RPSBLAST alignment of GI: 254780312 and protein with PDBid: 3h5i

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Length = 140

 Score = 63.9 bits (155), Expect = 8e-12
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 2   NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS--LLLTDIVMPEM 59
           ++KIL+ ED     + +   L K GY V     G +A +KV    +   +L+   +   M
Sbjct: 5   DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGM 64

Query: 60  DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
           DG++ A    ++  +L V+F+T     A+     +      + K    + L+  V   L
Sbjct: 65  DGVQTALAIQQI-SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122