HHsearch alignment for GI: 254780313 and conserved domain: TIGR00406
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.70 E-value=0.0035 Score=40.42 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=72.8
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CCCCEEEE-----CCCCHHHHHHH
Q ss_conf 99986458313796788850455306899999706878832786411213334---69817830-----11220799999
Q gi|254780313|r 56 LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFK-----FDFLDLDSWEF 127 (227)
Q Consensus 56 ~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~gv~~~~-----gDi~~~~~~~~ 127 (227)
T Consensus 185 Le~L~~~d~k~kh~~viD~GCGSGIL~-IAa~~LGa~----~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~-vPe 258 (330)
T TIGR00406 185 LELLEDLDLKDKHKKVIDVGCGSGILS-IAALKLGAA----KVVGIDIDPLAVESARKNAELNQVSDRLQVKLENS-VPE 258 (330)
T ss_pred HHHHHCCCCCCCCCEEEEECCCHHHHH-HHHHHHHHH----HEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCC-CCC
T ss_conf 998740147776654787126717899-999975123----11221377289999997687458864576432057-875
Q ss_pred HHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEE
Q ss_conf 997313887489753202110222101578898999889876411487746999930599989999999862-584699
Q gi|254780313|r 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIH 205 (227)
Q Consensus 128 i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~ 205 (227)
T Consensus 259 ~~~~~e~~~DViVANiLA~--------------vi~~L~p~~~~L~~~~G~lilSGIl~~~~~sV~~ay~q~GF~~~~~ 323 (330)
T TIGR00406 259 LEQPIEGKADVIVANILAE--------------VIKELYPQFSRLVKPGGHLILSGILETQAQSVCEAYEQAGFTVVEI 323 (330)
T ss_pred CCCCCCCCCCEEEECCHHH--------------HHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEHHH
T ss_conf 3453225667578800245--------------7876413551310689965741347647999999985579463434