D++MP MDG Sbjct: 11 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 70 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L RR D +F+T A + L D ++KPF L ++V + Sbjct: 71 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDD-------YVTKPFSLEEVVARLRV 123 Query: 117 LL 118 +L Sbjct: 124 IL 125 >gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia sp. 4_1_40B] gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular synthesis regulator component C gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1] gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520] gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482] gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88] Length = 949 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 238 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + KIL+ +D+D +RR + L K +E+ +G A +K + +++ DI+MPE D Sbjct: 3 ITHKILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIMMPEKD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVN 115 GIE+ + + + D V+ +T A +SN + +V + KPF R+ V V Sbjct: 63 GIEVCKELRK-EKDTPVIMLT-----AKGEESNRVQGFEVGADDYIVKPFSPREAVLRVK 116 Query: 116 RLL 118 LL Sbjct: 117 ALL 119 >gi|17232801|ref|NP_489349.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134448|dbj|BAB77008.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 935 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DDD+ R L L + G + + ++G V E L+L D+ MP MDG E Sbjct: 723 QILIVDDDDNHRSMLNSLLQEIGCQTLEASDGKQGLQMVNEHHPDLILLDLAMPNMDGFE 782 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLLTI 120 L + E +P + I +A + A L KP + +L N + LL + Sbjct: 783 LMVQLQE-NPQTSSIPIIVSSASVFEENRQRSLQAGATAFLPKPLQIDELFNALRSLLQV 841 Query: 121 K 121 + Sbjct: 842 E 842 >gi|86152014|ref|ZP_01070227.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni 260.94] gi|315124921|ref|YP_004066925.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841122|gb|EAQ58371.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni 260.94] gi|315018643|gb|ADT66736.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 226 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R LI L + +V+ NG K ++ L++TDI MP MDG+++ Sbjct: 10 ILVVEDEIKTRESLINVLSERFSKVIGAQNGDEGLKKFKKFKPDLVITDIAMPIMDGLDM 69 Query: 65 ARRATELDPDLKVMFITGFA 84 AR E+ D+ ++ ++ ++ Sbjct: 70 AREIKEISDDVPIVVLSAYS 89 >gi|186681390|ref|YP_001864586.1| response regulator receiver modulated metal dependent phosphohydrolase [Nostoc punctiforme PCC 73102] gi|186463842|gb|ACC79643.1| response regulator receiver modulated metal dependent phosphohydrolase [Nostoc punctiforme PCC 73102] Length = 409 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D R + LG GYEV+ + G++ V ++ L+L D++MP MDG E Sbjct: 96 KVLVVDDHAASRMTAVALLGMEGYEVIEADRGSTVVGLVTQKQPDLILLDVMMPGMDGFE 155 Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 + + + E + V+FIT ALN + + +V L+KPF +L V Sbjct: 156 VCQLLKQDEQTRLIPVIFIT-----ALNDRRSRIRGIEVGADDFLTKPFDRVELAARVKS 210 Query: 117 LLTIK 121 L+ K Sbjct: 211 LVRQK 215 >gi|332083445|gb|EGI88670.1| sensor protein evgS domain protein [Shigella dysenteriae 155-74] Length = 225 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP +DG EL Sbjct: 57 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNIDGFEL 116 Query: 65 ARRATELDPDLKVMFITGFA 84 R+ E + L + +T A Sbjct: 117 TRKLREQNSSLPIWGLTANA 136 >gi|331084796|ref|ZP_08333884.1| hypothetical protein HMPREF0987_00187 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410890|gb|EGG90312.1| hypothetical protein HMPREF0987_00187 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 45/78 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD ++ + + L G+E + AYD++ + L+++DI+MPE+DG E Sbjct: 4 ILVVDDDKNLNQTVCTYLNDCGFEAKGVLSATEAYDEMYNNLYELIISDIMMPEIDGFEF 63 Query: 65 ARRATELDPDLKVMFITG 82 A +++ + ++F++ Sbjct: 64 AETVRQVNRQIPILFMSA 81 >gi|325264591|ref|ZP_08131321.1| putative response regulator receiver domain protein [Clostridium sp. D5] gi|324030253|gb|EGB91538.1| putative response regulator receiver domain protein [Clostridium sp. D5] Length = 533 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 7/85 (8%) Query: 4 KILLAEDDDDMRRFL-----IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 K+++A+D+ + + + +ALG VV +NG A + V+E +++TDI MP Sbjct: 2 KVVIADDEQKICQLIQLLIDWEALGMEIAAVV--HNGVDAVEAVKEYQPDIMITDIKMPG 59 Query: 59 MDGIELARRATELDPDLKVMFITGF 83 DG+E+ RA E++P+L+ + I+G+ Sbjct: 60 YDGLEMISRAKEINPELEFIIISGY 84 >gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1] Length = 949 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|319785861|ref|YP_004145336.1| LytTR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317464373|gb|ADV26105.1| two component transcriptional regulator, LytTR family [Pseudoxanthomonas suwonensis 11-1] Length = 240 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 5/93 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKAL--GKAGYEVVS-CNNGASAYDKVR-EEPFSLLLTDIVM 56 M+ L+ DD+ + R ++ L G G EVV+ +G+ D +P ++LL DI M Sbjct: 1 MHSLKLVIADDEPLARERLRTLLSGDMGVEVVAEAGDGSEVLDACAMHQPHAVLL-DIAM 59 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALN 89 P MDG+E+ARR + DP V+F T + AL+ Sbjct: 60 PGMDGLEVARRLADSDPATAVVFCTAYDGHALS 92 >gi|317473352|ref|ZP_07932647.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899188|gb|EFV21207.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 546 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 23/116 (19%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60 QKIL+ DD +M R L++ + K Y+++ +NG +A + R FSLLL DI+MP+M+ Sbjct: 4 QKILIV-DDSEMNRALLRDILKDQYDIIEADNGLAAVKILSRRRSDFSLLLLDIMMPKMN 62 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAK---------VLSKPF 105 G E+ + + L V+ I+ N+P+N K +S+PF Sbjct: 63 GFEVLSFINKQQWNETLAVIMISA---------DNSPENIKHAYNLGAFDYISRPF 109 >gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] Length = 234 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 7/117 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E+AR + DL ++ +T AA L + A ++KPF R+LV V Sbjct: 61 GLEVAREVRQ-SHDLSIIMVTAKAAEIDKVLGLEMGAD---DYVTKPFSNRELVARV 113 >gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] Length = 234 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 7/117 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAA---VALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+E+AR + DL ++ +T AA L + A ++KPF R+LV V Sbjct: 61 GLEVAREVRQ-SHDLSIIMVTAKAAEIDKVLGLEMGAD---DYVTKPFSNRELVARV 113 >gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I + +DD+ +R+ + L K GY V +G A++ + P L + D+++P MDG EL Sbjct: 8 IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASPPDLWVLDLMLPGMDGYEL 67 Query: 65 ARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR + ++ ++ I+ + L D + KPF R+LV V R Sbjct: 68 CRRIRN-EAEVPIIMISARDTEVDKILGLELGSDD-------YMVKPFSPRELVARVKRQ 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|301059490|ref|ZP_07200403.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300446385|gb|EFK10237.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 225 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 4 KILLAEDDDDMRRFLIKALGK-AGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ +D R ++ L K AGY+VV ++G +K RE L+L DI +P M+G Sbjct: 6 RILVVDDHPLFREGVVGMLSKTAGYQVVGQASSGEEGIEKARELHPGLVLMDISLPGMNG 65 Query: 62 IELARRATELDPDLKVMFIT 81 I+ RR PD+KV+ ++ Sbjct: 66 IDATRRMRSTSPDMKVIMLS 85 >gi|294676890|ref|YP_003577505.1| chemotaxis protein CheY [Rhodobacter capsulatus SB 1003] gi|294475710|gb|ADE85098.1| chemotaxis protein CheY-1 [Rhodobacter capsulatus SB 1003] Length = 121 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L +D +R + L GY VV NG K++ EP SL++ D+ MP M+ Sbjct: 1 MAKTVLTIDDSKAIRDMVSFTLSGVGYRVVEAENGLEGLAKLKSEPVSLVVVDLNMPVMN 60 Query: 61 GIELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E R+A + +P + ++ +T + A L+KPF LV +L Sbjct: 61 GFEFIRKARQ-EPKGSGVPILMLTTETKPEAKAEGKALGATGWLNKPFDAAMLVAVARKL 119 >gi|257464207|ref|ZP_05628587.1| DNA-binding response regulator [Fusobacterium sp. D12] Length = 226 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +++ + K GYEV +NG A ++++ F L+ D ++P +DG + Sbjct: 2 KVLIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGSQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E+ + F+ A D + + KPF R+L+ +LL Sbjct: 62 LTKIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLL 119 >gi|291614053|ref|YP_003524210.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] gi|291584165|gb|ADE11823.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] Length = 122 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D +R+ + AL AGY+V+ +G A K+ + L+++D+ MP MD Sbjct: 1 MAKTILVVDDSASLRQVVSIALKGAGYDVIEACDGKDALSKLTGQKIHLIISDVNMPNMD 60 Query: 61 GIELARRATE 70 GI + A + Sbjct: 61 GITFVKEAKQ 70 >gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 224 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAED+ D+ + K L K GY V S +G A D + + L++ DI+MP+++G E Sbjct: 2 KILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIMMPKVNGFE 61 Query: 64 LARRATELDPDLKVMFIT 81 + ++ + V+ +T Sbjct: 62 VIKKLRDKGNHTSVLMLT 79 >gi|220904088|ref|YP_002479400.1| response regulator receiver protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868387|gb|ACL48722.1| response regulator receiver protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 132 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +ILLA+D+ D L + L G+ V +G +A E+ +++ D++MP + Sbjct: 1 MALRILLADDEKDFVETLAERLELRGHSVRVVYDGLAALRAAVEDMPDVVVLDLLMPGLP 60 Query: 61 GIELARRATELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPF 105 G E+ R + PDL V+ +TG AAV L+P S A L+KP Sbjct: 61 GDEVLHRLKNVQPDLPVLLLTGHAAVDDTGLSPVSQA---YACLTKPL 105 >gi|209525074|ref|ZP_03273618.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|209494483|gb|EDZ94794.1| response regulator receiver protein [Arthrospira maxima CS-328] Length = 146 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE- 63 ILL +D D R L + L + GY V G A + P L+L DI MP+MDG E Sbjct: 13 ILLVDDKPDNLRLLSQMLTEQGYNVRRVTKGKMALITAKASPPDLVLLDIKMPDMDGYEV 72 Query: 64 -LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L +A E+ ++ V+F++ + + ++KPF + +++ V Sbjct: 73 CLQLKADEITAEIPVIFMSALDELPDQVKAFTIGGVDYITKPFQVEEVLVRVK 125 >gi|29826679|ref|NP_821313.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29603775|dbj|BAC67848.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 259 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDD + R L L GY G A + + + +LL D+ +P+MDG++ Sbjct: 24 RVLVVEDDDTIGRHLETGLRSNGYTPTWSRTGTGALTESAQTQYDVLLLDLGLPDMDGLD 83 Query: 64 LARRATELDPDLKVMFIT 81 +AR PDL ++ +T Sbjct: 84 IARTLRARLPDLLIIILT 101 >gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 57-2] gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 60-1] Length = 933 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 811 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKNHIDIVLSDVNMPNMDGYRL 870 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 871 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 913 >gi|71735333|ref|YP_276134.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555886|gb|AAZ35097.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 791 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62 +L+ ED+ D+ F L + G++V+ + A A ++ P F ++ +DI MP M G+ Sbjct: 670 VLMVEDNQDIGTFTRPMLEQLGFQVLWVKSAAEALHELSGNPENFHVVFSDIAMPGMSGL 729 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL P + V+ TG++ + +L KP+ DL + R ++ Sbjct: 730 ELYAEIEARYPWMPVVLTTGYSTEFATIAKDEAHRFDLLQKPYSREDLAAILQRAVS 786 >gi|39997139|ref|NP_953090.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39984029|gb|AAR35417.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|307634971|gb|ADI84875.2| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 455 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+++MR L L K GYE V +G +A + + +L DI MP MD Sbjct: 1 MKKRILVVDDEENMRHMLCAMLRKQGYEAVEAADGEAALAQASAAAYDFILCDIRMPIMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 G+ R + + V+ ++ + V +SKPF Sbjct: 61 GVGFLRTFQKAELPGTVIMMSAYGTVDAAIACMKEGAYDYVSKPF 105 >gi|83313199|ref|YP_423463.1| FOG: CheY-like receiver [Magnetospirillum magneticum AMB-1] gi|82948040|dbj|BAE52904.1| FOG: CheY-like receiver [Magnetospirillum magneticum AMB-1] Length = 123 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 10/122 (8%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++ ED+ + L +AL AGY V ++G D ++L DI +P+ Sbjct: 1 MTGTVVVVEDNAMNMKLLEQALTIAGYTTVKSSDGDGLVDLTAGSGAGVILMDIQLPKYS 60 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAP----KNAKVLSKPFHLRDLVNEV 114 GI+L + RA + + V+ +T FA +PDS A +V++KP +R L++EV Sbjct: 61 GIDLLKQLRADDRTKGVPVVAVTAFA----DPDSVAGFLEEGFNQVITKPISIRKLLDEV 116 Query: 115 NR 116 R Sbjct: 117 AR 118 >gi|86152639|ref|ZP_01070844.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612550|ref|YP_001001139.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni 81-176] gi|85843524|gb|EAQ60734.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249741|gb|EAQ72700.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni 81-176] gi|307748355|gb|ADN91625.1| DNA-binding response regulator [Campylobacter jejuni subsp. jejuni M1] Length = 226 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ R LI L + +V+ NG K ++ L++TDI MP MDG+++ Sbjct: 10 ILVVEDEIKTRESLINVLSERFSKVIGAQNGDEGLKKFKKFKPDLVITDIAMPIMDGLDM 69 Query: 65 ARRATELDPDLKVMFITGFA 84 AR E+ D+ ++ ++ ++ Sbjct: 70 AREIKEISDDVPIVVLSAYS 89 >gi|114565892|ref|YP_753046.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336827|gb|ABI67675.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 124 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 6/83 (7%) Query: 4 KILLAEDDDDMRRFL----IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 KIL+ +D + FL IK L +A E+++ NNG AY +E ++TD++MPEM Sbjct: 2 KILIVDDSQFFQGFLKKIFIKYLPEA--ELITANNGRDAYALYEQERPDFIITDLLMPEM 59 Query: 60 DGIELARRATELDPDLKVMFITG 82 +G E + + +P +KV+ I+ Sbjct: 60 NGQEFLQVVKQSNPQVKVIIISA 82 >gi|331009127|gb|EGH89183.1| two-component sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 755 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 632 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPGINGTDL 691 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 692 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 732 >gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327] Length = 949 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|317061728|ref|ZP_07926213.1| DNA-binding response regulator [Fusobacterium sp. D12] gi|313687404|gb|EFS24239.1| DNA-binding response regulator [Fusobacterium sp. D12] Length = 231 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ EDD +++ + K GYEV +NG A ++++ F L+ D ++P +DG + Sbjct: 7 KVLIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGSQ 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L + E+ + F+ A D + + KPF R+L+ +LL Sbjct: 67 LTKIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLL 124 >gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354] gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354] Length = 949 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D RR L LG GY+ + N+G A + + + ++L+D+ MP MDG L Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 +R +L L V+ +T A LSKP L Sbjct: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929 >gi|288800412|ref|ZP_06405870.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Prevotella sp. oral taxon 299 str. F0039] gi|288332625|gb|EFC71105.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Prevotella sp. oral taxon 299 str. F0039] Length = 1324 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED D+MRRF+ + L + + V + +NG A + E +++TDI+MP M+G EL Sbjct: 1072 LLLVEDHDEMRRFIAEQL-ELHFIVETASNGNEALAILAERHIDIIVTDIMMPNMNGFEL 1130 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 ++ + D+ + I A N + + K L KPF ++ L ++ +L Sbjct: 1131 CKK---VKSDINISHIPIVLLTARNDIQSKIEGLKAGAESYLEKPFSIKYLRQQLLSIL 1186 >gi|257487262|ref|ZP_05641303.1| two-component sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 787 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIEL 64 LL +D++ +R L + GY V+ +G A + + F LL+TD +MP ++G +L Sbjct: 664 LLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPGINGTDL 723 Query: 65 ARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDL 110 AR P V+ ++G+A L+PD P+ L+KPF +L Sbjct: 724 ARVVRSSRPGTAVLLVSGYAEREGLDPD--LPR----LTKPFRKSEL 764 >gi|254294351|ref|YP_003060374.1| response regulator receiver [Hirschia baltica ATCC 49814] gi|254042882|gb|ACT59677.1| response regulator receiver protein [Hirschia baltica ATCC 49814] Length = 131 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++K+L+ ED++ + LG G+E V +G A + +E L++ DI +PE+ G Sbjct: 6 SKKVLVVEDNELNMKLFCDLLGAFGFEAVKSIDGLRAVEMAKEIHPDLIIMDIQLPEVSG 65 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++LAR + D ++ ++ +T FA D A ++KP + + V L + Sbjct: 66 LDLARWIKDDDVVGNIPILAVTAFAMRQDEEDVKAAGCEAYMTKPIQMTPFIKMVEELTS 125 Query: 120 IKN 122 + Sbjct: 126 TRG 128 >gi|254294024|ref|YP_003060047.1| Fis family trnascriptional regulator [Hirschia baltica ATCC 49814] gi|254042555|gb|ACT59350.1| two component, sigma54 specific, transcriptional regulator, Fis family [Hirschia baltica ATCC 49814] Length = 472 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 59/118 (50%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+A+DD +R + + L + GY V S N ++ + + LL+TD+ MP+ ++ Sbjct: 6 VLVADDDSSVRLVVSQTLAQEGYHVRSTNTASTLWKWIEAGEGDLLITDVYMPDESIFDI 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + P+L ++ I+G + V ++ + KPF + L + V R L ++ Sbjct: 66 MPKIRQERPELPIIVISGQSTVLTATMASDHGVYDYMPKPFDIDVLADSVKRALQKRS 123 >gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 237 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ ED+D +R+F+ L + ++V+ +G A + + L++ DI++P MDG Sbjct: 4 QERILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLPGMDG 63 Query: 62 IELARRATELDPDLKVMFITG 82 +E+ RR P + V+ +T Sbjct: 64 LEVCRRLRVESPGIAVIMLTA 84 >gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 224 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 21/126 (16%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEGP-DVLILDVMLPDTDGYE 61 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI----- 109 Query: 117 LLTIKN 122 L IKN Sbjct: 110 -LRIKN 114 >gi|242218736|ref|XP_002475155.1| hypothetical histidine kinase [Postia placenta Mad-698-R] gi|220725649|gb|EED79627.1| hypothetical histidine kinase [Postia placenta Mad-698-R] Length = 1090 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +LL ED+ +R + L K GY VV+ N+G A D + F L D MP +DG Sbjct: 961 ETVLLVEDNPVNQRLGCRLLEKLGYAVVTANHGQEALDAISRSTFYCCLMDCQMPVLDGF 1020 Query: 63 ELARRATELDPD 74 R+ EL+ + Sbjct: 1021 ATTRKVRELESE 1032 >gi|182415836|ref|YP_001820902.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177843050|gb|ACB77302.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 846 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61 ++L+ +D+ +R + L G+ VV+ ++G + R P F + D+ MP +DG Sbjct: 729 RVLVVDDEISVREIAARMLSSFGFTVVTASDGVDGLRQFRASPRSFDFVFLDLTMPGLDG 788 Query: 62 IE--LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 IE A RAT D++VM ++G++ L KPF L ++ LL Sbjct: 789 IETLTALRATA--ADIRVMLVSGYSENEQIAQLGKDGRLVFLQKPFARARLEQKLKELL 845 >gi|160894351|ref|ZP_02075128.1| hypothetical protein CLOL250_01904 [Clostridium sp. L2-50] gi|156864052|gb|EDO57483.1| hypothetical protein CLOL250_01904 [Clostridium sp. L2-50] Length = 534 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 26 GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA 84 G+EVV S NG A + V ++ +++TDI MP MDG+ELARR + ++ ++ TGF Sbjct: 29 GFEVVGSATNGVKALELVEKQQPDVVITDIKMPYMDGLELARRLNKEYQNIHIVIFTGFD 88 Query: 85 AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ + + + KP + +L + RL Sbjct: 89 EFEYAKEAVHLEVEEYMLKPINALELTECMKRL 121 >gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 231 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEMD Sbjct: 1 MTTSILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMD 60 Query: 61 GIELAR 66 G+E+ R Sbjct: 61 GLEVCR 66 >gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 226 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 49/103 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD D+ R L ALG AGY V +G A EP+ ++ D+ +P++DG+ Sbjct: 2 RILLVEDDPDLSRQLKLALGDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGLPKVDGVS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 + R + V+ +T + L+KPFH Sbjct: 62 VLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFH 104 >gi|71908411|ref|YP_285998.1| response regulator receiver [Dechloromonas aromatica RCB] gi|71848032|gb|AAZ47528.1| Response regulator receiver [Dechloromonas aromatica RCB] Length = 306 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D+ MR L L GYEVV + +G + +R+ ++ D +P DG+ Sbjct: 36 RVLIVDDNASMRTLLSVLLSSQGYEVVGTLPDGNGVMEAIRKMSPDIVCLDYRLPGRDGL 95 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++ + P++ V+F+T + + A L KPF + ++NE+ ++ + Sbjct: 96 DILQEINSTLPEIDVLFMTASEGPGIEEQAADTGAAGFLRKPFSQKQVINELRQVCQTR 154 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +++A+D+ +R L L + G +V NG A ++L D+ MP + G+E Sbjct: 190 VVIADDNSSVRLLLKGVLSELGLHIVGQAGNGEEAIRAAMTHQPNVLFLDVNMPILSGLE 249 Query: 64 LARRATELDPDLKVMFITG 82 R E P+ V+ +TG Sbjct: 250 ALPRILEASPETAVVMVTG 268 >gi|51244228|ref|YP_064112.1| Ntr family two-component response regulator [Desulfotalea psychrophila LSv54] gi|50875265|emb|CAG35105.1| probable two-component system response regulator (Ntr family) [Desulfotalea psychrophila LSv54] Length = 443 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL +DD R L LG+ GY+V++ +G K+ + L+L D+ MP +DG+ Sbjct: 2 KKILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAV 86 ++ + + V+ IT F+++ Sbjct: 62 ATLSLLSQQNNRIPVIVITAFSSM 85 >gi|84500979|ref|ZP_00999214.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Oceanicola batsensis HTCC2597] gi|84391046|gb|EAQ03464.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Oceanicola batsensis HTCC2597] Length = 445 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 52/102 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI + +D+ DMR+ + + L +GY+ + + A + + ++++DI MP MDG++ Sbjct: 6 KIAIVDDEQDMRQSISQWLALSGYDTETFGSAEDALKALGPDYPGIVISDIKMPGMDGMQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 R+ D L V+ ITG V + ++ L KPF Sbjct: 66 FLRKIMGSDSALPVIMITGHGDVPMAVEAMRIGAFDFLEKPF 107 >gi|320354991|ref|YP_004196330.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320123493|gb|ADW19039.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 118 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66 + +D+ +R L + L + GY V + NG V E F L++TD++MP DG++ Sbjct: 1 MVDDEAQIRTMLTQMLEQEGYAVQTAENGEEGLALVAREAFDLVITDMIMPVKDGLKFIM 60 Query: 67 RATELDPDLKVMFITGFAAVALN---PDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P LK++ I+G A+ + + L KPF RD++ ++ R Sbjct: 61 ELVRDYPTLKILAISGGGAIKAERYLTMAGYLGDIATLEKPFK-RDVLLDLVR 112 >gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] Length = 234 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 15/120 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+ Sbjct: 2 KKILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 E+AR + D+ ++ +T + L D ++KPF R+LV V Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADD-------YVTKPFSNRELVARVK 113 >gi|311695306|gb|ADP98179.1| sensory box sensor histidine kinase/response regulator [marine bacterium HP15] Length = 783 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL ED+ R + L K G +V++ N+G +A + PF L+ D VMP +DG E Sbjct: 658 KVLLVEDNPVNRTLTRRLLEKLGCDVMTANDGEAAASLWQWHPFDLVFMDCVMPRVDGFE 717 Query: 64 LARRATELD 72 RR E + Sbjct: 718 ATRRLREWE 726 >gi|313105813|ref|ZP_07792076.1| two-component response regulator [Pseudomonas aeruginosa 39016] gi|310878578|gb|EFQ37172.1| two-component response regulator [Pseudomonas aeruginosa 39016] Length = 253 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L EDD + L + L +G+EV C +G R + L+L DI++P DG+E Sbjct: 24 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGAYDLILMDIMLPGRDGLE 83 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ + + L V+ ++ A + L KPF L +L ++ +L Sbjct: 84 ILRQLRQ-EQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAIL 137 >gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1846 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL +D+ DMR++L + L + ++V + +G +A E+ L+L+D++MP +DG+EL Sbjct: 1477 VLLVDDNADMRKYLTRILSEH-FQVEAVADGKTALAVAIEQVPDLILSDVMMPRLDGVEL 1535 Query: 65 ARRATELDPDLK-VMFI-----TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +A DP K V FI G ++ ++ A L KPF ++LV+ VN L Sbjct: 1536 L-QALRSDPRTKEVPFILLSARAGEESIIKGLEAGAD---DYLIKPFSAQELVSRVNAHL 1591 Query: 119 TI 120 + Sbjct: 1592 QM 1593 >gi|302343425|ref|YP_003807954.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640038|gb|ADK85360.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 847 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 2/115 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 ++ ILL +D+ ++ R + L GY V S + A EP + LLLTD MP+M Sbjct: 719 HETILLVDDEPELVRLGLGVLEVLGYRVESATDPEEALRMFLAEPARYDLLLTDQTMPKM 778 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 G+EL R L V+ TG+ + +N ++ KP + +L V Sbjct: 779 TGLELIERVRARRGGLPVVLCTGYGEQVARILAQRGENVRLAQKPVLMAELAQAV 833 >gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED++ + L K GYEV + G A + FSL++ D+++P++ G E Sbjct: 3 KVLIVEDEEKVSNIQKAYLEKEGYEVYTSTTGLKALELFDSIEFSLIILDLMLPDIQGEE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + D+ + +T +A+ + + L KPF R+LV VN L Sbjct: 63 ICKIIRD-KSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLF 116 >gi|294678067|ref|YP_003578682.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294476887|gb|ADE86275.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] Length = 877 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63 IL +DD D+ L + G+ VV+ +G +A + ++E P LL TD+ MP + G Sbjct: 772 ILAVDDDADLLEITADQLRRLGHAVVTAPDGLTALEMLKEIPEIDLLYTDLAMPGLGGRR 831 Query: 64 LARRATELDPDLKVMFITG 82 LA A L P L V+F +G Sbjct: 832 LAEEAQALRPGLPVLFTSG 850 >gi|291570337|dbj|BAI92609.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 145 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE- 63 ILL +D D R L + L + GY V G A + P L+L DI MP+MDG E Sbjct: 12 ILLVDDKPDNLRLLSQMLTEQGYNVRRVTKGKMALITAKASPPDLVLLDIKMPDMDGYEV 71 Query: 64 -LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 L +A E+ ++ V+F++ + + ++KPF + +++ V Sbjct: 72 CLQLKADEITAEIPVIFMSALDELPDQVKAFTIGGVDYITKPFQVEEVLVRVK 124 >gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+D + + L +GY+V++ NNG A +EE L+L D+++P +DG Sbjct: 4 EKILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGY 63 Query: 63 ELAR--RATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 ++ + R+ D+ V+ +T + L D ++KPF +R+L+ Sbjct: 64 DVCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADD-------YMTKPFSIRELLAR 116 Query: 114 VNRLL 118 + +L Sbjct: 117 IKAVL 121 >gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 I++ +DD +R + L G+ +V +G A DK+ L++ DI+MP MDG EL Sbjct: 4 IMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIMMPNMDGWEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R+ E D ++ +T + L KPF ++LV V LL Sbjct: 64 CRKLRE-HYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALL 116 >gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L EDD+ + ++ L G V S +NG A + F L+L D+ MPEM+G E Sbjct: 600 KVLAVEDDELNMQLMLDRLRGFGCVVSSASNGKEALAVLDRNVFDLVLMDLSMPEMNGFE 659 Query: 64 LA---RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R L+ ++ ++ IT A+ + D A + LSKP DL Sbjct: 660 TTAALRSNNRLNSEVPIVAITSHASEKVRRDCLAKGFSDFLSKPLSSCDL 709 >gi|170690170|ref|ZP_02881337.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170144605|gb|EDT12766.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ M +L K L +A + V + +NG + E F L++ D+++P +DG E Sbjct: 2 RILIIEDEPKMAAYLRKGLVEASFTVDTADNGVNGLFLALHEEFDLIVLDVMLPGIDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 L RR + + V+ +T VA + LSKPF + + + LL Sbjct: 62 LLRRLRK-EKQTPVLLLTARDTVADKVEGLELGADDYLSKPFAYAEFLARIRSLL 115 >gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D+ D+R + L K G+E++ +NG A D E L + D++MP MD Sbjct: 1 MKPRVLVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFIT 81 G EL E D+ V+ +T Sbjct: 61 GFELVENLKEF-KDIPVIMLT 80 >gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 DG+ + + + D+ ++F+T Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLT 81 >gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R E D D+ V+ +T + L D ++KPF+ +L+ V Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELILRVKN 113 Query: 117 L 117 + Sbjct: 114 M 114 >gi|162451780|ref|YP_001614147.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161162362|emb|CAN93667.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 1171 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED+ DMR +L L + V + NG A VR L+LTDI+MP +DG L Sbjct: 512 VLLVEDNPDMRSYLRDVLATR-WTVEAVENGEMALCAVRSRVPDLVLTDIMMPGLDGFGL 570 Query: 65 --ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 A RA + V+FI+ + A L KPF +R+L+ V Sbjct: 571 LKALRAEPRTRLVPVVFISARSGEASRVHGAEAGADDYLVKPFSVRELLARV 622 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ D L AL G EV +G A E L+L DI +P MDG E Sbjct: 1036 RVLIVEDNVDAASTLADALLALGQEVWIAGDGPHALRAAAEHRPDLVLLDIGLPGMDGYE 1095 Query: 64 LARRATELD 72 +ARR E + Sbjct: 1096 VARRLREAE 1104 >gi|149926997|ref|ZP_01915255.1| two component transcriptional regulator, winged helix family protein [Limnobacter sp. MED105] gi|149824218|gb|EDM83438.1| two component transcriptional regulator, winged helix family protein [Limnobacter sp. MED105] Length = 236 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD + L ++L +AGY V G+ A + + +L+ D+ +P+M G+E Sbjct: 2 KILLAEDDSLLSEGLSQSLRQAGYAVDCMFKGSDADTALTTMNYDILILDLGLPKMSGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR ++ V+ +T +V ++KPF L++L V L Sbjct: 62 VLRRLRARGNNMPVLILTAADSVEQRVQGLDAGADDYMAKPFDLKELEARVRAL 115 >gi|170725636|ref|YP_001759662.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169810983|gb|ACA85567.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 679 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 7/118 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMP-EMD 60 K+L+ +D+ ++ L G EV SCN+ + LL+TD++MP ++ Sbjct: 556 KVLIVDDEVELLNVLKDYCELLGMEVESCNDPLEVRRRYSSGLGDIKLLITDVLMPGGIN 615 Query: 61 GIELARRATELDPDLKVMFITGFAA-VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G ELA+ + D +L V+ I+GF + +N + + P +VL KPF L LV+ + ++ Sbjct: 616 GYELAKELSA-DAELSVLLISGFIGDIGINKNEDMP--YRVLHKPFDLEGLVDSLEQV 670 >gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] Length = 226 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 +ILL EDD D+ F++K L +AG+ V +NG E F ++ D ++P +DG+ Sbjct: 2 RILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPGGIDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 L D + V+F++ + V LSKPF +L+ V L Sbjct: 62 RLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEAL 116 >gi|152983575|ref|YP_001347907.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150958733|gb|ABR80758.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL ED + L+ +LG+ GY V +G A + EP+ L++ D+ +P G+E Sbjct: 2 RLLLVEDHVPLADELLASLGRQGYAVDWLADGRDAALQGASEPYDLIILDLGLPGRPGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R L V+ +T + A D L+KPFH +L + LL Sbjct: 62 ILREWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALL 116 >gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri] Length = 229 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 13/126 (10%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN K IL+ +D+ +R ++ AL AGY+ + N A+ + + L+L D ++P Sbjct: 1 MNGKSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGT 60 Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVN 112 GIELARR EL D ++ +T A + N + +V ++KPF R+LV Sbjct: 61 SGIELARRLKRDELTADTPIIMLT-----AKGEEDNKIQGLEVGADDYITKPFSPRELVA 115 Query: 113 EVNRLL 118 + +L Sbjct: 116 RLKAVL 121 >gi|51598098|ref|YP_072289.1| hybrid two-component system regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|51591380|emb|CAH23046.1| putative hybrid two-component system regulatory protein [Yersinia pseudotuberculosis IP 32953] Length = 851 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 +Q +L+ ED+ D+R+ L + L + GY + + A + + P S++++D+++P ++ Sbjct: 737 DQLVLVLEDEPDVRQTLCEQLHQLGYLTLETGDSRQALALMADVPDISIVISDLMLPGDL 796 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ ++A + P LK++ I+G L N ++L KPF+ + LV + R+ Sbjct: 797 TGAEVLQQARSVYPHLKLLLISG---QDLRRSKNFMPEVELLRKPFNQQQLVQALQRV 851 >gi|304320167|ref|YP_003853810.1| Signal transduction histidine kinase [Parvularcula bermudensis HTCC2503] gi|303299070|gb|ADM08669.1| Signal transduction histidine kinase [Parvularcula bermudensis HTCC2503] Length = 651 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED+ L + G++V NG A + V + L+L D+ MP MDGIE Sbjct: 521 ILLAEDNSINAVLAETILRRDGHQVDLVRNGKEAVEAVDLSVYDLILMDMRMPVMDGIEA 580 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNR 116 R ++ P +V+ I A A D A A + LSKPF + L + VNR Sbjct: 581 TVRIRQM-PTGEVLPIIALTANATTADRQACLEAGMNDFLSKPFEPKSLSDIVNR 634 >gi|84683743|ref|ZP_01011646.1| two-component hybrid sensor and regulator [Maritimibacter alkaliphilus HTCC2654] gi|84668486|gb|EAQ14953.1| two-component hybrid sensor and regulator [Rhodobacterales bacterium HTCC2654] Length = 732 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61 + IL+ +D D+ L GY V + +GA A + + P LLLTD+VMP M G Sbjct: 612 EHILVVDDQPDLLAITRDMLEGFGYRVTTARSGAEALEWLGSAGPCDLLLTDVVMPGMSG 671 Query: 62 IELARRATELDPDLKVMFITGFAAVA 87 E+A + P + V++++G+ ++ Sbjct: 672 FEIAAAVRAMAPKVPVIYMSGYTGIS 697 >gi|153948092|ref|YP_001402977.1| sensory box histidine kinase/response regulator [Yersinia pseudotuberculosis IP 31758] gi|152959587|gb|ABS47048.1| sensory box histidine kinase/response regulator [Yersinia pseudotuberculosis IP 31758] Length = 851 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59 +Q +L+ ED+ D+R+ L + L + GY + + A + + P S++++D+++P ++ Sbjct: 737 DQLVLVLEDEPDVRQTLCEQLHQLGYLTLETGDSRQALALMADVPDISIVISDLMLPGDL 796 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ ++A + P LK++ I+G L N ++L KPF+ + LV + R+ Sbjct: 797 TGAEVLQQARSVYPHLKLLLISG---QDLRRSKNFMPEVELLRKPFNQQQLVQALQRV 851 >gi|94312897|ref|YP_586106.1| signal transduction histidine kinase (cheA) [Cupriavidus metallidurans CH34] gi|93356749|gb|ABF10837.1| signal transduction histidine kinase (cheA) [Cupriavidus metallidurans CH34] Length = 768 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +++L+ +D +R K L GY+V +G ++ +R E F L++TD+ MP MDGI Sbjct: 645 KRVLVVDDSLTVRELERKLLSGRGYDVAVAVDGMDGWNVLRAESFDLVITDVDMPRMDGI 704 Query: 63 ELARR 67 EL R Sbjct: 705 ELVSR 709 >gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241] gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 DG+ + + + D+ ++F+T Sbjct: 61 DGLSVCKEIRKT-SDVPIIFLT 81 >gi|332883223|gb|EGK03506.1| transcriptional regulatory protein rprY [Dysgonomonas mossii DSM 22836] Length = 237 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 20/118 (16%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+ L EDD+++ L + L GY+ +G Y +E + L + D++MP+ DGI Sbjct: 6 KLFLCEDDENLGMLLREYLQAKGYDTDLYTDGEVGYKGFVKEKYDLCILDVMMPKKDGIT 65 Query: 64 LARRATELDPDLKVMFIT----------GFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L + ++ ++ ++F+T GF A A + ++KPF + +LV Sbjct: 66 LVKEIRAINTEIPIIFLTAKNMKDDILEGFKAGADD----------YITKPFSMEELV 113 >gi|329946281|ref|ZP_08293875.1| putative response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] gi|328527573|gb|EGF54568.1| putative response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] Length = 242 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +LL +D+ +RR L L ++GY V+ ++GA A D + ++++D++MP MDG Sbjct: 10 SATVLLVDDEAPIRRSLGPYLERSGYRVLLASDGAEALDLLASYQVDIIVSDVLMPRMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL RR ++ +T A + LSKPF +L + + +L Sbjct: 70 RELVRRVRAGGAWTPIILLTQVDASYERISALDDGADDYLSKPFDPAELASRICAVL 126 >gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC] gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC] Length = 233 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++ + F+ LG GY+V+ +G A + ++E +L+L D ++P DGI Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + D+ ++ +T + + + ++KPF + +L + +L Sbjct: 67 VLRRIRK-QSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVIL 120 >gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFIT 81 DG+ + + + D+ ++F+T Sbjct: 61 DGLSVCKEIRKT-SDVPIIFLT 81 >gi|325105821|ref|YP_004275475.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324974669|gb|ADY53653.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 232 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 3 QKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++LL EDD ++ L L K ++V C NG F + + D++MP+ DG Sbjct: 4 KRVLLVEDDPNLGAILEDYLSLKGKFDVKLCKNGEEGLKAFTSNEFDICILDVMMPKKDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L + +++ + ++F T + ++ ++KPF + +L+ +N LL Sbjct: 64 LSLGKDIRKINSTVPIIFATAKGMLEDKTEAFGLGGDDYITKPFRIEELLLRINALL 120 >gi|320109408|ref|YP_004184998.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319927929|gb|ADV85004.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 234 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 43/66 (65%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+ + R L +L +GY+V ++G +++ + + L++TD+ MPEM+ Sbjct: 1 MAKRILVVDDERQITRMLRTSLQSSGYDVSIASDGLEGFERFKADQPDLIVTDLAMPEMN 60 Query: 61 GIELAR 66 G+EL + Sbjct: 61 GLELTQ 66 >gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 227 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 40/67 (59%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ++L+ ED++ + RFL L GYEV + NG + + E F L+L DI++P + G Sbjct: 3 DYQVLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIMLPGLSG 62 Query: 62 IELARRA 68 +E+ RR Sbjct: 63 MEICRRV 69 >gi|296273568|ref|YP_003656199.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296097742|gb|ADG93692.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 229 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 10/119 (8%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AEDD+ + + + L + ++ +S +G A + + L+++DI+MP+++G EL Sbjct: 4 ILVAEDDETLNKMICTKLKQENFKTISAFDGEEALEILDTTYVDLVISDIMMPKINGYEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLL 118 + + P ++ IT A N + K ++ + KP L+++V VN LL Sbjct: 64 IQEIRKTAPSFPILMIT-----AKNQMEDIEKGFRLGTDDYMIKPIQLKEMVLRVNALL 117 >gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 226 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 53/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G + Sbjct: 2 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R + V+ +T + L KPF +L+ V LL Sbjct: 62 IIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 >gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D+ D+ L L GY V + NNGA A ++ + P L+L D+ MPE DG E Sbjct: 3 KILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIEQASKSP-DLMLLDVNMPEADGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 + R+ + ++F+T A + KPF L +L Sbjct: 62 VCRKVRD-HVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDEL 107 >gi|302873857|ref|YP_003842490.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|307689897|ref|ZP_07632343.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|302576714|gb|ADL50726.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] Length = 366 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D + + L + GY + S +G A + V+ F+L+L D++MPEMDG E Sbjct: 8 KILVVDDTPFNIKIVSTILQEVGYNIYSTTSGREALEMVKNIRFNLILLDVMMPEMDGYE 67 Query: 64 LARRAT--ELDPDLKVMFITGFA---AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ E D+ ++F+T +V D A L KPF+ ++L++ V + Sbjct: 68 VIRKLKNDEDTRDIPIIFLTARGDSESVVRAFDEGA---YDYLIKPFNPKELLSRVKTHI 124 Query: 119 TIK 121 +K Sbjct: 125 ELK 127 >gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185] gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+D +R + L GYEV+ +G A E L++ DI++PE+D Sbjct: 1 MQRNILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GIELARR 67 G + RR Sbjct: 61 GWSVCRR 67 >gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 918 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+ + + L K+G+ V +NG A + F L+L D+ MP MDGI Sbjct: 795 QILLAEDDETTGFSISRLLEKSGHSVTLAHNGQEALEMHEANNFDLILMDVSMPVMDGIA 854 Query: 64 LARRA----TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 RR D+ ++ +T +A A + ++KP + L+ Sbjct: 855 ACRRIRGSRNSHKRDVPIIALTAYAMAGDKEKFLAAGMSGYVAKPVTMETLM 906 >gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC 35316] gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC 35316] Length = 235 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 59/116 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL EDD D+ L L GY + +G +A + ++ + ++ D+++P +DG+ Sbjct: 2 KQILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSVDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 E+ RR ++ L V+ I+ ++ L+KPF +++L+ + L Sbjct: 62 EICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 117 >gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 234 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + RF+ + L +AGY V S +G + + L++ D+++PE+DG+ Sbjct: 2 RILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPELDGLS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + R+ V+ +T AV L KPF +L+ + L+ Sbjct: 62 VLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALM 116 >gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 15/115 (13%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L GYEV++ +G A ++ E P +L+ D+++P+ DG E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGP-DVLILDVMLPDTDGYE 60 Query: 64 LARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 L R E D D+ V+ +T + L D ++KPF+ +L+ Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADD-------YVTKPFNYAELI 108 >gi|192289583|ref|YP_001990188.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192283332|gb|ACE99712.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 795 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE---VVSCNNGASAYDKVREEPFSLLLTDIVMP 57 + +IL+ ED+ ++ +F + L GY V S + +A D+ E F L+ +D++MP Sbjct: 670 LGHRILVVEDNVEVGKFSTELLQDLGYTIKWVKSADEALAALDE-DEFAFDLVFSDVIMP 728 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +G+ELA E P L V+ +G+++V NA + +++ KP+ + + + R Sbjct: 729 GKNGVELATIIRERYPGLPVVLTSGYSSVLA---ENAHQGFELVQKPYSVEAISRVLRRA 785 Query: 118 LT 119 ++ Sbjct: 786 IS 787 >gi|154493674|ref|ZP_02032994.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184] gi|154086884|gb|EDN85929.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184] Length = 1348 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q +LLA+D+ ++ ++L + L Y VV NG A + E ++++DI+MPEM+G+ Sbjct: 1097 QTVLLADDNQEVLQYLEQQL-SLDYIVVKAFNGKEALAMIEESYPHIVISDIMMPEMNGL 1155 Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 EL +R E + V+ +T + ++ + + KPF + L + LL++ Sbjct: 1156 ELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNLLSL 1215 Query: 121 K 121 + Sbjct: 1216 R 1216 >gi|150003331|ref|YP_001298075.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931755|gb|ABR38453.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1345 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED++ MR F+ + L +A + V + NG A D +R L+++DI+MP M+G EL Sbjct: 1083 LLLVEDNESMRSFIFERL-EALFTVETAVNGQEALDILRSNHIDLVISDIMMPVMNGYEL 1141 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNRLLT 119 + E+ D+ + I A N + K+ + KPF L ++ LL+ Sbjct: 1142 CK---EIKADIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKTQILSLLS 1198 >gi|76800910|ref|YP_325918.1| response regulator [Natronomonas pharaonis DSM 2160] gi|76556775|emb|CAI48349.1| response regulator [Natronomonas pharaonis DSM 2160] Length = 120 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q++L+ +D R + ALG +EVV NG A + E+ L+ DI+MPEM Sbjct: 1 MTQRVLVVDDSSLQRTIITGALGDR-FEVVGEAENGQEAVELFEEKEPDLVTMDIMMPEM 59 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E D KVM T ++ + ++KPF +L++ L+ Sbjct: 60 DGVEATGEIKNRTDDTKVMMCTSVEQAEKMKEAVRAGADEYVTKPFDEDELLDTATTLV 118 >gi|89097898|ref|ZP_01170785.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89087400|gb|EAR66514.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 933 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 5/122 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60 N+ +L+ +DD+ L KAL G EV + NG + V ++ ++L DI+MP MD Sbjct: 809 NKSVLICDDDNRNIYALEKALKAEGMEVTTVQNGQECLEMVGQKRDIDIILMDIMMPVMD 868 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G E +R +D L+ M I A A+ D +A +SKP L L++ + Sbjct: 869 GYETMQRLRSMD-GLEQMPIIALTAKAMKGDKQKCLDAGASDYISKPLKLDQLLSVMRVW 927 Query: 118 LT 119 LT Sbjct: 928 LT 929 >gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+Q IL+ ED++ + RF+ LG GY V +G + + F L+L D+++P+++ Sbjct: 1 MSQTILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLPKLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK-VLSKPFHLRDLVNEV 114 G E+ RR + ++ +T +V ++ S A ++KPF + +L+ + Sbjct: 61 GTEVLRRIRRTSA-VPIIMLTARDSV-MDKVSGLDSGANDYITKPFAIEELLARI 113 >gi|326799457|ref|YP_004317276.1| response regulator receiver protein [Sphingobacterium sp. 21] gi|326550221|gb|ADZ78606.1| response regulator receiver protein [Sphingobacterium sp. 21] Length = 154 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 3 QKI-LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QKI +L DD++ KA + Y++ + G A +K++ F +++TD MP M G Sbjct: 4 QKIRILFVDDEEHNLISFKATFRTRYKIETAIGGLEAIEKLKNLEFDIIITDQRMPRMTG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNR 116 +E + + PD + +TG+ +A D+ N K L+KP++ +L + + + Sbjct: 64 VEFLEQIIQTHPDPVRILLTGYTDMAAVIDAINKGKIFHYLTKPWNEEELDSTIQK 119 >gi|315921700|ref|ZP_07917940.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695575|gb|EFS32410.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1334 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ ED+D++R +L + L + Y V C+NG A + E L+++DI+MPEM G Sbjct: 1068 HRRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIPEYKPELVISDIMMPEMRG 1126 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116 EL + + +++ I ALN + + ++ + KPF++ L V Sbjct: 1127 DELCQ---AIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVAN 1183 Query: 117 LL 118 LL Sbjct: 1184 LL 1185 >gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 233 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL ED++ + F+ LG GY+V+ +G A + ++E +L+L D ++P DGI Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + D+ ++ +T + + + ++KPF + +L + +L Sbjct: 67 VLRRIRK-QSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVIL 120 >gi|302344382|ref|YP_003808911.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] gi|301640995|gb|ADK86317.1| response regulator receiver protein [Desulfarculus baarsii DSM 2075] Length = 156 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 58/112 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LL +D++ + K L K GYE ++ +GA+A + + + +++ D+ MP MDG+E Sbjct: 5 KLLLVDDEERFLQTTAKLLVKKGYEPLTATSGAAALELMEAKHVDVVILDVKMPGMDGVE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 + P ++V+ +TG + + L+KP + +L+ + + Sbjct: 65 TLKHIKTRFPLVEVIMLTGHGTIDSAVEGMRTGAFDYLTKPCEIEELMTKAD 116 >gi|300787996|ref|YP_003768287.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797510|gb|ADJ47885.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 204 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +++L+AED+ +R L++ L + GYEVV +G A + L++ D+ MP++D Sbjct: 16 QRRVLVAEDEALIRLDLVEMLREEGYEVVGEAGDGEQAISLATDLKPDLVILDVKMPKLD 75 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 GIE A + T D V+ +T F+ L + L KPF RDLV Sbjct: 76 GIEAAAKITG-DRIAPVVILTAFSQRDLVERARDAGTMAYLVKPFAKRDLV 125 >gi|297579232|ref|ZP_06941160.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio cholerae RC385] gi|297536826|gb|EFH75659.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio cholerae RC385] Length = 1178 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 15/129 (11%) Query: 3 QKILLAEDDDDMRRFLIKA-LGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 Q +L DDD + R LIK L + G ++G A++K+ + P + LL+TD MP + Sbjct: 949 QGHVLVADDDPINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHL 1008 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSN-APKNA------KVLSKPFHLRDLVN 112 DG L R+ + ++ G DS A + A KV+ KP+ L +L Sbjct: 1009 DGFALTRKVKQ-----EISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRK 1063 Query: 113 EVNRLLTIK 121 ++R LT + Sbjct: 1064 VLSRYLTTQ 1072 >gi|258593855|emb|CBE70196.1| putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 452 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 12/119 (10%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 + L+ +D+ +R + L +AGY V +G A +++R F ++L D+ MP + G+E Sbjct: 12 RALVVDDERPIRLLMENELPRAGYMVTCAGSGEEALEQLRTREFDVILLDLKMPGIGGME 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVNR 116 RR + +V+ +TG +PD ++ A L+KPF L +L + R Sbjct: 72 ALRRIRDSGTSAEVVILTG------HPDVDSAIQAMKLGAYDYLTKPFKLVELEEVLRR 124 >gi|260886778|ref|ZP_05898041.1| DNA-binding response regulator DltR [Selenomonas sputigena ATCC 35185] gi|330839408|ref|YP_004413988.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260863377|gb|EEX77877.1| DNA-binding response regulator DltR [Selenomonas sputigena ATCC 35185] gi|329747172|gb|AEC00529.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 222 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 55/114 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+LLAED+ DM L+ L +GYEV + +G +A + ++ ++ D++MP MDG+ Sbjct: 2 KLLLAEDEKDMAAALVAVLEHSGYEVDAVRDGRAALALAHKGTYACMVFDVMMPVMDGVT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + V+ +T A V + L KPF + +L+ + L Sbjct: 62 ALKELRAAGDTTPVLLLTAKAEVGDRIEGLDAGADDYLPKPFAMGELLARLRSL 115 >gi|227877766|ref|ZP_03995799.1| two-component system regulator [Lactobacillus crispatus JV-V01] gi|256843617|ref|ZP_05549105.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256850093|ref|ZP_05555523.1| two-component system regulator [Lactobacillus crispatus MV-1A-US] gi|262047381|ref|ZP_06020338.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380726|ref|ZP_06626774.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|312984347|ref|ZP_07791689.1| DNA-binding response regulator CsrR [Lactobacillus crispatus CTV-05] gi|227862625|gb|EEJ70111.1| two-component system regulator [Lactobacillus crispatus JV-V01] gi|256615037|gb|EEU20238.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256713065|gb|EEU28056.1| two-component system regulator [Lactobacillus crispatus MV-1A-US] gi|260572355|gb|EEX28918.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290922690|gb|EFD99644.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|310894272|gb|EFQ43352.1| DNA-binding response regulator CsrR [Lactobacillus crispatus CTV-05] Length = 238 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 41/68 (60%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ ++ RF+ L YE V NNG + + F +L D+++P+++G+E Sbjct: 3 KILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNGLE 62 Query: 64 LARRATEL 71 +ARR ++ Sbjct: 63 IARRVRQV 70 >gi|225377629|ref|ZP_03754850.1| hypothetical protein ROSEINA2194_03280 [Roseburia inulinivorans DSM 16841] gi|225210493|gb|EEG92847.1| hypothetical protein ROSEINA2194_03280 [Roseburia inulinivorans DSM 16841] Length = 194 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 45/78 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD ++ + + L G+E + AYD++ + L+++DI+MPE+DG E Sbjct: 4 ILVVDDDKNLNQTVCTYLNDCGFEAKGVLSANEAYDEMYNNLYELIISDIMMPEIDGFEF 63 Query: 65 ARRATELDPDLKVMFITG 82 A +++ + ++F++ Sbjct: 64 AETVRQVNKQIPILFMSA 81 >gi|222086167|ref|YP_002544699.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221723615|gb|ACM26771.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 871 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62 +LL ED++ +RR + L GY V +G A + + E ++++D+VMPEMDG Sbjct: 754 VLLVEDEEAVRRGGKRMLETRGYTVYEAGSGVEALEIMEELDGQVDVVVSDVVMPEMDGP 813 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L + PD+K +F++G+A A N P +A+ L KPF L+ L V L Sbjct: 814 TLLGELRKKYPDMKFIFVSGYAEDAFA--RNLPADARFGFLPKPFSLKQLAVVVRETL 869 >gi|219855386|ref|YP_002472508.1| hypothetical protein CKR_2043 [Clostridium kluyveri NBRC 12016] gi|219569110|dbj|BAH07094.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 227 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 41/63 (65%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD+D+ + L + + GY+ C +G A +++++ F+L+L DI++P + G E Sbjct: 8 EILIVEDDNDINKILELIVKEQGYKATCCFSGTEAQLRLQQQSFNLILLDIMLPGLTGEE 67 Query: 64 LAR 66 L R Sbjct: 68 LLR 70 >gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098] gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098] Length = 254 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 I + +DD+++R L L + G+ + N + R P SL++ DI++P M+G+ Sbjct: 5 HTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGL 64 Query: 63 ELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 EL R RA P V+F+T + LSKPF R+L+ + +L Sbjct: 65 ELFRNLRAESTVP---VIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVL 119 >gi|170746815|ref|YP_001753075.1| two component, sigma54 specific, Fis family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653337|gb|ACB22392.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacterium radiotolerans JCM 2831] Length = 451 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++ +D+ D+RR ++L G+ V + A + P +++TD+ +P +DG Sbjct: 11 TERVVFVDDEADVRRANGQSLELEGFTVETFAAAEPALAAILAAPPGVVVTDVRLPGLDG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + L R +DPDL V+ ITG + + + L+KP+ LV V R L Sbjct: 71 VALLARLRRVDPDLPVILITGHGDIRMAVAAMQEGAYDFLAKPYPAEALVGSVRRAL 127 >gi|116626893|ref|YP_829049.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116230055|gb|ABJ88764.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 551 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMD 60 + +LL ED+ +R L GY V+ + + A V E+ P LLLTDIVMP M+ Sbjct: 431 ETVLLVEDEPQVRSLTRTMLTSRGYRVLEAASVSDALKIVAEQDRPIDLLLTDIVMPGMN 490 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G++LAR A P L+V+F++G+ + + KPF L L ++ +L+ Sbjct: 491 GMDLAREAAAARPALRVLFMSGYTEGGVIDRGVLDSETPFIQKPFTLSALDRKIREVLS 549 >gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 683 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILLAED +D R L+ L Y + NG A DK + + L+ DI MPEMDG Sbjct: 559 ILLAEDSEDNRLLLMSYLKSRPYRIDIAENGVIALDKFKTGRYDLVFMDIQMPEMDGYTA 618 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPD 91 R R E + L+ I A A D Sbjct: 619 TREIRKWEREHQLRETPIVALTAYAYKED 647 >gi|319408568|emb|CBI82221.1| two-component system response regulator [Bartonella schoenbuchensis R1] Length = 121 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+++ ED++ + + +GYE V NG A D R SL++ DI +PE+ Sbjct: 1 MLKKVMIVEDNELNMKLFRDLVEVSGYETVETRNGLIALDLARSTKPSLIIMDIQLPEVS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSN---APKNAKVLSKPFHLRDLVNEVNRL 117 GI++ ++ E D +LK + I A A+ D A + +SKP + + + Sbjct: 61 GIDVIKQLKE-DEELKSIPIVAVTAFAMKGDEERIRASGCEEYMSKPISVPHFITMLKSF 119 Query: 118 L 118 L Sbjct: 120 L 120 >gi|312793114|ref|YP_004026037.1| response regulator receiver protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877770|ref|ZP_07737721.1| response regulator receiver protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795447|gb|EFR11825.1| response regulator receiver protein [Caldicellulosiruptor lactoaceticus 6A] gi|312180254|gb|ADQ40424.1| response regulator receiver protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 117 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 +K+L+ +D +R L + L K G+EVV +C+ G S ++ ++ DI MPEMD Sbjct: 2 KKVLIVDDAAFVRYSLRQTLEKHGFEVVGEACD-GKSCIKLFQQLHPDIVTLDITMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFA 84 GIE+ ++ E+D + KV+ IT Sbjct: 61 GIEVLKKIMEIDKNAKVVMITALG 84 >gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 239 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ ++ + + L G+ S ++G A + E+ + LL+ D++MP +DG Sbjct: 5 TQRILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVMMPGLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ++AR+ D L ++F+T A + ++KPF +++L + +L Sbjct: 65 FDVARK-VRADRGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVL 120 >gi|257484183|ref|ZP_05638224.1| histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008262|gb|EGH88319.1| histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 534 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE-MD 60 ++IL+ ED D+ L GY N A K + LL TD++MP M+ Sbjct: 410 ERILIVEDRPDVAELAKMVLDDYGYICEIVLNAREALKKFESGSRYDLLFTDLIMPGGMN 469 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LAR P +KV+ TG+A ++ V+SKP +DL +V ++L Sbjct: 470 GVMLAREVRRRYPKIKVLLTTGYAESSIERTDIGGSEFDVVSKPCMPQDLARKVRQVL 527 >gi|254785217|ref|YP_003072645.1| type 4 fimbriae expression regulatory protein PilR [Teredinibacter turnerae T7901] gi|237687452|gb|ACR14716.1| type 4 fimbriae expression regulatory protein PilR [Teredinibacter turnerae T7901] Length = 461 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 58/114 (50%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ D+R L L + G +VVS N A A + + F++ LTD+ +P+ +GI+L Sbjct: 7 LIIDDEPDIRELLEITLARMGVDVVSAANIAEAKQALTKGGFNICLTDMKLPDGNGIDLV 66 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R + D +L V IT + ++ +SKP +L L ++ +T Sbjct: 67 RYIQKYDAELPVAVITAHGNMDTAIEAMKAGAFDFVSKPINLSALRKLIDTAIT 120 >gi|297564115|ref|YP_003683088.1| GAF sensor hybrid histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848564|gb|ADH70582.1| GAF sensor hybrid histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1478 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61 Q++L+ +DD L AL G EV+ +NG + K+ E +L+L D++MPE+DG Sbjct: 1304 QRVLIVDDDVRNVFALTSALEAQGLEVLYADNGHAGIAKLEANEDIALVLMDVMMPELDG 1363 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + +R E+ P + I A A+ D S A ++KP L L++ + R L Sbjct: 1364 NQTTQRIREM-PQFAGLPIISLTAKAMQGDRERSLAAGATDYVTKPVDLDHLLDVMRRWL 1422 Query: 119 T 119 T Sbjct: 1423 T 1423 >gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 509 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 55/114 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +DD+ + L K L + Y V +G +A++ V + L+L D+++P++DGI Sbjct: 2 RILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVMLPKLDGIS 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR E + VM +T + KPF++++L V L Sbjct: 62 FCRRLREQKSPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARVPAL 115 >gi|220910097|ref|YP_002485408.