RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780312|ref|YP_003064725.1| response regulator receiver
protein [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein
AtoC; Provisional.
Length = 457
Score = 73.7 bits (181), Expect = 1e-14
Identities = 36/119 (30%), Positives = 59/119 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI
Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGI 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T +A V ++ + KPF L +L V R L ++
Sbjct: 65 KALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123
>gnl|CDD|162545 TIGR01818, ntrC, nitrogen regulation protein NR(I). This model
represents NtrC, a DNA-binding response regulator that
is phosphorylated by NtrB and interacts with sigma-54.
NtrC usually controls the expression of glutamine
synthase, GlnA, and may be called GlnL, GlnG, etc.
Length = 463
Score = 71.7 bits (176), Expect = 4e-14
Identities = 37/114 (32%), Positives = 57/114 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L KAL +AGYEV + N AS + LL+TD+ MP DG++L
Sbjct: 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDL 60
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + P L V+ +T + + + + L KPF L + V V R L
Sbjct: 61 LPQIKKRHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114
>gnl|CDD|184141 PRK13557, PRK13557, histidine kinase; Provisional.
Length = 540
Score = 69.7 bits (171), Expect = 2e-13
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP-EM 59
+ IL+ +D D+ L GY + +NG A + + P LL TD++MP M
Sbjct: 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGM 474
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+G+ LAR A P +KV+ TG+A ++ +L+KP+ +L V +L
Sbjct: 475 NGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVL 533
>gnl|CDD|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD;
Provisional.
Length = 221
Score = 59.3 bits (144), Expect = 2e-10
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A ++ E ++L + DI MP MDG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDINMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVA-----LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ +R + L V+ +T +AVA LN ++ L KPF L +L + LL
Sbjct: 62 VLQRLRKRGQTLPVLLLTARSAVADRVKGLNVGAD-----DYLPKPFELEELDARLRALL 116
>gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR;
Provisional.
Length = 441
Score = 57.3 bits (138), Expect = 9e-10
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L DDD +++AL + GY V N+G A ++VRE+ F L+L D+ M EMDGI
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67
Query: 65 ARRATELDPDLKVMFITGFAAV 86
+ L+P + V+ +T +++V
Sbjct: 68 LKEIKALNPAIPVLIMTAYSSV 89
>gnl|CDD|128724 smart00448, REC, cheY-homologous receiver domain. CheY regulates
the clockwise rotation of E. coli flagellar motors.
This domain contains a phosphoacceptor site that is
phosphorylated by histidine kinase homologues.
Length = 55
Score = 57.2 bits (139), Expect = 1e-09
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
+IL+ +DD +R L L + GYEV +G A + ++EE L+L DI+MP
Sbjct: 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55
>gnl|CDD|182968 PRK11107, PRK11107, hybrid sensory histidine kinase BarA;
Provisional.
Length = 919
Score = 57.2 bits (139), Expect = 1e-09
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 7 LAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+A DD+ LI AL + E VV C++G A ++ ++ PF L+L DI MP MDGI
Sbjct: 671 MAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRPFDLILMDIQMPGMDGI--- 727
Query: 66 RRATEL 71
RA EL
Sbjct: 728 -RACEL 732
>gnl|CDD|181815 PRK09390, fixJ, response regulator FixJ; Provisional.
Length = 202
Score = 56.5 bits (137), Expect = 2e-09
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+DD+ MR L L AG+EV + + D + F ++TD+ MP +DGIEL RR
Sbjct: 10 DDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRL 69
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
L V+ +TG V L ++ + KPF
Sbjct: 70 KARGSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPF 106
>gnl|CDD|131209 TIGR02154, PhoB, phosphate regulon transcriptional regulatory
protein PhoB. PhoB is a DNA-binding response regulator
protein acting with PhoR in a 2-component system
responding to phosphate ion. PhoB acts as a positive
regulator of gene expression for phosphate-related
genes such as phoA, phoS, phoE and ugpAB as well as
itself. It is often found proximal to genes for the
high-affinity phosphate ABC transporter (pstSCAB;
GenProp0190) and presumably regulates these as well.
