HHsearch alignment for GI: 254780313 and conserved domain: PRK10611
>PRK10611 chemotaxis methyltransferase CheR; Provisional.
Probab=91.52 E-value=1.2 Score=24.49 Aligned_cols=126 Identities=15% Similarity=0.207 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH--HHH--HHHHHHCCCCCCEEEEEECCCC---------------CC
Q ss_conf 4479999999998645831379678885045530--689--9999706878832786411213---------------33
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS--WSQ--VAARITGSNANNTRVVAIDILD---------------ME 107 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGg--WsQ--va~~~~~~~~~~~~VigVDl~~---------------~~ 107 (227)
T Consensus 97 FRe~~~F~~L~~~~~~--~~~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~ 174 (287)
T PRK10611 97 FREAHHFPLLAEHARR--RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELK 174 (287)
T ss_pred ECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHH
T ss_conf 4583787999999984--58975899767788723999999999973237777079999798889999980898889984
Q ss_pred CCC----CCEEEECC--C-----CHHHHHHHH--------HH--HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 469----81783011--2-----207999999--------97--313887489753202110222101578898999889
Q gi|254780313|r 108 PIL----GVKFFKFD--F-----LDLDSWEFI--------RQ--AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166 (227)
Q Consensus 108 ~i~----gv~~~~gD--i-----~~~~~~~~i--------~~--~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al 166 (227)
T Consensus 175 ~~p~~~~~ryF~~~~~~~~g~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCR---NVlI--YFd~~----~q~~vl 245 (287)
T PRK10611 175 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCR---NVMI--YFDKT----TQQEIL 245 (287)
T ss_pred CCCHHHHHHHEECCCCCCCCEEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEEC---CCCC--CCCHH----HHHHHH
T ss_conf 59999995116415787666187457876307771400679988888995199978---4053--67899----999999
Q ss_pred HHHHHCCCCCCEEEEEE
Q ss_conf 87641148774699993
Q gi|254780313|r 167 FFALEMLNIGGDFLVKT 183 (227)
Q Consensus 167 ~~A~~~Lk~gG~fV~K~ 183 (227)
T Consensus 246 ~~~~~~L~pgG~L~lG~ 262 (287)
T PRK10611 246 RRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHCCCCEEEEEC
T ss_conf 99999868992899838