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219866708|gb|ACL47047.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 382 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR-- 66 +D ++R + L +GY V+ A A + +P +L+L DI MP++DG EL R Sbjct: 263 DDSKTVQRNVRLILETSGYHVLELTEPARALTTLVRQPPALVLMDISMPDIDGYELCRML 322 Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 R + L D+ ++ +TG + + L+KPF+ +DL++ +L+ Sbjct: 323 RQSNLLKDVPIVMLTGRDGLIDRLRARMVGATDYLTKPFNPQDLLSVAEKLI 374 >gi|254424116|ref|ZP_05037834.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191605|gb|EDX86569.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 534 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L L + Y+V S G++ P L+L DI MPEM+G E+ Sbjct: 34 ILVIDDTPENLHLLSTMLSERQYKVRSVTKGSTGLRGAIAAPPDLILLDINMPEMNGYEV 93 Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +A E D+ V+FI+ V ++ ++KPFH+ +++ + LT+ Sbjct: 94 CEQLKAHETTCDIPVIFISALGDVLDKVNAFNVGGVDFITKPFHVDEVLARIQTHLTL 151 >gi|168047701|ref|XP_001776308.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162672403|gb|EDQ58941.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 1148 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMP 57 +++IL+ +D+ RR L K G V S N GA A D V+ +E L++ DI MP Sbjct: 921 DKRILVVDDNMVNRRVATSMLKKYGAIVSSVNGGAEAVDAVKNRKEDEKLDLIVMDIQMP 980 Query: 58 EMDGIELARR 67 EMDG E RR Sbjct: 981 EMDGWEATRR 990 >gi|163756235|ref|ZP_02163350.1| sensory box histidine kinase/response regulator [Kordia algicida OT-1] gi|161323847|gb|EDP95181.1| sensory box histidine kinase/response regulator [Kordia algicida OT-1] Length = 782 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+AED+ + F+ + L K E NG A + V+ + F L+L DI MP +DG Sbjct: 659 NKKILVAEDNKLNQLFIKQLLKKWDAETTIVENGQEAVEIVKSQDFDLILMDIQMPVLDG 718 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRLL 118 +E L+ + K + I +A + A V ++KP + +NE+ LL Sbjct: 719 LEATIAIRALEKEKKKIPIVACSADVFPESRQKAEEAGVNYYITKPISAKS-INEILYLL 777 Query: 119 T 119 T Sbjct: 778 T 778 >gi|217971454|ref|YP_002356205.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|217496589|gb|ACK44782.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] Length = 219 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 54/115 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL EDD D+ LI AL KAGY V +NG EE F ++ D+ +P G+ Sbjct: 2 RLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGLH 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + + + + V+ +T A D L KPFH+ +L+ + L+ Sbjct: 62 VLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLI 116 Searching..................................................done Results from round 2 >gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] gi|254039989|gb|ACT56785.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD Sbjct: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 Query: 121 KN 122 KN Sbjct: 121 KN 122 >gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 60/118 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + L + L G+ V + ++G A RE+P L++ DI+MP MDG+ Sbjct: 72 ERILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGL 131 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ +R DP+L V+F+T A A + KPF LV V LL Sbjct: 132 EVLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRR 189 >gi|315122264|ref|YP_004062753.1| response regulator receiver protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495666|gb|ADR52265.1| response regulator receiver protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 120 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 112/120 (93%), Positives = 118/120 (98%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDD+DMRRFLIKALG AGYEV+SCNNGASAYDK+REEPFSLLLTDIVMPEMD Sbjct: 1 MNQKILLAEDDNDMRRFLIKALGNAGYEVISCNNGASAYDKIREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIELAR+ATELDPDLKVMFITGFAAV+LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL + Sbjct: 61 GIELARKATELDPDLKVMFITGFAAVSLNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLAV 120 >gi|158320115|ref|YP_001512622.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140314|gb|ABW18626.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus oremlandii OhILAs] Length = 451 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 65/120 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++IL+ +D+ +MR + KAL K GY + NG +K+ E L+L D+ MP MD Sbjct: 1 MNKRILIIDDEKNMRWAIKKALEKEGYNIYEAENGQDGLEKLEEIYPDLILLDLRMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E +R E++ D+ V+ +T + ++ +SKPF + +L + + L + Sbjct: 61 GMEALQRIKEINQDIPVIMLTAHGTMESAVEAMKLGALDYISKPFDIEELKVLIKKALNV 120 >gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 237 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++++R + L + GYEV + NG +D + L++ D++MP+ D Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T ++KPF R+LV V +L Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRR 119 Query: 121 KN 122 N Sbjct: 120 GN 121 >gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+ +D+ + + + L K G+ V ++G +A +KV E P L++ D+++P+MD Sbjct: 2 MSKKVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ ++ + + L ++ +T ++KPF R+LV V +L Sbjct: 62 GLEVCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRR 121 >gi|323703413|ref|ZP_08115061.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323531594|gb|EGB21485.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 454 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 65/118 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D++ M L K L + GY+V++ G + +R E SL++ D+ MPEMD Sbjct: 1 MTRKILVIDDEEHMCWALEKGLRQEGYQVLTATRGKQGLELIRNEVPSLVILDLKMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ RA E+ P L V+ IT + ++ ++KPF L +L V + L Sbjct: 61 GLEVLVRAKEMMPKLPVIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKLVVKQAL 118 >gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 244 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +L+ +D+ ++ L +L AGY+V + +G A K RE L++ D++MP +D Sbjct: 12 MSPHLLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMPGLD 71 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR D + V+F+T AV ++KPF L +LV V LL Sbjct: 72 GFEVVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRR 131 >gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ ED+ + R L L GY+V +NG A + R + L+L D+++P M Sbjct: 1 MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIEL RR D V+ +T ++V ++KPF + +L+ + L + Sbjct: 61 GIELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRL 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter carbinolicus DSM 2380] gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 391 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+ + + L G+EV++ ++G + V +E L+L D +MP MD Sbjct: 1 MSSRILVVDDEAIILQLATMVLTSRGFEVLTAHSGQECLEIVEQESPDLVLLDYMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ R + PD V+ +TG + + D A + KPF +DLV + +L I Sbjct: 61 GMTTLRHLRQAHPDTYVIMLTGKGSEQIAVDVMKAGAADYILKPFKNQDLVERIENVLRI 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 232 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ ED+ + R L L GY+V +NG A + R + L+L D+++P M Sbjct: 1 MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIEL RR D V+ +T ++V ++KPF + +L+ + L + Sbjct: 61 GIELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRL 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 264 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 53/121 (43%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ +R L ++L GY V +G A K P L++ DI MP MDG Sbjct: 32 QQRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDG 91 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ARR + V+ +T V L KPF L +L + LL Sbjct: 92 LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 151 Query: 122 N 122 + Sbjct: 152 S 152 >gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 58/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+I + +DD+ + L ++L GYEV N+G + + LL+ D++MP+MD Sbjct: 1 MRQRIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GWEVCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRR 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 248 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ ED++++R + L + GYEV + NG +D L+L D++MP+ D Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMPKKD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T ++KPF R+LV V +L Sbjct: 69 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKR 127 Query: 121 KN 122 N Sbjct: 128 GN 129 >gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +DD + RFL L +EV++ NNG A +E L++ D++MP MD Sbjct: 1 MKPKVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVMMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ R EL D+ ++ +T + L+KPF +L + +L Sbjct: 61 GWEVCSRLHEL-SDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILAR 119 >gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 237 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++++R + L + YEV + NG +D L++ D++MP+ D Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T L+KPF R+LV V +L Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 119 >gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 406 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +G A R+ ++ DI++P+MDG+E Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGLE 219 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR PD+ V+F+T AV ++KPF L +LV + L+ Sbjct: 220 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRR 276 >gi|320354561|ref|YP_004195900.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123063|gb|ADW18609.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 460 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN IL+ +D+ MR FL L K GY+V + +G +A ++ + F L++TDI MP M Sbjct: 1 MNMASILVVDDELSMREFLKILLEKEGYQVATAADGQAALERAEKTAFDLVITDIRMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G++L R +L D+ V+ IT FA+ + ++KPF++ ++ + +L Sbjct: 61 SGLDLLARLKQLQADIGVIMITAFASPDDAVTAMKSGAFDYITKPFNVDEIKTVIRAVLK 120 Query: 120 IK 121 + Sbjct: 121 KR 122 >gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 237 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++++R + L + YEV + NG +D L++ D++MP+ D Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T L+KPF R+LV V +L Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 119 >gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 237 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++++R + L + YEV + NG +D L++ D++MP+ D Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T L+KPF R+LV V +L Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 119 >gi|189424753|ref|YP_001951930.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189421012|gb|ACD95410.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 472 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 71/119 (59%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D+ +R + + L ++V + NG +A +++++EPF L++TD+ MP + G+ Sbjct: 5 KKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGM 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ + E+ PDL V+FITG+++V + ++KPF ++++ + L + Sbjct: 65 EVLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQR 123 >gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces clavuligerus ATCC 27064] Length = 342 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 51/120 (42%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R L ++L GY +G A K LL+ DI MP MDG+ Sbjct: 107 ERILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGL 166 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR + V+ +T V L KPF L +L + LL + Sbjct: 167 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 226 >gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 340 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 51/120 (42%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R L ++L GY +G A K LL+ DI MP MDG+ Sbjct: 105 ERILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGL 164 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR + V+ +T V L KPF L +L + LL + Sbjct: 165 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 224 >gi|94264089|ref|ZP_01287888.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455505|gb|EAT05695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 493 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 69/122 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ +MR L +AL ++G++V NG A + + ++P L++TDI MPEMD Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ P L V+ ITG+A V ++ + KPF + + V ++ Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQ 120 Query: 121 KN 122 + Sbjct: 121 RQ 122 >gi|94269909|ref|ZP_01291598.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451023|gb|EAT01990.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 493 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 69/122 (56%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ +MR L +AL ++G++V NG A + + ++P L++TDI MPEMD Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ P L V+ ITG+A V ++ + KPF + + V ++ Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQ 120 Query: 121 KN 122 + Sbjct: 121 RQ 122 >gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 237 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++++R + L + YEV + NG +D L++ D++MP+ D Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T L+KPF R+LV V +L Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 119 >gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 244 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 53/121 (43%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ +R L ++L GY V +G A K P L++ DI MP MDG Sbjct: 12 QQRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ARR + V+ +T V L KPF L +L + LL Sbjct: 72 LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131 Query: 122 N 122 + Sbjct: 132 S 132 >gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 232 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V + N+G +K + ++L D++MP MDG Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ RR +L + VM +T + KPF +++V + +L Sbjct: 63 LEVCRRIRKLG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120 >gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4] gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4] Length = 231 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +D+ +MR + L K GY +V NG A +++ F L++ D++MPEMD Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + + L ++ +T L+KPF +L+ VN LL Sbjct: 61 GWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRR 120 >gi|332982072|ref|YP_004463513.1| Fis family two component sigma-54 specific transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699750|gb|AEE96691.1| two component, sigma54 specific, transcriptional regulator, Fis family [Mahella australiensis 50-1 BON] Length = 449 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D++ MR L KAL + YE + +G + + L+L D+ +P MD Sbjct: 1 MPHRILIIDDEERMRWVLCKALEQESYEAEAAGDGIEGLKMLDKHSIDLVLLDMRLPIMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ +R EL P L V+ IT + ++ + + ++KPF + +LV ++ + L + Sbjct: 61 GMEVLKRIKELYPSLPVIIITAYGSIEMAVAAVKAGATDYITKPFDIDELVIQIKKALDV 120 >gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +R + L G+ V+ +GA VRE+ L++ D++MPEMDG Sbjct: 6 QRRILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ RR E + V+ +T L+KPF++ +L + LL Sbjct: 66 WEVCRRLREF-SQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRR 123 >gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18] gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 234 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP MDG E Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E V+F+T A ++KPF L +++ + +L Sbjct: 66 VTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRR 122 >gi|159185932|ref|NP_356752.2| chemotaxis response regulator [Agrobacterium tumefaciens str. C58] gi|159141066|gb|AAK89537.2| chemotaxis response regulator [Agrobacterium tumefaciens str. C58] Length = 120 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 104/118 (88%), Positives = 113/118 (95%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDD+DMRRFL+KAL KAGY+V S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MNQKILLAEDDNDMRRFLVKALEKAGYKVSSFDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIELARRATELDPDLKVMFITGFAAVALN DS APK+AKVLSKPFHLRDLV+EVN+LL Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNADSKAPKDAKVLSKPFHLRDLVDEVNKLL 118 >gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 233 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ EDD +R L + L GY V + G A + P L++ D+++P MD Sbjct: 1 MSARILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR P + V+ +T ++ ++KPF L +LV V L Sbjct: 61 GLEVCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRR 120 >gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match) [Frankia alni ACN14a] Length = 358 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +G A RE ++ DI++P+MDG+E Sbjct: 20 RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGLE 79 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR PD+ V+F+T AV ++KPF L +LV + L+ Sbjct: 80 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRR 136 >gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++I++ ED+D++R + L + GYEV + NG ++ ++ L++ D++MP+ D Sbjct: 1 MKKRIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T ++KPF R+LV V +L Sbjct: 61 GWELCEEIRQ-YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRR 119 Query: 121 KN 122 N Sbjct: 120 GN 121 >gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 244 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 53/121 (43%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ +R L ++L GY V +G A + P L++ DI MP MDG Sbjct: 12 QQRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ARR + V+ +T V L KPF L +L + LL Sbjct: 72 LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131 Query: 122 N 122 + Sbjct: 132 S 132 >gi|222149748|ref|YP_002550705.1| chemotaxis response regulator [Agrobacterium vitis S4] gi|221736730|gb|ACM37693.1| chemotaxis response regulator [Agrobacterium vitis S4] Length = 121 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 104/119 (87%), Positives = 113/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKILLAEDD+DMRRFL+KAL KAGY+V S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MTQKILLAEDDNDMRRFLVKALEKAGYKVSSYDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALN DS APK+AKVLSKPFHLRDLV+EVN+LLT Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNADSKAPKDAKVLSKPFHLRDLVDEVNKLLT 119 >gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 244 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 53/121 (43%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ +R L ++L GY V +G A K P L++ DI MP MDG Sbjct: 12 QQRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMPGMDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ARR + V+ +T V L KPF L +L + LL Sbjct: 72 LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131 Query: 122 N 122 + Sbjct: 132 S 132 >gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 228 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 55/120 (45%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL ED+ M L + L + GY V G A ++ +LL+ D+ +P MD Sbjct: 1 MPRPILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ + PDL V+ +T V L KPF +L+ + LL Sbjct: 61 GVEVCRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRR 120 >gi|222087102|ref|YP_002545637.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724550|gb|ACM27706.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 121 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 103/119 (86%), Positives = 114/119 (95%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKILLAEDD+DMRRFL+KAL KAGY+V+S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 2 MTQKILLAEDDNDMRRFLVKALEKAGYKVLSFDNGASAYDRLREEPFSLLLTDIVMPEMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLR+LV+EVN+LL Sbjct: 62 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRELVDEVNKLLA 120 >gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 231 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ + E D+ VM IT ++KPF +R+L+ V LL Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 IKN 122 N Sbjct: 123 RSN 125 >gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +R L L G+ V+ +GA VR++ L++ D++MPEMDG Sbjct: 6 QRRILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ RR E + V+ +T L+KPF++ +L + LL Sbjct: 66 WEVCRRLREF-SQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRR 123 >gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 251 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY VV+ +G A K R+E L++ D++MP++DG Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVMMPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 69 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 231 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ + E D+ VM IT ++KPF +R+L+ V LL Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 IKN 122 N Sbjct: 123 RSN 125 >gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 231 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ + E D+ VM IT ++KPF +R+L+ V LL Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 IKN 122 N Sbjct: 123 RSN 125 >gi|332716601|ref|YP_004444067.1| chemotaxis response regulator [Agrobacterium sp. H13-3] gi|325063286|gb|ADY66976.1| chemotaxis response regulator [Agrobacterium sp. H13-3] Length = 121 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 104/118 (88%), Positives = 113/118 (95%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDD+DMRRFL+KAL KAGY+V S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 2 MNQKILLAEDDNDMRRFLVKALEKAGYKVSSFDNGASAYDRLREEPFSLLLTDIVMPEMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIELARRATELDPDLKVMFITGFAAVALN DS APK+AKVLSKPFHLRDLV+EVN+LL Sbjct: 62 GIELARRATELDPDLKVMFITGFAAVALNADSKAPKDAKVLSKPFHLRDLVDEVNKLL 119 >gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] Length = 237 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +I + ED+D++R + L GYEV + NG ++ ++ L++ D++MP+ D Sbjct: 1 MTTRIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T A ++KPF R+LV V LL Sbjct: 61 GWELCEEIRQ-HSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRR 119 Query: 121 KN 122 N Sbjct: 120 GN 121 >gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 228 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ MR L+ L K Y+ + +NG A D ++ + F L+L D++MPEMDG+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R E ++ ++ +T + ++KPF R+L+ + L + Sbjct: 67 ACMRIREF-SNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSH 124 >gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 231 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ + E D+ VM IT ++KPF +R+L+ V LL Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 IKN 122 N Sbjct: 123 RSN 125 >gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 232 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V N+G +K + ++L D++MP+MDG Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ RR + + VM +T + KPF +++V + +L Sbjct: 63 LEVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13] Length = 231 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ + E D+ VM IT ++KPF +R+L+ V LL Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 IKN 122 N Sbjct: 123 RSN 125 >gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V N+G +K ++L D++MP MDG Sbjct: 3 NEKILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ RR + + VM +T + KPF +++V + +L Sbjct: 63 LEVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 231 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY+ NG A + +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ + E D+ VM IT ++KPF +R+L+ V LL Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 IKN 122 N Sbjct: 123 RSN 125 >gi|258593741|emb|CBE70082.1| putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 460 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 63/117 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ +R FL L K GY V++ ++G A + + + L+++D+ MP+MDGI Sbjct: 2 ETILVVDDEQGIREFLTVLLEKQGYRVITASDGERALELIAHQSPDLVISDVRMPKMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 L + DP L V+ +T +A++ + ++KPF + ++ V + L Sbjct: 62 GLLTGIRKTDPHLPVIMVTAYASMDSTIQAMRLGAHDYITKPFRIDEIRLVVEKALA 118 >gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V + N+G DK + ++L D++MP+MDG Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ RR +L + VM +T + KPF +++V + +L Sbjct: 63 LEVCRRIRKLG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120 >gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] Length = 235 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+AEDD + L+ L GY+V+ ++G A D + PF L+L DI+MP Sbjct: 1 MMAHILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMPGKS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ R D D+ ++ +T ++KPF + +L+ + +L Sbjct: 61 GYDVCREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVLRR 120 >gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 249 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ +D+ +RR L L GYE+V +G A ++ E L++ D++MP M+G Sbjct: 4 QHKILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +++ + E + ++ +T V+ L KPF ++L + + +L Sbjct: 64 LQVCQTLREST-GVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRR 121 >gi|150391003|ref|YP_001321052.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950865|gb|ABR49393.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus metalliredigens QYMF] Length = 449 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +D+ +MR + KAL Y+V NG +K +E L+L D+ MP MD Sbjct: 1 MN-KILIVDDEKNMRWAMKKALKTEDYQVFEAANGQEGVEKFQELQPDLVLLDLKMPVMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E ++ +D + V+ IT ++ +SKPF + +L +++ L + Sbjct: 60 GLEALQKMKGIDEHIPVIMITAHGTTESAVEAMKLGAIDYISKPFDIEELKIVIHKALQV 119 Query: 121 K 121 K Sbjct: 120 K 120 >gi|95931065|ref|ZP_01313792.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132874|gb|EAT14546.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 471 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 72/122 (59%), Gaps = 1/122 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q +IL+ +D+ +R + + L + GYEV++ +G +A +KV+ + F+++++D+ MP M Sbjct: 1 MSQPRILVVDDEAVIREAVKRILEQEGYEVITATSGHTALEKVQIDDFTVVISDLKMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E+ + L PD+ V+ ITG+A V D+ LSKPF + VN+ + Sbjct: 61 GGMEVLKSIKILQPDVPVIIITGYATVETAVDAIKNGAFDYLSKPFTPPQVKEMVNKAIE 120 Query: 120 IK 121 + Sbjct: 121 QR 122 >gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 231 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +D++ +R + L K GY++ NG A + +RE F L+L D+++PE+DG Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ + E D+ VM IT ++KPF +R+L+ V LL Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 IKN 122 N Sbjct: 123 RSN 125 >gi|317494184|ref|ZP_07952600.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917957|gb|EFV39300.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 464 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M+Q +IL+ +D+ ++ R L + G +V +NG A +E ++L DI MP Sbjct: 1 MSQPCRILIVDDEKNVLRMLNTVFSQEGNQVFCADNGQDALAIFEQERPDVVLMDIRMPT 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M+G+E +R E D ++ +T +AAV ++ + KPF L +L +NR L Sbjct: 61 MNGLEALQRMREKWLDTPIILMTAYAAVETAVEALRLGAFDYVIKPFELDELKLLINRAL 120 Query: 119 TIKN 122 ++N Sbjct: 121 QLRN 124 >gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +AL G+E + ++G A K +++ D+ MP MDG+E Sbjct: 10 RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R DP + V+F+T AVA ++KPF L ++ V LL Sbjct: 70 TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRR 126 >gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 221 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL EDD +R+F+ L GYEV + G A D++ +E ++L D+++PEM+ Sbjct: 1 MKAKVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMN 60 Query: 61 GIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G + R E +L V+ +T + + KPFH+ +L+ + +L Sbjct: 61 GFTVLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLR 120 Query: 120 IK 121 K Sbjct: 121 RK 122 >gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 256 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +++L+ ED++++R + L + YEV + NG +D L++ D++MP+ D Sbjct: 20 MKRRVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLMMPKKD 79 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T ++KPF R+LV V +L Sbjct: 80 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRR 138 >gi|189426125|ref|YP_001953302.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189422384|gb|ACD96782.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 454 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD +RR L L +AGYEV + +G + + L+++D+ MP MD Sbjct: 1 MHPTILIIDDDASLRRVLEYQLQEAGYEVATAASGEEGLARFSDLAPQLVISDMQMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ + E P+ V+ IT F +V + + ++KPF+ +L V R L + Sbjct: 61 GMQVLKTVKERSPETPVIIITAFGSVDVAVQAMKQGAYDYITKPFNRDELHLTVARALHL 120 >gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY+V N+G +K ++L D++MP MDG Sbjct: 3 NEKILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ RR + + VM +T + KPF +++V + +L Sbjct: 63 LEVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 245 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + E L++ D++MP++DG Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVMMPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D D+ ++ +T VA + KPF ++L + +L Sbjct: 69 YGVCQELRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 246 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R L ++L GYEV + +G +A + V + +++ D++MP MDG+E Sbjct: 2 RVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR D+ V+ +T +A L KPF L +L + L+ Sbjct: 62 TCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRR 118 >gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 248 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ ED++++R + L + GYEV + NG +D L+L D++M + D Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMSKKD 68 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + ++ ++ +T ++KPF R+LV V +L Sbjct: 69 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKR 127 Query: 121 KN 122 N Sbjct: 128 GN 129 >gi|153871532|ref|ZP_02000680.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] gi|152071998|gb|EDN69316.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] Length = 594 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 MNQ K+L+ +D+ + L + L KA +EV+ NG SA +V+ ++L DI+MP Sbjct: 1 MNQEQNKVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQVKNLKPDIILLDIMMP 60 Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 MDG E R E D+ V+F+T + ++KP + +++ VN Sbjct: 61 GMDGFETCRCLKANEESKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQMEEVLARVN 120 Query: 116 RLLTIKN 122 LTI++ Sbjct: 121 THLTIRH 127 >gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family [Bacillus pseudofirmus OF4] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + +IL+ ED+ MR L L K GY V G A +KV + +S++L D++MPEM Sbjct: 1 MKEIRILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R ++ + V+ +T L+KPF +L+ V +L Sbjct: 61 DGFEVCREIRKV-SQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|78223656|ref|YP_385403.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194911|gb|ABB32678.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 461 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +RR L L + GYEV++ +G + +L++TD+ MP M G + Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQ 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L R E PD V+ IT F AV ++ ++KPF+ L V + L ++ Sbjct: 70 LLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQ 127 >gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 240 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 55/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + +G A LL+ D++MP +DG Sbjct: 13 RLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPGLDGFG 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E V+F+T A ++KPF L +++ + +L Sbjct: 73 VVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRR 129 >gi|268317350|ref|YP_003291069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodothermus marinus DSM 4252] gi|262334884|gb|ACY48681.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodothermus marinus DSM 4252] Length = 461 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ +RR L + L GY V +G A +K+RE + L+L DI MP D Sbjct: 1 MAATILVVDDERSIRRTLREILEYEGYAVEEAADGDEALEKLREGRYDLVLLDIKMPRRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R P+L V+ I+G + ++ + KP L L+ V L Sbjct: 61 GMEVLRTLAAEQPELPVVMISGHGTIETAVEATRLGAFDFIEKPPDLNRLLLTVRNALER 120 >gi|39995705|ref|NP_951656.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982469|gb|AAR33929.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298504717|gb|ADI83440.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 470 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R L + L K GY V + +G A +++++E + L++TD+ MP M G+E+ Sbjct: 6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDENYGLVITDLKMPGMSGMEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L P++ V+ ITGF+ V ++ ++KPF + +V + L + Sbjct: 66 LKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQITEKVRKALEQR 122 >gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 242 Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 231 Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD + + + L + G+ V +GA A + +P LL+ D+++P+MD Sbjct: 1 MSARILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDPPDLLVLDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R+ E P + V+ +T ++KPF R+L V +L Sbjct: 61 GLQVCRKLRERWP-VPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRR 119 >gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 382 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+A+D+ D L K L GY++ + +G A V +E LL+ DI+MP++D Sbjct: 27 MKKKILIADDNPDNVELLRKRLSAQGYQIAAAFDGEEALQAVLKENPDLLILDIMMPKLD 86 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ RR + D +L V+ +T + ++KPF+ ++L+ V L+ Sbjct: 87 GYEVLRRLKKQDEYRNLPVILLTAKKEIPDKLKGLDIGADDYITKPFNPQELLARVRSLM 146 Query: 119 TIK 121 ++ Sbjct: 147 ALR 149 >gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL GY+V ++G A D +R LL+ D++MP MDG Sbjct: 12 RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGFT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR E D+ V+ +T AV + ++KPF L +LV V +L Sbjct: 72 LLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRR 128 >gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMDG E Sbjct: 3 RILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R + D D+ ++ +T L KPF +LV V LL Sbjct: 63 LCRELRDYD-DVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKR 118 >gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 243 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KERILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|89901514|ref|YP_523985.1| Fis family two component sigma-54 specific transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346251|gb|ABD70454.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodoferax ferrireducens T118] Length = 474 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D++ + R ++ L Y V S G A KV E + +L+ D++MP+MD Sbjct: 1 MSARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + E P++ V+ +TG + + + LSKPF +L VNR L Sbjct: 61 GLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALER 120 Query: 121 KN 122 + Sbjct: 121 RQ 122 >gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 232 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ ++ + L +G++V++ ++G A D V++E L++ DI++P +DG Sbjct: 3 KEKILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLPGIDG 62 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +E+ R D+ V+ +T ++KPF R+LV V +L Sbjct: 63 LEVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLR 122 Query: 120 I 120 Sbjct: 123 R 123 >gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 242 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + +G SA R+ L++ D+++P+MDG Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGFS 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E + V+F+T A ++KPF L ++V + +L Sbjct: 71 VTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127 >gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402] gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402] Length = 235 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+D +R+ L + GYE V +G A + E F +L DI++P MD Sbjct: 1 MKEKILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++ +R E V+ +T + + KPF R++V V +L Sbjct: 61 GIQVCKRLREEKS-TPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRR 119 >gi|78224120|ref|YP_385867.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195375|gb|ABB33142.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 470 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 66/117 (56%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R L + L K G+ V + +G A ++++EE FSL++TD+ MP M G+E+ Sbjct: 6 VLVVDDEAVIREGLRRILEKEGFHVETSASGQIALERMQEENFSLVITDLKMPGMSGMEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + L P++ V+ ITGF+ V ++ ++KPF + +V + L + Sbjct: 66 LKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPEQITEKVRKALDQR 122 >gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI] gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 357 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L G+ V +G A + + + LL+ D++MP +DG Sbjct: 128 KILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMPGVDGWS 187 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R + L ++ +T A + KPF R+LV V +L Sbjct: 188 VCREVRKTT-ALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRSQ 245 >gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] Length = 247 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD +R L K L + GY V + +G + E F++++ DI++P DG Sbjct: 8 NKKILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIMLPGEDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + RR + ++ +T + + KPF+ R+L+ +N +L Sbjct: 68 LSICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRR 126 >gi|86359166|ref|YP_471058.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|116253830|ref|YP_769668.1| two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|190893412|ref|YP_001979954.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|209550901|ref|YP_002282818.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218463813|ref|ZP_03503904.1| response regulator receiver protein [Rhizobium etli Kim 5] gi|218510775|ref|ZP_03508653.1| response regulator receiver protein [Rhizobium etli Brasil 5] gi|218663747|ref|ZP_03519677.1| response regulator receiver protein [Rhizobium etli IE4771] gi|218674800|ref|ZP_03524469.1| response regulator receiver protein [Rhizobium etli GR56] gi|218678100|ref|ZP_03525997.1| response regulator receiver protein [Rhizobium etli CIAT 894] gi|241206312|ref|YP_002977408.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|86283268|gb|ABC92331.1| probable two-component response regulator protein [Rhizobium etli CFN 42] gi|115258478|emb|CAK09582.1| putative two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|190698691|gb|ACE92776.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] gi|209536657|gb|ACI56592.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240860202|gb|ACS57869.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|327189628|gb|EGE56778.1| two-component response regulator protein [Rhizobium etli CNPAF512] Length = 120 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 103/119 (86%), Positives = 114/119 (95%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QKILLAEDD+DMRRFL+KAL KAGY+V+S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MTQKILLAEDDNDMRRFLVKALEKAGYKVLSYDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLV+EVN++L Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVDEVNKMLA 119 >gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 247 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVMMPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 69 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ + L + L GY V + +G DK R+ P L++ D+++PEM G E Sbjct: 7 RILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMSGEE 66 Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + RR E LDPDL ++ +T A ++KPF+ +L+ + L + Sbjct: 67 VCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRRQ 126 >gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] Length = 236 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ +D+ + L L K G+EV +G A ++V++E L+L DI++P D Sbjct: 1 MDKRILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKSY-DIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|134299369|ref|YP_001112865.1| two component sigma-54 specific Fis family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052069|gb|ABO50040.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum reducens MI-1] Length = 448 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D++ M L +ALG GY+V++ G + E SL++ D+ MP++ Sbjct: 1 MIPRILVIDDEERMCWALERALGHEGYQVITATRGLRGIELAHETEPSLVILDLKMPDIT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ ++ ++ V+ IT + ++ ++KPF L +L +V + L + Sbjct: 61 GIEVLKKIKSINSNIPVIMITAHGTIETAIEAMKFGATDYITKPFKLDELKVQVKQALHL 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|217977418|ref|YP_002361565.1| response regulator receiver protein [Methylocella silvestris BL2] gi|217502794|gb|ACK50203.1| response regulator receiver protein [Methylocella silvestris BL2] Length = 138 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 97/119 (81%), Positives = 107/119 (89%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD DMRRFL KAL AGY+V + +NG SAY ++REEPF LLLTDIVMPEMDGIE Sbjct: 16 KILLAEDDGDMRRFLGKALQNAGYQVAAFDNGLSAYSRLREEPFELLLTDIVMPEMDGIE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 LARRATELDPD+KVMFITGFAAVALNPD+NAP AKVLSKPFHL+DLVNEV RLLT++N Sbjct: 76 LARRATELDPDIKVMFITGFAAVALNPDNNAPPQAKVLSKPFHLKDLVNEVQRLLTVEN 134 >gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] Length = 345 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +DD + + L +AGY V +G SA + L++ D+++P MDG+E Sbjct: 15 HVLVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLMLPGMDGLE 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E + V+ +T ++KPF R+LV V +L Sbjct: 75 VCRRLRE-RAAVPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRR 130 >gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 244 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 2/124 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L +AGY V++ +G SA D R E L++ DI++P MD Sbjct: 1 MARKILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLPGMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ R+ + ++ +T ++KPF R+L+ V L+ Sbjct: 61 GLEVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALI 120 Query: 119 TIKN 122 + Sbjct: 121 RRSD 124 >gi|153011599|ref|YP_001372813.1| response regulator receiver protein [Ochrobactrum anthropi ATCC 49188] gi|239834517|ref|ZP_04682845.1| response regulator receiver protein [Ochrobactrum intermedium LMG 3301] gi|151563487|gb|ABS16984.1| response regulator receiver protein [Ochrobactrum anthropi ATCC 49188] gi|239822580|gb|EEQ94149.1| response regulator receiver protein [Ochrobactrum intermedium LMG 3301] Length = 130 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 93/116 (80%), Positives = 110/116 (94%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL KAGY V +NGASAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 12 KRILLAEDDNDMRRFLVKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGI 71 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDLK+MFITGFAAVALNPDS+AP++AKVLSKPFHLRDLVNE+ ++L Sbjct: 72 ELARRATEIDPDLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 127 >gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1114 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L L AGY V + NG A V E+ L+L DI+MPEM G E+ Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVEEQRPDLILLDIMMPEMSGYEV 766 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +L +M ++ + L+KPF+ +L+ + L Sbjct: 767 CTILRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQ 823 >gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5] gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 59/121 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD+ + L + L GY+V++ +NGA + E +++ D++MP++D Sbjct: 1 MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRR 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 228 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED++ ++ L L K GY V + +G A K R L++ DI++P+ D Sbjct: 1 MASTILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + R + + ++ +T + + KPF +LV V +L Sbjct: 61 GWTVCREIRAM-SNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRR 119 >gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169] gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1] gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1] gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1] gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1] gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7] gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8] gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1] gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72] gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E] Length = 244 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD +R L + L GY V ++G + E FSL++ D+++P+ D Sbjct: 8 MTHRILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPDED 67 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI + +R + + ++ +T + A L KPF+ ++L+ + +L Sbjct: 68 GIAICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 127 Query: 121 KN 122 +N Sbjct: 128 QN 129 >gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 243 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY VV+ +G A + REE L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 244 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ +R + L GY+V+ NG A E L++ DI+MPE+D Sbjct: 18 MQKTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELD 77 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + RR + ++ V+ +T A ++KPF L+ RLL Sbjct: 78 GWSVCRRIRK-TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLES 136 Query: 121 K 121 + Sbjct: 137 R 137 >gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] Length = 257 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ+IL+ +DD +R L + L GY V + ++G+ ++ E FSL++ D+++P D Sbjct: 21 MNQRILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNED 80 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI + R + D+ ++ +T + A L KPF+ ++L+ + +L Sbjct: 81 GISICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 140 Query: 121 K 121 + Sbjct: 141 Q 141 >gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 277 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + + L +AGY V +G +A D+ L++ D+++P MDG+E Sbjct: 21 RILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLMLPGMDGLE 80 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E P + V+ +T ++KPF R+LV V +L Sbjct: 81 VCRRLRENGP-VPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRR 136 >gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 58/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD+ + L + L GY+V++ +NGA + E +++ D++MP++D Sbjct: 1 MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E RR E V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRR 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ ED++++ R L L GYE + G + RE+ + L+L DI++PEM Sbjct: 1 MTHRILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI++ +R + V+ +T + V ++KPF + +L+ + L Sbjct: 61 GIDVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118 >gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M+Q KIL+ +D++ +RR L L + Y+V NG A E + L++ D++MP Sbjct: 1 MSQDAKILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DGIE+ + ++ +T A + KPF R++V V LL Sbjct: 61 IDGIEVCEEIRK-HKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALL 119 Query: 119 TIKN 122 + Sbjct: 120 RRSS 123 >gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ ED++++ R L L GYE V + GA + RE+ + L+L DI++PEM Sbjct: 1 MSNRILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI++ +R + V+ +T + V ++KPF + +L+ + L Sbjct: 61 GIDVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALR 119 >gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ ED++++ R L L GYE V + GA + REE + L+L DI++PEM Sbjct: 1 MSNRILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GI++ +R + V+ +T + V ++KPF + +L+ + L Sbjct: 61 GIDVLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALR 119 >gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 243 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +RR L L GY+VV+ +G A + R++ L++ D++MP++DG Sbjct: 6 KERILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVMMPKLDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 66 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 >gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 59/121 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD+ + L + L GYEV++ NGA +K+ L++ D++MP++D Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ +R + L GY+V+ NG A E L++ DI+MPE+D Sbjct: 1 MQKTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + RR + ++ V+ +T A ++KPF L+ RLL Sbjct: 61 GWSVCRRIRK-TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLES 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta] gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta] Length = 254 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +K+L+ +D+ +R+ L L GY VV+ ++G A + +E +++ DI+MP++DG Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + + D D+ ++ +T VA + KPF ++L + +L Sbjct: 74 YGVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT 132 Query: 122 N 122 N Sbjct: 133 N 133 >gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+D +RRF++ L + GYEV+ +G A K E L++ D+++P MDG E Sbjct: 8 RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R E PD+ V+ +T + KPF+ +L + +L Sbjct: 68 VCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRR 124 >gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] Length = 240 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP MDG E Sbjct: 12 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + V+F+T A ++KPF L +++ + +L Sbjct: 72 VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRR 128 >gi|297569164|ref|YP_003690508.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296925079|gb|ADH85889.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 505 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 67/121 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ +MR L +AL + GYEV NG A + V E L++TDI MPEMD Sbjct: 4 MGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI + ++ + P L V+ ITG+A V ++ + KPF + + + +++ Sbjct: 64 GIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMRQ 123 Query: 121 K 121 + Sbjct: 124 Q 124 >gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1383 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +ILLA+D+ DMR ++ + L + YEV + +G +A + +R P L+L+D++MP ++G Sbjct: 629 NGRILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHPPDLVLSDVMMPRLNG 687 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL + L +L ++ ++ A + L KPF R+L+ + L Sbjct: 688 FELLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFSARELLARIEATLK 747 Query: 120 I 120 + Sbjct: 748 M 748 >gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 61/117 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L ++L GY V +GA A +K+ ++ L + D++MP++DG++ Sbjct: 2 KILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKLDGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR DL VM +T +V+ L KPF L +L+ V LL Sbjct: 62 VCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRR 118 >gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+A+DD ++ L L K GYEV NG A DK L++ D++MPE+D Sbjct: 1 MS-KILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEID 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ + + ++ +T ++KPF+ R++V + +L Sbjct: 60 GLEVCRQIR-MHSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRR 118 >gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51] gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D++ +R + L + GYEV NG A +K +++ ++LL+ D++MPE+D Sbjct: 1 MNA-ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEID 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ R E D+ ++ +T L KPF ++LV V LL Sbjct: 60 GWKVCRDVRE-RSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRR 118 >gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931] gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931] Length = 234 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP MDG E Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + V+F+T A ++KPF L +++ + +L Sbjct: 66 VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRR 122 >gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 241 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ +D++ + L L ++G+EV ++G ++EPF LL+ D+++P++D Sbjct: 1 MAQRILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ ++ + ++ +T ++KPF R++V V +L Sbjct: 61 GLDICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRR 120 >gi|269139358|ref|YP_003296059.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda EIB202] gi|267985019|gb|ACY84848.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda EIB202] gi|304559263|gb|ADM41927.1| Acetoacetate metabolism regulatory protein AtoC [Edwardsiella tarda FL6-60] Length = 461 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L AL G+E + ++GA A + + P ++L DI MP M+GI+ Sbjct: 6 RILIVDDEDNVRRMLTTALTLQGHETHAASHGAEALQRFADAPPDVVLMDIRMPTMNGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P V+ +T +A V ++ + KPF L +L + R L ++ Sbjct: 66 ALKVMRARQPRTPVILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123 >gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 246 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +RR L L GY+VV+ ++G A + ++ L++ D++MP++DG Sbjct: 6 KERILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVMMPKLDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 66 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 >gi|15966580|ref|NP_386933.1| putative 2-component receiver domain protein [Sinorhizobium meliloti 1021] gi|150397917|ref|YP_001328384.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|307300385|ref|ZP_07580165.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] gi|307318250|ref|ZP_07597685.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|15075852|emb|CAC47406.1| Single domain response regulator [Sinorhizobium meliloti 1021] gi|150029432|gb|ABR61549.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|306895932|gb|EFN26683.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|306904551|gb|EFN35135.