Length = 226
Score = 54.6 bits (132), Expect = 6e-09
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L KAGY+VV +G A + E L+L D ++P
Sbjct: 1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTS 60
Query: 61 GIELARR 67
GIEL RR
Sbjct: 61 GIELCRR 67
>gnl|CDD|182950 PRK11083, PRK11083, DNA-binding response regulator CreB;
Provisional.
Length = 228
Score = 54.2 bits (131), Expect = 8e-09
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q ILL ED+ + L+ AL G+ V G A DK+R++P L++ D+ +P++
Sbjct: 1 MQQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFIT 81
G EL R+ P L V+F+T
Sbjct: 61 SGFELCRQLLAFHPALPVIFLT 82
>gnl|CDD|182842 PRK10923, glnG, nitrogen regulation protein NR(I); Provisional.
Length = 469
Score = 54.1 bits (130), Expect = 9e-09
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ + +DD +R L +AL AG + NG + + + +LL+DI MP MDG+
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLA 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA------KVLSKPFHLRDLVNEVNRL 117
L ++ + P L V+ +T + D +A +A L KPF + + V V R
Sbjct: 65 LLKQIKQRHPMLPVIIMTAHS------DLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118
Query: 118 LT 119
++
Sbjct: 119 IS 120
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component
regulatory system with EvgA; Provisional.
Length = 1197
Score = 52.8 bits (126), Expect = 2e-08
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D R L + L GY+V +G A KV + + LL+TD+ MP MDG EL
Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020
Query: 65 ARRATELDPDLKVMFITGFA 84
R+ E + L + +T A
Sbjct: 1021 TRKLREQNSSLPIWGLTANA 1040
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component
regulatory system with RcsB and YojN; Provisional.
Length = 924
Score = 51.5 bits (124), Expect = 5e-08
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D RR L LG GY+ + N+G A + + + ++LTD+ MP MDG
Sbjct: 803 MILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLTDVNMPNMDGYR 862
Query: 64 LARRATELDPDLKVMFITGFA 84
L +R +L L V+ +T A
Sbjct: 863 LTQRLRQLGLTLPVIGVTANA 883
>gnl|CDD|185070 PRK15115, PRK15115, response regulator GlrR; Provisional.
Length = 444
Score = 48.7 bits (116), Expect = 3e-07
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +DD + + L L GY VV+ +G A + E L+++D+ M EMDG++L
Sbjct: 8 LLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLRMDEMDGMQL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKP 104
++ P + V+ +T ++ PD+ A V L+KP
Sbjct: 68 FAEIQKVQPGMPVIILTAHGSI---PDAVAATQQGVFSFLTKP 107
>gnl|CDD|181966 PRK09581, pleD, response regulator PleD; Reviewed.
Length = 457
Score = 48.4 bits (116), Expect = 5e-07
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L Y V++ ++GA A E ++L D++MP MD
Sbjct: 1 MTARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQPDIILLDVMMPGMD 60
Query: 61 GIELARR 67
G E+ RR
Sbjct: 61 GFEVCRR 67
>gnl|CDD|185245 PRK15347, PRK15347, two component system sensor kinase SsrA;
Provisional.
Length = 921
Score = 48.1 bits (115), Expect = 6e-07
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D + R + L + G +V + +G A + R+ F L+L DI MP +DG+E
Sbjct: 692 QILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHRFDLVLMDIRMPGLDGLE 751
Query: 64 LARR----ATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDL 110
+ LDPD M I A A + + K A + L+KP L L
Sbjct: 752 TTQLWRDDPNNLDPD--CM-IVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQL 802
>gnl|CDD|183148 PRK11466, PRK11466, hybrid sensory histidine kinase TorS;
Provisional.
Length = 914
Score = 47.6 bits (113), Expect = 9e-07
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
++LL ED+ +R + L +G +VV+ N A A + + EPF+ L D +P+ DGI
Sbjct: 683 RLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGI 742
Query: 63 ELARRATELDPDLKVMFITGFAA 85
LAR+ + P L ++ GF+A
Sbjct: 743 TLARQLAQQYPSLVLI---GFSA 762
>gnl|CDD|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator. Members
of this family contain a response regulator receiver
domain (Pfam:PF00072) and an associated transcriptional
regulatory region (Pfam:PF00486). This group is
separated phylogenetically from related proteins with
similar architecture and contains a number of proteins
associated with heavy metal resistance efflux systems
for copper, silver, cadmium, and/or zinc. Most members
encoded by genes adjacent to genes for encoding a member
of the heavy metal sensor histidine kinase family
(TIGRFAMs:TIGR01386), its partner in the two-component
response regulator system.
