HHsearch alignment for GI: 254780313 and conserved domain: COG2519
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis].
Probab=97.87 E-value=0.0001 Score=50.00 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCC-CEE
Q ss_conf 44799999999986458313796788850455306899999706878832786411213---------33--4698-178
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILG-VKF 114 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~g-v~~ 114 (227)
T Consensus 79 yPKD~~~----I~~~~gi-~pg~rVlEAGtGSG~lt~~La~~vg~~G---~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 79 YPKDAGY----IVARLGI-SPGSRVLEAGTGSGALTAYLARAVGPEG---HVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CCCCHHH----HHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHCCCC---EEEEEEECHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 5777999----9987099-9887899815680599999999648884---599999527899999999998424561378
Q ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf 30112207999999973138874897532021102221015788989998898764114877469999305999899999
Q gi|254780313|r 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194 (227)
Q Consensus 115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~ 194 (227)
T Consensus 151 ~~~Dv~~~~~--------~~~vDav~LDm-p~P---------------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 151 KLGDVREGID--------EEDVDAVFLDL-PDP---------------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred EECCCCCCCC--------CCCCCEEEECC-CCH---------------HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 7054000246--------55467799758-984---------------89999999871799679998397899999999
Q ss_pred HHHHH-CCEEE---------EECCCCCCCCCC
Q ss_conf 99862-58469---------976866575582
Q gi|254780313|r 195 LLKKH-FQKVI---------HVKPVASRAESV 216 (227)
Q Consensus 195 ~l~~~-F~~V~---------~~KP~aSR~~S~ 216 (227)
T Consensus 207 ~l~~~g~~~ie~~E~l~R~~~v~~~~~RP~~~ 238 (256)
T COG2519 207 ALRERGFVDIEAVETLVRRWEVRKEATRPETR 238 (256)
T ss_pred HHHHCCCCCHHHHEEEEHEEEECCCCCCCCCC
T ss_conf 99866951502320310002320265575510