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] Length = 120 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 103/119 (86%), Positives = 113/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAEDD+DMRRFL+KAL KAGY+V+S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MTAKILLAEDDNDMRRFLVKALEKAGYKVLSYDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEVN++L Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVNKMLA 119 >gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D++ +R + L + GYEV NG A +K +++ ++LL+ D++MPE+D Sbjct: 1 MNA-ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEID 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ R E D+ ++ +T L KPF ++LV V LL Sbjct: 60 GWKVCRDVRE-RSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRR 118 >gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 232 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 MN+K IL+ ED++ +RRF+ L AGY V +G A DK++ +++ DI++P Sbjct: 1 MNRKKIKILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 +DG E+ + P+ +V+ +T + KPF+ +L + + Sbjct: 61 GIDGFEVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAV 120 Query: 118 LTIKN 122 L +N Sbjct: 121 LRRRN 125 >gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 242 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + +G +A R+ L++ D+++P+MDG Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGFT 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E + V+F+T A ++KPF L ++V + +L Sbjct: 71 VTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127 >gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 243 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ +DD + + + L AGY+V +G SA V EP L++ D+++P +D Sbjct: 1 MTQRVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + ++ +T A LSKPF R+LV V +L Sbjct: 61 GLEVCRRLRTKPGGVPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRR 120 >gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 242 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L +AGY+VV+ +G A +K E L++ D+++P+MD Sbjct: 1 MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRR 120 >gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 242 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] Length = 299 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 51/117 (43%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + + L AGY +G++A + F L++ D++MP MDG+ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + V+ +T + KPF R+LV V +L Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 >gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 229 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL +DD + + L +LGK G+EV++ ++G A K R+ L++ D++MP MD Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E ++ ++ ++ ++ +KPF +L V +L Sbjct: 61 GFETYQKLKAQR-EVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR 119 >gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 242 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 244 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GYEV + +G A D+ L++ DI MP MDG+ Sbjct: 9 QRILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR V+ +T V L KPF L +L V LL + Sbjct: 69 TAARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 128 >gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 238 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++ +IL+ +D++ +RR L L K GYE+ +G +A K E + L++ D+++P Sbjct: 1 MSEHGNRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDG+E+ R ++ ++ +T + KPF R+++ V + Sbjct: 61 GMDGVEVCTRLRQVKS-TPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAI 119 Query: 118 LTIKN 122 L + Sbjct: 120 LRRSS 124 >gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032] gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032] Length = 242 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L +AGY+VV+ +G A +K E L++ D+++P+MD Sbjct: 1 MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRR 120 >gi|157144822|ref|YP_001452141.1| acetoacetate metabolism regulatory protein AtoC [Citrobacter koseri ATCC BAA-895] gi|157082027|gb|ABV11705.1| hypothetical protein CKO_00549 [Citrobacter koseri ATCC BAA-895] Length = 461 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E +NG +A + P ++L DI MPEM+GIE Sbjct: 6 RILIVDDEDNVRRMLATAFSLQGHETQCASNGQTALQHFADAPPDVVLMDIRMPEMNGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P + ++ +T +A V ++ + KPF L +L + R L ++ Sbjct: 66 ALKVMRAQHPRVPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123 >gi|189424441|ref|YP_001951618.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189420700|gb|ACD95098.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 462 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 62/121 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D++ +R L L GY+V+ NGA A D +REE L+L DI MP MD Sbjct: 1 MSKLILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI+ + L PDL V+ ++G + + + KPF L ++ + L Sbjct: 61 GIQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNF 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 331 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + + L +GY +G +A ++ F L++ D++MP MDG+ Sbjct: 106 KILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPFMDGMT 165 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + V+ +T + KPF R+LV V +L Sbjct: 166 CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNR 222 >gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 232 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+Q KIL+ +D++ +R L L K GY++ NG A + +E+ +L+L D+++P+M Sbjct: 1 MSQDKILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQM 60 Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG ++ + + + ++ IT ++KPF +R+L+ + + Sbjct: 61 DGYDVCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAV 120 Query: 118 LTI 120 L Sbjct: 121 LRR 123 >gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMDG E Sbjct: 3 RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R + D D+ ++ +T L KPF +LV V LL Sbjct: 63 LCRELRDYD-DVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKR 118 >gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 247 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L ++L GYEV S +GA A D V + +++ D++MP +DG+E Sbjct: 2 RVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRDRPDIVVLDVMMPRVDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 RR DL V+ +T +A L KPF L +L + L Sbjct: 62 ACRRLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRAL 115 >gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 242 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 59/121 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD+ + L + L GYEV++ NGA +K+ +++ D++MP++D Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 236 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ EDD ++ + L K G++V+ +GA A + ++ E L++ D+++P +DG E Sbjct: 9 TVLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLMLPGIDGWE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ + L V+ +T + + KPF ++L+ V +L Sbjct: 69 VCRQIRS-NSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRR 124 >gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 239 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D+ + L L ++GY+V++ ++G A ++ +E L++ D+++P++D Sbjct: 1 MNKKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVMLPKVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++ ++ + + ++ +T ++KPF R++ V +L Sbjct: 61 GIDVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRR 120 >gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 238 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++ +IL+ +D++ +RR L L K GYE+ +G +A K E + L++ D+++P Sbjct: 1 MSEHGNRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDG+E+ R ++ ++ +T + KPF R+++ V + Sbjct: 61 GMDGVEVCTRLRQVKS-TPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAI 119 Query: 118 LTIKN 122 L + Sbjct: 120 LRRSS 124 >gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] Length = 239 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q++L+ +D++ + L L ++GYEVV+ +GAS + + F L++ D+++PEMD Sbjct: 1 MTQRLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ ++ + ++ +T ++KPF R++V V +L Sbjct: 61 GLDVCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRR 120 >gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa] gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa] Length = 239 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GYEVV+ +G A + E +L++ D++MP++DG Sbjct: 5 KKKILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + LL Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122 >gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 245 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R L++ D++MP++DG Sbjct: 8 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVMMPKLDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 68 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 125 >gi|294636746|ref|ZP_06715086.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685] gi|291090047|gb|EFE22608.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685] Length = 263 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L AL G+E ++ ++GA A + + P ++L DI MP M+GI+ Sbjct: 6 RILIVDDEDNVRRMLTTALTLQGHETLTASHGAEALQRFTDTPPDVVLMDIRMPTMNGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P V+ +T +A V ++ + KPF L +L + R L ++ Sbjct: 66 ALKIMRTRRPRTPVILMTAYAEVETAIEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123 >gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 231 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD +R L ++L GY V +G A D + + ++ D++MP +D Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 247 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A D R L++ D++MP++DG Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDPDLVVLDVMMPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 69 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|91204350|emb|CAJ72003.1| strongly similar to sigma 54 response regulator [Candidatus Kuenenia stuttgartiensis] Length = 455 Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +D+ MR L L K GY+V S +N +R E F +++TD+ +P M+ Sbjct: 1 MSNKILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+EL + +PD+ V+ +T + + + ++KPF +L+ ++ R L Sbjct: 61 GMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQH 120 Query: 121 KN 122 KN Sbjct: 121 KN 122 >gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 327 Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +DD + + L +AG V +G SA + L++ D+++P MDG+E Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E P + V+ +T ++KPF R+LV V +L Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133 >gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMDG E Sbjct: 5 RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R + D D+ ++ +T L KPF +LV V LL Sbjct: 65 LCRELRDYD-DVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKR 120 >gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GYEVV+ +G A + R L++ D++MP++DG Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 69 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 255 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MDG Sbjct: 23 SMKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDG 82 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ R D ++ +T V+ L+KPF L +L+ V L+ Sbjct: 83 LEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 141 >gi|297569043|ref|YP_003690387.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924958|gb|ADH85768.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 461 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 55/117 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ + L + L GYE + + + R L++TD+ MP MDG+ Sbjct: 2 KTILVVDDEPNYLVILSELLRDEGYETFTAGSAEEGLEIARHTDLDLIITDMRMPGMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL + ++P L V+ IT F V + L+KPF +L+ + + L Sbjct: 62 ELLKTIKGINPSLPVIMITAFGEVDKAVAAMRAGAFNYLTKPFDNDELLVSIRKALE 118 >gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] Length = 237 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ ED+ ++ L L + GY+ + +G + E+ L+L D+++P MD Sbjct: 1 MGKTVLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G E+ RR E + ++ +T A ++KPF +R+L+ V Sbjct: 61 GFEVCRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKA 116 >gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 4/125 (3%) Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++ +IL+ +D++ MR L+ L K GYE V+ +NG A ++++EE F L+L D++MP Sbjct: 1 MSESMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E+DG+ R E ++ ++ +T + ++KPF R+L+ + Sbjct: 61 ELDGLTACMRIREF-SNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEAT 119 Query: 118 LTIKN 122 L + Sbjct: 120 LRRTH 124 >gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium angustum S14] Length = 1114 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L L AGY V + +G A D V+++ L+L DI+MPEM G E+ Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQALDIVQQQRPDLILLDIMMPEMSGYEV 766 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +L +M ++ + L+KPF+ +L+ + L Sbjct: 767 CTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQ 823 >gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus] gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 237 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++++R + L + YEV + NG ++ L++ D++MP+ + Sbjct: 1 MKKRILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQKN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 G EL + ++ ++ +T L+KPF +LV + Sbjct: 61 GWELCEEIRQ-KSNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQ 114 >gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13] Length = 227 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +MR L L K Y+V+ NG A D + + L++ D++MP+MDG Sbjct: 7 VLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPDMDGFTA 66 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ E + ++ +T + + KPF ++L+ V LL N Sbjct: 67 CKKIREKYM-MPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRSN 123 >gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 242 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A D R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 243 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFHNTTPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 233 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + KIL+ +D++ + + L K GYEV++ +G A +E F L++ D+++P+ Sbjct: 1 MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G E+ + E ++ ++ +T + + L+KPF +R+LV V L+ Sbjct: 61 ISGEEVCSKIREF-SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KI++ +DD ++R ++ L ++G+ +G A K+ + L++ D++MP MD Sbjct: 3 MS-KIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVMMPNMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL R +L V+ +T +A L+KPF +L+ V LL Sbjct: 62 GFELCRHLRRYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRR 121 >gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 243 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A D E L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 242 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 242 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|39996422|ref|NP_952373.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983302|gb|AAR34696.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 460 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +RR L L + GY+V++ +G E +L++TD+ MP M G Sbjct: 9 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPALVVTDLKMPGMGGFR 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + PD V+ IT F AV D+ ++KPF+ L V + L + Sbjct: 69 LLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLTVKKALEM 125 >gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +LV + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 243 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A D E L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 228 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 QKIL+ +D+ D + L L GY+V ++G A P L+++D++MP MDG Sbjct: 2 QKILVVDDELDCQAVLAIYLESRGYQVECASSGLEALSIFESNPPDLVISDVMMPHMDGF 61 Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E RR L + +F++G + + ++ L KPF ++++ +V L Sbjct: 62 EFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGGDDYLVKPFQPKEILAKVKGQLER 121 Query: 121 KN 122 + Sbjct: 122 SH 123 >gi|163758886|ref|ZP_02165973.1| putative two component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162284176|gb|EDQ34460.1| putative two component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 121 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 100/118 (84%), Positives = 112/118 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAEDD+DMRRFL+KAL KAGYEV S +NGASAYD++REEPF+LLLTDIVMPEMD Sbjct: 1 MTPKILLAEDDNDMRRFLVKALEKAGYEVRSFDNGASAYDRLREEPFNLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIELARRATELDPDLKVMFITGFAAVALNPDS AP++AKVLSKPFHLRDLV+EVN+++ Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPRDAKVLSKPFHLRDLVDEVNKMI 118 >gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] Length = 234 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QKIL+A+D+ +R L K G+EV+ +GA+A KV+ E +LL DI+MP +DG Sbjct: 5 KQKILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIMMPVLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 IE+ ++ ++ DL ++ +T ++KPF+ R++V V +L Sbjct: 65 IEVCKQVRKM-SDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRR 122 >gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806] Length = 246 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GYEVV+ +G A + R L++ D++MP++DG Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 69 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD +R L ++L GY V +G A D + ++ D++MP +D Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 254 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 54/116 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +R L +L GY V + +G +A +V L+L D++MP MDG+ Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR DP L V+ +T L+KPF L +L+ V LL Sbjct: 76 CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRR 131 >gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] Length = 271 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 51/117 (43%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + + L AG+ +GA+A + + L++ DI+MP MDG+ Sbjct: 47 KILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPFMDGMT 106 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R V+ +T + + KPF R+LV V +L Sbjct: 107 CLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLAR 163 >gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 243 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +RR L L GYEVV+ +G A E L++ D++MP++DG Sbjct: 5 KERILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA [Mycobacterium marinum M] gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +D Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QKIL+ ED+ + R L L + GYE +GA Y + L++ DI++P M+ Sbjct: 1 MSQKILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIMLPGMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + + V+ +T A ++KPF + +L++ V+ +L Sbjct: 61 GFEVLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRR 120 >gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 236 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED++++R + L + YEV + NG +D L++ D++MP+ DG Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL + ++ ++ +T L+KPF R+LV V +L N Sbjct: 62 ELCGEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 >gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 225 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V++ ++G A V E L + D++MP MDG Sbjct: 2 KRILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 238 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+D +RR L L + YEV NG A E + L+L DI+MP MDGIE Sbjct: 6 KILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPGMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + VM +T A + KPF R++V V LL + Sbjct: 66 VCQELRK-TKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 123 >gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 235 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +D+ + + L K GYEVV+ +G +KV + L++ D+++P++D Sbjct: 1 MANKVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A+R + ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVAKRVRAKH-NTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 Query: 121 KN 122 ++ Sbjct: 120 QD 121 >gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 224 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +DD +R + L K G+ V +G A K+ L + D++MP MD Sbjct: 1 MN-KILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKADLAIIDLMMPNMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + D+ V+ +T A L KPF +L+ V LL Sbjct: 60 GFELCQELRASY-DIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKR 118 >gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D++ + L L ++GYEVV+ ++G A + E L++ D+++P++D Sbjct: 1 MSKKILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120 >gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 227 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD + + L GYEVVSC +G++A + +E L+L D+++P MD Sbjct: 1 MSSRILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ R + D ++ +T + + + KPF ++LV V L Sbjct: 61 GFDVCRAIRRV-SDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|258591620|emb|CBE67921.1| putative Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG) [NC10 bacterium 'Dutch sediment'] Length = 487 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D++ +R L KAL + GY+VV +G + + L+L DI MP +G Sbjct: 4 TRHILVVDDEESIRWALRKALEREGYQVVLAADGVEGLARATDPSIDLVLMDIKMPGAEG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E R E P+L V+ +T F + + ++KPF +L V R+ I+ Sbjct: 64 LETLSRIKETRPELPVIIMTAFGTLQAAVQAMKRGAYDYITKPFDFGELTILVQRVFEIR 123 >gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN+ +L+A+D+ +R L K G++V+ +GA A +V+ ++L DI+MP Sbjct: 1 MNKQQTVLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIMMPV 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DG+E+ ++ ++ D+ ++ +T + +SKPF+ R++V V +L Sbjct: 61 LDGLEVCKQVRKI-SDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVL 119 Query: 119 TIKN 122 N Sbjct: 120 RRTN 123 >gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC 7002] gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC 7002] Length = 242 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +RR L L GYEVV+ +G A E L++ D++MP++DG Sbjct: 5 KERILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 242 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI LAEDD + + L + GYE+ S +G A + F L++ DI+MP ++GIE Sbjct: 3 KIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R+ +L ++ +T + V L+KPFH ++L+ + LL Sbjct: 63 LCRQLRSSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLRR 119 >gi|227823401|ref|YP_002827374.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227342403|gb|ACP26621.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] Length = 120 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 103/119 (86%), Positives = 113/119 (94%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILLAEDD+DMRRFL+KAL KAGY+V+S +NGASAYD++REEPFSLLLTDIVMPEMD Sbjct: 1 MTVKILLAEDDNDMRRFLVKALEKAGYKVLSYDNGASAYDRLREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIELARRATELDPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEVN++L Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVNKMLA 119 >gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 243 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A D E L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 231 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD +R L ++L GY V +G A D + + ++ D++MP +D Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ K+LL +D+ DMR+ + L GYE NG A K+ E + ++ DI+MPEM Sbjct: 1 MNKYKVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGI + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGIAVCKEIRK-TSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|298505432|gb|ADI84155.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 461 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +RR L L + GY+V++ +G E +L++TD+ MP M G Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPALVVTDLKMPGMGGFR 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + PD V+ IT F AV D+ ++KPF+ L V + L + Sbjct: 70 LLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLTVKKALEM 126 >gi|308274678|emb|CBX31277.1| hypothetical protein N47_E47890 [uncultured Desulfobacterium sp.] Length = 1155 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+A+D+ MR L + L + + V +G+ A D ++ +P+ L+L DI+MP MDG+E Sbjct: 191 HILVADDELVMRDSLKEWLTEERFSVDMAASGSEALDMLKAKPYDLMLLDIMMPGMDGVE 250 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + ++A E DL V+ +T +A V ++ L KPF+ L + R+ Sbjct: 251 VLQKAKENFADLNVIMMTAYATVETAVEAMKKGAMDYLVKPFNPDALTPMILRI 304 >gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 227 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +D+ +R+ L L K + + ++G A KV E L++ D+++PE+ Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ ++ + D ++ +T + A L KPF LR+L+ + +L Sbjct: 61 GEEVCQKIRQ-DKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRR 119 Query: 121 KN 122 N Sbjct: 120 SN 121 >gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4] gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5] gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus 273-4] gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 254 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + Q+IL+ +DD +R L + L G+ V + ++G+ ++ E FSL++ D+++P D Sbjct: 10 LTQRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLPGED 69 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI + +R E + D+ ++ +T A L KPF+ ++L+ + +L Sbjct: 70 GISICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 129 Query: 121 KN 122 +N Sbjct: 130 QN 131 >gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ILL +D+ + + + L K GY+V + NG A D R + L++TDI+MP+MD Sbjct: 1 MTH-ILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + +L D +FIT S L+KPF R+L V LL Sbjct: 60 GYDFIDAVLQLREDQPFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKNLLRR 119 >gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185] gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W] gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185] Length = 342 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD Sbjct: 115 MESKILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 174 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 175 GIEACMKIRE-DRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 233 >gi|322421165|ref|YP_004200388.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320127552|gb|ADW15112.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 468 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ +R L + L Y V + NG +A + ++++ F L++TD+ MP M+ Sbjct: 1 MN--ILVVDDESVIREGLSRILEGDTYTVDAAKNGHAAIELLQQKQFDLIITDLKMPGMN 58 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ L PD V+ ITGFA V ++ + KPF ++ +V L Sbjct: 59 GFEVLNAVKILQPDTPVIMITGFATVETAVEAMKNGTVDYIVKPFTPEQILEKVQLALEQ 118 Query: 121 K 121 K Sbjct: 119 K 119 >gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +DDD +R + L G+ V NG A +K+ EE L + DI+MP+MD Sbjct: 1 MN-KILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIMMPQMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E ++A D+ ++ +T + ++ L+KPF + +L+ + LL Sbjct: 60 GYEFCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRR 119 >gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 243 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A + + L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +LV + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ ED+ +R+ ++ L ++ +EV+ +G +A ++ SL++ D+++P+MDG E Sbjct: 5 KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R E PDL ++ ++ + KPF+ +L + +L Sbjct: 65 ICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRR 121 >gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241] gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+ +D+ + + L K GYEVV +G A KV E L++ D+++P++D Sbjct: 11 MDKKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKID 70 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A++ ++ +T + ++KPF R+LV V L Sbjct: 71 GLEVAKQVRAKRS-TPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 129 Query: 121 KN 122 ++ Sbjct: 130 QD 131 >gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 243 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A D + L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKADPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D + + L K G+ V ++G A + + F L++ DI+MPE+ G + Sbjct: 5 RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E + V+F+T A ++KPF LR+L + +L Sbjct: 65 VLRRIRE-KIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRR 120 >gi|148265667|ref|YP_001232373.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399167|gb|ABQ27800.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 471 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 66/119 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R + + L G+ V + NG A +K++ E F LL+TD+ MP M G+ Sbjct: 4 KRILVVDDEAVIREGMRRILDGGGFTVETFANGYLAIEKLQAEAFDLLITDLKMPGMGGM 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ + L P++ V+ ITG+++V + ++KPF +++ +V L K Sbjct: 64 EVLKSIKVLQPEMPVIIITGYSSVDTAVEVMKNGAVDYIAKPFTPEEIIEKVENALEQK 122 >gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q+IL+ +D++ + L L +AG+E V+ +G +AYD ++ F L++ D+++PEMD Sbjct: 1 MTQRILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + +L ++ +T L+KPF R++V V +L Sbjct: 61 GLEVCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRR 120 >gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 248 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ +MR L L + G+EV NG A + F ++L D+++P+MDG ++ Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ E D + ++ +T + L+KPF +L+ V L+ Sbjct: 76 CKKIREKD-HVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRR 130 >gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P+ D Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-DMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRR 119 >gi|203284656|ref|YP_002222396.1| response regulatory protein [Borrelia duttonii Ly] gi|201084099|gb|ACH93690.1| response regulatory protein [Borrelia duttonii Ly] Length = 451 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+A+D+ ++R + L + GY V + ++G A + ++ E +++D+ MP++ Sbjct: 1 MS-KLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEKIDAIISDLRMPQIS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + + +P++ + +T V D+ L+KP L L+ + R L Sbjct: 60 GEELLKIVKDRNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALKK 119 Query: 121 KN 122 +N Sbjct: 120 RN 121 >gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 283 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ EDD + + + L +G++V + +G A E L++ D ++P +DG+ Sbjct: 31 RRILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGL 90 Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ RR P+ + V+ +T + L+KPF R+LV V +L Sbjct: 91 EVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 150 >gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA3] gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA2] gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL097PA1] gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL099PA1] gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E R D+ ++ +T AV D + KPF L +L+ + L Sbjct: 61 GLEATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRAL 117 >gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M QK+L+ ED+ ++ L L K GYE +G + R L+L DI++P MD Sbjct: 1 MAQKVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + ++ E D V+ +T + KPF +++++ ++ +L Sbjct: 61 GWSVLKKIRESDK-TPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRR 119 >gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA [Mycobacterium ulcerans Agy99] gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans Agy99] Length = 232 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +D Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 238 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAED++ +R F+ + L G+EV+ +NG A ++E LL+ D++MP MDG+ Sbjct: 6 KRILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVMMPRMDGL 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ +R + + ++ +T + + L+KPF + +L+ V L N Sbjct: 66 EVCQRVRQ-SSTVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRRTN 124 >gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 251 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + Y + NG A K E + L+L D++MP DGIE Sbjct: 19 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 78 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ E ++ +T A + KPF R++V V LL Sbjct: 79 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 134 >gi|319940657|ref|ZP_08015000.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis 3_1_45B] gi|319806023|gb|EFW02781.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis 3_1_45B] Length = 241 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++ILL +D+ ++ + + L GYE S +G A DK+ L++ D++MP MD Sbjct: 1 MNKRILLVDDERNLNQLIATNLKFEGYETESAYSGIEAIDKLGRFSPDLVVLDVMMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + V+ +T V L KPF + +L + +L Sbjct: 61 GFEVLEHLRHA-SSIPVILLTAKNRVDDRIRGLTLGADDYLGKPFAIDELTARIEAVLRR 119 >gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] Length = 226 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 57/114 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+AEDD +R L+ GY++ NG A D E + DI+MPE++G + Sbjct: 2 KVLIAEDDILIREGLVDIFEDEGYQIAEAANGREALDLYHNEKPDFICLDIMMPEINGYD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R ++D D+ V+F++ + ++KPF +++++ V + Sbjct: 62 VCREIRKVDSDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAV 115 >gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 1132 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ + L L AGY V + +G A D V+++ L+L DI+MPEM G E+ Sbjct: 721 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQAIDIVQQQRPDLILLDIMMPEMSGYEV 780 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + +L +M ++ + L+KPF+ +L+ + L Sbjct: 781 CTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQ 837 >gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 225 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD + + + L GYEV N G + V E+ L++ DI+MP++D Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ +R + D + ++ +TG ++A L KPF +LV V LL Sbjct: 61 GLEVCKRLRK-DAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRR 119 >gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum] gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L+KPF L +L+ V L+ Sbjct: 62 VCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 118 >gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] Length = 342 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD Sbjct: 115 MESKILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 174 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 175 GIEACMKIRE-DRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 233 >gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q I++ +DD+ + L ++L GYEV + +NG + +L+ D++MP++D Sbjct: 1 MRQHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + ++ +T ++ L KPF L +L+ V LL Sbjct: 61 GWEVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRR 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 290 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + + + L AG++V +G +A L++ D+++P +DGIE Sbjct: 54 RVLVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLMLPGIDGIE 113 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E P + V+ +T A ++KPF R+L V +L Sbjct: 114 VCRRLREQRP-VPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRR 169 >gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 241 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 62/117 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +D+ ++R L +L AG++VV+ ++G A + + E L++ D+++P+MDG Sbjct: 13 RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFT 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E V+F+T VA ++KPF L ++V + +L Sbjct: 73 VTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRR 129 >gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264] gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +LV + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 61/117 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+A+D+ +R L ++L GYEVV +GA A + + +E +L++ D++MP+MDG+E Sbjct: 2 KILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L KPF L +L+ V L Sbjct: 62 VCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRR 118 >gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1] Length = 232 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 54/117 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDDD +R + + LG AGY V+ +G + E ++ D+++P MDG++ Sbjct: 6 RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLPGMDGLQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R P L ++ +T + KPF R+LV + +L Sbjct: 66 VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRR 122 >gi|188584894|ref|YP_001916439.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349581|gb|ACB83851.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 239 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+K+L+ +D+ ++R L L GYE+ NG A +K+R + + L+L D+ +P ++ Sbjct: 1 MNKKLLIVDDEKNIRMTLKNCLSYEGYELEIALNGEEALEKLRTQDYDLVLLDLKLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ + + D+KV+ +T + V ++ ++KPF + VN +L+ Sbjct: 61 GLQVLEKVRDEGRDVKVIMMTAYGTVERAVNAMKLGAIDFINKPFSPNQIRALVNDVLSR 120 Query: 121 KN 122 N Sbjct: 121 PN 122 >gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1] gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 233 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ + + L +AG++V+S +G +A R+E +L++ D+++P MD Sbjct: 1 MSRTILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMD 60 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+++ R + L L ++ +T ++KPF R+LV V +L Sbjct: 61 GLDVTRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|89094868|ref|ZP_01167800.1| two-component response regulator [Oceanospirillum sp. MED92] gi|89080825|gb|EAR60065.1| two-component response regulator [Oceanospirillum sp. MED92] Length = 454 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 59/116 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ EDD+++R L L AG++ + + A + E +++TD+ MP MD Sbjct: 1 MSNRILIVEDDNELREALCDTLELAGFDYIEAEDAEKALALLTEHQVDMVVTDVNMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 G EL + + P L VM IT F V+ ++ L KPF L++ V R Sbjct: 61 GHELLSQIRQSYPGLPVMLITAFGQVSKAVEAIKAGAVDYLMKPFDSDALISSVRR 116 >gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 237 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +DD +R L +AL GY+V ++GA A + + P L+++D++MPEMDGI Sbjct: 2 KKILVVDDDRTLRITLTRALENMGYQVQQVSSGAEALEACVKNPPDLVVSDVMMPEMDGI 61 Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E RR + +F++G + ++ L KP + R+L ++ L Sbjct: 62 EFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNPRELAAKIEAQLER 121 >gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +LV + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 236 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P+ D Sbjct: 2 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 62 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRR 120 >gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 252 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+ ++R L +L AG++VVS NGA A + LL+ D+++P+MDG Sbjct: 13 TLLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGFT 72 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + RR + + V+F+T + ++KPF L ++V + +L + Sbjct: 73 VTRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 131 >gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A D R L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|148265760|ref|YP_001232466.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399260|gb|ABQ27893.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 454 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GYEVV+ +G + E +L++TD+ MP + Sbjct: 1 MAAKILIIDDDTSLRRVLEYNLQEEGYEVVTAADGEAGLALFAECSPALVVTDLKMPGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ E P V+ IT F A+ ++ ++KPF+ L V + L + Sbjct: 61 GFQVLATIKERSPATLVIVITAFGAIDTAIEAMKLGAYDYITKPFNRDQLKLVVKKALEL 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD +R L ++L GY V +G A D + L+ D++MP +D Sbjct: 1 MAVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+AED+ +R F+I L +AG++V NG A EPF ++L D++MPEMD Sbjct: 1 MN-RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E +LD ++ ++ +T + ++KPF +LV + LL Sbjct: 60 GFEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRR 119 >gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 236 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEV++ NG A + +E L++ D +MPEM Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ R + + ++ +T + KPF LR+L + +L Sbjct: 61 GIEVLREIRK-KSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR 119 >gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 237 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P D Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis] Length = 241 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120 >gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 244 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+ IL+ +D++ M RF+ L G++V+S G A +KVR E L+L D+++P++DG Sbjct: 7 NRSILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVMLPDLDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + E + V+ +T ++KPF R+LV+ V +L Sbjct: 67 FEVLKLIRE-SSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRR 124 >gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 242 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GYEVV+ +G A + R+ L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120 >gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ +R L AGY V+ G EE L++ D+++P MD Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R E D+ ++ +T + L+KPF R+LV V +L Sbjct: 61 GMEITARLRE-RSDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119 Query: 121 K 121 + Sbjct: 120 Q 120 >gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E R D+ ++ +T AV D + KPF L +L+ + L Sbjct: 61 GLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRAL 117 >gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205] Length = 249 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +RR L L GY+VV+ +G A + R L++ D++MP++DG Sbjct: 9 KETILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNPDLVVLDVMMPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 69 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 126 >gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 276 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +DD + + L +AG V +G SA + L++ D+++P MDG+E Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E P + V+ +T ++KPF R+LV V +L Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133 >gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 237 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P D Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ +R L+ AL K GY V + +G +A + L++ D+++PE+D Sbjct: 1 MSKHILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPELD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR ++F++ A L+KPF R+LV V LL Sbjct: 61 GLEVCRRLRA-GSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLRR 119 >gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + Y + NG A K E + L+L D++MP DGIE Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ E ++ +T A + KPF R++V V LL Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 >gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E R D+ ++ +T AV D + KPF L +L+ + L Sbjct: 61 GLEATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRAL 117 >gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + Y + NG A K E + L+L D++MP DGIE Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ E ++ +T A + KPF R++V V LL Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 >gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis] Length = 240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120 >gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis] gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120 >gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120 >gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 237 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GY+VV+ +G A KV E L+L D+++P++D Sbjct: 1 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+AR+ + D ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 >gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis AF2122/97] gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T92] gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T17] gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis CPHL_A] gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis T46] gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG] gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +D Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] Length = 235 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEVV +G A +KV E L++ D+++P++D Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLMLPKVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A+R ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 Query: 121 K 121 + Sbjct: 120 E 120 >gi|323701988|ref|ZP_08113657.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323533074|gb|EGB22944.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 448 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++L+ +D++ M L +AL GY+V++ G +E S+++ D+ MP++D Sbjct: 1 MIPRVLVIDDEERMCWALERALSHEGYQVITTTRGVQGVSLAQEMDPSIVVLDLKMPDLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ R+ + +P++ V+ IT + ++ ++KPF L +L + + L + Sbjct: 61 GIEVLRKIKDFNPNIPVIMITAHGTIETAIEAMKIGATDYITKPFKLEELKVVIKQALHV 120 >gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ ED+D +R F + L +AGYEVV G A P F + + D++MP MD Sbjct: 2 KRILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G E+ RR E + + ++ +T + + ++KPF +LV V+ L Sbjct: 62 GFEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDAL 118 >gi|301057951|ref|ZP_07199008.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] gi|300447918|gb|EFK11626.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] Length = 453 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 57/119 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ + + L L G+EV + +G A KV E L+L DI M MD Sbjct: 1 MSKTILVVDDETSILQSLEGILSDEGFEVATAESGLEALKKVEETMPDLVLLDIWMSGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIE + +L P L+V+ ++G + + + KP L L+ +N L Sbjct: 61 GIETLEKIKDLYPRLQVIMMSGHGNIETAVKATKVGAYDYIEKPLSLEKLLLSINNALA 119 >gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G + NG A D + L++ DI+MPEMDG E Sbjct: 3 RILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDGWE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R + D D+ ++ +T + L KPF +LV V LL Sbjct: 63 LCRELRDYD-DVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKR 118 >gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7] gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +D+ D+R + L K G+EV+ +NG A + E L + D++MP MD Sbjct: 1 MKAKVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL E D+ V+ +T + + KPF +L+ V +L Sbjct: 61 GFELVENLKEFK-DVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKR 119 >gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24] gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24] gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24] Length = 280 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + + L +AGY V +G A + L++ D+++P MDG+E Sbjct: 54 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 113 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P + V+ +T ++KPF R+LV V +L Sbjct: 114 VCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 167 >gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp. subtilis str. 168] gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis] gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis] gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GYEV ++G A + V E L+L DI++P D Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 Query: 121 K 121 + Sbjct: 120 Q 120 >gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E R D+ ++ +T AV D + KPF L +L+ + L Sbjct: 61 GLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRAL 117 >gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++IL+ ED+ ++ L LG+ GYE + +G S E+ L+L D+++P+M+ Sbjct: 1 MNKRILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ R + V+ +T ++KPF +R+L+ V + Sbjct: 61 GFDVCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRR 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|94268821|ref|ZP_01291291.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451451|gb|EAT02291.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 461 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +D+ + L + L + GYEV +G A + +++ L++TD+ MP +DG+ Sbjct: 2 QTILVVDDEPNYLVILEELLREEGYEVFCAESGQQALEIIKQSDLDLVITDMRMPGLDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EL + + E +PDL V+ IT F V + L+KPF +L+ V + Sbjct: 62 ELLKSSKERNPDLPVIMITAFGEVEKAVAAMRTGAFNYLTKPFDNDELLVSVRQA 116 >gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] Length = 241 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEVV +G A +KV E L++ D+++P++D Sbjct: 7 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLPKID 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A+R ++ +T + ++KPF R+LV V L Sbjct: 67 GLEVAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 125 Query: 121 K 121 + Sbjct: 126 Q 126 >gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R] gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R] Length = 255 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MDG Sbjct: 23 SMKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRMDG 82 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ R D ++ +T V+ L+KPF L +L+ V L+ Sbjct: 83 LEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 141 >gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++++L+ +DD ++R L + L +AG++V++ G ++ + L++ DI+MP D Sbjct: 3 MSKQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHSPDLIILDIMMPGED 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G L ++ D + ++ +T + A ++KPF R+L + LL Sbjct: 63 GFTLCQQIRR-DSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLRR 121 >gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M++ KIL+ +D+ +RR + ++L K Y VV +G A K+ E LL+ D++MPE Sbjct: 1 MSKTTKILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLMMPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG E+ + + V+ +T + ++KPF +L V +L Sbjct: 61 MDGFEVCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 235 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ +D+ + + L K GYEVV +G A KV E L++ D+++P++D Sbjct: 1 MAKKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A++ ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVAKQVRAKRS-TPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 Query: 121 KN 122 ++ Sbjct: 120 QD 121 >gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + KIL+ +D++ + + L K GYEV++ +G A +E F L++ D+++P+ Sbjct: 1 MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G E+ + E ++ ++ +T + + L+KPF +R+LV V L+ Sbjct: 61 IFGEEVCSKIREF-SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ +R L ++L GY VV+ +G A + + E +++ D++MP MDG+E Sbjct: 2 KVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L+KPF L +L+ V L+ Sbjct: 62 VCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRR 118 >gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261] gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L PD +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI] gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 239 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L +L AG+EV S +GA A + L++ D+++P++DG Sbjct: 11 RLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDVDGFT 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ E + V+F+T A ++KPF L ++V + +L Sbjct: 71 VTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127 >gi|17988394|ref|NP_541027.1| sensory transduction histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|23499810|ref|NP_699250.1| response regulator [Brucella suis 1330] gi|62317002|ref|YP_222855.1| response regulator [Brucella abortus bv. 1 str. 9-941] gi|83268996|ref|YP_418287.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148558406|ref|YP_001257123.1| response regulator [Brucella ovis ATCC 25840] gi|161620133|ref|YP_001594019.1| hypothetical protein BCAN_B0046 [Brucella canis ATCC 23365] gi|163844241|ref|YP_001621896.1| hypothetical protein BSUIS_B0046 [Brucella suis ATCC 23445] gi|189022273|ref|YP_001932014.1| Response regulator receiver [Brucella abortus S19] gi|225628524|ref|ZP_03786558.1| sensory transduction histidine kinase [Brucella ceti str. Cudo] gi|225685910|ref|YP_002733882.1| hypothetical protein BMEA_B0046 [Brucella melitensis ATCC 23457] gi|237816565|ref|ZP_04595557.1| sensory transduction histidine kinase [Brucella abortus str. 2308 A] gi|254691510|ref|ZP_05154764.1| response regulator receiver protein [Brucella abortus bv. 6 str. 870] gi|254695194|ref|ZP_05157022.1| response regulator receiver protein [Brucella abortus bv. 3 str. Tulya] gi|254698294|ref|ZP_05160122.1| response regulator receiver protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699362|ref|ZP_05161190.1| response regulator receiver protein [Brucella suis bv. 5 str. 513] gi|254702482|ref|ZP_05164310.1| response regulator receiver protein [Brucella suis bv. 3 str. 686] gi|254706395|ref|ZP_05168223.1| response regulator receiver protein [Brucella pinnipedialis M163/99/10] gi|254711316|ref|ZP_05173127.1| response regulator receiver protein [Brucella pinnipedialis B2/94] gi|254711916|ref|ZP_05173727.1| response regulator receiver protein [Brucella ceti M644/93/1] gi|254714986|ref|ZP_05176797.1| response regulator receiver protein [Brucella ceti M13/05/1] gi|254731736|ref|ZP_05190314.1| response regulator receiver protein [Brucella abortus bv. 4 str. 292] gi|256014838|ref|YP_003104847.1| response regulator [Brucella microti CCM 4915] gi|256030055|ref|ZP_05443669.1| response regulator receiver protein [Brucella pinnipedialis M292/94/1] gi|256042972|ref|ZP_05445918.1| response regulator receiver protein [Brucella melitensis bv. 1 str. Rev.1] gi|256059706|ref|ZP_05449901.1| response regulator receiver protein [Brucella neotomae 5K33] gi|256112054|ref|ZP_05452990.1| response regulator receiver protein [Brucella melitensis bv. 3 str. Ether] gi|256158227|ref|ZP_05456136.1| response regulator receiver protein [Brucella ceti M490/95/1] gi|256252832|ref|ZP_05458368.1| response regulator receiver protein [Brucella ceti B1/94] gi|256256696|ref|ZP_05462232.1| response regulator receiver protein [Brucella abortus bv. 9 str. C68] gi|256261874|ref|ZP_05464406.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260166895|ref|ZP_05753706.1| response regulator receiver protein [Brucella sp. F5/99] gi|260544242|ref|ZP_05820063.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260564205|ref|ZP_05834690.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260568613|ref|ZP_05839082.1| response regulator receiver [Brucella suis bv. 4 str. 40] gi|260757134|ref|ZP_05869482.1| response regulator receiver protein [Brucella abortus bv. 6 str. 870] gi|260759496|ref|ZP_05871844.1| response regulator receiver protein [Brucella abortus bv. 4 str. 292] gi|260762740|ref|ZP_05875072.1| response regulator receiver protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882944|ref|ZP_05894558.1| response regulator receiver protein [Brucella abortus bv. 9 str. C68] gi|261215552|ref|ZP_05929833.1| response regulator receiver protein [Brucella abortus bv. 3 str. Tulya] gi|261216683|ref|ZP_05930964.1| response regulator receiver protein [Brucella ceti M13/05/1] gi|261219915|ref|ZP_05934196.1| response regulator receiver protein [Brucella ceti B1/94] gi|261313844|ref|ZP_05953041.1| response regulator receiver protein [Brucella pinnipedialis M163/99/10] gi|261318916|ref|ZP_05958113.1| response regulator receiver protein [Brucella pinnipedialis B2/94] gi|261319551|ref|ZP_05958748.1| response regulator receiver protein [Brucella ceti M644/93/1] gi|261323682|ref|ZP_05962879.1| response regulator receiver protein [Brucella neotomae 5K33] gi|261749808|ref|ZP_05993517.1| response regulator receiver protein [Brucella suis bv. 5 str. 513] gi|261753051|ref|ZP_05996760.1| response regulator receiver protein [Brucella suis bv. 3 str. 686] gi|261756276|ref|ZP_05999985.1| response regulator receiver [Brucella sp. F5/99] gi|265987081|ref|ZP_06099638.1| response regulator receiver protein [Brucella pinnipedialis M292/94/1] gi|265989404|ref|ZP_06101961.1| response regulator receiver protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993496|ref|ZP_06106053.1| response regulator receiver protein [Brucella melitensis bv. 3 str. Ether] gi|265996742|ref|ZP_06109299.1| response regulator receiver protein [Brucella ceti M490/95/1] gi|294853073|ref|ZP_06793745.1| response regulator [Brucella sp. NVSL 07-0026] gi|297250054|ref|ZP_06933755.1| response regulator [Brucella abortus bv. 5 str. B3196] gi|306841233|ref|ZP_07473948.1| response regulator [Brucella sp. BO2] gi|306845393|ref|ZP_07477968.1| response regulator [Brucella sp. BO1] gi|17984174|gb|AAL53291.1| sensory transduction histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|23463377|gb|AAN33255.1| response regulator [Brucella suis 1330] gi|62197195|gb|AAX75494.1| response regulator [Brucella abortus bv. 1 str. 9-941] gi|82939270|emb|CAJ12208.1| Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148369691|gb|ABQ62563.1| response regulator [Brucella ovis ATCC 25840] gi|161336944|gb|ABX63248.1| Hypothetical protein BCAN_B0046 [Brucella canis ATCC 23365] gi|163674964|gb|ABY39074.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020847|gb|ACD73568.1| Response regulator receiver [Brucella abortus S19] gi|225616370|gb|EEH13418.1| sensory transduction histidine kinase [Brucella ceti str. Cudo] gi|225642015|gb|ACO01928.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237787378|gb|EEP61594.1| sensory transduction histidine kinase [Brucella abortus str. 2308 A] gi|255997498|gb|ACU49185.1| response regulator [Brucella microti CCM 4915] gi|260097513|gb|EEW81387.