Length = 218
Score = 47.5 bits (113), Expect = 1e-06
Identities = 30/114 (26%), Positives = 54/114 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +L + L ++GY V + +NG ++ + L++ D+++P MDG ++
Sbjct: 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQI 60
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ V+F+T +VA L KPF +L+ V LL
Sbjct: 61 LQTLRRSGKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLL 114
>gnl|CDD|182102 PRK09836, PRK09836, DNA-binding transcriptional activator CusR;
Provisional.
Length = 227
Score = 47.2 bits (112), Expect = 1e-06
Identities = 28/115 (24%), Positives = 54/115 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G +
Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ R + + ++ +T + L KPF +L+ V LL
Sbjct: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116
>gnl|CDD|183013 PRK11173, PRK11173, two-component response regulator;
Provisional.
Length = 237
Score = 45.8 bits (109), Expect = 3e-06
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ ED+ + R +K++ +A GY+V +GA + + E +L++ DI +P +G+
Sbjct: 5 HILIVEDEL-VTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGL 63
Query: 63 ELARRATELDPDLKVMFITG 82
LAR E ++ +MF+TG
Sbjct: 64 LLARELRE-QANVALMFLTG 82
>gnl|CDD|181883 PRK09468, ompR, osmolarity response regulator; Provisional.
Length = 239
Score = 45.0 bits (107), Expect = 5e-06
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60
N KIL+ +DD +R L + L + G++V S N A D++ E F L++ D+++P D
Sbjct: 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAAN-AEQMDRLLTRESFHLMVLDLMLPGED 63
Query: 61 GIELARR 67
G+ + RR
Sbjct: 64 GLSICRR 70
>gnl|CDD|182665 PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR;
Provisional.
Length = 240
Score = 44.7 bits (106), Expect = 7e-06
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+IL+ ED+ + + LI L A Y ++G VR+ P L+L D+++P D
Sbjct: 9 NTPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTPPDLILLDLMLPGTD 68
Query: 61 GIELAR 66
G+ L R
Sbjct: 69 GLTLCR 74
>gnl|CDD|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR;
Provisional.
Length = 232
Score = 44.0 bits (104), Expect = 9e-06
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 33/133 (24%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ V+ ++G A D + ++ LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKN 58
Query: 61 GIE---------------LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
GI+ L R +ELD L + L D L KPF
Sbjct: 59 GIDTLKELRQTHQTPVIMLTARGSELDRVL---------GLELGADD-------YLPKPF 102
Query: 106 HLRDLVNEVNRLL 118
+ R+LV + +L
Sbjct: 103 NDRELVARIRAIL 115
>gnl|CDD|183172 PRK11517, PRK11517, transcriptional regulatory protein YedW;
Provisional.
Length = 223
Score = 43.7 bits (103), Expect = 1e-05
Identities = 18/63 (28%), Positives = 39/63 (61%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61
Query: 64 LAR 66
+ +
Sbjct: 62 ILQ 64
>gnl|CDD|163083 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS. This
protein, TorS, is part of a regulatory system for the
torCAD operon that encodes the pterin molybdenum
cofactor-containing enzyme trimethylamine-N-oxide (TMAO)
reductase (TorA), a cognate chaperone (TorD), and a
penta-haem cytochrome (TorC). TorS works together with
the inducer-binding protein TorT and the response
regulator TorR. TorS contains histidine kinase ATPase
(pfam02518), HAMP (pfam00672), phosphoacceptor
(pfam00512), and phosphotransfer (pfam01627) domains and
a response regulator receiver domain (pfam00072).
Length = 968
Score = 43.6 bits (103), Expect = 1e-05
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++LL ED++ + L + G++V +G SA + + F L L DI +P+ DG+
Sbjct: 703 QRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDINLPDGDGV 762
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVNRLL 118
L ++ + + F+A N D A L+KP L + +L
Sbjct: 763 TLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVIL 821
>gnl|CDD|183591 PRK12555, PRK12555, chemotaxis-specific methylesterase;
Provisional.
