HHsearch alignment for GI: 254780313 and conserved domain: PTZ00146
>PTZ00146 fibrillarin; Provisional.
Probab=97.99 E-value=7.6e-05 Score=50.82 Aligned_cols=99 Identities=18% Similarity=0.314 Sum_probs=74.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 13796788850455306899999706878832786411213--------3-34698178301122079999999731388
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
T Consensus 133 Ik~GskVLYLGAasGTTVSHVSDIVG~~---G~VYAVEfSpr~~RdLl~lA~~R~NIvPIleDAr~P~kYr~l---V-~~ 205 (296)
T PTZ00146 133 IKPGSKVLYLGAASGTTVSHVSDLVGPE---GVVYAVEFSHRSGRDLVEMAKRRTNIVPIIEDARYPQKYRML---V-PM 205 (296)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCC---CEEEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH---C-CC
T ss_conf 3799989985146798655666501788---619999706466889999972279833577778974675542---4-55
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 748975320211022210157889899988987641148774699993
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
T Consensus 206 VDvIf~DVAQ-------pdQarI~------~~Na~~FLK~gG~~~i~I 240 (296)
T PTZ00146 206 VDCIFADVAQ-------PDQARIV------ALNAQHFLKNGGHFVISI 240 (296)
T ss_pred CCEEEECCCC-------HHHHHHH------HHHHHHHHHCCCEEEEEE
T ss_conf 5589961787-------6589999------999998531698899999