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260151848|gb|EEW86941.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260155278|gb|EEW90359.1| response regulator receiver [Brucella suis bv. 4 str. 40] gi|260669814|gb|EEX56754.1| response regulator receiver protein [Brucella abortus bv. 4 str. 292] gi|260673161|gb|EEX59982.1| response regulator receiver protein [Brucella abortus bv. 2 str. 86/8/59] gi|260677242|gb|EEX64063.1| response regulator receiver protein [Brucella abortus bv. 6 str. 870] gi|260872472|gb|EEX79541.1| response regulator receiver protein [Brucella abortus bv. 9 str. C68] gi|260917159|gb|EEX84020.1| response regulator receiver protein [Brucella abortus bv. 3 str. Tulya] gi|260918499|gb|EEX85152.1| response regulator receiver protein [Brucella ceti B1/94] gi|260921772|gb|EEX88340.1| response regulator receiver protein [Brucella ceti M13/05/1] gi|261292241|gb|EEX95737.1| response regulator receiver protein [Brucella ceti M644/93/1] gi|261298139|gb|EEY01636.1| response regulator receiver protein [Brucella pinnipedialis B2/94] gi|261299662|gb|EEY03159.1| response regulator receiver protein [Brucella neotomae 5K33] gi|261302870|gb|EEY06367.1| response regulator receiver protein [Brucella pinnipedialis M163/99/10] gi|261736260|gb|EEY24256.1| response regulator receiver [Brucella sp. F5/99] gi|261739561|gb|EEY27487.1| response regulator receiver protein [Brucella suis bv. 5 str. 513] gi|261742804|gb|EEY30730.1| response regulator receiver protein [Brucella suis bv. 3 str. 686] gi|262551039|gb|EEZ07200.1| response regulator receiver protein [Brucella ceti M490/95/1] gi|262764366|gb|EEZ10398.1| response regulator receiver protein [Brucella melitensis bv. 3 str. Ether] gi|263000073|gb|EEZ12763.1| response regulator receiver protein [Brucella melitensis bv. 1 str. Rev.1] gi|263091354|gb|EEZ15890.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|264659278|gb|EEZ29539.1| response regulator receiver protein [Brucella pinnipedialis M292/94/1] gi|294818728|gb|EFG35728.1| response regulator [Brucella sp. NVSL 07-0026] gi|297173923|gb|EFH33287.1| response regulator [Brucella abortus bv. 5 str. B3196] gi|306274309|gb|EFM56121.1| response regulator [Brucella sp. BO1] gi|306288755|gb|EFM60077.1| response regulator [Brucella sp. BO2] Length = 120 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 93/116 (80%), Positives = 110/116 (94%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL KAGY V +NGASAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLVKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDLK+MFITGFAAVALNPDS+AP++AKVLSKPFHLRDLVNE+ ++L Sbjct: 62 ELARRATEIDPDLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 117 >gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 237 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L +L GY V ++G +A + + EP+ L+L D++MP +DG+ Sbjct: 8 RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLT 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR + V+ +T AV L KPF L +L+ V LL Sbjct: 68 ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRR 124 >gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 243 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +RR L L GY+VV+ +G A + R L++ D++MP++DG Sbjct: 5 KERILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 224 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+LL +D++ M L L AGY G A ++EE + L+L DI+MPE DG Sbjct: 2 KKLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPETDGW 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ R+ ++ + V+ +T +SKPF ++L+ ++ +L N Sbjct: 62 EVCRQIRKM-SQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRRSN 120 >gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 238 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEV +G +A V E+ L++ D+++P++D Sbjct: 1 MPKKILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+AR + D+ ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVAREIRKKH-DMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 Query: 121 KN 122 +N Sbjct: 120 QN 121 >gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 235 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 64/119 (53%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ILLAED++ + + L GY+V + NNG A K +EE F+L++ D++MPE+DG Sbjct: 4 KKRILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +A + ++ +MF+T L+KPF+L +L+ VN L+ Sbjct: 64 FVVAETIRLENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKR 122 >gi|94263432|ref|ZP_01287245.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94271768|ref|ZP_01292012.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450346|gb|EAT01573.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456162|gb|EAT06301.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 461 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 68/118 (57%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ MR FL L + G+ V +G +A ++R+E F LL++DI MP +G+E Sbjct: 3 RILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L +A +L P+L V+ +T FA+ + L+KPF + ++ + V+ L+ + Sbjct: 63 LLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSR 120 >gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] Length = 255 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AGYEV S +G A E L++ D+++P+MDG Sbjct: 25 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 84 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ D+ ++F+T + + ++KPF L ++V +N +L Sbjct: 85 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 141 >gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 226 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G + NG A D + L++ DI+MPEMDG E Sbjct: 5 RILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDGWE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R + D D+ ++ +T + L KPF +LV V LL Sbjct: 65 LCRELRDYD-DVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKR 120 >gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus] Length = 267 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + ++ L +AGY V ++G +A + L++ D+++P MDG E Sbjct: 19 RVLVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPAMDGFE 78 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR E P + V+ +T ++KPF R+LV V+ +L Sbjct: 79 VCRRMREHGP-VPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVL 132 >gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4] Length = 238 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L +AGY V++ N+G Y+ + ++ D+++P+MD Sbjct: 1 MSKKILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + + ++ +T ++KPF R++V + +L Sbjct: 61 GIEVCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRR 120 >gi|95931004|ref|ZP_01313732.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132900|gb|EAT14571.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 454 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N ++L+ +D+ +R L ++L K GY V + +G A D VR + L+ DI +P +DG Sbjct: 3 NYRVLVVDDEHLIRWSLEQSLKKQGYHVQTVGSGEEALDYVRSDSPDLVFLDIQLPGIDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IE + E+D D+ V+ IT + + ++KPF+L +L + + L + Sbjct: 63 IETLEKIKEIDSDISVIMITALGVLETAVKAMQLGAYDYINKPFNLDELSVVLRKALETQ 122 >gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 236 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GY V +G A +KV E L++ DI++P+ D Sbjct: 1 MDKKILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIMLPKRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-NMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119 >gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY+ +GA A +K L++ DI MP MDG+ Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGL 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L + LL + Sbjct: 71 TAARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130 >gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 383 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D + L L + GYEV N+GA A V E ++L DI MP M+G E+ Sbjct: 13 ILIVDDTPNNLHLLSSMLEEQGYEVRCANSGAIALRAVEMEHPDIILLDINMPNMNGYEV 72 Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R LDP D+ V+F++ + + ++KPF L +++ + ++++ Sbjct: 73 CERLK-LDPRTRDIPVIFLSALSETIDKVKAFRIGGIDYITKPFQLEEVLARLENHISLR 131 >gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] Length = 227 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD + + L GYEVV C +G++A + +E L+L D+++P MD Sbjct: 1 MSSRILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ R + D ++ +T + + + KPF ++LV V L Sbjct: 61 GFDVCRAIRRV-SDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23] gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23] gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 237 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GY+VV+ +G A KV E L+L D+++P++D Sbjct: 1 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+AR+ + D ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 >gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q +IL+ +D++ +RR + L + G+EV +G A K + ++L++ D+++P M Sbjct: 1 MAQTRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLMLPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG ++ + + ++ +M +T A + KPF R+LV V +L Sbjct: 61 DGRDVCAQIRQ-HSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLK 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+AED+ + R L L GY+V +G A + R + L++ DI++P Sbjct: 1 MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ RR D ++ +T ++V ++KPF + +L+ + L I Sbjct: 61 GIEILRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRI 120 Query: 121 KN 122 K+ Sbjct: 121 KS 122 >gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 256 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 55/115 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ +R L +L GY+V + +G A V + L+L DI+MP MDG+ Sbjct: 18 RVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIMMPRMDGLT 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + V+ +T AV L+KPF L +L+ V LL Sbjct: 78 AVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALL 132 >gi|238920098|ref|YP_002933613.1| acetoacetate metabolism regulatory protein AtoC [Edwardsiella ictaluri 93-146] gi|238869668|gb|ACR69379.1| acetoacetate metabolism regulatory protein AtoC, putative [Edwardsiella ictaluri 93-146] Length = 458 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 58/118 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++++RR L A G+E +NG A + P ++L DI MP M GI+ Sbjct: 6 RILIVDDEENVRRMLTTAFALQGHETYDASNGEEALQCFADAPPDVVLMDIRMPTMSGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P V+ +T +A VA ++ + KPF L +L + R L ++ Sbjct: 66 ALKIMRTRQPRTPVILMTAYAEVATAVEALRSGAFDYVIKPFDLEELNLLIRRALQLQ 123 >gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q +IL+ +D++ +RR + L + G+EV +G A +K + ++L++ D+++P M Sbjct: 1 MAQTRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLMLPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG ++ + + ++ +M +T A + KPF R+LV V +L Sbjct: 61 DGRDVCAQIRQ-HSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLK 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 237 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P D Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 238 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GY+VV+ +G A KV E L+L D+++P++D Sbjct: 2 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+AR+ + D ++ +T + ++KPF R+LV V L Sbjct: 62 GLEVARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 120 >gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp. subtilis str. 168] gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp. subtilis str. SMY] gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5] gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto BEST195] gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus subtilis subsp. spizizenii str. W23] gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5] Length = 236 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GYEV ++G A + V E L+L DI++P D Sbjct: 2 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 62 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 240 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 61/117 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ ++R L +L AG++V + ++G +A E L++ D+++P++DG E Sbjct: 12 RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGFE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E + V+F+T V ++KPF L ++V + +L Sbjct: 72 VTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128 >gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 227 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD + + L G+ VV C +G+ A + +E L+L D+++P MD Sbjct: 1 MSSRILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ R + D+ ++ +T + + + KPF ++LV V L Sbjct: 61 GFDVCRAIRHV-SDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119 Query: 121 KN 122 ++ Sbjct: 120 RD 121 >gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 238 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++ +IL+ +D++ +RR L L K GYE+ +G A K +S++L D+++P Sbjct: 1 MSEQSNRILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVMLP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDGIE+ R + V+ +T + KPF R+++ V + Sbjct: 61 GMDGIEVCTRLRQTKS-TPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAI 119 Query: 118 LTIKN 122 L + Sbjct: 120 LRRSS 124 >gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L] gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W] gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L] gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W] gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 290 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +DD + + L +AG V +G SA + L++ D+++P MDG+E Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR P + V+ +T ++KPF R+LV V +L Sbjct: 78 VCRRMRARHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133 >gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 243 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 51/120 (42%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R L ++L GY +G A K LL+ DI MP MDG+ Sbjct: 8 ERILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGL 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR + V+ +T V L KPF L +L + LL + Sbjct: 68 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 127 >gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 228 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ +DD ++ + L K G+EV NNG P ++++ DI++P DG Sbjct: 4 NYKILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLPGKDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++ R + D+ ++ +T + + KPF ++L+ V +L Sbjct: 64 WDICREIRRM-SDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRY 122 Query: 122 N 122 N Sbjct: 123 N 123 >gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri] gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112] Length = 235 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEVV +G +A ++V E L++ D+++P++D Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A+R + ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 Query: 121 K 121 + Sbjct: 120 Q 120 >gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L PD +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 234 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ ++ L +L AG+EV + + G A + L++ D+++P+MDG E Sbjct: 9 RLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPDMDGFE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR V+++T A ++KPF L +++ + +L Sbjct: 69 IVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRR 125 >gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 248 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ ED+ +R + + L + GY V +NG + R L+L D++MP MDG+ Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E RR + + V+F+T ++KPF + +L+ V L + Sbjct: 83 EFLRRFRATE-QVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141 >gi|254504327|ref|ZP_05116478.1| response regulator receiver domain, putative [Labrenzia alexandrii DFL-11] gi|222440398|gb|EEE47077.1| response regulator receiver domain, putative [Labrenzia alexandrii DFL-11] Length = 119 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 95/116 (81%), Positives = 108/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMRRFL KAL AGY+VVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDNDMRRFLAKALENAGYDVVSFDNGKSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRAT+LDPDLKVMFITGFAAVALNP+S+APK+AKVLSKPFHL+DLV EV R+L Sbjct: 63 LARRATQLDPDLKVMFITGFAAVALNPESDAPKDAKVLSKPFHLKDLVQEVERMLA 118 >gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] Length = 234 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GLEVCREIRK-NSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 225 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN K+L+ +DD +R + L G+ V NG A K+ EE L + DI+MP+MD Sbjct: 1 MN-KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E ++ D+ ++ +T + ++ L+KPF + +L+ + LL Sbjct: 60 GYEFCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRR 119 >gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942] gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942] Length = 236 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GYEV +G A + V E L+L DI++P D Sbjct: 2 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 62 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRR 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L ++L GY++ +G A D + +E L++ D++MP+MDG+E Sbjct: 2 KIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L KPF L +L+ V LL Sbjct: 62 VCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRR 118 >gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125] gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125] Length = 238 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+D +R L L + Y+V ++G A +K + ++L D++MPEMDGIE Sbjct: 6 KILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + ++ + ++ +T A + KPF R++V V LL + Sbjct: 66 VCQKLRKQK-ATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 123 >gi|118580077|ref|YP_901327.1| two component sigma54 specific Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502787|gb|ABK99269.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 462 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 56/119 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ MR FL L GYE V + A + F L+++D+ MP +D Sbjct: 1 MKTRILIVDDELSMREFLSILLEGEGYETVVAAHAEQALSLLDSGLFDLVISDVQMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 GIEL R + P V+ +T + A ++ +SKPF + ++ + L Sbjct: 61 GIELLSRIKTVSPGTAVLMMTAYCAAEQAVEAMKLGAYDYISKPFKVEEIKVLIRNALE 119 >gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis] Length = 283 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+ Sbjct: 51 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 110 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+AR + D+ ++ +T + ++KPF R+LV V L Sbjct: 111 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 167 >gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564] gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY V+ ++GA A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L PD +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|78221776|ref|YP_383523.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193031|gb|ABB30798.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 457 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + KIL+ +D+ +R L + L K GYEVVS NG A VR+E L+L DI +P + Sbjct: 1 MRKTKILVVDDEHLIRWSLEQNLKKQGYEVVSAGNGEDALRLVRDEQPDLVLLDIQLPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+++ + E D ++ V+ +T A+ + ++KPF+L ++ + + L Sbjct: 61 SGLDVLEKIKEHDEEIIVIMVTAHGALETAVHAMRLGAFDYINKPFNLDEMAIVIRKALE 120 >gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] Length = 235 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LG+AG+EV+ NG + + ++ L++ DI+MP DG Sbjct: 3 NKRILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTLQHTTPDLIILDIMMPGEDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L R+ + D + ++ +T A ++K F R+L+ + +L Sbjct: 63 FCLCRQLRQ-DSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRS 121 Query: 122 N 122 Sbjct: 122 Q 122 >gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032] gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032] gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K GYEV +G A + V E ++L DI++P D Sbjct: 1 MEKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRR 119 Query: 121 K 121 + Sbjct: 120 Q 120 >gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 1117 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L L GY V++ ++G A + ++ +L+L DI+MPEM G E+ Sbjct: 711 LLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEV 770 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E +L ++ ++ V L+KPF+ +L+ ++ L Sbjct: 771 CHILREEHSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHLQ 827 >gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1566 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLA+D+ DMR ++ + L YEV + ++G + + + E L+LTD++MP +DG E Sbjct: 397 RILLADDNADMRDYIKRLLTDL-YEVETVSDGIAVLEALARELPDLVLTDVMMPGLDGFE 455 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R + ++ ++ A + L KPF R+L+ V L + Sbjct: 456 LLRELRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHLKM 514 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD D R FL L +AG +VV+ + A + +LL DI MPE+DG L Sbjct: 1447 ILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVLAGSKPDVLLCDIGMPEIDGYML 1506 Query: 65 ARRAT---ELDPDLKV--MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111 ++ + + + +T +A + + +SKP +L+ Sbjct: 1507 IKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIKPEELL 1558 >gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 237 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D++ +RR L L + Y+V NG A K + + L++ D++MP MDGIE Sbjct: 6 RILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + ++ +T A + KPF R++V V LL Sbjct: 66 VCEKIRKQK-ATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus DSM 14838] gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus DSM 14838] Length = 243 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 IL+ ED+ + L L + GY+ + +G R F L+++DI++P+MDG Sbjct: 17 HTILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHTFDLVISDIILPKMDGF 76 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL + + +P + ++ +T + D + KPF R+L + LL N Sbjct: 77 ELCKEIRKTNPGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRNN 136 >gi|254720702|ref|ZP_05182513.1| response regulator receiver protein [Brucella sp. 83/13] gi|265985753|ref|ZP_06098488.1| response regulator receiver protein [Brucella sp. 83/13] gi|306839345|ref|ZP_07472161.1| response regulator [Brucella sp. NF 2653] gi|264664345|gb|EEZ34606.1| response regulator receiver protein [Brucella sp. 83/13] gi|306405593|gb|EFM61856.1| response regulator [Brucella sp. NF 2653] Length = 120 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 94/116 (81%), Positives = 110/116 (94%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFLIKAL KAGY V +NGASAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLIKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDLK+MFITGFAAVALNPDS+AP++AKVLSKPFHLRDLVNE+ ++L Sbjct: 62 ELARRATEIDPDLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 117 >gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D+ + + L +AG+ V+S +G SA R+E SL++ D+++P MD Sbjct: 1 MKRTILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMD 60 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+++ R + L + ++ +T ++KPF R+LV V +L Sbjct: 61 GLDVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB] gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain [Syntrophus aciditrophicus SB] Length = 245 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ D+ L L K G+ V +G A +R L++ D+++P + G Sbjct: 14 QKRILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSG 73 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +++ R+ E L V+ +T ++KPF++R+LV V +L Sbjct: 74 LDICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLR 133 Query: 120 IKN 122 + Sbjct: 134 RSS 136 >gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 508 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N KIL+ +D+ D+ L L AGY +G A + + E + L+L DI MP +DG Sbjct: 3 NLKILIVDDEADIALILKLQLEDAGYRTTRARDGLEALEMLAREHYDLILLDIRMPRLDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IE+ R + P+L V+ +T + + ++ +SKPF D+ V R + Sbjct: 63 IEVLERIRQEWPELVVVMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIE 120 >gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Rv] gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Ra] gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis F11] gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis H37Ra] gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 94_M4241A] gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis GM 1503] gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210] gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207] gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506] gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475] gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium tuberculosis H37Ra] gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis F11] gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis CDC1551A] gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis W-148] gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 4207] Length = 230 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +D Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580] gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580] gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] Length = 235 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K GYEV +G A V + ++L DI++P D Sbjct: 1 MEKKILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRR 119 Query: 121 KN 122 +N Sbjct: 120 QN 121 >gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa SC2] Length = 243 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L L K GYEV+ +G SA D ++ L+L D+++P MD Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQQPDLILLDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R ++ +T ++KPF R+L+ V + Sbjct: 61 GMDVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRR 120 Query: 121 KN 122 + Sbjct: 121 QQ 122 >gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 240 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + + L +AGY V +G A + L++ D+++P MDG+E Sbjct: 12 RVLVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLMLPGMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR P + V+ +T ++KPF R+LV V +L Sbjct: 72 VCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 127 >gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597] gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597] Length = 231 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L PD +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 321 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + + + L AG++V +G +A P L++ D+++P +DGIE Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + RR P + V+ +T A + ++KPF R+L V +L N Sbjct: 117 VFRRLRAHRP-VPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRAN 174 >gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W] gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II] Length = 238 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GY+VV+ +G A KV E L+L D+++P++D Sbjct: 2 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+AR+ + D ++ +T + ++KPF R+LV V L Sbjct: 62 GLEVARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 120 >gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++L+ +DD + FL ++L GY+V N+G A V P L++ DI+MP++D Sbjct: 1 MSLRVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E+ RR ++ +T AV+ L KPF L +L+ + L Sbjct: 61 GLEVCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRAL 117 >gi|70732213|ref|YP_261969.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68346512|gb|AAY94118.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 465 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ +D+ + L AL + G +V + NG A + +E L+++D MP MD Sbjct: 1 MTHNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L + P L V+ +T ++ V S ++KPF + +L V++ L Sbjct: 61 GPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQF 120 Query: 121 KN 122 ++ Sbjct: 121 RD 122 >gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 236 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GYEVV +G A DKV E L+L DI++P+ D Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 GIE+ R + D+ ++ +T + ++KPF R+L+ V Sbjct: 61 GIEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKA 115 >gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 238 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+ +D++ +RR L L K GYE+ +G +A + + L++ D+++P +DG+ Sbjct: 6 HRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLPGIDGV 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ R ++ V+ +T + KPF R+++ V +L + Sbjct: 66 EVCSRLRQVK-ATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSS 124 >gi|254424941|ref|ZP_05038659.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192430|gb|EDX87394.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 216 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 68/120 (56%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+A+D+ +R + +AL GYEV + +G++A ++++E P LLL DI MP M G Sbjct: 3 NASILVADDEKSIRLTVAQALSSQGYEVATAIDGSTALEQLKETPTDLLLLDIQMPGMTG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 IE+ ++A P LKV+ ++ +V ++ L KPF +L VNR+L + Sbjct: 63 IEVLQKAITQQPSLKVVMVSAHGSVDNAVEAMKLGAVDYLQKPFTPSELRELVNRVLERE 122 >gi|222056452|ref|YP_002538814.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221565741|gb|ACM21713.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 457 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M I++ +D+ MR FL+ L + GY V C + A A ++ F L+++D+ MP ++ Sbjct: 1 MAATIMVVDDEQSMREFLVILLEREGYAVQQCESAACALSLLQSSGFDLVISDVNMPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+EL R P+ V+ IT + ++ ++KPF + ++ V L Sbjct: 61 GMELLERIKSTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALE 119 >gi|85860826|ref|YP_463028.1| response regulator [Syntrophus aciditrophicus SB] gi|85723917|gb|ABC78860.1| response regulator with sigma 54 interaction domain [Syntrophus aciditrophicus SB] Length = 502 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +D+ +MR L L K GY+V +G A + + +E +++TD+ MP++ G+ Sbjct: 2 EKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L T P+ V+ IT + D+ ++KPF +L++ + + + + Sbjct: 62 GLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTR 120 >gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ + + L +AG+EV++ +NG REE L++ D+++P +DG Sbjct: 6 ERILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLPGIDGF 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R +L V+ +T ++KPF R+L V +L Sbjct: 66 EVLRALRR-HSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRR 122 >gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 275 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62 ++L+ +DD + LG+AGY+V ++G +A + V L++ D+++P MDG Sbjct: 44 RVLVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPGGMDGF 103 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ RR P + V+ +T ++KPF R+LV V +L Sbjct: 104 EVCRRIRARGP-VPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRR 160 >gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 620 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD Sbjct: 1 MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ R+ E ++ ++ ++ + L+KPF+ +L V L+ Sbjct: 61 GIEVCRKVRESL-NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119 >gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family [Nitrosococcus watsonii C-113] Length = 231 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ +R L AL + GY +G A+ ++ E L+L D ++P + Sbjct: 3 MAATILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLPGIS 62 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++LARR +L V+ +T ++KPF +L+ + +L Sbjct: 63 GVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKAVL 122 Query: 119 TI 120 Sbjct: 123 RR 124 >gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea] Length = 247 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D+ MRR L L GY V+S ++G A + R+E +L++ DI+MP++DG Sbjct: 12 TILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIMMPKLDGFG 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + D+ ++ +TG + L KPF ++L + +L + Sbjct: 72 VCQEIRKE-SDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRSD 129 >gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51] gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD+ +R + L GY++ +NG SA +KVR++ F L++ D++MP +DG Sbjct: 2 KILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGWT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + + ++ +T + KPF R+L V +L Sbjct: 62 VCKVLRKETK-IPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRR 117 >gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 227 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ +R + + L + GY V +NG +VR L+L D++MP MDG+ Sbjct: 2 KTILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLDMMMPGMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E RR + V+F+T A ++KPF + +L+ V L N Sbjct: 62 EFLRRFRAAE-HAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRRGN 120 >gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] Length = 228 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL +D+ ++ + L +AGYEV ++G A + ++ L++TDI+MP MD Sbjct: 1 MTKRILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQKYSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L L PD +FIT + S + ++KPF R+LV VN +L Sbjct: 61 GYDLIGEVQYLAPDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRR 120 >gi|301059927|ref|ZP_07200811.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300445982|gb|EFK09863.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 386 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 65/117 (55%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL +D++ +R L AL GYEV++ +G A R++ S++LTDI MP MD Sbjct: 1 MTEKILLVDDEEGIRTVLGIALADYGYEVLTAASGGEAVSVFRKQKPSIVLTDIKMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GI++ R+ E PD +V+ ITG + L +S ++KP + L + R Sbjct: 61 GIQVLRKIKEESPDTEVIMITGHGDLELAIESLKCDATDFITKPINDDALEIALKRA 117 >gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL J2-003] Length = 225 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A + E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|148262577|ref|YP_001229283.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396077|gb|ABQ24710.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 456 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + KIL+ +D+ +R L + L K GYEV + NG A VREE L+L DI +P + Sbjct: 1 MRKTKILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLVREEQPDLVLLDIQLPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E+ + E D D+ V+ +T + ++ ++KPF+L +L + + L Sbjct: 61 GGLEVLEKVKEFDEDIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDELSIVIKKALE 120 >gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus 10329] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + + + + L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGGAMWQLLNDHHPDLIILDIMMPGEDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ + + D+ ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRS 121 Query: 122 N 122 Sbjct: 122 Q 122 >gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY+V + +G A D + L+ D+ MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR DL ++ +T V+ L KPF L +L+ + LL Sbjct: 62 VCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus ATCC 53653] gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +LLAEDD +R L +AL GY V S ++G A + E +++ D++MP +D Sbjct: 1 MTNTVLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++ R ++ +T A + ++KPF + ++ + LL Sbjct: 61 GIQVCRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRR 120 >gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 52/118 (44%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY+ +GA A +K LL+ DI MP MDG+ Sbjct: 13 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDIQMPRMDGL 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ARR ++ +T V L KPF L +L + LL Sbjct: 73 TAARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130 >gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 241 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+LL ED+ + L L GY V +G +A ++ L++ D+++P ++ Sbjct: 1 MKPKVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVMLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R+ V+F++ A + L+KPFHL + + V LL Sbjct: 61 GLQVCRQMRAQGQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLLRR 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 227 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ +R + + L + GY V +NG + R P L+L D++MP MDG+ Sbjct: 2 KTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E R+ D VMF+T A L+KPF + +L+ + LL Sbjct: 62 EFLRKYRA-DAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRR 118 >gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 233 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD+ +R + + L AG+ V NGA K L++ D++MP ++G+E Sbjct: 7 RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVMMPGINGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +R ++ + ++ +T ++KPF ++L V +L Sbjct: 67 VCKRLRQV-SQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRR 122 >gi|255028239|ref|ZP_05300190.1| hypothetical protein LmonL_01479 [Listeria monocytogenes LO28] Length = 202 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 236 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K GY+V +G A KV + L+L DI++P+ D Sbjct: 3 MEKKILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKD 62 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 63 GMEVCREIRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 121 >gi|162450832|ref|YP_001613199.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161161414|emb|CAN92719.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 481 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ ++RR L L + GYEV + +G ++E L++TD+ MP++DG Sbjct: 5 KKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 ++L R A DP V+ +T V ++ ++KPF ++ V + L + Sbjct: 65 MDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRTR 124 Query: 122 N 122 + Sbjct: 125 D 125 >gi|85860919|ref|YP_463121.1| response regulator receiver domain-containing protein [Syntrophus aciditrophicus SB] gi|85724010|gb|ABC78953.1| response regulator receiver domain and a sigma factor phosphatase domain [Syntrophus aciditrophicus SB] Length = 402 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D D+R L + L KAGY++ ++G +V+ L+L DIVMP +D Sbjct: 1 MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKAWKPDLILLDIVMPGID 60 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++ R D+ V+F++ + A A A ++KPF +++ + Sbjct: 61 GYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIENQF 120 Query: 119 TIKN 122 I++ Sbjct: 121 KIRH 124 >gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GYEV +G A +KV E L+L DI++P+ D Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRR 119 >gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ + + L L K+G++VV+ +G A + V+ E ++ D+++P+MDG++ Sbjct: 3 KVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDGMD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + + ++ +T L+KPF R+++ V +L Sbjct: 63 VCKTLRQERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILRR 119 >gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ IL+ +D+ ++R + LG G+EV NGA A + ++ F L++ DI+MP Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +G + R+ EL + ++F++ + + L+KPF +L++ L+ Sbjct: 61 NGYQTCRKIREL-SNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161] gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 225 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1382 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N +I+LA+D+ DMR ++ + L K Y+V + +G +A + +R P L+LTD++MP+++G Sbjct: 628 NARIILADDNADMREYVKRLLNKL-YQVEAVGDGMAALEAIRRHPPDLVLTDVMMPQLNG 686 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL ++ L +L ++ ++ A ++ L KPF R+L+ + L Sbjct: 687 FELLQQLRSNPLTQELPIILLSARAGEEYLVEALEAGADDYLVKPFSARELLVRIEANLK 746 Query: 120 I 120 + Sbjct: 747 M 747 >gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+ +DD +R + L G++V +G A K+ +++ D++MP MD Sbjct: 1 MN-KILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVMMPNMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L R E DL ++ +T + L KPF +LV V LL Sbjct: 60 GWQLCRELREHY-DLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKR 118 >gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 251 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D++ +R L AL GY+V + G A V L+L D+ +P++ G E Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R + + V+F+TG V ++KPF L+++ V LL Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRR 144 >gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 230 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L ++L GYEV +G A + + E L++ D++MP MDG+E Sbjct: 2 KIVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L KPF L +L+ V LL Sbjct: 62 VCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRR 118 >gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 231 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D++ +R + L K G+ V +G A K + L++ D+++P++DG ++ Sbjct: 6 ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLPKLDGWDV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + ++ ++ +T L+KPF R+LV V +L Sbjct: 66 CREVRKF-SEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRR 120 >gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus 16] gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus 16] Length = 235 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + ++++ L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHTPDLIILDIMMPGDDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L ++ D + ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRR-DSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 >gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL103PA1] Length = 232 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVMMPRLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+E R D+ ++ +T AV D + KPF L +L+ + L Sbjct: 61 GLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRAL 117 >gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] Length = 234 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 246 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 53/121 (43%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ +R L ++L GY+ +GA A +K L++ DI MP MDG Sbjct: 12 TQRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ARR ++ +T V L KPF L +L + LL Sbjct: 72 LTAARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131 Query: 122 N 122 + Sbjct: 132 S 132 >gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA] gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA] Length = 232 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L L P+ +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|110635084|ref|YP_675292.1| response regulator receiver protein [Mesorhizobium sp. BNC1] gi|110286068|gb|ABG64127.1| response regulator receiver protein [Chelativorans sp. BNC1] Length = 120 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 96/116 (82%), Positives = 108/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDDDMRRFL+KAL +AGYEVV +NGA AY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDDDMRRFLVKALERAGYEVVDFDNGAGAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATE+DPDLKVMFITGFAAVALNPDS AP++AKVLSKPFHLR+LV EV +LL Sbjct: 63 LARRATEIDPDLKVMFITGFAAVALNPDSKAPRDAKVLSKPFHLRELVTEVEKLLQ 118 >gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + Y + +NG A K E + L+L D++MP DGIE Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ E ++ +T A + KPF R++V V LL Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 >gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 253 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +RR L L GY+VV+ ++G A + RE L++ D++MP++DG Sbjct: 13 KETILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVMMPKLDG 72 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 73 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130 >gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 231 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL +DD + L GYEV++ +G A + + E L++ DI+MP + Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ ++ E D+ V+ +T + ++KPF ++L+ + +L Sbjct: 61 GFEVLKKIRE-RSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL 117 >gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland 1988] gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S] gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] Length = 225 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 230 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD +R + AL KAG VV +G+ + + L++ DI MPEMD Sbjct: 1 MAATILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E RR + ++ ++F++ ++KPF R+LV VN +L Sbjct: 61 GLETCRRIRK-TSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKR 119 >gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 61/121 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ EDD + R L LG GY V S ++G + R E L++ D+++P M Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + DP+L ++ ++ L KPF L++L+ ++ LL Sbjct: 61 GLEVIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRR 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e] gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL R2-561] gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e] Length = 225 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 273 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ ED+ + L L K G+EV ++G A ++ EEP L+L D+++P D Sbjct: 39 MAAKILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTD 98 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ R+ E + ++ +T + ++KPF R+L+ + L Sbjct: 99 GIEICRKVREKY-RMPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRR 157 >gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2] Length = 251 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+ ++R L +L AG++VVS NGA A + LL+ D+++P+MDG Sbjct: 12 TLLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGFT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR ++ + V+F+T + ++KPF L ++V + +L Sbjct: 72 VTRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128 >gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D++ +RR L L + Y++ +NG A + + + L+L D++MP MDG+E Sbjct: 6 TLLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMPGMDGVE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + VM +T A + KPF R++V V LL Sbjct: 66 MCQELRKKK-ATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRR 121 >gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] Length = 243 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L L K GY+V+ +G +A D ++ L+L D+++P MD Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R ++ +T ++KPF R+L+ V + Sbjct: 61 GMDVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRR 120 Query: 121 KN 122 + Sbjct: 121 QQ 122 >gi|257457919|ref|ZP_05623078.1| acetoacetate metabolism regulatory protein AtoC [Treponema vincentii ATCC 35580] gi|257444632|gb|EEV19716.1| acetoacetate metabolism regulatory protein AtoC [Treponema vincentii ATCC 35580] Length = 456 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 59/121 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ ++R L AL GYEV++ +G K E L++TD+ MP + Sbjct: 1 MKFKILVIDDEKNIREGLQMALEDEGYEVLTAEDGTDGLQKALSEVVDLVITDLRMPGVG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR T P + V+ +TG V ++ L+KP L L V R L Sbjct: 61 GQEILRRVTSETPGVPVIVLTGHGTVEAAVEAMRMGAYDFLTKPLDLDRLSLLVKRALQN 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 1131 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L L GY V++ ++G A + ++ +L+L DI+MPEM G E+ Sbjct: 725 LLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEV 784 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E +L ++ ++ V L+KPF+ +L+ ++ L Sbjct: 785 CHILREEYSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHLQ 841 >gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] Length = 234 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 234 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|324112763|gb|EGC06739.1| sigma-54 interaction domain-containing protein [Escherichia fergusonii B253] gi|325496734|gb|EGC94593.1| acetoacetate metabolism regulator (two-component system response regulator) [Escherichia fergusonii ECD227] Length = 461 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 2/124 (1%) Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN +IL+ +D++++RR L A GY+ NG A ++L DI MPE Sbjct: 1 MNAVYRILIVDDEENVRRMLSTAFSLQGYDTHCACNGNEALPLFTRVQPDVVLMDIRMPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDGI + +P ++ +T +A V ++ + KPF L +L V R L Sbjct: 61 MDGISALKAMRGHNPRTPIVLMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLVVQRAL 120 Query: 119 TIKN 122 +++ Sbjct: 121 QLQS 124 >gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M++ +IL+ +D+ +R + +AL GYEV + +G +A ++ EEP L+L ++++P Sbjct: 1 MHETSRILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEPPDLVLLEVMLPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 +DG+ +ARR + +M +TG +V L KP+ +L+ V LL Sbjct: 61 LDGLAVARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816] gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes str. Scott A] Length = 225 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|15900027|ref|NP_344631.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656923|ref|ZP_01407745.1| hypothetical protein SpneT_02001832 [Streptococcus pneumoniae TIGR4] gi|116516719|ref|YP_815548.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985429|ref|ZP_01818634.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148987813|ref|ZP_01819276.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993923|ref|ZP_01823306.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148996490|ref|ZP_01824208.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149001833|ref|ZP_01826806.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007940|ref|ZP_01831518.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149017756|ref|ZP_01834215.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486666|ref|ZP_02711174.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|168489445|ref|ZP_02713644.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|168492607|ref|ZP_02716750.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|168493781|ref|ZP_02717924.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|168577082|ref|ZP_02722911.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|169834091|ref|YP_001693605.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182683051|ref|YP_001834798.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|194397353|ref|YP_002036799.1| response regulator [Streptococcus pneumoniae G54] gi|221231023|ref|YP_002510175.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225855866|ref|YP_002737377.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225860118|ref|YP_002741627.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|237649600|ref|ZP_04523852.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974] gi|237821536|ref|ZP_04597381.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974M2] gi|298230008|ref|ZP_06963689.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254523|ref|ZP_06978109.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501871|ref|YP_003723811.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254821|ref|ZP_07340921.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259126|ref|ZP_07345104.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303260883|ref|ZP_07346832.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303263210|ref|ZP_07349133.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303267317|ref|ZP_07353178.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269588|ref|ZP_07355349.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307066757|ref|YP_003875723.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126308|ref|YP_003878339.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|5830538|emb|CAB54578.1| response regulator [Streptococcus pneumoniae] gi|14971549|gb|AAK74271.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116077295|gb|ABJ55015.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757065|gb|EDK64104.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147760291|gb|EDK67280.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147760563|gb|EDK67538.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147922387|gb|EDK73507.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147926277|gb|EDK77350.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927630|gb|EDK78656.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931320|gb|EDK82298.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168996593|gb|ACA37205.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182628385|gb|ACB89333.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183570301|gb|EDT90829.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|183572088|gb|EDT92616.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|183573247|gb|EDT93775.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|183576175|gb|EDT96703.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|183577322|gb|EDT97850.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|194357020|gb|ACF55468.1| response regulator TCS08 [Streptococcus pneumoniae G54] gi|220673483|emb|CAR67954.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225725157|gb|ACO21009.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225727262|gb|ACO23113.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|298237466|gb|ADI68597.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793386|emb|CBW35751.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301799255|emb|CBW31775.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801044|emb|CBW33711.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598258|gb|EFL65304.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637720|gb|EFL68206.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639544|gb|EFL70001.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640862|gb|EFL71248.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643168|gb|EFL73454.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302646983|gb|EFL77207.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|306408294|gb|ADM83721.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483370|gb|ADM90239.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|327390491|gb|EGE88831.1| response regulator [Streptococcus pneumoniae GA04375] gi|332075745|gb|EGI86212.1| response regulator [Streptococcus pneumoniae GA17570] gi|332076537|gb|EGI86999.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077390|gb|EGI87851.1| response regulator [Streptococcus pneumoniae GA41301] gi|332202007|gb|EGJ16076.1| response regulator [Streptococcus pneumoniae GA41317] gi|332204102|gb|EGJ18167.1| response regulator [Streptococcus pneumoniae GA47901] Length = 232 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L L P+ +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] Length = 236 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +AL G+E + +G A K +++ D+ MP MDG+E Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R DP+L V+F+T AVA ++KPF L ++ V LL Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRR 128 >gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51] gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 225 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KI++ +DD +R + L + G++ +G A +K+ E SL + D++MP MD Sbjct: 1 MS-KIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLMMPNMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL R+ + DL V+ +T L+KPF +L+ V LL Sbjct: 60 GYELCRQLRQYYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLRR 119 >gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GYEV++ N+G A + VR E LL+ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L KPF L +L+ V L+ Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118 >gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 236 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ILL ED+ +R + L + Y V + +G A ++ + F L++ D+++P + G Sbjct: 5 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R + + D+ ++ +T V L KPF R+LV V LL Sbjct: 65 ERVCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR 122 >gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112] gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112] gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 241 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEVV +G +A ++V E L++ D+++P++D Sbjct: 7 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKID 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A+R + ++ +T + ++KPF R+LV V L Sbjct: 67 GLEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 125 Query: 121 K 121 + Sbjct: 126 Q 126 >gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX] gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX] Length = 241 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+ ++R + AL G+EV + +G R E L+L D+++P++ G + Sbjct: 11 HVLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFD 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + D D+ V+++T + + ++KPF + L+ V LL Sbjct: 71 VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRR 127 >gi|256823505|ref|YP_003147468.1| two component Fis family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797044|gb|ACV27700.1| two component transcriptional regulator, Fis family [Kangiella koreensis DSM 16069] Length = 202 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 2/124 (1%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN+ IL+ +DD +R L +AL A Y+V+SC+NG A + V ++++TDI M Sbjct: 1 MNEQATILVVDDDSSIRWVLARALHNAEYKVISCDNGTEAIELVNTHQPNIVITDIQMSG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G+EL + + P L V+ IT +A + ++ L KPF++ ++N + L Sbjct: 61 MSGLELLEKLNQSHPSLPVIMITAYADTDIGSQTHDLGAFDYLPKPFNINQVINICRKAL 120 Query: 119 TIKN 122 + Sbjct: 121 DSRQ 124 >gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] Length = 245 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ IL+ +DD+++ + L K YE +G A E L+L D+++P M Sbjct: 1 MSKNNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG ++ + + ++ ++ V + KPF +LV V LL Sbjct: 61 DGYQVCTEIRK-TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|91779864|ref|YP_555072.