Length = 337
Score = 42.9 bits (102), Expect = 2e-05
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 4 KILLAEDDDDMRRFLIKAL-GKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+I + D L +AL +EVV +GA A ++ +P ++L D+ MP MDG
Sbjct: 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQPPDVILMDLEMPRMDG 61
Query: 62 IELARRATELDP 73
+E RR P
Sbjct: 62 VEATRRIMAERP 73
>gnl|CDD|182711 PRK10766, PRK10766, DNA-binding transcriptional regulator TorR;
Provisional.
Length = 221
Score = 42.3 bits (100), Expect = 3e-05
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ R L + GY V +GA + ++ + L+L DI +P D
Sbjct: 1 MSYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINLPGED 60
Query: 61 GIELARRATELDPDLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113
G+ L R + ++ +TG + + D ++KP LR+L+
Sbjct: 61 GLMLTRELRS-RSTVGIILVTGRTDSIDRIVGLEMGADD-------YVTKPLELRELLVR 112
Query: 114 VNRLL 118
V LL
Sbjct: 113 VKNLL 117
>gnl|CDD|182612 PRK10643, PRK10643, DNA-binding transcriptional regulator BasR;
Provisional.
Length = 222
Score = 41.9 bits (99), Expect = 4e-05
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + + LI AL GY + A + +SL++ D+ +P+ DG+
Sbjct: 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLGLPDEDGLH 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNP-----DSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L RR + L V+ +T A L D A L KPF L +L + L+
Sbjct: 62 LLRRWRQKKYTLPVLILT--ARDTLEDRVAGLDVGAD---DYLVKPFALEELHARIRALI 116
>gnl|CDD|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY;
Provisional.
Length = 129
Score = 39.2 bits (91), Expect = 3e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
K L+ +D MRR + L + G+ V +G A +K++ F +++D MP MD
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMD 64
Query: 61 GIELAR--RATELDPDLKVMFITGFA 84
G+EL + RA L V+ +T A
Sbjct: 65 GLELLKTIRADGAMSALPVLMVTAEA 90
>gnl|CDD|182660 PRK10701, PRK10701, DNA-binding transcriptional regulator RstA;
Provisional.
Length = 240
Score = 38.9 bits (91), Expect = 4e-04
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KI+ EDD ++ + L K +V G A + E L+L DI++P DG
Sbjct: 1 MNKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIMLPGKDG 60
Query: 62 IELAR 66
+ + R
Sbjct: 61 MTICR 65
>gnl|CDD|182956 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 38.4 bits (90), Expect = 5e-04
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 22 LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81
L K G V G A + + + L+L DI +P+M G+++AR E P + +
Sbjct: 545 LEKLGNSVDVAMTGKEALEMFDPDEYDLVLLDIQLPDMTGLDIARELRERYPREDLPPL- 603
Query: 82 GFAAVALNPDSNAPKNAK---------VLSKP 104
VAL +N K+ K VLSKP
Sbjct: 604 ----VALT--ANVLKDKKEYLDAGMDDVLSKP 629
>gnl|CDD|182387 PRK10336, PRK10336, DNA-binding transcriptional regulator QseB;
Provisional.
Length = 219
Score = 36.8 bits (85), Expect = 0.002
Identities = 29/115 (25%), Positives = 50/115 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L K G+ V G + + P+ ++ D+ +P MDG +
Sbjct: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ R E V+ +T A+A + L KPF L ++ + L+
Sbjct: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM 116
>gnl|CDD|131922 TIGR02875, spore_0_A, sporulation transcription factor Spo0A.
Spo0A, the stage 0 sporulation protein A, is a
transcription factor critical for the initiation of
sporulation. It contains a response regulator receiver
domain (pfam00072). In Bacillus subtilis, it works
together with response regulator Spo0F and the
phosphotransferase Spo0B, both of which are missing from
at least some sporulating species and thus not part of
the endospore forming bacteria minimal gene set. Spo0A,
however, is universal among endospore-forming species.
Length = 262
Score = 35.9 bits (83), Expect = 0.002
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+I++A+D+ + L + L + EVV +NG A + ++E+ +++ DI+MP +DG
Sbjct: 4 RIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQPDVVVLDIIMPHLDG 63
Query: 62 IELAR--RATELDPDLKVMFITGFA-------AVALNPDSNAPKNAKVLSKPFHLRDLVN 112
I + EL +V+ ++ F AVAL D + KPF L L
Sbjct: 64 IGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADY-------YVLKPFDLEILAA 116
Query: 113 EVNRL 117
+ +L
Sbjct: 117 RIRQL 121
>gnl|CDD|182154 PRK09935, PRK09935, transcriptional regulator FimZ; Provisional.
