HHsearch alignment for GI: 254780313 and conserved domain: COG0293
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=474.67 Aligned_cols=202 Identities=50% Similarity=0.837 Sum_probs=195.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 40079999964089999999881844799999999986458313796788850455306899999706878832786411
Q gi|254780313|r 23 QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102 (227)
Q Consensus 23 ~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD 102 (227)
T Consensus 1 ~~~s~~wl~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~---~vvavD 77 (205)
T COG0293 1 SGSSQRWLAEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGG---KIVAVD 77 (205)
T ss_pred CCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCC---CEEEEE
T ss_conf 96417789876026899987650621058889999987437305898799838799849999999738888---489997
Q ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC-CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 213334698178301122079999999731388-7489753202110222101578898999889876411487746999
Q gi|254780313|r 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 103 l~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~-~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~ 181 (227)
T Consensus 78 i~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 78 ILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEE
T ss_conf 75455678946884132484379999987077876668725887767872200889999999999999872578983999
Q ss_pred EEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf 9305999899999998625846997686657558249898307559
Q gi|254780313|r 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227 (227)
Q Consensus 182 K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfKk 227 (227)
T Consensus 158 K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 158 KVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred EEEECCCHHHHHHHHHHHHCEEEEECCCCCCCCCCEEEEEEECCCC
T ss_conf 9975798799999999863206773585546777148999971435