RPSBLAST alignment of GI: 254780312 and protein with PDBid: 3dzd
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Length = 368
Score = 91.1 bits (226), Expect = 6e-20
Identities = 27/115 (23%), Positives = 51/115 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ + L L + GY + A K++E F +++ D+ MP+ DG+
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVN 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E PD V+ ITG +V + + L KPF + + +
Sbjct: 62 FIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAF 116