Length = 210
Score = 35.6 bits (82), Expect = 0.003
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 38 AYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG-----FAAVALNPDS 92
D +R P L++ DI +P DG +R ++ +KV+F++ +A A+ +
Sbjct: 41 TIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGA 100
Query: 93 NAPKNAKVLSKPFHLRDLVNEVNRLLT 119
N +SK D+ + V +L+
Sbjct: 101 NG-----FVSKCNDQNDIFHAVQMILS 122
>gnl|CDD|163070 TIGR02915, PEP_resp_reg, putative PEP-CTERM system response
regulator. Members of this protein family share
full-length homology with (but do not include) the
acetoacetate metabolism regulatory protein AtoC. These
proteins have a Fis family DNA binding sequence
(pfam02954), a response regulator receiver domain
(pfam00072), and sigma-54 interaction domain
(pfam00158).
Length = 445
Score = 34.3 bits (79), Expect = 0.007
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 32/140 (22%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-----EM 59
+L+ EDD +++ L + A YE+ + SA VR +++ D+ +P
Sbjct: 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHEPAVVTLDLGLPPDADGAS 58
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPD-SNA--------------PKNAKVLS-- 102
+G+ ++ + PD KV+ ITG N D NA P + VL
Sbjct: 59 EGLAALQQILAIAPDTKVIVITG------NDDRENAVKAIGLGAYDFYQKPIDPDVLKLI 112
Query: 103 --KPFHLRDLVNEVNRLLTI 120
+ FHL L E RL +
Sbjct: 113 VDRAFHLYTLETENRRLQSA 132
>gnl|CDD|179106 PRK00742, PRK00742, chemotaxis-specific methylesterase;
Provisional.
Length = 354
Score = 34.4 bits (80), Expect = 0.007
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 12 DD---MRRFLIKALGK-AGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
DD MRR + + L EVV + +G A +K+++ ++ D+ MP MDG++
Sbjct: 10 DDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLNPDVITLDVEMPVMDGLDALE 69
Query: 67 RATELDPDLKVMF 79
+ L P VM
Sbjct: 70 KIMRLRPTPVVMV 82
>gnl|CDD|182652 PRK10693, PRK10693, response regulator of RpoS; Provisional.
Length = 303
Score = 34.2 bits (79), Expect = 0.009
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 34 NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81
NG A + + L++ D+ MP M+GIE V+ I+
Sbjct: 5 NGVDALELLGGFTPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVIS 52
>gnl|CDD|185267 PRK15369, PRK15369, two component system sensor kinase SsrB;
Provisional.
Length = 211
Score = 33.9 bits (78), Expect = 0.010
Identities = 18/86 (20%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 1 MNQKILLAEDDD---DMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVM 56
N KILL +D + + + ++ + Y++V +NG Y+ R+ +++ D+ +
Sbjct: 2 KNYKILLVDDHELIINGIKNMLAPYPR--YKIVGQVDNGLEVYNACRQLEPDIVILDLGL 59
Query: 57 PEMDGIELARRATELDPDLKVMFITG 82
P M+G+++ + + P + ++ +T
Sbjct: 60 PGMNGLDVIPQLHQRWPAMNILVLTA 85
>gnl|CDD|182277 PRK10161, PRK10161, transcriptional regulator PhoB; Provisional.
Length = 229
Score = 33.9 bits (77), Expect = 0.011
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
>gnl|CDD|182755 PRK10816, PRK10816, DNA-binding transcriptional regulator PhoP;
Provisional.
Length = 223
Score = 33.9 bits (78), Expect = 0.011
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +R L L AG++V + + A + E + + D+ +P+ DG+
Sbjct: 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAA-----VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L RR D L ++ +T + L+ ++ ++KPFH+ +++ + L+
Sbjct: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGAD-----DYVTKPFHIEEVMARMQALM 116
>gnl|CDD|182522 PRK10529, PRK10529, DNA-binding transcriptional activator KdpE;
Provisional.
