HHsearch alignment for GI: 254780313 and conserved domain: PRK00517
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed.
Probab=97.80 E-value=0.00075 Score=44.60 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=69.9
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CC-----CC----EEEECCCCHHHHHHHHHHH
Q ss_conf 313796788850455306899999706878832786411213334---69-----81----7830112207999999973
Q gi|254780313|r 64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---IL-----GV----KFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~-----gv----~~~~gDi~~~~~~~~i~~~ 131 (227)
T Consensus 159 ~~~~~~~vLDvG~GSGILaI-aA~klGa----~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~----------~~~ 223 (298)
T PRK00517 159 LVLPGKTVLDVGCGSGILAI-AAAKLGA----KPVLAIDIDPQAVEAARENAELNGVDDRLELYLPE----------DQP 223 (298)
T ss_pred HCCCCCEEEEECCCCHHHHH-HHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCC----------CCC
T ss_conf 35468868871577069999-9997499----84999989899999999999986998426896166----------434
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEEE
Q ss_conf 13887489753202110222101578898999889876411487746999930599989999999862-5846997
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIHV 206 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~~ 206 (227)
T Consensus 224 ~~~~~DlvvANIla~v----------l~~l----~~~~~~~l~~~G~lilSGIl~~~~~~v~~~~~~~g~~~~~~~ 285 (298)
T PRK00517 224 LEGKADVIVANILANP----------LIEL----APDLAALVKPGGRLILSGILAEQADEVLEAYEDAGFTLDEVA 285 (298)
T ss_pred CCCCCCEEEEECCHHH----------HHHH----HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 4676468997315899----------9999----999999738997999927848899999999998799897886