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91692524|gb|ABE35722.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1651 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R ++ + L AG+EV +G +A + R+E L+L+D++MP +DG Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHEVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R DP D V+ ++ A D L+KPF R+L+ V Sbjct: 721 LLRALRA-DPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 773 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 + +L+ EDD+++R +++ L GY V+ + SA V P +L TD+VMP + Sbjct: 1376 TETVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPL 1435 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELAR+A E P + V+F +G+ A+ + ++LSKP+ L ++ +L Sbjct: 1436 RSTELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALARKIRYVLQ 1495 Query: 120 IKN 122 +N Sbjct: 1496 TQN 1498 Score = 89.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 57/112 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ +R + L ++++ A + E S++LTD+ + G++ Sbjct: 1536 RILLVEDDELVRASTAELLRMFEFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1595 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 LA PDL+V+F+TG+ V +A +L KP+ L DL++ + Sbjct: 1596 LALEVCAGRPDLRVIFLTGYDLVLTPEQRKVLPHAILLRKPYDLLDLIDALK 1647 >gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 231 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ IL+ ED++D+ + L + G+EV + G ++ R+E L++ D+++P MD Sbjct: 1 MNKNILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLPGMD 60 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E+ + D+ ++ +T + A ++KPF + L+ V +L Sbjct: 61 GLEVCETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 241 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AGYEV S +G A E L++ D+++P+MDG Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ D+ ++F+T + + ++KPF L ++V +N +L Sbjct: 71 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 127 >gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 232 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GYEV++ N+G A + VR E LL+ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L KPF L +L+ V L+ Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118 >gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 243 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+VV+ +G A D L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +AL G+E + +G A K +++ D+ MP MDG+E Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R DP+L V+F+T AVA ++KPF L ++ V LL Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRR 128 >gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1] gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1] Length = 224 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D++ +R + L K G+ V + G A + E L + DI+MP MD Sbjct: 1 MKSKILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L E D+ V+ +T + A + ++KPF +L+ V +L Sbjct: 61 GFQLVEEMKEFK-DIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKR 119 >gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905] gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905] Length = 238 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ + L L +AGY V + +G +K E +L+L D+++P++D Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ ++ + + ++ +T ++KPF R+++ V +L Sbjct: 61 GMEVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRR 120 >gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 234 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 234 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13] Length = 242 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D+ + L L +AGY+V +G +K EE F +++ D+++P+ D Sbjct: 1 MNKKILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + + ++ +T ++KPF R++V V +L Sbjct: 61 GIEVCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + NG A D E L + D+++P+MDG Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR V+F+T ++KPF L ++V + +L Sbjct: 69 VTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125 >gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D+ +RR L L GY VV+ ++G A E L++ D++MP++DG Sbjct: 10 TILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRETPDLIVLDVMMPKLDGYG 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + D+ ++ +T A VA + KPF ++L + LL + Sbjct: 70 VCLELRKQ-SDVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRRR 126 >gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|330998526|ref|ZP_08322347.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329568257|gb|EGG50073.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1341 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ + + K L Y V++ NG A ++++ L+++D++MP MDG L Sbjct: 1094 ILLVDDNTQLLEMMEKILATK-YRVLTAENGLEALEQLKASAVDLIVSDVMMPGMDGFAL 1152 Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL-TIK 121 R+ + V+ +T + D L+KPF L+ L ++ LL T + Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLHTYR 1212 Query: 122 N 122 N Sbjct: 1213 N 1213 >gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842] gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|332827076|gb|EGJ99861.1| hypothetical protein HMPREF9455_03734 [Dysgonomonas gadei ATCC BAA-286] Length = 1355 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +LL ED++++ + L K Y V++ +NG A D+V++ ++++D++MP MDG+EL Sbjct: 1108 VLLVEDNEELLTLIGNILSKH-YHVLTASNGVEALDRVKDNDIDIVISDVMMPRMDGLEL 1166 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 RR + + V+ +T + + +SKPF L+ L +N LT K Sbjct: 1167 CRRLKKDIETSHIPVILLTAKNSADDRIECYNAGADGYISKPFELKVLEARINNFLTNK 1225 >gi|320536674|ref|ZP_08036689.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320146496|gb|EFW38097.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 456 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 58/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R L AL GYEV + ++G D L++TD+ MPE+ Sbjct: 1 MKFSILIIDDEKNIREGLQMALEDEGYEVFTASDGKKGLDIAFSNDIDLVITDLKMPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR + P + V+ +TG V ++ L+KP L L V R L Sbjct: 61 GEEVLRRISSETPGVPVIVLTGHGTVETAVEAMRTGAYDFLTKPLDLDRLSLLVRRALQN 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae] Length = 253 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +DD +R L ++L GY V N+G A + V + L+ D++MP +DG+E Sbjct: 27 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 86 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 87 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRR 143 >gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120] gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ N+G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF ++LV + LL N Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRRSN 121 >gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD ++ L L K GY V S +G A K + L+L DI++P MDG + Sbjct: 5 KILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R + + V+ IT + KPF +++V + +L Sbjct: 65 VCREIRK-KSEKPVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRR 120 >gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +D+ D+ + L + GY + +G A + E L++ D+++P +DG Sbjct: 3 NEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDG 62 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ RR + ++ ++ +T + +SKPF R+LV + +L Sbjct: 63 FEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILR 122 Query: 120 IK 121 + Sbjct: 123 RR 124 >gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016] gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 237 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD +R + L G+ V NG A K+ EE L + DI+MP+MDG E Sbjct: 15 KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ D+ ++ +T + ++ L+KPF + +L+ + LL Sbjct: 75 FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRR 131 >gi|222054627|ref|YP_002536989.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221563916|gb|ACM19888.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 454 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 59/121 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +DD +RR L L + GYEV++ +G + E L++TD+ MP + Sbjct: 1 MTAKILLIDDDTSLRRVLEYNLQEEGYEVITAVDGETGLALFNEHSPPLVITDLKMPGIT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ E P V+ IT F A+ ++ ++KPF+ L V + L + Sbjct: 61 GFQVLSTIKERSPATLVIVITAFGAIDTAIEAMKLGAHDYITKPFNRDQLKLVVKKALEL 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 511 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + KIL+ +D+ D+ L L AGYE V +G A + V +EPF L++ DI MP M Sbjct: 1 MQKDKILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAQEPFDLIMLDIKMPRM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+E+ R + V+ +T + + D+ +SKPF D++ +V R + Sbjct: 61 DGLEVLSRLK--GDETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAIG 118 Query: 120 I 120 I Sbjct: 119 I 119 >gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125] gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +D+ + L L K G+ V+ +GA A ++V +E L+L DI++P DG Sbjct: 3 NKKILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNKDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 63 MEVCREVRKQF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6] gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ +D+ M R L L GYEVV +G A ++ +++ D+ +P MD Sbjct: 1 MSERILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGLPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E+ RR + ++ ++ ++ L KPF + +L+ + L Sbjct: 61 GLEVCRRIRG-WSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALR 118 >gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 248 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+M Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + RR + ++F+T A++ LSKPF ++L + +L Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 250 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 7/125 (5%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56 +IL+ ED++ +R L+ AL GYE+++ +G +A + ++ E PF L++ D+++ Sbjct: 20 RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P+++G+++ R + ++ ++ + L+KPF +R+LV Sbjct: 80 PQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 117 LLTIK 121 LL + Sbjct: 140 LLRRQ 144 >gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] Length = 747 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ + L GY+VV G A ++V L+L D++MP++DG Sbjct: 10 SGTILVVDDNPVNLGLVADHLELRGYQVVVALGGNEALERVAFARPDLVLLDVMMPDIDG 69 Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E RR D+ V+F+T V A +SKPF + +L+ V L Sbjct: 70 FETCRRLKAQADYKDIPVIFMTALTDVDSKVAGFAAGGVDYVSKPFQIEELLARVQTHLA 129 Query: 120 IK 121 ++ Sbjct: 130 LR 131 >gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916] Length = 280 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ +RR L+ L AGY V+ +G A + E L++ D+++P+MDG Sbjct: 34 KATILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLPKMDG 93 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + ++F++ A++ L KPF ++L + +L Sbjct: 94 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 151 >gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD ++ + + K G+EVV+ NG+ A + R E ++++ DI++P DG + Sbjct: 6 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R ++ ++ V+ ++ L KPF ++LV V +L Sbjct: 66 VCREIRKI-SNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRR 121 >gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 51/117 (43%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + + L +GY +G++A + + L++ D++MP MDG+ Sbjct: 3 KILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPFMDGMS 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + V+ +T + KPF R+LV V +L Sbjct: 63 CLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 119 >gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EV + NG A D E L + D+++P+MDG Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR V+F+T ++KPF L ++V + +L Sbjct: 69 VTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125 >gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++LL +D+ +R + L ++G+ V +N +D +++ L+++D++MP++D Sbjct: 1 MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G + ++ E L V+F+T + L KPF +LV + LL Sbjct: 61 GYQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLL 120 Query: 119 TIKN 122 T +N Sbjct: 121 TRRN 124 >gi|317121455|ref|YP_004101458.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591435|gb|ADU50731.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 326 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL +D+ + + L ++L +AG+EV +G A ++ L++ D+++PE+D Sbjct: 1 MGERILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGGIDLIILDLMLPEID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ + R + + ++ +T + KPF+ R+L+ + +L Sbjct: 61 GLTVCREVRK-TSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVLRR 119 >gi|116748266|ref|YP_844953.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Syntrophobacter fumaroxidans MPOB] gi|116697330|gb|ABK16518.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Syntrophobacter fumaroxidans MPOB] Length = 1139 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 58/109 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R + + L +AG+ V +GA A + + + + LL D+ MP MDG+E Sbjct: 191 RILVVDDELVVRDSIKEWLDEAGFAVDMAASGAEAVEMLGRQSYGLLFLDVKMPGMDGVE 250 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112 + + A E+ P+L + +T +A + ++ + KPF + L Sbjct: 251 VLKIAKEMHPELPAVMMTAYATIETAVEAMKVGAKDYIMKPFDIEALTE 299 >gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ +IL+ +D++ + + L K G++V ++G A D + + ++L++ D+++P + Sbjct: 1 MSEIRILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPVI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + + + D+ ++ +T + KPF R+LV V LL Sbjct: 61 DGWTVCKEVRK-KSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|311278811|ref|YP_003941042.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter cloacae SCF1] gi|308748006|gb|ADO47758.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter cloacae SCF1] Length = 461 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E +NG +A + + P ++L DI MPEM+GI+ Sbjct: 6 RILIVDDEDNVRRMLATAFSLQGHETHCASNGRTALEHFADTPPDVVLMDIRMPEMNGID 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + P + ++ +T +A V ++ + KPF L +L + R + ++ Sbjct: 66 TLKVMRAQQPRIPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRAMQMQ 123 >gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] Length = 1130 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ + L L GY V++ +G A + V+ +L+L DI+MPEM G E+ Sbjct: 723 LLVVDDEPVNLQILNNFLRLEGYRVLTAESGKQALELVQSHKPALILLDIMMPEMSGYEV 782 Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + +L +M ++ V L+KPF+ +L + L Sbjct: 783 CSQLRQQYTPLELPIMMLSALGQVKDRVKGFECGANDYLTKPFNKEELTARIKAHLQ 839 >gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + R L L GYEV +G +++ DI++P MDG+ Sbjct: 6 RILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLPGMDGVG 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E V+ +T A S L+KPF + +L+ + +L Sbjct: 66 VLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRR 122 >gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R L +L AG+EVV+ NG A V + L + D+++P+MDG Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGFT 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ V+F+T + ++KPF L ++V + +L Sbjct: 69 ITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125 >gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 245 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 53/120 (44%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY+ +GA A DK L++ DI MP MDG+ Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPRMDGL 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L V LL + Sbjct: 71 TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 130 >gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+M Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + RR + ++F+T A++ LSKPF ++L + +L Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ +R F+I L + +EV+ G A V+ E L+L DI++P+MD Sbjct: 1 MGARILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ + + P L V+ +T + KPF +LV + +L Sbjct: 61 GFQVCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRR 120 >gi|90418876|ref|ZP_01226787.1| response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336956|gb|EAS50661.1| response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 121 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 98/116 (84%), Positives = 109/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL KAL +AGYEVVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 KILLAEDDNDMRRFLAKALERAGYEVVSYDNGGSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPDLKVMFITGFAAVALNPDS APK+AK+LSKPFHLR+LV+EV R+L Sbjct: 63 LARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKILSKPFHLRELVDEVARMLE 118 >gi|320352850|ref|YP_004194189.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320121352|gb|ADW16898.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 357 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED +R L K LGK GY V + ++G A +R L+L DI+MP+MDG+EL Sbjct: 8 ILVVEDSPINQRLLCKLLGKEGYAVRTADHGQEALALLRTFRPDLILLDILMPQMDGLEL 67 Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R E D+ V+FI+ + ++KPFH +++ ++ L + Sbjct: 68 CRLLKVGEATRDIPVIFISSLDDTSDKLSGFEAGGVDYITKPFHPAEVLARISTHLKL 125 >gi|149010945|ref|ZP_01832250.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147764581|gb|EDK71511.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L L P+ +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD + + L GY V +C +GA A +E L+L D+++P MD Sbjct: 1 MSSRILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ ++ ++ +T + A + KPF R+LV V L Sbjct: 61 GFEVCAALRAE-SNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRG 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ + R + L K G+ V ++G A + V + FSL++ D+++P M G + Sbjct: 3 RILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSGED 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + ++ ++ ++ +T A + KPF +LV V+ +L Sbjct: 63 VCKQLRRQGNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLRR 119 >gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 244 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GYEVV+ +G A R L++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 240 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++ILL ED+ +R + L + Y V + +G A ++ + F L++ D+++P + G Sbjct: 8 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R + + D+ ++ +T V L KPF R+LV V LL Sbjct: 68 ERVCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR 125 >gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ ++ L L K GY+ + +G A + + L+L DI++P+MD Sbjct: 1 MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + R+ + ++ +T ++KPF R+L+ V L Sbjct: 61 GFTVCRKLRQSIS-TPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRR 119 >gi|260460614|ref|ZP_05808865.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] gi|319781598|ref|YP_004141074.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259033719|gb|EEW34979.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] gi|317167486|gb|ADV11024.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 120 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 97/116 (83%), Positives = 109/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDDDMRRFL+KAL +AGY+V +NGASAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDDDMRRFLVKALERAGYQVSDFDNGASAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATE+DPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEV ++L Sbjct: 63 LARRATEIDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVEKMLQ 118 >gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++ + + L GY + NG A + +EE L+L D+++P MDG Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + + + ++ IT ++KPF +R++V V +L Sbjct: 64 EVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123 Query: 121 K 121 + Sbjct: 124 R 124 >gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|328542479|ref|YP_004302588.1| Response regulator receiver domain protein (CheY-like) [polymorphum gilvum SL003B-26A1] gi|326412226|gb|ADZ69289.1| Response regulator receiver domain protein (CheY-like) [Polymorphum gilvum SL003B-26A1] Length = 122 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 95/116 (81%), Positives = 108/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMRRFL KAL AG++VVS +NG SAY+++REEPF+LLLTDIVMPEMDGIE Sbjct: 6 RILLAEDDNDMRRFLAKALENAGHDVVSFDNGRSAYERLREEPFALLLTDIVMPEMDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRAT+LDPDLKVMFITGFAAVALNPDSNAPK+AKVLSKPFHL+DLV EV R+L Sbjct: 66 LARRATQLDPDLKVMFITGFAAVALNPDSNAPKDAKVLSKPFHLKDLVQEVERMLA 121 >gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIMLPGKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|322420858|ref|YP_004200081.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320127245|gb|ADW14805.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 457 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D++ +R L L GY V +G A +E L+L DI MP+MD Sbjct: 1 MTETILIVDDEEGIRSSLAGILEDEGYRTVCAADGTEALALCNKELPGLVLLDIWMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE +R E P L V+ ++G + S + KP L +V V L++ Sbjct: 61 GIETLKRLKEQHPGLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALSM 120 >gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1] gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1] gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101] Length = 253 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +RR L L GY+VV+ +G A + R L++ D++MP++DG Sbjct: 13 KETILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVMMPKLDG 72 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 73 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130 >gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcus oceani ATCC 19707] gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ +R L AL + GY + +G A+ ++ E L+L D ++P + Sbjct: 1 MVATILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLPGIS 60 Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G++LARR +L V+ +T ++KPF +L+ + +L Sbjct: 61 GVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|254413172|ref|ZP_05026943.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179792|gb|EDX74785.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 467 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%) Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 M++K +L+ ED+ FL L K+G++V+ +G +A +V L+L D++ Sbjct: 1 MDKKAAQGNLLIVEDNPTNLSFLFNYLTKSGFKVLVATDGKTAIQRVEAAQPDLILLDVM 60 Query: 56 MPEMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113 MP MDG E+ +R D+ V+F+T + ++KP ++V+ Sbjct: 61 MPGMDGFEVCKRLKSSPSMRDIPVIFMTALSDTLNKVHGFEIGAVDYITKPIQPEEVVSR 120 Query: 114 VNRLLTIKN 122 + LT++N Sbjct: 121 IQTHLTLRN 129 >gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis serovar chinensis CT-43] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|13472672|ref|NP_104239.1| chemotaxis response regulator [Mesorhizobium loti MAFF303099] gi|14023419|dbj|BAB50025.1| chemotaxis response regulator [Mesorhizobium loti MAFF303099] Length = 120 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 97/115 (84%), Positives = 109/115 (94%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDDDDMRRFL+KAL +AGY+V +NGASAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDDDMRRFLVKALERAGYQVSDFDNGASAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 LARRATE+DPDLKVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEV ++L Sbjct: 63 LARRATEIDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVEKML 117 >gi|313884444|ref|ZP_07818205.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620228|gb|EFR31656.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 273 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 58/118 (49%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ + L L +AGY+V ++G AY+ + + + ++ D+++P MDG+ Sbjct: 2 EHILIVDDEPSILTLLAYNLQQAGYQVDQADDGLLAYEMIEQNKYDFIILDVMLPGMDGM 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ R+ + + ++ +T ++KPF R+++ + +L Sbjct: 62 DICRKVRKKGSQVPILMLTAKDEEYDKVVGLELGADDYMTKPFSPREVLARIKAILRR 119 >gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP 101886] gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP 101886] Length = 240 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +DD ++R L + L KAGY V + NG K+ + L+L DI++P DG Sbjct: 4 QKRILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQYPDLILLDIMLPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + + D + ++ +T + ++KPF R LV + LL Sbjct: 64 FTLCKYVRQ-DSSVPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLRR 121 >gi|114707568|ref|ZP_01440464.1| probable two-component response regulator protein [Fulvimarina pelagi HTCC2506] gi|114537127|gb|EAU40255.1| probable two-component response regulator protein [Fulvimarina pelagi HTCC2506] Length = 121 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 97/116 (83%), Positives = 108/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL KAL +AGY VVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 KILLAEDDNDMRRFLAKALERAGYNVVSFDNGGSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPDLKVMFITGFAAVALNPDS APK+AK+LSKPFHLR+LV+EV R+L Sbjct: 63 LARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKILSKPFHLRELVDEVGRMLE 118 >gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + L + G+EV+ +G + D R E L++ DI++P MDG+ Sbjct: 3 KILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLPGMDGLS 62 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R + + ++ ++ ++KPF R+L+ V L + Sbjct: 63 VCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRRQ 122 >gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD ++ + + K G+EVV+ NG+ A + R E ++++ DI++P DG + Sbjct: 8 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R ++ ++ V+ ++ L KPF ++LV V +L Sbjct: 68 VCREIRKI-SNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRR 123 >gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL J1-175] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ N+G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T +A ++KPF +L+ + LL N Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+ Sbjct: 2 KKILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+AR + D+ ++ +T + ++KPF R+LV V L Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|302037343|ref|YP_003797665.1| sigma-54 dependent transcriptional regulator [Candidatus Nitrospira defluvii] gi|300605407|emb|CBK41740.1| Sigma-54 dependent transcriptional regulator [Candidatus Nitrospira defluvii] Length = 448 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+A+DD + L GYEV++ ++G SA + + LL+ DI MP + Sbjct: 1 MKPIVLVADDDPSILEILKLGFRTKGYEVITASDGKSAIQAIEQNRPDLLVLDIEMPHLT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ R + P L V+ +T ++L ++ + ++KPF + L+ + + L Sbjct: 61 GIEVLRHLRKDWPTLPVVIMTAHGTISLAVEAMKEGATEFITKPFEMEQLLLVIQKALER 120 Query: 121 K 121 + Sbjct: 121 E 121 >gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 14 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 73 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 74 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 132 >gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + KIL+ +D++ + + L K GYEV++ +G A +E F L++ D+++P+ Sbjct: 7 MKKLFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 66 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G E+ + E ++ ++ +T + + L+KPF +R+LV V L+ Sbjct: 67 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 125 Query: 119 TI 120 Sbjct: 126 RR 127 >gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 230 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ +KIL+ ED +D L L +GYEVV+ +G A D+ R+E L+L D+++P + Sbjct: 1 MSVEKILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLMLPGI 60 Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG+E+ RR + + V+ +T + KPF R+LV V + Sbjct: 61 DGLEVCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAV 120 Query: 118 LTI 120 L Sbjct: 121 LRR 123 >gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 236 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ + L L K G++V +G A ++V+E L+L DI++P D Sbjct: 1 MDKHILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + DL ++ +T + + KPF R+L+ V L Sbjct: 61 GMEVCREVRKQY-DLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRR 119 Query: 121 KN 122 + Sbjct: 120 QQ 121 >gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ ++R L +L +G+ V S G A D V E L++ D+++P++DG + Sbjct: 17 LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPDLDGFTV 76 Query: 65 ARRATELDP------DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 RR + + V+F+T A ++KPF L +L+ + +L Sbjct: 77 VRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAIL 136 Query: 119 TI 120 Sbjct: 137 RR 138 >gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 239 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 55/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG++VV+ NG A E L + D+++P+MDG Sbjct: 12 RLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPDMDGFT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR V+F+T ++KPF L ++V + +L Sbjct: 72 VTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128 >gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CNEVA-9066] gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055] gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Western North America USA6153] gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger B] gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Vollum] gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Australia 94] gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 239 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 230 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD +R L L K GY++ +G A R SL++ D+++P MDG Sbjct: 4 HKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLPGMDGF 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL R + ++ +T ++ + LSKPF +++L+ + LL Sbjct: 64 ELCRLIRAE-SSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQ 122 >gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 53/105 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + L + L G+ V + +G A RE+P L++ DI+MP MDG+E Sbjct: 3 RILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMPGMDGME 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 + RR DP+L V+F+T A A + KPF Sbjct: 63 VLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFE 107 >gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 52/120 (43%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY +GA A DK L++ DI MP MDG+ Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDIQMPRMDGL 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L + LL + Sbjct: 71 TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130 >gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 229 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD+ + L + L GY+V + NGA + L++ D++MP++D Sbjct: 1 MRSAILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR E + V+ +T V L KPF L +L+ V LL Sbjct: 61 GFEVCRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRR 120 Query: 121 KN 122 K+ Sbjct: 121 KD 122 >gi|168483613|ref|ZP_02708565.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|172042917|gb|EDT50963.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|332205113|gb|EGJ19176.1| response regulator [Streptococcus pneumoniae GA47368] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L L P+ +FIT + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLNLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|187918615|ref|YP_001884180.1| sigma-54-dependent transcriptional activator [Borrelia hermsii DAH] gi|119861463|gb|AAX17258.1| sigma-54-dependent transcriptional activator [Borrelia hermsii DAH] Length = 451 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+A+D+ ++R + L + GY V + ++G A + + E +++D+ MP++ Sbjct: 1 MS-KLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIENEKIDAIISDLRMPQIS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + + +P++ + +T V D+ L+KP L L+ + R L Sbjct: 60 GEELLKIVKDKNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALNG 119 Query: 121 KN 122 KN Sbjct: 120 KN 121 >gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 235 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ MR L L + G+ V +G A ++VR E L+L DI++P +DG Sbjct: 2 RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGWA 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D+ V+ +T V L KPF +L+ + +L Sbjct: 62 VCRILRRE-SDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117 >gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 252 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +RR L L GY VV+ +G A + EP L++ D++MP++DG Sbjct: 11 KETILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVMMPKLDG 70 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 71 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 128 >gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 51/118 (43%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY + +G A DK L++ DI MP MDG+ Sbjct: 8 QRILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDIQMPRMDGL 67 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ARR ++ +T V L KPF L +L V LL Sbjct: 68 TAARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 125 >gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1] gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 248 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ +DD +R L + L G+ V + ++G+ ++ E FSL++ D+++P D Sbjct: 12 LTHRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGED 71 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI + +R E + D+ ++ +T + + L KPF+ ++L+ + +L Sbjct: 72 GIAICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 131 >gi|116749523|ref|YP_846210.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698587|gb|ABK17775.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 462 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ MR FL L K GY+V G A D ++ E + L++TDI M ++G++ Sbjct: 7 KILVVDDEASMREFLEIMLQKQGYQVTCAETGKEALDFIQNETYDLVITDIRMKPINGLD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ++ + P V+ I+ +A+ + L KPF++ ++ + L K Sbjct: 67 VLKQCKVISPSTVVIIISAYASAETAVAAMQEGAYDYLPKPFNVDEIRTVIENALRSK 124 >gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 274 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++ILL ED+ + + L KAG++V +G +A + L++ D ++P +DG Sbjct: 31 NRRILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRMLPGLDG 90 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ RR + + V+ +T ++KPF R+LV V +L Sbjct: 91 VEVCRRLRQTMS-VPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRR 148 >gi|148262168|ref|YP_001228874.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146395668|gb|ABQ24301.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 452 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 59/119 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GYEV + ++G + SL++TD+ M MD Sbjct: 1 MKAKILVIDDDSSLRRVLEYNLQEEGYEVQAASSGEEGLYLFGQSRPSLVITDMKMSGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+ + + E P+ V+ IT F V + ++ ++KPF+ L V + L Sbjct: 61 GLMVLKSVKERSPETLVIIITAFGTVDVAVEAMKAGAYDYITKPFNRDALKLTVRKALQ 119 >gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 225 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ EDD+ + R L +AL GY V S G + RE L++ D ++P MD Sbjct: 1 MKERILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ +R L + ++ +T + ++KPF L +L+ + LL Sbjct: 61 GLEVCQRLRTLC-NAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRR 119 >gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus 16] gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus 16] Length = 1111 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ R L L GY V + +G A++K+ E L+L DI+MP M G ++ Sbjct: 707 LLVVDDEPVNLRVLDSFLRLEGYRVQTAKDGLEAFEKLEAEKPELVLLDIMMPGMSGYQV 766 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + + L V+ +T LSKPF+ ++L + LT Sbjct: 767 CEKLRQDYDHAQLPVIMLTALNQADDRLRGFEAGANDYLSKPFNKQELAARIRAHLT 823 >gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella avium 197N] gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella avium 197N] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ ED+ ++ + L AG++V+ + A +R E L+L D ++P M Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGMS 60 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+ LAR+ E ++ V+ +T A D ++KPF ++L+ + +L Sbjct: 61 GLSLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120 Query: 119 TIK 121 + Sbjct: 121 RRR 123 >gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 238 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AEDD +R L+ L GY V++ +G A E F L L DI+MP +G + Sbjct: 5 RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R DP L ++ +T ++KPF + +L + +L Sbjct: 65 VCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRR 121 >gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 220 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 249 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 54/120 (45%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q +LLAEDD +R L +AL GYEV + +G A P +LL D++MP +D Sbjct: 1 MTQTVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTPPDVLLLDVMMPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R ++ +T A + KPF + ++ + LL Sbjct: 61 GLQVCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 120 >gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032] gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + YE+ NG A K + + L+L D++MP DGIE Sbjct: 8 KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLMMPGTDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + ++ +T A + KPF R++V V LL + Sbjct: 68 VCNQIRDKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSS 125 >gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ IL+ +D+ + + L+ L AGY+V NG A + E L++ D+++P+M Sbjct: 1 MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + RR + ++F+T A++ LSKPF ++L + +L Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 57/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R L + L G+ V + +G + VR+ P L++ D+++P +D Sbjct: 1 MSPRILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R +D +L V+ +T ++KPF L V L Sbjct: 61 GLEVLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRR 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ ED++ + L +G++V N+G + +K +E F L++ D+++P +D Sbjct: 1 MSKRILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLMLPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ R + ++ ++ ++KPF +LV V L+ Sbjct: 61 GFEICREVRSQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSR 119 >gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L AL +AG+ V + +G A+ K+ E+ LLL D ++P Sbjct: 1 MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLPGTS 60 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIELARR + D L ++ ++ + ++KPF R+L++ + LL Sbjct: 61 GIELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALL 120 Query: 119 TIK 121 + Sbjct: 121 RRR 123 >gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + Y + NG A K E + L+L D++MP DGIE Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ E ++ +T A + KPF R++V V LL Sbjct: 68 VCRQVREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 >gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 244 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 52/120 (43%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY +GA A +K L++ DI MP MDG+ Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGL 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L + LL + Sbjct: 71 TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130 >gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 255 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +KIL+ +D+ +RR L L AGY+VV ++G A +E L++ D+++P++D Sbjct: 12 LKEKILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLD 71 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + R +L D+ ++ ++ +A L KPF ++L + +L Sbjct: 72 GYGVCRELRKL-SDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRR 130 >gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 56/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++ L + L + GYEV +NG + + +E + LL+ D ++P+ G++ Sbjct: 2 KILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + V+F+T + L KPF LR+L+ V LL Sbjct: 62 ICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRR 118 >gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241] gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L] gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1] gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str. CNEVA-9066] gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055] gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str. Western North America USA6153] gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger B] gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str. Vollum] gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str. Australia 94] gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI] gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241] gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L] gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1] gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar anthracis str. CI] gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|332881804|ref|ZP_08449452.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680443|gb|EGJ53392.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1341 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ + + K L Y V++ NG A +++ L+++D++MP MDG L Sbjct: 1094 ILLVDDNMQLLEMMEKILATK-YRVLTAENGLEALKQLKAHAVDLIVSDVMMPGMDGFAL 1152 Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 R+ + V+ +T + D L+KPF L+ L ++ LL Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLR 1209 >gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ KIL+ ED D R L L AG++V + +GAS ++L D++MP M Sbjct: 1 MSAHKILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLMMPGM 60 Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG+E+ R+ + V+ +T + KPF R+LV + + Sbjct: 61 DGLEVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAV 120 Query: 118 LTI 120 L Sbjct: 121 LRR 123 >gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+Q+IL+ ED+ D+R L L + G+ V+ +G A R+ L+L D++MP D Sbjct: 1 MSQQILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGPD 60 Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E+ R + V+ +T + + KPF +R+L+ + +L Sbjct: 61 GFEICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032] gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + IL+ +D+ DM + L + G+ +++ NNG A ++ +EP L++ DI+MP+ Sbjct: 1 MKEQMHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPD 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG E+ +R + + ++F+T + + KPF LR+L + L Sbjct: 61 MDGFEVCQRIRQ-TSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTL 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|42527474|ref|NP_972572.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola ATCC 35405] gi|41818059|gb|AAS12483.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola ATCC 35405] Length = 473 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R L AL GYEV++ +NG + D ++ L++TD+ MPE+ Sbjct: 1 MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEVDLVITDLKMPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ R P + V+ +TG V ++ L+KP L L V R L Sbjct: 61 GEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRALQN 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|297568936|ref|YP_003690280.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924851|gb|ADH85661.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 467 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 65/117 (55%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ MR FL L + GY V + G +A + + E + LL++DI MP +G+ Sbjct: 2 KRILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL RA E+ P+L V+ +T FA+ + ++KPF + ++ + V L+ Sbjct: 62 ELLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALS 118 >gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1] gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L +AGY V++ ++G D EE L++ D+++P++D Sbjct: 1 MSKKILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + + ++ +T ++KPF R+++ V +L Sbjct: 61 GIEVCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRR 120 >gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 52/117 (44%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R + + L AGY +G++A ++ F L++ D++MP MDG+ Sbjct: 3 KILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPFMDGMT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + V+ +T + KPF R+LV V +L Sbjct: 63 CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNR 119 >gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 237 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ +RR L L K GY+V + +G A D ++ L++ D++MP++DG + Sbjct: 8 ILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQRPDLIILDVMMPKLDGYGV 67 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + ++ +T + V + KPF L++L + V +L Sbjct: 68 CQAVRKA-SRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRR 122 >gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ EDD+ + + L K L GY V +G +A + RE L++ D+++P M Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ +R + ++ +T LSKPF++ +L+ + +L Sbjct: 61 GLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRR 120 Query: 121 KN 122 + Sbjct: 121 TH 122 >gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ IL+ +D+ + + L+ L AGY+V NG A + E L++ D+++P+M Sbjct: 1 MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + RR + ++F+T A++ LSKPF ++L + +L Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+AEDD D+ L L AG++V+S +NG AYD ++ E L + DI+MPEM+ Sbjct: 1 MSYKILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPEMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL +R + + ++F++ A + ++KPF+ ++V V L Sbjct: 61 GFELTKRVR-ITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRR 119 Query: 121 K 121 K Sbjct: 120 K 120 >gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6] gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L L P+ +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLIGEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1] gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1] Length = 238 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M+Q K+L+ +D+D +R+ L L + Y + +G SA + + +L D++MP Sbjct: 1 MDQDVKVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDGIE+ + + V+ +T A + KPF R++V V LL Sbjct: 61 MDGIEVCKELRQKKS-TPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALL 119 Query: 119 TIKN 122 + Sbjct: 120 RRSS 123 >gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2] gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L +AGYEV++ +G D E L++ D+++P++D Sbjct: 1 MDKKILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++V V +L Sbjct: 61 GIEVCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family protein [Atopobium vaginae DSM 15829] gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL ED+ +R + L + GY V S +G SA ++ + F L++ D+++P++ G Sbjct: 6 KRILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLMLPKLSGE 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R E ++ ++ +T V L KPF R+LV V LL + Sbjct: 66 RVCRAVRE-TSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAH 124 >gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ + RFL GYEV +G S + E + L+L DI++P MD Sbjct: 1 MKEKILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ ++ E + D+ V+ +T V ++KPF + +L V L Sbjct: 61 GYEVLKKIRE-NSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRK 119 Query: 121 KN 122 +N Sbjct: 120 RN 121 >gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens TA208] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GY+V +G A + V E L+L DI++P D Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 Query: 121 K 121 + Sbjct: 120 Q 120 >gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D +R+ L + L + GY V++ +G SA R E L+L DI+MP MD Sbjct: 1 MSKTILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + R+ + V+ IT + KPF +R+L + +L Sbjct: 61 GYQFLRQFRQER-QTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRR 119 >gi|225857948|ref|YP_002739458.1| response regulator SaeR [Streptococcus pneumoniae 70585] gi|225720881|gb|ACO16735.1| response regulator SaeR [Streptococcus pneumoniae 70585] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L L P+ +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYLLPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT] gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD+++ + L +GY C +G SA E L+L D+++P MD Sbjct: 4 MLGKILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVMLPHMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++ + + + V+ +T + + KPF ++L+ + +L Sbjct: 64 GIDVLKWIRKEC-ETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122 Query: 121 KN 122 N Sbjct: 123 YN 124 >gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 234 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ +R L AGY V+ G +E L++ D+++P MD Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R E D+ ++ +T + L+KPF R+LV V +L Sbjct: 61 GMEITARLRE-KSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 249 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + + L +AGY V +G +A + L++ D+++P MDG+E Sbjct: 22 RVLVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLMLPGMDGLE 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR P + V+ +T ++KPF R+LV V +L Sbjct: 82 VCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 137 >gi|119953537|ref|YP_945747.1| acetoacetate metabolism regulatory protein AtoC [Borrelia turicatae 91E135] gi|119862308|gb|AAX18076.1| acetoacetate metabolism regulatory protein AtoC [Borrelia turicatae 91E135] Length = 456 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+A+D+ ++R + L + GY V + ++G A + ++ E +++D+ MP++ Sbjct: 1 MS-KLLVADDEKNIREGIATYLEEEGYFVFTASDGKEALETIKNEKIDAIISDLRMPQIS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + + +P++ + +T V D+ L+KP L L+ + R L Sbjct: 60 GEELLKIVKDKNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALNG 119 Query: 121 KN 122 KN Sbjct: 120 KN 121 >gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++ + + L GY + NG A + +EE L+L D+++P MDG Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + + + ++ IT ++KPF +R++V V +L Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123 Query: 121 K 121 + Sbjct: 124 R 124 >gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KVRE L+L D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+AR + D+ ++ +T + ++KPF R+LV V L Sbjct: 62 EVAREVRKTF-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KILL +DD ++ + L + L G++V +G + E+ F+L+L D++MP+++G Sbjct: 2 HKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R + D V+ +T + L+KPF R+L+ V +L Sbjct: 62 AMLARLRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRR 118 >gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D++ + R L L K GYE +G +A E + +L DI++P++D Sbjct: 1 MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +M ++ + ++KPF R+L+ + +L Sbjct: 61 GIEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRR 120 >gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++ + + L GY + NG A + +EE L+L D+++P MDG Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + + + ++ IT ++KPF +R++V V +L Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123 Query: 121 K 121 + Sbjct: 124 R 124 >gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q ++L+ +D+ +MR L L K G+ V +NG+ R + +++ D++MP+M Sbjct: 1 MGQLRVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPDM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG ++ ++ E+ P + ++ +T V + KP +L+ + LL Sbjct: 61 DGWQVCKKMREIAP-VPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLR 119 Query: 120 IKN 122 + Sbjct: 120 RSS 122 >gi|189425842|ref|YP_001953019.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189422101|gb|ACD96499.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 480 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 65/115 (56%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +IL+A+D++ MR L KAL K GY V +G A +VRE+ + L++ DI MP M G+ Sbjct: 4 HRILVADDEESMRWVLSKALRKKGYSVDLAADGNQALRQVREQSYDLVIVDIKMPGMSGL 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E +A EL PDL V+ +T A++ ++ ++KPF L + + ++ Sbjct: 64 EFLDKARELRPDLLVVVMTAEASMKNAVEAMKRGAYDYITKPFDLEVIDAIIEKV 118 >gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 248 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +RR L L GY+VV+ ++G A + R+ L++ D++MP++DG Sbjct: 8 KETILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVMMPKLDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|328952068|ref|YP_004369402.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328452392|gb|AEB08221.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 455 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D+ + + L AGYEV + ++G +A + R L++TD+ MP M GIE Sbjct: 3 TILVVDDEKNYLLVMETLLAGAGYEVFTADSGETALELTRRNDLDLVVTDMKMPRMSGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 L + ++ PDL V+ +T + V ++ + KPF +++ + + L +++ Sbjct: 63 LLEQLKQVYPDLPVIMMTAYGTVEKAVEAMKKGAFDYILKPFKNEEILLTIAKALELRH 121 >gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 238 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ ++ L L + GYEV +G A D RE ++L D+++P MD Sbjct: 1 MAEKILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL RR + + V+ +T ++KPF +R+L+ V +L Sbjct: 61 GFELCRRLRQEM-NTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRR 119 >gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN +KIL+ +D+ ++ + L K G++VV+ NG A +EE L++ D+++P Sbjct: 1 MNDIKKILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLMLPR 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G E+ + + D+ ++ +T + A L+KPF +R+LV V L+ Sbjct: 61 ISGEEICNKIRAV-SDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALI 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+AED+ DM R + + L K GY V SC++G A + + + DI+MP +G E Sbjct: 2 RILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + +R L + V+F+T ++A L KPF +L+ + R+LT K Sbjct: 62 VLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARI-RVLTRK 118 >gi|161524068|ref|YP_001579080.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160341497|gb|ABX14583.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 305 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D Sbjct: 65 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 124 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ R+ D+ V+ +T A L KPF+ R+L+ V +L Sbjct: 125 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 184 Query: 121 K 121 + Sbjct: 185 R 185 >gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++++ L L K GY V +G A V +P LL+ DI+MP+MDG E+ Sbjct: 6 ILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR E ++ ++F++ + ++KPF +LV VN L Sbjct: 66 TRRIRETH-NMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQLRR 120 >gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + YE+ NG A K + + L+L D++MP DGIE Sbjct: 8 KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLMMPGTDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + ++ +T A + KPF R++V V LL + Sbjct: 68 VCNQIRDKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSS 125 >gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA [Mycobacterium intracellulare ATCC 13950] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126] gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEVV+ +G A ++ E L++ D+++PE+DG+ Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+A+ + ++ ++ + ++KPF R+L+ + L Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 >gi|325473731|gb|EGC76920.