BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780312|ref|YP_003064725.1| response regulator receiver
protein [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 247 bits (630), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD
Sbjct: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI
Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
Query: 121 KN 122
KN
Sbjct: 121 KN 122
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 73.6 bits (179), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61
+LL ED+D +RR + L GY V +G A KV E+ ++++D+VMPEMDG
Sbjct: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDAL-KVMEKLQGRVDIVISDVVMPEMDG 742
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118
L R + P LK +FI+G+A A + N PK+AK LSKPF L+ L V+ LL
Sbjct: 743 PTLLRELRKTYPSLKFIFISGYAEDAFS--KNLPKDAKFSFLSKPFSLKQLATSVHELL 799
>gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus
str. psy62]
Length = 123
Score = 40.4 bits (93), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ ED++ + + +GY + NG A + R+ +++ DI + E+
Sbjct: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117
G+E+ ++ E D +L+ + + A A+ D + +SKP L + + +
Sbjct: 61 GLEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
Query: 118 L 118
+
Sbjct: 120 I 120
>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
[Candidatus Liberibacter asiaticus str. psy62]
Length = 354
Score = 26.9 bits (58), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 82 GFAAVALNPDSNAPKN 97
GF V L+PDSN P N
Sbjct: 26 GFCTVILDPDSNCPAN 41
>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
str. psy62]
Length = 236
Score = 26.6 bits (57), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 45/111 (40%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L + V + G + + F ++ D+ + ++ G E
Sbjct: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+ R V ++G +++ +SKPF+ +LV +
Sbjct: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 299
Score = 25.4 bits (54), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 35/117 (29%)
Query: 20 KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-------IELARR----- 67
K LG A V C A + + + PF+LLL D++M ++G I+L +
Sbjct: 112 KGLGHA----VWC-----ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI 162
Query: 68 --ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+E DP L + G V D FH+ D++ + + I N
Sbjct: 163 LAVSECDPQLSCKY--GMVQVGKAIDHQV----------FHISDMIEKPDSSTFISN 207
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 24.3 bits (51), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103
DG++L RR +LD +++ ++ G PD K++ SK
Sbjct: 516 DGVDLLRRTVKLDKGIQLKYLGG-----EKPDFRGYKSSGFKSK 554
>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 20.8 bits (42), Expect = 7.4, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 16 RFLIKALGKAGYEVVSCNNGASAYDKVRE 44
+ L++ K G++ ++C++ A +VR+
Sbjct: 370 KVLMQEAKKLGFQAMACSSMIEALSRVRK 398
>gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus
str. psy62]
Length = 294
Score = 20.8 bits (42), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 19 IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE------LARRATEL 71
IK G E+ G Y+ +R+E S+++ I + G++ +AR+ T L
Sbjct: 106 IKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSL 164
>gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 211
Score = 20.4 bits (41), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 18 LIKALGKAGYEVVSCNNGA 36
LI+AL K G+E+ NG
Sbjct: 103 LIQALNKRGFEIAVETNGT 121
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.136 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,660
Number of Sequences: 1233
Number of extensions: 2491
Number of successful extensions: 18
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 15
length of query: 122
length of database: 328,796
effective HSP length: 64
effective length of query: 58
effective length of database: 249,884
effective search space: 14493272
effective search space used: 14493272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)