HHsearch alignment for GI: 254780313 and conserved domain: PRK00517

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed.
Probab=97.80  E-value=0.00075  Score=44.60  Aligned_cols=114  Identities=18%  Similarity=0.313  Sum_probs=69.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CC-----CC----EEEECCCCHHHHHHHHHHH
Q ss_conf             313796788850455306899999706878832786411213334---69-----81----7830112207999999973
Q gi|254780313|r   64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---IL-----GV----KFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~-----gv----~~~~gDi~~~~~~~~i~~~  131 (227)
T Consensus       159 ~~~~~~~vLDvG~GSGILaI-aA~klGa----~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~----------~~~  223 (298)
T PRK00517        159 LVLPGKTVLDVGCGSGILAI-AAAKLGA----KPVLAIDIDPQAVEAARENAELNGVDDRLELYLPE----------DQP  223 (298)
T ss_pred             HCCCCCEEEEECCCCHHHHH-HHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCC----------CCC
T ss_conf             35468868871577069999-9997499----84999989899999999999986998426896166----------434


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEEE
Q ss_conf             13887489753202110222101578898999889876411487746999930599989999999862-5846997
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIHV  206 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~~  206 (227)
T Consensus       224 ~~~~~DlvvANIla~v----------l~~l----~~~~~~~l~~~G~lilSGIl~~~~~~v~~~~~~~g~~~~~~~  285 (298)
T PRK00517        224 LEGKADVIVANILANP----------LIEL----APDLAALVKPGGRLILSGILAEQADEVLEAYEDAGFTLDEVA  285 (298)
T ss_pred             CCCCCCEEEEECCHHH----------HHHH----HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             4676468997315899----------9999----999999738997999927848899999999998799897886