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola F0402] Length = 473 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R L AL GYEV++ +NG + D ++ L++TD+ MPE+ Sbjct: 1 MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEVDLVITDLKMPEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ R P + V+ +TG V ++ L+KP L L V R L Sbjct: 61 GEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRALQN 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 276 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ ED++ + + +AL + G+ V ++G D R F L+ D+++P +DG E Sbjct: 2 HVLVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVMLPGLDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + ++ +T AVA L KPF L +L V L Sbjct: 62 ICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRAL 115 >gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)] Length = 248 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +IL+ +DD +R L + L G+ V + ++G+ ++ E FSL++ D+++P D Sbjct: 12 LTHRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGED 71 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI + +R E + D+ ++ +T + + L KPF+ ++L+ + +L Sbjct: 72 GISICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 131 >gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 224 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 51/117 (43%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R + L G+++ NG A + + L++ DI+MPE+DG + Sbjct: 3 RILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIMMPEIDGWQ 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + D+ ++ +T L KPF +LV V LL Sbjct: 63 LCHNIRKYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRR 119 >gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD Sbjct: 1 MNNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ R+ E ++ ++ ++ + L+KPF+ +L V L+ Sbjct: 61 GIEVCRKVRESL-NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119 >gi|39998006|ref|NP_953957.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39984951|gb|AAR36307.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298506947|gb|ADI85670.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 457 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + KIL+ +D+ +R L + L K GY+VVS NG A VREE L+L DI +P + Sbjct: 1 MRKTKILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQPDLVLLDIQLPGI 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E + E D ++ V+ +T A+ + ++KPF+L ++ + + L Sbjct: 61 SGLEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMSIVIRKALE 120 >gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 244 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ IL+ +DD+++ + L K YE +G A E L+L D+++P M Sbjct: 1 MSKNNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG ++ + + ++ ++ V + KPF +LV V LL Sbjct: 61 DGYQVCTEIRK-TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++ + + L GY + NG A + +EE L+L D+++P MDG Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + + + ++ IT ++KPF +R+++ V +L Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRR 123 Query: 121 K 121 + Sbjct: 124 R 124 >gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 257 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ +D+ +RR L L +GY VV +G A + E L++ D++MP++DG Sbjct: 12 TATLLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMPKLDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR + ++F++ A+A LSKPF ++L ++R+L Sbjct: 72 FAVCRRLRAE-SAVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRIL 127 >gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 249 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + + L +AGY V ++G +A + L++ D+++P MDG+E Sbjct: 16 RILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLMLPGMDGLE 75 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR P + V+ +T ++KPF R+LV V +L Sbjct: 76 VCRRMRGHGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 131 >gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8] gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8] gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62] gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+AR + D+ ++ +T + ++KPF R+LV V L Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] Length = 1389 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + ++L+A+D+ DMR +L + L AGY+V +G A R L+++D++MP +DG Sbjct: 639 SARVLVADDNADMREYLARLLTAAGYQVTEVTDGVEALAAARRRTPDLVVSDVMMPRLDG 698 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 +EL R + V+ ++ A + + L KPF +L+ V Sbjct: 699 LELVSRLRADPRTASVPVVLLSARAGQEASIEGLRAGADDYLVKPFAAAELLARVRA 755 >gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD + + LG+AG+ V +G A + L++ D+++P MDG+E Sbjct: 9 RVLVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLMLPGMDGLE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R P + V+ +T ++KPF R+LV V +L Sbjct: 69 VCRALRGRGP-VPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124 >gi|154493674|ref|ZP_02032994.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184] gi|154086884|gb|EDN85929.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184] Length = 1348 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q +LLA+D+ ++ ++L + L Y VV NG A + E ++++DI+MPEM+G Sbjct: 1096 KQTVLLADDNQEVLQYLEQQLS-LDYIVVKAFNGKEALAMIEESYPHIVISDIMMPEMNG 1154 Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +EL +R E + V+ +T + ++ + + KPF + L + LL+ Sbjct: 1155 LELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNLLS 1214 Query: 120 IK 121 ++ Sbjct: 1215 LR 1216 >gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124] gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEVV+ +G A ++ E L++ D+++PE+DG+ Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+A+ + ++ ++ + ++KPF R+L+ + L Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 >gi|329961484|ref|ZP_08299565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531696|gb|EGF58525.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1361 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ ED+ D+R++L + LGK+ Y + NG A + ++E+ L+LTD++MP MDG+ Sbjct: 1108 ESILIVEDNADIRQYLSRELGKS-YRTLEAENGEEALNILKEQEIDLILTDVMMPVMDGL 1166 Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +L + + + V+ ++ + + + KPF + + ++ L Sbjct: 1167 KLCKHIKQNLYTCHIPVIMLSAKTDLKEQIEGLQMGADDYIPKPFSMALVTTKIRNLFRT 1226 Query: 121 KN 122 ++ Sbjct: 1227 RH 1228 >gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|95929326|ref|ZP_01312069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95134442|gb|EAT16098.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 449 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 57/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL +DD MRR + L +AGY+V++ +G A R +L++TD+ M M Sbjct: 1 MSESVLLVDDDASMRRVIEFTLQEAGYQVLTAASGEEALPLFRHHQPALVVTDVRMEGMS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ + P V+ IT ++ V + L+KPF L V R Sbjct: 61 GYQVLEKVLAESPATLVIIITAYSTVEQAVGAMKSGAYDYLTKPFSGEQLRLAVARAFEY 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|270339712|ref|ZP_06005766.2| two component system sensor histidine kinase [Prevotella bergensis DSM 17361] gi|270334042|gb|EFA44828.1| two component system sensor histidine kinase [Prevotella bergensis DSM 17361] Length = 1372 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ ED+ D+RR+L+ AL Y VV +NG A +K+ E SL+LTD++MPEMDG Sbjct: 1122 SATLLIVEDNTDIRRYLVDALCDQ-YHVVEASNGKEAMEKLDAETISLVLTDVMMPEMDG 1180 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL +R + V+ ++ D ++KPF + L ++ L Sbjct: 1181 FELCKRIKRHIQTCHIPVIILSAKVETREQLDGLLIGADDYITKPFSISILKAKIRNTLR 1240 Query: 120 IK 121 I+ Sbjct: 1241 IR 1242 >gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 290 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 IL+ +D+ + R L+ L AGY V+ +G A + E LL+ D+++P+MDG Sbjct: 25 KATILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPKMDG 84 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + ++F++ A++ + KPF ++L + +L Sbjct: 85 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142 >gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ +L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM Sbjct: 1 MSKYNVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+ + + + D+ ++F+T + + KPF +L+ + +L Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + K GY V + NG A +E + L+L DI+MP+++ Sbjct: 1 MEEKILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIMMPKLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E R + D+ V+ +T + KPF +R+L+ V +L Sbjct: 61 GFEALREIRK-TSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRR 119 >gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GYEVV +G A ++V E L++ D+++P++D Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLPKID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A+R + ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 Query: 121 K 121 + Sbjct: 120 Q 120 >gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +D+ ++R L +L AG+EV + +G SA VR+ L++ D+++P+MDG Sbjct: 8 RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGFT 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E V+F+T ++KPF L ++V + +L Sbjct: 68 VTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRR 124 >gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 61/121 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KI++ EDD + R L LG GY V S ++G + + E L+L D+++P + Sbjct: 1 MAEKIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLG 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + DP+L ++ ++ L KPF L++L+ ++ LL Sbjct: 61 GLEVVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRR 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|42523020|ref|NP_968400.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100] gi|39575225|emb|CAE79393.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100] Length = 468 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D++ +R FL L K GYE+ +G A D + ++ F ++++D+ MP + Sbjct: 1 MKSRILVVDDEESIREFLEIMLKKEGYEITLAEDGQKAKDLLAKKTFDMIISDLQMPHVT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIEL + E PD M IT F ++ L+KPF + ++ + L Sbjct: 61 GIELLKHVKESYPDTVFMLITAFGTTETAVEAMKMGAYDYLTKPFKIDEVRLNIQNALRS 120 Query: 121 KN 122 +N Sbjct: 121 RN 122 >gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 1/113 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + + L GYEV + +GASA + L+L D+++P MDGIE Sbjct: 9 RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLMLPGMDGIE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 + RR + ++ +T A + L+KPF +LV + Sbjct: 69 VCRRLRRE-SGVPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKA 120 >gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + + L K GY+V + +G A +V E L+L D+++P++D Sbjct: 1 MAKKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+AR+ + D+ ++ +T + ++KPF R+LV V L Sbjct: 61 GLEVARQVRKSH-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRR 119 Query: 121 K 121 + Sbjct: 120 Q 120 >gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1343 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ ED+ D+R++L + LG + Y +++ NG A V+E+ L+LTD++MP MDG Sbjct: 1096 KENILIVEDNTDIRQYLCEELGNS-YHILTAENGEEALSIVKEQEIDLILTDVMMPVMDG 1154 Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++L ++ + + ++ ++ + + + KPF + +V ++ L Sbjct: 1155 LQLCKQIKQNLRTCHIPIIILSAKTDLKEQLEGLQVGADDYIPKPFSMAVIVAKIRNLFR 1214 Query: 120 IK 121 + Sbjct: 1215 TR 1216 >gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KIL+A+D+ + L L +AG+ V +G A + V + L++ D +MP M Sbjct: 2 MNAKILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMS 61 Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIE+ R R+ DL V+ ++ ++KPF R+LV+ V LL Sbjct: 62 GIEVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALL 121 Query: 119 TI 120 Sbjct: 122 RR 123 >gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 238 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+ +D+ + L L +AG+ V + +G Y+K E L++ D+++P+MD Sbjct: 1 MSKKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++V V +L Sbjct: 61 GIEVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 238 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+ +D+ + L L +AG+ V + +G Y+K E L++ D+++P+MD Sbjct: 1 MSKKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++V V +L Sbjct: 61 GIEVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42] gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42] gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens LL3] Length = 236 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GY+V +G A + V E L+L DI++P D Sbjct: 2 MDKKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 62 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580] gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580] gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + Y++ NG A DK + L+L D++MP DGIE Sbjct: 8 KILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLMMPGTDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R+ + ++ +T A + KPF R++V V LL + Sbjct: 68 VCRQVRDKK-ATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 125 >gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150] gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150] Length = 236 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEVV+ +G A ++ E L++ D+++PE+DG+ Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLMLPELDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+A+ + ++ ++ + ++KPF R+L+ + L Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 >gi|118588395|ref|ZP_01545804.1| Response regulator receiver [Stappia aggregata IAM 12614] gi|118439101|gb|EAV45733.1| Response regulator receiver [Stappia aggregata IAM 12614] Length = 119 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 95/116 (81%), Positives = 108/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMRRFL KAL AG++VVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDNDMRRFLAKALENAGHDVVSFDNGRSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPDLKVMFITGFAAVALNP+S+APK+AKVLSKPFHL+DLV EV R+L Sbjct: 63 LARRATELDPDLKVMFITGFAAVALNPESDAPKDAKVLSKPFHLKDLVQEVERMLA 118 >gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125] gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125] Length = 229 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN++ IL+ +D+ D+R + L K G+ V + G A ++ +EP L++ D++M E Sbjct: 1 MNKRHNILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVMMDE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG + + ++ +T + KPF R+LV + L Sbjct: 61 MDGFTACKEIRAF-SQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVAL 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 224 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+A+D+ + + L GYEV S +NG A D+ L+L D+ MP +D Sbjct: 1 MSKKILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALDQ-SSHNPDLILLDVNMPGID 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ R + ++F+T + KPF + +L V L Sbjct: 60 GFEVCRMIRD-HVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLRR 118 Query: 121 K 121 + Sbjct: 119 E 119 >gi|322418221|ref|YP_004197444.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320124608|gb|ADW12168.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 453 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 60/121 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GY+V + +GA+ E L++TD+ MP M Sbjct: 1 MPPKILIIDDDSSLRRVLEYNLQQEGYDVYTAADGAAGLQLFEERSPQLVITDLKMPGMT 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ E P V+ +T F A+ ++ L+KPF+ +L V + L + Sbjct: 61 GFEVLSTVKERAPSTVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKGLQL 120 Query: 121 K 121 + Sbjct: 121 Q 121 >gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T17] Length = 289 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 52/114 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E Sbjct: 2 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + R V+ +T AV L+KPF+L +L + L Sbjct: 62 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRAL 115 >gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 227 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILL +DD +R + AL +A ++V++ +G A E L++ DI +PE+DG E Sbjct: 2 KILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + RR + ++ ++F+T ++KPF R+LV + + Sbjct: 62 VCRRIRQ-RSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAI 114 >gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA [Mycobacterium avium 104] gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA [Mycobacterium avium subsp. avium ATCC 25291] gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104] Length = 228 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 230 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 61/117 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+AED+ +R F++ L +AGYEV+ NG A D ++ F +LL DI+MPE+DG Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +A D + ++ +T + ++KPF +L+ + LL Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRR 119 >gi|328952445|ref|YP_004369779.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328452769|gb|AEB08598.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +D+ + + L L G+EV++ +G +A V EE L+ DI +P MD Sbjct: 1 MARTILVVDDEPPILQTLSGILQDEGFEVLTAQDGETALKVVEEETPDLVFLDIALPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R E P V+ I+ F +V + + KP H ++ V L + Sbjct: 61 GLEVLRHLKEQQPLTPVVMISAFGSVENAVKATRWGAYDFIEKPPHADKIIVTVRNALEM 120 >gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 236 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 57/119 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED++ + L L + GY V +G A + F L++ D+++P +DG E Sbjct: 8 RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +AR + P L ++ +T L+KPFHL++L+ V +L K Sbjct: 68 VAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQ 126 >gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 228 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD+++ + L +GY C +G SA E L+L D+++P MD Sbjct: 4 MLGKILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVMLPHMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++ + + + V+ +T + + KPF ++L+ + +L Sbjct: 64 GIDVLKWIRKE-SETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122 Query: 121 KN 122 N Sbjct: 123 YN 124 >gi|74316922|ref|YP_314662.1| two component Fis family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056417|gb|AAZ96857.1| Two Component Transcriptional Regulator, Fis family [Thiobacillus denitrificans ATCC 25259] Length = 454 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 58/113 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D +RR L L AG+E +G A + E F L++TD+ M M G++ Sbjct: 2 RILLVDDQKSLRRSLSLMLQGAGFETGEAESGEEALSCLGAERFDLVITDLRMEGMSGVD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 L R L+P L V+ IT + ++ D+ L+KPF +D++ ++ Sbjct: 62 LLREIKRLNPLLPVILITAYGSIDSAVDAMRLGAFDYLTKPFREQDILEKIRA 114 >gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 233 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + KIL+ +D++ + + L K YEV++ +G A +E F L++ D+++P+ Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G E+ + E ++ ++ +T + + L+KPF +R+LV V L+ Sbjct: 61 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] Length = 239 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] Length = 232 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+ +D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 224 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 50/117 (42%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+A+DD ++R + L G+ V +G A P L++ DI+MP MDG Sbjct: 3 TILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIMMPIMDGWT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + +PDL ++ +T L+KPF +L V LL Sbjct: 63 LCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 119 >gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 239 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 8 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 67 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 68 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 126 Query: 120 I 120 Sbjct: 127 R 127 >gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ + L L +AGY V + +G +K + +L+L D+++P++D Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ ++ + + ++ +T ++KPF R+++ V +L Sbjct: 61 GMEVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRR 120 >gi|260892434|ref|YP_003238531.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ammonifex degensii KC4] gi|260864575|gb|ACX51681.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ammonifex degensii KC4] Length = 470 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +D+ + L L ++GY VV+ +G A +KV +L DI MPEMD Sbjct: 1 MAKLVLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++ + E P + V+ +T ++ ++ + + KP +L +L++ + + T+ Sbjct: 61 GIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTV 120 >gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA [Mycobacterium abscessus ATCC 19977] gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response transcriptional regulatory protein) [Mycobacterium abscessus] Length = 230 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD +R L ++L GY V +G A + + + L+ D++MP++D Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 61 GLEVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ + L L +AGY V + +G +K + +L+L D+++P++D Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ ++ + + ++ +T ++KPF R+++ V +L Sbjct: 61 GMEVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRR 120 >gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 57/121 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+ +D+ + L ++L GY+V S +NG A + R +++ DI++P M+G Sbjct: 8 NAHILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIMLPGMNG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E+ R + ++ +T VA L KPF L +L+ V LL K Sbjct: 68 LEVCRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRK 127 Query: 122 N 122 Sbjct: 128 Q 128 >gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] Length = 248 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 17 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 76 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 77 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 135 Query: 120 I 120 Sbjct: 136 R 136 >gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311] gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311] Length = 255 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D+ +RR L+ L AGY VVS +G A +K E L++ D+++P+MDG Sbjct: 11 TILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLPKMDGFA 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + ++F++ +++ L KPF ++L + +L Sbjct: 71 VCRRLRAE-SCVPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRR 126 >gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 241 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+D +RR L L + GY + +G +A K E + L+L D+++P MDG Sbjct: 7 QERILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +++ R V+ +T + + KPF R+LV+ V +L Sbjct: 67 VDVCRELR-NKKATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRS 125 Query: 122 N 122 + Sbjct: 126 S 126 >gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 248 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AG+EVV+ +G A V +E L++ D+++P+MDG Sbjct: 15 RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGFT 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +ARR E D ++F+T ++ ++KPF L ++V + +L + Sbjct: 75 VARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTH 133 >gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+KIL+ +DD ++ L L K GY V ++G +A + + L+L D++MP MDG Sbjct: 3 NEKILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVMMPVMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R+ D + ++ +T + KPF +++ + +L Sbjct: 63 WEVCRKIRAKD-NTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRR 120 >gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D+ +R L ++G+ V +GA A KV + +++ DI+MP +DG Sbjct: 4 KTVLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIMMPVLDGF 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ ++ + P + ++ +T ++KPF+ +++V V +L Sbjct: 64 EVCQQIRKYSP-VPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRR 120 >gi|296162067|ref|ZP_06844865.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295887688|gb|EFG67508.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1648 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ D+R ++ + L AG++V +G +A + R+E L+L+D++MP +DG Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHDVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720 Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 L R DP D V+ ++ A D L+KPF R+L+ V Sbjct: 721 LLRALRA-DPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 773 Score = 117 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59 + +L+ EDD+++R +++ L GY V+ + SA V P +L TD+VMP + Sbjct: 1376 TETVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPL 1435 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ELAR+A E P + V+F +G+ A+ + ++LSKP+ L ++ +L Sbjct: 1436 RSTELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALARKIRYVLQ 1495 Query: 120 IKN 122 +N Sbjct: 1496 TQN 1498 Score = 92.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 58/112 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD+ +R + L ++++ A + E S++LTD+ + G++ Sbjct: 1533 RILLVEDDELIRASTAELLRMFDFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1592 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 LA + PDL+V+F+TG+ V +A +L KP+ L DL++ + Sbjct: 1593 LALEVCAVRPDLRVIFLTGYDLVLTPAQRKVLPHAILLRKPYDLLDLIDALK 1644 >gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + IL+ +D+ DM + L + G+ +++ +NG A ++ +EP L++ DI+MP+ Sbjct: 1 MKEQMHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPD 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG E+ +R + + ++F+T + + KPF LR+L + L Sbjct: 61 MDGFEVCQRIRQ-TSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTL 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061] gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ KIL+ ED+ + R L L GYEV G + EE F L+L D+++PE+ Sbjct: 1 MNKGKILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPEL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E+ RR + + ++ IT +V ++KPF + +L+ + L Sbjct: 61 SGLEVLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLR 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+M Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVMLPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + RR + ++F+T A++ LSKPF ++L + +L Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ M F+ L G VVS +NG A +KVR+E ++L DI+MP MDG E Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR + + V+ +T + KPF R+LV+ + +L Sbjct: 69 LRRLRQA-SSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRR 123 >gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+M Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVMLPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + RR + ++F+T A++ LSKPF ++L + +L Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] Length = 236 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ + L L K GYEV +G A E L+L DI++P D Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREIRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119 >gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 230 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KI++ +D+ +R L ++L GY+V +G A + + +E L++ D++MP MDG+E Sbjct: 2 KIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L KPF L +L+ V LL Sbjct: 62 VCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRR 118 >gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+AEDD D+ + LGK GY+++ +G A V+ L++ DI+MP M Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R E + ++F++ + ++KPF+ +L+ VN L Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 120 I 120 Sbjct: 123 R 123 >gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)] gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 256 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD + + L +AGY V +G A + L++ D+++P MDG+E Sbjct: 30 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 89 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P + V+ +T ++KPF R+LV V +L Sbjct: 90 VCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 143 >gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+ D+ + + + GYEVV+ +G+ A D R+E F L++ DI+MP+ D Sbjct: 1 MS-RILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIMMPDTD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ E D+ V+ ++ ++KPF R+L+ + ++ Sbjct: 60 GFTACKKIKEFK-DIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINR 118 >gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 244 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ +DD ++R L + L +AG+EV++ G + + L++ DI+MP DG Sbjct: 8 SKQLLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNEMRKLLAQHNPDLIILDIMMPGDDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L ++ D + ++ +T + A ++KPF R+L + LL Sbjct: 68 FTLCQQIRR-DSQVPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLRR 125 >gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 237 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R L K L G+ V +G +A ++R + L++ DI++P++DG E Sbjct: 9 RILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLPKIDGWE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R ++ D+ ++ +T + KPF R++V V +L Sbjct: 69 VCREIRKI-SDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRR 124 >gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] Length = 237 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 58/122 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QK+L+ +D+ + L L ++G+EV++ +G K+ E +++ D+++P+MD Sbjct: 1 MSQKVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + + ++ +T ++KPF R++ + +L Sbjct: 61 GVEVCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRR 120 Query: 121 KN 122 Sbjct: 121 SQ 122 >gi|222055651|ref|YP_002538013.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221564940|gb|ACM20912.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 452 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 60/119 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD+ +RR L L + GYEV + ++G + L++TD+ M MD Sbjct: 1 MKGKILVIDDDNSLRRVLEYNLKEEGYEVQAASSGEEGLFLFGQSQPDLVITDMKMSGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+ + + E P+ V+ IT F V + ++ ++KPF+ +L V + L Sbjct: 61 GLMVLKSIKERSPETLVIIITAFGTVNIAVEAMKAGAYDYITKPFNRDELKLIVLKALQ 119 >gi|119899448|ref|YP_934661.1| two-component system regulatory protein [Azoarcus sp. BH72] gi|119671861|emb|CAL95775.1| two-component system regulatory protein [Azoarcus sp. BH72] Length = 227 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN ++L+ ED+ D+ L L GYEV +G + F L++ D+++P MD Sbjct: 1 MNTRLLIVEDNRDILANLADYLTLKGYEVDCAQDGLTGLHLAATHHFDLIVLDVMLPGMD 60 Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G L +R E D ++ +T A+ + L+KPF L +LV + +L Sbjct: 61 GFTLCKRLREGERSDTPIIMLTARDALDDRLIGFSAGADDYLTKPFALSELVARIEAVLK 120 >gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] Length = 235 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58 M + KIL+ +D+ MR+ + L + GY+V+ +G A + E+ +L++ D++MP+ Sbjct: 11 MEKIKILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPK 70 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 MDG + R + + ++ +T + +SKPF + LV VN LL Sbjct: 71 MDGWQTCREIRQ-SSKVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALL 129 Query: 119 TIKN 122 N Sbjct: 130 RRSN 133 >gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ +D+ + L L +AG+EV + +G + +D+ +E F L++ D+++P MD Sbjct: 1 MAKRILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R+ + + ++ +T ++KPF R++ V +L Sbjct: 61 GMDVCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRR 120 >gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321] gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V+ ++G A + + + L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKAIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L PD +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120 >gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM B1551] gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM B1551] Length = 235 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ +D+ + L L K GYEV +G A +KV E ++L DI++P+ D Sbjct: 1 MDKRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 233 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD+ +R + + L AG+ V +G +A + E L++ D++MP ++G+E Sbjct: 7 RVLVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVMMPGLNGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + + ++ +T ++KPF ++L V +L Sbjct: 67 VCRRLRQ-TSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRR 122 >gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56 M++ I++ +D+ +R L+ +L AGYEV + +G+ A + + L++ D+++ Sbjct: 1 MSKPIEATIVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVML 60 Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 P++DG + RR + D V+F+T ++KPF L ++V + Sbjct: 61 PDIDGFTVTRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 120 Query: 117 LLTI 120 +L Sbjct: 121 ILRR 124 >gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 233 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ +DD + + L GY +G A +PF L++ D++MP MD Sbjct: 1 MTRTILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMD 60 Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+EL RR + ++ ++ A ++KPF+ +L V LL Sbjct: 61 GLELCRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 254 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 3/124 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMPE 58 +++L+ EDDD +R + +AL G+EV +C +GASA + +P L++ D+++P Sbjct: 24 TRRLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPG 83 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G++L R L+ ++ I+ + L KPF LR+LV LL Sbjct: 84 LGGLDLCRELRRLNNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALL 143 Query: 119 TIKN 122 + Sbjct: 144 RRSS 147 >gi|148264719|ref|YP_001231425.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398219|gb|ABQ26852.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 457 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 55/119 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +D+ MR FL L + GY V N A + + + L+++D+ MP ++ Sbjct: 1 MQTKILVVDDEQSMREFLAILLEREGYYVAQAENAEVALKLLESDTYDLVVSDVSMPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+ L R P+ V+ IT + ++ ++KPF + ++ V L Sbjct: 61 GMALLARIKTTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALE 119 >gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp. HTCC2649] gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp. HTCC2649] Length = 237 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ ED+ ++R L +L AG+EVV+ G A + L + D+++P+MDG Sbjct: 11 TLLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGFA 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ E L ++F+T +V ++KPF L ++V + +L Sbjct: 71 VTRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127 >gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ ++ + L + GY+V++ +G + R E L++ D+++P M+G+E Sbjct: 3 KILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVMLPGMNGLE 62 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R ++ V+ ++ A ++KPF R+LV + L Sbjct: 63 VCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRR 121 >gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN I++ EDDD +R L L K GYEVV +G A + +E L+L D+ MP M Sbjct: 1 MNAATIMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+E+ RR L L ++F++ + ++KPF +L + +L Sbjct: 61 DGLEVCRRIR-LKTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|269964977|ref|ZP_06179142.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B] gi|269830280|gb|EEZ84505.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B] Length = 235 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ + + D+ ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRS 121 Query: 122 N 122 Sbjct: 122 Q 122 >gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D+ ++ L L K GY+ + +G A + + L+L DI++P+MD Sbjct: 1 MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + R+ + ++ +T ++KPF R+L+ V L Sbjct: 61 GFTVCRKLRQSIS-TPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRR 119 >gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+A+D++++ + L K GY V+ ++G A V + LL+ DI+MP+MDG E+ Sbjct: 6 ILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR E ++ ++F++ + ++KPF +LV VN L Sbjct: 66 TRRIREQH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRR 120 >gi|253699327|ref|YP_003020516.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251774177|gb|ACT16758.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 469 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ +D+ +R L + L + V + +G A + ++++ F L++TD+ MP M Sbjct: 1 MN--ILVVDDESVIRDGLARILEGDSFTVDTAKSGHVAIEHLQQKEFDLIITDLKMPGMS 58 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ L P+ V+ ITGFA V ++ + KPF ++ +V+ L Sbjct: 59 GFEVLAAVKTLQPETPVIMITGFATVETAVEAMKNGTVDYIVKPFTPEQILEKVHLALEQ 118 Query: 121 K 121 K Sbjct: 119 K 119 >gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 238 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ ED+ ++R L +L AG+EV + G++A E LL+ D+++P+MDG Sbjct: 8 TLLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDGFT 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + RR E D + V+F+T +V ++KPF L ++V + +L + Sbjct: 68 ITRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSH 126 >gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42] gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42] gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens LL3] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + Y + NG A + L+L D++MP DGIE Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMPGTDGIE 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ E ++ +T A + KPF R++V V LL Sbjct: 68 VCRQLREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 >gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319] gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319] Length = 235 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ +D+ + L L K GYEV +G A +KV E ++L DI++P+ D Sbjct: 1 MDKRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119 >gi|206891156|ref|YP_002249147.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743094|gb|ACI22151.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 356 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 NQ IL+ +D+ D L K L GY +G A KV E L++ D++MP+MDG Sbjct: 5 NQTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVYEVYPDLIILDVMMPKMDG 64 Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 E+ +R D + ++ +T + V + KPF R+L V L+T Sbjct: 65 YEVCQRLKTDDRTKFIPIIMLTAKSDVESKVKGFDIGADDYVPKPFDYRELSARVRSLIT 124 Query: 120 IK 121 K Sbjct: 125 RK 126 >gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 228 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +DD D+R + L G + + A A + ++ F L++ DI+MP MD Sbjct: 1 MGTSILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E +L ++ ++ + A L+KPF+ +L+ V L Sbjct: 61 GIEACMKIREER-NLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119 >gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 55/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GY+V +G A + +E L + D++MP++DG+ Sbjct: 2 KILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQLDGLG 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L KPF L +L+ V LL Sbjct: 62 VCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRR 118 >gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] Length = 240 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 >gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] Length = 244 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 52/121 (42%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q+IL+ +D+ +R L ++L GY +GA A +K LL+ DI MP MDG Sbjct: 10 TQRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDIQMPRMDG 69 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + ARR ++ +T V L KPF L +L + LL Sbjct: 70 LTAARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 129 Query: 122 N 122 + Sbjct: 130 S 130 >gi|309798826|ref|ZP_07693089.1| response regulator SaeR [Streptococcus infantis SK1302] gi|308117552|gb|EFO54965.1| response regulator SaeR [Streptococcus infantis SK1302] Length = 205 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ ++ + L +AGY+V ++G A + + +P L++TDI+MP MD Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVFVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G +L PD +FIT + + ++KPF R+LV V+ +L Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 >gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] Length = 240 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILL ED+ +R + L + GY V +G +A ++ + F L++ D+++P++ G Sbjct: 6 KRILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLMLPKLSGE 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R E ++ ++ +T V L KPF R+LV V LL + Sbjct: 66 RVCRAVRE-TSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAH 124 >gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 236 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QKIL+ +D+ ++ L L + GY V++ +G +AY+ + L+L D ++P M+ Sbjct: 1 MDQKILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDKPDLILLDCMLPRMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ ++ + + ++ IT + ++KPF +R+++ V L Sbjct: 61 GVDVCKKIRQ-SSSVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLRR 119 >gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] Length = 246 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+ +R L +L AG++V+S +G A D L + D+++P+MDG Sbjct: 10 TVLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGFT 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R+ E D +L V+F+T V ++KPF L ++V + +L + Sbjct: 70 ILRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTH 128 >gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 228 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD ++ FL +AL AGYEV + +NG L++ D +MP+MDGIE+ Sbjct: 6 ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +R D ++ ++ +T V+ L KPF +L+ V LL Sbjct: 66 CKRLRSAD-NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRR 120 >gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 233 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + KIL+ +D+ + + L K GYEV++ +G A +E F L++ D+++P+ Sbjct: 1 MKKLFKILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G E+ + E ++ ++ +T + + L+KPF +R+LV V L+ Sbjct: 61 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKALI 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum] Length = 240 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY+V+S +G A + E +L++ D++MP++DG Sbjct: 3 KEKILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T + V+ + KPF ++L + +L Sbjct: 63 YGVCQELRKE-SDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120 >gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516] gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516] Length = 233 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+LL ED+D++R+F L + G+E++ +G + + + DI++P +D Sbjct: 5 MSIKVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLPGID 64 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + P++ ++ +T + L+KPF+ R+L+ + +L Sbjct: 65 GFEVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRR 124 >gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 236 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +DD + L + L GY+V +G A + + P L+++D++MPEMDG+ Sbjct: 2 KKILVVDDDKTLLTLLKRYLEHRGYQVEQVCSGTEALEACVKNPPDLVVSDVLMPEMDGL 61 Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E RR + + +F++ A + + ++ L+KP R+L ++ LL Sbjct: 62 EFCRRLRNIPNGRLMPFIFLSSKAELEDRINGHSMGADDYLTKPVAPRELEAKIEALLER 121 Query: 121 KN 122 + Sbjct: 122 SH 123 >gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei 87.22] gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces scabiei 87.22] Length = 244 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 51/118 (43%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY +GA A +K L++ D+ MP MDG+ Sbjct: 11 QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDVQMPRMDGL 70 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ARR ++ +T V L KPF L +L V LL Sbjct: 71 TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128 >gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 237 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L+L D+++P+MDG+ Sbjct: 5 KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+AR + D+ ++ +T + ++KPF R+LV V L Sbjct: 65 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 121 >gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + + L L K GYEV+ +G A EE L++ D+++P++DG E Sbjct: 3 RVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLMLPKLDGFE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R + D+ ++ +T ++KPF+ R+L V ++ Sbjct: 63 VCRNIRK-TSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMRRSQ 120 >gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] Length = 251 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +DD + + L K GY+V+ +G A EE + + DI++P MDG Sbjct: 15 KKKILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDG 74 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL R+ E + V+F++ ++KPF +R+L+ V + Sbjct: 75 FELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 134 Query: 120 I 120 Sbjct: 135 R 135 >gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1403 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+A+D+ DMR +L + L + YEV + +G +A + L+LTD++MP +DG E Sbjct: 629 RILIADDNADMRDYLKRLLSQQ-YEVEAVVDGLTALKAIHSCHPDLVLTDVMMPGLDGFE 687 Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + + ++ ++ A + L KPF R+L+ V L + Sbjct: 688 LLKSLRADLSTQHIPIILLSARAGEESRVEGLEAGADDYLIKPFSARELLARVEATLKL 746 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD+D R FL AL ++G V + + + A + +++++D+ MP+MDG L Sbjct: 1279 ILVVDDDEDTRYFLAFALQQSGATVTTVGSASEALQVLVRSAPNVIVSDVGMPDMDGYML 1338 Query: 65 ARRAT-----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 ++ + +K + +T +A + + + KP + L+ + Sbjct: 1339 IQQIRMLEAQQGREKIKAIALTAYAGEIDRQQALREGFQRHIIKPINPSVLIKTI 1393 >gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 224 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ ED+ ++ +L + L GY V ++G A D RE+P L++ D+++P +D Sbjct: 1 MS-TILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGID 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ARR D+ ++ +T A+ L KPF +L+ + L Sbjct: 60 GLEVARRLRAA-SDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRR 118 Query: 121 KN 122 + Sbjct: 119 RQ 120 >gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD + FL L K GYEV NG A DK+R E F+L+L DI+MP++D Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E +R +L ++ ++F+T + ++KPF L +L V+ +L Sbjct: 61 GFEAIKRIRKLT-NIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119 >gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 257 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +DD + + L +AG V +G SA + L++ D+++P MDG+E Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR E P + V+ +T ++KPF R+LV V +L Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133 >gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + + L +AG+ ++ ++GA A K E L++ D+++P++DG E Sbjct: 6 KILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPKVDGFE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R + ++ +T L+KPF R+LV V +L Sbjct: 66 VCRSLRARGS-MPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRR 121 >gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 224 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD + L + L GY V N+G + ++ P LL+ DI+MP +D Sbjct: 1 MGARILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR + + ++ ++ V L KPF L +L+ V LL Sbjct: 61 GWEICRRFRREN-FIPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRR 119 Query: 121 K 121 K Sbjct: 120 K 120 >gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium kansasii ATCC 12478] Length = 240 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++ L +L G+EV + +NGA A D+ RE ++ D++MP MDG Sbjct: 15 RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 75 VLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 >gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L KAG++VV+ +G A +KV E +L++ D+++P++D Sbjct: 1 MGKKILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ +R + ++ +T ++KPF R++V V +L Sbjct: 61 GVEVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|323702939|ref|ZP_08114596.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323532070|gb|EGB21952.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 451 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+QK +L+ +D++ +R+FL L Y V + NG DK++ +L+TDI MPE+ Sbjct: 1 MSQKLVLVVDDEESVRQFLYDVLTDENYRVETAVNGEECLDKIKRLKPDVLVTDIRMPEL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DGI L R E ++ V+ +T F + + + KPF+L +N V R Sbjct: 61 DGITLLERIKEWQLNMPVILMTAFGTTDVAIQAMKLGAFDYIVKPFNLEHFLNLVRRA 118 >gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D+ + L L AGY V + +NG A + + L++ D++MP +DG Sbjct: 5 HILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELISSRQPDLVILDVMMPHLDGFS 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + + ++ +T + KPF +L+ V +L Sbjct: 65 TCERIRQF-SSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAVLRR 120 >gi|28901520|ref|NP_801175.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260363072|ref|ZP_05775941.1| response regulator GltR [Vibrio parahaemolyticus K5030] gi|260880359|ref|ZP_05892714.1| response regulator GltR [Vibrio parahaemolyticus AN-5034] gi|260894726|ref|ZP_05903222.1| protein GltR [Vibrio parahaemolyticus Peru-466] gi|260900076|ref|ZP_05908471.1| response regulator GltR [Vibrio parahaemolyticus AQ4037] gi|28810067|dbj|BAC63008.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308089446|gb|EFO39141.1| protein GltR [Vibrio parahaemolyticus Peru-466] gi|308091700|gb|EFO41395.1| response regulator GltR [Vibrio parahaemolyticus AN-5034] gi|308110048|gb|EFO47588.1| response regulator GltR [Vibrio parahaemolyticus AQ4037] gi|308112437|gb|EFO49977.1| response regulator GltR [Vibrio parahaemolyticus K5030] Length = 235 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIMMPGDDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L ++ + + D+ ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 >gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630] gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196] gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291] gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium difficile] gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196] gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +L+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD Sbjct: 1 MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ R+ E ++ ++ ++ + L+KPF+ +L V L+ Sbjct: 61 GIEVCRKVRESL-NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119 >gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W] gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W] gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 49/120 (40%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY +G A L++ DI MP MDG+ Sbjct: 9 QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDIQMPRMDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L + LL + Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 >gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family [Treponema succinifaciens DSM 2489] Length = 231 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ +R + + K YE + NG A + R + L++ D+++P+M G++ Sbjct: 2 KILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGLD 61 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R ++ ++ +T + ++KPF + L+ + +L K Sbjct: 62 ICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRRK 121 >gi|269104854|ref|ZP_06157550.1| putative DNA-binding response regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268161494|gb|EEZ39991.1| putative DNA-binding response regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 241 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +K+L+ +DD ++R L + L K+G+ VV+ G K+ L+L D++MP DG Sbjct: 5 KKVLVVDDDQEIRELLDEYLTKSGFHVVTAAEGEEMKRKLAAGEPDLILLDVMMPGDDGF 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + + D+ ++ +T + ++KPF R L+ + LL Sbjct: 65 TLCQHIRK-TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121 >gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 234 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV + +G A +KV E L+L D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+AR + D+ ++ +T + ++KPF R+LV V L Sbjct: 62 EVAREVRKNH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|158521788|ref|YP_001529658.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510614|gb|ABW67581.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 465 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 61/116 (52%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + +L+ +D+++MR L L + GY+V + NGA A + V ++PF +L DI MP MDG Sbjct: 8 KKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 + TE PD V+ ++ + + ++ +SKPF +++ + + Sbjct: 68 LAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKA 123 >gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D++ + L + L + GY+V ++G + +P+ LL+ D ++PE G++ Sbjct: 2 RILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L R + D + V+F+T V L KPF L++L+ V LL Sbjct: 62 LCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRR 118 >gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+ +KIL+ ED+ + RFL L GY+V ++G + E F L++ DI++P M Sbjct: 1 MSGKKILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIMLPYM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +GIE+ R+ + ++ ++ +T V ++KPF + +L+ + L Sbjct: 61 NGIEVLRKIR-HNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALK 119 Query: 120 IKN 122 KN Sbjct: 120 TKN 122 >gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus thermophilus ND03] Length = 235 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEVV+ +G A ++ + L++ D+++PE+DG+ Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+A+ + ++ ++ + ++KPF R+L+ + L Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 >gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c] gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 257 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R+ L ++L GYEV + +G +A + + E + + D++MP MDG+E Sbjct: 12 RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRERPDIAVLDVMMPRMDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 R+ DL V+ +T +A L KPF L +L Sbjct: 72 ACRQLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 118 >gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] Length = 239 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 243 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ M F+ L G V+S +NG A +KVR+E ++L DI+MP MDG E Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR + + V+ +T + KPF R+LV+ + +L Sbjct: 69 LRRLRQA-SSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRR 123 >gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 224 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 50/117 (42%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+A+DD ++R + L G+ V +G A P L++ DI+MP MDG Sbjct: 3 TILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPMMDGWT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + +PDL ++ +T L+KPF +L V LL Sbjct: 63 LCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKR 119 >gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus LMG 18311] Length = 235 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEVV+ +G A ++ + L++ D+++PE+DG+ Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+A+ + ++ ++ + ++KPF R+L+ + L Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 >gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 236 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYE V+ +G A +K EE L++ D+++P +DG+ Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+A+ + + ++ ++ + ++KPF R+L+ V L Sbjct: 62 EVAKEVRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 >gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 253 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+A+D+ +RR L L GY VV+ +G A + E L++ D++MP ++G Sbjct: 14 EKILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGY 73 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + ++ E+ D+ ++ +T VA L+KPF ++L ++ +L Sbjct: 74 GVCQKIREI-SDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130 >gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] Length = 232 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 232 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] Length = 232 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08] Length = 227 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + +L+ +DD D+R L L AGY+V S +G A + V LL+ D+VMP Sbjct: 1 MTEPITVLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPV 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDG+ L R + ++ +T + VA LSKPF +L+ + + Sbjct: 61 MDGLGLCRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAM 119 >gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 246 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV S +GA A R+ ++ D+++P+MDG+ Sbjct: 22 RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLT 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R PD+ V+F+T AV ++KPF L ++V + L+ Sbjct: 82 VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 138 >gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+LL ED+D++R+F L + G+E++ ++G + + + DI++P +D Sbjct: 1 MSIKVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + P++ ++ +T + L+KPF+ R+L+ + +L Sbjct: 61 GFEVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRR 120 >gi|39995119|ref|NP_951070.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39981881|gb|AAR33343.