HHsearch alignment for GI: 254780313 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.28 E-value=1.9e-05 Score=54.58 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=87.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 796788850455306899999706878832786411213---------3--34698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
T Consensus 87 ~~~~ilDlgtGSG~I~i~la~~~~----~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~--------~~~~ 154 (251)
T TIGR03534 87 GPLKVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPL--------PGGK 154 (251)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCC--------CCCC
T ss_conf 898699955671699999999679----9789999898799999999999809982686513143215--------6898
Q ss_pred CCEEEECCCHHHCC------CCC-CHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHH
Q ss_conf 74897532021102------221-0157---------889899988987641148774699993059998-999999986
Q gi|254780313|r 136 PDLVLSDMAYPTIG------HRK-IDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKK 198 (227)
Q Consensus 136 ~DlVlSDmapn~SG------~~~-~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~ 198 (227)
T Consensus 155 fDlIvsNP-PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei--g~~q~~~v~~l~~~ 231 (251)
T TIGR03534 155 FDLIVSNP-PYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEI--GYDQGEAVRALFEA 231 (251)
T ss_pred CCEEEECC-CCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CHHHHHHHHHHHHH
T ss_conf 66899789-9887456663286010267299971798469999999999998536798899996--83789999999996
Q ss_pred H-CCEEEEECCCCCCCC
Q ss_conf 2-584699768665755
Q gi|254780313|r 199 H-FQKVIHVKPVASRAE 214 (227)
Q Consensus 199 ~-F~~V~~~KP~aSR~~ 214 (227)
T Consensus 232 ~gf~~i~~~kDl~g~~R 248 (251)
T TIGR03534 232 AGFADVETRKDLAGKDR 248 (251)
T ss_pred CCCCEEEEEECCCCCCC
T ss_conf 89970688507898976