Length = 225
Score = 32.1 bits (73), Expect = 0.039
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ ED+ +RRFL AL G V + L++ D+ +P+ DG
Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60
Query: 62 IELAR 66
IE R
Sbjct: 61 IEFIR 65
>gnl|CDD|181897 PRK09483, PRK09483, response regulator; Provisional.
Length = 217
Score = 32.0 bits (73), Expect = 0.044
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 26 GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81
G +VV G A R ++L D+ MP + G+E R+ PD+K++ +T
Sbjct: 26 GIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIMLT 82
>gnl|CDD|163499 TIGR03787, marine_sort_RR, proteobacterial dedicated sortase
system response regulator. This model describes a
family of DNA-binding response regulator proteins,
associated with an adjacent histidine kinase
(TIGR03785) to form a two-component system. This system
co-occurs with, and often is adjacent to, a
proteobacterial variant form of the protein sorting
transpeptidase called sortase (TIGR03784), and a single
target protein for the sortase. We give this protein
the gene symbol pdsR, for Proteobacterial Dedicated
Sortase system Response regulator.
Length = 227
Score = 31.3 bits (71), Expect = 0.061
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM------ 56
++I + ED+ +R AL + GY+V + + SA + F L D+ +
Sbjct: 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSA-----MQAFRQRLPDLAIIDIGLG 55
Query: 57 PEMD-GIELARRATELDPDLKVMFIT 81
E+D G L + L L ++F+T
Sbjct: 56 EEIDGGFMLCQDLRSLSATLPIIFLT 81
>gnl|CDD|177655 PLN00016, PLN00016, RNA-binding protein; Provisional.
Length = 378
Score = 31.2 bits (71), Expect = 0.072
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 1 MNQKILLAEDDDDMRRF----LIKALGKAGYEVVSCNNGASAYDKVREEPFS 48
+K+L+ + F L K L KAG+EV G K+++EPFS
Sbjct: 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFS 102
>gnl|CDD|183278 PRK11697, PRK11697, putative two-component response-regulatory
protein YehT; Provisional.
Length = 238
Score = 31.0 bits (71), Expect = 0.079
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 28 EVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDL--KVMFITGFA 84
E+V C+N A + ++ DI MP + G+EL LDP+ ++F+T F
Sbjct: 28 EIVGECSNAIEAIGAIHRLKPDVVFLDIQMPRISGLEL---VGMLDPEHMPYIVFVTAFD 84
Query: 85 AVAL 88
A+
Sbjct: 85 EYAI 88
>gnl|CDD|173619 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 29.9 bits (67), Expect = 0.17
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 32 CNNGASAYDKVREEPF------SLLLTDIVMPEMDGI--ELARRATELDPDLKVMFITGF 83
N S Y + + PF LLL + I ELA A+ +D V +
Sbjct: 333 RTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAI 392
Query: 84 AAVALNPDSNAPKNAKVL 101
A++A+ DS AP A +L
Sbjct: 393 ASLAIKVDSVAPDCANLL 410
>gnl|CDD|182619 PRK10651, PRK10651, transcriptional regulator NarL; Provisional.
Length = 216
Score = 28.5 bits (64), Expect = 0.44
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKA-GYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMD 60
ILL +D +R + + + A VV +NG + L+L D+ MP M+
Sbjct: 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMN 66
Query: 61 GIELARRATELDPDLKVMFIT 81
G+E + E +++ +
Sbjct: 67 GLETLDKLREKSLSGRIVVFS 87
>gnl|CDD|172377 PRK13856, PRK13856, two-component response regulator VirG;
Provisional.
Length = 241
Score = 28.2 bits (63), Expect = 0.52
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD MR +++ L ++V + + + E +++ D+ + DG+E+
Sbjct: 4 VLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDLNLGREDGLEI 63
Query: 65 ARRATELDPDLKVMFITG 82
R D+ ++ I+G
Sbjct: 64 VRSLAT-KSDVPIIIISG 80
>gnl|CDD|178599 PLN03029, PLN03029, type-a response regulator protein;
Provisional.