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298504149|gb|ADI82872.1| response receiver sensor histidine kinase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 516 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 57/116 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+ + +D+ D+ L L AGY + +G A D + E F L+L DI MP MDGIE Sbjct: 5 KVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALERESFDLVLLDIRMPRMDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + R + PDL V+ +T + + ++ +SKPF D+ V R + Sbjct: 65 VLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIQ 120 >gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 233 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+ +DD +R + A+ KA Y + NG A +++P L++ DI MPEMDG Sbjct: 2 QNILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIGMPEMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ R + ++ ++F++ ++KPF R+LV + +L N Sbjct: 62 EVCREIRK-HSEVPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILKRTN 120 >gi|153838150|ref|ZP_01990817.1| two component transcriptional regulator, winged helix family [Vibrio parahaemolyticus AQ3810] gi|149748466|gb|EDM59325.1| two component transcriptional regulator, winged helix family [Vibrio parahaemolyticus AQ3810] Length = 226 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIMMPGDDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L ++ + + D+ ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 >gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation) [Geobacillus kaustophilus HTA426] gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 235 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L KAG+ VV+ ++G A KV E +L++ D+++P++D Sbjct: 1 MGRKILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ +R + ++ +T ++KPF R+++ V +L Sbjct: 61 GVDVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRR 120 >gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 236 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M ++ IL+ +D+ + L L K GY V N+G A +KV E L+L DI++P M Sbjct: 1 MTERKILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPLM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+E+ R + + ++ +T + ++KPF R+L+ V L Sbjct: 61 DGMEVCREVRK-TSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLR 119 >gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 243 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 50/120 (41%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ +D+ +R L ++L GY +G A K L++ DI MP MDG+ Sbjct: 9 QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDIQMPRMDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L + LL + Sbjct: 69 TAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 >gi|147678593|ref|YP_001212808.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274690|dbj|BAF60439.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 453 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 60/122 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M K+L+ +D++ +R+ L L G++V+ NG A +K+ +L DI MPE+D Sbjct: 1 MMSKVLVVDDEESVRQMLKDVLEDDGHQVMLAENGREALEKITVRHPDAVLLDIRMPEID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ + + ++ +T F + + + KPF++ +L+ V + + + Sbjct: 61 GLAVLDIVRREGSTVPIILMTAFGITDMAIQAIQTGAYDYIIKPFNIDELLLTVKKAVNM 120 Query: 121 KN 122 ++ Sbjct: 121 QD 122 >gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM 22836] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ ED+ + L K L + GY V +G V + L++TD+++P ++G Sbjct: 2 KKILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMGKRLVNNHIYDLIITDVILPHINGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL + + P++ ++ +T D + KPF LR+L ++ LL KN Sbjct: 62 ELCKEIRAVHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLKRKN 121 >gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51] gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ +RRF+ L AGYEV +G A + E L++ D+++P +DG+E Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + E PD ++ +T + KPF+ +L+ + +L ++ Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125 >gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ M+ + L GY+ ++ +G A + + + L+L DI+MP++D Sbjct: 1 MKKTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ + R + D + ++ +T +A ++KPF L+ LV ++N LL Sbjct: 61 GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKR 120 >gi|319899013|ref|YP_004159106.1| response regulator [Bartonella clarridgeiae 73] gi|319402977|emb|CBI76530.1| response regulator [Bartonella clarridgeiae 73] Length = 120 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 88/116 (75%), Positives = 107/116 (92%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL +AGYEV +NG SAY+ ++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLVKALERAGYEVTDFDNGVSAYECLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALNP+ +AP +AKVLSKPFHLR+LV+E+ ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNPNHDAPPDAKVLSKPFHLRELVSEIEKIL 117 >gi|203288189|ref|YP_002223204.1| response regulatory protein [Borrelia recurrentis A1] gi|201085409|gb|ACH94983.1| response regulatory protein [Borrelia recurrentis A1] Length = 451 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+A+D+ ++R + L + GY V + ++G A + ++ E +++D+ MP++ Sbjct: 1 MS-KLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEKIDAIISDLRMPQIS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + + + ++ + +T V D+ L+KP L L+ + R L Sbjct: 60 GEELLKIVKDRNLNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALKK 119 Query: 121 KN 122 +N Sbjct: 120 RN 121 >gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 226 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 63/117 (53%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL ED++++R + L +EVV+ NG A +E+ F L++ D+++PE+DG + Sbjct: 2 RILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGFQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + D ++ V+F+T AV L+KPF L +L+ +N L+ Sbjct: 62 ICEQIRLTDMEVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKR 118 >gi|319405780|emb|CBI79406.1| response regulator [Bartonella sp. AR 15-3] Length = 120 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 88/116 (75%), Positives = 105/116 (90%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL KAL +AGYEV +NG SAY+ ++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLAKALERAGYEVTDFDNGVSAYECLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN + +AP +AKVLSKPFHLR+LVNE+ ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNHDAPPDAKVLSKPFHLRELVNEIEKIL 117 >gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++ +IL+ +D++ +RR L L K GY + +G A K +S++L D+++P Sbjct: 1 MSEQSNRILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDYSIILLDVMLP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 MDGIE+ R + V+ +T + KPF R+++ V + Sbjct: 61 GMDGIEVCTRLRQ-TKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAI 119 Query: 118 LTIKN 122 L + Sbjct: 120 LRRSS 124 >gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 244 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++ +RR L L + Y + NG A E + L+L D+++P DGIE Sbjct: 12 KILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLPGKDGIE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + ++ E V+ +T A + KPF R++V V LL Sbjct: 72 VCKQLREKK-ATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 127 >gi|307944474|ref|ZP_07659814.1| response regulator receiver protein [Roseibium sp. TrichSKD4] gi|307772223|gb|EFO31444.1| response regulator receiver protein [Roseibium sp. TrichSKD4] Length = 119 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 92/116 (79%), Positives = 109/116 (93%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAEDD+DMRRFL KAL AG++VVS +NG SAY+++REEPFSLLLTDIVMPEMDGIE Sbjct: 3 RILLAEDDNDMRRFLAKALENAGHDVVSFDNGKSAYERLREEPFSLLLTDIVMPEMDGIE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRAT+LDPDLKVMFITGFAAVALNP+S+APK+AKVLSKPFHL+DLV EV ++++ Sbjct: 63 LARRATQLDPDLKVMFITGFAAVALNPESDAPKDAKVLSKPFHLKDLVQEVEKMMS 118 >gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 233 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M + KIL+ +D++ + + L K YEV++ +G A +E F L++ D+++P+ Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + G E+ + E ++ ++ +T + + L+KPF +R+LV V L+ Sbjct: 61 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+M Sbjct: 1 MKHISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ EDD + + L K G+ V +G +A ++EE L++ D+++P +DG+E Sbjct: 3 KILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDGLE 62 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR + L ++ +T ++KPF R+LV + LL Sbjct: 63 LCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRR 121 >gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13] Length = 233 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K GYEV +G A +KV E L+L DI++P+ D Sbjct: 1 MEKKILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119 >gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM B1551] gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM B1551] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++LL +D+D +RR L L K GY + +G A +K + L++ D++MP +DGI Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ ++ E ++ +T + KPF R++V V LL + Sbjct: 65 EVCKQIREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 123 >gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 230 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+L+ +D+ + L L +AG+EV++ ++G YD R+E +++ D+++P MD Sbjct: 1 MAKKVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLMLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ ++ + ++ +T + ++KPF R++V V +L Sbjct: 61 GMDVCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRR 120 >gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580] gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2] gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580] gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2] Length = 240 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KIL+ +D++ + L L ++GY VV+ +G + K EE L++ D+++P+MD Sbjct: 1 MSKKILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + + ++ +T ++KPF R++ V +L Sbjct: 61 GIEVCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRR 120 >gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 49/120 (40%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY +G A L++ DI MP MDG+ Sbjct: 9 QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L + LL + Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 >gi|148654515|ref|YP_001274720.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] gi|148566625|gb|ABQ88770.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] Length = 513 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 58/117 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ EDD + F + L GY V + NG A ++ F L+LTD+ MPEM G+EL Sbjct: 14 ILVVEDDPMVNSFCARLLHMKGYSVKTVFNGREALTMLQTNRFDLVLTDLQMPEMGGMEL 73 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R E PD+ + T +A V ++ L+KPF + +L V R + + Sbjct: 74 LREMREQHPDIDTIMFTAYATVETAREALKLGAFDYLTKPFSVDELERTVRRAVEWR 130 >gi|301630365|ref|XP_002944292.1| PREDICTED: acetoacetate metabolism regulatory protein AtoC-like, partial [Xenopus (Silurana) tropicalis] Length = 467 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 57/122 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +L+ +D+ + L AL ++G +V + NG A + +E L+++D MP MD Sbjct: 35 MTHNVLVVDDEPKLCDLLSSALSQSGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMD 94 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G L P L V+ +T ++ V S ++KPF + +L V + L Sbjct: 95 GPALLAEIKVRYPHLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 154 Query: 121 KN 122 ++ Sbjct: 155 RD 156 >gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] Length = 247 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 7 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 67 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 125 >gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +R L ++L GYEV+ +G A + V E LL+ D++MP MDG+E Sbjct: 2 KILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T V+ L KPF L +L+ V L+ Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118 >gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 241 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 61/117 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++R L +L AGY+V+S +G A E L++ D+++P+MDG Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ D+ ++F+T + + ++KPF L ++V +N +L Sbjct: 71 VTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 127 >gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+++L+ ED+ + R L L GY V + +G + Y+ + L+L D+++PE++ Sbjct: 1 MNERVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ RR + + V+ +T V ++KPF + +L+ V +L I Sbjct: 61 GIEVLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRI 120 >gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 57/116 (49%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ + L + G+ V S +G +A + +++ P L++ D+++PE+DG E+ Sbjct: 6 ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPELDGFEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ + L ++ +T ++KPF+ R+LV V +L Sbjct: 66 CKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRR 121 >gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 239 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++++ +D+ ++R L +L AG+EV + +G SA VR+ L++ D+++P+MDG Sbjct: 7 RLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPDMDGFT 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + RR E + V+F+T ++KPF L ++V + +L + Sbjct: 67 VTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 125 >gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911] gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L + Y + +G+ A +K E + ++L D++MP DGIE Sbjct: 6 KILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLMMPGKDGIE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R E V+ +T + KPF R++V V LL + Sbjct: 66 VCRELRE-RKATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSS 123 >gi|254227379|ref|ZP_04920811.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262396356|ref|YP_003288209.1| putative two-component response regulator [Vibrio sp. Ex25] gi|151939991|gb|EDN58817.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262339950|gb|ACY53744.1| putative two-component response regulator [Vibrio sp. Ex25] Length = 235 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ + + D+ ++ +T A ++K F R+L+ + +L Sbjct: 63 FTLCQKLRK-NSDVPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRS 121 Query: 122 N 122 Sbjct: 122 Q 122 >gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 225 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D+D++ + L + ++V NG A + ++ + SL++ DI+MPEMD Sbjct: 1 MNEKILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + D D ++F++ ++V + L+KPF +LV V LL Sbjct: 61 GIEVLKTI-GNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRR 119 Query: 121 KN 122 N Sbjct: 120 NN 121 >gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 243 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 51/120 (42%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++L+ +D+ +R L ++L GY +G A KV L++ DI MP MDG+ Sbjct: 9 QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPRMDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L + LL + Sbjct: 69 TAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 >gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ ++ L + L + GY+V +NG + + +E + LL+ D ++P+ G++ Sbjct: 2 RILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + V+F+T + L KPF LR+L+ V LL Sbjct: 62 ICQYLRDQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRR 118 >gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++KILL EDD + RF+ L GY+V +NG + ++E+ F LLL DI++P ++ Sbjct: 1 MDKKILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + E D+ ++ +T + + L+KPF + +L+ + L Sbjct: 61 GMEVCSQIREF-SDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRR 119 >gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 239 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 54/117 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R L +L AG+EVVS NG A L + D+++P+MDG Sbjct: 12 KLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVMLPDMDGFT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR V+F+T ++KPF L ++V + +L Sbjct: 72 VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128 >gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R L ++L GY +G A ++ L++ D+ MP MDG+ Sbjct: 9 ERILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDVQMPRMDGL 68 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR + ++ +T V L KPF L +L + LL + Sbjct: 69 TAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 >gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 256 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 KIL+ EDD +R L L K GY + +G A R SL++ D+++P +DG Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL R + + ++ +T ++ + + LSKPF +R+L+ + LL Sbjct: 90 ELCRLIR-TESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQ 148 >gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum EA 2018] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D++ + + + L GY+V++ +G A +K + E L+L D+++P MDG Sbjct: 4 EKILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGY 63 Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ++ R ++ V+ IT ++KPF +R+LV V +L Sbjct: 64 DVCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRR 123 >gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+A+D+ ++R L K L K Y+V NG A + ++L++ D++MP++DGIE Sbjct: 5 RVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKVDGIE 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR ++ ++ +T + ++KPF + ++V V LL Sbjct: 65 VCRRLRNKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRR 120 >gi|330505803|ref|YP_004382672.1| two component, sigma54 specific, fis family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328920089|gb|AEB60920.1| two component, sigma54 specific, fis family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 446 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++++ +D+ +R + + L +G+EV +C + A A V + ++++D+ MP D Sbjct: 1 MSAQVIVVDDEAAIREAVQQWLELSGFEVRTCASAAEALAVVDRDFPGIVVSDVRMPGSD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G++L + ++D DL V+ +TG V + + + KPF L++ V R L Sbjct: 61 GLQLLDKLLQIDSDLPVILVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRALDK 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family), BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278] Length = 231 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +DD +R + AL KAG V +G +A + ++ L++ D+ MPE D Sbjct: 1 MSPRILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVGMPEFD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + ++F++ ++KPF R+LV VN +L Sbjct: 61 GLEVCRRIRR-TSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRR 119 >gi|49474143|ref|YP_032185.1| response regulator [Bartonella quintana str. Toulouse] gi|49239647|emb|CAF26017.1| Response regulator [Bartonella quintana str. Toulouse] Length = 120 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 90/116 (77%), Positives = 107/116 (92%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL KAL +AGYEV +NG SAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLAKALERAGYEVADFDNGVSAYERLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN +S+AP +AKVLSKPFHLR+LVNEV ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNSDAPPDAKVLSKPFHLRELVNEVEKIL 117 >gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 238 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + +L K G+EV++ +G E+ L++ D+++P++DG+ Sbjct: 2 KKILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAFHEKNPDLVILDLMLPKIDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+ R + + ++ +T + ++KPF R+L+ V L + Sbjct: 62 EVCREIRK-TSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQQ 120 >gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293] gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293] Length = 218 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65 L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEMDG+ + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61 Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + D+ ++F+T + + KPF +L+ + +L Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora] gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora] Length = 248 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +RR L L GY+VV+ ++GA A + L++ D++MP +DG Sbjct: 8 KETILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDVMMPRLDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA L KPF ++L + +L Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRR 125 >gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 226 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D+ ++ ++ L K Y ++ +NGA A ++ ++ L++ D++M MDG Sbjct: 4 KTVLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVMMEGMDGF 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + R + L V+ +T A + KPF ++L+ V L N Sbjct: 64 HVCERIRQKHS-LPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRAN 122 >gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R + AL KAG + +GA+A + L++ DI MPEMD Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGRRAPDLVVLDIGMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + D+ V+F++ ++KPF R+LV VN +L Sbjct: 61 GLEVCRRLRHI-SDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRR 119 >gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 224 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL ED++ + R + L GYEV +G S ++ + L+L DI++P++ Sbjct: 1 MAEKILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR DL V+ +T +V ++KPF + +L+ + L Sbjct: 61 GMEVLRRLRRE-SDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRK 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++K+L+ +D+ + L L +AG+ VV+ N+G A +KV E ++ D+++P++D Sbjct: 1 MSKKVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ ++ + ++ +T ++KPF R++V V +L Sbjct: 61 GVEVCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299] gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115] gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300] gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224] gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948] gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937] gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299] gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115] gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300] gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224] gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948] gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937] gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] Length = 247 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 7 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 67 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 125 >gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 296 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +DG Sbjct: 65 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 124 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR E + ++ +T +A ++KP+ R+L+ + ++ Sbjct: 125 LCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 180 >gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378] Length = 225 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD D+ A+ KAGYE + ++G +A R++ L++ DI +PEMD Sbjct: 1 MPARILIVDDDPDILDVTGFAVEKAGYETLFASDGLNALKASRQQLPDLIVLDIGLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D+ ++F+T L+KPF R+LV + +L Sbjct: 61 GLEVCREIRK-SSDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKR 119 >gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D++D+ FL +L + YEV + ++G A +K++ L+L DI+MP + Sbjct: 1 MREKILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIK-LYPDLILLDIMMPGKN 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ ++ ++F+T A + KPF LR L ++ L Sbjct: 60 GYEVCNDIRDIVS-CPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHLRR 118 Query: 121 K 121 + Sbjct: 119 E 119 >gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37] gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L AL +AG+ V+ +GA A E L++ DI +PEMDG E Sbjct: 2 KILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGLPEMDGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D+ V+F+T ++KPF R++V V +L Sbjct: 62 VCRRLRA-RSDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRR 117 >gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E D ++ ++ ++ + A L+KPF+ +L+ V L Sbjct: 61 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119 >gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781] gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763] gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719] gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781] gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763] gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719] gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] Length = 244 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 4 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 64 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 122 >gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 239 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59 M IL+ +D+ ++ L L G+ V S +G A + + E +L+L DI+MP M Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G EL + DL ++F++ ++KPF +L+ + L Sbjct: 61 SGYELCSQIRREW-DLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R L L K GY V++C +G A + +E L + D++MP + Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL R E DL V+ +T V L+KPF +L+ + LL Sbjct: 61 GWELCREIREFY-DLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRR 119 >gi|319404337|emb|CBI77932.1| response regulator [Bartonella rochalimae ATCC BAA-1498] gi|319407342|emb|CBI80985.1| response regulator [Bartonella sp. 1-1C] Length = 120 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 87/116 (75%), Positives = 105/116 (90%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL KAL +AGYEV +NG SAY+ ++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLAKALERAGYEVTDFDNGVSAYECLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN + +AP +AKVLSKPFHLR+LV+E+ ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNHDAPPDAKVLSKPFHLRELVSEIEKIL 117 >gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina] gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina] Length = 248 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GY VV+ +G A + +++E +L++ DI++P++DG Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMIPKLDG 68 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 69 YGVCQEIRKE-SDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRR 126 >gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ ++ +L + L G+ V ++G + RE P L++ DI++P MDG E Sbjct: 9 RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGFE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D+ ++ +T V L KPF +L+ + LL Sbjct: 69 VCRRLRA-GSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRR 124 >gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262] gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262] gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023] Length = 225 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +L+ + LL N Sbjct: 62 ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 >gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2] gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2] Length = 235 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ + L L K G+ VV +G A E L+L DI++P D Sbjct: 1 MSKTILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNRD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + D ++ +T + ++KPF R+L+ V L Sbjct: 61 GMEVCREIRKKY-DFPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119 Query: 121 KN 122 +N Sbjct: 120 QN 121 >gi|302036150|ref|YP_003796472.1| transcriptional regulatory protein pilR [Candidatus Nitrospira defluvii] gi|300604214|emb|CBK40546.1| Transcriptional regulatory protein pilR [Candidatus Nitrospira defluvii] Length = 459 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ +R L L +AGY V ++G A +V++E F L++TD+ MP + G+ Sbjct: 2 EKILVVDDEQGLRDVLSIMLKRAGYVVTVASDGDEAIAQVQKEIFDLVITDLKMPRVGGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+ + PD V+ IT FA+ ++ L+KPF + ++ + + + Sbjct: 62 EVLKAVKAASPDTVVLMITAFASADSAVEAMKHGAYDYLTKPFQVDEVQLIIRNAIERR 120 >gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 237 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 51/120 (42%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +D+ +R L ++L GY +G A + L++ DI MP MDG+ Sbjct: 5 ERILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPRMDGL 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR + ++ +T V L KPF L +L + LL + Sbjct: 65 TAARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 124 >gi|315222867|ref|ZP_07864751.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188061|gb|EFU21792.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++ILL +D+ ++ + L +AGYEV ++G A + ++ L++TDI+MP MD Sbjct: 1 MAKRILLVDDEVEITEINKRYLIQAGYEVNVAHDGQEALEIFQKYSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G +L L P+ +FIT + S + ++KPF R+LV VN +L Sbjct: 61 GYDLIGEVQYLSPEQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRR 120 >gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN++IL+ ED++ + R L L Y V +G + + + L+L D+++P ++ Sbjct: 1 MNERILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ RR + + V+ +T V + ++KPF + +L+ V +L I Sbjct: 61 GIEVLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRI 120 >gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 246 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ ED+ + + K+L +AGYEV +CN+G A D + E + L++ D+ +P MDG+E Sbjct: 22 KLLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELYDLIVLDLNLPGMDGME 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R + + + KV+ ++ + +A + + KPFHL++L V L K Sbjct: 82 ILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRK 139 >gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 231 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++L+ +D+ ++ + AL G+EV S ++GA A +VR+ LLL D+++P+M+G Sbjct: 6 HRVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGF 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ARR + ++F+T A ++KPF L +LV + +L Sbjct: 66 EVARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRR 123 >gi|225869229|ref|YP_002745177.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702505|emb|CAX00433.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ ++ + L +AGY V + ++G+ A + ++ + L++TD++MP MD Sbjct: 1 MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIITDVMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + PD +FIT + S + +SKPF R+LV V +L Sbjct: 61 GYDFIGEVLLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNR 120 >gi|110597377|ref|ZP_01385664.1| Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type [Chlorobium ferrooxidans DSM 13031] gi|110340921|gb|EAT59392.1| Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type [Chlorobium ferrooxidans DSM 13031] Length = 451 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD +RR L L + GYEV + +G ++ L++TD+ M MD Sbjct: 1 MKAKILVIDDDTSLRRVLEYNLQEEGYEVETAASGEEGLMRLDLFGPDLVITDMKMTGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+++ + E P+ V+ IT F +V ++ ++KPF+ L V + L Sbjct: 61 GMKVLKSVRERSPETLVIIITAFGSVDAAVEAMKAGAYDYITKPFNRDSLRLTVKKALQ 119 >gi|308272187|emb|CBX28794.1| hypothetical protein N47_L13920 [uncultured Desulfobacterium sp.] Length = 525 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 66/115 (57%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++++R+ LI+ L K G VV+ +G + ++ E L+L D+ MP ++GIE+ Sbjct: 60 VLVVDDEEEIRKILIQILEKEGLRVVTAEDGQESMQQICLEVPDLILLDVHMPGINGIEV 119 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++ +D DL V+ IT +A + ++ L+KPF ++V VNR L Sbjct: 120 LKKIKGIDDDLPVVLITAYANIHQAVEAMKGGAYDYLAKPFDNNEVVWIVNRALA 174 >gi|301059863|ref|ZP_07200754.1| putative Nitrogen assimilation regulatory protein [delta proteobacterium NaphS2] gi|300446013|gb|EFK09887.1| putative Nitrogen assimilation regulatory protein [delta proteobacterium NaphS2] Length = 480 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DDD +R K L + GY V + +G + ++ P L++ D+ +P ++ Sbjct: 1 MS-TILIIDDDDQLRASFEKLLKEEGYRVETAPSGETGLKRIEALPPDLVILDMRLPGIN 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G+E +R LDP L V+ +T F ++ + KPF + ++++ + + L Sbjct: 60 GLETFKRINALDPKLPVIIMTAFGTTETAIEATKMGAFDYILKPFDIPEMLDVIRKAL 117 >gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL J1-208] Length = 225 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|163852691|ref|YP_001640734.1| response regulator receiver [Methylobacterium extorquens PA1] gi|170746493|ref|YP_001752753.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] gi|188582714|ref|YP_001926159.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|218531532|ref|YP_002422348.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] gi|240140025|ref|YP_002964502.1| putative response regulator receiver; CheY-like protein [Methylobacterium extorquens AM1] gi|254562452|ref|YP_003069547.1| response regulator receiver; CheY-like protein [Methylobacterium extorquens DM4] gi|163664296|gb|ABY31663.1| response regulator receiver [Methylobacterium extorquens PA1] gi|170653015|gb|ACB22070.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] gi|179346212|gb|ACB81624.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|218523835|gb|ACK84420.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] gi|240009999|gb|ACS41225.1| putative response regulator receiver; CheY-like protein [Methylobacterium extorquens AM1] gi|254269730|emb|CAX25702.1| putative response regulator receiver; CheY-like protein [Methylobacterium extorquens DM4] Length = 118 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 97/116 (83%), Positives = 107/116 (92%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KILLAEDD+DMRRFL KAL AGY+V+S +NG SAY+++REEPF LLLTDIVMPEMDGIE Sbjct: 2 KILLAEDDNDMRRFLAKALQNAGYDVLSFDNGLSAYNRLREEPFELLLTDIVMPEMDGIE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 LARRATELDPD+KVMFITGFAAVALNPDS APK+AKVLSKPFHLRDLVNEV +LL Sbjct: 62 LARRATELDPDIKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVNEVEKLLA 117 >gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ +R +++ L GYEV + +GA A ++ ++ D++MP MDG+ Sbjct: 2 RVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGLT 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR ++ +T AVA D L KPF L +L+ V LL Sbjct: 62 MCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRR 118 >gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi] Length = 242 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L +L G+EV + NGA DK R L+ D++MP MDG Sbjct: 18 RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFG 77 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D V+F+T AV ++KPF L ++V + +L Sbjct: 78 MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRR 134 >gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD+++ + L +GY+ C NG A + E L+L DI++P +DG++ Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + D + ++ +T + + KPF ++L+ V +L N Sbjct: 67 VLKWIRK-DSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124 >gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L] gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590] Length = 241 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ +D+D +RR L L + + + ++G AY+ + ++ +L D+++PEMD Sbjct: 1 MSKEILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119 >gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 253 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+A+D+ +RR L L GYEVV+ +G A E L++ D++MP+++G Sbjct: 13 SGKILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVMMPKLNG 72 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + ++ ++ ++ +T VA L+KPF ++L + +L Sbjct: 73 YGVCQKIR-TQSEVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRR 130 >gi|90409613|ref|ZP_01217630.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] gi|90328966|gb|EAS45223.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] Length = 241 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N+K+L+ +DD ++R L + L K+G+ V + G ++ L+L D++MP DG Sbjct: 4 NKKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRLASGYPDLILMDVMMPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + + D+ ++ +T + ++KPF R L+ + LL Sbjct: 64 FTLCQYIRK-TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121 >gi|24987831|pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus Subtilis Length = 136 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++ V +L Sbjct: 62 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 >gi|283851575|ref|ZP_06368855.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283573109|gb|EFC21089.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 651 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 3/124 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ +LL +D++D+RRFL L GY V + NG A E S++LTDI MP MD Sbjct: 1 MSETLLLVDDEEDIRRFLGLFLADLGYVVHAAANGEEALAMFDEVNPSIVLTDIKMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117 G+EL +R PD +V+ I+G + L + + A ++KP + L + R+ Sbjct: 61 GLELLKRIKARSPDTEVVMISGHGDMDLAINCLQYEAADFVTKPINHDILDAALKRIDEK 120 Query: 118 LTIK 121 L+++ Sbjct: 121 LSLR 124 >gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 61 GIEACMKIRENR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN] gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae] gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL +DD +R L ++L GY V N+G A + V + L+ D++MP +DG+E Sbjct: 2 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R+ DL ++ +T +V+ L KPF L +L+ + LL Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRR 118 >gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13] Length = 239 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D +RR L L + Y + +NG +A + E+ + ++L D++MP MDG+E Sbjct: 6 RILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMPGMDGME 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + E ++ +T + KPF R++V V LL Sbjct: 66 VCKEIREKK-ATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium botulinum H04402 065] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD+++ + L +GY+ C NG A + E L+L DI++P +DG++ Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + D + ++ +T + + KPF ++L+ V +L N Sbjct: 67 VLKWIRK-DSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124 >gi|148262094|ref|YP_001228800.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395594|gb|ABQ24227.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 508 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + KIL+ +D+ D+ L L AGY+ + +G A + E F+L+L DI MP M Sbjct: 1 MEKDKILIVDDEPDIALILKLQLEDAGYKTATARDGVEALAAIAREKFALVLLDIKMPRM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG+++ R D+ V+ +T + + ++ ++KPF D++ +V R + Sbjct: 61 DGMQVLERVQSHYSDVAVVMMTAHGSEDIAVEAMKNGAFDYIAKPFSSEDVLQKVKRAIQ 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] Length = 240 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 >gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ ED+ +R L L + G+ + + SA D + E L+L D + P Sbjct: 13 MTARILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWMFPGGS 72 Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GI+LA++ E + V+ +T ++KPF ++LV + ++ Sbjct: 73 GIQLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVM 132 Query: 119 TI 120 Sbjct: 133 RR 134 >gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.] Length = 234 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + + L + Y V + +G A+DK+ E PF L++ DI+MP++DG+ Sbjct: 11 KILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMPKIDGLA 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + V+ +T V L KPF +L+ V L Sbjct: 71 VLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRR 127 >gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4] gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59 N+ IL+ +D+ MR L L G+++ + G A K+R P + L++ DI+MP++ Sbjct: 4 NKTILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDL 63 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ + E + ++ ++ A+ D L+KPF +L+ V LL Sbjct: 64 DGFEVCKIVRE-YSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLR 122 Query: 120 I 120 Sbjct: 123 R 123 >gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ ED+ + +F+ L GYEV +G + RE L++ D ++P + Sbjct: 1 MTHHILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLPGIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ RR + ++ +T V+ + KPF + +L+ V L Sbjct: 61 GPEICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRR 120 >gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+QKIL+ +D+ + L L K GY+VV N+G +A + E +L+L DI++P D Sbjct: 1 MSQKILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLPGKD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ R + ++ V+ +T A ++KPF R+L+ V L Sbjct: 61 GNEVLREVRKTQ-NIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRR 119 Query: 121 KN 122 + Sbjct: 120 EQ 121 >gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 230 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+A+DD +R + AL KAG + + ++GA+A + L++ DI MPEMD Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHTPDLVVLDIGMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR D+ V+F++ ++KPF R+LV VN +L Sbjct: 61 GLEVCRRLR-HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRR 119 >gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] Length = 231 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L ++L GY +V +G A KV+ E +++ D++MP++DG+E Sbjct: 2 KILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R D ++ +T +V+ L+KPF L +L+ L+ Sbjct: 62 VCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRR 118 >gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] Length = 228 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ + + L +AGY+V +GA A K + + L+++DI+MP MD Sbjct: 1 MTYKILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKFNQYQYDLIISDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + P+ +FIT + S + +SKPF R+LV V +L Sbjct: 61 GYDFIGEVLLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNR 120 >gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103] gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103] Length = 267 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN KILL +DD ++ L + L G+EVV ++G A + + + LLL D++MP+ + Sbjct: 36 MN-KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKN 93 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI+ + + V+ +T + L KPF+ R+LV + +L Sbjct: 94 GIDTLKELRQQY-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 152 Query: 121 KN 122 N Sbjct: 153 SN 154 >gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 239 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61 QKIL+ ED++ +R F+ L + G++ V +G A +KV + P ++ L D+++P +DG Sbjct: 2 QKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDG 61 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R E P L ++ +T A + KPF ++L+ +N L+ Sbjct: 62 FEVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRR 120 >gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 64/120 (53%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQ IL+ ED++ + R L L GY+V NG + + + L+L DI++P ++ Sbjct: 1 MNQSILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGIN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIEL RR + D ++ V+ +T +++A + ++KPF + +L+ V L + Sbjct: 61 GIELLRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRV 120 >gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284] gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ + + L K GY+VV+ +G A +KV E L+L D+++P++DG+E Sbjct: 3 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDGLE 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +AR+ ++ ++ +T + ++KPF R+LV V L ++ Sbjct: 63 VARQVRAKH-NIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQD 120 >gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++ +L+ +D+++MR + L AG+ + +G A + + P +L D++MP+ Sbjct: 1 MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + R E D+ ++F+T + KPF +L+ + +L Sbjct: 61 DGFAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|95931140|ref|ZP_01313865.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132830|gb|EAT14504.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 454 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + IL+ +D+ ++R + L G++V + +GA+A D V EE L+L DI MP MDGI Sbjct: 2 KHILVVDDERNIRESITGILQDEGFQVTTSCDGATALDAVTEEKPDLVLLDIWMPGMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E + DL+V+ ++G A + + + KP L L+ ++ L + Sbjct: 62 ETLTQIRNQYDDLQVIMMSGHATIETAVTATKLGAYDFIEKPLSLEKLLVCIHNALKV 119 >gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1] gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1] gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1] Length = 235 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV +G A KV E L+L D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+AR+ + + D+ ++ +T + ++KPF R+LV V L + Sbjct: 62 EVARQVRK-NYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 119 >gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 51/117 (43%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ MR L L GY V++ +G +V E L+L D++MP++DG Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L L + ++ +T + L KPF +L+ V +L Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRR 119 >gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 256 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M Q IL+ ED+ ++ L L GY V + +GASA ++ L++ DI++P M Sbjct: 18 MQQATILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIMLPGM 77 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ RR + D D+ ++F+T + + L+KPF R+L V +L Sbjct: 78 DGFEVCRRIQQ-DFDVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILR 136 Query: 120 I 120 Sbjct: 137 R 137 >gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88] gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 MN+ I++ +D+ ++R + L GY V+ NG A + + +E L++ DI+MP M Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DGIE + E ++ ++ ++ ++KPF+ +L+ V L Sbjct: 61 DGIEACTKIREEK-NMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD + + L K G+EVV +NG + E L++ DI++P+ DG E Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKKDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R ++ ++ ++ +T + KPF ++L+ + +L Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|302343346|ref|YP_003807875.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301639959|gb|ADK85281.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfarculus baarsii DSM 2075] Length = 449 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN +IL+ +D+ + L L GY+V + +NG +A E+ L++TD+ MP M Sbjct: 1 MN-RILVVDDEKNYLVVLEALLRGEGYDVRTADNGQAALRLADEDEPDLVITDMKMPRMS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIEL + PDL V+ +T + V ++ + KPF R+L+ + L + Sbjct: 60 GIELIQALRVDHPDLPVIVMTAYGTVENAVEAMKLGATDYIIKPFENRELLLTTEKTLRM 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 230 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+++IL+ ED++ + L +G+EV N+G K E F L++ D+++P +D Sbjct: 1 MSKRILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLPGVD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ R+ + ++ ++ ++KPF +LV V L Sbjct: 61 GFEICRQIRSQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 119 >gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60 ++IL+ ED+D +R F++ L +AGY+VV N+G +A K E F + + DI+MP +D Sbjct: 2 KRILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 G+ + + + +L ++ +T ++KPF +LV V+ L Sbjct: 62 GLTVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSL 118 >gi|311745310|ref|ZP_07719095.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] gi|126577843|gb|EAZ82063.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] Length = 230 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M++ K+L+ EDD ++ L + L GYE C +G ++K +++ + L L DI+MP+ Sbjct: 1 MSKAKLLVVEDDPNLGDILQEYLEMKGYEPTLCRDGEEGWNKFKKDKYDLCLLDIMMPKK 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG LA+ ++ +L ++F+T + ++KPF + +L+ V +L Sbjct: 61 DGFTLAKEIKKVQDNLPILFLTAKNQKDDIIEGLKIGADDYITKPFSMEELLLRVTAILR 120 Query: 120 I 120 Sbjct: 121 R 121 >gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus 132] gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754] gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus MR1] gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796] gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus] gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus] gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus subsp. aureus TW20] gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus aureus 04-02981] gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754] gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796] gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED133] gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus T0131] gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21189] gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21172] gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21193] Length = 241 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 61 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119 >gi|163868485|ref|YP_001609694.1| response regulator [Bartonella tribocorum CIP 105476] gi|240850709|ref|YP_002972109.1| response regulator [Bartonella grahamii as4aup] gi|161018141|emb|CAK01699.1| response regulator [Bartonella tribocorum CIP 105476] gi|240267832|gb|ACS51420.1| response regulator [Bartonella grahamii as4aup] Length = 120 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 90/116 (77%), Positives = 108/116 (93%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++ILLAEDD+DMRRFL+KAL +AGYEV +NG SAY++++EEPFSLLLTDIVMPEMDGI Sbjct: 2 KRILLAEDDNDMRRFLVKALERAGYEVADFDNGISAYERLQEEPFSLLLTDIVMPEMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 ELARRATE+DPDL+VMFITGFAAVALN +S+AP +AKVLSKPFHLR+LVNEV ++L Sbjct: 62 ELARRATEIDPDLRVMFITGFAAVALNSNSDAPPDAKVLSKPFHLRELVNEVEKIL 117 >gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD + FL L K GY+V NG A DK+R E F+L+L DI+MP++D Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E +R L ++ ++F+T + ++KPF L +L V+ +L Sbjct: 61 GFEAIKRIRRLT-NIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119 >gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 234 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L Y+V + +G A DKVR EPF ++ D+++P + G+ Sbjct: 2 KKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ R+ E +M +T ++KPF R+++ + + Sbjct: 62 DVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAI 116 >gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D+ +RR L L GY+VV+ ++G A R L++ D++MP++DG Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVMMPKLDGYG 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA ++KPF ++L + +L Sbjct: 67 VCQELRKE-SDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRR 122 >gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 259 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ ++L+ EDD +R L +AG+ V + +G R L++ D+++P +D Sbjct: 34 MDGRVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLLPGLD 93 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R + + ++ +T L KPF L +LV V LL Sbjct: 94 GLQVCREIRRSN-AVPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRR 152 >gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 243 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 56/118 (47%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L + L + G+EV+ +G + + E L++ D++MP DG+ Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLMMPGEDGLS 69 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + RR + ++ +T L KPF+ R+L+ V+ +L + Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRR 127 >gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603] gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + + E+ F L++ D++MP MD Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMD 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 66 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 >gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 239 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +LL +D++ + R L L K GY+ +G SA E F +L DI++P++D Sbjct: 1 MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ +R +M ++ + L+KPF R+L+ V +L Sbjct: 61 GIEVCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRR 120 >gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621] gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621] gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + + E+ F L++ D++MP MD Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803] gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + + E+ F L++ D++MP MD Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614] gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614] Length = 236 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ + AL G++V + + G+ A +E ++ DI++P+ DG+E Sbjct: 12 RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR DP + V+F+T AV ++KPF L +LV + L+ Sbjct: 72 VLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRR 128 >gi|262404218|ref|ZP_06080773.1| putative two-component response regulator [Vibrio sp. RC586] gi|262349250|gb|EEY98388.1| putative two-component response regulator [Vibrio sp. RC586] Length = 236 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LGKAG+EV+ NGA + + L++ DI+MP DG Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIMMPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ + + ++ +T ++K F R+L+ + +L Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRS 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|262165983|ref|ZP_06033720.1| putative two-component response regulator [Vibrio mimicus VM223] gi|262025699|gb|EEY44367.1| putative two-component response regulator [Vibrio mimicus VM223] Length = 236 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LGKAG+EV+ NGA + + L++ DI+MP DG Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIMMPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ + + ++ +T ++K F R+L+ + +L Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRS 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+AED++++ L L K GY+V+ ++G A ++ + L++ DI+MP+MDG E+ Sbjct: 6 ILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKMDGYEV 65 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R+ ++ ++F++ + ++KPF +LV VN L Sbjct: 66 TRQVRAQY-NMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLRR 120 >gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 223 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD + + L K G+EVV +NG + E L++ DI++P+ DG E Sbjct: 2 KILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R ++ ++ ++ +T + KPF ++L+ + +L Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +DD+++ + L +GY+ C +G A + E L+L DI++P +DG++ Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + + D + ++ +T + + KPF ++L+ V +L N Sbjct: 67 VLKWIRK-DSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124 >gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] Length = 235 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 56/115 (48%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L K GY+V S +G A + + F +L D+++P MDGI Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDGI 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E+ +R + ++ ++ +T LSKPF R+++ + + Sbjct: 62 EITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAI 116 >gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD ++R + L + GYEV+ NG A +++ L + D++MP+MDG Sbjct: 3 KILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVMMPKMDGWA 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L E D+ ++ +T A + KPF +L+ V LL Sbjct: 63 LCSALRESF-DMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKR 118 >gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 227 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +DD +R L ++L GY+V ++G A + +++ D++MP +DG+E Sbjct: 2 RVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMPGLDGLE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR D+ V+ +T AV+ L KPF L +L+ + L+ Sbjct: 62 TCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRR 118 >gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 234 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ +R + AL KAG +V+ +G A + + L++ D+ MPE D Sbjct: 1 MAHRILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAADRPDLIVLDVGMPEFD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+++ R + D+ ++F++ ++KPF R+LV VN +L Sbjct: 61 GLDVCREIRK-GSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRR 119 >gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208] Length = 222 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD + + + L G+ V+ +G A V E L + D++MP MDG EL Sbjct: 1 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGFEL 60 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 61 CQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 118 >gi|325298032|ref|YP_004257949.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324317585|gb|ADY35476.