Length = 222
Score = 28.1 bits (62), Expect = 0.54
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 21/86 (24%)
Query: 6 LLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKV--------------------RE 44
+LA DD + R LI+ L K + Y+V + ++G+ A + +E
Sbjct: 11 VLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQE 70
Query: 45 EPFSLLLTDIVMPEMDGIELARRATE 70
+L++TD MP M G +L ++ E
Sbjct: 71 VEVNLIITDYCMPGMTGYDLLKKIKE 96
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 27.2 bits (60), Expect = 1.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITG 82
L IV P D IE A E D D+KV+ + G
Sbjct: 26 LNTIVPPMPDEIEAAIGLAERDQDIKVIVLRG 57
>gnl|CDD|148074 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 26.5 bits (59), Expect = 1.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 105 FHLRDLVNEVNRLLTIKN 122
+ +RDL +E+N+L K
Sbjct: 72 YQIRDLNDEINKLFREKR 89
>gnl|CDD|148166 pfam06398, Pex24p, Integral peroxisomal membrane peroxin.
Peroxisomes play diverse roles in the cell,
compartmentalising many activities related to lipid
metabolism and functioning in the decomposition of toxic
hydrogen peroxide. Sequence similarity was identified
between two hypothetical proteins and the peroxin
integral membrane protein Pex24p.
Length = 355
Score = 26.6 bits (59), Expect = 1.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 92 SNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
SN P+ + L F +++++ R+LT N
Sbjct: 10 SNPPQLSSRLGAIFPFLLILDKLLRILTWTN 40
>gnl|CDD|179569 PRK03359, PRK03359, putative electron transfer flavoprotein FixA;
Reviewed.
Length = 256
Score = 26.3 bits (58), Expect = 1.8
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 16 RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV-MPEMDGIELARRAT----- 69
L A KAG++++ C +G+S + + LL+ +I+ +P ++G+ T
Sbjct: 102 SALAAAAQKAGFDLILCGDGSS---DLYAQQVGLLVGEILNIPAINGVSKIISLTDDTLT 158
Query: 70 ---ELDPDLKVMFITGFAAVALNPDSNAPK 96
EL+ +++ + I A +A++ D N+P+
Sbjct: 159 VERELEDEVETLSIPLPAVIAVSTDINSPQ 188
>gnl|CDD|180747 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 26.6 bits (59), Expect = 1.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDK 41
MR +LIK L Y V+S G YD+
Sbjct: 1 MRSYLIKPLLGQPYPVISHGKGVYLYDQ 28
>gnl|CDD|182454 PRK10430, PRK10430, DNA-binding transcriptional activator DcuR;
Provisional.
Length = 239
Score = 26.2 bits (58), Expect = 2.3
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 10 DDDDM-----RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
DDD M RR++ + G S A + P L+L DI M + +G++L
Sbjct: 8 DDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
E V+ I+ A A DS L KPF
Sbjct: 68 LPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPF 108
>gnl|CDD|182168 PRK09958, PRK09958, DNA-binding transcriptional activator EvgA;
Provisional.
Length = 204
Score = 26.0 bits (57), Expect = 2.8
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 10 DDDDMRRFLIKA-LGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
DD + I+ L K E+++ G SA +V +++ D+ +P ++GI++
Sbjct: 7 DDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 25.7 bits (56), Expect = 2.9
Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV 42
+ +K+++ E+ ++MRR +K L +S + G A++ +
Sbjct: 420 LVRKVMVEEEGEEMRR-KVKKLRDTAEMSLSIDGGGVAHESL 460
>gnl|CDD|151672 pfam11230, DUF3029, Protein of unknown function (DUF3029). Some
members in this family of proteins are annotated as
ykkI. Currently no function is known.
Length = 487
Score = 25.7 bits (57), Expect = 3.1
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 16 RFLIKALGKAGYEVVSCNN----GASAYDKVR 43
K G+ GY +VSC N G AY VR
Sbjct: 200 PMHAKDFGEKGYGIVSCYNSLPLGGGAYTLVR 231
>gnl|CDD|178951 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 25.5 bits (57), Expect = 3.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
F F A++ D N P+ L+ L +L E+NR L K+
Sbjct: 342 FKERFIE-AMDDDFNTPE---ALA---VLFELAREINRALETKD 378
>gnl|CDD|180041 PRK05367, PRK05367, glycine dehydrogenase; Provisional.