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1336 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D++D R F+ +L Y V +NG A K++E L+++D++MP MDG EL Sbjct: 1088 LLVVDDNEDFRLFMRHSLELQ-YRVEVASNGQEALSKIQELQPDLVISDVMMPGMDGNEL 1146 Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 R + + V+ +T AV ++KPF++ LV + +L+ + Sbjct: 1147 CRLIKGDKRTAHIPVILLTARQAVESKVKGLETGADDYVTKPFNMTVLVLRIRKLIEL 1204 >gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 223 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD + + L K G+EVV +NG + E L++ DI++P+ DG E Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGYE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R ++ ++ ++ +T + KPF ++L+ + +L Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|291280089|ref|YP_003496924.1| hypothetical protein DEFDS_1712 [Deferribacter desulfuricans SSM1] gi|290754791|dbj|BAI81168.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 470 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 3/120 (2%) Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 M++ +IL+ +D+D +R L L YEVV +NG A + + E+ F ++TDI MP Sbjct: 1 MSENKTRILIVDDEDYVRDSLKIILLAENYEVVDVDNGYRALELLNEKYFDFVITDIKMP 60 Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 EMDGI L ++ E P++ V+ +TGF ++ + ++KPF + DL+N++++ Sbjct: 61 EMDGITLLKKIKEKYPEIPVIVMTGFPSIDNAIAALKEGAFDYVTKPFKVEDLINKLHKA 120 >gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ EDD +R L +L AG+ VV GA A VRE+P L++ D+++P+ DG Sbjct: 4 SERLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDG 63 Query: 62 IELARRATELDP-----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ RR P V+F+T A ++KPF+L +LV + Sbjct: 64 FEVVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRA 123 Query: 117 LLTI 120 +L Sbjct: 124 ILRR 127 >gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens TC1] gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens TC1] Length = 239 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+L+ +D+ ++R L +L AG+EVV+ NG A L + D+++P+MDG Sbjct: 12 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVMLPDMDGFT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR V+F+T ++KPF L ++V + +L Sbjct: 72 VTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128 >gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 225 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q IL+A+D+ ++ L L GY V G A +VR+ F ++ D+++P M G Sbjct: 4 QHILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGF 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E R D+ ++F++ A ++KPF ++V V LL Sbjct: 64 EACRAIRAF-SDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRR 120 >gi|239905949|ref|YP_002952688.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795813|dbj|BAH74802.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 640 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 64/117 (54%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+K+LL +DD+ +R L ++ GY+V + G A + S++LTDI MP MD Sbjct: 1 MNEKVLLVDDDEAIREVLSLSIADLGYDVETAPGGREALELCATFKPSIVLTDIKMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 GIEL R LDP+++V+ I+G + L +S + L+KP L ++R Sbjct: 61 GIELLSRVKALDPEIEVIMISGHGDMELAIESLKRQALDFLTKPVRDELLTASLHRA 117 >gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL N1-067] gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL S4-171] Length = 238 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M++ ++L+ +D+D +RR L L + Y + ++G A D + ++L D++MP Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGIE+ R E V+ +T A + KPF R++V V +L Sbjct: 61 KDGIEVCRELRE-YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 QKIL+ +DD+++ + L K +E N+G A V L+L D+++P MDG Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLPGMDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R ++ ++ ++ V + KPF ++LV V +L Sbjct: 64 YEVCREVR-HKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRR 121 >gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ + RFL GY V +G S + E + L+L DI++P +D Sbjct: 1 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGID 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ ++ E D+ V+ +T V + ++KPF + +L V L Sbjct: 61 GFEVLKKIRE-HSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRK 119 Query: 121 K 121 K Sbjct: 120 K 120 >gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 231 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59 M +IL+ +DD +R L ++L +GYEV + +G A K+ ++ D++MP + Sbjct: 1 MAMQILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRL 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 DG+E + D+ ++ +T AV D + KPF L +L+ + L Sbjct: 61 DGLETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRAL 118 >gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] Length = 230 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD D+ A+ KAG+E + ++G +A + ++E L++ DI +PEMD Sbjct: 1 MPARILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R ++ ++ ++F+T L+KPF R+LV + +L Sbjct: 61 GLEVCREIRKI-SEVPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAILKR 119 >gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ ED+ + RFL L GY+V ++G K + EPF L++ DI++P ++G Sbjct: 3 KKKILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHING 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 IE+ R+ + + ++ +T V ++KPF + +L+ + L Sbjct: 63 IEVLRKIRQ-TSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALK 119 >gi|332093887|gb|EGI98941.1| acetoacetate metabolism regulatory protein atoC [Shigella boydii 5216-82] Length = 299 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 230 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ ED+ + RFL GY V +G S + E + L+L DI++P +D Sbjct: 2 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGID 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ ++ E D+ V+ +T V + ++KPF + +L V L Sbjct: 62 GFEVLKKIRE-HSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRK 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|78222609|ref|YP_384356.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193864|gb|ABB31631.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 458 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ MR FL L + GY V + A + + + L+++D+ MP +D Sbjct: 1 MEIRILVVDDELSMREFLAILLKREGYAVDQADCAEKALEFLDSITYDLVISDVKMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI L R E PD V+ +T F+ ++ ++KPF + ++ V L Sbjct: 61 GIALLGRIKENSPDTAVLMMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVRNALEK 120 Query: 121 KN 122 ++ Sbjct: 121 RD 122 >gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 252 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G++V + G A +E +++ DI++P+ DG+E Sbjct: 22 RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLE 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR P + V+F+T AV ++KPF L ++V + LL Sbjct: 82 VMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRR 138 >gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 232 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL EDD + L L K GYEV +G A +K + L+L DI++PE DG Sbjct: 2 KKILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + ++ ++ ++ +T ++KPF ++L+ + +L Sbjct: 62 EVCKEIRKI-SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRR 118 >gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] Length = 236 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LGK G+EV+ NG++ ++++ L++ DI+MP DG Sbjct: 4 NKQILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHHPDLIILDIMMPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ + + ++ +T ++K F R+L+ + +L Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRS 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 245 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ +R + L +G+EV+ N A + L+++DI+MP MDG + Sbjct: 17 RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTTQPQLIISDIMMPGMDGYQ 76 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +LDP L V+F+T A L KPF +LV V+ L+ Sbjct: 77 FLAQVRKLDPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 135 >gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD Sbjct: 1 MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + ++ +T ++KPF R++V V +L Sbjct: 61 GMEVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120 >gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M Q IL+ +D++ + L L + G++V + +G +A DK E F ++ D+++PEMD Sbjct: 1 MAQHILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ ++ + ++ +T L+KPF R++V V +L Sbjct: 61 GLEVCKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRR 120 >gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 261 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++++L+ +D+ + L L +AG+ V++ +G K EE ++ D+++P++D Sbjct: 24 MSKRVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLMLPKLD 83 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++V V +L Sbjct: 84 GIEVCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 143 >gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 62/119 (52%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 K+++ EDD +RR L L GY VVS +G A ++ + E L++ DI++P+MDG E Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +A+ +L PD+ ++ +T L+KPF +L+ + LL KN Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124 >gi|317051506|ref|YP_004112622.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] gi|316946590|gb|ADU66066.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] Length = 487 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 63/115 (54%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D+D MR L + L +AGYEV++ +G + K++ ++TD+ MP MDG+ Sbjct: 6 KTVLVVDDEDQMRLALRETLTRAGYEVITAFDGNNGLSKLQNNSIDAVITDLRMPVMDGM 65 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 E ++A + P L ++ +T +A V D+ + KPF + + + R+ Sbjct: 66 EFLQKALQEKPGLPIVLMTAYATVNTAVDAMKSGAFDYIMKPFSPEVIESTLERV 120 >gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 235 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ ED+ ++ L +L AG+ V + NG A V+ L++ D+++P+MDG + Sbjct: 8 RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGFD 67 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D V+F+T A ++KPF L ++V + +L Sbjct: 68 VVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRR 124 >gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++++L+ ED+ +R L +L AG+ V GA A VRE+ L++ D+++P+ DG Sbjct: 4 SERLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDG 63 Query: 62 IELARRATELDP-----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 E+ RR P V+F+T A ++KPF+L +LV + Sbjct: 64 FEVVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRA 123 Query: 117 LLTI 120 +L Sbjct: 124 ILRR 127 >gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ D++MP MD Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVMMPNMD 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ + E ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 66 GIEVCMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 >gi|90577311|ref|ZP_01233122.1| putative DNA-binding response regulator [Vibrio angustum S14] gi|90440397|gb|EAS65577.1| putative DNA-binding response regulator [Vibrio angustum S14] Length = 243 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ +DD ++R L + L K G+EV + G + L+L DI+MP DG Sbjct: 4 SKQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIMMPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + + D+ ++ +T + ++KPF R L+ + +L Sbjct: 64 FTLCQHIRK-TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILRR 121 >gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis] Length = 239 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D Sbjct: 1 MNKKILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ ++ + ++ +T ++KPF R++ V +L Sbjct: 60 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 119 >gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae] gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae] Length = 231 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N IL+A+DD ++ + L K GY V+ ++G D ++ +P LL+ DI+MP+MDG Sbjct: 3 NITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIMMPKMDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ RR E ++ ++F++ + ++KPF +LV VN L Sbjct: 63 FEVTRRIREKH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQLRR 120 >gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8] gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8] Length = 247 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +DD + + L K GYEV+ +G A +E + + DI++P +DG Sbjct: 11 KKKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDG 70 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 EL R+ E + V+F++ ++KPF +R+L+ V + Sbjct: 71 FELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 130 Query: 120 I 120 Sbjct: 131 R 131 >gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 234 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L L +A Y+V+S +NG A +V+ ++ D+++P++D Sbjct: 1 MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E ++ + + + ++ +T ++ L+KPF ++L++ + +L Sbjct: 61 GVEATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR 120 Query: 121 KN 122 N Sbjct: 121 TN 122 >gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 222 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEM 59 MN KIL+ +D+ +R+ + L + GY V +G +A D L++ D++MP+M Sbjct: 1 MNNKILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG +L + +L + ++ +T + + +SKPF + L VN LL Sbjct: 61 DGWQLCKEVRKL-SKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 59/117 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ EDD ++ L +L AG++V + +G++A + ++ L++ D+++P++DG E Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 68 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R E V+F+T A ++KPF L +L + +L Sbjct: 69 VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125 >gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 247 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++ILL ED+ + + L +AG++V +G +A E L+L D ++P +DG Sbjct: 15 NRRILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRMLPGLDG 74 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ RR + + V+ +T ++KPF R+LV V +L Sbjct: 75 VEVCRRLRQTMS-VPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRR 132 >gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249] gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249] Length = 232 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + + PD +F T + + + KPF R+LV VN +L Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 >gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1] gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1] gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 235 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GYEV +G A KV E L+L D+++P+MDG+ Sbjct: 2 KKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 E+AR+ + + D+ ++ +T + ++KPF R+LV V L + Sbjct: 62 EVARQVRK-NYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 119 >gi|254473068|ref|ZP_05086466.1| chemotaxis response regulator [Pseudovibrio sp. JE062] gi|211957789|gb|EEA92991.1| chemotaxis response regulator [Pseudovibrio sp. JE062] Length = 118 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 91/118 (77%), Positives = 108/118 (91%), Gaps = 1/118 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +ILLAEDD+DMR+FL KAL KAG+ VVS +NG SAY+++ EEPF+LLLTDIVMPEMD Sbjct: 1 MS-RILLAEDDNDMRQFLSKALEKAGHTVVSFDNGKSAYERICEEPFALLLTDIVMPEMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 GIELAR+AT+LDPDLKVMFITGFAAVALNPDS AP++AKVLSKPFHL+DLV EV ++L Sbjct: 60 GIELARKATQLDPDLKVMFITGFAAVALNPDSKAPQDAKVLSKPFHLKDLVREVEKML 117 >gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +D+ ++R + L + G+ V+ ++G +A R++P L++ D+++P++ G+E+ Sbjct: 4 ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKVTGLEV 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR + D V+ +T + + KPF R+LV V +L Sbjct: 64 CRRL-QSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRR 118 >gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23] gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23] gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W] gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II] Length = 235 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + L L Y+V + +G A DKVR EPF ++ D+++P + G+ Sbjct: 2 KKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 ++ R+ E +M +T ++KPF R+++ + + Sbjct: 62 DVTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAI 116 >gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 221 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++LL +DD +R L L + GYEVV +G A K+ + SL++ D+++P + G E Sbjct: 3 RVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKIPQA--SLVVLDLMLPRLSGWE 60 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +AR P+L V+ +T ++KPF R++V V LL Sbjct: 61 VARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRR 117 >gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 275 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E Sbjct: 54 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 113 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +R ++ ++ +T ++KPFH +L + +L N Sbjct: 114 CKRIRSF-SNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 170 >gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451] gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451] Length = 236 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LGKAG+EV+ NGA + + + L++ DI+MP DG Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ + + ++ +T ++K F R+L+ + +L Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRS 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] Length = 236 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 N++IL+ +D+ ++R L LGKAG+EV+ NGA + + + L++ DI+MP DG Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 L ++ + + ++ +T ++K F R+L+ + +L Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRS 122 Query: 122 N 122 Sbjct: 123 Q 123 >gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144] gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144] gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis FRI909] Length = 241 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E+ +G AY+ E ++ +L D+++PEMD Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119 >gi|218705751|ref|YP_002413270.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UMN026] gi|293405687|ref|ZP_06649679.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1412] gi|298381369|ref|ZP_06990968.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1302] gi|300897713|ref|ZP_07116110.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|218432848|emb|CAR13742.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli UMN026] gi|291427895|gb|EFF00922.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1412] gi|298278811|gb|EFI20325.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1302] gi|300358553|gb|EFJ74423.1| response regulator receiver domain protein [Escherichia coli MS 198-1] Length = 461 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|89072346|ref|ZP_01158925.1| putative DNA-binding response regulator [Photobacterium sp. SKA34] gi|89051878|gb|EAR57330.1| putative DNA-binding response regulator [Photobacterium sp. SKA34] Length = 243 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +++IL+ +DD ++R L + L K G+EV + G + L+L DI+MP DG Sbjct: 4 SKQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIMMPGDDG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L + + D+ ++ +T + ++KPF R L+ + +L Sbjct: 64 FTLCQHIRK-TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILRR 121 >gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 684 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 10/132 (7%) Query: 1 MNQK--------ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT 52 M+++ IL+ +D D R L L GYEV +G A + V +P L+L Sbjct: 1 MSERQSQAIKGDILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPPDLILL 60 Query: 53 DIVMPEMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110 DI MPEMDG E+ +R E ++ V+F++ V + ++KPF L ++ Sbjct: 61 DIKMPEMDGYEVCQRLKADEKTAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLEEV 120 Query: 111 VNEVNRLLTIKN 122 + V LT+++ Sbjct: 121 IARVKTQLTLRH 132 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILLAED+ ++ + L + GY+ +NG D + + + ++L D+ MPEMDG+ Sbjct: 562 RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAISRQSYDVILMDVQMPEMDGLT 621 Query: 64 LARRATELDPDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 R + ++ +T A +SKP DL+ V +++ ++ Sbjct: 622 ATRYICQNYSQRPWIIALTANAMQEDRETCLKAGMDDYISKPIRQADLI-RVFKMIPLRQ 680 Score = 73.6 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61 +++L+ +D+ + L + G S +G A + ++E F + + D MPEM+G Sbjct: 416 KRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWLNQKEAFDVAIIDRQMPEMNG 475 Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 + L + +L ++ +T + A L KP L L N + ++L Sbjct: 476 LTLGLQIHNQSGFKELPLVLLTPIGKMTTKTSLIERHFAACLPKPIKLGQLYNTLTQVLG 535 Query: 120 IK 121 + Sbjct: 536 RQ 537 >gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17] gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17] Length = 234 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ R L+ L + GY+V + +G + + L+L D+++P +DG Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR E + ++ +T +A ++KP+ R+L+ + +L Sbjct: 63 LCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRR 118 >gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+ +R L ++L GY + +G A +K L++ D++MP MDG+ Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDVLMPRMDGLT 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR + V+ +T V L KPF L +L+ + LL + Sbjct: 72 AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130 >gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] Length = 225 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ +G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51] gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ ++ L L + G++V + NG A +E P+ L+L D+++P + G E Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLMLPGLSGEE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + ++ + ++ +T + + +SKPF R++V V +L Sbjct: 62 ICKEIRKI-SAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRR 117 >gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+ + L + + G+EV +G A K R F L++ DI++P++D Sbjct: 1 MADRILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLPKLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + R + ++ +T ++KPF R+L+ V +L Sbjct: 61 GFTVCREIRRF-STVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRR 119 >gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator PHOP [Mycobacterium tuberculosis H37Rv] gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator PHOP [Mycobacterium bovis AF2122/97] gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 94_M4241A] gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T92] gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T17] gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis 210] gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN R506] gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN V2475] gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium tuberculosis H37Rv] gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium bovis AF2122/97] gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CDC1551A] gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis W-148] gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] Length = 247 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138 >gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] Length = 224 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KILL ED+ + RF+ L GYEV + +G E F +LL D+++P ++ Sbjct: 1 MPKKILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSIN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ RR + ++ +T AV + KPF + +L+ + +L Sbjct: 61 GIEICRRIR-TQSQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR 119 >gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 238 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M++ ++L+ +D+D +RR L L + Y + ++G A D + ++L D++MP Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPG 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DGIE+ R E V+ +T A + KPF R++V V +L Sbjct: 61 KDGIEVCRELRE-YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 238 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + +L+ +DD + + + L + G V +G A EEP L++ D++MP +D Sbjct: 7 MGRYVLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEPPDLVVLDLMMPGLD 66 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ RR P L V+ +T A ++KPF R+LV + +L Sbjct: 67 GIEVCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRR 126 >gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] Length = 240 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 >gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 247 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL +D+ +R + L +G+EV+ N A + L+++DI+MP MDG + Sbjct: 19 RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTAQPQLIISDIMMPGMDGYQ 78 Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + +L+P L V+F+T A L KPF +LV V+ L+ Sbjct: 79 FLAQLRKLEPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 137 >gi|78067197|ref|YP_369966.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77967942|gb|ABB09322.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 280 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D Sbjct: 40 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 99 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+ R+ D+ V+ +T A L KPF+ R+L+ V +L Sbjct: 100 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 159 Query: 121 K 121 + Sbjct: 160 R 160 >gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus ATCC 53653] gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus ATCC 53653] Length = 290 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ + L AL G+EV + +GA A RE ++ D+++P+MDG+ Sbjct: 66 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPDMDGLT 125 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R P++ V+F+T AV ++KPF L ++V + LL Sbjct: 126 VLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRR 182 >gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] Length = 232 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KILL EDD + L L K GYEV +G A +K + L+L DI++PE DG Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ + ++ ++ ++ +T ++KPF ++L+ + +L Sbjct: 62 EVCKEIRKI-SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRR 118 >gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42] gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42] Length = 231 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ EDD D+ L ++L ++GYEV++ +G A V + L++ DI+MP + Sbjct: 1 MTHRILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLV-NDSLDLVILDIMMPGIS 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + + ++ ++F+T ++ + ++KPF +L V L Sbjct: 60 GIETCQHIRK-TSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118 >gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ ED+ +R L +AG+ V+ +NG + R E L++ D+ +P MD Sbjct: 1 MNATILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A R + D+ ++ +T + + + KPF R+LV + +L Sbjct: 61 GMEVAARLRQE-SDVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRR 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|75761471|ref|ZP_00741436.1| Two-component response regulator yycF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491032|gb|EAO54283.1| Two-component response regulator yycF [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 173 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ R + ++ ++ +T + ++KPF R+L+ V L Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635] gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635] Length = 244 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ +IL+ +D+D +RR L L + +E+ +NG AYD E ++ +L D+++PEMD Sbjct: 4 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++A + E ++ +T + + KPF R++V V LL Sbjct: 64 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 122 >gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 233 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 65 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 66 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 >gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] Length = 232 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + + PD +F T + + + KPF R+LV VN +L Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 >gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRGKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 241 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ K+L+ ED+ + R L L + GYE ++GA + F L++ DI++P ++ Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIMLPGLN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G E+ + + ++ +T A ++KPF + +L+ V+ +L Sbjct: 61 GFEILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRR 120 >gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037] Length = 232 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + + PD +F T + + + KPF R+LV VN +L Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 >gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ +DD +R + L G+EV+ ++G A + L++ D++MP MDG EL Sbjct: 4 ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVMMPNMDGWEL 63 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + DL + +T A L KPF +L+ V LL Sbjct: 64 CAEIRDHY-DLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKR 118 >gi|85858813|ref|YP_461015.1| sigma-54 dependent transcriptional regulator [Syntrophus aciditrophicus SB] gi|85721904|gb|ABC76847.1| sigma-54 dependent transcriptional regulator [Syntrophus aciditrophicus SB] Length = 473 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + +IL+ +DD MR L + L GY + + +NG A K R+ F ++TD+ MP M Sbjct: 3 MKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGM 62 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 G+E+ + ++ P+ V+ IT + V ++ + + KPF L D+ V ++ Sbjct: 63 GGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVMA 122 >gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M+++ +L+ +D+++MR + L AG+ + +G A + + P +L D++MP+ Sbjct: 1 MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG + R E D+ ++F+T + KPF +L+ + +L Sbjct: 61 DGFAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 248 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +RR L L GY VV+ +G A + L++ D++MP++DG Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVMMPKLDG 67 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118] gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] Length = 236 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+ +D+ + + L K GY+V + +G A +V+E L+L D+++P++DG+ Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLMLPKIDGL 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E+AR + D+ ++ +T + ++KPF R+LV V L ++ Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQS 120 >gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 277 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +L+ +D+ +RR L+ L AGY VV +G A + E L++ D+++P++DG Sbjct: 31 KATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLPKLDG 90 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR + ++F++ A++ L KPF ++L + +L Sbjct: 91 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 148 >gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU121] Length = 241 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +IL+ +D+D +RR L L + +E ++G AY E ++ +L D+++PEMD Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+A + E D ++ +T + + KPF R++V V LL Sbjct: 61 GIEVATQLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119 >gi|297568325|ref|YP_003689669.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924240|gb|ADH85050.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 464 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ +D+ +R + L G+ ++ NG + + EP L+L DI MP +DG Sbjct: 6 QRRILVVDDEAGIRESMAGILADEGFVALTAENGEQGLELLENEPVDLVLLDIWMPGVDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ R +L P L V+ I+G + + + KP ++ +N L + Sbjct: 66 MEILGRLRDLYPHLPVIMISGHGTIETAVQATRMGAYDFIEKPLSYDKVILAINNALRL 124 >gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ IL+ +DD + L + L GY V + N+G + + F L++ D++MP +D Sbjct: 1 MSSNILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVMMPGLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ + E DL V+ +T V L KPF + +L+ + LL Sbjct: 61 GWQVCGQIREYY-DLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRR 119 >gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 231 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 IL+ +D+ +R + + L +AG+ VV +G +A ++ R +++ DI++P +DG+ Sbjct: 5 TILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPVLDGLA 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D ++ +T A + L+KPF R+LV V LL Sbjct: 65 VCRRLRTF-SDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRR 120 >gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 253 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+A+D+ +RR L L GY VV+ +G A + E L++ D++MP ++G Sbjct: 14 EKILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGY 73 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + ++ + D+ ++ +T VA L+KPF ++L ++ +L Sbjct: 74 GVCQKIRAI-SDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130 >gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|323171898|gb|EFZ57542.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli LT-68] Length = 461 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 241 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +D++++R+ L +L GYEV + +G +A D+ R L+ D++MP MDG Sbjct: 15 KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR + +F++ +V + ++KPF L ++V + LL Sbjct: 75 LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRR 131 >gi|170019466|ref|YP_001724420.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli ATCC 8739] gi|169754394|gb|ACA77093.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli ATCC 8739] Length = 461 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|260062158|ref|YP_003195238.1| C4-dicarboxylate transport transcriptional regulatory protein [Robiginitalea biformata HTCC2501] gi|88783720|gb|EAR14891.1| C4-dicarboxylate transport transcriptional regulatory protein [Robiginitalea biformata HTCC2501] Length = 389 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ ED+ +RR L+K L + Y+V NGA +K++++ + L+L DI MP+MDG Sbjct: 5 RILVIEDEAAIRRVLVKILTEENDAYQVEEAENGAEGLEKLKKQEYDLVLCDIKMPKMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +E+ + P+ + I+G + + +SKP L L+ V L K Sbjct: 65 VEVLEAGRKSKPETPFIMISGHGDLDTAVQTMRMGAFDYISKPPDLNRLLTTVRNALDRK 124 >gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 1/116 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 +L+ +D+ M F+ L G V + NG A +KVREE ++L DI+MP MDG E Sbjct: 9 VLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIMMPVMDGFEA 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 RR + V+ +T + KPF R+LV+ + +L Sbjct: 69 LRRIRSF-SQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRR 123 >gi|323188052|gb|EFZ73347.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli RN587/1] Length = 461 Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 232 Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + + PD +F T + + + KPF R+LV VN +L Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 >gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] Length = 229 Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +D+DD+ F+ GY V++ +NG A + ++ ++L DI+MP +D Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD-IDIILLDIMMPNID 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G ++ ++ ++F++ + + + KPF +++L V L Sbjct: 60 GFQVCQKIRNKVS-CPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118 Query: 121 K 121 + Sbjct: 119 E 119 >gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD ++ L L K GY V N+G A K E L+L DI+MP++DG + Sbjct: 5 KILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIMMPKLDGWQ 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R + D ++ IT + + KPF +++V V ++ Sbjct: 65 VCREIRK-KSDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRR 120 >gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis] gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein Length = 243 Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GYEV++ +NG A R+E SL++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T V + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122 >gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 232 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 +KIL+A+D+ + +FL L + G+ V + NG A + LL+ D++MP+MDG Sbjct: 4 KKILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVMMPKMDGY 63 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 E+ R+ E ++ ++F+T + L+KPF +L+ + +L Sbjct: 64 EVCRKIREQ-SNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRR 120 >gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 228 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ R L+ L + GY+V + +G + + L+L D+++P +DG Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR E + ++ +T +A ++KP+ R+L+ + +L Sbjct: 63 LCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRR 118 >gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 272 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +D+ +RR L L GY VV+ +G A + L++ D++MP++DG Sbjct: 32 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDG 91 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T VA + KPF ++L + +L Sbjct: 92 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 149 >gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 ILL ED+++++ L L GYEV + +NG +A V+ E F L++ DI++PEMDGI + Sbjct: 9 ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIMLPEMDGIAV 68 Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + ++ ++F++ + A ++KPF+L +L+ V +L+ +KN Sbjct: 69 CENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLI-VKN 125 >gi|91775264|ref|YP_545020.1| two component, sigma54 specific, Fis family transcriptional regulator [Methylobacillus flagellatus KT] gi|91775408|ref|YP_545164.1| two component, sigma54 specific, Fis family transcriptional regulator [Methylobacillus flagellatus KT] gi|91709251|gb|ABE49179.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacillus flagellatus KT] gi|91709395|gb|ABE49323.1| two component, sigma54 specific, transcriptional regulator, Fis family [Methylobacillus flagellatus KT] Length = 456 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL +DD D+ + + L AGY+V++ N A ++ SL++TD+ MP MDG Sbjct: 5 TKKILTVDDDPDILKLMGMRLQAAGYQVITATNAEEALSQIAISRPSLVITDLRMPGMDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + L + DP L V+ +T ++ D+ L+KPF + L+ +V L I Sbjct: 65 LALFDAIHQSDPALPVIMVTAHGSIPEAVDATQRGVFGFLTKPFDSKSLLQQVEAALRI 123 >gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] Length = 244 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 55/118 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L + L + G+EV +G + + E L++ D++MP DG+ Sbjct: 11 KILVVDDDARIRDLLRRYLTQEGFEVFLAEDGKALTRILLRESVDLIVLDLMMPGEDGLS 70 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + RR + ++ +T L KPF+ R+L+ +N +L + Sbjct: 71 ICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRR 128 >gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 232 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + + PD +F T + + ++KPF R+LV VN +L Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120 >gi|331663726|ref|ZP_08364636.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA143] gi|284922212|emb|CBG35294.1| acetoacetate metabolism regulator (two-component system response regulator) [Escherichia coli 042] gi|331059525|gb|EGI31502.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA143] Length = 461 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074] gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074] gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074] Length = 246 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 52/120 (43%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY +G A +K L++ DI MP MDG+ Sbjct: 13 QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDIQMPRMDGL 72 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR + ++ +T V L KPF L +L V LL + Sbjct: 73 TAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 132 >gi|229590586|ref|YP_002872705.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229362452|emb|CAY49358.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25] Length = 409 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +L+ +D+ +R+ L L GY+ ++ +G A V ++P L+L DI+MP MDG E Sbjct: 7 TLLIVDDEPQVRKLLETLLQHEGYQTLTAGSGEEALQLVAQQPPDLILLDIMMPGMDGYE 66 Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 +A + E + ++ ++ + + + + +SKP +L V LL +K Sbjct: 67 VASQLKGDETTAGIPIIMLSALSEPSARVNGLEAGAEEFISKPVERVELWLRVRNLLRLK 126 >gi|198274194|ref|ZP_03206726.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135] gi|198272869|gb|EDY97138.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135] Length = 1312 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64 IL+ ED+ D+R ++ + + YEV++ NG +D + + +++++DI+MP MDGIEL Sbjct: 1057 ILVVEDNRDIREYVRSSFEEM-YEVLTAANGKEGWDIAQSQIPNIIISDIMMPVMDGIEL 1115 Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 R E + V+ +T + + A ++KPF R L + +N +L + Sbjct: 1116 CRHIKEDMRTSHIPVILLTAKDTLQDKEEGYAAGADSFITKPFSARLLNSRINNILENR 1174 >gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08] gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07] gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08] gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD Sbjct: 1 MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIMMPKMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE+ R+ E ++ ++ ++ + L+KPF+ +L V L+ Sbjct: 61 GIEVCRKVRESL-NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119 >gi|215487439|ref|YP_002329870.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli O127:H6 str. E2348/69] gi|215265511|emb|CAS09913.1| fused response regulator of ato operon, in two-component system with AtoS [Escherichia coli O127:H6 str. E2348/69] Length = 461 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712] Length = 269 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ EDD + + L +AG V +G A + E L++ D+++P +DG+E Sbjct: 12 RILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLMLPGLDGLE 71 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 + RR P + V+ +T ++KPF R+LV V +L Sbjct: 72 VCRRLRATGP-VPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVL 125 >gi|320160319|ref|YP_004173543.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994172|dbj|BAJ62943.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 407 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +KIL+ +DD MR + K L G+E + NG A +K L++ D+ MPEMD Sbjct: 1 MPEKILVVDDDALMRLMVTKTLSTEGFEFLEAENGVQAVEKAIAHQPDLIIMDVNMPEMD 60 Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G E +R + + ++ +T + V + KPF +L VN LL Sbjct: 61 GYEACQRIRSNPITSAIPIILVTSLSTVEDKIKGFDSGADDYIPKPFDPIELTMRVNVLL 120 Query: 119 TI 120 Sbjct: 121 RR 122 >gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319] gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319] Length = 238 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q++LL +D+D +RR L L K GY + +G A +K + L++ D++MP +DGI Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 E ++ E ++ +T + KPF R++V V LL + Sbjct: 65 EACKQIREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 123 >gi|218778777|ref|YP_002430095.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218760161|gb|ACL02627.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 452 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 56/121 (46%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L L G+EVV+ NG A ++ + L+L DI MP MD Sbjct: 1 MFPSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E ++ + P + V+ ITG + + + KP + +V +N L Sbjct: 61 GLETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNF 120 Query: 121 K 121 + Sbjct: 121 R 121 >gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] Length = 231 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 KIL+ +DD +R L ++L GY V+ +G A + EE L + D++MP+ DG++ Sbjct: 2 KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGLD 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + R DL ++ +T +V L KPF L +L+ L Sbjct: 62 VCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRR 118 >gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN+ IL+ +D++ MR + L K G+ V+ NG A +E L++ DI+MP MD Sbjct: 1 MNKTILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIMMPVMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + ++ + V+ +T A ++KPF + LV +V LL Sbjct: 61 GWTTCKEIRKI-SQVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKR 119 >gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B str. Eklund 17B] Length = 223 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M + IL+ ED+ +R + L K G+ + ++G + +E L++ DI+MP+M+ Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ + E+ ++ V+F+T + ++KPF + LV +V LL Sbjct: 61 GLEMLEKLREV-SNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLKR 119 >gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] Length = 240 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 75 VLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 >gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED+ +R + L KAG++V + +G +A + +P L++ DI++P +DG + Sbjct: 3 RILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIMLPTIDGFD 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + R + ++ +T ++KPF +R+L+ V LL + Sbjct: 63 VCRHIRR-SSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLRRR 119 >gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp. avium ATCC 25291] gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] Length = 239 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea] gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea] Length = 243 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +KIL+ +D+ +RR L L GYEV++ +NG A R+E SL++ D++MP++DG Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDG 64 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + + + D+ ++ +T V + KPF ++L + +L Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122 >gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 MN K IL+ +D+ ++ + L K G++V++ +G SA D E L++ D+++P+ Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 M G E+ R + + ++ +T A + + L+KPF +R+LV V LL Sbjct: 61 MTGEEVCNRIRAV-SSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALL 119 Query: 119 TI 120 Sbjct: 120 RR 121 >gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 234 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 63/120 (52%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M++ IL+ +D+ + + L +A Y+VVS +NG A + V++ ++ D+++P++D Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE ++ + D + ++ +T + ++KPF ++L++ + +L Sbjct: 61 GIEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR 120 >gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas elongata DSM 2581] gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB [Halomonas elongata DSM 2581] Length = 229 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 + +L+ +D+ +R + AL A Y V+ +N +A+ + + L+L D +MP GI Sbjct: 4 KTVLIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWMMPGTSGI 63 Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 ELARR E ++ ++ +T + ++KPF R+LV + +L Sbjct: 64 ELARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLRR 123 >gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 234 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 55/119 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + KIL+ +DD +R L ++L GY V+ +G A + EE L + D++MP+ DG Sbjct: 3 HMKILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +++ R DL ++ +T +V L KPF L +L+ L Sbjct: 63 LDVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRR 121 >gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 59/122 (48%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P + Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120 Query: 121 KN 122 N Sbjct: 121 SN 122 >gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] Length = 233 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ R L+ L + GYEV + G + L+L D+++P +DG Sbjct: 3 RILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLPGIDGTT 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR E + ++ +T + ++KP+ R+L+ + +L Sbjct: 63 LCRRIREQ-SRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRR 118 >gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 225 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 ++IL+ +DD + + + L G+ V+ +G A V E L + D++MP MDG Sbjct: 2 KQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGF 61 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 EL ++ PD+ V+ +T A+A ++KPF +LV + LL N Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 >gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ ED+ +R L +AG+ V+ ++G + R E L++ D+ +P MD Sbjct: 1 MNATILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNLPGMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E+A R + D D+ ++ +T + + + KPF R+LV V +L Sbjct: 61 GMEVAARLRQ-DSDVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRR 119 Query: 121 K 121 + Sbjct: 120 R 120 >gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L Sbjct: 61 GIEACMKIRE-DRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] Length = 240 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 +IL+ +D+ +R L AL AG+ V+ +N A+ + + L+L D +MP G Sbjct: 10 KHRILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMMPGTTG 69 Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 +EL RR EL ++ +T A + KPF R+L++ VN +L Sbjct: 70 LELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLR 129 Query: 120 I 120 Sbjct: 130 R 130 >gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 Q +LLAEDD +R L +AL GY V + +G A + P +LL D++MP +DG Sbjct: 12 TQTVLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMPGIDG 71 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +++ R ++ +T A + KPF + ++ + LL Sbjct: 72 LQVCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 130 >gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 239 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 60/117 (51%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L AL G++VV+ +G A +V LL+ DI++P+ DG+E Sbjct: 7 RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIMLPDGDGLE 66 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR E ++ V+F+T A ++KPF + +LV + +L Sbjct: 67 LCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRR 123 >gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] Length = 234 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M IL+ +D+ + L L +A Y+V+S +NG A +V+ ++ D+++P++D Sbjct: 1 MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G+E ++ + + + ++ +T ++ L+KPF ++L++ + +L Sbjct: 61 GVEATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR 120 Query: 121 KN 122 N Sbjct: 121 TN 122 >gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58 M++ I L+ +D+D +RR L L + GY V NG A +K E+ + +L DI+MPE Sbjct: 1 MSENISVLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPE 60 Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 DG+E+ E ++ +T A + KPF R++V V +L Sbjct: 61 KDGLEVCAEIRE-RAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAIL 119 Query: 119 TIKN 122 Sbjct: 120 RRSQ 123 >gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M+ KIL+ +DD D+R + L G + + A + E+ F L+L D++MP MD Sbjct: 1 MSDKILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIE + E + ++ ++ + LSKPF+ +L+ V L Sbjct: 61 GIEACLKIREEQ-TIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRR 119 >gi|195977456|ref|YP_002122700.1| DNA-binding response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974161|gb|ACG61687.1| DNA-binding response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 228 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KILL +D+ ++ + L +AGY V + ++G+ A + ++ + L+++D++MP MD Sbjct: 1 MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIISDVMMPNMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G + PD +FIT + S + +SKPF R+LV V +L Sbjct: 61 GYDFIGEVLLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNR 120 >gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 + +KIL+ +D++ + + L K GY+ + NG A V+EE L+L D+++P MD Sbjct: 2 LQEKILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMD 61 Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 G ++ + + + V+ IT ++KPF +R+LV V +L Sbjct: 62 GYDVCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVL 121 Query: 119 TI 120 Sbjct: 122 RR 123 >gi|331647875|ref|ZP_08348967.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M605] gi|281179312|dbj|BAI55642.1| two-component response regulator [Escherichia coli SE15] gi|330912051|gb|EGH40561.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli AA86] gi|331043599|gb|EGI15737.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M605] Length = 461 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 M + IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 DG E+ R+ + ++F++ + ++KPF +LV VN L Sbjct: 61 DGYEVTRQIRGKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 120 I 120 Sbjct: 120 R 120 >gi|224370278|ref|YP_002604442.1| two-component response regulator [Desulfobacterium autotrophicum HRM2] gi|223692995|gb|ACN16278.1| two-component response regulator [Desulfobacterium autotrophicum HRM2] Length = 244 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 ++IL+ ED+ + + L GY V +G + + R+ L++ DI++P +DG Sbjct: 6 KKRILVIEDEQHIAEGIKLNLNMQGYGVRIAPDGVAGLELWRQWHPDLIILDIMLPMIDG 65 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + ++ D L V+ ++ L+KPF L + + V+RLL K Sbjct: 66 LTVLKKIRSEDEKLPVLILSAKGNAEDRVRGLRCGVDDYLAKPFDLDEFLLRVDRLLARK 125 Query: 122 N 122 + Sbjct: 126 S 126 >gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB] gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 243 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +DD +R L++ LG+ G+EV + +G E + L++ D++MP DG Sbjct: 7 HHHILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLMMPGEDG 66 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 + + RR ++ +T L KPF+ R+L+ ++ +L + Sbjct: 67 LTICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQ 126 >gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor A3(2)] gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%) Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 Q+IL+ +D+ +R L ++L GY+ +GA A +K L++ DI MP MDG+ Sbjct: 15 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGL 74 Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 ARR ++ +T V L KPF L +L + LL + Sbjct: 75 TAARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 134 >gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 228 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M KIL+ +DD+++ + L +GY C +G SA E L+L D+++P MD Sbjct: 4 MLGKILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVMLPHMD 63 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GI++ + + D + V+ +T + + KPF ++L+ + +L Sbjct: 64 GIDVLKWIRK-DSETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122 Query: 121 KN 122 N Sbjct: 123 YN 124 >gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 234 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ ED++ R L+ L + GY+V + +G + + L+L D+++P +DG Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 L RR E + ++ +T +A ++KP+ R+L+ + +L Sbjct: 63 LCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRR 118 >gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM 18228] gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM 18228] Length = 228 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MN IL+ ED++ + L L + GY+ +GA ++ F L+++D+++P+MD Sbjct: 1 MN-TILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHTFQLVISDVILPKMD 59 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 G EL + +++P + ++ +T + + + KPF R+L + LL Sbjct: 60 GFELCKEIRKINPSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLLKR 119 >gi|116750532|ref|YP_847219.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699596|gb|ABK18784.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 458 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 55/118 (46%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 + IL+ +DD + + L + V+ +G A D ++ L++TD+ MP M G Sbjct: 4 KRTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGMGG 63 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 ++L L V+F+T + ++ + L+KPF RDLV +V +L Sbjct: 64 MDLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILR 121 >gi|323967662|gb|EGB63074.1| sigma-54 interaction domain-containing protein [Escherichia coli M863] gi|327252489|gb|EGE64148.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli STEC_7v] Length = 461 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 + + V+ +T +A V ++ + KPF L +L V R L +++ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 >gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 ++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 + RR D +F+T ++ ++KPF L ++V + +L Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 229 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61 KIL+ EDD +R + + L GY+V++ G A +V++E L++ D+ +P++DG Sbjct: 3 TAKILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLDG 62 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 +E+ R+ + V+ ++ A ++KPF +LV V +L Sbjct: 63