Length = 954
Score = 25.5 bits (57), Expect = 3.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 70 ELDPDLKVMF--ITGFAAVALNPDSNA 94
EL L+ ITG+ AV+L P++ A
Sbjct: 542 ELIDQLEAWLAEITGYDAVSLQPNAGA 568
>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
Length = 993
Score = 25.5 bits (56), Expect = 3.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 80 ITGFAAVALNPDSNA 94
ITGF + +L P++ A
Sbjct: 580 ITGFDSFSLQPNAGA 594
>gnl|CDD|162847 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans
type. This family is a subset of the members of the
zinc metallopeptidase family M1 (pfam01433), with a
single member characterized in Streptomyces lividans 66
and designated aminopeptidase N. The spectrum of
activity may differ somewhat from the aminopeptidase N
clade of E. coli and most other Proteobacteria, well
separated phylogenetically within the M1 family. The M1
family also includes leukotriene A-4
hydrolase/aminopeptidase (with a bifunctional active
site).
Length = 831
Score = 25.1 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 66 RRATELDPDLKVMFITGFAAVALNPDS 92
RRA E PD ++ ++ A A +PDS
Sbjct: 624 RRAMESGPDFQLRWLRALALTATDPDS 650
>gnl|CDD|184564 PRK14196, PRK14196, chromosome condensation membrane protein;
Provisional.
Length = 127
Score = 25.2 bits (56), Expect = 4.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 67 RATELDPDLKVMFITGF 83
R LDP+ +++ ITGF
Sbjct: 57 RMPGLDPEWRLLIITGF 73
>gnl|CDD|182879 PRK10977, PRK10977, hypothetical protein; Provisional.
Length = 509
Score = 24.9 bits (55), Expect = 5.5
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 16 RFLIKALGKAGYEVVSCNN----GASAYDKVR 43
K K GY +VSC N G AY VR
Sbjct: 214 PVHDKDFTKGGYGIVSCYNSLPLGGGAYTLVR 245
>gnl|CDD|179447 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1331
Score = 24.6 bits (54), Expect = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 49 LLLTDIVMPEMDGIELARRATELDPDL 75
+L D+V P +G +A R T +DPDL
Sbjct: 243 VLAEDVVDP--EGEVIAERNTAIDPDL 267
>gnl|CDD|162352 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria.
Length = 446
Score = 24.8 bits (54), Expect = 6.6
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 19/77 (24%)
Query: 11 DDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---------EPFSLLLTDIVM----- 56
DDDMR L + + G + ++ K + E + D+V+
Sbjct: 206 DDDMRALLARNMEGRGIRIH-PQTSLTSITKTDDGLKVTLSHGEEI---VADVVLFATGR 261
Query: 57 -PEMDGIELARRATELD 72
P G+ L EL+
Sbjct: 262 SPNTKGLGLEAAGVELN 278
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 24.7 bits (54), Expect = 6.6
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 1 MNQKIL----LAEDDDDMRRFLIKALGK 24
M Q+IL LAE+D +R LI A GK
Sbjct: 30 MCQEILEALRLAEEDPSVRFLLINANGK 57
>gnl|CDD|180136 PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional.
Length = 148
Score = 24.4 bits (54), Expect = 8.3
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 4 KILLAEDDD--DMRRFLIKALGKAGYEVVSCNNGASAYD 40
KI + D +++ +I+ L + G+EV+ G +YD
Sbjct: 2 KIAIGSDHAGFELKEEIIEHLEELGHEVIDL--GPDSYD 38
>gnl|CDD|129533 TIGR00441, gmhA, phosphoheptose isomerase. Involved in
lipopolysaccharide biosynthesis it may have a role in
virulence in Haemophilus ducreyi.
Length = 154
Score = 24.1 bits (52), Expect = 8.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 24 KAGYEVVSCNNGASAYD 40
KAG +V+ C NG SA D
Sbjct: 9 KAGGKVLICGNGGSACD 25
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 24.1 bits (52), Expect = 8.9
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 18 LIKALGKAGYEVVSCNNGASAYDKV------REEPFSLL 50
IK LG+ E+V N + +D++ P LL
Sbjct: 80 TIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLL 118
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.136 0.380
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,042,319
Number of extensions: 122111
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 84
Length of query: 122
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,222,617
Effective search space: 168904680
Effective search space used: 168904680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)